Psyllid ID: psy8293

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
MTKKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPIYMYHK
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEccccHHHHHHHccccccHHHHHHHHHHHHHccccccEEEcccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtkktkfhhfknnnsvfgVPLLVNIQktgyalpkFIISSFEWLINNASdqigifrkpgVKTRIQKLREMADEVdfkldevdsqqaYDVADLVKQYFRELPEVLLTNKSSETFMSIFqpiymyhk
Flexible Loop (DISEMBL)
mtkktkfhhfknnnsvfgVPLLVNIQKTGYALPKFIISSFEWLINNASdqigifrkpgVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVlltnkssetfmsifqpiymyhk
Low Complexity Region (SEG)
MtkktkfhhfknnnSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPIYMYHK
Disordered region (IsUnstruct)
*******HHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPIYMY**
Disordered Region (DISOPRED)
****************FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPIYMY**
Disordered Region (DISEMBL)
********HFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPIYMYHK
Disordered Region (DISPRO)
****TKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPIYMYHK
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPIYMYHK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
A7E300	1112	Rho GTPase-activating pro	yes	N/A	0.911	0.101	0.530	2e-27
B9VTT2	1091	Rho GTPase-activating pro	yes	N/A	0.911	0.103	0.530	2e-27
Q96QB1	1528	Rho GTPase-activating pro	yes	N/A	0.911	0.073	0.530	5e-27
Q9R0Z9	1092	Rho GTPase-activating pro	no	N/A	0.911	0.103	0.513	6e-27
Q63744	1091	Rho GTPase-activating pro	yes	N/A	0.911	0.103	0.513	1e-26
Q9Y3M8	1113	StAR-related lipid transf	no	N/A	0.911	0.101	0.504	3e-26
Q923Q2	1113	StAR-related lipid transf	no	N/A	0.838	0.093	0.523	1e-25
Q8K031	1019	StAR-related lipid transf	no	N/A	0.895	0.108	0.470	1e-23
Q92502	1023	StAR-related lipid transf	no	N/A	0.798	0.096	0.509	2e-23
Q9HF75	2071	GTPase-activating protein	yes	N/A	0.935	0.056	0.28	5e-08

>sp|A7E300|RHG07_BOVIN Rho GTPase-activating protein 7 OS=Bos taurus GN=DLC1 PE=2 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/115 (53%), Positives = 82/115 (71%), Gaps = 2/115 (1%)

Query: 3   KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
           K+ K   +K+ N VFGVPL VN+Q+TG  LP+ I  +  +L N+  DQ+G+FRK GVK+R
Sbjct: 647 KRIKVPDYKDRN-VFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSR 705

Query: 63  IQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
           IQ LR+M +E        + Q AYDVAD++KQYFR+LPE L+TNK SETF+ I+Q
Sbjct: 706 IQALRQM-NESTIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 759

Functions as a GTPase-activating protein specific for Rho and an activator of PLCD1 in vivo and induces morphological changes and detachment through cytoskeletal reorganization.
Bos taurus (taxid: 9913)

>sp|B9VTT2|RHG07_CANFA Rho GTPase-activating protein 7 OS=Canis familiaris GN=DLC1 PE=2 SV=1

 Score =  120 bits (301), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/115 (53%), Positives = 82/115 (71%), Gaps = 2/115 (1%)

Query: 3   KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
           K+ K   +K+ N VFGVPL VN+Q+TG  LP+ I  +  +L N+  DQ+G+FRK GVK+R
Sbjct: 626 KRIKVPDYKDRN-VFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSR 684

Query: 63  IQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
           IQ LR+M +E        + Q AYDVAD++KQYFR+LPE L+TNK SETF+ I+Q
Sbjct: 685 IQALRQM-NESAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 738

Functions as a GTPase-activating protein specific for Rho and an activator of PLCD1 in vivo and induces morphological changes and detachment through cytoskeletal reorganization.

Canis familiaris (taxid: 9615)

>sp|Q96QB1|RHG07_HUMAN Rho GTPase-activating protein 7 OS=Homo sapiens GN=DLC1 PE=1 SV=4

 Score =  119 bits (299), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/115 (53%), Positives = 82/115 (71%), Gaps = 2/115 (1%)

Query: 3    KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
            K+ K   +K+  SVFGVPL VN+Q+TG  LP+ I  +  +L N+  DQ+G+FRK GVK+R
Sbjct: 1063 KRIKVPDYKDR-SVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSR 1121

Query: 63   IQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
            IQ LR+M +E        + Q AYDVAD++KQYFR+LPE L+TNK SETF+ I+Q
Sbjct: 1122 IQALRQM-NEGAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 1175

Functions as a GTPase-activating protein specific for Rho and an activator of PLCD1 in vivo and induces morphological changes and detachment through cytoskeletal reorganization.

Homo sapiens (taxid: 9606)

>sp|Q9R0Z9|RHG07_MOUSE Rho GTPase-activating protein 7 OS=Mus musculus GN=Dlc1 PE=1 SV=2

 Score =  119 bits (297), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 59/115 (51%), Positives = 84/115 (73%), Gaps = 2/115 (1%)

Query: 3   KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
           K+ K   +K+  SVFGVPL VN+Q++G  LP+ I  +  +L N+  DQ+G+FRK GVK+R
Sbjct: 627 KRIKVPDYKDR-SVFGVPLTVNVQRSGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSR 685

Query: 63  IQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
           IQ LR+M +  +  ++  + Q AYDVAD++KQYFR+LPE L+TNK SETF+ I+Q
Sbjct: 686 IQALRQMNESAEDNVN-YEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 739

Functions as a GTPase-activating protein specific for Rho and an activator of PLCD1 in vivo and induces morphological changes and detachment through cytoskeletal reorganization.

Mus musculus (taxid: 10090)

>sp|Q63744|RHG07_RAT Rho GTPase-activating protein 7 OS=Rattus norvegicus GN=Dlc1 PE=1 SV=3

 Score =  118 bits (295), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/115 (51%), Positives = 84/115 (73%), Gaps = 2/115 (1%)

Query: 3   KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
           K+ K   +K+  SVFGVPL VN+Q++G  LP+ I  +  +L N+  DQ+G+FRK GVK+R
Sbjct: 626 KRIKVPDYKDR-SVFGVPLTVNVQRSGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSR 684

Query: 63  IQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
           IQ LR+M +  +  ++  + Q AYDVAD++KQYFR+LPE L+TNK SETF+ I+Q
Sbjct: 685 IQALRQMNESAEDYVN-YEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 738

Functions as a GTPase-activating protein specific for Rho and an activator of PLCD1 in vivo and induces morphological changes and detachment through cytoskeletal reorganization.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y3M8|STA13_HUMAN StAR-related lipid transfer protein 13 OS=Homo sapiens GN=STARD13 PE=1 SV=2

 Score =  117 bits (292), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/115 (50%), Positives = 82/115 (71%), Gaps = 2/115 (1%)

Query: 3   KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
           K+ K   +K+  +VFGVPL+V++Q+TG  LP+ I  +  +L +N  DQ+G+FRK GVK+R
Sbjct: 648 KRMKVPDYKDK-AVFGVPLIVHVQRTGQPLPQSIQQALRYLRSNCLDQVGLFRKSGVKSR 706

Query: 63  IQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
           I  LR+M +     ++  D Q AYDVAD+VKQ+FR+LPE L TNK SETF+ I+Q
Sbjct: 707 IHALRQMNENFPENVNYED-QSAYDVADMVKQFFRDLPEPLFTNKLSETFLHIYQ 760

GTPase-activating protein for RhoA, and perhaps for Cdc42. May be involved in regulation of cytoskeletal reorganization, cell proliferation and cell motility. Acts a tumor suppressor in hepatocellular carcinoma cells.

Homo sapiens (taxid: 9606)

>sp|Q923Q2|STA13_MOUSE StAR-related lipid transfer protein 13 OS=Mus musculus GN=Stard13 PE=1 SV=5

 Score =  114 bits (286), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 76/105 (72%), Gaps = 1/105 (0%)

Query: 13  NNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADE 72
           + +VFGVPL+V++Q+TG  LP+ I  +  +L +N  DQ+G+FRK GVK+RI  LR+M + 
Sbjct: 657 DKAVFGVPLIVHVQRTGQPLPQSIQQALRYLRSNCLDQVGLFRKSGVKSRIHALRQMNEN 716

Query: 73  VDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
               +   D Q AYDVAD+VKQ+FR+LPE L TNK SETF+ I+Q
Sbjct: 717 FPDNVSYED-QSAYDVADMVKQFFRDLPEPLFTNKLSETFLHIYQ 760

May function as a GTPase-activating protein.

Mus musculus (taxid: 10090)

>sp|Q8K031|STAR8_MOUSE StAR-related lipid transfer protein 8 OS=Mus musculus GN=Stard8 PE=1 SV=2

 Score =  108 bits (269), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/117 (47%), Positives = 80/117 (68%), Gaps = 6/117 (5%)

Query: 3   KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
           K+ K   ++ ++ VFGVP L+++Q+TG  LP+ I  +  +L +   DQ+GIFRK GVK+R
Sbjct: 553 KRNKTPDYRGHH-VFGVPPLIHVQRTGQPLPQSIQQAMRYLRSQCLDQVGIFRKSGVKSR 611

Query: 63  IQKLREMADEVDFKLDEV--DSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
           IQ LR+M +      D V  + Q AYDVADL+KQYFR+LPE + T+K + TF+ I+Q
Sbjct: 612 IQSLRQMNEN---SPDNVCYEGQSAYDVADLLKQYFRDLPEPIFTSKLTTTFLQIYQ 665

Accelerates GTPase activity of RHOA and CDC42, but not RAC1. Stimulates the hydrolysis of phosphatidylinositol 4,5-bisphosphate by PLCD1.

Mus musculus (taxid: 10090)

>sp|Q92502|STAR8_HUMAN StAR-related lipid transfer protein 8 OS=Homo sapiens GN=STARD8 PE=1 SV=2

 Score =  107 bits (268), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/104 (50%), Positives = 73/104 (70%), Gaps = 5/104 (4%)

Query: 16  VFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDF 75
           VFGVP L+++Q+TG  LP+ I  +  +L +   DQ+GIFRK GVK+RIQ LR+M +    
Sbjct: 569 VFGVPPLIHVQRTGQPLPQSIQQAMRYLRSQCLDQVGIFRKSGVKSRIQNLRQMNET--- 625

Query: 76  KLDEV--DSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
             D V  + Q AYDVADL+KQYFR+LPE + T+K + TF+ I+Q
Sbjct: 626 SPDNVCYEGQSAYDVADLLKQYFRDLPEPIFTSKLTTTFLQIYQ 669

Accelerates GTPase activity of RHOA and CDC42, but not RAC1. Stimulates the hydrolysis of phosphatidylinositol 4,5-bisphosphate by PLCD1.

Homo sapiens (taxid: 9606)

>sp|Q9HF75|BEM2_ASHGO GTPase-activating protein BEM2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BEM2 PE=4 SV=1

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 1    MTKKTKFHH----FKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRK 56
            ++K+  FH      K +N +FGVP+    ++ G  +P  I+   + +     D++G++R 
Sbjct: 1850 LSKRYSFHSKRFKGKTSNKIFGVPVEDVCEREGALIPNIIVKLLDEIELRGLDEVGLYRV 1909

Query: 57   PGVKTRIQKLREMADEVD-----FKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSET 111
            PG    I  L+   D+       F L++    +   +A   K Y RELPE L TN+  + 
Sbjct: 1910 PGSVGSINALKNAFDDEGAVHNTFTLEDDRWFEINTIAGCFKLYLRELPESLFTNEKVDE 1969

Query: 112  FMSIF 116
            F++I 
Sbjct: 1970 FVNIM 1974

GTPase-activating protein (GAP) for RHO proteins. Required for polarized growth and maintenance of cell polarity.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
328698580	680	PREDICTED: stAR-related lipid transfer p	0.943	0.172	0.570	4e-32
328791808	1914	PREDICTED: hypothetical protein LOC41070	0.927	0.060	0.589	1e-30
380028736	1650	PREDICTED: uncharacterized protein LOC10	0.927	0.069	0.589	2e-30
322802782	922	hypothetical protein SINV_12530 [Solenop	0.895	0.120	0.586	2e-30
332018321	936	StAR-related lipid transfer protein 13 [	0.895	0.118	0.586	3e-30
350422451	1897	PREDICTED: hypothetical protein LOC10074	0.927	0.060	0.589	4e-30
340709648	1897	PREDICTED: hypothetical protein LOC10065	0.927	0.060	0.589	5e-30
383861875	1836	PREDICTED: uncharacterized protein LOC10	0.927	0.062	0.581	7e-30
345487951	1787	PREDICTED: hypothetical protein LOC10012	0.895	0.062	0.578	1e-29
242020420	969	Rho-type GTPase activating protein, puta	0.927	0.118	0.572	2e-28

>gi|328698580|ref|XP_003240675.1| PREDICTED: stAR-related lipid transfer protein 13-like [Acyrthosiphon pisum]

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 69/121 (57%), Positives = 95/121 (78%), Gaps = 4/121 (3%)

Query: 3   KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
           +KTK    K+  +VFGVPL+ N+QK G ALP F+ S+F WL +NA D +G+FRKPGVK+R
Sbjct: 185 RKTKMPDPKDK-TVFGVPLIANVQKYGSALPPFVQSAFRWLEDNALDHVGLFRKPGVKSR 243

Query: 63  IQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ--PIY 120
           IQ+L+++A E + +  + ++ QAYDVAD+VKQYFRELPE LLTNK SE+F++IFQ  P+Y
Sbjct: 244 IQRLKQLA-EAEPEDVKFENHQAYDVADMVKQYFRELPEALLTNKLSESFIAIFQHVPVY 302

Query: 121 M 121
           +
Sbjct: 303 L 303

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791808|ref|XP_394183.4| PREDICTED: hypothetical protein LOC410706 [Apis mellifera]

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/117 (58%), Positives = 89/117 (76%), Gaps = 2/117 (1%)

Query: 3    KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
            +K K   +K+  +VFGVPLL+++Q+TG ALPK I  +  WL  NA DQ+GIFRK GVK+R
Sbjct: 1447 RKIKTPDYKDK-TVFGVPLLLSLQRTGQALPKCIQIALRWLRANALDQVGIFRKSGVKSR 1505

Query: 63   IQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPI 119
            IQKL+ M + +   ++  D QQA+DVADLVKQYFRELPE LLTNK SETF++IFQ +
Sbjct: 1506 IQKLKMMTETLGDNIN-FDGQQAFDVADLVKQYFRELPEALLTNKLSETFIAIFQHV 1561

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028736|ref|XP_003698045.1| PREDICTED: uncharacterized protein LOC100869198 [Apis florea]

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/117 (58%), Positives = 89/117 (76%), Gaps = 2/117 (1%)

Query: 3    KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
            +K K   +K+  +VFGVPLL+++Q+TG ALPK I  +  WL  NA DQ+GIFRK GVK+R
Sbjct: 1183 RKIKTPDYKDK-TVFGVPLLLSLQRTGQALPKCIQIALRWLRANALDQVGIFRKSGVKSR 1241

Query: 63   IQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPI 119
            IQKL+ M + +   ++  D QQA+DVADLVKQYFRELPE LLTNK SETF++IFQ +
Sbjct: 1242 IQKLKMMTETLGDNIN-FDGQQAFDVADLVKQYFRELPEALLTNKLSETFIAIFQHV 1297

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802782|gb|EFZ22994.1| hypothetical protein SINV_12530 [Solenopsis invicta]

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 10/121 (8%)

Query: 3   KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
           +K K   +K+  +VFGVPLL+++Q+TG ALPK I  +  WL  NA DQ+GIFRK GVK+R
Sbjct: 455 RKIKSPDYKDK-TVFGVPLLLSLQRTGQALPKCIQIALRWLRANALDQVGIFRKSGVKSR 513

Query: 63  IQKLREM----ADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQP 118
           IQKL+ M     D ++F     D QQA+DVADLVKQYFRELPE LLTNK SETF++IFQ 
Sbjct: 514 IQKLKIMTETQGDNINF-----DGQQAFDVADLVKQYFRELPEALLTNKLSETFIAIFQH 568

Query: 119 I 119
           +
Sbjct: 569 V 569

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018321|gb|EGI58926.1| StAR-related lipid transfer protein 13 [Acromyrmex echinatior]

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 10/121 (8%)

Query: 3   KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
           +K K   +K+  +VFGVPLL+++Q+TG ALPK I  +  WL  NA DQ+GIFRK GVK+R
Sbjct: 468 RKIKTPDYKDK-TVFGVPLLLSLQRTGQALPKCIQIALRWLRANALDQVGIFRKSGVKSR 526

Query: 63  IQKLREM----ADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQP 118
           IQKL+ M     D ++F     D QQA+DVADLVKQYFRELPE LLTNK SETF++IFQ 
Sbjct: 527 IQKLKIMTETQGDNINF-----DGQQAFDVADLVKQYFRELPEALLTNKLSETFIAIFQH 581

Query: 119 I 119
           +
Sbjct: 582 V 582

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422451|ref|XP_003493168.1| PREDICTED: hypothetical protein LOC100745795 [Bombus impatiens]

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/117 (58%), Positives = 89/117 (76%), Gaps = 2/117 (1%)

Query: 3    KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
            +K K   +K+  +VFGVPLL+++Q+TG ALPK I  +  WL  NA DQ+GIFRK GVK+R
Sbjct: 1430 RKIKTPDYKDK-TVFGVPLLLSLQRTGQALPKCIQIALRWLRANALDQVGIFRKSGVKSR 1488

Query: 63   IQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPI 119
            IQKL+ M + +   ++  D QQA+DVADLVKQYFRELPE LLTNK SETF++IFQ +
Sbjct: 1489 IQKLKMMTETLGDNIN-FDGQQAFDVADLVKQYFRELPEALLTNKLSETFIAIFQHV 1544

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709648|ref|XP_003393415.1| PREDICTED: hypothetical protein LOC100652305 [Bombus terrestris]

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 69/117 (58%), Positives = 89/117 (76%), Gaps = 2/117 (1%)

Query: 3    KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
            +K K   +K+  +VFGVPLL+++Q+TG ALPK I  +  WL  NA DQ+GIFRK GVK+R
Sbjct: 1430 RKIKTPDYKDK-TVFGVPLLLSLQRTGQALPKCIQIALRWLRANALDQVGIFRKSGVKSR 1488

Query: 63   IQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPI 119
            IQKL+ M + +   ++  D QQA+DVADLVKQYFRELPE LLTNK SETF++IFQ +
Sbjct: 1489 IQKLKMMTETLGDNIN-FDGQQAFDVADLVKQYFRELPEALLTNKLSETFIAIFQHV 1544

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861875|ref|XP_003706410.1| PREDICTED: uncharacterized protein LOC100883858 [Megachile rotundata]

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 68/117 (58%), Positives = 89/117 (76%), Gaps = 2/117 (1%)

Query: 3    KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
            +K K   +K+  +VFGVPLL+++Q+TG ALPK I  +  WL  NA DQ+GIFRK GV++R
Sbjct: 1369 RKIKTPDYKDK-TVFGVPLLLSLQRTGQALPKCIQIALRWLRANALDQVGIFRKSGVRSR 1427

Query: 63   IQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPI 119
            IQKL+ M + +   ++  D QQA+DVADLVKQYFRELPE LLTNK SETF++IFQ +
Sbjct: 1428 IQKLKMMTETLGDNIN-FDGQQAFDVADLVKQYFRELPEALLTNKLSETFIAIFQHV 1483

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487951|ref|XP_001606903.2| PREDICTED: hypothetical protein LOC100123284 [Nasonia vitripennis]

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/121 (57%), Positives = 89/121 (73%), Gaps = 10/121 (8%)

Query: 3    KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
            +K K   +K+  +VFGVPLL+++Q+TG ALPK I  +  WL  NA DQ+GIFRK GV++R
Sbjct: 1319 RKIKTPDYKDK-TVFGVPLLLSLQRTGQALPKCIQIALRWLRANALDQVGIFRKSGVRSR 1377

Query: 63   IQKLREM----ADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQP 118
            IQKL+ M     D ++F     D QQA+DVADLVKQYFRELPE LLTNK SETF++IFQ 
Sbjct: 1378 IQKLKVMTETQGDNINF-----DGQQAFDVADLVKQYFRELPEALLTNKLSETFIAIFQH 1432

Query: 119  I 119
            +
Sbjct: 1433 V 1433

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020420|ref|XP_002430653.1| Rho-type GTPase activating protein, putative [Pediculus humanus corporis] gi|212515825|gb|EEB17915.1| Rho-type GTPase activating protein, putative [Pediculus humanus corporis]

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/117 (57%), Positives = 86/117 (73%), Gaps = 2/117 (1%)

Query: 3   KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTR 62
           +K K   +K+  +VFGVPLL+++Q++G ALPK I  +  WL  NA DQ+G+FRK GV++R
Sbjct: 502 RKIKTPDYKDK-TVFGVPLLLSLQRSGQALPKCIQLALRWLRINALDQVGLFRKSGVRSR 560

Query: 63  IQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPI 119
           IQ L+ M  E   +L   D  QAYDVAD+VKQYFRELPE LLTNK SETF+SIFQ +
Sbjct: 561 IQTLKTMT-ENQGELISYDGHQAYDVADMVKQYFRELPEALLTNKLSETFISIFQHV 616

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
UNIPROTKB|D6RGY9	467	DLC1 "Rho GTPase-activating pr	0.822	0.218	0.563	3e-25
FB|FBgn0086901	2351	cv-c "crossveinless c" [Drosop	0.822	0.043	0.590	8.9e-25
MGI|MGI:1354949	1092	Dlc1 "deleted in liver cancer	0.822	0.093	0.543	2.2e-24
UNIPROTKB|I3LDA3	814	I3LDA3 "Uncharacterized protei	0.822	0.125	0.553	2.8e-24
UNIPROTKB|E9PDZ8	1125	DLC1 "Rho GTPase-activating pr	0.822	0.090	0.563	3e-24
RGD|68416	1091	Dlc1 "deleted in liver cancer	0.822	0.093	0.543	3.7e-24
UNIPROTKB|A7E300	1112	DLC1 "Rho GTPase-activating pr	0.822	0.091	0.553	3.8e-24
UNIPROTKB|F1MIZ8	1112	DLC1 "Rho GTPase-activating pr	0.822	0.091	0.553	3.8e-24
UNIPROTKB|Q96QB1	1528	DLC1 "Rho GTPase-activating pr	0.822	0.066	0.563	4.7e-24
UNIPROTKB|B9VTT2	1091	DLC1 "Rho GTPase-activating pr	0.822	0.093	0.553	4.7e-24

UNIPROTKB|D6RGY9 DLC1 "Rho GTPase-activating protein 7" [Homo sapiens (taxid:9606)]

 Score = 290 (107.1 bits), Expect = 3.0e-25, P = 3.0e-25
 Identities = 58/103 (56%), Positives = 76/103 (73%)

Query:    15 SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD 74
             SVFGVPL VN+Q+TG  LP+ I  +  +L N+  DQ+G+FRK GVK+RIQ LR+M +E  
Sbjct:    13 SVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQM-NEGA 71

Query:    75 FKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
                   + Q AYDVAD++KQYFR+LPE L+TNK SETF+ I+Q
Sbjct:    72 IDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 114

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0003007 "heart morphogenesis" evidence=IEA

GO:0021575 "hindbrain morphogenesis" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0048041 "focal adhesion assembly" evidence=IEA

FB|FBgn0086901 cv-c "crossveinless c" [Drosophila melanogaster (taxid:7227)]

 Score = 299 (110.3 bits), Expect = 8.9e-25, P = 8.9e-25
 Identities = 62/105 (59%), Positives = 77/105 (73%)

Query:    16 VFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDF 75
             VFGVPLL+ +Q++G  LP  + ++F WL  NA DQ+GIFRK G K+RI KLRE  +  D 
Sbjct:  1896 VFGVPLLMILQRSGQTLPLAVRAAFRWLQLNALDQVGIFRKSGGKSRIMKLREQIEVTDS 1955

Query:    76 K---LDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
                 +D  D QQAYDVAD++KQYFRELPE LLT K SETF++IFQ
Sbjct:  1956 TAECMDVFDLQQAYDVADMLKQYFRELPESLLTTKMSETFVAIFQ 2000

GO:0005100 "Rho GTPase activator activity" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007391 "dorsal closure" evidence=IMP

GO:0007443 "Malpighian tubule morphogenesis" evidence=IMP

GO:0007494 "midgut development" evidence=IMP

GO:0005096 "GTPase activator activity" evidence=IMP

GO:0035277 "spiracle morphogenesis, open tracheal system" evidence=IMP

GO:0008258 "head involution" evidence=IMP

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0035160 "maintenance of epithelial integrity, open tracheal system" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP

GO:0007427 "epithelial cell migration, open tracheal system" evidence=IMP

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IGI

GO:0048814 "regulation of dendrite morphogenesis" evidence=IMP

GO:0007274 "neuromuscular synaptic transmission" evidence=IMP

MGI|MGI:1354949 Dlc1 "deleted in liver cancer 1" [Mus musculus (taxid:10090)]

 Score = 291 (107.5 bits), Expect = 2.2e-24, P = 2.2e-24
 Identities = 56/103 (54%), Positives = 78/103 (75%)

Query:    15 SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD 74
             SVFGVPL VN+Q++G  LP+ I  +  +L N+  DQ+G+FRK GVK+RIQ LR+M +  +
Sbjct:   638 SVFGVPLTVNVQRSGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNESAE 697

Query:    75 FKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
               ++  + Q AYDVAD++KQYFR+LPE L+TNK SETF+ I+Q
Sbjct:   698 DNVN-YEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 739

GO:0001725 "stress fiber" evidence=ISO

GO:0001843 "neural tube closure" evidence=IMP

GO:0003007 "heart morphogenesis" evidence=IMP

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005100 "Rho GTPase activator activity" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005884 "actin filament" evidence=ISO

GO:0005901 "caveola" evidence=ISO

GO:0005925 "focal adhesion" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0007010 "cytoskeleton organization" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0007202 "activation of phospholipase C activity" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0008360 "regulation of cell shape" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0017166 "vinculin binding" evidence=ISO

GO:0021575 "hindbrain morphogenesis" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0030054 "cell junction" evidence=IEA

GO:0030336 "negative regulation of cell migration" evidence=ISO

GO:0030900 "forebrain development" evidence=IMP

GO:0032321 "positive regulation of Rho GTPase activity" evidence=ISO

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISO

GO:0035024 "negative regulation of Rho protein signal transduction" evidence=ISO

GO:0035307 "positive regulation of protein dephosphorylation" evidence=ISO

GO:0042169 "SH2 domain binding" evidence=ISO

GO:0043274 "phospholipase binding" evidence=ISO

GO:0043547 "positive regulation of GTPase activity" evidence=IEA

GO:0045121 "membrane raft" evidence=ISO

GO:0048041 "focal adhesion assembly" evidence=IMP

GO:0051497 "negative regulation of stress fiber assembly" evidence=ISO

UNIPROTKB|I3LDA3 I3LDA3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 288 (106.4 bits), Expect = 2.8e-24, P = 2.8e-24
 Identities = 57/103 (55%), Positives = 76/103 (73%)

Query:    15 SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD 74
             +VFGVPL VN+Q+TG  LP+ I  +  +L N+  DQ+G+FRK GVK+RIQ LR+M +E  
Sbjct:   696 NVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQM-NESA 754

Query:    75 FKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
                   + Q AYDVAD++KQYFR+LPE L+TNK SETF+ I+Q
Sbjct:   755 LDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 797

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|E9PDZ8 DLC1 "Rho GTPase-activating protein 7" [Homo sapiens (taxid:9606)]

 Score = 290 (107.1 bits), Expect = 3.0e-24, P = 3.0e-24
 Identities = 58/103 (56%), Positives = 76/103 (73%)

Query:    15 SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD 74
             SVFGVPL VN+Q+TG  LP+ I  +  +L N+  DQ+G+FRK GVK+RIQ LR+M +E  
Sbjct:   671 SVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQM-NEGA 729

Query:    75 FKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
                   + Q AYDVAD++KQYFR+LPE L+TNK SETF+ I+Q
Sbjct:   730 IDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 772

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

RGD|68416 Dlc1 "deleted in liver cancer 1" [Rattus norvegicus (taxid:10116)]

 Score = 289 (106.8 bits), Expect = 3.7e-24, P = 3.7e-24
 Identities = 56/103 (54%), Positives = 78/103 (75%)

Query:    15 SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD 74
             SVFGVPL VN+Q++G  LP+ I  +  +L N+  DQ+G+FRK GVK+RIQ LR+M +  +
Sbjct:   637 SVFGVPLTVNVQRSGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNESAE 696

Query:    75 FKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
               ++  + Q AYDVAD++KQYFR+LPE L+TNK SETF+ I+Q
Sbjct:   697 DYVN-YEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 738

GO:0001843 "neural tube closure" evidence=IEA;ISO

GO:0003007 "heart morphogenesis" evidence=IEA;ISO

GO:0005100 "Rho GTPase activator activity" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO;NAS

GO:0005901 "caveola" evidence=IEA;ISO

GO:0005925 "focal adhesion" evidence=IEA;ISO;IDA

GO:0006917 "induction of apoptosis" evidence=IEA;ISO

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA;ISO

GO:0007010 "cytoskeleton organization" evidence=IDA;NAS

GO:0007165 "signal transduction" evidence=IEA

GO:0007202 "activation of phospholipase C activity" evidence=IDA

GO:0007266 "Rho protein signal transduction" evidence=NAS

GO:0008285 "negative regulation of cell proliferation" evidence=IEA;ISO;ISS

GO:0008360 "regulation of cell shape" evidence=IEA;ISO

GO:0017166 "vinculin binding" evidence=IPI

GO:0021575 "hindbrain morphogenesis" evidence=IEA;ISO

GO:0030036 "actin cytoskeleton organization" evidence=IEA;ISO

GO:0030336 "negative regulation of cell migration" evidence=IEA;ISO

GO:0030900 "forebrain development" evidence=IEA;ISO

GO:0032321 "positive regulation of Rho GTPase activity" evidence=ISO;IDA

GO:0032869 "cellular response to insulin stimulus" evidence=IEP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISO

GO:0035024 "negative regulation of Rho protein signal transduction" evidence=IEA;ISO

GO:0035307 "positive regulation of protein dephosphorylation" evidence=IEA;ISO

GO:0042169 "SH2 domain binding" evidence=IEA;ISO

GO:0043274 "phospholipase binding" evidence=IPI

GO:0045121 "membrane raft" evidence=IDA

GO:0048041 "focal adhesion assembly" evidence=IEA;ISO

GO:0051497 "negative regulation of stress fiber assembly" evidence=IEA;ISO

GO:0001725 "stress fiber" evidence=IDA

GO:0005884 "actin filament" evidence=IDA

GO:0030675 "Rac GTPase activator activity" evidence=ISO

UNIPROTKB|A7E300 DLC1 "Rho GTPase-activating protein 7" [Bos taurus (taxid:9913)]

 Score = 289 (106.8 bits), Expect = 3.8e-24, P = 3.8e-24
 Identities = 57/103 (55%), Positives = 76/103 (73%)

Query:    15 SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD 74
             +VFGVPL VN+Q+TG  LP+ I  +  +L N+  DQ+G+FRK GVK+RIQ LR+M +E  
Sbjct:   658 NVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQM-NEST 716

Query:    75 FKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
                   + Q AYDVAD++KQYFR+LPE L+TNK SETF+ I+Q
Sbjct:   717 IDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 759

GO:0016020 "membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1MIZ8 DLC1 "Rho GTPase-activating protein 7" [Bos taurus (taxid:9913)]

 Score = 289 (106.8 bits), Expect = 3.8e-24, P = 3.8e-24
 Identities = 57/103 (55%), Positives = 76/103 (73%)

Query:    15 SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD 74
             +VFGVPL VN+Q+TG  LP+ I  +  +L N+  DQ+G+FRK GVK+RIQ LR+M +E  
Sbjct:   658 NVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQM-NEST 716

Query:    75 FKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
                   + Q AYDVAD++KQYFR+LPE L+TNK SETF+ I+Q
Sbjct:   717 IDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 759

GO:0051497 "negative regulation of stress fiber assembly" evidence=IEA

GO:0048041 "focal adhesion assembly" evidence=IEA

GO:0042169 "SH2 domain binding" evidence=IEA

GO:0035307 "positive regulation of protein dephosphorylation" evidence=IEA

GO:0035024 "negative regulation of Rho protein signal transduction" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0030336 "negative regulation of cell migration" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0021575 "hindbrain morphogenesis" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003007 "heart morphogenesis" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q96QB1 DLC1 "Rho GTPase-activating protein 7" [Homo sapiens (taxid:9606)]

 Score = 290 (107.1 bits), Expect = 4.7e-24, P = 4.7e-24
 Identities = 58/103 (56%), Positives = 76/103 (73%)

Query:    15 SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD 74
             SVFGVPL VN+Q+TG  LP+ I  +  +L N+  DQ+G+FRK GVK+RIQ LR+M +E  
Sbjct:  1074 SVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQM-NEGA 1132

Query:    75 FKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
                   + Q AYDVAD++KQYFR+LPE L+TNK SETF+ I+Q
Sbjct:  1133 IDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 1175

GO:0005901 "caveola" evidence=IDA

GO:0005100 "Rho GTPase activator activity" evidence=IDA;IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IMP;IDA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IDA

GO:0030336 "negative regulation of cell migration" evidence=IDA;IMP

GO:0006917 "induction of apoptosis" evidence=IDA

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0035307 "positive regulation of protein dephosphorylation" evidence=IDA

GO:0042169 "SH2 domain binding" evidence=IPI

GO:0005925 "focal adhesion" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0051497 "negative regulation of stress fiber assembly" evidence=IDA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0035024 "negative regulation of Rho protein signal transduction" evidence=IMP

GO:0030675 "Rac GTPase activator activity" evidence=IDA

GO:0001843 "neural tube closure" evidence=ISS

GO:0003007 "heart morphogenesis" evidence=ISS

GO:0021575 "hindbrain morphogenesis" evidence=ISS

GO:0030036 "actin cytoskeleton organization" evidence=ISS

GO:0030900 "forebrain development" evidence=ISS

GO:0048041 "focal adhesion assembly" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

GO:0032321 "positive regulation of Rho GTPase activity" evidence=IDA;IMP

UNIPROTKB|B9VTT2 DLC1 "Rho GTPase-activating protein 7" [Canis lupus familiaris (taxid:9615)]

 Score = 288 (106.4 bits), Expect = 4.7e-24, P = 4.7e-24
 Identities = 57/103 (55%), Positives = 76/103 (73%)

Query:    15 SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD 74
             +VFGVPL VN+Q+TG  LP+ I  +  +L N+  DQ+G+FRK GVK+RIQ LR+M +E  
Sbjct:   637 NVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQM-NESA 695

Query:    75 FKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
                   + Q AYDVAD++KQYFR+LPE L+TNK SETF+ I+Q
Sbjct:   696 IDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 738

GO:0016020 "membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96QB1	RHG07_HUMAN	No assigned EC number	0.5304	0.9112	0.0739	yes	N/A
B9VTT2	RHG07_CANFA	No assigned EC number	0.5304	0.9112	0.1035	yes	N/A
A7E300	RHG07_BOVIN	No assigned EC number	0.5304	0.9112	0.1016	yes	N/A
Q63744	RHG07_RAT	No assigned EC number	0.5130	0.9112	0.1035	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	124
cd04375	220	cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-	7e-51
pfam00620	152	pfam00620, RhoGAP, RhoGAP domain	5e-21
smart00324	174	smart00324, RhoGAP, GTPase-activator protein for R	1e-18
cd00159	169	cd00159, RhoGAP, RhoGAP: GTPase-activator protein	2e-16
cd04398	192	cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas	2e-12
cd04394	202	cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA	5e-11
cd04376	206	cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G	5e-11
cd04385	184	cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-	2e-10
cd04381	182	cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP	1e-09
cd04400	190	cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPas	1e-09
cd04384	195	cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas	1e-09
cd04391	216	cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP	2e-09
cd04397	213	cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPas	3e-08
cd04377	186	cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA	4e-08
cd04387	196	cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac	3e-07
cd04393	189	cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP	4e-07
cd04386	203	cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP	6e-07
cd04404	195	cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA	1e-06
cd04392	208	cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP	2e-06
cd04378	203	cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: Rho	6e-06
cd04383	188	cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas	1e-05
cd04408	200	cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-	3e-05
cd04402	192	cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP	3e-05
cd04395	196	cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP	7e-05
cd04409	211	cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas	9e-05
cd04396	225	cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: Rho	1e-04
cd04406	186	cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho	2e-04
cd04407	186	cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho	2e-04
cd04390	199	cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24	2e-04
cd04403	187	cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_	3e-04
cd04374	203	cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activato	6e-04
cd04389	187	cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-	0.001
cd04379	207	cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-	0.004

>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

 Score =  160 bits (406), Expect = 7e-51
 Identities = 66/103 (64%), Positives = 79/103 (76%), Gaps = 1/103 (0%)

Query: 15  SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD 74
           +VFGVPLLVN+Q+TG  LP+ I  +  WL NNA DQ+G+FRK GVK+RIQKLR M  E  
Sbjct: 3   NVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSM-IESS 61

Query: 75  FKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
                 D QQAYDVAD++KQYFR+LPE LLTNK SETF++IFQ
Sbjct: 62  TDNVNYDGQQAYDVADMLKQYFRDLPEPLLTNKLSETFIAIFQ 104

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain

 Score = 81.8 bits (203), Expect = 5e-21
 Identities = 29/85 (34%), Positives = 45/85 (52%)

Query: 33  PKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLV 92
           P  +    E+L     D  GIFR  G  +RI++LRE  D  +    +++ +  + VA L+
Sbjct: 1   PLIVEKCVEFLEKRGLDTEGIFRVSGSASRIKELREAFDSGEDVDLDLEEEDVHVVASLL 60

Query: 93  KQYFRELPEVLLTNKSSETFMSIFQ 117
           K + RELPE LLT +  E F+   +
Sbjct: 61  KLFLRELPEPLLTFELYEEFIEAAK 85

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. Length = 152

>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases

 Score = 76.2 bits (188), Expect = 1e-18
 Identities = 27/86 (31%), Positives = 45/86 (52%)

Query: 32  LPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADL 91
           +P  +    E+L     D  GI+R  G K+R+++LR+  D       ++     +DVA L
Sbjct: 3   IPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELRDAFDSGPDPDLDLSEYDVHDVAGL 62

Query: 92  VKQYFRELPEVLLTNKSSETFMSIFQ 117
           +K + RELPE L+T +  E F+   +
Sbjct: 63  LKLFLRELPEPLITYELYEEFIEAAK 88

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers. Length = 174

>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

 Score = 70.4 bits (173), Expect = 2e-16
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 33  PKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLV 92
           P  I    E+L  N  +  GIFR  G  ++I++L++  D  +  +D+++    +DVA L+
Sbjct: 1   PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGED-IDDLEDYDVHDVASLL 59

Query: 93  KQYFRELPEVLLTNKSSETFMSIFQ 117
           K Y RELPE L+  +  + F+ + +
Sbjct: 60  KLYLRELPEPLIPFELYDEFIELAK 84

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins. Length = 169

>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 4/100 (4%)

Query: 17  FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADE---- 72
           FGVPL   I + G  +P  +    + + N   +  GI+R  G  +R+ KL+E+ D+    
Sbjct: 1   FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLN 60

Query: 73  VDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETF 112
           V     E      + VA L+K +FRELPE LLT   S  F
Sbjct: 61  VLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREF 100

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

 Score = 56.7 bits (137), Expect = 5e-11
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 7/103 (6%)

Query: 16  VFGVPL--LVNIQKTGY-ALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADE 72
           VFGVPL  L +     Y  +PKF++ +  +L+++ S + G+FRK G   R ++L+    +
Sbjct: 1   VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLDHLSTE-GLFRKSGSVVRQKELKA---K 56

Query: 73  VDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSI 115
           ++     + S    DVA L+KQ+FRELPE LL     E  +  
Sbjct: 57  LEGGEACLSSALPCDVAGLLKQFFRELPEPLLPYDLHEALLKA 99

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 202

>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

 Score = 56.7 bits (137), Expect = 5e-11
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 32  LPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEV-DFKLDEVDSQQAYDVAD 90
           +P+ + S  + L  +    +GIFR    K R+++LRE  D   D  LDE  +   +DVA 
Sbjct: 9   VPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDE--NHSVHDVAA 66

Query: 91  LVKQYFRELPEVLLT 105
           L+K++FR++P+ LL 
Sbjct: 67  LLKEFFRDMPDPLLP 81

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 206

>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 20  PLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLRE--MADEVDFKL 77
           P L + Q T   +P  +    +++  +     GI+RK G  + ++KL E    D    +L
Sbjct: 3   PALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQL 62

Query: 78  DEVDSQQAYDVADLVKQYFRELPEVLLTNKS 108
            E      +DVAD++K++ R+LP+ LLT++ 
Sbjct: 63  RE-GEYTVHDVADVLKRFLRDLPDPLLTSEL 92

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 184

>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

 Score = 52.8 bits (127), Expect = 1e-09
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 8/95 (8%)

Query: 17  FGVPLLVNIQKT----GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADE 72
           FG  L + ++++    G  LP       +++  +     GI++  G+K+++ +L+   + 
Sbjct: 1   FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNR 60

Query: 73  VDF-KLDEVDSQQAYDVADLVKQYFRELPEVLLTN 106
            +   L+E +      VA L+KQY RELPE LLT 
Sbjct: 61  RESPNLEEYE---PPTVASLLKQYLRELPEPLLTK 92

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 182

>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 10/109 (9%)

Query: 16  VFGVPLLV-----NIQKTGYALPKFIISSFEWLI-NNASDQIGIFRKPGVKTRIQKLREM 69
           +FG PL       + +  G  LP  +    E+L  N A  + GIFR  G  + I++L+E 
Sbjct: 1   IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKER 60

Query: 70  ADEVDFKLDEVDSQQAYD---VADLVKQYFRELPEVLLTNKSSETFMSI 115
            +  ++ +D   S    D   VA L+K Y RELP ++L  +    F  +
Sbjct: 61  FNT-EYDVDLFSSSLYPDVHTVAGLLKLYLRELPTLILGGELHNDFKRL 108

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 190

>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

 Score = 52.9 bits (127), Expect = 1e-09
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 15  SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADE-- 72
            VFG  L  ++  +G  +P+ + S  E+ I       GI+R  G+ + IQ+LR   D   
Sbjct: 1   RVFGCDLTEHLLNSGQDVPQVLKSCTEF-IEKHGIVDGIYRLSGIASNIQRLRHEFDSEQ 59

Query: 73  VDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
           +     +V  Q  + V+ L K YFRELP  LLT +  E F     
Sbjct: 60  IPDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAVS 104

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 12/109 (11%)

Query: 16  VFGVP---LLVNIQKT--GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMA 70
           +FGVP   LL   QK   G  +P         L     +  GI R PG   R++ L +  
Sbjct: 1   LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQEL 60

Query: 71  D----EVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSI 115
           +    E  F  D+V   + +D A L+K + RELP+ LLT +    F S+
Sbjct: 61  EAKFYEGTFLWDQV---KQHDAASLLKLFIRELPQPLLTVEYLPAFYSV 106

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 216

>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 6/66 (9%)

Query: 52  GIFRKPGVKTRIQKLREMADEVDFKLDEVD---SQQAYDVADLVKQYFRELPEVLLTNKS 108
           G+FRK G    I++L+E+ +E+D    EV     +    +A L+K++ RELP+ LLT K 
Sbjct: 47  GVFRKNG---NIRRLKELTEEIDKNPTEVPDLSKENPVQLAALLKKFLRELPDPLLTFKL 103

Query: 109 SETFMS 114
              ++S
Sbjct: 104 YRLWIS 109

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 213

>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

 Score = 49.0 bits (117), Expect = 4e-08
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 17  FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREM----ADE 72
           FGV L  ++     ++P  +    E +  +     GI+RK G   +I++LR+      D 
Sbjct: 1   FGVSL-SSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDS 59

Query: 73  VDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFM 113
           V+      +    + +  ++KQ+ RELPE L+T +  E F+
Sbjct: 60  VNL-----EDYPIHVITSVLKQWLRELPEPLMTFELYENFL 95

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

 Score = 46.5 bits (110), Expect = 3e-07
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 17  FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMAD----E 72
           FGV +    ++    +P  +    E +     +++GI+R  GV T IQ L+   D    +
Sbjct: 1   FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKD 60

Query: 73  VDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNK 107
           V   L E+D      +A  +K YFRELPE L T++
Sbjct: 61  VSVMLSEMDVNA---IAGTLKLYFRELPEPLFTDE 92

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 11/108 (10%)

Query: 16  VFGVPL--LVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMAD-- 71
           VFGVPL  L    +    +P  +    E+L  +  +Q G+FR  G    ++ LR+  D  
Sbjct: 2   VFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSG 61

Query: 72  -EVDF-KLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
            EVD  K  +V S      A L++ + +ELPE L+        M ++Q
Sbjct: 62  EEVDLSKEADVCS-----AASLLRLFLQELPEGLIPASLQIRLMQLYQ 104

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude. Length = 189

>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 13  NNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADE 72
              VFG PL  ++++TG  +   I +    L+    ++ G+FR  G  +++++L+   D 
Sbjct: 1   EKPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDA 60

Query: 73  VDFKLDEVDS-QQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
             F L   +     + VA  +K Y RELP+ LLT    E ++    
Sbjct: 61  GTFSLPLDEFYSDPHAVASALKSYLRELPDPLLTYNLYEDWVQAAN 106

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 11/96 (11%)

Query: 17  FGVPLLVNIQKTGY--ALPKFIISSFEWLINNASDQIGIFRKPG----VKTRIQKLREMA 70
           FGV L    +K      +P  +  + E+L  +A    GIFR+      VK  +Q+   M 
Sbjct: 6   FGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVK-EVQQKYNMG 64

Query: 71  DEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTN 106
           + VDF     D       A ++K + RELPE LLT 
Sbjct: 65  EPVDFD-QYEDVHLP---AVILKTFLRELPEPLLTF 96

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 40  FEWLINNASDQIGIFRKPGVKTRIQKLREMADE-VDFKLDEVDSQQAYDVADLVKQYFRE 98
            E+L  N   + G+FRKPG   R Q+LR++ +   D  L+      A+D A ++K +  E
Sbjct: 17  IEYLEKNLRVE-GLFRKPGNSARQQELRDLLNSGTDLDLESGGFH-AHDCATVLKGFLGE 74

Query: 99  LPEVLLTNK 107
           LPE LLT+ 
Sbjct: 75  LPEPLLTHA 83

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 208

>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 45  NNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLL 104
           N A    GI+R  G K R++KL + A E    L E+     +D++ ++K + R+LPE L+
Sbjct: 29  NRALGVQGIYRVSGSKARVEKLCQ-AFENGKDLVELSELSPHDISSVLKLFLRQLPEPLI 87

Query: 105 TNKSSETFMSI 115
             +    F+++
Sbjct: 88  LFRLYNDFIAL 98

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 15  SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD 74
            +F   L   IQ +G A+P  + S   ++        GIFR  G +  +  ++   +  +
Sbjct: 1   KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGE 60

Query: 75  FKLDEVDSQQAYD-VADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
             L +  +    + VA ++K YFR L   L   +  E  MS  +
Sbjct: 61  DPLADDQNDHDINSVAGVLKLYFRGLENPLFPKERFEDLMSCVK 104

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 188

>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 17  FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFK 76
           FGV      +     +P  ++     + N A    GI+R  G K R++KL + A E    
Sbjct: 1   FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQ-AFENGRD 59

Query: 77  LDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSI 115
           L ++     +D+  ++K + +ELPE +L  +  + F+++
Sbjct: 60  LVDLSGHSPHDITSVLKHFLKELPEPVLPFQLYDDFIAL 98

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 17  FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMAD---EV 73
           FG PL  NI +    LPK I+     L        GIFR+       ++L+E  +   EV
Sbjct: 2   FGQPL-SNICEDD-NLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEV 59

Query: 74  DFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMS 114
           D K     ++    +A ++K + R +P  LL++   E +MS
Sbjct: 60  DLK-----AEPVLLLASVLKDFLRNIPGSLLSSDLYEEWMS 95

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 49  DQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQ-----AYDVADLVKQYFRELPEVL 103
           + +GI+R PG    I  L+E   E++    ++D Q         V+ L+K +FR+LPE L
Sbjct: 35  ETVGIYRVPGNNAAISALQE---ELNRGGFDIDLQDPRWRDVNVVSSLLKSFFRKLPEPL 91

Query: 104 LTNKSSETFM 113
            TN+    F+
Sbjct: 92  FTNELYPDFI 101

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

 Score = 39.8 bits (93), Expect = 9e-05
 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 52  GIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLL 104
           GI+R  G K+R++KL + A E    L E+     +D+++++K Y R+LPE L+
Sbjct: 36  GIYRVNGAKSRVEKLCQ-AFENGKDLVELSELSPHDISNVLKLYLRQLPEPLI 87

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 211

>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 24/131 (18%)

Query: 16  VFGVPLLVNIQ----------------KTGYALPKFIISSFEWLINNASDQIGIFRKPGV 59
           VFGV L  +++                  GY +P  +     +L  NA++  GIFR  G 
Sbjct: 1   VFGVSLEESLKYASVAISIVDEDGEQYVYGY-IPVVVAKCGVYLKENATEVEGIFRVAGS 59

Query: 60  KTRIQKLREMADE-VDF--KLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETF---M 113
             RI++L+ +     D+    D  D    +D A ++++Y   LPE L+     E F   +
Sbjct: 60  SKRIRELQLIFSTPPDYGKSFDW-DGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPL 118

Query: 114 SIFQPIYMYHK 124
                I  Y K
Sbjct: 119 RKRPRILQYMK 129

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 225

>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 52  GIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSET 111
           GI+RK G   +I++LR+  D  D     +D    + +A + KQ+ R+LP  L+T +  E 
Sbjct: 35  GIYRKSGSTNKIKELRQGLD-TDANSVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEE 93

Query: 112 FM 113
           F+
Sbjct: 94  FL 95

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 52  GIFRKPGVKTRIQKLREM--ADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSS 109
           GI+RK G   R+++L ++  AD  + KL+       + +  L+KQ+ RELPE L+T    
Sbjct: 35  GIYRKSGSANRMKELHQLLQADPENVKLENY---PIHAITGLLKQWLRELPEPLMTFAQY 91

Query: 110 ETFM 113
             F+
Sbjct: 92  NDFL 95

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 49  DQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKS 108
            + G+FR PG    +++L++  D  +    + D+   + VA L+K Y RELPE ++    
Sbjct: 39  KEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTD-VHTVASLLKLYLRELPEPVIPWAQ 97

Query: 109 SETFMS 114
            E F+S
Sbjct: 98  YEDFLS 103

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 199

>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 17  FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMAD-EVDF 75
           FG  L    Q+    +PKF+    E +     D  GI+R  G    IQKLR   D +   
Sbjct: 1   FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKL 60

Query: 76  KLDEVDSQQAYDVADLVKQYFRELPEVLLT 105
            LD+   +  + +   +K +FRELPE L  
Sbjct: 61  DLDDSKWEDIHVITGALKLFFRELPEPLFP 90

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 52  GIFRKPGVKTRIQKL------REMAD--EVDFKLDEVDSQQAYDVADLVKQYFRELPEVL 103
           G++R  GV +++QKL       + +   +VD    E + +    +   +K Y R LPE L
Sbjct: 48  GLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKT---ITSALKTYLRNLPEPL 104

Query: 104 LT 105
           +T
Sbjct: 105 MT 106

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 52  GIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLL 104
           GIFR PG    + +L+   D+ D+ L  ++    +  A L+K + REL E L+
Sbjct: 42  GIFRVPGDIDEVNELKLRVDQWDYPLSGLED--PHVPASLLKLWLRELEEPLI 92

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 17  FGVPL--LVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD 74
           FGVPL  LV  +     +P  +    + +     D IG++R  G   + ++LR+ A E +
Sbjct: 1   FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRD-AFERN 59

Query: 75  FKLDEVDSQQAYDV---ADLVKQYFRELPEVLLT 105
               E+  +   D+     ++K Y RELPE L+T
Sbjct: 60  SAAVELSEELYPDINVITGVLKDYLRELPEPLIT 93

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 207

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
cd04375	220	RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator	99.98
cd04408	200	RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator	99.97
cd04383	188	RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato	99.97
cd04378	203	RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas	99.97
cd04409	211	RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato	99.97
cd04372	194	RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-	99.97
cd04407	186	RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas	99.97
cd04387	196	RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr	99.97
cd04384	195	RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato	99.97
cd04381	182	RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa	99.97
cd04406	186	RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas	99.97
cd04403	187	RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G	99.97
cd04379	207	RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator	99.97
cd04390	199	RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas	99.96
cd04397	213	RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato	99.96
cd04396	225	RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas	99.96
cd04402	192	RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac	99.96
cd04386	203	RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa	99.96
cd04391	216	RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac	99.96
cd04393	189	RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac	99.96
cd04377	186	RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-	99.96
cd04373	185	RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator	99.96
cd04398	192	RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato	99.96
cd04404	195	RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-	99.96
cd04400	190	RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato	99.95
KOG2200|consensus	674		99.95
cd04394	202	RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-	99.95
cd04389	187	RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator	99.95
cd04395	196	RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac	99.95
cd04399	212	RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato	99.95
cd04382	193	RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-	99.95
cd04388	200	RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr	99.94
cd04385	184	RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator	99.94
cd04376	206	RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti	99.94
cd04392	208	RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac	99.92
cd04380	220	RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato	99.91
cd04374	203	RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein	99.9
KOG4269|consensus	1112		99.89
smart00324	174	RhoGAP GTPase-activator protein for Rho-like GTPas	99.88
KOG2710|consensus	412		99.87
KOG1450|consensus	650		99.86
PF00620	151	RhoGAP: RhoGAP domain; InterPro: IPR000198 Members	99.86
cd00159	169	RhoGAP RhoGAP: GTPase-activator protein (GAP) for	99.85
KOG4407|consensus	1973		99.82
KOG4270|consensus	577		99.79
KOG4406|consensus	467		99.78
KOG1453|consensus	918		99.78
KOG3564|consensus	604		99.77
KOG1452|consensus	442		99.71
KOG1117|consensus	1186		99.6
KOG4271|consensus	1100		99.53
KOG1451|consensus	812		99.52
cd04401	198	RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato	99.18
cd04405	235	RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas	99.15
KOG4724|consensus	741		99.15
KOG3565|consensus	640		98.36
KOG4370|consensus	514		98.3
PF08101	420	DUF1708: Domain of unknown function (DUF1708); Int	97.73
KOG4724|consensus	741		97.71
KOG1453|consensus	918		86.81

>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

Probab=99.98  E-value=8.6e-32  Score=191.80  Aligned_cols=105  Identities=62%  Similarity=0.981  Sum_probs=97.7

Q ss_pred             CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH
Q psy8293          14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVK   93 (124)
Q Consensus        14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK   93 (124)
                      +++||+||+.++++.|..||.+|..|++||+.+|+++|||||++|+..++++|++.+|.+....+ ++..++|+||++||
T Consensus         2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~-~~~~~~~~va~lLK   80 (220)
T cd04375           2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVN-YDGQQAYDVADMLK   80 (220)
T ss_pred             CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccC-cccccHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999998755555 67789999999999


Q ss_pred             HHHhhCCCCCCChHHHHHHHHHhccc
Q psy8293          94 QYFRELPEVLLTNKSSETFMSIFQPI  119 (124)
Q Consensus        94 ~flr~Lp~PLl~~~~~~~~~~~~~~~  119 (124)
                      .|||+||+||+|.++|+.|+++++..
T Consensus        81 ~flReLPePLlt~~l~~~fi~~~~~~  106 (220)
T cd04375          81 QYFRDLPEPLLTNKLSETFIAIFQYV  106 (220)
T ss_pred             HHHHhCCCccCCHHHHHHHHHHHhcC
Confidence            99999999999999999999987644

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

Probab=99.97  E-value=1.2e-31  Score=188.78  Aligned_cols=100  Identities=23%  Similarity=0.382  Sum_probs=94.4

Q ss_pred             cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8293          17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYF   96 (124)
Q Consensus        17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fl   96 (124)
                      ||++|+.++++++..||.+|.+|++||+++|+++|||||++|+.++++++++.+|++...++ +...++|+||++||.||
T Consensus         1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~-~~~~~~h~va~lLK~fL   79 (200)
T cd04408           1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVD-LSGHSPHDITSVLKHFL   79 (200)
T ss_pred             CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccC-cccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998855556 66789999999999999


Q ss_pred             hhCCCCCCChHHHHHHHHHhc
Q psy8293          97 RELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        97 r~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      |+||+||+|.++|+.|+++++
T Consensus        80 ReLPePLi~~~~y~~~~~~~~  100 (200)
T cd04408          80 KELPEPVLPFQLYDDFIALAK  100 (200)
T ss_pred             HhCCCccCCHHHHHHHHHHHH
Confidence            999999999999999998764

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

Probab=99.97  E-value=5.7e-31  Score=183.69  Aligned_cols=103  Identities=24%  Similarity=0.397  Sum_probs=93.9

Q ss_pred             cccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCC-CCCCCCHHHHHHHHH
Q psy8293          15 SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLD-EVDSQQAYDVADLVK   93 (124)
Q Consensus        15 ~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~-~~~~~~~~~va~~lK   93 (124)
                      ++||++|+++++.++..||.++.+|++||+++|+++|||||++|+.++++++++.+|+|..... ..+..|+|+||++||
T Consensus         1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK   80 (188)
T cd04383           1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK   80 (188)
T ss_pred             CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999999999999998843321 134679999999999


Q ss_pred             HHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          94 QYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        94 ~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      .|||+||+||+|.+.|+.|+++++
T Consensus        81 ~fLReLPepLip~~~~~~~~~~~~  104 (188)
T cd04383          81 LYFRGLENPLFPKERFEDLMSCVK  104 (188)
T ss_pred             HHHHhCCCccCCHHHHHHHHHHHh
Confidence            999999999999999999998864

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group

>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

Probab=99.97  E-value=5.2e-31  Score=185.82  Aligned_cols=100  Identities=23%  Similarity=0.352  Sum_probs=94.3

Q ss_pred             cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8293          17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYF   96 (124)
Q Consensus        17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fl   96 (124)
                      ||+||+.++++++..||.+|.+|+++|+++|+++|||||++|+..+++++++.+|++...++ +...++|+||++||.||
T Consensus         1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~-~~~~~~h~va~~LK~fL   79 (203)
T cd04378           1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVE-LSELSPHDISSVLKLFL   79 (203)
T ss_pred             CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccc-cccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998855555 66789999999999999


Q ss_pred             hhCCCCCCChHHHHHHHHHhc
Q psy8293          97 RELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        97 r~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      |+||+||+|.++|+.|+++++
T Consensus        80 ReLpePlip~~~y~~~~~~~~  100 (203)
T cd04378          80 RQLPEPLILFRLYNDFIALAK  100 (203)
T ss_pred             HhCCCccCCHHHHHHHHHHHH
Confidence            999999999999999998875

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge

>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

Probab=99.97  E-value=6e-31  Score=186.47  Aligned_cols=100  Identities=23%  Similarity=0.369  Sum_probs=93.8

Q ss_pred             cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8293          17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYF   96 (124)
Q Consensus        17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fl   96 (124)
                      ||+||++++++++..||.+|.+|+++|+++|+++|||||++|+..+++++++.+|++...++ ++..|+|+||++||.||
T Consensus         1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~-~~~~~~h~va~~LK~fL   79 (211)
T cd04409           1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVE-LSELSPHDISNVLKLYL   79 (211)
T ss_pred             CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccc-cccCCHHHHHHHHHHHH
Confidence            99999999999988999999999999999999999999999999999999999998854455 56789999999999999


Q ss_pred             hhCCCCCCChHHHHHHHHHhc
Q psy8293          97 RELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        97 r~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      |+||+||+|.++|+.|+++++
T Consensus        80 ReLPePLi~~~~~~~~~~~~~  100 (211)
T cd04409          80 RQLPEPLILFRLYNEFIGLAK  100 (211)
T ss_pred             HhCCCcccCHHHHHHHHHHHH
Confidence            999999999999999998874

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

Probab=99.97  E-value=1e-30  Score=183.19  Aligned_cols=101  Identities=18%  Similarity=0.271  Sum_probs=92.0

Q ss_pred             cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCC--CCCCCHHHHHHHHHH
Q psy8293          17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDE--VDSQQAYDVADLVKQ   94 (124)
Q Consensus        17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~--~~~~~~~~va~~lK~   94 (124)
                      ||+||++++++++..||.++.+|++||+++|+++|||||++|+.++++++++.+|++....++  ....|+|+||++||.
T Consensus         1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~   80 (194)
T cd04372           1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL   80 (194)
T ss_pred             CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence            999999999999989999999999999999999999999999999999999999976454541  123489999999999


Q ss_pred             HHhhCCCCCCChHHHHHHHHHhc
Q psy8293          95 YFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        95 flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      |||+||+||+|.+.|+.|+++.+
T Consensus        81 flReLP~pLi~~~~~~~~~~~~~  103 (194)
T cd04372          81 YFRDLPIPVITYDTYPKFIDAAK  103 (194)
T ss_pred             HHHhCCCccCCHHHHHHHHHHHh
Confidence            99999999999999999999875

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT

>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

Probab=99.97  E-value=1.1e-30  Score=181.95  Aligned_cols=99  Identities=23%  Similarity=0.379  Sum_probs=91.7

Q ss_pred             cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8293          17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYF   96 (124)
Q Consensus        17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fl   96 (124)
                      ||+||+.++. ++..||.++..|++||+++|+++|||||++|+..+++++++.+|.+...++ +...|+|+||++||.||
T Consensus         1 FGv~L~~~~~-~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~-~~~~d~h~va~lLK~fl   78 (186)
T cd04407           1 FGVRVGSLTS-NKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVK-LENYPIHAITGLLKQWL   78 (186)
T ss_pred             CCCcHHHHHh-CCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccC-cccCCHHHHHHHHHHHH
Confidence            9999999875 577899999999999999999999999999999999999999998865666 66789999999999999


Q ss_pred             hhCCCCCCChHHHHHHHHHhc
Q psy8293          97 RELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        97 r~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      |+||+||+|+++|+.|+++.+
T Consensus        79 ReLPepLi~~~~~~~~~~~~~   99 (186)
T cd04407          79 RELPEPLMTFAQYNDFLRAVE   99 (186)
T ss_pred             HhCCCccCCHHHHHHHHHHHH
Confidence            999999999999999998764

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

Probab=99.97  E-value=1.6e-30  Score=182.41  Aligned_cols=101  Identities=27%  Similarity=0.425  Sum_probs=92.6

Q ss_pred             cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCC-CCCCCCHHHHHHHHHHH
Q psy8293          17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLD-EVDSQQAYDVADLVKQY   95 (124)
Q Consensus        17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~-~~~~~~~~~va~~lK~f   95 (124)
                      ||+||+.++++++..||.++.+|++||+++|+++|||||++|+..+++++++.+|++..... ..+..|+|+||++||.|
T Consensus         1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f   80 (196)
T cd04387           1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY   80 (196)
T ss_pred             CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998743321 24578999999999999


Q ss_pred             HhhCCCCCCChHHHHHHHHHhc
Q psy8293          96 FRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        96 lr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      ||+||+||+|+++|+.|++++.
T Consensus        81 LReLPePLip~~~y~~~~~~~~  102 (196)
T cd04387          81 FRELPEPLFTDELYPNFAEGIA  102 (196)
T ss_pred             HHhCCCccCCHHHHHHHHHHHH
Confidence            9999999999999999998764

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch

>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

Probab=99.97  E-value=2.4e-30  Score=181.41  Aligned_cols=102  Identities=32%  Similarity=0.468  Sum_probs=92.3

Q ss_pred             cccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC---CCCCHHHHHHH
Q psy8293          15 SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV---DSQQAYDVADL   91 (124)
Q Consensus        15 ~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~---~~~~~~~va~~   91 (124)
                      ++||++|++++++.+..||.++..|++||+++|+ +|||||++|+.++++++++.+|++. ..++.   ...|+|+||++
T Consensus         1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~-~~~~~~~~~~~d~h~va~l   78 (195)
T cd04384           1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQ-IPDLTKDVYIQDIHSVSSL   78 (195)
T ss_pred             CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCC-CCCcccccccccHHHHHHH
Confidence            5899999999999999999999999999999998 6999999999999999999999883 33311   24599999999


Q ss_pred             HHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          92 VKQYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        92 lK~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      ||.|||+||+||+|.++|+.|+++++.
T Consensus        79 LK~flReLPePLi~~~~y~~~~~~~~~  105 (195)
T cd04384          79 CKLYFRELPNPLLTYQLYEKFSEAVSA  105 (195)
T ss_pred             HHHHHHhCCCccCCHHHHHHHHHHHhc
Confidence            999999999999999999999998764

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

Probab=99.97  E-value=2.9e-30  Score=179.33  Aligned_cols=100  Identities=26%  Similarity=0.485  Sum_probs=92.3

Q ss_pred             cccchHHHHhhh----CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q psy8293          17 FGVPLLVNIQKT----GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLV   92 (124)
Q Consensus        17 FG~~L~~~~~~~----~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~l   92 (124)
                      ||+||++++++.    |..||.++..|++||+++|+++|||||++|+..+++++++.+|++ ..++ ++..|+|+||++|
T Consensus         1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~-~~~~-~~~~d~h~va~lL   78 (182)
T cd04381           1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRR-ESPN-LEEYEPPTVASLL   78 (182)
T ss_pred             CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCC-CCCC-ccccChHHHHHHH
Confidence            999999999885    457999999999999999999999999999999999999999988 4566 6678999999999


Q ss_pred             HHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          93 KQYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        93 K~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      |.|||+||+||+|.++|+.|.++++.
T Consensus        79 K~fLReLP~pLi~~~~~~~~~~~~~~  104 (182)
T cd04381          79 KQYLRELPEPLLTKELMPRFEEACGR  104 (182)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHcCC
Confidence            99999999999999999999988753

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int

>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

Probab=99.97  E-value=2.8e-30  Score=179.93  Aligned_cols=99  Identities=25%  Similarity=0.404  Sum_probs=91.0

Q ss_pred             cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8293          17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYF   96 (124)
Q Consensus        17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fl   96 (124)
                      ||++|+.++.. +..||.++.+|++||+++|+++|||||++|+.++++++++.+|.+...++ ++..|+|+||++||.||
T Consensus         1 FGv~L~~l~~~-~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~-~~~~d~h~va~lLK~fL   78 (186)
T cd04406           1 FGVELSRLTSE-DRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVN-LDDYNIHVIASVFKQWL   78 (186)
T ss_pred             CCCchHHHHHC-CCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCC-cccCCHHHHHHHHHHHH
Confidence            99999988765 56799999999999999999999999999999999999999998754555 66789999999999999


Q ss_pred             hhCCCCCCChHHHHHHHHHhc
Q psy8293          97 RELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        97 r~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      |+||+||+|.++|+.|+++++
T Consensus        79 ReLPePLi~~~~y~~~~~~~~   99 (186)
T cd04406          79 RDLPNPLMTFELYEEFLRAMG   99 (186)
T ss_pred             HhCCCccCCHHHHHHHHHHHh
Confidence            999999999999999998864

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife

>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

Probab=99.97  E-value=4.9e-30  Score=178.86  Aligned_cols=101  Identities=31%  Similarity=0.400  Sum_probs=92.2

Q ss_pred             cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCC--CCCCCCHHHHHHHHHH
Q psy8293          17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLD--EVDSQQAYDVADLVKQ   94 (124)
Q Consensus        17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~--~~~~~~~~~va~~lK~   94 (124)
                      ||+||++++++++..||.++..|++||+++|+++|||||++|+.+.+++++..+|.+ ..++  .....|+|+||++||.
T Consensus         1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~-~~~~~~~~~~~d~h~va~lLK~   79 (187)
T cd04403           1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHD-EKLDLDDSKWEDIHVITGALKL   79 (187)
T ss_pred             CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCC-CCCCccccccccHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999987 3333  1234589999999999


Q ss_pred             HHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          95 YFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        95 flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      |||+||+||+|++.|+.|+++.+.
T Consensus        80 fLReLPepLi~~~~~~~~~~~~~~  103 (187)
T cd04403          80 FFRELPEPLFPYSLFNDFVAAIKL  103 (187)
T ss_pred             HHhcCCCCcCCHHHHHHHHHHHHC
Confidence            999999999999999999988753

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

Probab=99.97  E-value=8.7e-30  Score=179.97  Aligned_cols=101  Identities=23%  Similarity=0.403  Sum_probs=90.0

Q ss_pred             cccchHHHHhhh--CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCC-CC-CCCHHHHHHHH
Q psy8293          17 FGVPLLVNIQKT--GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDE-VD-SQQAYDVADLV   92 (124)
Q Consensus        17 FG~~L~~~~~~~--~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~-~~-~~~~~~va~~l   92 (124)
                      ||+||+++++++  +..||.+|++|++||+++|+++|||||++|+.+++++|++.+|++....++ .+ ..|+|+||++|
T Consensus         1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL   80 (207)
T cd04379           1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL   80 (207)
T ss_pred             CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence            999999999985  467999999999999999999999999999999999999999987443431 12 24899999999


Q ss_pred             HHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          93 KQYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        93 K~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      |.|||+||+||+|.++|+.|+++++
T Consensus        81 K~fLReLPePLip~~~y~~~~~~~~  105 (207)
T cd04379          81 KDYLRELPEPLITPQLYEMVLEALA  105 (207)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHh
Confidence            9999999999999999999998864

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

Probab=99.96  E-value=1.6e-29  Score=177.75  Aligned_cols=102  Identities=25%  Similarity=0.389  Sum_probs=90.9

Q ss_pred             cccccchHHHHhhhC----CCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHH
Q psy8293          15 SVFGVPLLVNIQKTG----YALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVAD   90 (124)
Q Consensus        15 ~vFG~~L~~~~~~~~----~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~   90 (124)
                      ++||+||++++..++    ..||.++..|++||+++|+++|||||++|+...++++++.+|++ ...++....|+|+||+
T Consensus         1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~-~~~~~~~~~d~h~va~   79 (199)
T cd04390           1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAG-ERPSFDSDTDVHTVAS   79 (199)
T ss_pred             CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCC-CCCCccccCCHHHHHH
Confidence            589999999987653    45999999999999999999999999999999999999999988 3344224679999999


Q ss_pred             HHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          91 LVKQYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        91 ~lK~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      +||.|||+||+||+|.+.|+.|+++.+
T Consensus        80 lLK~fLReLPePLi~~~~y~~~~~~~~  106 (199)
T cd04390          80 LLKLYLRELPEPVIPWAQYEDFLSCAQ  106 (199)
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHHh
Confidence            999999999999999999999998764

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r

>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

Probab=99.96  E-value=1.5e-29  Score=179.53  Aligned_cols=100  Identities=31%  Similarity=0.470  Sum_probs=91.6

Q ss_pred             cccchHHHHhhhCC-----------CCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCC-CCCCCCCC
Q psy8293          17 FGVPLLVNIQKTGY-----------ALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFK-LDEVDSQQ   84 (124)
Q Consensus        17 FG~~L~~~~~~~~~-----------~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~-~~~~~~~~   84 (124)
                      ||+||+.+++++|.           .||.++..|++||+++|+++|||||++|+..+++++++.+|.+... ++ +...+
T Consensus         1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d-~~~~~   79 (213)
T cd04397           1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPD-LSKEN   79 (213)
T ss_pred             CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccc-cccCc
Confidence            99999999999865           5999999999999999999999999999999999999999987433 35 55679


Q ss_pred             HHHHHHHHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          85 AYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        85 ~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      +|+||++||.|||+||+||+|.++|+.|+++.+
T Consensus        80 ~~~va~lLK~flReLPepLi~~~~y~~~i~~~~  112 (213)
T cd04397          80 PVQLAALLKKFLRELPDPLLTFKLYRLWISSQK  112 (213)
T ss_pred             HHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHc
Confidence            999999999999999999999999999998764

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

Probab=99.96  E-value=4.4e-29  Score=178.45  Aligned_cols=101  Identities=28%  Similarity=0.418  Sum_probs=91.1

Q ss_pred             ccccchHHHHhhhC---------------CCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCC---CCC
Q psy8293          16 VFGVPLLVNIQKTG---------------YALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD---FKL   77 (124)
Q Consensus        16 vFG~~L~~~~~~~~---------------~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~---~~~   77 (124)
                      ||||+|++.++..+               ..||.+|.+|++||+++|+++|||||++|+..+++++++.+|++.   ..+
T Consensus         1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~   80 (225)
T cd04396           1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF   80 (225)
T ss_pred             CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence            79999999888764               258999999999999999999999999999999999999999763   345


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          78 DEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        78 ~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      + ++.+++|+||++||.|||+||+||+|.++|+.|.+++.
T Consensus        81 ~-~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~  119 (225)
T cd04396          81 D-WDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLR  119 (225)
T ss_pred             C-ccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHH
Confidence            5 56789999999999999999999999999999988764

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

Probab=99.96  E-value=5.9e-29  Score=174.04  Aligned_cols=98  Identities=26%  Similarity=0.457  Sum_probs=91.9

Q ss_pred             ccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHH
Q psy8293          16 VFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQY   95 (124)
Q Consensus        16 vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~f   95 (124)
                      +||+||+..++  +..||.++..|++||+++|+++|||||++|+.++++++++.+|++ ..++ ++..|+|++|+++|.|
T Consensus         1 ~FG~~L~~~~~--~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~-~~~~-~~~~~~~~va~~lK~f   76 (192)
T cd04402           1 LFGQPLSNICE--DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSG-VEVD-LKAEPVLLLASVLKDF   76 (192)
T ss_pred             CCCCcHHHHhC--CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCC-CCCC-CccCCHHHHHHHHHHH
Confidence            69999999988  667999999999999999999999999999999999999999988 5566 6788999999999999


Q ss_pred             HhhCCCCCCChHHHHHHHHHhc
Q psy8293          96 FRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        96 lr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      ||+||+||+|.+.|+.|+++++
T Consensus        77 lreLpepLi~~~~~~~~~~~~~   98 (192)
T cd04402          77 LRNIPGSLLSSDLYEEWMSALD   98 (192)
T ss_pred             HHhCCCccCCHHHHHHHHHHHc
Confidence            9999999999999999998875

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

Probab=99.96  E-value=7.3e-29  Score=174.90  Aligned_cols=104  Identities=28%  Similarity=0.436  Sum_probs=94.3

Q ss_pred             CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHH
Q psy8293          14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDE-VDSQQAYDVADLV   92 (124)
Q Consensus        14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~-~~~~~~~~va~~l   92 (124)
                      +++||+||++.+++++..||.++..|+.||+++|+++|||||++|+...++++++.+|.+....+. ....|+|+||++|
T Consensus         2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l   81 (203)
T cd04386           2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL   81 (203)
T ss_pred             CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence            589999999999999889999999999999999999999999999999999999999988433321 2345899999999


Q ss_pred             HHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          93 KQYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        93 K~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      |.|||+||+||+|.++|+.|+++++
T Consensus        82 K~fLreLp~pli~~~~~~~~~~~~~  106 (203)
T cd04386          82 KSYLRELPDPLLTYNLYEDWVQAAN  106 (203)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHc
Confidence            9999999999999999999998864

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

Probab=99.96  E-value=5.3e-29  Score=177.08  Aligned_cols=101  Identities=29%  Similarity=0.398  Sum_probs=91.2

Q ss_pred             ccccchHHHHhhh-----CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCC--CCCCCCCCCCHHHH
Q psy8293          16 VFGVPLLVNIQKT-----GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD--FKLDEVDSQQAYDV   88 (124)
Q Consensus        16 vFG~~L~~~~~~~-----~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~--~~~~~~~~~~~~~v   88 (124)
                      |||+||+++++++     +..||.++..|+++|+++|+++|||||++|+.++++++++.+|.+.  ..++ ++..|+|+|
T Consensus         1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~-~~~~~~h~v   79 (216)
T cd04391           1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFL-WDQVKQHDA   79 (216)
T ss_pred             CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccc-cccCCHHHH
Confidence            7999999999985     3579999999999999999999999999999999999999999752  2344 667899999


Q ss_pred             HHHHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          89 ADLVKQYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        89 a~~lK~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      |++||.|||+||+||+|.++|+.|.++.+
T Consensus        80 a~lLK~flReLPePLi~~~~~~~~~~~~~  108 (216)
T cd04391          80 ASLLKLFIRELPQPLLTVEYLPAFYSVQG  108 (216)
T ss_pred             HHHHHHHHHhCCCccCCHHHHHHHHHHHc
Confidence            99999999999999999999999988653

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

Probab=99.96  E-value=7.8e-29  Score=173.03  Aligned_cols=103  Identities=27%  Similarity=0.420  Sum_probs=92.9

Q ss_pred             cccccchHHHHhhh--CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q psy8293          15 SVFGVPLLVNIQKT--GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLV   92 (124)
Q Consensus        15 ~vFG~~L~~~~~~~--~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~l   92 (124)
                      ++||+||++++++.  +..||.++..|++||+++|+++|||||++|+...++++++.+|.+ ..+++....|+|++|+++
T Consensus         1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~-~~~~~~~~~d~~~va~~l   79 (189)
T cd04393           1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSG-EEVDLSKEADVCSAASLL   79 (189)
T ss_pred             CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCC-CCCCccccCCHHHHHHHH
Confidence            58999999998864  457999999999999999999999999999999999999999988 455523457999999999


Q ss_pred             HHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          93 KQYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        93 K~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      |.|||+||+||+|.+.|+.|+++++.
T Consensus        80 K~flr~Lp~pLi~~~~~~~l~~~~~~  105 (189)
T cd04393          80 RLFLQELPEGLIPASLQIRLMQLYQD  105 (189)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999988754

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.

>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

Probab=99.96  E-value=1.1e-28  Score=171.87  Aligned_cols=99  Identities=26%  Similarity=0.410  Sum_probs=91.7

Q ss_pred             cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8293          17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYF   96 (124)
Q Consensus        17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fl   96 (124)
                      ||+||+.++.. +..||.++..|++||+++|+++|||||++|+..+++++++.+|++...++ ++..|+|+||++||.||
T Consensus         1 FG~~L~~~~~~-~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~-~~~~~~~~va~~LK~fl   78 (186)
T cd04377           1 FGVSLSSLTSE-DRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVN-LEDYPIHVITSVLKQWL   78 (186)
T ss_pred             CCCCHHHHHhC-CCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccC-cccCCHHHHHHHHHHHH
Confidence            99999988764 67899999999999999999999999999999999999999998855666 67789999999999999


Q ss_pred             hhCCCCCCChHHHHHHHHHhc
Q psy8293          97 RELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        97 r~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      |+||+||+|++.|+.|+++++
T Consensus        79 r~LpepLi~~~~~~~~~~~~~   99 (186)
T cd04377          79 RELPEPLMTFELYENFLRAME   99 (186)
T ss_pred             HcCCCccCCHHHHHHHHHHHh
Confidence            999999999999999998764

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

Probab=99.96  E-value=1.1e-28  Score=171.89  Aligned_cols=99  Identities=26%  Similarity=0.441  Sum_probs=90.0

Q ss_pred             cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHHHHH
Q psy8293          17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDE-VDSQQAYDVADLVKQY   95 (124)
Q Consensus        17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~-~~~~~~~~va~~lK~f   95 (124)
                      ||+||++++. .+..||.++..|++||+++|+++|||||++|+..+++++++.+|++ ...++ ..+.|+|+||+++|.|
T Consensus         1 FG~pL~~~~~-~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~-~~~~~~~~~~~~~~va~~lK~f   78 (185)
T cd04373           1 FGVPLANVVT-SEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQD-HNLDLVSKDFTVNAVAGALKSF   78 (185)
T ss_pred             CCCchHHHHh-CCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcC-CCCCcccccCcHHHHHHHHHHH
Confidence            9999999888 4778999999999999999999999999999999999999999987 34442 2456899999999999


Q ss_pred             HhhCCCCCCChHHHHHHHHHhc
Q psy8293          96 FRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        96 lr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      ||+||+||+|+++|+.|.+++.
T Consensus        79 LreLPePlip~~~~~~~~~~~~  100 (185)
T cd04373          79 FSELPDPLIPYSMHLELVEAAK  100 (185)
T ss_pred             HhcCCchhccHHHHHHHHHHHh
Confidence            9999999999999999998865

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

Probab=99.96  E-value=3.5e-28  Score=170.02  Aligned_cols=102  Identities=32%  Similarity=0.483  Sum_probs=92.4

Q ss_pred             cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC----CCCCHHHHHHHH
Q psy8293          17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV----DSQQAYDVADLV   92 (124)
Q Consensus        17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~----~~~~~~~va~~l   92 (124)
                      ||+||++++++++..||.++..|+++|+++|+++|||||++|+...++++++.+|++....+..    ...|+|+||++|
T Consensus         1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L   80 (192)
T cd04398           1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL   80 (192)
T ss_pred             CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence            8999999999999899999999999999999999999999999999999999999875433311    245899999999


Q ss_pred             HHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          93 KQYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        93 K~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      |.|||+||+||+|.+.|+.|+++.+.
T Consensus        81 K~fLreLp~pLi~~~~~~~~~~~~~~  106 (192)
T cd04398          81 KLFFRELPEPLLTKALSREFIEAAKI  106 (192)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHhC
Confidence            99999999999999999999988653

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

Probab=99.96  E-value=6e-28  Score=169.25  Aligned_cols=102  Identities=25%  Similarity=0.360  Sum_probs=92.5

Q ss_pred             CcccccchHHHHhhhC--CCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCC-CHHHHHH
Q psy8293          14 NSVFGVPLLVNIQKTG--YALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQ-QAYDVAD   90 (124)
Q Consensus        14 ~~vFG~~L~~~~~~~~--~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~-~~~~va~   90 (124)
                      .++||+||+.++++.+  ..||.+|..|++||+++|+++|||||++|+.+.++++++.+|++ ..++ +... |+|+||+
T Consensus         3 ~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~-~~~~-~~~~~d~~~va~   80 (195)
T cd04404           3 TQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMG-EPVD-FDQYEDVHLPAV   80 (195)
T ss_pred             CCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCC-CCCC-cccccCHHHHHH
Confidence            5799999999988764  67999999999999999999999999999999999999999987 4455 4454 9999999


Q ss_pred             HHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          91 LVKQYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        91 ~lK~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      +||.|||+||+||+|.+.|+.+.++.+
T Consensus        81 ~LK~~lr~Lp~pLi~~~~~~~l~~~~~  107 (195)
T cd04404          81 ILKTFLRELPEPLLTFDLYDDIVGFLN  107 (195)
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHHc
Confidence            999999999999999999999987653

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

Probab=99.95  E-value=5.6e-28  Score=168.85  Aligned_cols=102  Identities=29%  Similarity=0.502  Sum_probs=90.2

Q ss_pred             ccccchHHHHhhh-----CCCCcHHHHHHHHHHHhcC-CCccCeeecCCChHHHHHHHHHHhcCCCCCCCC---CCCCHH
Q psy8293          16 VFGVPLLVNIQKT-----GYALPKFIISSFEWLINNA-SDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV---DSQQAY   86 (124)
Q Consensus        16 vFG~~L~~~~~~~-----~~~vP~~l~~~~~~l~~~g-l~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~---~~~~~~   86 (124)
                      +||+||+++++.+     +..||.+|.+|++||+++| +.+|||||++|+...++++++.+|++ ..++..   ...|+|
T Consensus         1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~-~~~~~~~~~~~~d~h   79 (190)
T cd04400           1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTE-YDVDLFSSSLYPDVH   79 (190)
T ss_pred             CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCC-CCCCccccccccCHH
Confidence            7999999999875     3579999999999999986 89999999999999999999999987 344422   356899


Q ss_pred             HHHHHHHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          87 DVADLVKQYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        87 ~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      +||+++|.|||+||+||+|.++|+.|.++.+.
T Consensus        80 ~va~lLK~flreLP~PLi~~~~~~~~~~~~~~  111 (190)
T cd04400          80 TVAGLLKLYLRELPTLILGGELHNDFKRLVEE  111 (190)
T ss_pred             HHHHHHHHHHHhCCcccCCHHHHHHHHHHHhc
Confidence            99999999999999999999999999987753

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG2200|consensus

Probab=99.95  E-value=1.3e-28  Score=190.67  Aligned_cols=117  Identities=46%  Similarity=0.694  Sum_probs=109.4

Q ss_pred             CCCCCCCCCCCCcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCC--CCCC
Q psy8293           3 KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFK--LDEV   80 (124)
Q Consensus         3 ~~~k~~~~~~~~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~--~~~~   80 (124)
                      +|+|.++.++ +.||||||..++++.|.++|.+|.+.+.||+++|++++||||++|.+++|++|++.++.....  +. |
T Consensus       288 kr~kk~d~kd-~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~-~  365 (674)
T KOG2200|consen  288 KRAKKVDGKD-GGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFN-W  365 (674)
T ss_pred             hcccCCccCC-CceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccc-c
Confidence            6889999999 999999999999999999999999999999999999999999999999999999999865333  66 8


Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHhccccc
Q psy8293          81 DSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPIYM  121 (124)
Q Consensus        81 ~~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~~~~  121 (124)
                      +....|+||++||.|||+||+||+|.++.++|+++++-+|.
T Consensus       366 d~~~~~DvAdlLKqffRdLPePL~t~k~~~aF~~i~~~~pk  406 (674)
T KOG2200|consen  366 DSQSAHDVADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPK  406 (674)
T ss_pred             chhhhhHHHHHHHHHHHhCCcccchhhHHHHHHHHHhcCcH
Confidence            88899999999999999999999999999999999987763

>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

Probab=99.95  E-value=7.5e-28  Score=169.64  Aligned_cols=98  Identities=34%  Similarity=0.534  Sum_probs=87.5

Q ss_pred             ccccchHHHHhh---hCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q psy8293          16 VFGVPLLVNIQK---TGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLV   92 (124)
Q Consensus        16 vFG~~L~~~~~~---~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~l   92 (124)
                      +||+||++++..   ++..||.++..|++||++ ++++|||||++|+.++++++++.+|++.. .  ....++|+||++|
T Consensus         1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~-~--~~~~~~~~vaslL   76 (202)
T cd04394           1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEA-C--LSSALPCDVAGLL   76 (202)
T ss_pred             CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCC-C--ccccCHHHHHHHH
Confidence            799999998865   356799999999999987 59999999999999999999999998843 2  2456899999999


Q ss_pred             HHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          93 KQYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        93 K~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      |.|||+||+||+|.++|+.|+++.+
T Consensus        77 K~flReLPePLi~~~~~~~~~~~~~  101 (202)
T cd04394          77 KQFFRELPEPLLPYDLHEALLKAQE  101 (202)
T ss_pred             HHHHhcCCCcCCCHHHHHHHHHHHh
Confidence            9999999999999999999998764

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

Probab=99.95  E-value=1.1e-27  Score=166.99  Aligned_cols=99  Identities=24%  Similarity=0.312  Sum_probs=88.0

Q ss_pred             cccchHHHHhhhC-----CCCcHHHHHHHHHHHh-cCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHH
Q psy8293          17 FGVPLLVNIQKTG-----YALPKFIISSFEWLIN-NASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVAD   90 (124)
Q Consensus        17 FG~~L~~~~~~~~-----~~vP~~l~~~~~~l~~-~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~   90 (124)
                      ||+||++++++++     ..||.++..|++++.+ +|+.+|||||++|+...++++++.+|++.  .+.....|+|+||+
T Consensus         1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~--~~~~~~~d~h~va~   78 (187)
T cd04389           1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWD--YPLSGLEDPHVPAS   78 (187)
T ss_pred             CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCC--CCccccCCHHHHHH
Confidence            9999999997763     4699999999999865 79999999999999999999999999873  23234569999999


Q ss_pred             HHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          91 LVKQYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        91 ~lK~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      +||.|||+||+||+|.+.|+.++++.+
T Consensus        79 lLK~fLReLpePli~~~~~~~~i~~~~  105 (187)
T cd04389          79 LLKLWLRELEEPLIPDALYQQCISASE  105 (187)
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHhhc
Confidence            999999999999999999999998754

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

Probab=99.95  E-value=1.7e-27  Score=167.11  Aligned_cols=102  Identities=27%  Similarity=0.429  Sum_probs=90.4

Q ss_pred             ccccchHHHHhhh-CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC--CCCCHHHHHHHH
Q psy8293          16 VFGVPLLVNIQKT-GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV--DSQQAYDVADLV   92 (124)
Q Consensus        16 vFG~~L~~~~~~~-~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~--~~~~~~~va~~l   92 (124)
                      +||+||++..... +..||.+++.|+++|+++|+++|||||++|+..+++++++.+|++...++..  +..|+|++|++|
T Consensus         1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll   80 (196)
T cd04395           1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL   80 (196)
T ss_pred             CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence            5999999887754 4679999999999999999999999999999999999999999885444422  245899999999


Q ss_pred             HHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          93 KQYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        93 K~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      |.|||+||+||+|.+.|+.|+++.+
T Consensus        81 K~flr~Lp~pli~~~~~~~~i~~~~  105 (196)
T cd04395          81 KSFFRKLPEPLFTNELYPDFIEANR  105 (196)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHc
Confidence            9999999999999999999988754

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

Probab=99.95  E-value=3.4e-27  Score=167.38  Aligned_cols=102  Identities=20%  Similarity=0.308  Sum_probs=89.5

Q ss_pred             cccchHHHHhhhCCCCcHHHHHHHHHHHhcC--CCcc----CeeecCCChHHHHHHHHHHhcCCCCCCC----CCCCCHH
Q psy8293          17 FGVPLLVNIQKTGYALPKFIISSFEWLINNA--SDQI----GIFRKPGVKTRIQKLREMADEVDFKLDE----VDSQQAY   86 (124)
Q Consensus        17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~g--l~~e----GifR~~g~~~~i~~l~~~~~~~~~~~~~----~~~~~~~   86 (124)
                      ||+||+.++++++..||.+|.+|++||+++|  +..+    ||||++|+.+.+++||+.+|++ ...+.    ++..|+|
T Consensus         1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~-~~~~~~~~~~~~~dv~   79 (212)
T cd04399           1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKP-KKPDKEVIILKKFEPS   79 (212)
T ss_pred             CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCC-CCcchhhhccccCCHH
Confidence            9999999999998899999999999999965  3333    9999999999999999999987 33331    3467899


Q ss_pred             HHHHHHHHHHhhCCCCCCChHHHHHHHHHhccc
Q psy8293          87 DVADLVKQYFRELPEVLLTNKSSETFMSIFQPI  119 (124)
Q Consensus        87 ~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~~  119 (124)
                      +||++||.|||+||+||+|+++|+.|.++++..
T Consensus        80 ~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~  112 (212)
T cd04399          80 TVASVLKLYLLELPDSLIPHDIYDLIRSLYSAY  112 (212)
T ss_pred             HHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999998876543

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

Probab=99.95  E-value=3.2e-27  Score=165.36  Aligned_cols=97  Identities=18%  Similarity=0.210  Sum_probs=85.8

Q ss_pred             hHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCC
Q psy8293          21 LLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELP  100 (124)
Q Consensus        21 L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp  100 (124)
                      |.++-..++..||.++.+|+++|+++|+++|||||++|+..+++++++.++++....+ +...|+|+||++||.|||+||
T Consensus         6 ~~~~~~~~~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~-~~~~d~h~vaslLK~fLReLP   84 (193)
T cd04382           6 LADFDPSTSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPN-LSKVDIHVICGCLKDFLRSLK   84 (193)
T ss_pred             ccccCCCCCCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcc-cccCCHHHHHHHHHHHHHhCC
Confidence            4555556677899999999999999999999999999999999999999998743334 556799999999999999999


Q ss_pred             CCCCChHHHHHHHHHhcc
Q psy8293         101 EVLLTNKSSETFMSIFQP  118 (124)
Q Consensus       101 ~PLl~~~~~~~~~~~~~~  118 (124)
                      +||+|.++|+.|+++++.
T Consensus        85 ePLi~~~~y~~~~~~~~~  102 (193)
T cd04382          85 EPLITFALWKEFMEAAEI  102 (193)
T ss_pred             CcCCCHHHHHHHHHHHHc
Confidence            999999999999988753

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway

>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

Probab=99.94  E-value=1.7e-26  Score=162.04  Aligned_cols=87  Identities=18%  Similarity=0.318  Sum_probs=79.9

Q ss_pred             CCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChHHH
Q psy8293          30 YALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSS  109 (124)
Q Consensus        30 ~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~  109 (124)
                      +.+|.+|.+|+++|+++|+++|||||++|+.+ +.++++.+|.+...++ ++..|+|+||++||.|||+||+||+|+++|
T Consensus        13 ~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d-~~~~dv~~va~~LK~ylReLPePLip~~~y   90 (200)
T cd04388          13 DVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVD-LEQFDVAALADALKRYLLDLPNPVIPAPVY   90 (200)
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCC-cccccHHHHHHHHHHHHHhCCCccCCHHHH
Confidence            56999999999999999999999999999875 6789999998766677 678899999999999999999999999999


Q ss_pred             HHHHHHhcc
Q psy8293         110 ETFMSIFQP  118 (124)
Q Consensus       110 ~~~~~~~~~  118 (124)
                      +.|++++++
T Consensus        91 ~~fi~~~~~   99 (200)
T cd04388          91 SEMISRAQE   99 (200)
T ss_pred             HHHHHHHHc
Confidence            999998754

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p

>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

Probab=99.94  E-value=5.3e-26  Score=158.19  Aligned_cols=99  Identities=23%  Similarity=0.370  Sum_probs=85.9

Q ss_pred             ccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHHHHHH
Q psy8293          18 GVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDE-VDSQQAYDVADLVKQYF   96 (124)
Q Consensus        18 G~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~-~~~~~~~~va~~lK~fl   96 (124)
                      |.+|+.... .+..||.+|..|++||+++|+++|||||++|+...++++++.++.+...... .+..|+|+||+++|.||
T Consensus         2 ~~~l~~~~~-~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yL   80 (184)
T cd04385           2 GPALEDQQL-TDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFL   80 (184)
T ss_pred             CccHHHhhh-CCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHH
Confidence            677775543 4577999999999999999999999999999999999999999876332221 45779999999999999


Q ss_pred             hhCCCCCCChHHHHHHHHHhc
Q psy8293          97 RELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        97 r~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      |+||+||+|.+.|+.|+++++
T Consensus        81 reLP~pLi~~~~~~~~~~~~~  101 (184)
T cd04385          81 RDLPDPLLTSELHAEWIEAAE  101 (184)
T ss_pred             HhCCCccCCHHHHHHHHHHHh
Confidence            999999999999999998874

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

Probab=99.94  E-value=5.6e-26  Score=160.52  Aligned_cols=88  Identities=27%  Similarity=0.471  Sum_probs=80.1

Q ss_pred             CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChHH
Q psy8293          29 GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKS  108 (124)
Q Consensus        29 ~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~  108 (124)
                      +..||.+|..|++||+++|+++|||||++|+..+++++++.+|.+ ..+++....|+|+||++||.|||+||+||+|.++
T Consensus         6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~-~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~   84 (206)
T cd04376           6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRG-IDVVLDENHSVHDVAALLKEFFRDMPDPLLPREL   84 (206)
T ss_pred             CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcC-CCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHH
Confidence            457999999999999999999999999999999999999999988 3444345679999999999999999999999999


Q ss_pred             HHHHHHHhc
Q psy8293         109 SETFMSIFQ  117 (124)
Q Consensus       109 ~~~~~~~~~  117 (124)
                      |+.|+++.+
T Consensus        85 y~~~i~~~~   93 (206)
T cd04376          85 YTAFIGTAL   93 (206)
T ss_pred             HHHHHHHHc
Confidence            999998765

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

Probab=99.92  E-value=1.5e-24  Score=153.45  Aligned_cols=92  Identities=35%  Similarity=0.521  Sum_probs=78.5

Q ss_pred             cccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHHHHH
Q psy8293          17 FGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDE-VDSQQAYDVADLVKQY   95 (124)
Q Consensus        17 FG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~-~~~~~~~~va~~lK~f   95 (124)
                      ||-+|.+    ++  ++ .|.+|++||++ |+++|||||++|+..++++|++.+|++ ..+++ ....++|+||++||.|
T Consensus         1 ~~~~~~~----~~--~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~-~~~~~~~~~~~~h~va~lLK~f   71 (208)
T cd04392           1 FGAPLTE----EG--IA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSG-TDLDLESGGFHAHDCATVLKGF   71 (208)
T ss_pred             CCCCccc----cc--cH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcC-CCCCcccccCCHHHHHHHHHHH
Confidence            6777762    22  33 77899999998 999999999999999999999999988 45552 2356899999999999


Q ss_pred             HhhCCCCCCChHHHHHHHHHhc
Q psy8293          96 FRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        96 lr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      ||+||+||+|.++|+.|+++.+
T Consensus        72 lReLPePLi~~~~y~~~~~i~~   93 (208)
T cd04392          72 LGELPEPLLTHAHYPAHLQIAD   93 (208)
T ss_pred             HHhCCCccCCHHHHHHHHHHHH
Confidence            9999999999999999987664

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

Probab=99.91  E-value=3.4e-24  Score=152.82  Aligned_cols=100  Identities=22%  Similarity=0.404  Sum_probs=89.0

Q ss_pred             CcccccchHHHHhhh----------------------CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHH----HHHHH
Q psy8293          14 NSVFGVPLLVNIQKT----------------------GYALPKFIISSFEWLINNASDQIGIFRKPGVKTR----IQKLR   67 (124)
Q Consensus        14 ~~vFG~~L~~~~~~~----------------------~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~----i~~l~   67 (124)
                      ..+||.+|+++....                      ...||.++.+|++||+++|+.+|||||++|+.+.    +++++
T Consensus        10 ~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~   89 (220)
T cd04380          10 PSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIR   89 (220)
T ss_pred             cccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHH
Confidence            579999999987632                      1249999999999999999999999999999999    99999


Q ss_pred             HHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHh
Q psy8293          68 EMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIF  116 (124)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~  116 (124)
                      +.+|++. ...  ...|+|++|++||.|||+||+||+|+++|+.|+++.
T Consensus        90 ~~ld~~~-~~~--~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~  135 (220)
T cd04380          90 DALDTGS-PFN--SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAV  135 (220)
T ss_pred             HHHhCCC-CCC--CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHh
Confidence            9999883 332  567999999999999999999999999999999884

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas

>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

Probab=99.90  E-value=1.7e-23  Score=147.57  Aligned_cols=87  Identities=24%  Similarity=0.376  Sum_probs=74.6

Q ss_pred             CcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHH-HhcC---CCCCCCCC-CCCHHHHHHHHHHHHhhCCCCCCCh
Q psy8293          32 LPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREM-ADEV---DFKLDEVD-SQQAYDVADLVKQYFRELPEVLLTN  106 (124)
Q Consensus        32 vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~-~~~~---~~~~~~~~-~~~~~~va~~lK~flr~Lp~PLl~~  106 (124)
                      -+.+|.+|++||+++|+++|||||++|+..+++++++. +|.+   ...+++.. ..|+|+||++||.|||+||+||+|+
T Consensus        28 ~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~~  107 (203)
T cd04374          28 GFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMTY  107 (203)
T ss_pred             cHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCCH
Confidence            35689999999999999999999999999999999875 5543   23455222 5799999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q psy8293         107 KSSETFMSIFQP  118 (124)
Q Consensus       107 ~~~~~~~~~~~~  118 (124)
                      ++|+.|+++++.
T Consensus       108 ~~y~~~i~~~~~  119 (203)
T cd04374         108 ELHNDFINAAKS  119 (203)
T ss_pred             HHHHHHHHHHhC
Confidence            999999998754

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4269|consensus

Probab=99.89  E-value=1.3e-23  Score=168.72  Aligned_cols=107  Identities=29%  Similarity=0.423  Sum_probs=91.1

Q ss_pred             CCCCCCccccc----chHHHHhhhCCCCcHHHHHHHHHHH-hcCCCccCeeecCCChHHHHHHHHHHhcC-CCCCC-CCC
Q psy8293           9 HFKNNNSVFGV----PLLVNIQKTGYALPKFIISSFEWLI-NNASDQIGIFRKPGVKTRIQKLREMADEV-DFKLD-EVD   81 (124)
Q Consensus         9 ~~~~~~~vFG~----~L~~~~~~~~~~vP~~l~~~~~~l~-~~gl~~eGifR~~g~~~~i~~l~~~~~~~-~~~~~-~~~   81 (124)
                      ..+. .+|||.    .+....++...++|.||.+|++||+ .+|+..|||||++|+...|+.|++.||.+ ++++. ..+
T Consensus       893 ~~~q-TgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~  971 (1112)
T KOG4269|consen  893 SVKQ-TGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDS  971 (1112)
T ss_pred             ccee-ceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhccc
Confidence            3345 799994    4444555666789999999999999 59999999999999999999999999987 45554 235


Q ss_pred             CCCHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHh
Q psy8293          82 SQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIF  116 (124)
Q Consensus        82 ~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~  116 (124)
                      +.|+|+|||+||+|||+||+||++.++|..|....
T Consensus       972 E~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i 1006 (1112)
T KOG4269|consen  972 EMDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGI 1006 (1112)
T ss_pred             cccHHHHHHHHHHHHHhCCccccchhhhHHHHhhc
Confidence            67999999999999999999999999999997654

>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases

Probab=99.88  E-value=7e-22  Score=135.78  Aligned_cols=87  Identities=32%  Similarity=0.504  Sum_probs=79.2

Q ss_pred             CCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCC-CCCCCCHHHHHHHHHHHHhhCCCCCCChHHH
Q psy8293          31 ALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLD-EVDSQQAYDVADLVKQYFRELPEVLLTNKSS  109 (124)
Q Consensus        31 ~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~-~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~  109 (124)
                      .||.++..|++||+++|+++|||||++|+..+++++++.++.+.. .+ .....|+|++|+++|.|||+||+||+|.+.|
T Consensus         2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~   80 (174)
T smart00324        2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPD-PDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELY   80 (174)
T ss_pred             CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCC-CCcccccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence            589999999999999999999999999999999999999998733 32 2567899999999999999999999999999


Q ss_pred             HHHHHHhcc
Q psy8293         110 ETFMSIFQP  118 (124)
Q Consensus       110 ~~~~~~~~~  118 (124)
                      +.|+++++.
T Consensus        81 ~~~~~~~~~   89 (174)
T smart00324       81 EEFIEAAKV   89 (174)
T ss_pred             HHHHHHHhC
Confidence            999988753

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.

>KOG2710|consensus

Probab=99.87  E-value=1.1e-21  Score=148.94  Aligned_cols=87  Identities=30%  Similarity=0.452  Sum_probs=80.6

Q ss_pred             CCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcC----CCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCCh
Q psy8293          31 ALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEV----DFKLDEVDSQQAYDVADLVKQYFRELPEVLLTN  106 (124)
Q Consensus        31 ~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~----~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~  106 (124)
                      .||.+|..|+.||.++|+.+.||||++|+..++++|++.||.+    .+..+ |+.+++|++|++||.|||+||+||||.
T Consensus        93 ~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~-~e~~nvHDvAaLLK~flr~lp~pLLP~  171 (412)
T KOG2710|consen   93 QIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVND-WEDFNVHDVAALLKEFLRDLPDPLLPL  171 (412)
T ss_pred             eCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccc-cccccHHHHHHHHHHHHHhCCcccCCH
Confidence            4999999999999999999999999999999999999999987    34444 889999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q psy8293         107 KSSETFMSIFQP  118 (124)
Q Consensus       107 ~~~~~~~~~~~~  118 (124)
                      ++|+.|+..+..
T Consensus       172 ~LY~~f~~p~kl  183 (412)
T KOG2710|consen  172 ELYESFINPAKL  183 (412)
T ss_pred             HHHHHHhhhhcC
Confidence            999999987753

>KOG1450|consensus

Probab=99.86  E-value=1.3e-21  Score=154.43  Aligned_cols=111  Identities=29%  Similarity=0.397  Sum_probs=97.9

Q ss_pred             CCCCCCCCcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCC--CC
Q psy8293           7 FHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDS--QQ   84 (124)
Q Consensus         7 ~~~~~~~~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~--~~   84 (124)
                      .++.+....+||++|+.+|++.+..||.+|..|++.|+.+|++++||||++|+...|++|+..+|.+ ..+++...  .|
T Consensus       447 ~~g~~k~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~~d~d-~~l~l~~~~~~d  525 (650)
T KOG1450|consen  447 EPGKPKFDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQSDQD-NSLDLADDRWDD  525 (650)
T ss_pred             ccCccccCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHhcCcc-ccccccccchhH
Confidence            3333334799999999999999999999999999999999999999999999999999999999965 33442333  58


Q ss_pred             HHHHHHHHHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          85 AYDVADLVKQYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        85 ~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      +|.|+++||.||||||+||++..++..|..+.+.
T Consensus       526 ihai~galK~ffreLpdpL~p~~l~~~f~~a~~~  559 (650)
T KOG1450|consen  526 IHAITGALKTFFRELPDPLFPKALSKDFTVALQG  559 (650)
T ss_pred             HHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcc
Confidence            9999999999999999999999999999988764

>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation

Probab=99.86  E-value=2.7e-21  Score=129.88  Aligned_cols=86  Identities=28%  Similarity=0.543  Sum_probs=75.6

Q ss_pred             cHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChHHHHHH
Q psy8293          33 PKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETF  112 (124)
Q Consensus        33 P~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~  112 (124)
                      |.+|..|++||+++|+.++||||++|+.++++++++.++.+......++..|+|++|+++|.||++||+||++.+.|+.|
T Consensus         1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~   80 (151)
T PF00620_consen    1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF   80 (151)
T ss_dssp             EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence            88999999999999999999999999999999999999988433212678899999999999999999999999999999


Q ss_pred             HHHhcc
Q psy8293         113 MSIFQP  118 (124)
Q Consensus       113 ~~~~~~  118 (124)
                      +++.+.
T Consensus        81 ~~~~~~   86 (151)
T PF00620_consen   81 IAASKS   86 (151)
T ss_dssp             HHHHTS
T ss_pred             hhhhcc
Confidence            976543

Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....

>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

Probab=99.85  E-value=1e-20  Score=128.79  Aligned_cols=85  Identities=32%  Similarity=0.492  Sum_probs=77.5

Q ss_pred             cHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChHHHHHH
Q psy8293          33 PKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETF  112 (124)
Q Consensus        33 P~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~  112 (124)
                      |.++..|++||+++|+.++||||++|+..+++++++.++.+....+ ....|+|++|+++|.|||+||+||+|.+.|+.+
T Consensus         1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~-~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~   79 (169)
T cd00159           1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDD-LEDYDVHDVASLLKLYLRELPEPLIPFELYDEF   79 (169)
T ss_pred             ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCcc-ccccCHHHHHHHHHHHHHcCCCccCCHHHHHHH
Confidence            8899999999999999999999999999999999999998843223 567899999999999999999999999999999


Q ss_pred             HHHhcc
Q psy8293         113 MSIFQP  118 (124)
Q Consensus       113 ~~~~~~  118 (124)
                      +++++.
T Consensus        80 ~~~~~~   85 (169)
T cd00159          80 IELAKI   85 (169)
T ss_pred             HHHHHc
Confidence            998753

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.

>KOG4407|consensus

Probab=99.82  E-value=2e-20  Score=154.66  Aligned_cols=106  Identities=27%  Similarity=0.401  Sum_probs=89.3

Q ss_pred             CcccccchHHHHhh-hCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCC--CCCCCC-CC-CHHHH
Q psy8293          14 NSVFGVPLLVNIQK-TGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDF--KLDEVD-SQ-QAYDV   88 (124)
Q Consensus        14 ~~vFG~~L~~~~~~-~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~--~~~~~~-~~-~~~~v   88 (124)
                      .++|||+|.++... .+.-||.+|+.|+..+|.+||++.||||++||.+.|.+|++.+|++.-  .++..+ .+ |+++|
T Consensus      1155 ~~~~GVrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVV 1234 (1973)
T KOG4407|consen 1155 QPVLGVRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVV 1234 (1973)
T ss_pred             CcccccccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHH
Confidence            45999999976443 244599999999999999999999999999999999999999998722  222122 22 89999


Q ss_pred             HHHHHHHHhhCCCCCCChHHHHHHHHHhccc
Q psy8293          89 ADLVKQYFRELPEVLLTNKSSETFMSIFQPI  119 (124)
Q Consensus        89 a~~lK~flr~Lp~PLl~~~~~~~~~~~~~~~  119 (124)
                      .++||.|||.|||||+|.++|..|+++=...
T Consensus      1235 SSLLK~F~RkLPepL~t~~~Y~~FIeAnrk~ 1265 (1973)
T KOG4407|consen 1235 SSLLKMFLRKLPEPLLTDKLYPFFIEANRKS 1265 (1973)
T ss_pred             HHHHHHHHHhCCcccccccchhhhhhhcccc
Confidence            9999999999999999999999999986543

>KOG4270|consensus

Probab=99.79  E-value=2e-19  Score=141.46  Aligned_cols=102  Identities=26%  Similarity=0.359  Sum_probs=85.8

Q ss_pred             CcccccchHHHHhhh---CCCCcHHHHHHHH-HHH-hcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHH
Q psy8293          14 NSVFGVPLLVNIQKT---GYALPKFIISSFE-WLI-NNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDV   88 (124)
Q Consensus        14 ~~vFG~~L~~~~~~~---~~~vP~~l~~~~~-~l~-~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~v   88 (124)
                      ..+|||+++.+....   +.-||.++..+.+ .++ +.|+..|||||++|....++.+|+.+|.+. ..+.. ..|+|++
T Consensus       144 ~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~-v~~~~-~iDvH~~  221 (577)
T KOG4270|consen  144 ETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGV-VPDQL-YIDVHCL  221 (577)
T ss_pred             hhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCc-ccccc-cCCHHHH
Confidence            589999988765432   2337999988888 665 479999999999999999999999999983 33313 6799999


Q ss_pred             HHHHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          89 ADLVKQYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        89 a~~lK~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      |++||.||||||+|++++++|+.|+.+++
T Consensus       222 agllKayLRELPepvl~~nL~~e~~qv~~  250 (577)
T KOG4270|consen  222 AGLLKAYLRELPEPVLTFNLYKEWTQVQN  250 (577)
T ss_pred             HHHHHHHHHhCCCcCCCcccCHHHHHHHh
Confidence            99999999999999999999999997664

>KOG4406|consensus

Probab=99.78  E-value=2.7e-19  Score=134.87  Aligned_cols=102  Identities=27%  Similarity=0.447  Sum_probs=92.5

Q ss_pred             CCcccccchHHHHhhh--CCCCcHHHHHHHHHHHhcC-CCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCC-CHHHH
Q psy8293          13 NNSVFGVPLLVNIQKT--GYALPKFIISSFEWLINNA-SDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQ-QAYDV   88 (124)
Q Consensus        13 ~~~vFG~~L~~~~~~~--~~~vP~~l~~~~~~l~~~g-l~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~-~~~~v   88 (124)
                      .++-||++|+-+.+..  +..+|.+|..|+++|..+| +.+||+||.|+|...+.++++.+|+| ..++ ++.+ ++|..
T Consensus       250 ~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G-~pVd-le~~~~~h~~  327 (467)
T KOG4406|consen  250 PTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTG-EPVD-LEVYKDLHAP  327 (467)
T ss_pred             chhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCC-Cccc-HHHhccchhh
Confidence            4789999999888776  6789999999999999999 99999999999999999999999999 7888 6555 59999


Q ss_pred             HHHHHHHHhhCCCCCCChHHHHHHHHHh
Q psy8293          89 ADLVKQYFRELPEVLLTNKSSETFMSIF  116 (124)
Q Consensus        89 a~~lK~flr~Lp~PLl~~~~~~~~~~~~  116 (124)
                      |.++|.|||+||+||++.++|+......
T Consensus       328 avllKtF~R~LpePL~t~~~y~~lt~~~  355 (467)
T KOG4406|consen  328 AVLLKTFLRSLPEPLLTFRLYESLTGFS  355 (467)
T ss_pred             HHHHHHHHhcCCcccchhhhhhhhhccc
Confidence            9999999999999999999998876543

>KOG1453|consensus

Probab=99.78  E-value=7e-19  Score=145.94  Aligned_cols=103  Identities=20%  Similarity=0.319  Sum_probs=96.0

Q ss_pred             cccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHH
Q psy8293          15 SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQ   94 (124)
Q Consensus        15 ~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~   94 (124)
                      ..||+.|...+..+...||.++..|+.+|+.+|+.+|||||++|...+++.|.+.++.+...+. +...|+|++++++|.
T Consensus       601 ~~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~-l~~~dih~vtsVlK~  679 (918)
T KOG1453|consen  601 PLFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVL-LSTPDIHAVTSVLKL  679 (918)
T ss_pred             ccccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCcccee-cCCCChHHHHHHHHH
Confidence            4899999999998888999999999999999999999999999999999999999998854455 778899999999999


Q ss_pred             HHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          95 YFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        95 flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      |||+||+||+++.+|+.|+.+.+.
T Consensus       680 yLr~Lp~pIi~f~~y~~~~~~~~~  703 (918)
T KOG1453|consen  680 YLRKLPEPIIIFNLYDEFLSAAKL  703 (918)
T ss_pred             HHHhccccccccchHHHHHhhhcc
Confidence            999999999999999999998764

>KOG3564|consensus

Probab=99.77  E-value=2.1e-18  Score=131.80  Aligned_cols=97  Identities=15%  Similarity=0.240  Sum_probs=86.0

Q ss_pred             hHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCC
Q psy8293          21 LLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELP  100 (124)
Q Consensus        21 L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp  100 (124)
                      |.+.+......||.+|..|+..||++||.+|||||++|....+++|++.+-++.. .......|+|++|+++|.|||+|.
T Consensus       351 L~DF~~s~aPMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt-~p~~g~~Dihvic~~lKdFLR~Lk  429 (604)
T KOG3564|consen  351 LADFAPSTAPMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKT-TPHLGNDDIHVICCCLKDFLRNLK  429 (604)
T ss_pred             hhhhcccccccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCC-CCccCCcchhHHHHHHHHHHHhcc
Confidence            4455555556799999999999999999999999999999999999999988844 433677899999999999999999


Q ss_pred             CCCCChHHHHHHHHHhcc
Q psy8293         101 EVLLTNKSSETFMSIFQP  118 (124)
Q Consensus       101 ~PLl~~~~~~~~~~~~~~  118 (124)
                      +||||..+..+|+.|++.
T Consensus       430 ePLip~~~~rdf~eAa~~  447 (604)
T KOG3564|consen  430 EPLIPFRLRRDFMEAAEI  447 (604)
T ss_pred             cccccchHHHHHHHHhcC
Confidence            999999999999999864

>KOG1452|consensus

Probab=99.71  E-value=1.8e-17  Score=121.68  Aligned_cols=111  Identities=19%  Similarity=0.205  Sum_probs=95.2

Q ss_pred             CCCCCCCCCCCCcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC--
Q psy8293           3 KKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV--   80 (124)
Q Consensus         3 ~~~k~~~~~~~~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~--   80 (124)
                      ||+-.|.-   ..+||.+|+.+++++...-|.++..|++.||++|++..|+|++.|+.++-+.||..|+.+...+.+-  
T Consensus       174 rR~~~Prl---rgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E  250 (442)
T KOG1452|consen  174 RRTVNPRL---RGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAE  250 (442)
T ss_pred             hcccCccc---ccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccc
Confidence            44444544   4699999999999998889999999999999999999999999999999999999999775555522  


Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHh
Q psy8293          81 DSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIF  116 (124)
Q Consensus        81 ~~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~  116 (124)
                      ...|.+.|++++|.|+||||||++|...++.-.+|+
T Consensus       251 ~iPD~nvItg~~kD~lrElpEPl~t~~~f~m~~dA~  286 (442)
T KOG1452|consen  251 SIPDYNVITGDSKDELRELPEPLVTGQDFEMDFDAA  286 (442)
T ss_pred             cCCCcceeecccHhHHHhCCCccccchhhhhhhhhh
Confidence            123788999999999999999999998888777765

>KOG1117|consensus

Probab=99.60  E-value=3.3e-15  Score=120.68  Aligned_cols=90  Identities=21%  Similarity=0.316  Sum_probs=81.1

Q ss_pred             CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC-CCCCHHHHHHHHHHHHhhCCCCCCChH
Q psy8293          29 GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV-DSQQAYDVADLVKQYFRELPEVLLTNK  107 (124)
Q Consensus        29 ~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~-~~~~~~~va~~lK~flr~Lp~PLl~~~  107 (124)
                      +..||.+|..|+.|+.++||..|||||.+|...+++.|-+.|-++...+.+- .+..+.+|+++||.|||+|++||+|.+
T Consensus       724 ~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft~~  803 (1186)
T KOG1117|consen  724 KNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFTKE  803 (1186)
T ss_pred             CCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccchh
Confidence            5679999999999999999999999999999999999999998876655522 345799999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q psy8293         108 SSETFMSIFQP  118 (124)
Q Consensus       108 ~~~~~~~~~~~  118 (124)
                      +|..|+++++.
T Consensus       804 ~~~~w~eaae~  814 (1186)
T KOG1117|consen  804 LYPYWIEAAET  814 (1186)
T ss_pred             hhhhHHHhhhc
Confidence            99999999863

>KOG4271|consensus

Probab=99.53  E-value=3.7e-15  Score=121.01  Aligned_cols=102  Identities=21%  Similarity=0.310  Sum_probs=89.3

Q ss_pred             CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHH
Q psy8293          14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDE-VDSQQAYDVADLV   92 (124)
Q Consensus        14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~-~~~~~~~~va~~l   92 (124)
                      ...||+++..++.. ..++|..+++|++||+..|+.+||+||++|+.....+++..|.++ ..+++ ..+..+|+||+.+
T Consensus       915 s~~~~~~l~~~~t~-~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~-~~~dl~s~d~~v~~vagAl  992 (1100)
T KOG4271|consen  915 SNYFLTPLQDAVTS-EKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLND-HNFDLSSMDTTVNVVAGAL  992 (1100)
T ss_pred             hhccCCcccccccC-CcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhh-ccccccccccccccccCcc
Confidence            46899999976654 567999999999999999999999999999999999999999875 44552 1244699999999


Q ss_pred             HHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          93 KQYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        93 K~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      |.||..||+||+|+++++.+.++++
T Consensus       993 ksffa~Lpeplipys~h~~~~e~~k 1017 (1100)
T KOG4271|consen  993 KSFFACLPEPLIPYSYHPRLKEAMK 1017 (1100)
T ss_pred             hhhhhhCCCcccCccCCcchhhhhh
Confidence            9999999999999999999999887

>KOG1451|consensus

Probab=99.52  E-value=2.6e-14  Score=111.91  Aligned_cols=87  Identities=24%  Similarity=0.445  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHH-h-cCCCC--CCCCCCCCHHHHHHHHHHHHhhCCCCCCChHHH
Q psy8293          34 KFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMA-D-EVDFK--LDEVDSQQAYDVADLVKQYFRELPEVLLTNKSS  109 (124)
Q Consensus        34 ~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~-~-~~~~~--~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~  109 (124)
                      .+|.+|++.|+..|++++|+||..|...+++.|...+ | +.+.+  .+.++++++-+|+|.||.|||.||+||++++++
T Consensus       390 ~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LH  469 (812)
T KOG1451|consen  390 EFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELH  469 (812)
T ss_pred             HHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHH
Confidence            6899999999999999999999999999999987664 3 11122  232367899999999999999999999999999


Q ss_pred             HHHHHHhcccc
Q psy8293         110 ETFMSIFQPIY  120 (124)
Q Consensus       110 ~~~~~~~~~~~  120 (124)
                      ..|+.|++..+
T Consensus       470 k~FI~AAKsdn  480 (812)
T KOG1451|consen  470 KVFINAAKSDN  480 (812)
T ss_pred             HHHHHHHhccc
Confidence            99999996443

>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins

Probab=99.18  E-value=1.4e-10  Score=81.37  Aligned_cols=85  Identities=15%  Similarity=0.113  Sum_probs=70.9

Q ss_pred             cHHHHHHHHHHHhcCCCccCe---eecCCChHHHHHH-HHHHhcCCCCCCC-------CCCCCHHHHHHHHHHHHhhCCC
Q psy8293          33 PKFIISSFEWLINNASDQIGI---FRKPGVKTRIQKL-REMADEVDFKLDE-------VDSQQAYDVADLVKQYFRELPE  101 (124)
Q Consensus        33 P~~l~~~~~~l~~~gl~~eGi---fR~~g~~~~i~~l-~~~~~~~~~~~~~-------~~~~~~~~va~~lK~flr~Lp~  101 (124)
                      =.++..|.+.|+.+|+++++|   ||.+++...++.+ ++.|+.+......       ....|+|+++++||.+++.||+
T Consensus         7 ~~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~   86 (198)
T cd04401           7 KGLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPG   86 (198)
T ss_pred             HHHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCC
Confidence            468899999999999999999   8999999999888 5666655333320       2346999999999999999999


Q ss_pred             CCCCh-HHHHHHHHHhc
Q psy8293         102 VLLTN-KSSETFMSIFQ  117 (124)
Q Consensus       102 PLl~~-~~~~~~~~~~~  117 (124)
                      +++++ +.|..|...-+
T Consensus        87 ~~v~~~~~Y~~F~~~E~  103 (198)
T cd04401          87 SKVIWWEVYEEFKARER  103 (198)
T ss_pred             CccCCHHHHHHHHHHHH
Confidence            99999 99999998643

Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins

Probab=99.15  E-value=1.1e-10  Score=83.10  Aligned_cols=104  Identities=20%  Similarity=0.265  Sum_probs=81.3

Q ss_pred             cccccchHHHHhhhCCCCcHHHHHHH--HHHHhcCCCc--cCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCC-H----
Q psy8293          15 SVFGVPLLVNIQKTGYALPKFIISSF--EWLINNASDQ--IGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQ-A----   85 (124)
Q Consensus        15 ~vFG~~L~~~~~~~~~~vP~~l~~~~--~~l~~~gl~~--eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~-~----   85 (124)
                      ++||+|+-+-+.+.+...|..+..-.  +++..+.++.  .|+|+.++...++...++.++..++.+..-.... .    
T Consensus        20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~   99 (235)
T cd04405          20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD   99 (235)
T ss_pred             HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence            58999988777777888888887666  5555555554  7999999999999999999987654422111122 2    


Q ss_pred             ------HHHHHHHHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          86 ------YDVADLVKQYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        86 ------~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                            -+||++++.||++|||||+|..+|+.|..+++-
T Consensus       100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~l  138 (235)
T cd04405         100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILEL  138 (235)
T ss_pred             cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHH
Confidence                  279999999999999999999999999998873

This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4724|consensus

Probab=99.15  E-value=1.6e-11  Score=97.39  Aligned_cols=101  Identities=19%  Similarity=0.225  Sum_probs=93.0

Q ss_pred             CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH
Q psy8293          14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVK   93 (124)
Q Consensus        14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK   93 (124)
                      ..+||.||...|.+..  +|.-++.+.-++-..|-.++||||...+...++++++.+|.| .++. ++...+++.|+++|
T Consensus        80 ~~Lfg~pl~nic~~~~--lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsg-v~v~-l~~~~i~v~a~v~k  155 (741)
T KOG4724|consen   80 SFLFGWPLTNICVHFR--LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSG-VDVG-LKSGEIVVDAAVDK  155 (741)
T ss_pred             ccccCccchhhcccCC--CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhccc-cccc-ccccceEEeehhhh
Confidence            7899999999998866  899999999999999999999999999999999999999998 5666 77889999999999


Q ss_pred             HHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          94 QYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        94 ~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      .|+|.+|.-++..++|+.|..+..+
T Consensus       156 dflr~ip~~~lSsdl~~hw~~~~~~  180 (741)
T KOG4724|consen  156 DFLRTIPQLTLSSDLNSHWQLQGPE  180 (741)
T ss_pred             chhhhchhhhhccccHHHHhhcccc
Confidence            9999999999999999999877654

>KOG3565|consensus

Probab=98.36  E-value=3.4e-07  Score=74.13  Aligned_cols=88  Identities=16%  Similarity=0.146  Sum_probs=74.7

Q ss_pred             CCCCcHHHHHHHHHHHhcCCCccCeee-cCCChHHHHHHHHHHhcCCCCCC-CCCCCCHHHHHHHHHHHHhhCCCC-CCC
Q psy8293          29 GYALPKFIISSFEWLINNASDQIGIFR-KPGVKTRIQKLREMADEVDFKLD-EVDSQQAYDVADLVKQYFRELPEV-LLT  105 (124)
Q Consensus        29 ~~~vP~~l~~~~~~l~~~gl~~eGifR-~~g~~~~i~~l~~~~~~~~~~~~-~~~~~~~~~va~~lK~flr~Lp~P-Ll~  105 (124)
                      +..+|.++..|+.+++.+|+..+|||| ++|....+..++.++..+ ..+. ...+.+... |.++|.|++.+.+| .++
T Consensus       215 ~q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g-~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~  292 (640)
T KOG3565|consen  215 FQFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERG-MRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFP  292 (640)
T ss_pred             cccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-hHhhhhccCcchhH-HHHHHHHHccCCCcccCc
Confidence            346999999999999999999999999 999999999999999877 3332 133445555 99999999999999 999


Q ss_pred             hHHHHHHHHHhcc
Q psy8293         106 NKSSETFMSIFQP  118 (124)
Q Consensus       106 ~~~~~~~~~~~~~  118 (124)
                      ++.+..+.++...
T Consensus       293 ~e~~~~~~~~~~~  305 (640)
T KOG3565|consen  293 FEDFGQPHDCAAR  305 (640)
T ss_pred             cccccchhhhhhh
Confidence            9999998877653

>KOG4370|consensus

Probab=98.30  E-value=1.3e-06  Score=66.97  Aligned_cols=105  Identities=28%  Similarity=0.401  Sum_probs=76.7

Q ss_pred             CcccccchHHHHhh----hCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcC----------------
Q psy8293          14 NSVFGVPLLVNIQK----TGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEV----------------   73 (124)
Q Consensus        14 ~~vFG~~L~~~~~~----~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~----------------   73 (124)
                      .++-|.++..-+..    ++.+.|..+....++.+.+|+-++|++|.+....+.++++.+-+.+                
T Consensus        49 ~~~~~l~~~~~v~~d~e~d~~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k  128 (514)
T KOG4370|consen   49 KRVLGLPLTESVSADPELDGIPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIK  128 (514)
T ss_pred             ChhhcCCCCcccccCcccCCCcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHH
Confidence            34455554433222    2456899999999999999999999999999887766665443321                


Q ss_pred             ------C-----------------CCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          74 ------D-----------------FKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        74 ------~-----------------~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                            +                 .......++++.+|||++|.|+|+||++++|.++...|..++.+
T Consensus       129 ~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h  196 (514)
T KOG4370|consen  129 RFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLH  196 (514)
T ss_pred             HhhhccCCccccccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHcc
Confidence                  0                 00001235578999999999999999999999999999988753

>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation []

Probab=97.73  E-value=0.00016  Score=56.19  Aligned_cols=84  Identities=17%  Similarity=0.165  Sum_probs=65.4

Q ss_pred             CcHHHHHHHHHHHhcCCCccCee---ecCCChHHHHHHHH-HHhcCCCC--CC------CCCCCCHHHHHHHHHHHHhhC
Q psy8293          32 LPKFIISSFEWLINNASDQIGIF---RKPGVKTRIQKLRE-MADEVDFK--LD------EVDSQQAYDVADLVKQYFREL   99 (124)
Q Consensus        32 vP~~l~~~~~~l~~~gl~~eGif---R~~g~~~~i~~l~~-~~~~~~~~--~~------~~~~~~~~~va~~lK~flr~L   99 (124)
                      |=.+|..|.+.|..+|+++++||   |-.-+...++.+.. .|..+...  .+      .....++|+++++||-.+..|
T Consensus         8 v~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RL   87 (420)
T PF08101_consen    8 VKDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRL   87 (420)
T ss_pred             HHHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence            45789999999999999999998   66667777766654 44444221  11      123568999999999999999


Q ss_pred             CCCCCChHHHHHHHHH
Q psy8293         100 PEVLLTNKSSETFMSI  115 (124)
Q Consensus       100 p~PLl~~~~~~~~~~~  115 (124)
                      |..+++++.|..|...
T Consensus        88 p~gvVgW~~Y~~Fk~~  103 (420)
T PF08101_consen   88 PGGVVGWDSYEEFKRR  103 (420)
T ss_pred             CCCccccHHHHHHHHH
Confidence            9999999999999754

>KOG4724|consensus

Probab=97.71  E-value=6.7e-05  Score=60.50  Aligned_cols=101  Identities=17%  Similarity=0.172  Sum_probs=73.9

Q ss_pred             CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHH----HHhcCCCCCCCCCCCCHHHHH
Q psy8293          14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLRE----MADEVDFKLDEVDSQQAYDVA   89 (124)
Q Consensus        14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~----~~~~~~~~~~~~~~~~~~~va   89 (124)
                      ...||+||+..+...+ ..|.-+.....-+...+.+++++||..-..+-+.+-..    .++.....++ .+...+|+++
T Consensus       414 kv~fdaPlS~~c~d~g-k~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vd-v~sspv~taa  491 (741)
T KOG4724|consen  414 KVPFDAPLSVFCADQG-KTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVD-VPSSPVHTAA  491 (741)
T ss_pred             hCcCCCchhhcccccC-CCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCccc-CCCCCchHHH
Confidence            5789999998888754 35665555666677788999999988554444432222    2223234555 5566899999


Q ss_pred             HHHHHHHhhCCCCCCChHHHHHHHHHh
Q psy8293          90 DLVKQYFRELPEVLLTNKSSETFMSIF  116 (124)
Q Consensus        90 ~~lK~flr~Lp~PLl~~~~~~~~~~~~  116 (124)
                      +++|.|+|++|..++..+.+.++.+|-
T Consensus       492 sv~KdfnRKtpRgi~sr~ihke~~ea~  518 (741)
T KOG4724|consen  492 SVHKDFNRKTPRGIPSREIHKESMEAT  518 (741)
T ss_pred             HHHHHhhhhcCCCccchHHHHHhhhhh
Confidence            999999999999999999998887764

>KOG1453|consensus

Probab=86.81  E-value=0.13  Score=44.13  Aligned_cols=99  Identities=20%  Similarity=0.235  Sum_probs=73.8

Q ss_pred             ccccchHHH-H-hhhCCCCcHHHHH-HHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCC-CCCCC-CC---CCCHHH
Q psy8293          16 VFGVPLLVN-I-QKTGYALPKFIIS-SFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD-FKLDE-VD---SQQAYD   87 (124)
Q Consensus        16 vFG~~L~~~-~-~~~~~~vP~~l~~-~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~-~~~~~-~~---~~~~~~   87 (124)
                      ++|+++..+ . .......|.++.. |.......|....++||.+|+...+...+..++... ...+. ..   ..++..
T Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~  541 (918)
T KOG1453|consen  462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL  541 (918)
T ss_pred             ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence            788877765 2 3334456888877 777777789999999999999999999999888553 22221 11   224555


Q ss_pred             HHHHHHHHHhhC--CCCCCChHHHHHHHH
Q psy8293          88 VADLVKQYFREL--PEVLLTNKSSETFMS  114 (124)
Q Consensus        88 va~~lK~flr~L--p~PLl~~~~~~~~~~  114 (124)
                      .++.++.++|.+  |.+...++.|..|.+
T Consensus       542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~  570 (918)
T KOG1453|consen  542 HSGALKHYLRSLRKPAPCRTCETYSWFME  570 (918)
T ss_pred             ccCcchhhhhcccCCcccccccccchhhh
Confidence            677999999999  999888888888874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	124
3kuq_A	228	Crystal Structure Of The Dlc1 Rhogap Domain Length		1e-28
3iug_A	229	Crystal Structure Of The Rhogap Domain Of Rics Leng		7e-07
3eap_A	271	Crystal Structure Of The Rhogap Domain Of Arhgap11a		2e-06
3byi_A	214	Crystal Structure Of Human Rho Gtpase Activating Pr		1e-04

>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain Length = 228

Iteration: 1
 Score =  121 bits (304), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 76/103 (73%), Gaps = 1/103 (0%)
Query: 15  SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD 74
           SVFGVPL VN+Q+TG  LP+ I  +  +L N+  DQ+G+FRK GVK+RIQ LR+M +E  
Sbjct: 19  SVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQM-NEGA 77
Query: 75  FKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
                 + Q AYDVAD++KQYFR+LPE L+TNK SETF+ I+Q
Sbjct: 78  IDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 120

>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics Length = 229

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 16  VFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMAD--EV 73
           VFG  L  ++  +G+ +P+ ++ S    I       GI+R  GV + IQ+LR   D   V
Sbjct: 21  VFGCDLGEHLLNSGFEVPQ-VLQSCTAFIERYGIVDGIYRLSGVASNIQRLRHEFDSEHV 79
Query: 74  DFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETF 112
                E   Q  + V  L K YFRELP  LLT +  E F
Sbjct: 80  PDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKF 118

>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a Length = 271

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 16  VFGVPLLV----NIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMAD 71
           +FGVP        + + G+ +P F++ +   L ++   + G+FRK G   R++ L+   +
Sbjct: 64  IFGVPFNALPHSAVPEYGH-IPSFLVDACTSLEDHIHTE-GLFRKSGSVIRLKALK---N 118
Query: 72  EVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
           +VD     + S    D+A L+KQ+FRELPE +L     E  +   Q
Sbjct: 119 KVDHGEGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQ 164

>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein 15 (arhgap15) Length = 214

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 16  VFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMAD-EVD 74
           +FG  L    ++    +P F+    E +     D  GI+R  G    IQKLR + + E  
Sbjct: 19  IFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEK 78
Query: 75  FKLDEVDSQQAYDVADLVKQYFRELPEVL 103
             LD+   +  + V   +K +FRELPE L
Sbjct: 79  LNLDDSQWEDIHVVTGALKMFFRELPEPL 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	8e-33
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	3e-21
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	5e-19
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	5e-19
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	1e-18
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	4e-18
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	1e-17
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	3e-17
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	6e-17
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	1e-16
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	3e-16
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	7e-16
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	1e-13
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	2e-13
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	3e-13
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	1e-09

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228

 Score =  113 bits (285), Expect = 8e-33
 Identities = 57/105 (54%), Positives = 75/105 (71%), Gaps = 1/105 (0%)

Query: 13  NNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADE 72
             SVFGVPL VN+Q+TG  LP+ I  +  +L N+  DQ+G+FRK GVK+RIQ LR+M + 
Sbjct: 17  QGSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEG 76

Query: 73  VDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
                   + Q AYDVAD++KQYFR+LPE L+TNK SETF+ I+Q
Sbjct: 77  -AIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 120

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271

 Score = 84.4 bits (209), Expect = 3e-21
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 13  NNSVFGVPLLVNIQKTGY---ALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREM 69
              +FGVP              +P F++ +    + +     G+FRK G   R++ L+  
Sbjct: 61  GGKIFGVPFNALPHSAVPEYGHIPSFLVDACTS-LEDHIHTEGLFRKSGSVIRLKALKNK 119

Query: 70  ADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
            D  +  L         D+A L+KQ+FRELPE +L     E  +   Q
Sbjct: 120 VDHGEGCLSSAP---PCDIAGLLKQFFRELPEPILPADLHEALLKAQQ 164

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202

 Score = 77.3 bits (191), Expect = 5e-19
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 4/107 (3%)

Query: 11  KNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMA 70
           K+   V+   L   ++      P  +      + +   +  G++R  G    I+ ++   
Sbjct: 3   KHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAF 62

Query: 71  DEVDFKLDEVDSQQAYD---VADLVKQYFRELPEVLLTNKSSETFMS 114
           D  D +  ++      D   +   +K YFR+LP  L+T  +   F+ 
Sbjct: 63  DR-DGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 108

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214

 Score = 77.7 bits (192), Expect = 5e-19
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 1/114 (0%)

Query: 2   TKKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKT 61
           + KT        + +FG  L    ++    +P F+    E +     D  GI+R  G   
Sbjct: 5   SLKTLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLA 64

Query: 62  RIQKLREMAD-EVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMS 114
            IQKLR + + E    LD+   +  + V   +K +FRELPE L      E F+ 
Sbjct: 65  TIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVE 118

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198

 Score = 76.1 bits (188), Expect = 1e-18
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 14  NSVFGVPL--LVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMAD 71
           N  FGV L  L         +P  +  +  +L  +A    GIFR+      ++++++  +
Sbjct: 6   NQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 65

Query: 72  EVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
                +D       +  A ++K + RELPE LLT       +    
Sbjct: 66  M-GLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLN 110

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201

 Score = 75.0 bits (185), Expect = 4e-18
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 6/108 (5%)

Query: 11  KNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMA 70
                +FG+ L    +     LPK ++    +L        GIFR+       ++L+E  
Sbjct: 7   PMPGQLFGISLPNICENDN--LPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKL 64

Query: 71  D-EVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
           +  V+  LD       + +A ++K + R +P  + ++   + ++S+  
Sbjct: 65  NSGVEVHLDCES---IFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMD 109

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242

 Score = 74.7 bits (184), Expect = 1e-17
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 3/106 (2%)

Query: 14  NSVFGVPL--LVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMAD 71
           N  FGV L  L         +P  +  +  +L  +A    GIFR+      ++++++  +
Sbjct: 42  NQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 101

Query: 72  EVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
                +D     + +  A ++K + RELPE LLT       +    
Sbjct: 102 M-GLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLN 146

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score = 74.9 bits (184), Expect = 3e-17
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 4/107 (3%)

Query: 11  KNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMA 70
           K+   V+   L   ++      P  +      + +   +  G++R  G    I+ ++   
Sbjct: 264 KHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAF 323

Query: 71  DEVDFKLDEVDSQQAYD---VADLVKQYFRELPEVLLTNKSSETFMS 114
           D  D +  ++      D   +   +K YFR+LP  L+T  +   F+ 
Sbjct: 324 DR-DGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 369

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229

 Score = 72.4 bits (178), Expect = 6e-17
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 15  SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREM--ADE 72
            VFG  L  ++  +G+ +P+ + S   ++        GI+R  GV + IQ+LR    ++ 
Sbjct: 20  RVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIVD-GIYRLSGVASNIQRLRHEFDSEH 78

Query: 73  VDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMS 114
           V     E   Q  + V  L K YFRELP  LLT +  E F  
Sbjct: 79  VPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSD 120

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209

 Score = 71.5 bits (176), Expect = 1e-16
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 13  NNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMAD- 71
            ++ FG+PL  ++      +P F+    E++ +      G++R  G KT    +++  D 
Sbjct: 9   ESNYFGMPL-QDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQ 67

Query: 72  --EVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMS 114
              ++    EV       VA  +K +F +LP+ L+        + 
Sbjct: 68  DHNINLVSMEVTV---NAVAGALKAFFADLPDPLIPYSLHPELLE 109

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246

 Score = 70.9 bits (174), Expect = 3e-16
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 7/117 (5%)

Query: 2   TKKTKFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKT 61
             +         ++ FGVPL   +      +P FI    E++        GI+R  G K+
Sbjct: 39  KPRPSITKATWESNYFGVPL-TTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKS 97

Query: 62  RIQKLREMADE---VDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSI 115
            ++ L+   D+   +D    +        VA  +K +F ELP+ L+        +  
Sbjct: 98  EMESLQRQFDQDHNLDLAEKDFT---VNTVAGAMKSFFSELPDPLVPYNMQIDLVEA 151

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231

 Score = 69.6 bits (171), Expect = 7e-16
 Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 16  VFGVPLLVNIQKTGYAL---PKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADE 72
           V+        + T          I      +     ++ G++R  GV +R+QKL  +  +
Sbjct: 18  VYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMD 77

Query: 73  ----VDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMS 114
                + + +     +   +   +K Y R LP  L+  +   +F+ 
Sbjct: 78  PKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIK 123

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216

 Score = 63.9 bits (156), Expect = 1e-13
 Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 4/107 (3%)

Query: 15  SVFGVPL--LVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADE 72
               + L  L          P  +I   E +     +   ++R     + + +LR++ D 
Sbjct: 6   EQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQS-SSNLAELRQLLDC 64

Query: 73  VDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPI 119
            D    +++    + +AD  K+Y  +LP  ++        +S+   +
Sbjct: 65  -DTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEV 110

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366

 Score = 63.8 bits (155), Expect = 2e-13
 Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 3/100 (3%)

Query: 15  SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVD 74
            +  VPL     +    +PK I    + L   A  Q  +F+ PG++  +Q++ +  D   
Sbjct: 182 LLQMVPLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDT-- 239

Query: 75  FKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMS 114
             + E      + VA+ +  +   LPE ++  +  +  + 
Sbjct: 240 -SIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLD 278

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201

 Score = 62.3 bits (152), Expect = 3e-13
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 49  DQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQ-AYDVADLVKQYFRELPEVLLTNK 107
            + G++R  G    +++L+E        +  +      + +  L+K + R L E LLT +
Sbjct: 34  TETGLYRISGCDRTVKELKEKFLR-VKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFR 92

Query: 108 SSETFMS 114
            +  FM 
Sbjct: 93  LNRAFME 99

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214

 Score = 52.5 bits (126), Expect = 1e-09
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 10/70 (14%)

Query: 49  DQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKS 108
           D    +R      R           D+ L +VD      +AD +K +   LP  L+T ++
Sbjct: 57  DSESHYRPELPAPR----------TDWSLSDVDQWDTAALADGIKSFLLALPAPLVTPEA 106

Query: 109 SETFMSIFQP 118
           S       + 
Sbjct: 107 SAEARRALRE 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	99.97
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	99.97
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	99.97
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	99.97
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	99.97
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	99.96
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	99.96
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	99.96
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	99.96
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	99.95
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	99.95
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	99.95
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	99.94
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	99.94
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	99.94
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	99.93

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}

Probab=99.97  E-value=5.1e-32  Score=192.88  Aligned_cols=111  Identities=51%  Similarity=0.811  Sum_probs=101.1

Q ss_pred             CCCCCCCCcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHH
Q psy8293           7 FHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAY   86 (124)
Q Consensus         7 ~~~~~~~~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~   86 (124)
                      .++.++ +++||++|++++++++..||.+|..|+++|+++|+++|||||++|+..++++|++.+|.+...++ ++..|+|
T Consensus        12 ~~~~~~-~~vFGv~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~-~~~~~~~   89 (228)
T 3kuq_A           12 ENLYFQ-GSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVN-YEGQSAY   89 (228)
T ss_dssp             --CBCT-TSSTTCCHHHHHHHHSSSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCC-CTTCCHH
T ss_pred             CCCCCC-CCEECCchHHHHHHcCCCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCC-cccCCHH
Confidence            344455 89999999999999999999999999999999999999999999999999999999998766777 7788999


Q ss_pred             HHHHHHHHHHhhCCCCCCChHHHHHHHHHhccc
Q psy8293          87 DVADLVKQYFRELPEVLLTNKSSETFMSIFQPI  119 (124)
Q Consensus        87 ~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~~  119 (124)
                      +||++||.|||+||+||+|.++|+.|+++++..
T Consensus        90 ~va~lLK~fLReLPePLl~~~l~~~~~~~~~~~  122 (228)
T 3kuq_A           90 DVADMLKQYFRDLPEPLMTNKLSETFLQIYQYV  122 (228)
T ss_dssp             HHHHHHHHHHHHSSSCTTCSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcC
Confidence            999999999999999999999999999987643

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}

Probab=99.97  E-value=4.6e-31  Score=184.81  Aligned_cols=107  Identities=18%  Similarity=0.236  Sum_probs=94.1

Q ss_pred             CCCcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC--CCCCHHHHH
Q psy8293          12 NNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV--DSQQAYDVA   89 (124)
Q Consensus        12 ~~~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~--~~~~~~~va   89 (124)
                      ...++||++|++++++++..+|.++..|+++|+++|+++|||||++|+.+++++|++.+|++...+++.  ...|+|+||
T Consensus         4 ~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va   83 (202)
T 2osa_A            4 HVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIIT   83 (202)
T ss_dssp             ---CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHH
T ss_pred             CCCCccCCChHHHHHHcCCCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHHH
Confidence            347899999999999988889999999999999999999999999999999999999999754444421  235899999


Q ss_pred             HHHHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          90 DLVKQYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        90 ~~lK~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      ++||.|||+||+||+|.++|+.|+++++.
T Consensus        84 ~lLK~flreLpePLl~~~~~~~~~~~~~~  112 (202)
T 2osa_A           84 GALKLYFRDLPIPLITYDAYPKFIESAKI  112 (202)
T ss_dssp             HHHHHHHHTCSSCSSCTTTHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCccCCHHHHHHHHHHHhc
Confidence            99999999999999999999999998753

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}

Probab=99.97  E-value=2e-30  Score=183.01  Aligned_cols=102  Identities=29%  Similarity=0.442  Sum_probs=94.6

Q ss_pred             CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCC---CCHHHHHH
Q psy8293          14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDS---QQAYDVAD   90 (124)
Q Consensus        14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~---~~~~~va~   90 (124)
                      .++||++|++++++++..||.++..|+++|+++|+++|||||++|+..++++|++.+|++ ..++ ++.   .|+|+||+
T Consensus        17 ~~vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~-~~~~-~~~~~~~dvh~va~   94 (214)
T 3byi_A           17 DQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQE-EKLN-LDDSQWEDIHVVTG   94 (214)
T ss_dssp             CCSTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTT-CCCC-TTSGGGCSHHHHHH
T ss_pred             CCccCCcHHHHHHHcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcC-CCCC-CCcccccchHHHHH
Confidence            689999999999999999999999999999999999999999999999999999999987 4555 332   49999999


Q ss_pred             HHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          91 LVKQYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        91 ~lK~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      +||.|||+||+||+|.++|+.|+++.+
T Consensus        95 lLK~flreLPePLl~~~l~~~~~~~~~  121 (214)
T 3byi_A           95 ALKMFFRELPEPLFPYSFFEQFVEAIK  121 (214)
T ss_dssp             HHHHHHHHSSSCSSCHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHh
Confidence            999999999999999999999999875

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}

Probab=99.97  E-value=1e-30  Score=182.76  Aligned_cols=103  Identities=18%  Similarity=0.411  Sum_probs=94.3

Q ss_pred             CCCcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q psy8293          12 NNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADL   91 (124)
Q Consensus        12 ~~~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~   91 (124)
                      .++++||++|++++++++  +|.++.+|+++|+++|+++|||||++|+...++++++.+|.+ ..++ ++..|+|+||++
T Consensus         8 ~~~~vFG~~L~~~~~~~~--vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~-~~~~-~~~~d~~~va~l   83 (201)
T 3msx_B            8 MPGQLFGISLPNICENDN--LPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSG-VEVH-LDCESIFVIASV   83 (201)
T ss_dssp             --CCCTTSCHHHHSGGGC--CCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHT-CCCC-TTSSCHHHHHHH
T ss_pred             CCCCeeCCcHHHHhcCCC--CCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccC-CCCC-CCcccHHHHHHH
Confidence            347999999999998754  999999999999999999999999999999999999999998 4566 677899999999


Q ss_pred             HHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          92 VKQYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        92 lK~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      ||.|||+||+||+|.++|+.|+++++.
T Consensus        84 LK~flreLp~pLl~~~l~~~~~~~~~~  110 (201)
T 3msx_B           84 LKDFLRNIPGSIFSSDLYDHWVSVMDQ  110 (201)
T ss_dssp             HHHHHHTSTTTTTTGGGHHHHHHGGGS
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHcc
Confidence            999999999999999999999998754

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}

Probab=99.97  E-value=2.5e-30  Score=184.13  Aligned_cols=110  Identities=31%  Similarity=0.449  Sum_probs=94.1

Q ss_pred             CCCCCCCCCcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCC---C
Q psy8293           6 KFHHFKNNNSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVD---S   82 (124)
Q Consensus         6 k~~~~~~~~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~---~   82 (124)
                      +.+..+. +++||++|++++++++..||.+|.+|+++|+++|+ +|||||++|+..++++|++.+|.+ ...++..   .
T Consensus        12 ~~~~~~~-~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~-~~~~~~~~~~~   88 (229)
T 3iug_A           12 ENLYFQG-ERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSE-HVPDLTKEPYV   88 (229)
T ss_dssp             ------C-CCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTT-CCCCTTSTTTT
T ss_pred             CCCCCCC-CCeECcchHHHHHhcCCCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHHHHHHHhcC-CCCCccccccc
Confidence            3444444 89999999999999999999999999999999999 899999999999999999999987 3344111   2


Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          83 QQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        83 ~~~~~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      .|+|+||++||.|||+||+||+|.++|+.|+++.+.
T Consensus        89 ~dvh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~  124 (229)
T 3iug_A           89 QDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSA  124 (229)
T ss_dssp             TCHHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTS
T ss_pred             cchHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHc
Confidence            499999999999999999999999999999998753

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*

Probab=99.96  E-value=5.4e-30  Score=178.86  Aligned_cols=102  Identities=25%  Similarity=0.352  Sum_probs=93.5

Q ss_pred             CcccccchHHHHhhhCC--CCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCC-CCHHHHHH
Q psy8293          14 NSVFGVPLLVNIQKTGY--ALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDS-QQAYDVAD   90 (124)
Q Consensus        14 ~~vFG~~L~~~~~~~~~--~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~-~~~~~va~   90 (124)
                      .++||++|++++++++.  .||.++..|+++|+++|+++|||||++|+.++++++++.+|++ ..++ ++. .|+|++|+
T Consensus         6 ~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~-~~~~-~~~~~d~~~~a~   83 (198)
T 1tx4_A            6 NQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG-LPVD-FDQYNALHLPAV   83 (198)
T ss_dssp             TCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTT-CCCC-GGGSSCTHHHHH
T ss_pred             CCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCC-CCCC-ccccccchHHHH
Confidence            68999999999988763  7999999999999999999999999999999999999999988 4566 444 48999999


Q ss_pred             HHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          91 LVKQYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        91 ~lK~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      +||.|||+||+||+|.++|+.|+++.+
T Consensus        84 lLK~flreLpePLi~~~l~~~~~~~~~  110 (198)
T 1tx4_A           84 ILKTFLRELPEPLLTFDLYPHVVGFLN  110 (198)
T ss_dssp             HHHHHHHHSSSCTTCGGGHHHHHTGGG
T ss_pred             HHHHHHHHCCCcCCCHHHHHHHHHHHc
Confidence            999999999999999999999998764

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*

Probab=99.96  E-value=2.4e-29  Score=180.44  Aligned_cols=102  Identities=25%  Similarity=0.358  Sum_probs=93.8

Q ss_pred             CcccccchHHHHhhhCC--CCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCC-CCHHHHHH
Q psy8293          14 NSVFGVPLLVNIQKTGY--ALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDS-QQAYDVAD   90 (124)
Q Consensus        14 ~~vFG~~L~~~~~~~~~--~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~-~~~~~va~   90 (124)
                      .++||++|++++++.+.  .||.++..|+++|+++|+++|||||++|+.++++++++.+|++ ..++ ++. .|+|++|+
T Consensus        42 ~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~-~~~~-~~~~~dv~~va~  119 (242)
T 1ow3_A           42 NQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG-LPVD-FDQYNELHLPAV  119 (242)
T ss_dssp             TCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTT-CCCC-GGGSSCTHHHHH
T ss_pred             CCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcC-CCCC-cccccchHHHHH
Confidence            68999999999988764  7999999999999999999999999999999999999999998 4566 444 48999999


Q ss_pred             HHHHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          91 LVKQYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        91 ~lK~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      +||.|||+||+||+|.++|+.|+++.+
T Consensus       120 lLK~flReLPePLl~~~ly~~~~~~~~  146 (242)
T 1ow3_A          120 ILKTFLRELPEPLLTFDLYPHVVGFLN  146 (242)
T ss_dssp             HHHHHHHHSSSCTTCGGGHHHHHTGGG
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHc
Confidence            999999999999999999999998764

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1

Probab=99.96  E-value=4.4e-30  Score=181.54  Aligned_cols=103  Identities=16%  Similarity=0.196  Sum_probs=88.9

Q ss_pred             CcccccchHHHHhhh--CCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q psy8293          14 NSVFGVPLLVNIQKT--GYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADL   91 (124)
Q Consensus        14 ~~vFG~~L~~~~~~~--~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~   91 (124)
                      ..+||++|++++++.  +..||.+|.+|+++|+++|+++|||||++|+..+ ++|++.+|++...++ +...|+|+||++
T Consensus         5 ~~~fGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~-~~~~dv~~va~l   82 (216)
T 1pbw_A            5 VEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVD-LEMIDVHVLADA   82 (216)
T ss_dssp             -------CCCHHHHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCC-GGGBCHHHHHHH
T ss_pred             cccCCCcHHHHHhccCCCCCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCC-ccccCHHHHHHH
Confidence            579999999999864  3579999999999999999999999999999999 999999998866677 667899999999


Q ss_pred             HHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          92 VKQYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        92 lK~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      ||.|||+||+||+|.++|+.|++++++
T Consensus        83 LK~flReLPePLl~~~ly~~~~~~~~~  109 (216)
T 1pbw_A           83 FKRYLLDLPNPVIPAAVYSEMISLAPE  109 (216)
T ss_dssp             HHHHHHTSSSCSSCHHHHHHHHHHGGG
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999863

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A

Probab=99.96  E-value=2.7e-29  Score=176.63  Aligned_cols=102  Identities=21%  Similarity=0.375  Sum_probs=92.1

Q ss_pred             CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC-CCCCHHHHHHHH
Q psy8293          14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV-DSQQAYDVADLV   92 (124)
Q Consensus        14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~-~~~~~~~va~~l   92 (124)
                      .++||++|++++.. +..||.++.+|+++|+++|+++|||||++|+..++++|++.+|++ ..+++. ...|+|+||++|
T Consensus        10 ~~~FG~~L~~~~~~-~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~-~~~~~~~~~~d~~~va~lL   87 (209)
T 2ee4_A           10 SNYFGMPLQDLVTA-EKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQD-HNINLVSMEVTVNAVAGAL   87 (209)
T ss_dssp             CSSSSSCHHHHSCS-SCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHC-TTCCHHHHTCCHHHHHHHH
T ss_pred             CCeeCCcHHHHHhc-CCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcC-CCCCcccCCCCHHHHHHHH
Confidence            68999999998875 457999999999999999999999999999999999999999988 345521 246999999999


Q ss_pred             HHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          93 KQYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        93 K~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      |.|||+||+||+|.++|+.|+++++
T Consensus        88 K~flreLPePLi~~~l~~~~~~~~~  112 (209)
T 2ee4_A           88 KAFFADLPDPLIPYSLHPELLEAAK  112 (209)
T ss_dssp             HHHHHHSSSCSSCTTTHHHHHHHHS
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHh
Confidence            9999999999999999999999875

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}

Probab=99.95  E-value=1.3e-28  Score=177.08  Aligned_cols=102  Identities=25%  Similarity=0.438  Sum_probs=92.0

Q ss_pred             CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC-CCCCHHHHHHHH
Q psy8293          14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV-DSQQAYDVADLV   92 (124)
Q Consensus        14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~-~~~~~~~va~~l   92 (124)
                      .++||++|++++.. +..||.+|..|+++|+++|+++|||||++|+..++++|++.+|.+ ..+++. ...|+|+||++|
T Consensus        51 ~~vFGv~L~~~~~~-~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~-~~~~~~~~~~dvh~va~lL  128 (246)
T 3fk2_A           51 SNYFGVPLTTVVTP-EKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQD-HNLDLAEKDFTVNTVAGAM  128 (246)
T ss_dssp             CSSTTSCGGGGCCS-SSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHC-TTCCSGGGTCCHHHHHHHH
T ss_pred             CCeeCCCHHHHhcC-CCCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcC-CCCCcccccCcHHHHHHHH
Confidence            58999999998875 457999999999999999999999999999999999999999988 345522 246999999999


Q ss_pred             HHHHhhCCCCCCChHHHHHHHHHhc
Q psy8293          93 KQYFRELPEVLLTNKSSETFMSIFQ  117 (124)
Q Consensus        93 K~flr~Lp~PLl~~~~~~~~~~~~~  117 (124)
                      |.|||+||+||+|+++|+.|+++++
T Consensus       129 K~fLReLPePLl~~~l~~~~~~~~~  153 (246)
T 3fk2_A          129 KSFFSELPDPLVPYNMQIDLVEAHK  153 (246)
T ss_dssp             HHHHHHSSSCSSCHHHHHHHHHHTT
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHhc
Confidence            9999999999999999999999875

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}

Probab=99.95  E-value=5e-28  Score=169.32  Aligned_cols=99  Identities=19%  Similarity=0.286  Sum_probs=89.2

Q ss_pred             cchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCC-CHHHHHHHHHHHHh
Q psy8293          19 VPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQ-QAYDVADLVKQYFR   97 (124)
Q Consensus        19 ~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~-~~~~va~~lK~flr   97 (124)
                      -.|++.+..++..||.++.+|+++|+++|+++|||||++|+..++++|++.+|++....+ +... |+|+||++||.|||
T Consensus         4 g~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~-~~~~~d~h~va~lLK~flr   82 (201)
T 2ovj_A            4 GMLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPL-LSKVDDIHAICSLLKDFLR   82 (201)
T ss_dssp             CCGGGGCCSSSSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCC-GGGCCCHHHHHHHHHHHHH
T ss_pred             CcHHHHhcccCCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCcc-ccccCCHHHHHHHHHHHHH
Confidence            468888888889999999999999999999999999999999999999999998843333 4444 99999999999999


Q ss_pred             hCCCCCCChHHHHHHHHHhcc
Q psy8293          98 ELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        98 ~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      +||+||+|.++|+.|+++++.
T Consensus        83 eLpePLi~~~l~~~~~~~~~~  103 (201)
T 2ovj_A           83 NLKEPLLTFRLNRAFMEAAEI  103 (201)
T ss_dssp             TSSSCTTCTTTHHHHHHHHHC
T ss_pred             hCCCCCCCHHHHHHHHHHHhc
Confidence            999999999999999998753

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}

Probab=99.95  E-value=3e-28  Score=171.98  Aligned_cols=96  Identities=19%  Similarity=0.152  Sum_probs=79.5

Q ss_pred             CcccccchHHHHhh--hCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q psy8293          14 NSVFGVPLLVNIQK--TGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADL   91 (124)
Q Consensus        14 ~~vFG~~L~~~~~~--~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~   91 (124)
                      .++||++|++++++  ....||.+|..|+++|+++|+++|||||++|+.     +++    +...++ ++..|+|+||++
T Consensus        20 ~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----lr~----~~~~~d-l~~~dvh~va~l   89 (214)
T 2xs6_A           20 FQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----PRT----DWSLSD-VDQWDTAALADG   89 (214)
T ss_dssp             -----CCCCCHHHHCCTTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----CCC----CCCCTT-GGGCCHHHHHHH
T ss_pred             CcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----HHh----ccccCC-CccCCHHHHHHH
Confidence            68999999999984  346799999999999999999999999999998     333    324455 567899999999


Q ss_pred             HHHHHhhCCCCCCChHHHHHHHHHhccc
Q psy8293          92 VKQYFRELPEVLLTNKSSETFMSIFQPI  119 (124)
Q Consensus        92 lK~flr~Lp~PLl~~~~~~~~~~~~~~~  119 (124)
                      ||.|||+||+||+|.++|+.|+++++..
T Consensus        90 LK~flReLPePLi~~~ly~~~i~~~~~~  117 (214)
T 2xs6_A           90 IKSFLLALPAPLVTPEASAEARRALREA  117 (214)
T ss_dssp             HHHHHHHSSSCSSCHHHHHHHHHHHHCC
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHhcC
Confidence            9999999999999999999999998643

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}

Probab=99.94  E-value=8.4e-28  Score=174.95  Aligned_cols=102  Identities=29%  Similarity=0.471  Sum_probs=80.6

Q ss_pred             CCcccccchHHHHhh---hCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHH
Q psy8293          13 NNSVFGVPLLVNIQK---TGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVA   89 (124)
Q Consensus        13 ~~~vFG~~L~~~~~~---~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va   89 (124)
                      ++++||++|+++++.   ++..||.+|.+|+.+|++ |+++|||||++|+...+++|++.+|.+...   +...++|+||
T Consensus        61 ~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~---~~~~~~~~va  136 (271)
T 3eap_A           61 GGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGC---LSSAPPCDIA  136 (271)
T ss_dssp             CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGG-GTTC--------CHHHHHHHHHHHHHC--------CCCHHHHH
T ss_pred             CCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCC---cccccHHHHH
Confidence            378999999998764   234599999999999975 799999999999999999999999988433   3467999999


Q ss_pred             HHHHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          90 DLVKQYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        90 ~~lK~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      ++||.|||+||+||+|+++|+.|+++.+.
T Consensus       137 ~lLK~fLReLPePLl~~~ly~~~~~~~~~  165 (271)
T 3eap_A          137 GLLKQFFRELPEPILPADLHEALLKAQQL  165 (271)
T ss_dssp             HHHHHHHHHSSSCSSCGGGHHHHHHHTTS
T ss_pred             HHHHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998753

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1

Probab=99.94  E-value=2.6e-27  Score=168.83  Aligned_cols=105  Identities=18%  Similarity=0.244  Sum_probs=75.3

Q ss_pred             CcccccchHHHHhhhC---CCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHH-HHhcCC-CCCCCC--CCCCHH
Q psy8293          14 NSVFGVPLLVNIQKTG---YALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLRE-MADEVD-FKLDEV--DSQQAY   86 (124)
Q Consensus        14 ~~vFG~~L~~~~~~~~---~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~-~~~~~~-~~~~~~--~~~~~~   86 (124)
                      .++||+||+..++++.   ..+|.+|.+|+++|+++|+++|||||++|+..+++++++ .+|.+. ..+++.  ...|+|
T Consensus        16 ~pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh   95 (231)
T 1f7c_A           16 EPVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIK   95 (231)
T ss_dssp             ---------------CCSSHHHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHH
T ss_pred             CCccCCcchhccccccccCCcCccHHHHHHHHHHHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccHH
Confidence            5799999998877643   237899999999999999999999999999999999987 477652 345521  247999


Q ss_pred             HHHHHHHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          87 DVADLVKQYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        87 ~va~~lK~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      +||++||.|||+||+||+|.++|+.|+++++.
T Consensus        96 ~va~lLK~flReLPePLl~~~ly~~~~~~~~~  127 (231)
T 1f7c_A           96 TITSALKTYLRMLPGPLMMYQFQRSFIKAAKL  127 (231)
T ss_dssp             HHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhc
Confidence            99999999999999999999999999998754

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=99.94  E-value=4e-27  Score=182.14  Aligned_cols=105  Identities=18%  Similarity=0.244  Sum_probs=94.7

Q ss_pred             CcccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCC--CCCCHHHHHHH
Q psy8293          14 NSVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEV--DSQQAYDVADL   91 (124)
Q Consensus        14 ~~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~--~~~~~~~va~~   91 (124)
                      .++||++|+++++.++..||.+|..|+++|+++|+++|||||++|+.+.+++|++.+|++...+++.  ...|+|+||++
T Consensus       267 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~l  346 (463)
T 3cxl_A          267 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA  346 (463)
T ss_dssp             CCCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred             ccccccccchhhhccCCCCCeeHHHHHHHHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhhH
Confidence            6899999999999988899999999999999999999999999999999999999999764444421  23589999999


Q ss_pred             HHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          92 VKQYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        92 lK~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      ||.|||+||+||+|.++|+.|+++++.
T Consensus       347 LK~flReLPePLi~~~ly~~~~~~~~~  373 (463)
T 3cxl_A          347 LKLYFRDLPIPLITYDAYPKFIESAKI  373 (463)
T ss_dssp             HHHHHHHCSSCSSCTTTHHHHHHHHHC
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence            999999999999999999999998753

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=99.93  E-value=1.9e-25  Score=168.44  Aligned_cols=85  Identities=19%  Similarity=0.308  Sum_probs=78.1

Q ss_pred             CCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChHHHH
Q psy8293          31 ALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSE  110 (124)
Q Consensus        31 ~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~~  110 (124)
                      .||.+|..|+++|+++|+++|||||++|+..++++|++.+|.+ ...+ + ..|+|++|++||.|||+||+||+|.++|+
T Consensus       198 ~iP~~v~~~i~~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~-~~~~-~-~~dvh~va~lLK~fLReLPePLi~~~ly~  274 (366)
T 3qis_A          198 QVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTS-IPET-I-PGSNHSVAEALLIFLEALPEPVICYELYQ  274 (366)
T ss_dssp             SSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHC-CCSS-C-CSCHHHHHHHHHHHHHHCSSCSSCHHHHH
T ss_pred             CcChHHHHHHHHHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCC-CCCc-c-ccCHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            6899999999999999999999999999999999999999988 3343 2 34999999999999999999999999999


Q ss_pred             HHHHHhcc
Q psy8293         111 TFMSIFQP  118 (124)
Q Consensus       111 ~~~~~~~~  118 (124)
                      .|+++.+.
T Consensus       275 ~~~~~~~~  282 (366)
T 3qis_A          275 RCLDSAYD  282 (366)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHhhh
Confidence            99998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	124
d1xa6a1	196	a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d	2e-19
d1tx4a_	196	a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi	2e-15
d1pbwa_	184	a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu	4e-11
d1f7ca_	191	a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI	1e-10

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (189), Expect = 2e-19
 Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 2/111 (1%)

Query: 16  VFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREM--ADEV 73
           V+   L   ++      P  +      +        G++R  G    I+ ++     D  
Sbjct: 2   VYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGE 61

Query: 74  DFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPIYMYHK 124
              +          +   +K YFR+LP  ++T  +   F+   +      +
Sbjct: 62  KADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADER 112

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 2e-15
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 14  NSVFGVPL--LVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMAD 71
           N  FGV L  L         +P  +  +  +L  +A    GIFR+      ++++++  +
Sbjct: 4   NQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 63

Query: 72  EVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQ 117
                +D       +  A ++K + RELPE LLT       +    
Sbjct: 64  M-GLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLN 108

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (132), Expect = 4e-11
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 20  PLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDE 79
           P L          P  +I   E +     +   ++R     + + +LR++ D  D    +
Sbjct: 2   PDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQS-SSNLAELRQLLDC-DTPSVD 59

Query: 80  VDSQQAYDVADLVKQYFRELPEVLLTNKSSETFMSIFQPI 119
           ++    + +AD  K+Y  +LP  ++        +S+   +
Sbjct: 60  LEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEV 99

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.0 bits (129), Expect = 1e-10
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 35  FIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADE----VDFKLDEVDSQQAYDVAD 90
            I      +     ++ G++R  GV +R+QKL  +  +     + + +     +   +  
Sbjct: 10  IIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITS 69

Query: 91  LVKQYFRELPEVLLTNKSSETFMSIFQPIYM 121
            +K Y R LP  L+  +   +F+   +    
Sbjct: 70  ALKTYLRMLPGPLMMYQFQRSFIKAAKLENQ 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d1xa6a1	196	Beta-chimaerin, C-terminal domain {Human (Homo sap	99.97
d1tx4a_	196	p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96	99.95
d1pbwa_	184	p85 alpha subunit RhoGAP domain {Human (Homo sapie	99.92
d1f7ca_	191	Graf {Chicken (Gallus gallus) [TaxId: 9031]}	99.89
d2plia1	84	Uncharacterized protein NMB0537 {Neisseria meningi	84.64
d2r2za1	84	Putative hemolysin EF0700 {Enterococcus faecalis [	81.83

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-30  Score=179.37  Aligned_cols=104  Identities=17%  Similarity=0.239  Sum_probs=94.2

Q ss_pred             cccccchHHHHhhhCCCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCC--CCCCCCHHHHHHHH
Q psy8293          15 SVFGVPLLVNIQKTGYALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLD--EVDSQQAYDVADLV   92 (124)
Q Consensus        15 ~vFG~~L~~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~--~~~~~~~~~va~~l   92 (124)
                      ++||+||++++++++..||.+|..|++||+++|+++|||||++|+..+++++++.+|++....+  .....|+|++|++|
T Consensus         1 kiFg~~L~~~~~~~~~~iP~iv~~~i~~l~~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~d~~~va~~l   80 (196)
T d1xa6a1           1 KVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGAL   80 (196)
T ss_dssp             CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHSCSSSTTTTTSCCCHHHHHHHHHHHSSTTTTSCCCSSSSCCTHHHHHHH
T ss_pred             CccCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHHhcCCCccccccccccchhHHHHHH
Confidence            5899999999999999999999999999999999999999999999999999999998655444  12345899999999


Q ss_pred             HHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          93 KQYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        93 K~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      |.|||+||+||+|.++|+.+.++.+.
T Consensus        81 K~fLr~Lp~pli~~~~~~~~~~~~~~  106 (196)
T d1xa6a1          81 KLYFRDLPIPVITYDTYSKFIDAAKI  106 (196)
T ss_dssp             HHHHHHCSSCTTCSTTHHHHHTTTTC
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHhc
Confidence            99999999999999999999887754

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-28  Score=170.06  Aligned_cols=104  Identities=23%  Similarity=0.296  Sum_probs=93.4

Q ss_pred             CcccccchHHHHhhhC--CCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q psy8293          14 NSVFGVPLLVNIQKTG--YALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADL   91 (124)
Q Consensus        14 ~~vFG~~L~~~~~~~~--~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~   91 (124)
                      +++||+||++++++++  ..||.++..|++||+++|+++|||||++|+.+.++++++.+|.+ ...++....++|+||++
T Consensus         4 ~~~FG~~L~~l~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~-~~~~~~~~~~~~~va~~   82 (196)
T d1tx4a_           4 NQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG-LPVDFDQYNALHLPAVI   82 (196)
T ss_dssp             TCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTT-CCCCGGGSSCTHHHHHH
T ss_pred             CCCcCCCHHHHHhhCCCCCCCChHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhCC-CCccccccccHHHHHHH
Confidence            6899999999988764  45999999999999999999999999999999999999999988 45553344589999999


Q ss_pred             HHHHHhhCCCCCCChHHHHHHHHHhcc
Q psy8293          92 VKQYFRELPEVLLTNKSSETFMSIFQP  118 (124)
Q Consensus        92 lK~flr~Lp~PLl~~~~~~~~~~~~~~  118 (124)
                      ||.|||+||+||+|.+.|+.|+++.+.
T Consensus        83 lK~fLr~Lp~pLi~~~~~~~~~~~~~~  109 (196)
T d1tx4a_          83 LKTFLRELPEPLLTFDLYPHVVGFLNI  109 (196)
T ss_dssp             HHHHHHHSSSCTTCGGGHHHHHTGGGS
T ss_pred             HHHHHHhCCCCcchHHHHHHHHHHHhc
Confidence            999999999999999999999987753

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.6e-26  Score=155.31  Aligned_cols=87  Identities=17%  Similarity=0.286  Sum_probs=79.4

Q ss_pred             CCCcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCChHHH
Q psy8293          30 YALPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEVLLTNKSS  109 (124)
Q Consensus        30 ~~vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~PLl~~~~~  109 (124)
                      ..||.++.+|+++|+++|+++|||||++|+. .++++++.+|++....+ ++..|+|++|++||.|||+||+||+|.++|
T Consensus        12 ~~vP~~l~~~i~~ie~~gl~~eGIFR~~g~~-~i~~l~~~~~~~~~~~~-~~~~~~~~va~lLK~flreLp~plip~~~~   89 (184)
T d1pbwa_          12 DIAPPLLIKLVEAIEKKGLECSTLYRTQSSS-NLAELRQLLDCDTPSVD-LEMIDVHVLADAFKRYLLDLPNPVIPAAVY   89 (184)
T ss_dssp             SCSCHHHHHHHHHHHHHHTTCTTTTSSCCSC-CTTHHHHHSCSSSSCCC-GGGBCHHHHHHHHHHHHHTSSSCSSCHHHH
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCCeeeCCchH-HHHHHHHHHhcCCCccC-cccCCHHHHHHHHHHHHHhCCCccccHHHH
Confidence            4599999999999999999999999999985 58999999998866666 678899999999999999999999999999


Q ss_pred             HHHHHHhcc
Q psy8293         110 ETFMSIFQP  118 (124)
Q Consensus       110 ~~~~~~~~~  118 (124)
                      +.|++++.+
T Consensus        90 ~~~~~~~~~   98 (184)
T d1pbwa_          90 SEMISLAPE   98 (184)
T ss_dssp             HHHHHHGGG
T ss_pred             HHHHHHHhc
Confidence            999987654

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.89  E-value=1.3e-23  Score=143.85  Aligned_cols=88  Identities=18%  Similarity=0.254  Sum_probs=76.1

Q ss_pred             CcHHHHHHHHHHHhcCCCccCeeecCCChHHHHHHHHHHhcCCCCCC----CCCCCCHHHHHHHHHHHHhhCCCCCCChH
Q psy8293          32 LPKFIISSFEWLINNASDQIGIFRKPGVKTRIQKLREMADEVDFKLD----EVDSQQAYDVADLVKQYFRELPEVLLTNK  107 (124)
Q Consensus        32 vP~~l~~~~~~l~~~gl~~eGifR~~g~~~~i~~l~~~~~~~~~~~~----~~~~~~~~~va~~lK~flr~Lp~PLl~~~  107 (124)
                      .|.+|.+|+++|+++|+++|||||++|+..+++++++.++.+....+    .....|+|++|+++|.|||+||+||+|.+
T Consensus         7 ~~~iv~~ci~~l~~~gl~~eGIFR~~G~~~~v~~l~~~~~~~~~~~~~~~~~~~~~dv~~va~~lK~~lreLp~pLi~~~   86 (191)
T d1f7ca_           7 GFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQ   86 (191)
T ss_dssp             HHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHH
T ss_pred             ccHHHHHHHHHHHHhCCCCCCeeeCCCCHHHHHHHHHHHhCcCcccccccccccccCHHHHHHHHHHHHHhCCCCccHHH
Confidence            47899999999999999999999999999999999999997733221    13467999999999999999999999999


Q ss_pred             HHHHHHHHhccc
Q psy8293         108 SSETFMSIFQPI  119 (124)
Q Consensus       108 ~~~~~~~~~~~~  119 (124)
                      +|+.|+.+.+..
T Consensus        87 ~~~~~~~~~~~~   98 (191)
T d1f7ca_          87 FQRSFIKAAKLE   98 (191)
T ss_dssp             HHHHHHHHHTCS
T ss_pred             HHHHHHHHHhcc
Confidence            999999887643

>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NMB0537
species: Neisseria meningitidis [TaxId: 487]

Probab=84.64  E-value=0.34  Score=27.00  Aligned_cols=46  Identities=20%  Similarity=0.224  Sum_probs=35.4

Q ss_pred             ccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy8293          50 QIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEV  102 (124)
Q Consensus        50 ~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~P  102 (124)
                      .++-|+++|+. .+..+.+.++..      +...+..++++++-..+..+|..
T Consensus         9 ~~~~~~v~g~~-~l~dl~~~~~~~------l~~~~~~TigG~i~~~l~~iP~~   54 (84)
T d2plia1           9 SSERWRIHAAT-EIEDINTFFGTE------YSSEEADTIGGLVIQELGHLPVR   54 (84)
T ss_dssp             ETTEEEEETTC-BHHHHHHHHCCC------CCCSSCCBHHHHHHHHHSSCCCT
T ss_pred             CCCEEEEEecC-CHHHHHHHhCCC------CCccccHHHHHHHHHHhCccccC
Confidence            35789999986 677788888643      23446789999999999999864

>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin EF0700
species: Enterococcus faecalis [TaxId: 1351]

Probab=81.83  E-value=0.49  Score=26.23  Aligned_cols=46  Identities=11%  Similarity=0.144  Sum_probs=34.5

Q ss_pred             ccCeeecCCChHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy8293          50 QIGIFRKPGVKTRIQKLREMADEVDFKLDEVDSQQAYDVADLVKQYFRELPEV  102 (124)
Q Consensus        50 ~eGifR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~flr~Lp~P  102 (124)
                      .+|.|+++|.. .+..+.+.++-.      +...+..++|+.+-..+..+|+.
T Consensus         7 ~~~~~~v~G~~-~l~dl~~~l~~~------l~~~~~~TigG~i~~~lg~iP~~   52 (84)
T d2r2za1           7 ADNEYLVQGRM-LIDEFNEVFETD------LHMSDVDTMAGYLITALGTIPDE   52 (84)
T ss_dssp             ETTEEEEETTS-BHHHHHHHHTCC------CCCTTCCBHHHHHHHHHSSCCCT
T ss_pred             CCCEEEEEeeC-CHHHHHHHHCcC------CCCccchhHHHHHHHHhCcCCCC
Confidence            46889999974 556677777643      23456789999999999999875