Psyllid ID: psy8312

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MSQNPSETFDEPDSDSGGEDNGTTRHKSLSEAAREYEEAARACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVKTWIELGRGQLRLNDINNSLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTAIENGQAKVYLVKV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccEEEccccccEEEEEEEcEEEEEEccccccEEEEEEEEEEEcccccEEEEEEEEccccEEEEccccccccEEEcccccEEEEEEEEccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHHHHHHHHcHcHHcccccccEEEEcccccccEEEEEEEEEEEEcccccEEEcccEEEEEcccccccEEEEEEccccEEEEEEcccccccEEEcccccEEEEEEEccccEEEEEEEc
Coil and Loop (DISEMBL)
msqnpsetfdepdsdsggedngttrHKSLSEAAREYEEAARACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVKTWIELGRGQLRLNDINNSLSRIVIRVVGSLRVILNTKIWAEMVvqkpsdnsvRLTAIENGQAKVYLVKV
Flexible Loop (DISEMBL)
msqnpsetfdepdsdsggedngttrHKSLSEAAREYEEAARACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVKTWIELGRGQLRLNDINNSLSRIVIRVVGSLRVILNTKIWAemvvqkpsdnsvrltaiengqakvylvkv
Low Complexity Region (SEG)
MSQNPSETFDEPDSDSGGEDNGTTRHKSLSeaareyeeaaraCKRKYeavavvtgeeeevNILQINCKLFLYDSVKTWIELGRGQLRLNDINNSLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTAIENGQAKVYLVKV
Disordered region (IsUnstruct)
*****************************************ACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVKTWIELGRGQLRLNDINNSLSRIVIRVVGSLRVILNTKIWAEMVVQKP***SVRLTAIENGQAKVYL***
Disordered Region (DISOPRED)
******************************************************GEEEEVNILQINCKLFLYDSVKTWIELGRGQLRLNDINNSLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTAIENGQAKVYLVKV
Disordered Region (DISEMBL)
******************************************CKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVKTWIELGRGQLRLNDINNSLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTAIENGQAKVYLVKV
Disordered Region (DISPRO)
***************************************A*ACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVKTWIELGRGQLRLNDINNSLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTAIENGQAKVYLVKV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSQNPSETFDEPDSDSGGEDNGTTRxxxxxxxxxxxxxxxxxxxxxYEAVAVVTGEEEEVNILQINCKLFLYDSVKTWIELGRGQLRLNDINNSLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTAIENGQAKVYLVKV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
ZFIN|ZDB-GENE-040426-1627	525	zgc:66385 "zgc:66385" [Danio r	0.572	0.158	0.527	3.6e-19
UNIPROTKB|F1SBU0	290	RANBP3 "Uncharacterized protei	0.572	0.286	0.505	2.8e-18
UNIPROTKB|Q9H6Z4	567	RANBP3 "Ran-binding protein 3"	0.572	0.146	0.494	4.5e-18
UNIPROTKB|F1PS47	490	RANBP3 "Uncharacterized protei	0.572	0.169	0.505	1.6e-17
UNIPROTKB|Q24K04	518	RANBP3 "Uncharacterized protei	0.951	0.266	0.371	1.8e-17
UNIPROTKB|F1PS48	557	RANBP3 "Uncharacterized protei	0.572	0.149	0.505	2.2e-17
UNIPROTKB|F1NJ42	513	RANBP3 "Uncharacterized protei	0.572	0.161	0.505	2.3e-17
UNIPROTKB|F5H4C2	439	RANBP3 "Ran-binding protein 3"	0.572	0.189	0.494	2.5e-17
UNIPROTKB|B7Z7F3	494	RANBP3 "Ran-binding protein 3"	0.572	0.168	0.494	3.5e-17
MGI|MGI:1919060	491	Ranbp3 "RAN binding protein 3"	0.572	0.169	0.505	4.4e-17

ZFIN|ZDB-GENE-040426-1627 zgc:66385 "zgc:66385" [Danio rerio (taxid:7955)]

 Score = 222 (83.2 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
 Identities = 48/91 (52%), Positives = 68/91 (74%)

Query:    61 NILQINCKLFLYDS-VKTWIELGRGQLRLNDI----NNSL-SRIVIRVVGSLRVILNTKI 114
             N+LQ+ CKLF++D  V++W+E GRG LRLND+    + SL SR+V+R  GSLR+ILNTK+
Sbjct:   352 NVLQMQCKLFVFDKPVQSWVERGRGLLRLNDMASTDDGSLQSRLVMRTQGSLRLILNTKL 411

Query:   115 WAEMVVQKPSDNSVRLTAI--ENGQAKVYLV 143
             W +M V K S+ SVR+TA+  E+   KV+L+
Sbjct:   412 WPQMQVDKASEKSVRITAMDTEDQGVKVFLI 442

GO:0046907 "intracellular transport" evidence=IEA

UNIPROTKB|F1SBU0 RANBP3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 46/91 (50%), Positives = 68/91 (74%)

Query:    61 NILQINCKLFLYDSV-KTWIELGRGQLRLNDI----NNSL-SRIVIRVVGSLRVILNTKI 114
             N+LQI CKLF++D   ++W+E GRG LRLND+    + +L SR+V+R  GSLR+ILNTK+
Sbjct:   124 NVLQIQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKL 183

Query:   115 WAEMVVQKPSDNSVRLTAI--ENGQAKVYLV 143
             WA+M + K S+ S+R+TA+  E+   KV+L+
Sbjct:   184 WAQMQIDKASEKSIRITAMDTEDQGVKVFLI 214

GO:0070412 "R-SMAD binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046907 "intracellular transport" evidence=IEA

UNIPROTKB|Q9H6Z4 RANBP3 "Ran-binding protein 3" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
 Identities = 45/91 (49%), Positives = 68/91 (74%)

Query:    61 NILQINCKLFLYDSV-KTWIELGRGQLRLNDI----NNSL-SRIVIRVVGSLRVILNTKI 114
             N+LQ+ CKLF++D   ++W+E GRG LRLND+    + +L SR+V+R  GSLR+ILNTK+
Sbjct:   400 NVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKL 459

Query:   115 WAEMVVQKPSDNSVRLTAI--ENGQAKVYLV 143
             WA+M + K S+ S+R+TA+  E+   KV+L+
Sbjct:   460 WAQMQIDKASEKSIRITAMDTEDQGVKVFLI 490

GO:0046907 "intracellular transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0070412 "R-SMAD binding" evidence=IPI

GO:0008536 "Ran GTPase binding" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1PS47 RANBP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 221 (82.9 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 46/91 (50%), Positives = 68/91 (74%)

Query:    61 NILQINCKLFLYDSV-KTWIELGRGQLRLNDI----NNSL-SRIVIRVVGSLRVILNTKI 114
             N+LQI CKLF++D   ++W+E GRG LRLND+    + +L SR+V+R  GSLR+ILNTK+
Sbjct:   325 NVLQIQCKLFVFDKASQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKL 384

Query:   115 WAEMVVQKPSDNSVRLTAI--ENGQAKVYLV 143
             WA+M + K S+ S+R+TA+  E+   KV+L+
Sbjct:   385 WAQMQIDKASEKSIRITAMDTEDQGVKVFLI 415

GO:0046907 "intracellular transport" evidence=IEA

UNIPROTKB|Q24K04 RANBP3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 221 (82.9 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 55/148 (37%), Positives = 82/148 (55%)

Query:     4 NPSETFDEPDSDSGGEDNGTTRHKSLSXXXXXXXXXXXXCKRKYXXXXXXXXXXXXXNIL 63
             N   T  E  S+S  ++  T   +SL+             K                N+L
Sbjct:   297 NRENTAAESGSESSSQE-ATPEKESLAESAAAYTKATAR-KCLLEKVEVITGEEAESNVL 354

Query:    64 QINCKLFLYDSV-KTWIELGRGQLRLNDI----NNSL-SRIVIRVVGSLRVILNTKIWAE 117
             QI CKLF++D   ++W+E GRG LRLND+    + +L SR+V+R  GSLR+ILNTK+WA+
Sbjct:   355 QIQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQ 414

Query:   118 MVVQKPSDNSVRLTAI--ENGQAKVYLV 143
             M + K S+ S+R+TA+  E+   KV+L+
Sbjct:   415 MQMDKASEKSIRITAMDTEDQGVKVFLI 442

GO:0070412 "R-SMAD binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046907 "intracellular transport" evidence=IEA

UNIPROTKB|F1PS48 RANBP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 221 (82.9 bits), Expect = 2.2e-17, P = 2.2e-17
 Identities = 46/91 (50%), Positives = 68/91 (74%)

Query:    61 NILQINCKLFLYDSV-KTWIELGRGQLRLNDI----NNSL-SRIVIRVVGSLRVILNTKI 114
             N+LQI CKLF++D   ++W+E GRG LRLND+    + +L SR+V+R  GSLR+ILNTK+
Sbjct:   392 NVLQIQCKLFVFDKASQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKL 451

Query:   115 WAEMVVQKPSDNSVRLTAI--ENGQAKVYLV 143
             WA+M + K S+ S+R+TA+  E+   KV+L+
Sbjct:   452 WAQMQIDKASEKSIRITAMDTEDQGVKVFLI 482

GO:0046907 "intracellular transport" evidence=IEA

UNIPROTKB|F1NJ42 RANBP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 220 (82.5 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 46/91 (50%), Positives = 69/91 (75%)

Query:    61 NILQINCKLFLYD-SVKTWIELGRGQLRLNDI----NNSL-SRIVIRVVGSLRVILNTKI 114
             N+LQI CKLF++D + ++W+E GRG LRLND+    + +L SR+V+R  GSLR+ILNTK+
Sbjct:   348 NVLQIQCKLFVFDKNSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKL 407

Query:   115 WAEMVVQKPSDNSVRLTAI--ENGQAKVYLV 143
             WA+M + K S+ S+R+TA+  E+   KV+L+
Sbjct:   408 WAQMQIDKASEKSIRITAMDTEDQGVKVFLI 438

GO:0046907 "intracellular transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0070412 "R-SMAD binding" evidence=IEA

UNIPROTKB|F5H4C2 RANBP3 "Ran-binding protein 3" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 45/91 (49%), Positives = 68/91 (74%)

Query:    61 NILQINCKLFLYDSV-KTWIELGRGQLRLNDI----NNSL-SRIVIRVVGSLRVILNTKI 114
             N+LQ+ CKLF++D   ++W+E GRG LRLND+    + +L SR+V+R  GSLR+ILNTK+
Sbjct:   272 NVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKL 331

Query:   115 WAEMVVQKPSDNSVRLTAI--ENGQAKVYLV 143
             WA+M + K S+ S+R+TA+  E+   KV+L+
Sbjct:   332 WAQMQIDKASEKSIRITAMDTEDQGVKVFLI 362

GO:0046907 "intracellular transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|B7Z7F3 RANBP3 "Ran-binding protein 3" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 3.5e-17, P = 3.5e-17
 Identities = 45/91 (49%), Positives = 68/91 (74%)

Query:    61 NILQINCKLFLYDSV-KTWIELGRGQLRLNDI----NNSL-SRIVIRVVGSLRVILNTKI 114
             N+LQ+ CKLF++D   ++W+E GRG LRLND+    + +L SR+V+R  GSLR+ILNTK+
Sbjct:   327 NVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKL 386

Query:   115 WAEMVVQKPSDNSVRLTAI--ENGQAKVYLV 143
             WA+M + K S+ S+R+TA+  E+   KV+L+
Sbjct:   387 WAQMQIDKASEKSIRITAMDTEDQGVKVFLI 417

GO:0046907 "intracellular transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1919060 Ranbp3 "RAN binding protein 3" [Mus musculus (taxid:10090)]

 Score = 217 (81.4 bits), Expect = 4.4e-17, P = 4.4e-17
 Identities = 46/91 (50%), Positives = 67/91 (73%)

Query:    61 NILQINCKLFLYDSV-KTWIELGRGQLRLNDI----NNSL-SRIVIRVVGSLRVILNTKI 114
             N+LQI CKLF++D   ++W+E GRG LRLND+    + +L SR+V+R  GSLR+ILNTK+
Sbjct:   324 NVLQIQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKL 383

Query:   115 WAEMVVQKPSDNSVRLTAI--ENGQAKVYLV 143
             WA+M + K S+ S+R+TA   E+   KV+L+
Sbjct:   384 WAQMQMDKASEKSIRITATDAEDQGVKVFLI 414

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0046907 "intracellular transport" evidence=IEA

GO:0070412 "R-SMAD binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	145
cd13180	113	cd13180, RanBD_RanBP3, Ran-binding protein 3 Ran-b	1e-39
smart00160	130	smart00160, RanBD, Ran-binding domain	3e-13
cd00835	111	cd00835, RanBD_family, Ran-binding domain	1e-12
cd13169	112	cd13169, RanBD_NUP50_plant, Ran-binding protein 2,	6e-09
cd13170	109	cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding d	9e-08
pfam00638	122	pfam00638, Ran_BP1, RanBP1 domain	3e-07
cd13179	126	cd13179, RanBD_RanBP1, Ran-binding domain	5e-06
cd13181	111	cd13181, RanBD_NUP2, Nucleoporin 2 Ran-binding dom	5e-06

>gnl|CDD|241334 cd13180, RanBD_RanBP3, Ran-binding protein 3 Ran-binding domain

 Score =  128 bits (325), Expect = 1e-39
 Identities = 48/93 (51%), Positives = 67/93 (72%), Gaps = 6/93 (6%)

Query: 58  EEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNSL----SRIVIRVVGSLRVILNT 112
            E N+LQINCKLF +D  K +W+E GRG LRLND  +      SR+V+R  G+LRVILNT
Sbjct: 1   GERNVLQINCKLFAFDKSKQSWVERGRGTLRLNDKASEDGPFQSRLVMRTQGTLRVILNT 60

Query: 113 KIWAEMVVQKPSDNSVRLTAI-ENGQAKVYLVK 144
           KIW  M V++ S+ S+R+TA+  +G+ KV+L++
Sbjct: 61  KIWPGMTVERASEKSLRITAMDPDGEVKVFLIQ 93

RanBP3, a Ran-interacting nuclear protein, unlike the related proteins RanBP1 and RanBP2, which promote disassembly of the export complex in the cytosol, acts as a CRM1 cofactor, enhancing nuclear export signal (NES) export by stabilizing the export complex in the nucleus. CRM1/Exportin1 is responsible for exporting many proteins and ribonucleoproteins from the nucleus to the cytosol. RanBP3 also alters the cargo selectivity of CRM1, promoting recognition of the NES of HIV-1 Rev and of other cargos while deterring recognition of the import adaptor protein Snurportin1. RanBP3 contains a N-terminal nuclear localization signal (NLS), 2 FxFG motifs, and a single RanBD. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. Length = 113

>gnl|CDD|197549 smart00160, RanBD, Ran-binding domain

 Score = 62.0 bits (151), Expect = 3e-13
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 50  VAVVTGEEEEVNILQINCKLFLYDS-VKTWIELGRGQLRLN--DINNSLSRIVIRVVGSL 106
           V V TGEE+E  I     KL+ + +  K W E G G L++     N    RIV+R  G L
Sbjct: 10  VEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVL 69

Query: 107 RVILNTKIWAEMVVQ--KPSDNSVRLTAIENG 136
           +V  N  I+  M ++    S+ +++ T  +  
Sbjct: 70  KVCANHPIFKSMTLKPLAGSNRALKWTPEDFA 101

Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase). Length = 130

>gnl|CDD|241232 cd00835, RanBD_family, Ran-binding domain

 Score = 60.0 bits (146), Expect = 1e-12
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 8/95 (8%)

Query: 59  EVNILQINCKLFLYDS-VKTWIELGRGQLRLN-DINNSLSRIVIRVVGSLRVILNTKIWA 116
           E  +     KL+ +D   K W E G G L++         RI++R     +V LN  I  
Sbjct: 1   EEVLFSERAKLYRFDKDTKEWKERGVGDLKILKHKETGKYRILMRREQVGKVCLNHLITP 60

Query: 117 EMVVQK--PSDNSVRLTAI----ENGQAKVYLVKV 145
           EM ++    SD +V  TA+      G+ + + ++ 
Sbjct: 61  EMKLKPTAGSDKAVVWTAVDDSDGEGKPETFALRF 95

The RanBD is present in RanBD1, RanBD2, RanBD3, Nuc2, and Nuc50. Most of these proteins have a single RanBD, with the exception of RanBD2 which has 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The RanBD proteins of the nuclear pore complex (NPC): nucleoporin 1 (NUP1), NUP2, NUP61, and Nuclear Pore complex Protein 9 (npp-9) are present in the parent, but specific models were not made due to lineage. To date there been no reports of inositol phosphate or phosphoinositide binding by Ran-binding proteins. Length = 111

>gnl|CDD|241323 cd13169, RanBD_NUP50_plant, Ran-binding protein 2, repeat 1

 Score = 50.1 bits (120), Expect = 6e-09
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 69  LFLYDSVKTWIELGRGQLRLNDINNSLSRIVIRVVGSLRVILNTKIWAEMVVQKPSD 125
           LF + +   W E GRG+LR+N      +R+V+R  G+ R++LN  ++ +M + K   
Sbjct: 11  LFEFIT-GGWKERGRGELRVNLSTTGKARLVMRAKGNYRLLLNANLFPDMKLTKMMG 66

RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP#importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The first RanBD2 is present in this hierarchy. Length = 112

>gnl|CDD|241324 cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding domain

 Score = 47.3 bits (113), Expect = 9e-08
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 67  CKLFLYDSVKTWIELGRGQLRLNDI-NNSLSRIVIRVVGSL-RVILNTKIWAEMVVQKPS 124
           CKLF+      W + G G L L  + + S +R+++R   SL +++LN  ++  M V    
Sbjct: 9   CKLFVKKDDGEWKDKGVGTLYLKKVKDTSKARLLVRADTSLGKILLNILLYPGMPVTVTG 68

Query: 125 DNSVRLTAIEN----GQAKVYLVKV 145
            N+V L  + N    G    +L++V
Sbjct: 69  KNNVMLVCVPNPPAEGGPVTFLLRV 93

NUP50 acts as a cofactor for the importin-alpha:importin-beta heterodimer, which allows for transportation of many nuclear-targeted proteins through nuclear pore complexes. It is thought to function primarily at the terminal stages of nuclear protein import to coordinate import complex disassembly and importin recycling. NUP50 is composed of a N-terminal NUP50 domain which binds the C-terminus of importin-beta, a central domain which binds importin-beta, and a C-terminal RanBD which binds importin-beta through Ran-GTP. NUP50:importin-alpha then binds cargo and can stimulate nuclear import. The N-terminal domain of NUP50 is also able to displace nuclear localization signals from importin-alpha. NUP50 interacts with cyclin-dependent kinase inhibitor 1B which binds to cyclin E-CDK2 or cyclin D-CDK4 complexes and prevents its activation, thereby controling the cell cycle progression at G1. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. Length = 109

>gnl|CDD|109686 pfam00638, Ran_BP1, RanBP1 domain

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 8/101 (7%)

Query: 52  VVTGEEEEVNILQINCKLFLYDS-VKTWIELGRGQLRLN-DINNSLSRIVIRVVGSLRVI 109
           V +GEE+E  +  +  KLF +D+ VK W E G G +++  + ++   RI++R    L+V 
Sbjct: 2   VKSGEEDEEVLFSVRAKLFRFDAEVKQWKERGVGDIKILKNKDDGKVRILMRRDQVLKVC 61

Query: 110 LNTKIWAEMVVQ--KPSDNS----VRLTAIENGQAKVYLVK 144
            N  I  +M ++    SD S        A   G+ +   ++
Sbjct: 62  ANHYITPDMTLKPLAGSDRSWVWTAADFADGEGKPEQLAIR 102

Length = 122

>gnl|CDD|241333 cd13179, RanBD_RanBP1, Ran-binding domain

 Score = 43.0 bits (102), Expect = 5e-06
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 49  AVAVVTGEEEEVNILQINCKLFLYDSV---KTWIELGRGQLRL--NDINNSLSRIVIRVV 103
            V V T EE+E  + ++  KL+ +D+      W E G G +++  +   N + R+++R  
Sbjct: 1   EVEVKTNEEDEEELFKMRAKLYRFDTENDPPEWKERGTGDVKILKHKETNKI-RLLMRRD 59

Query: 104 GSLRVILNTKIWAEMVVQKPSDNSVR 129
            +L++  N  I  EM + KP+  S R
Sbjct: 60  KTLKICANHYITPEMKL-KPNCGSDR 84

RanBP1 interacts specifically with GTP-charged Ran. RanBP1 does not activate GTPase activity of Ran, but does markedly increase GTP hydrolysis by the RanGTPase-activating protein (RanGAP1). In both mammalian cells and in yeast, RanBP1 acts as a negative regulator of Regulator of chromosome condensation 1 (RCC1) by inhibiting RCC1-stimulated guanine nucleotide release from Ran. In addition to Ran, RanBP1 has been shown to interact with Exportin-1 and Importin subunit beta-1 which docks the NPC at the cytoplasmic side of the nuclear pore complex. RabBP1 contains a single RanBD. The RanBD is present in RanBD1, RanBD2, RanBD3, Nuc2, and Nuc50. Most of these proteins have a single RanBD, with the exception of RanBD2 which has 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. Length = 126

>gnl|CDD|241335 cd13181, RanBD_NUP2, Nucleoporin 2 Ran-binding domain

 Score = 42.4 bits (100), Expect = 5e-06
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 7/94 (7%)

Query: 58  EEVNILQINCKLFLYDSVKT---WIELGRGQLR-LNDINNSLSRIVIRVVGSLRVILNTK 113
           EEV +     KL L+D       +   G G+L+ L + +   SRI++R  GSLRV+LNT 
Sbjct: 2   EEV-LYTKRAKLMLFDPSNKESPYTSKGVGELKLLKNKDTGKSRILVRAEGSLRVLLNTL 60

Query: 114 IWAEMVVQKPSD-NSVRLTAI-ENGQAKVYLVKV 145
           +  ++  +K  + + VR+  I  +G+ + Y++KV
Sbjct: 61  VLKDVKYEKMGNGSLVRVPTINSDGKIETYVIKV 94

Yeast protein Nup2 transiently associates with Nuclear pore complexes (NPCs) and when artificially tethered to DNA, can prevent the spread of transcriptional activation or repression between flanking genes, a function termed boundary activity (BA). Nup2 and the Ran guanylyl-nucleotide exchange factor, Prp20, interact at specific chromatin regions and enable the NPC to play an active role in chromatin organization. Nup60p, the nup responsible for anchoring Nup2 and the Mlp proteins to the NPC is required for Nup2-dependent BA. Nup2 contains an N-terminal Nup50 family domain and a C-terminal RanBD. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
cd00835	122	RanBD Ran-binding domain. Ran-binding domain; This	100.0
smart00160	130	RanBD Ran-binding domain. Domain of apporximately	100.0
PF00638	122	Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is	100.0
COG5171	211	YRB1 Ran GTPase-activating protein (Ran-binding pr	99.96
KOG0866|consensus	327		99.79
KOG0864|consensus	215		99.65
KOG2724|consensus	487		99.53
cd00837	104	EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homolog	98.93
PF00568	111	WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1	98.24
cd01206	111	Homer Homer type EVH1 domain. Homer type EVH1 doma	98.17
cd01207	111	Ena-Vasp Enabled-VASP-type homology (EVH1) domain.	98.12
smart00461	106	WH1 WASP homology region 1. Region of the Wiskott-	96.93
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.67
PF06058	122	DCP1: Dcp1-like decapping family; InterPro: IPR010	84.07

>cd00835 RanBD Ran-binding domain

Probab=100.00  E-value=1.2e-34  Score=212.89  Aligned_cols=96  Identities=28%  Similarity=0.493  Sum_probs=89.7

Q ss_pred             eecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecCC--C
Q psy8312          50 VAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKPS--D  125 (145)
Q Consensus        50 vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~--~  125 (145)
                      |++.||||+|++||+.|||||+|++++ +|+|||+|+||||+++++ ++|||||+|+++||+||++|+++|++++++  +
T Consensus         1 v~v~tGEE~E~~if~~r~KLy~~~~~~~~WkerG~G~lki~~~k~~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~~   80 (122)
T cd00835           1 VEVKTGEEDEEVIFSVRAKLYRFDDETKEWKERGVGELKILKHKDTGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNSD   80 (122)
T ss_pred             CCcccCCcCcEEEEEEEeEEEEEcCCCCCCeeceEEEEEEEEcCCCCcEEEEEEeCCccEEEEeeEecCCcEEeecCCCC
Confidence            689999999999999999999999866 899999999999999975 999999999999999999999999999986  7


Q ss_pred             CeEEEEEE--c--CCcceEEEEeC
Q psy8312         126 NSVRLTAI--E--NGQAKVYLVKV  145 (145)
Q Consensus       126 k~v~~~a~--~--~~~~~~~likv  145 (145)
                      ++|+|++.  +  ++++++|+|||
T Consensus        81 k~~~~~~~d~~~~~~~~~~~~lrf  104 (122)
T cd00835          81 KSIVWAAMDFSDDEPKPETFAIRF  104 (122)
T ss_pred             cEEEEEeeecCCCCCcEEEEEEEE
Confidence            99999988  2  27999999997

Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.

>smart00160 RanBD Ran-binding domain

Probab=100.00  E-value=1.5e-33  Score=210.02  Aligned_cols=103  Identities=28%  Similarity=0.429  Sum_probs=93.3

Q ss_pred             ccccCceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC--eeEEEEEecCceeEEEeeeeccceE
Q psy8312          43 CKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS--LSRIVIRVVGSLRVILNTKIWAEMV  119 (145)
Q Consensus        43 ~~~~l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~--~~RivmR~d~~~rvllN~~i~~~m~  119 (145)
                      +.+.|++|++.||||+|+++|+.|||||+|++.+ +|+|||+|.||||+++++  ++|||||+++++||+|||+|+++|+
T Consensus         3 ~~~~l~~ve~~tgEE~E~~lf~~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~~~~   82 (130)
T smart00160        3 PVVPLPDVEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFKSMT   82 (130)
T ss_pred             CcccCccccccCCCcCeEEEEEEEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecCCcE
Confidence            4567888999999999999999999999999766 899999999999999875  9999999999999999999999999


Q ss_pred             EecCC--CCeEEEEEE----cCCcceEEEEeC
Q psy8312         120 VQKPS--DNSVRLTAI----ENGQAKVYLVKV  145 (145)
Q Consensus       120 ~~~~~--~k~v~~~a~----~~~~~~~~likv  145 (145)
                      +.++.  .+++.|++.    +++++++|+|||
T Consensus        83 ~~~~~~~~~~~~~~~~d~~d~~~~~~~~~irf  114 (130)
T smart00160       83 LKPLAGSNRALKWTPEDFADDIPKLVLYAVRF  114 (130)
T ss_pred             EeecCCCcceEEEeeeecCCCCCceEEEEEEe
Confidence            99863  478899775    346899999997

Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).

>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm

Probab=100.00  E-value=3.5e-32  Score=198.71  Aligned_cols=95  Identities=34%  Similarity=0.586  Sum_probs=83.2

Q ss_pred             ecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecC--CCC
Q psy8312          51 AVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKP--SDN  126 (145)
Q Consensus        51 ev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~--~~k  126 (145)
                      +|+||||+|+++|+.|||||+|++++ +|++||+|.|||++++++ ++|||||+++++||+||++|+++|++++.  +.+
T Consensus         1 ev~tgEE~E~~l~~~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~~   80 (122)
T PF00638_consen    1 EVKTGEEDEEILFEVRAKLYRFDKEDKEWKERGVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSEK   80 (122)
T ss_dssp             CCCHSSSSEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--TTC-EEESTTTTT
T ss_pred             CCcccccCcEEEEEEEEEEEEEeCCCCCccccceeEEEEEEccCCcceEEEEEEcccCceeEEEEecCCceecccccCCc
Confidence            58999999999999999999999866 899999999999999865 99999999999999999999999999875  367


Q ss_pred             eEEEEEE----cCCcceEEEEeC
Q psy8312         127 SVRLTAI----ENGQAKVYLVKV  145 (145)
Q Consensus       127 ~v~~~a~----~~~~~~~~likv  145 (145)
                      ++.|++.    +++++.+|+|||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~irf  103 (122)
T PF00638_consen   81 SLVWTAIDYADEEGKPETYLIRF  103 (122)
T ss_dssp             EEEEEEEECTTSSSEEEEEEEE-
T ss_pred             EEEEEeccccCCCCceEEEEEEE
Confidence            8999776    457899999997

Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....

>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]

Probab=99.96  E-value=6.5e-30  Score=198.41  Aligned_cols=104  Identities=24%  Similarity=0.360  Sum_probs=96.5

Q ss_pred             cccccCceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceE
Q psy8312          42 ACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMV  119 (145)
Q Consensus        42 ~~~~~l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~  119 (145)
                      .+++.|+.|.+.|-||+|.++|.+|||||+|+.+. .|+|||.|.++|++|+.+ +.||+||+|+++|||+||.|.|.|+
T Consensus        72 epvV~l~~v~~ktneedE~vlfK~RaKLfrFd~~akewkERgtGd~~~lkhkktnk~ri~MrRDktlklcaNH~i~Pe~k  151 (211)
T COG5171          72 EPVVELQRVHLKTNEEDETVLFKARAKLFRFDEEAKEWKERGTGDMIILKHKKTNKARITMRRDKTLKLCANHFINPEFK  151 (211)
T ss_pred             HHHHHHHhhhhhccccchhhhhhhhhhheeehHHHHHHHhcCCCcEEEEeccccCceEEEEeechhhhhhhhhccCccee
Confidence            45788999999999999999999999999999987 899999999999999876 9999999999999999999999999


Q ss_pred             EecC--CCCeEEEEEEc-----CCcceEEEEeC
Q psy8312         120 VQKP--SDNSVRLTAIE-----NGQAKVYLVKV  145 (145)
Q Consensus       120 ~~~~--~~k~v~~~a~~-----~~~~~~~likv  145 (145)
                      ++++  ++++|+|++..     +.++++|+|||
T Consensus       152 l~PnvgsdrsWvw~~taD~~Egea~a~tFairF  184 (211)
T COG5171         152 LQPNVGSDRSWVWMSTADTVEGEAKAQTFAIRF  184 (211)
T ss_pred             ccCCCCcccceEEEeecccccCcceeeEEEEee
Confidence            9997  58999999882     35789999997

>KOG0866|consensus

Probab=99.79  E-value=2.9e-20  Score=155.52  Aligned_cols=121  Identities=48%  Similarity=0.775  Sum_probs=109.0

Q ss_pred             CCCCChhHHHHhhhHhhhcccccCceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-----eeE
Q psy8312          24 TRHKSLSEAAREYEEAARACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-----LSR   97 (145)
Q Consensus        24 ~~~~~l~e~a~~~~~~~~~~~~~l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-----~~R   97 (145)
                      .+...|.+++++|+++ ....+.+..||+.+|||+|.++|++.||||.|++.. +|.|||+|.||++...++     ..|
T Consensus       122 ~~~~~l~~~a~~y~~~-~~q~~~~~aVE~~tgee~e~n~~d~~ck~f~f~k~~~sw~e~g~~~lr~n~~as~~~~~~~~r  200 (327)
T KOG0866|consen  122 PRKESLAESAAAYTKA-TAQKCGLSAVEVITGEEDESNKLDMPCKLFAFDKPSQSWVERGRSNLRDNDMASTGDGTTQSR  200 (327)
T ss_pred             chhhhhhhhHHHHhHh-hhhhccceeeeeecCccCccceeccchhhhhccccchhhhhhccccccchhhhhccCCcccce
Confidence            5556777889999776 456778999999999999999999999999999987 899999999999998753     699


Q ss_pred             EEEEecCceeEEEeeeeccceEEecCCCCeEEEEEE--cCCcceEEEEeC
Q psy8312          98 IVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTAI--ENGQAKVYLVKV  145 (145)
Q Consensus        98 ivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~a~--~~~~~~~~likv  145 (145)
                      ++||..+++||++|..||..|..++++.++++++++  ++..++.|||++
T Consensus       201 ~vfrt~~slrv~~n~kv~~~m~~ek~sq~~ir~~a~~~e~~~v~vFl~~~  250 (327)
T KOG0866|consen  201 LVFRTSSSLRVILNTKVWAAMQIEKASQKSIRITAMDTEGQGVKVFLISA  250 (327)
T ss_pred             eEEeccCcceeecchHHHHHHHHhhhcccceeeccccccCCcceEEEeec
Confidence            999999999999999999999999999999999999  556899999875

>KOG0864|consensus

Probab=99.65  E-value=6e-18  Score=135.68  Aligned_cols=102  Identities=25%  Similarity=0.435  Sum_probs=85.4

Q ss_pred             ccccCceeecccccccceeEEEEee-eEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCc-eeEEEeeeeccce
Q psy8312          43 CKRKYEAVAVVTGEEEEVNILQINC-KLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGS-LRVILNTKIWAEM  118 (145)
Q Consensus        43 ~~~~l~~vev~tGEE~E~~vf~~ra-KLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~-~rvllN~~i~~~m  118 (145)
                      +.+.+..+.+.||+++|..+|..++ +||+|+.+. +|++||.|.++|++|+++ ..|++||+|++ ++||.||+|++.|
T Consensus        40 ~~~~~~~~~v~t~e~~e~~~~~~~s~~l~~f~~~~kq~kerG~g~~~~~kn~~~g~~r~~m~rdst~~~v~sn~~~~~~~  119 (215)
T KOG0864|consen   40 PQEELEKVEVKTGEEDEEIIFDQRSEKLYVFDNETKQWKERGTGKVKLLKNKDTGSTRDLMRRDSTKLKVCSNHFIGPSF  119 (215)
T ss_pred             ccccccchhhhccchhhhhhhhhhhhhHHhhhhhhhhhhccCCcceEeeecCCCCcceeeeeecccchhhcccccccCcc
Confidence            3455677999999999999999996 999999887 999999999999999987 67999999999 8999999999999


Q ss_pred             EEecCC--CCeEEEEEE-----cCCcceEEEEe
Q psy8312         119 VVQKPS--DNSVRLTAI-----ENGQAKVYLVK  144 (145)
Q Consensus       119 ~~~~~~--~k~v~~~a~-----~~~~~~~~lik  144 (145)
                      +++++.  ++++.|...     .+.+...|.|+
T Consensus       120 ~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~i~  152 (215)
T KOG0864|consen  120 KLEPPAWEEDSGKWNSLADFSETQPKAEKLAIR  152 (215)
T ss_pred             cccCCcccCcchhhhhhhhhcccccchhHHHHH
Confidence            999973  566666333     23444455444

>KOG2724|consensus

Probab=99.53  E-value=7.3e-15  Score=126.92  Aligned_cols=87  Identities=21%  Similarity=0.367  Sum_probs=78.6

Q ss_pred             cceeEEEEeeeEEEEccCCCceeeeeEEEEeeecCCCeeEEEEEecC-ceeEEEeeeeccceEEecCCCCeEEEEEE---
Q psy8312          58 EEVNILQINCKLFLYDSVKTWIELGRGQLRLNDINNSLSRIVIRVVG-SLRVILNTKIWAEMVVQKPSDNSVRLTAI---  133 (145)
Q Consensus        58 ~E~~vf~~raKLy~f~~~~~WkerG~G~lkl~~~~~~~~RivmR~d~-~~rvllN~~i~~~m~~~~~~~k~v~~~a~---  133 (145)
                      +++.+|+.|||+|++. ++.+.+||||+|||......+..||+|.|. +++|+||..|+++|++++++.+.|+|.|+   
T Consensus       379 edda~ysKkckvfykK-dKEf~dkGvgtl~lkp~~~~k~qlLvradtnlGnilLN~Ll~kgMkctr~gknnvlIvcvp~~  457 (487)
T KOG2724|consen  379 EDDAVYSKKCKVFYKK-DKEFTDKGVGTLHLKPNDRGKFQLLVRADTNLGNILLNSLLNKGMKCTRVGKNNVLIVCVPPS  457 (487)
T ss_pred             CccchhccccceEEEe-cccccccccceeecccccccceeeeehhccchhHHHHHHhhcCCCcceeccCCceEEEEeCCc
Confidence            4578999999999884 458999999999999988789999999985 55799999999999999999999999998   


Q ss_pred             cCCcceEEEEeC
Q psy8312         134 ENGQAKVYLVKV  145 (145)
Q Consensus       134 ~~~~~~~~likv  145 (145)
                      ++..+++|||||
T Consensus       458 e~t~p~TmLIRv  469 (487)
T KOG2724|consen  458 ESTEPATMLIRV  469 (487)
T ss_pred             ccccceeEEEEe
Confidence            578999999997

>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain

Probab=98.93  E-value=1.5e-08  Score=72.65  Aligned_cols=75  Identities=17%  Similarity=0.203  Sum_probs=66.3

Q ss_pred             ceeEEEEeeeEEEEccCC-Cceee--eeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEEEE
Q psy8312          59 EVNILQINCKLFLYDSVK-TWIEL--GRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTAI  133 (145)
Q Consensus        59 E~~vf~~raKLy~f~~~~-~Wker--G~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~a~  133 (145)
                      +.+++..+|.||.+++++ .|..+  |.|.|.+.++... .+||+|+.-+..++++|+.|+++|.+....+++..|...
T Consensus         1 ~~~l~~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~~~~Fh~w~~~   79 (104)
T cd00837           1 EQIISTAVAQVYTADPSTGKWVPASGGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYKGLKYTQATPFFHQWEDD   79 (104)
T ss_pred             CceEEEEEEEEEEECCCCCceEECCCCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecCCcEEeecCCeEEEEEcC
Confidence            357899999999998876 99999  9999999998754 799999999999999999999999999887777777643

EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events

Probab=98.24  E-value=2.2e-05  Score=56.62  Aligned_cols=74  Identities=14%  Similarity=0.152  Sum_probs=63.6

Q ss_pred             eeEEEEeeeEEEEccCC--Ccee-eeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEEEE
Q psy8312          60 VNILQINCKLFLYDSVK--TWIE-LGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTAI  133 (145)
Q Consensus        60 ~~vf~~raKLy~f~~~~--~Wke-rG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~a~  133 (145)
                      .++..++|.||..++.+  +|.- .|.|.+.+.++... .+||.++.-+..++++|+.|+++|.+.+..+....|...
T Consensus         9 ~~i~~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~~~~Fh~f~~~   86 (111)
T PF00568_consen    9 QSIATAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPGFVYTKARPFFHQFEDD   86 (111)
T ss_dssp             EEEEEEEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT-EEEEESSSEEEEEET
T ss_pred             eEEEEEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCCCEEEeCCCcEEEEEeC
Confidence            68999999999998766  4999 99999999887654 799999997799999999999999999987777777643

This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....

>cd01206 Homer Homer type EVH1 domain

Probab=98.17  E-value=7.3e-06  Score=59.82  Aligned_cols=71  Identities=20%  Similarity=0.285  Sum_probs=57.5

Q ss_pred             ceeEEEEeeeEEEEccCC--CceeeeeEEEEee--ecCC-CeeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEE
Q psy8312          59 EVNILQINCKLFLYDSVK--TWIELGRGQLRLN--DINN-SLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLT  131 (145)
Q Consensus        59 E~~vf~~raKLy~f~~~~--~WkerG~G~lkl~--~~~~-~~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~  131 (145)
                      |..||+.||.+|.||+.+  .|.--|-+.++|.  .+.. .-+|||-+.+  .++|+|+.|.++|++.++..++=.|.
T Consensus         3 E~~I~~arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~~~~--~~~iINc~i~~~~~y~kas~~FhQWr   78 (111)
T cd01206           3 EQPIFSTRAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIISVGG--TKAIINSTITPNMTFTKTSQKFGQWA   78 (111)
T ss_pred             ccccceeeeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEEecC--cEEEEeccccCCcceeeccccccccc
Confidence            678999999999999963  8998887765553  3433 3899999876  49999999999999999877765553

Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain

Probab=98.12  E-value=2.5e-05  Score=57.21  Aligned_cols=74  Identities=19%  Similarity=0.349  Sum_probs=62.1

Q ss_pred             ceeEEEEeeeEEEEccCC-CceeeeeE-----EEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEE
Q psy8312          59 EVNILQINCKLFLYDSVK-TWIELGRG-----QLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLT  131 (145)
Q Consensus        59 E~~vf~~raKLy~f~~~~-~WkerG~G-----~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~  131 (145)
                      |..||+.||.+|.+|..+ .|.--|-|     .+.|..+... .+||+-|+..-.++++|+.|+++|.+.+....+-.|.
T Consensus         1 e~~i~~~rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k~~p~Fh~w~   80 (111)
T cd01207           1 EQSICQARASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPRNNTFRVVGRKLQDHQVVINCAIVKGLKYNQATPTFHQWR   80 (111)
T ss_pred             CCceEEEEEEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCCCCEEEEEEeecCCCcEEEEEEecCCceeeecCCcceeee
Confidence            567999999999999887 89987774     6777776543 8999999977789999999999999999877776665


Q ss_pred             E
Q psy8312         132 A  132 (145)
Q Consensus       132 a  132 (145)
                      .
T Consensus        81 ~   81 (111)
T cd01207          81 D   81 (111)
T ss_pred             c
Confidence            3

Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

>smart00461 WH1 WASP homology region 1

Probab=96.93  E-value=0.012  Score=42.16  Aligned_cols=72  Identities=21%  Similarity=0.286  Sum_probs=57.5

Q ss_pred             ceeEEEEeeeEEEEccCC-CceeeeeE-EEEeeecCCC---eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEE
Q psy8312          59 EVNILQINCKLFLYDSVK-TWIELGRG-QLRLNDINNS---LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLT  131 (145)
Q Consensus        59 E~~vf~~raKLy~f~~~~-~WkerG~G-~lkl~~~~~~---~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~  131 (145)
                      |.+++..+|-+..++... .|.-.|.| .+.+......   -.||+-+..+. ++++|+.|+++|.+.+.....-.|.
T Consensus         3 ~~~~~~~~avV~~y~~~~~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~-~vv~e~ely~~~~y~~~~~~Fh~f~   79 (106)
T smart00461        3 SQCIILARAVVQLYDADTKKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQD-KVIWNQELYKNFKYNQATPTFHQWA   79 (106)
T ss_pred             CCCEEEEEEEEEEEeCCCCCeEECCCCCEEEEEEEecCCeEEEEEEEecCCC-eEEEEEeccCCCEEeecCCceEEEE
Confidence            557888888888888765 89999999 7777664332   68999888655 8999999999999998776666654

Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.67  E-value=0.38  Score=45.66  Aligned_cols=87  Identities=16%  Similarity=0.210  Sum_probs=63.8

Q ss_pred             ccceeEEEEeeeEEEEccCC-CceeeeeEE-EEeeecCCCeeEEEEEecCceeEEEeeeeccceEEecCC-CCeEEEEEE
Q psy8312          57 EEEVNILQINCKLFLYDSVK-TWIELGRGQ-LRLNDINNSLSRIVIRVVGSLRVILNTKIWAEMVVQKPS-DNSVRLTAI  133 (145)
Q Consensus        57 E~E~~vf~~raKLy~f~~~~-~WkerG~G~-lkl~~~~~~~~RivmR~d~~~rvllN~~i~~~m~~~~~~-~k~v~~~a~  133 (145)
                      +....++...|+||.|+..+ .|.-.+-.. ++|.+..  +.-..+...+..+.+|++.|.+.|++.-.. -.++.|...
T Consensus       245 ~~~~~~~~~~~~L~l~d~~~~~f~lq~~~v~~~i~~~~--~~~y~l~i~~~~~~~l~~~v~s~mNp~F~~e~lSFiFN~~  322 (794)
T PF08553_consen  245 EAGEILASESAELYLYDPPTGKFVLQDSSVTAKIIETG--KWEYWLQIEGKDKIWLGQPVSSDMNPVFNFEHLSFIFNYY  322 (794)
T ss_pred             CccceeeeeeEEEEEEcCCCceEEEecCcEEEEEEEcC--CeEEEEEEecCCceEEeeeccCCcCeEEEcceeEEEEEeE
Confidence            44448999999999999877 788775332 5555443  334445555566788999999999987653 467888887


Q ss_pred             -cCCcceEEEEeC
Q psy8312         134 -ENGQAKVYLVKV  145 (145)
Q Consensus       134 -~~~~~~~~likv  145 (145)
                       .+|..-+|||||
T Consensus       323 ~~~~~~~sw~lkF  335 (794)
T PF08553_consen  323 TEDGSAYSWLLKF  335 (794)
T ss_pred             cCCCceEEEEEEe
Confidence             567999999997

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping

Probab=84.07  E-value=11  Score=27.62  Aligned_cols=68  Identities=12%  Similarity=0.138  Sum_probs=42.2

Q ss_pred             eEEE-EeeeEEEEccCC-Cceeeee-EEEEeeecC-CCeeE-EEEEecCceeEEEeeeeccceEEecCCCCeEEEE
Q psy8312          61 NILQ-INCKLFLYDSVK-TWIELGR-GQLRLNDIN-NSLSR-IVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLT  131 (145)
Q Consensus        61 ~vf~-~raKLy~f~~~~-~WkerG~-G~lkl~~~~-~~~~R-ivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~  131 (145)
                      .+.. ..|-||.|+..+ +|...|+ |.|.|-+.. ...++ +||-+.++..+++.  |.+.+.++.. +..+.+.
T Consensus        22 Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~~p~~~~~vlNR~~~~n~~~~--i~~~~~~e~~-~~~l~~r   94 (122)
T PF06058_consen   22 ILDTASHVVVYKFDHETNEWEKTDIEGTLFVYKRSSSPRYGLIVLNRRSTENFVEP--ITPDLDFELQ-DPYLIYR   94 (122)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEETTS-ECEEEEESSSS--EEEE--E-SGGGEEEE-TTEEEEE
T ss_pred             HHhhCCeEEEEeecCCCCcEeecCcEeeEEEEEeecccceEEEEecCCCCCceeee--cCCCcEEEEe-CCEEEEE
Confidence            3343 479999999877 8999997 788876533 33455 44444545555555  7788887754 5555554

In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.

---

Homologous Structure Templates

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
2crf_A	150	RAN binding protein 3; RAN_BP1 domain, ranbp3, str	5e-24
2y8g_A	138	Ranbp3-B, RAN-binding protein 3; protein transport	6e-24
3n7c_A	130	ABR034WP; nuclear pore complex, NUP2, RAN-binding	2e-21
1rrp_B	134	Nuclear pore complex protein NUP358; complex (smal	6e-16
1xke_A	130	RAN-binding protein 2; beta barrel, pleckstrin-hom	1e-15
3m1i_B	191	RAN-specific GTPase-activating protein 1; heat rep	8e-15
2ec1_A	125	Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass	1e-14
1k5d_B	201	RAN-specific GTPase-activating protein; ranbp1, ra	2e-13

>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 150

 Score = 90.1 bits (223), Expect = 5e-24
 Identities = 53/117 (45%), Positives = 76/117 (64%), Gaps = 8/117 (6%)

Query: 37  EEAARACKRKYEAVAVVTGEEEEVNILQINCKLFLYD-SVKTWIELGRGQLRLND----- 90
             +  A K   E V V+TGEE E N+LQ+ CKLF++D + ++W+E GRG LRLND     
Sbjct: 4   GSSGTARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTD 63

Query: 91  INNSLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTAI--ENGQAKVYLVKV 145
                SR+V+R  GSLR+ILNTK+WA+M + K S+ S+ +TA+  E+   KV+L+  
Sbjct: 64  DGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQGVKVFLISA 120

>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Length = 138

 Score = 89.3 bits (221), Expect = 6e-24
 Identities = 50/106 (47%), Positives = 72/106 (67%), Gaps = 8/106 (7%)

Query: 48  EAVAVVTGEEEEVNILQINCKLFLYDSV-KTWIELGRGQLRLN-----DINNSLSRIVIR 101
             V V+TGEE E N+LQ+ CKLF++D   ++W+ +GRG LRLN     D     SR+V+R
Sbjct: 3   MKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMR 62

Query: 102 VVGSLRVILNTKIWAEMVVQKPSDNSVRLTAI--ENGQAKVYLVKV 145
             GSLR+ILNTK+WA+M + K S+ S+R+TA+  E+   KV+L+  
Sbjct: 63  TQGSLRLILNTKLWAQMQIDKASEKSIRITAMDTEDQGVKVFLISA 108

>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Length = 130

 Score = 82.7 bits (204), Expect = 2e-21
 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 6/102 (5%)

Query: 50  VAVVTGEEEEVNILQINCKLFLYDS-VKTWIELGRGQLRLND--INNSLSRIVIRVVGSL 106
           +++  GEE E  +     KL ++DS  K +   G G+L+L     +    R++ R  G  
Sbjct: 1   MSLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGMG 60

Query: 107 RVILNTKIWAEMVVQKPSDNS---VRLTAIENGQAKVYLVKV 145
            V+LNT +      Q    ++   ++   I +G+ + +++KV
Sbjct: 61  HVLLNTSVVKSFKYQPIDADNENLIKWPIITDGKLETFIIKV 102

>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Length = 134

 Score = 68.5 bits (167), Expect = 6e-16
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 48  EAVAVVTGEEEEVNILQINCKLFLYDSV-KTWIELGRGQLRLN-DINNSLSRIVIRVVGS 105
           + + V TGEE+E        KLF +D   K W E G G +++     +   R+++R    
Sbjct: 10  DKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQV 69

Query: 106 LRVILNTKIWAEMVVQ--KPSDNSVRLTAI----ENGQAKVYLVKV 145
           L++  N  I  +M +     SD S    A+    E  + +   ++ 
Sbjct: 70  LKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRF 115

>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 130

 Score = 67.7 bits (165), Expect = 1e-15
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 8/100 (8%)

Query: 54  TGEEEEVNILQINCKLFLYD-SVKTWIELGRGQLRLN-DINNSLSRIVIRVVGSLRVILN 111
           +GEE+E  +     KLF +D  V  W E G G L++  +  N   R+++R    L+V  N
Sbjct: 2   SGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCAN 61

Query: 112 TKIWAEMVVQK--PSDNSVRLTAI----ENGQAKVYLVKV 145
             I   M ++    SD +    A      + + +    K 
Sbjct: 62  HWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKF 101

>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} Length = 191

 Score = 67.1 bits (163), Expect = 8e-15
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 17/153 (11%)

Query: 2   SQNPSETFDEPDSDSGGEDNGTTRHKSLSEAAREYEEAARACKRKYEAVAVVTGEEEEVN 61
           ++ P    DE D+    +  G        + A E  +         E V V T EE+E  
Sbjct: 24  AEKPETKKDEEDTKEETKKEG--------DDAPESPDIHFEPVVHLEKVDVKTMEEDEEV 75

Query: 62  ILQINCKLFLYDS-VKTWIELGRGQLRLN-DINNSLSRIVIRVVGSLRVILNTKIWAEMV 119
           + ++  KLF +D+  K W E G G  +   +   +  RI++R   +L++  N  I  E  
Sbjct: 76  LYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYT 135

Query: 120 VQKPSDNSVRL-------TAIENGQAKVYLVKV 145
           ++    +            A    +A  + ++ 
Sbjct: 136 LKPNVGSDRSWVYACTADIAEGEAEAFTFAIRF 168

>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 125

 Score = 64.9 bits (158), Expect = 1e-14
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 49  AVAVVTGE-EEEVNILQINCKLFLYDSVKTWIELGRGQLRLNDINNSLSRIVIRVVGSLR 107
             +  +GE +EE       CKLF       + E G G L L    N  +++++R   +L 
Sbjct: 1   GSSGSSGEVKEEDAFYSKKCKLFYKKD-NEFKEKGIGTLHLKPTANQKTQLLVRADTNLG 59

Query: 108 -VILNTKIWAEMVVQKPSDNSVRLTAIENGQA 138
            ++LN  I   M   +   N+V +  + N   
Sbjct: 60  NILLNVLIPPNMPCTRTGKNNVLIVCVPNPPI 91

>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B* Length = 201

 Score = 63.7 bits (154), Expect = 2e-13
 Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 11/141 (7%)

Query: 16  SGGEDNGTTRHKSLSEAAREYEEAARACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSV 75
           +  +D       S         +             + T EE+E  + ++  KLF + S 
Sbjct: 2   AAAKDTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASE 61

Query: 76  KT---WIELGRGQLRLN-DINNSLSRIVIRVVGSLRVILNTKIWAEMVVQK--PSDNSVR 129
                W E G G ++L         R+++R   +L++  N  I   M ++    SD +  
Sbjct: 62  NDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWV 121

Query: 130 LTAI-----ENGQAKVYLVKV 145
                    E  + ++  ++ 
Sbjct: 122 WNTHADFADECPKPELLAIRF 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
3m1i_B	191	RAN-specific GTPase-activating protein 1; heat rep	100.0
2crf_A	150	RAN binding protein 3; RAN_BP1 domain, ranbp3, str	100.0
2y8g_A	138	Ranbp3-B, RAN-binding protein 3; protein transport	100.0
1rrp_B	134	Nuclear pore complex protein NUP358; complex (smal	100.0
4hat_B	140	RAN-specific GTPase-activating protein 1; heat rep	100.0
1k5d_B	201	RAN-specific GTPase-activating protein; ranbp1, ra	100.0
3n7c_A	130	ABR034WP; nuclear pore complex, NUP2, RAN-binding	100.0
1xke_A	130	RAN-binding protein 2; beta barrel, pleckstrin-hom	100.0
2ec1_A	125	Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass	100.0
1qc6_A	130	EVH1 domain from ENA/VAsp-like protein; AN incompl	99.34
1ddw_A	120	GLGF-domain protein homer; pleckstrin homology dom	98.85
1i2h_A	168	PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology	98.62
1evh_A	112	WH1 domain, protein (MENA EVH1 domain); molecular	98.51
1egx_A	115	VAsp, vasodilator-stimulated phosphoprotein; EVH1,	98.48
1xod_A	118	Spred1; sprouty, EVH1, peptide-binding, signaling	98.2
2jp2_A	126	Spred-2, sprouty-related, EVH1 domain-containing p	98.13
3syx_A	130	Sprouty-related, EVH1 domain-containing protein 1;	97.4
1mke_A	152	WIP - N-WAsp, fusion protein consisting of wiskott	94.09
2ifs_A	169	N-WAsp, wiskott-aldrich syndrome protien ineractin	93.85

>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-37  Score=241.77  Aligned_cols=106  Identities=25%  Similarity=0.349  Sum_probs=91.5

Q ss_pred             hhcccccCceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccc
Q psy8312          40 ARACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAE  117 (145)
Q Consensus        40 ~~~~~~~l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~  117 (145)
                      ...|++.|++|++.||||+|++||++|||||+|+++. +|+|||+|.||||+|+++ ++|||||+|+++||||||+|+++
T Consensus        54 ~f~Pvv~L~~vev~tGEEdEe~lf~~RaKLf~f~~~~~~WKERGvG~lkilk~ket~k~RllMR~d~~~kV~LN~~I~~~  133 (191)
T 3m1i_B           54 HFEPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPE  133 (191)
T ss_dssp             -------CCCCCCCCSCTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTT
T ss_pred             CcccceecccccccCCCcceeeeeEEeeEEEEEecCCCCccceeEEEEEEEEcCCCCeEEEEEEecCcceEEEeeecCCC
Confidence            3566777899999999999999999999999999765 899999999999999875 99999999999999999999999


Q ss_pred             eEEecC--CCCeEEEEEE---cCC--cceEEEEeC
Q psy8312         118 MVVQKP--SDNSVRLTAI---ENG--QAKVYLVKV  145 (145)
Q Consensus       118 m~~~~~--~~k~v~~~a~---~~~--~~~~~likv  145 (145)
                      |++++.  ++++|+|+|.   .+|  ++++|+|||
T Consensus       134 m~~~~~~~sdks~v~~~~~D~sdge~k~e~~aIRF  168 (191)
T 3m1i_B          134 YTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRF  168 (191)
T ss_dssp             CCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEEC
T ss_pred             cEEeECCCCCceEEEEecCcCCCCCcceEEEEEEE
Confidence            999987  4689999974   344  589999998

>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3

Probab=100.00  E-value=4.2e-37  Score=233.32  Aligned_cols=105  Identities=50%  Similarity=0.869  Sum_probs=97.5

Q ss_pred             hcccccCceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCC-----CeeEEEEEecCceeEEEeeee
Q psy8312          41 RACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINN-----SLSRIVIRVVGSLRVILNTKI  114 (145)
Q Consensus        41 ~~~~~~l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~-----~~~RivmR~d~~~rvllN~~i  114 (145)
                      .++++.|++|++.||||+|++||++|||||+|++++ +|+|||+|+||||+++.     .++|||||+|+++||||||+|
T Consensus         8 ~~~~~~l~~vev~tGEE~E~~l~~~raKL~~fd~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i   87 (150)
T 2crf_A            8 TARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKL   87 (150)
T ss_dssp             SSCCSCSSCTTTSCCCCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEEC
T ss_pred             CccccCcccccccCCCcCeEEEEEEEeEEEEEcCCCCCcccceeEEEEEEeccccCCCCccEEEEEEEcCcceEEeeeec
Confidence            366888999999999999999999999999998766 89999999999999862     389999999999999999999


Q ss_pred             ccceEEecCCCCeEEEEEE--cCCcceEEEEeC
Q psy8312         115 WAEMVVQKPSDNSVRLTAI--ENGQAKVYLVKV  145 (145)
Q Consensus       115 ~~~m~~~~~~~k~v~~~a~--~~~~~~~~likv  145 (145)
                      +++|++++.++++|+|+|+  +++.+++|+|||
T Consensus        88 ~~~m~~~~~~~k~~~~~~~d~~d~~~~~~lirf  120 (150)
T 2crf_A           88 WAQMQIDKASEKSIHITAMDTEDQGVKVFLISA  120 (150)
T ss_dssp             CTTCCEECCSSSEEEEEEEBSSSCCEEEEEEEC
T ss_pred             cCCceeecCCCCEEEEEeecCCCCceEEEEEEE
Confidence            9999999888999999999  467899999997

>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A

Probab=100.00  E-value=3.9e-37  Score=230.58  Aligned_cols=99  Identities=51%  Similarity=0.915  Sum_probs=81.0

Q ss_pred             CceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCC-----CeeEEEEEecCceeEEEeeeeccceEE
Q psy8312          47 YEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINN-----SLSRIVIRVVGSLRVILNTKIWAEMVV  120 (145)
Q Consensus        47 l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~-----~~~RivmR~d~~~rvllN~~i~~~m~~  120 (145)
                      |++|++.||||+|++||++|||||+|++++ +|+|||+|.||||+|++     .++|||||+|+++||||||+|+++|++
T Consensus         2 l~~v~v~tGEE~E~~~~~~raKL~~f~~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~   81 (138)
T 2y8g_A            2 AMKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQI   81 (138)
T ss_dssp             ------------CEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECTTTCCEEEEEEEEETTTCCEEEEEECCTTCCE
T ss_pred             CCcccccCCCcCcEEEEEEEeEEEEEecCCCCchhceEEEEEEEEeccCCCCCccEEEEEEEcCcceEEEeeEecCCcee
Confidence            688999999999999999999999999865 89999999999999873     389999999999999999999999999


Q ss_pred             ecCCCCeEEEEEE--cCCcceEEEEeC
Q psy8312         121 QKPSDNSVRLTAI--ENGQAKVYLVKV  145 (145)
Q Consensus       121 ~~~~~k~v~~~a~--~~~~~~~~likv  145 (145)
                      ++.++|+|+|+|+  +++.+++|+|||
T Consensus        82 ~~~~~k~~~~~~~d~~d~~~~~~lirf  108 (138)
T 2y8g_A           82 DKASEKSIRITAMDTEDQGVKVFLISA  108 (138)
T ss_dssp             EEEETTEEEEECCC--CCCCCEEEEEC
T ss_pred             ecCCCCEEEEEEecCCCCceEEEEEEE
Confidence            9888999999999  467899999997

>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3

Probab=100.00  E-value=3.3e-36  Score=224.19  Aligned_cols=104  Identities=25%  Similarity=0.348  Sum_probs=94.6

Q ss_pred             cccccCceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceE
Q psy8312          42 ACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMV  119 (145)
Q Consensus        42 ~~~~~l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~  119 (145)
                      |.+.++++|++.||||+|++||++|||||+|++++ +|+|||+|.||||+|+++ ++|||||+|+++||||||+|+++|+
T Consensus         4 pi~~l~~~vev~tGEE~E~~lf~~raKL~~~~~~~~~WkerG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~   83 (134)
T 1rrp_B            4 PVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMK   83 (134)
T ss_dssp             CSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSSCC
T ss_pred             cceECCceEeecCCCcCeEEEEEEEEEEEEEcccCCCcccCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecCCce
Confidence            55555679999999999999999999999998766 899999999999999865 9999999999999999999999999


Q ss_pred             EecC--CCCeEEEEEE----cCCcceEEEEeC
Q psy8312         120 VQKP--SDNSVRLTAI----ENGQAKVYLVKV  145 (145)
Q Consensus       120 ~~~~--~~k~v~~~a~----~~~~~~~~likv  145 (145)
                      ++++  ++++|+|+++    +++++++|+|||
T Consensus        84 ~~~~~~s~~~~~~~~~d~~d~~~k~~~~~irf  115 (134)
T 1rrp_B           84 LTPNAGSDRSFVWHALDYADELPKPEQLAIRF  115 (134)
T ss_dssp             CBCSTTCTTEEEEEEEECTTSSCEEEEEEEEC
T ss_pred             EeecCCCCeEEEEEcccccCCCCceEEEEEEE
Confidence            9986  4789999998    256899999997

>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*

Probab=100.00  E-value=2.2e-36  Score=227.18  Aligned_cols=104  Identities=26%  Similarity=0.365  Sum_probs=82.1

Q ss_pred             cccccCceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceE
Q psy8312          42 ACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMV  119 (145)
Q Consensus        42 ~~~~~l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~  119 (145)
                      .|++.|++|++.||||+|+++|++|||||+|++++ +|+|||+|.||||+|+++ ++|||||+|+++||||||+|+++|+
T Consensus         5 ~pvv~l~~vev~tGEE~E~~lf~~raKLf~f~~~~~~WkerG~G~lkilk~k~~~k~RllmR~d~~~kv~lN~~i~~~m~   84 (140)
T 4hat_B            5 EPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYT   84 (140)
T ss_dssp             --------------CTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTTCC
T ss_pred             cceeEcceecccCCCcCeeEEEEEeEEEEEEcCCCCCcccccEEEEEEEEcCCCCeEEEEEEecCcceEEEEeEecCCeE
Confidence            45666799999999999999999999999999765 899999999999999876 9999999999999999999999999


Q ss_pred             EecC--CCCeEEEEEE---cCC--cceEEEEeC
Q psy8312         120 VQKP--SDNSVRLTAI---ENG--QAKVYLVKV  145 (145)
Q Consensus       120 ~~~~--~~k~v~~~a~---~~~--~~~~~likv  145 (145)
                      +++.  ++++|+|++.   .+|  ++++|+|||
T Consensus        85 ~~~~~~s~k~~v~~~~~D~sdg~~~~~~~~iRf  117 (140)
T 4hat_B           85 LKPNVGSDRSWVYACTADIAEGEAEAFTFAIRF  117 (140)
T ss_dssp             CBCCTTCSSEEEEEEEEECTTSSCEEEEEEEEE
T ss_pred             EeEcCCCCceEEEEccccCCCCCCceEEEEEEE
Confidence            9987  4689999864   344  689999997

>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*

Probab=100.00  E-value=1.7e-35  Score=233.86  Aligned_cols=105  Identities=19%  Similarity=0.277  Sum_probs=94.0

Q ss_pred             hcccccCceeecccccccceeEEEEeeeEEEE--ccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeecc
Q psy8312          41 RACKRKYEAVAVVTGEEEEVNILQINCKLFLY--DSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWA  116 (145)
Q Consensus        41 ~~~~~~l~~vev~tGEE~E~~vf~~raKLy~f--~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~  116 (145)
                      ..|++.|+++++.||||+|++||++|||||+|  +++. +|+|||+|.||||+|+++ ++|||||+|+++||||||+|++
T Consensus        27 f~Piv~L~~vev~TGEEdEe~lf~~RaKLf~f~~d~~~~~WKERGvG~lkIlk~k~t~k~RlvMR~d~~~kV~LN~~I~~  106 (201)
T 1k5d_B           27 FEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITP  106 (201)
T ss_dssp             CCCSCCCCCCCCCCSCSSCCCSEEEEEEEEEECCTTSSCCEEEEEEEEEEEEECSSSCCEEEEEEETTTCCEEEEEECCS
T ss_pred             cccccccccccccCCCccceEEEEEeeeEEEecccccCCCccccceEEEEEEEcCCCCcEEEEEEECCcceEEEeeEecC
Confidence            35577899999999999999999999999999  5444 899999999999999865 9999999999999999999999


Q ss_pred             ceEEecC--CCCeEEEEEE---c--CCcceEEEEeC
Q psy8312         117 EMVVQKP--SDNSVRLTAI---E--NGQAKVYLVKV  145 (145)
Q Consensus       117 ~m~~~~~--~~k~v~~~a~---~--~~~~~~~likv  145 (145)
                      +|++.++  ++++|+|+++   .  +.++++|+|||
T Consensus       107 ~m~~~~~~~s~ks~v~~~~~d~ad~~~k~e~~~iRf  142 (201)
T 1k5d_B          107 MMELKPNAGSDRAWVWNTHADFADECPKPELLAIRF  142 (201)
T ss_dssp             SCCCCBCSSCSSEEEEEEEEECTTSSCEEEEEEEEC
T ss_pred             CceeeecCCCCceEEEEeccccCCCCCceEEEEEEE
Confidence            9999986  5789999873   3  35789999998

>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A

Probab=100.00  E-value=4.3e-35  Score=217.65  Aligned_cols=96  Identities=26%  Similarity=0.446  Sum_probs=77.4

Q ss_pred             eecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCC-C-eeEEEEEecCceeEEEeeeeccceEEecCC--
Q psy8312          50 VAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINN-S-LSRIVIRVVGSLRVILNTKIWAEMVVQKPS--  124 (145)
Q Consensus        50 vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~-~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~--  124 (145)
                      |+++||||+|++||++|||||+|++++ +|+|||+|+||||++++ + ++|||||+|+++|||||++|+++|++++.+  
T Consensus         1 iev~tGEE~E~~lf~~raKL~~f~~~~~~WkerG~G~lkil~~k~~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~~   80 (130)
T 3n7c_A            1 MSLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGMGHVLLNTSVVKSFKYQPIDAD   80 (130)
T ss_dssp             ---------CEEEEEEEEEEEEECC---CEEEEEEEEEEEEEETTEEEEEEEEEEC-CCCCEEEEEECCTTBCCEESCTT
T ss_pred             CcccCCCcCeeEEEEEEEEEEEEeCCCCCchhcceEEEEEEEecCCCCEEEEEEEecCCceEEeeccccCCcEEeEcCCC
Confidence            689999999999999999999999876 89999999999999984 4 899999999999999999999999999874  


Q ss_pred             -CCeEEEEEEcCCcceEEEEeC
Q psy8312         125 -DNSVRLTAIENGQAKVYLVKV  145 (145)
Q Consensus       125 -~k~v~~~a~~~~~~~~~likv  145 (145)
                       .+.|.|+++++|++++|+|||
T Consensus        81 ~~~~v~~~~~~dgk~~~~~lrf  102 (130)
T 3n7c_A           81 NENLIKWPIITDGKLETFIIKV  102 (130)
T ss_dssp             CTTEEEEEEEETTEEEEEEEEC
T ss_pred             CccEEEEEecCCCceEEEEEEE
Confidence             355777777889999999998

>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3

Probab=100.00  E-value=1.9e-34  Score=213.78  Aligned_cols=93  Identities=26%  Similarity=0.318  Sum_probs=85.3

Q ss_pred             ccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecC--CCCeE
Q psy8312          53 VTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKP--SDNSV  128 (145)
Q Consensus        53 ~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~--~~k~v  128 (145)
                      .||||+|++||++|||||+|++++ +|+|||+|.||||+|+++ ++|||||+|+++||||||+|+++|+++++  ++++|
T Consensus         1 gtGEE~E~~l~~~raKL~~~~~~~~~WkERG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~   80 (130)
T 1xke_A            1 GSGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAW   80 (130)
T ss_dssp             CCSSSCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTTSCEEECTTCSSCE
T ss_pred             CCCCcceEEEEEEEEEEEEEcCCCCCcccCcEEEEEEEEcCCCCeEEEEEEEcCCCeEEEecEeCCCcEEeecCCCCeEE
Confidence            389999999999999999999765 899999999999999865 99999999999999999999999999986  57899


Q ss_pred             EEEEE----cCCcceEEEEeC
Q psy8312         129 RLTAI----ENGQAKVYLVKV  145 (145)
Q Consensus       129 ~~~a~----~~~~~~~~likv  145 (145)
                      +|++.    +++++++|+|||
T Consensus        81 ~~~~~d~~d~~~~~~~~~irf  101 (130)
T 1xke_A           81 MWLASDFSDGDAKLEQLAAKF  101 (130)
T ss_dssp             EEEEEECSSSCSEEEEEEEEC
T ss_pred             EEEecccCCCCCceEEEEEEE
Confidence            99986    246899999997

>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=8.4e-33  Score=203.98  Aligned_cols=94  Identities=22%  Similarity=0.350  Sum_probs=79.8

Q ss_pred             ecccccccceeEEEEeeeEEEEccCCCceeeeeEEEEeeecCCCeeEEEEEecCc-eeEEEeeeeccceEEecCCCCeEE
Q psy8312          51 AVVTGEEEEVNILQINCKLFLYDSVKTWIELGRGQLRLNDINNSLSRIVIRVVGS-LRVILNTKIWAEMVVQKPSDNSVR  129 (145)
Q Consensus        51 ev~tGEE~E~~vf~~raKLy~f~~~~~WkerG~G~lkl~~~~~~~~RivmR~d~~-~rvllN~~i~~~m~~~~~~~k~v~  129 (145)
                      ...||||+|++||++|||||+|+.. +|+|||+|+||||++++.++|||||+|++ +||||||+|+++|++++++++.+.
T Consensus         4 ~~~tgEE~E~~lf~~raKLf~~~~~-~WkERGvG~lki~~~k~~k~RllmR~d~~~~kv~lN~~i~~~m~~~~~g~~~~~   82 (125)
T 2ec1_A            4 GSSGEVKEEDAFYSKKCKLFYKKDN-EFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVL   82 (125)
T ss_dssp             ----CCCCCSCSEEEEEEEEEECSS-SEEEEEEEEEEEEECSSSSEEEEEEESSSSCCBSCCEECCSSCCEECCTTTEEE
T ss_pred             CCcCCccCceeEEEEeeEEEEecCC-CcccccEEEEEeeecCCCcEEEEEEecCCCCEEEEeeEEcCCCeEEecCCCcEE
Confidence            4579999999999999999999664 89999999999999987799999999996 799999999999999998655555


Q ss_pred             EEEE--c--CCc----ceEEEEeC
Q psy8312         130 LTAI--E--NGQ----AKVYLVKV  145 (145)
Q Consensus       130 ~~a~--~--~~~----~~~~likv  145 (145)
                      +.++  +  +++    +++|+|||
T Consensus        83 ~~~~~~~~~d~~~~~~~~~~~lrf  106 (125)
T 2ec1_A           83 IVCVPNPPIDEKNATMPVTMLIRV  106 (125)
T ss_dssp             EEECCSSCSCSSSSSSCEEEEEEC
T ss_pred             EEEccCCcccCCCCCceEEEEEEE
Confidence            5455  3  554    89999997

>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4

Probab=99.34  E-value=5.8e-12  Score=92.79  Aligned_cols=74  Identities=18%  Similarity=0.309  Sum_probs=64.5

Q ss_pred             cceeEEEEeeeEEEEccCC-CceeeeeE-----EEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEE
Q psy8312          58 EEVNILQINCKLFLYDSVK-TWIELGRG-----QLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRL  130 (145)
Q Consensus        58 ~E~~vf~~raKLy~f~~~~-~WkerG~G-----~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~  130 (145)
                      .|.+||++||+||.++.+. .|..+|.|     .++|+++..+ .+||++|+.+..++|+|+.|+++|.+.+....+..|
T Consensus         2 ~E~~i~~~~A~V~~~d~~~~~W~~~g~G~~~l~~V~i~~~~~~~~~Riv~~~~~~~~vi~n~~i~~~~~y~~~~~~Fh~w   81 (130)
T 1qc6_A            2 SEQSICQARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQVVINYSIVKGLKYNQATPTFHQW   81 (130)
T ss_dssp             CCEEEEEEEEEEEEEETTTTEEEECC-----CEEEEEEEETTTTEEEEEEECTTTCCEEEEEECCTTCEEEEEETTEEEE
T ss_pred             CceeEEEEEEEEEEECCCCCceeECCCCceeeeEEEEEecCCCcEEEEEEEeCCCCeEEEeeEEeCCcEEeccCCeeEEE
Confidence            3789999999999999876 89999998     7888887755 899999998899999999999999999887888877


Q ss_pred             E
Q psy8312         131 T  131 (145)
Q Consensus       131 ~  131 (145)
                      .
T Consensus        82 ~   82 (130)
T 1qc6_A           82 R   82 (130)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*

Probab=98.85  E-value=5.1e-08  Score=71.00  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=59.9

Q ss_pred             cceeEEEEeeeEEEEccCC--CceeeeeEE--EEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEE
Q psy8312          58 EEVNILQINCKLFLYDSVK--TWIELGRGQ--LRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLT  131 (145)
Q Consensus        58 ~E~~vf~~raKLy~f~~~~--~WkerG~G~--lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~  131 (145)
                      .|.+||..||.||.+|+.+  .|...|.|.  +.|.++... .+||+.+++  .++++|+.|.++|.+.++..++..|.
T Consensus         2 ~E~~i~~~rA~V~~~D~~tk~~W~p~g~~~~~V~~~~d~~~~~yRIv~~~~--~~vv~n~~i~~~l~y~~a~p~FhqW~   78 (120)
T 1ddw_A            2 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDG--SKAIINSTITPNMTFTKTSQKFGQWA   78 (120)
T ss_dssp             CEEEEEEEEEEEEEECTTTSCSEEESCSSCEEEEEEEETTTTEEEEEEEET--TEEEEEEECCTTCCCEECSSSEEEEE
T ss_pred             CceEEEEEEEEEEEEcCCCCCceEeCCCCceEEEEEEcCCCCEEEEEEccC--CEEEEeCEecCCcEEeeCCccccEEE
Confidence            4789999999999998854  899955544  446665543 799999885  69999999999999999989998887

>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4

Probab=98.62  E-value=2.4e-07  Score=71.12  Aligned_cols=73  Identities=18%  Similarity=0.231  Sum_probs=60.3

Q ss_pred             cceeEEEEeeeEEEEccCC--CceeeeeEEEE--eeecCCC-eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEEE
Q psy8312          58 EEVNILQINCKLFLYDSVK--TWIELGRGQLR--LNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTA  132 (145)
Q Consensus        58 ~E~~vf~~raKLy~f~~~~--~WkerG~G~lk--l~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~a  132 (145)
                      .|.+||..||.||.+|..+  .|...|.|.++  |.++... .+||+.|++  .++++|+.|.++|.|.++..++..|..
T Consensus         7 ~E~~I~s~rA~Vm~~D~~tk~~WvP~g~~~~~V~i~~d~~rnsyRIvg~~d--~kvvinc~I~~~l~Y~kasp~FHqW~d   84 (168)
T 1i2h_A            7 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDG--SKAIINSTITPNMTFTKTSQKFGQWAD   84 (168)
T ss_dssp             SSCCSEEEEEEEEEECTTSSCCSEESCSSCEEEEEEEETTTTEEEEEEEET--TEEEEEEECCTTCCEEEEETTEEEEEE
T ss_pred             cceeEEEEEEEEEEECCCCCCceeecCCCCeEEEEEEcCCCCEEEEEEccC--CEEEEecEecCCcEEeeCCcccceeec
Confidence            4778999999999998864  79995555554  6655543 799999985  599999999999999998888888875

>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A

Probab=98.51  E-value=5.6e-07  Score=64.59  Aligned_cols=74  Identities=19%  Similarity=0.344  Sum_probs=62.3

Q ss_pred             cceeEEEEeeeEEEEccCC-Cceeee--eEE--EEeeecCC-CeeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEE
Q psy8312          58 EEVNILQINCKLFLYDSVK-TWIELG--RGQ--LRLNDINN-SLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLT  131 (145)
Q Consensus        58 ~E~~vf~~raKLy~f~~~~-~WkerG--~G~--lkl~~~~~-~~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~  131 (145)
                      .|.+|+++||.+|.+|+.+ .|.-.|  .|.  +.|.++.. ..+||+.|.-+..++++|+.|+++|.+.+....+-.|.
T Consensus         2 ~e~~i~~~~A~V~~~d~~~~~W~p~~~~~g~s~V~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w~   81 (112)
T 1evh_A            2 SEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGLKYNQATQTFHQWR   81 (112)
T ss_dssp             CEEEEEEEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETTTTEEEEEEEETTTCCEEEEEEECTTCCCBCCSSSEEEEE
T ss_pred             CceeEEEEEEEEEEEcCCCCceEECCCCCCceEEEEEEECCCCEEEEEEEECCCCcEEEeeEecCCceEEecCccceeEe
Confidence            3789999999999999877 899988  344  77777653 38999999977889999999999999998877776665

>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4

Probab=98.48  E-value=5.4e-07  Score=64.96  Aligned_cols=73  Identities=19%  Similarity=0.308  Sum_probs=62.5

Q ss_pred             ceeEEEEeeeEEEEccCC-Cceeeee---E--EEEeeecCC-CeeEEEEEecC-ceeEEEeeeeccceEEecCCCCeEEE
Q psy8312          59 EVNILQINCKLFLYDSVK-TWIELGR---G--QLRLNDINN-SLSRIVIRVVG-SLRVILNTKIWAEMVVQKPSDNSVRL  130 (145)
Q Consensus        59 E~~vf~~raKLy~f~~~~-~WkerG~---G--~lkl~~~~~-~~~RivmR~d~-~~rvllN~~i~~~m~~~~~~~k~v~~  130 (145)
                      |.+|+++||.+|.+|+.+ .|.-.|.   |  .+.|.++.. ..+||+.|.-+ ..++++|+.|+++|.+.+....+-.|
T Consensus         3 e~~i~~~~A~V~~~d~~~~~W~p~~~g~~gvs~V~~~~d~~~~~yrI~~~~l~~~~~vv~~~~l~~~l~y~~~~p~FH~w   82 (115)
T 1egx_A            3 ETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQW   82 (115)
T ss_dssp             SCEEEEEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETTTTEEEEEEEESSTTCCEEEEEEECSSCCCCCSSTTEEEE
T ss_pred             ceeEEEEEEEEEEEcCCCCceeECCCCCCCccEEEEEEeCCCCEEEEEEEEcCCCCEEEEeeEEcCCceEEecCccceEE
Confidence            678999999999998877 8999886   4  488877654 38999999977 88999999999999999887777666


Q ss_pred             E
Q psy8312         131 T  131 (145)
Q Consensus       131 ~  131 (145)
                      .
T Consensus        83 ~   83 (115)
T 1egx_A           83 R   83 (115)
T ss_dssp             E
T ss_pred             e
Confidence            5

>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A

Probab=98.20  E-value=4.9e-06  Score=60.18  Aligned_cols=75  Identities=13%  Similarity=0.217  Sum_probs=58.0

Q ss_pred             cceeEEEEeeeEEEEccCC-CceeeeeEEE---EeeecC---C---CeeEEEEEecCceeEEEeeeeccceEEecCCCCe
Q psy8312          58 EEVNILQINCKLFLYDSVK-TWIELGRGQL---RLNDIN---N---SLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNS  127 (145)
Q Consensus        58 ~E~~vf~~raKLy~f~~~~-~WkerG~G~l---kl~~~~---~---~~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~  127 (145)
                      .|..|+++||.+|.+|..+ .|.-.|.|-|   .|...+   +   ..+||+.|.-+..++++|+.|.++|.+.+....+
T Consensus         2 ~~~~i~~~~A~V~~~d~~~~~W~p~~~g~ls~v~i~~~~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~F   81 (118)
T 1xod_A            2 SDDSYARVRAVVMTRDDSSGGWLQLGGGGLSSVTVSKTLQPGDSGGTEFLVHGERLRDKTVVLECVLRRDLVYNKVTPTF   81 (118)
T ss_dssp             ---CCEEEEEEEEEECSSSSCEEEGGGCCCEEEEEECC---------CCEEEEEETTTCCEEEEEECCTTCEEEEEETTE
T ss_pred             CCccEEEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCcCCCCCCEEEEEEEECCCCeEEEEEEEeCCcEEEecCCcc
Confidence            3678999999999998766 8999876664   454443   2   2799999997778999999999999999887777


Q ss_pred             EEEEE
Q psy8312         128 VRLTA  132 (145)
Q Consensus       128 v~~~a  132 (145)
                      -.|..
T Consensus        82 h~w~~   86 (118)
T 1xod_A           82 HHWRI   86 (118)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            76654

>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=98.13  E-value=1.1e-05  Score=59.08  Aligned_cols=76  Identities=13%  Similarity=0.170  Sum_probs=60.8

Q ss_pred             ccceeEEEEeeeEEEEccCC-CceeeeeEE---EEeeecC---C---CeeEEEEEecCceeEEEeeeeccceEEecCCCC
Q psy8312          57 EEEVNILQINCKLFLYDSVK-TWIELGRGQ---LRLNDIN---N---SLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDN  126 (145)
Q Consensus        57 E~E~~vf~~raKLy~f~~~~-~WkerG~G~---lkl~~~~---~---~~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k  126 (145)
                      ..|..|+++||-+|.+|..+ .|.-.|.|-   +.|-..+   +   ..+||+.+.-+..++++|+.|.++|.+.++...
T Consensus        10 ~~~~~i~~~~A~Vm~~D~~~~~W~p~~~g~ls~v~v~~~~~~~d~~~~~yrI~~~~l~d~~vv~~~~l~~~l~Y~~~~p~   89 (126)
T 2jp2_A           10 DDDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPT   89 (126)
T ss_dssp             SCCSEEEEEEEEEEEECTTSSSSEECSCCSCEEEEEECCBCTTCSSCBCEEEEEEESSSSCEEEEEEESSCCCEEEEETT
T ss_pred             CCcceEEEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCCCCCCCCEEEEEEEEcCCCeEEEEEEEeCCceEEecCCc
Confidence            46789999999999998766 899988776   3343332   2   279999999778899999999999999987777


Q ss_pred             eEEEEE
Q psy8312         127 SVRLTA  132 (145)
Q Consensus       127 ~v~~~a  132 (145)
                      +-.|..
T Consensus        90 FH~w~~   95 (126)
T 2jp2_A           90 FHHWKV   95 (126)
T ss_dssp             EEEEEC
T ss_pred             ceEEEc
Confidence            666653

>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}

Probab=97.40  E-value=0.00087  Score=49.29  Aligned_cols=71  Identities=11%  Similarity=0.178  Sum_probs=55.6

Q ss_pred             eEEEEeeeEEEEccCC-CceeeeeE---EEEeeec--C-C---CeeEEEEEecCceeEEEeeeeccceEEecCCCCeEEE
Q psy8312          61 NILQINCKLFLYDSVK-TWIELGRG---QLRLNDI--N-N---SLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRL  130 (145)
Q Consensus        61 ~vf~~raKLy~f~~~~-~WkerG~G---~lkl~~~--~-~---~~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~  130 (145)
                      ..|.+||-+|.+|+.+ .|.--|-|   .+.|-+.  . .   +.+||+=|+-+-..|+||+.|.++|.+.++..++=.|
T Consensus        12 ~~~~~rA~Vm~~Dd~tk~WlP~gg~glS~v~iy~~~~~~~~~~~~yRIvg~r~~d~~vvinc~I~~~l~Ynkatp~FHqW   91 (130)
T 3syx_A           12 SYARVRAVVMTRDDSSGGWLPLGGSGLSSVTVFKVPHQEENGCADFFIRGERLRDKMVVLECMLKKDLIYNKVTPTFHHW   91 (130)
T ss_dssp             EEEEEEEEEEEECSSSSCEEESSSSCCEEEEEEEEESSSTTSSEEEEEEEEETTTCCEEEEEECCTTCEEEEEETTEEEE
T ss_pred             eeeEEEEEeeeEcCCCCceEeCCCCCCceEEEEeccCCCCCCCcEEEEEEEecCCCeEEEeeeecCCceEEecccccccc
Confidence            5799999999999987 89987533   4445442  2 1   2799999976667899999999999999987776555


Q ss_pred             E
Q psy8312         131 T  131 (145)
Q Consensus       131 ~  131 (145)
                      .
T Consensus        92 r   92 (130)
T 3syx_A           92 K   92 (130)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4

Probab=94.09  E-value=0.24  Score=37.02  Aligned_cols=69  Identities=16%  Similarity=0.184  Sum_probs=53.9

Q ss_pred             eeEEEEeeeEEEEccCCCceeeeeEEEEeeecCCC---eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEE
Q psy8312          60 VNILQINCKLFLYDSVKTWIELGRGQLRLNDINNS---LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRL  130 (145)
Q Consensus        60 ~~vf~~raKLy~f~~~~~WkerG~G~lkl~~~~~~---~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~  130 (145)
                      .++-..=|.||.-+.++.|.-.+.|.+-+.+....   -.||+=...  ++++.++.|+.+|.+...-.....|
T Consensus        41 ~~lataVaqLy~a~~~~~W~~~~~Gal~~VkD~~~rsyf~RlvDl~~--~~viweqELY~~f~Y~~~r~~FHtF  112 (152)
T 1mke_A           41 VTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKD--GKLLWEQELYNNFVYNSPRGYFHTF  112 (152)
T ss_dssp             EEEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTTTEEEEEEECSSS--CSEEEEEECCSSCCCBCSSSSEEEE
T ss_pred             cEEEEeeEEEEEECCCCceEecCceEEEEEEECCCCeEEEEEEEccC--CeEEEEeecccceeeccCCCeEEEE
Confidence            46777889999998766899999999988776543   358887764  5899999999999997654443333

>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}

Probab=93.85  E-value=0.21  Score=37.87  Aligned_cols=68  Identities=15%  Similarity=0.170  Sum_probs=53.2

Q ss_pred             eEEEEeeeEEEEccCCCceeeeeEEEEeeecCCC---eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEE
Q psy8312          61 NILQINCKLFLYDSVKTWIELGRGQLRLNDINNS---LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRL  130 (145)
Q Consensus        61 ~vf~~raKLy~f~~~~~WkerG~G~lkl~~~~~~---~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~  130 (145)
                      ++-..=|.||.-+.++.|.-.+.|.|-+.+....   -.||+=..+  ++++.++.|+.+|.+...-.....|
T Consensus        59 ~lataVaqLy~a~~~~~W~~~~~Gal~~vkD~~~rsyf~RlvDl~~--~~vvweqELY~~f~Y~~~r~~FHtF  129 (169)
T 2ifs_A           59 TMSSAVVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKD--GKLLWEQELYNNFVYNSPRGYFHTF  129 (169)
T ss_dssp             EEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTTTEEEEEEEETTT--CCCCEEEECCSSCCCBCCCSSEEEE
T ss_pred             EEEEEEEEEEEECCCCeeEecCceEEEEEEECCCCeEEEEEEEccC--CeEEEEeecccceeeccCCCeEEEe
Confidence            5667779999998766899999999988776543   358888874  5899999999999997654443333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d2crfa1	137	b.55.1.3 (A:8-144) Ran binding protein 3 {Human (H	2e-22
d1rrpb_	134	b.55.1.3 (B:) Nuclear pore complex protein Nup358	4e-17
d1k5db_	146	b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human	2e-15
d1xkea1	118	b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (H	7e-12

>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran binding protein 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (208), Expect = 2e-22
 Identities = 53/112 (47%), Positives = 74/112 (66%), Gaps = 8/112 (7%)

Query: 42  ACKRKYEAVAVVTGEEEEVNILQINCKLFLYDS-VKTWIELGRGQLRLN-----DINNSL 95
           A K   E V V+TGEE E N+LQ+ CKLF++D   ++W+E GRG LRLN     D     
Sbjct: 2   ARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQ 61

Query: 96  SRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLTAI--ENGQAKVYLVKV 145
           SR+V+R  GSLR+ILNTK+WA+M + K S+ S+ +TA+  E+   KV+L+  
Sbjct: 62  SRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQGVKVFLISA 113

>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Length = 134

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Nuclear pore complex protein Nup358
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (173), Expect = 4e-17
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 48  EAVAVVTGEEEEVNILQINCKLFLYDSV-KTWIELGRGQLRLN-DINNSLSRIVIRVVGS 105
           + + V TGEE+E        KLF +D   K W E G G +++     +   R+++R    
Sbjct: 10  DKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQV 69

Query: 106 LRVILNTKIWAEMVVQ--KPSDNSVRLTAI----ENGQAKVYLVKV 145
           L++  N  I  +M +     SD S    A+    E  + +   ++ 
Sbjct: 70  LKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRF 115

>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 1, Ranbp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (162), Expect = 2e-15
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 50  VAVVTGEEEEVNILQINCKLFLYDSVK---TWIELGRGQLRLN-DINNSLSRIVIRVVGS 105
             + T EE+E  + ++  KLF + S      W E G G ++L         R+++R   +
Sbjct: 15  QEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKT 74

Query: 106 LRVILNTKIWAEMVVQKPSDNSVRLT-------AIENGQAKVYLVKV 145
           L++  N  I   M ++  + +            A E  + ++  ++ 
Sbjct: 75  LKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRF 121

>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 7e-12
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 59  EVNILQINCKLFLYDSV-KTWIELGRGQLRLNDIN-NSLSRIVIRVVGSLRVILNTKIWA 116
           E  +     KLF +D+    W E G G L++     N   R+++R    L+V  N  I  
Sbjct: 1   EKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITT 60

Query: 117 EMVV--QKPSDNSVRLTAI----ENGQAKVYLVKV 145
            M +     SD +    A      + + +    K 
Sbjct: 61  TMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKF 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d2crfa1	137	Ran binding protein 3 {Human (Homo sapiens) [TaxId	100.0
d1rrpb_	134	Nuclear pore complex protein Nup358 {Human (Homo s	100.0
d1k5db_	146	Ran-binding protein 1, Ranbp1 {Human (Homo sapiens	100.0
d1xkea1	118	Ran-binding protein 2 {Human (Homo sapiens) [TaxId	99.96
d1evha_	111	Enabled {Mouse (Mus musculus) [TaxId: 10090]}	99.87
d1egxa_	115	Vasodilator-stimulated phosphoprotein (VASP) {Huma	99.86
d1mkea1	114	Actin regulatory protein WASP {Rat (Rattus norvegi	98.62
d1i2ha_	145	Homer {Rat (Rattus norvegicus) [TaxId: 10116]}	98.18
d1xoda1	114	Sprouty-related, EVH1 domain-containing protein 1,	97.28

>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran binding protein 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-36  Score=225.66  Aligned_cols=104  Identities=51%  Similarity=0.890  Sum_probs=96.6

Q ss_pred             cccccCceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCC----C-eeEEEEEecCceeEEEeeeec
Q psy8312          42 ACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINN----S-LSRIVIRVVGSLRVILNTKIW  115 (145)
Q Consensus        42 ~~~~~l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~----~-~~RivmR~d~~~rvllN~~i~  115 (145)
                      +.+++|++|+++||||+|++||++|||||+|++++ +|+|||+|+||||++++    + ++|||||+++++|||||++|+
T Consensus         2 ~~k~~l~ev~v~TGEE~E~~l~~~r~KL~~fd~~~~~WkerG~G~lkl~~~k~~~~~t~k~RlvmR~~~~~kv~lN~~i~   81 (137)
T d2crfa1           2 ARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLW   81 (137)
T ss_dssp             SCCSCSSCTTTSCCCCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECC
T ss_pred             CccccCccccccCCccCcEEEEEEEEEEEEEeCCCCcCcccCEEEEEEEEEeccCCCCceEEEEEEECCCCeEEEeCEEC
Confidence            45789999999999999999999999999999766 89999999999998764    2 799999999999999999999


Q ss_pred             cceEEecCCCCeEEEEEE--cCCcceEEEEeC
Q psy8312         116 AEMVVQKPSDNSVRLTAI--ENGQAKVYLVKV  145 (145)
Q Consensus       116 ~~m~~~~~~~k~v~~~a~--~~~~~~~~likv  145 (145)
                      ++|++++.++++|+|+|+  +++.+++|||+|
T Consensus        82 ~~m~~~~~~~k~v~~~~~d~~~~~~~~~li~~  113 (137)
T d2crfa1          82 AQMQIDKASEKSIHITAMDTEDQGVKVFLISA  113 (137)
T ss_dssp             TTCCEECCSSSEEEEEEEBSSSCCEEEEEEEC
T ss_pred             CCCccccCCCCEEEEEeecCCCCceEEEEEEE
Confidence            999999998999999998  578899999997

>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Nuclear pore complex protein Nup358
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-35  Score=216.22  Aligned_cols=104  Identities=25%  Similarity=0.348  Sum_probs=95.1

Q ss_pred             cccccCceeecccccccceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceE
Q psy8312          42 ACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMV  119 (145)
Q Consensus        42 ~~~~~l~~vev~tGEE~E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~  119 (145)
                      |.+.++++|++.||||+|+++|+.|||||+|++++ +|++||+|+||||+++++ ++|||||+|++++||||+.|+++|+
T Consensus         4 p~~~l~~~v~~~tgEE~E~~if~~r~KL~~~~~~~~~WkerGvG~lkil~~~~t~~~RlvmR~d~~~kv~lN~~i~~~~~   83 (134)
T d1rrpb_           4 PVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMK   83 (134)
T ss_dssp             CSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSSCC
T ss_pred             CcccCCCccceecCccCcEEEEEEeeEEEEEcCCCCceeeeeEEEEEEEEcCCCCcEEEEEEEcCCCcEEEEEEECCCcE
Confidence            55666688999999999999999999999998776 899999999999999976 9999999999999999999999999


Q ss_pred             EecC--CCCeEEEEEE----cCCcceEEEEeC
Q psy8312         120 VQKP--SDNSVRLTAI----ENGQAKVYLVKV  145 (145)
Q Consensus       120 ~~~~--~~k~v~~~a~----~~~~~~~~likv  145 (145)
                      ++..  +.++++|++.    +++++.+|+|||
T Consensus        84 ~~~~~~~~~~~~~~~~d~~~~~~k~~~~~lrf  115 (134)
T d1rrpb_          84 LTPNAGSDRSFVWHALDYADELPKPEQLAIRF  115 (134)
T ss_dssp             CBCSTTCTTEEEEEEEECTTSSCEEEEEEEEC
T ss_pred             EeecCCCceEEEEEeeccCCCCCcEEEEEEEE
Confidence            9976  4688999988    367899999997

>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 1, Ranbp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-35  Score=217.70  Aligned_cols=104  Identities=20%  Similarity=0.305  Sum_probs=93.8

Q ss_pred             cccccCceeecccccccceeEEEEeeeEEEEccCC---CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccc
Q psy8312          42 ACKRKYEAVAVVTGEEEEVNILQINCKLFLYDSVK---TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAE  117 (145)
Q Consensus        42 ~~~~~l~~vev~tGEE~E~~vf~~raKLy~f~~~~---~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~  117 (145)
                      .|++.|++++++||||+|++||+.|||||+|+.++   +|+|||+|+||||+++++ ++|||||+|+++||||||+|+++
T Consensus         7 ~pvv~l~~~ev~tgEE~E~~lf~~r~Kl~~f~~~~~~~~WkerGvG~lkilk~k~t~~~RllmR~d~~~kv~lN~~i~~~   86 (146)
T d1k5db_           7 EPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPM   86 (146)
T ss_dssp             CCSCCCCCCCCCCSCSSCCCSEEEEEEEEEECCTTSSCCEEEEEEEEEEEEECSSSCCEEEEEEETTTCCEEEEEECCSS
T ss_pred             cccCcCCCcccccCccCceEEEEEeeEEEEEcccCCCCCccceeEEEEEEEEcCCCCeEEEEEEEcCCCcEEEEeEecCC
Confidence            44556788999999999999999999999998654   599999999999999977 99999999999999999999999


Q ss_pred             eEEecCC--CCeEEEEEE-----cCCcceEEEEeC
Q psy8312         118 MVVQKPS--DNSVRLTAI-----ENGQAKVYLVKV  145 (145)
Q Consensus       118 m~~~~~~--~k~v~~~a~-----~~~~~~~~likv  145 (145)
                      |++.+..  .+.+.|++.     +++++++|+|||
T Consensus        87 m~~~~~~~~~~~~~~~~~~d~~~~~~k~~~~~irf  121 (146)
T d1k5db_          87 MELKPNAGSDRAWVWNTHADFADECPKPELLAIRF  121 (146)
T ss_dssp             CCCCBCSSCSSEEEEEEEEECTTSSCEEEEEEEEC
T ss_pred             ceecccCCCceeEEEEecCCCccCCCceEEEEEEE
Confidence            9999863  678999876     468999999997

>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-29  Score=182.40  Aligned_cols=87  Identities=24%  Similarity=0.283  Sum_probs=80.3

Q ss_pred             ceeEEEEeeeEEEEccCC-CceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecC--CCCeEEEEEE-
Q psy8312          59 EVNILQINCKLFLYDSVK-TWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKP--SDNSVRLTAI-  133 (145)
Q Consensus        59 E~~vf~~raKLy~f~~~~-~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~--~~k~v~~~a~-  133 (145)
                      |+++|+.|||||+|++++ +|+|||+|+||||+++++ ++|||||+|+++||+|||.|+++|++.+.  +.++|+|++. 
T Consensus         1 E~~lf~~raKLy~~~~~~~~WkerG~G~lkilk~~~~~~~RlvmR~d~~~kv~lN~~i~~~~~~~~~~~~~~~~~~~~~d   80 (118)
T d1xkea1           1 EKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASD   80 (118)
T ss_dssp             EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTTSCEEECTTCSSCEEEEEEE
T ss_pred             CccEEEEEEEEEEEeCCCCChhHhceeEEEEEEeCCCCcEEEEEEECCCCcEEEEeEEcCCCccccccCCceEEEEeccc
Confidence            789999999999998876 899999999999999865 99999999999999999999999999876  4688999987 


Q ss_pred             ---cCCcceEEEEeC
Q psy8312         134 ---ENGQAKVYLVKV  145 (145)
Q Consensus       134 ---~~~~~~~~likv  145 (145)
                         +++++++|+|||
T Consensus        81 ~~~~~~~~~~~~lrf   95 (118)
T d1xkea1          81 FSDGDAKLEQLAAKF   95 (118)
T ss_dssp             CSSSCSEEEEEEEEC
T ss_pred             cCCCCCceEEEEEEE
Confidence               478899999998

>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Enabled
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.8e-22  Score=143.77  Aligned_cols=84  Identities=18%  Similarity=0.328  Sum_probs=74.1

Q ss_pred             cceeEEEEeeeEEEEccCC-Cceeeee----EEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEE
Q psy8312          58 EEVNILQINCKLFLYDSVK-TWIELGR----GQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLT  131 (145)
Q Consensus        58 ~E~~vf~~raKLy~f~~~~-~WkerG~----G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~  131 (145)
                      +|++||++|||||+||+++ +|++||.    |.++|++++++ ++|||||++++++|||||.|+++|++.+.+++...|.
T Consensus         1 nE~~~~~~rAkl~~~d~~~~~Wk~rG~g~~~~~v~il~~~~~~~~Rivmrr~~~~kv~~N~~i~~~~~y~~~~~~~~~w~   80 (111)
T d1evha_           1 SEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGLKYNQATQTFHQWR   80 (111)
T ss_dssp             CEEEEEEEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETTTTEEEEEEEETTTCCEEEEEEECTTCCCBCCSSSEEEEE
T ss_pred             CcceeEEEEEEEEEEeCCCCcccccCCCceeEEEEEEEeCCCCEEEEEEEEccCCeEEEEEeccCccceecCCCceEEEe
Confidence            5899999999999999887 8999985    55999999876 8999999999999999999999999999888888886


Q ss_pred             EEcCCcceEEEEeC
Q psy8312         132 AIENGQAKVYLVKV  145 (145)
Q Consensus       132 a~~~~~~~~~likv  145 (145)
                      +.    .++|.|+|
T Consensus        81 ~~----~~~fglrF   90 (111)
T d1evha_          81 DA----RQVYGLNF   90 (111)
T ss_dssp             CS----SCEEEEEE
T ss_pred             cC----ceEEEEEc
Confidence            53    25677776

>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Vasodilator-stimulated phosphoprotein (VASP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.7e-22  Score=141.20  Aligned_cols=84  Identities=19%  Similarity=0.318  Sum_probs=73.6

Q ss_pred             cceeEEEEeeeEEEEccCC-CceeeeeE-----EEEeeecCCC-eeEEEEEecCc-eeEEEeeeeccceEEecCCCCeEE
Q psy8312          58 EEVNILQINCKLFLYDSVK-TWIELGRG-----QLRLNDINNS-LSRIVIRVVGS-LRVILNTKIWAEMVVQKPSDNSVR  129 (145)
Q Consensus        58 ~E~~vf~~raKLy~f~~~~-~WkerG~G-----~lkl~~~~~~-~~RivmR~d~~-~rvllN~~i~~~m~~~~~~~k~v~  129 (145)
                      +|++||++|||||+||.++ +|++||+|     .++|++++++ .+|||||++++ ++|||||.|+++|.++++.+..-.
T Consensus         2 nE~~l~~~rAkl~~~d~~tk~WkerG~G~~~~~~vkil~~~~~~~~Riv~rr~~~~~kv~lN~~I~~~~~~~~~~~~f~~   81 (115)
T d1egxa_           2 SETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQ   81 (115)
T ss_dssp             CSCEEEEEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETTTTEEEEEEEESSTTCCEEEEEEECSSCCCCCSSTTEEE
T ss_pred             CcceeEEEEEEEEEEeCCCCcceeCCCCcEEEEEEEEEecCCCceEEEEEEEEcCCCEEEEEeEECCCcceEEcCCccee
Confidence            6899999999999999887 99999999     7899999876 99999999876 899999999999999998777666


Q ss_pred             EEEEcCCcceEEEEeC
Q psy8312         130 LTAIENGQAKVYLVKV  145 (145)
Q Consensus       130 ~~a~~~~~~~~~likv  145 (145)
                      |..    ..+.|.|||
T Consensus        82 w~~----~~~~f~lrF   93 (115)
T d1egxa_          82 WRD----ARQVWGLNF   93 (115)
T ss_dssp             EES----SSCEEEEEE
T ss_pred             ecc----cceEEEEEe
Confidence            642    346788876

>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Actin regulatory protein WASP
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.62  E-value=1.2e-07  Score=66.37  Aligned_cols=72  Identities=14%  Similarity=0.161  Sum_probs=63.9

Q ss_pred             eeEEEEeeeEEEEccCCCceeeeeEEEEeeecCCC-eeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEE
Q psy8312          60 VNILQINCKLFLYDSVKTWIELGRGQLRLNDINNS-LSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLT  131 (145)
Q Consensus        60 ~~vf~~raKLy~f~~~~~WkerG~G~lkl~~~~~~-~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~  131 (145)
                      .++-...++||..++++.|..+|.|.+-+..+... .++|+++..+.+++|+|+.|+++|++.+..+....|.
T Consensus        11 ~~latavv~lY~~~~~~~W~~~~tG~v~~v~d~~~~~~~l~v~d~~~~~vi~e~eI~~~~~Y~k~~~~Fh~~~   83 (114)
T d1mkea1          11 VTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFA   83 (114)
T ss_dssp             EEEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTTTEEEEEEECSSSCSEEEEEECCSSCCCBCSSSSEEEEE
T ss_pred             ceeeeEEEEEEEECCCCeEEECCceEEEEEEECCCCeEEEEEEECCCCeEEEEEEccCCcEEeccCCeEEEEE
Confidence            46778899999998766899999999999887644 8999999999999999999999999999888888884

>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Homer
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.18  E-value=1.5e-06  Score=63.47  Aligned_cols=72  Identities=18%  Similarity=0.278  Sum_probs=59.3

Q ss_pred             cceeEEEEeeeEEEEccCC--CceeeeeEEEEeee--cC-CCeeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEE
Q psy8312          58 EEVNILQINCKLFLYDSVK--TWIELGRGQLRLND--IN-NSLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLT  131 (145)
Q Consensus        58 ~E~~vf~~raKLy~f~~~~--~WkerG~G~lkl~~--~~-~~~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~  131 (145)
                      .|..||++||-+|.+|..+  .|.--|-|..+|.-  +. ..-+|||-++|+  +|+||+.|.++|+|.+++.++-.|.
T Consensus         4 ~E~~i~~~rA~V~~~d~~tkk~W~P~s~~~s~V~i~~~~~~~~yRIvg~~d~--~vvin~~i~~~l~y~kas~~FhqWr   80 (145)
T d1i2ha_           4 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGS--KAIINSTITPNMTFTKTSQKFGQWA   80 (145)
T ss_dssp             SSCCSEEEEEEEEEECTTSSCCSEESCSSCEEEEEEEETTTTEEEEEEEETT--EEEEEEECCTTCCEEEEETTEEEEE
T ss_pred             cccceeEEEEEEEEECCCCCceeEECCCCceEEEEEEcCCCceEEEEEecCC--eEEEEeeccCCceeeecccceeEee
Confidence            4778999999999999765  59987777666643  33 238999999875  9999999999999999888877774

>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Sprouty-related, EVH1 domain-containing protein 1, Spred-1
species: Western clawed frog (Xenopus tropicalis) [TaxId: 8364]

Probab=97.28  E-value=0.0005  Score=47.81  Aligned_cols=70  Identities=14%  Similarity=0.239  Sum_probs=52.3

Q ss_pred             EEEEeeeEEEEccCC-CceeeeeEEE---Eeee---cCC---CeeEEEEEecCceeEEEeeeeccceEEecCCCCeEEEE
Q psy8312          62 ILQINCKLFLYDSVK-TWIELGRGQL---RLND---INN---SLSRIVIRVVGSLRVILNTKIWAEMVVQKPSDNSVRLT  131 (145)
Q Consensus        62 vf~~raKLy~f~~~~-~WkerG~G~l---kl~~---~~~---~~~RivmR~d~~~rvllN~~i~~~m~~~~~~~k~v~~~  131 (145)
                      +.++||.+|.+|..+ .|.--|-|-+   .|-.   ..+   ..+||+.|+-+-..+++|+.|+++|.+.+....+-.|.
T Consensus         2 ~~~~RA~Vm~~dd~tk~W~P~gggglS~v~v~~~~~~~~~~~~~Y~I~g~~l~d~~vvi~~~l~~~~~Y~~~~~~FH~w~   81 (114)
T d1xoda1           2 YARVRAVVMTRDDSSGGWLQLGGGGLSSVTVSKTLQPGDSGGTEFLVHGERLRDKTVVLECVLRRDLVYNKVTPTFHHWR   81 (114)
T ss_dssp             CEEEEEEEEEECSSSSCEEEGGGCCCEEEEEECC---------CCEEEEEETTTCCEEEEEECCTTCEEEEEETTEEEEE
T ss_pred             cceEEEEEEEEeCCCCceEecCCCCcceEEEEEEecCCCCCCceEEEEEEEccCCcEEEEEEecCCCEEecCCCceEEEE
Confidence            468899999999887 8987765432   2221   112   27999999988899999999999999998766555554