Psyllid ID: psy8426

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28

MKSIVHNLILHVPIQLACHLLNKLNPSFWAFCVQALLAQRFNIGRILDMGTQHHRYSYRIQYLPELKPCYRYSLEGNRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFGDKNCLCECDTCEIRMKGAFAQSSVEPQTTQPSRYCLRDTDMRLNKRKLHKKLNRLLLASDKNDTNSSDNSSKYSLVQWNNNSKENIFDLGTFPLF

cHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccEEEEccccccEEEEEEccccccEEEEcEEEEEcccHHHHHHHHHccccccEEEccccccccEEEcccccccccccccccEEEEEcccEEEEEEEEccccccEEEEEccccccccccEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc

cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccEEEEccccEEEEEEEEcccccEEEEEEEEEEEccHHHHHHHHHcccccEEEEEEccccccEEEEccHHHHccccccccEEEEccccEEEEEEEEEcccccEEEEEEccccccccccEEEEEEHHcccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccEEEEEEEccccHHHccccccccc

MKSIVHNLILHVPIQLACHLLNKLNPSFWAFCVQALLAQRFNIgrildmgtqhhrysyriqylpelkpcyryslegnrgaRIVATrkwekndnIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYSCRKNCaqlwlgpaayinhdcrpncrfvateRDTACVKVLRDIEqgeeitcfygedffgdknclcecdtceirmkgafaqssvepqttqpsryclrdtdmrLNKRKLHKKLNRLLLAsdkndtnssdnsskYSLVQWNnnskenifdlgtfplf

MKSIVHNLILHVPIQLACHLLNKLNPSFWAFCVQALLAQRFNIGRILDMGTQHHRYSYRIQYLPELKPCYRYSLEGNRGARIvatrkwekndnIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFGDKNCLCECDTCEIRMKgafaqssvepqttqpsryclrdtdmrlnKRKLHKKLNRLllasdkndtnssdnsskyslvqwnnnskenifdlgtfplf

MKSIVHNLILHVPIQLACHLLNKLNPSFWAFCVQALLAQRFNIGRILDMGTQHHRYSYRIQYLPELKPCYRYSLEGNRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFGDKNCLCECDTCEIRMKGAFAQSSVEPQTTQPSRYCLRDTDMrlnkrklhkklnrlllAsdkndtnssdnsskysLVQWNNNSKENIFDLGTFPLF

***IVHNLILHVPIQLACHLLNKLNPSFWAFCVQALLAQRFNIGRILDMGTQHHRYSYRIQYLPELKPCYRYSLEGNRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFGDKNCLCECDTCEIRMKGAFA*****************************************************************IFD*******

*KSIVHNLILHVPIQLACHLLNKLNPSFWAFCVQALLAQRFNIGRILDMGTQHHRYSYRIQYLPELKPCYRYSLEGNRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFGDKNCLCECDTC*******************************************************************************TFPL*

MKSIVHNLILHVPIQLACHLLNKLNPSFWAFCVQALLAQRFNIGRILDMGTQHHRYSYRIQYLPELKPCYRYSLEGNRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFGDKNCLCECDTCEIRMKGAF***********PSRYCLRDTDMRLNKRKLHKKLNRLLLASDK***********YSLVQWNNNSKENIFDLGTFPLF

MKSIVHNLILHVPIQLACHLLNKLNPSFWAFCVQALLAQRFNIGRILDMGTQHHRYSYRIQYLPELKPCYRYSLEGNRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFGDKNCLCECDTCEIRMK******************************************************SKYSLVQWNNNSKE**FDLGTFPLF

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		278	2.2.26 [Sep-21-2011]
Q4FZB7		885	Histone-lysine N-methyltr	yes	N/A	0.705	0.221	0.570	2e-59
Q3U8K7		883	Histone-lysine N-methyltr	yes	N/A	0.705	0.221	0.565	8e-59
Q9W5E0		1300	Histone-lysine N-methyltr	yes	N/A	0.593	0.126	0.640	1e-58
Q6GP17		855	Histone-lysine N-methyltr	N/A	N/A	0.589	0.191	0.656	1e-58
Q5RJX8		785	Histone-lysine N-methyltr	N/A	N/A	0.589	0.208	0.656	2e-58
P0C2N5		883	Histone-lysine N-methyltr	yes	N/A	0.755	0.237	0.547	1e-57
Q29RP8		393	Histone-lysine N-methyltr	yes	N/A	0.694	0.491	0.568	1e-57
Q5U3H2		808	Histone-lysine N-methyltr	yes	N/A	0.687	0.236	0.582	2e-57
A0JMZ4		761	Histone-lysine N-methyltr	N/A	N/A	0.618	0.226	0.607	2e-55
P0C2N6		470	Histone-lysine N-methyltr	no	N/A	0.730	0.431	0.523	1e-52

>sp\|Q4FZB7\|SV421_HUMAN Histone-lysine N-methyltransferase SUV420H1 OS=Homo sapiens GN=SUV420H1 PE=1 SV=4	Back alignment and function desciption

 Score =  229 bits (583), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 118/207 (57%), Positives = 145/207 (70%), Gaps = 11/207 (5%)

Query: 65  ELKPCYRYSLEGNRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMY 124
           E+ PC RYS E N GA+IVAT++W++ND I  LVGCIAEL++ EE  LL  G NDFSVMY
Sbjct: 196 EILPCNRYSSEQN-GAKIVATKEWKRNDKIELLVGCIAELSEIEENMLLRHGENDFSVMY 254

Query: 125 SCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFGD 184
           S RKNCAQLWLGPAA+INHDCRPNC+FV+T RDTACVK LRDIE GEEI+C+YG+ FFG+
Sbjct: 255 STRKNCAQLWLGPAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGE 314

Query: 185 KNCLCECDTCEIRMKGAFAQSSVEPQTTQP---SRYCLRDTDMRLNKRKLHKKLNRLLLA 241
            N  CEC TCE R  GAF +S V      P   S+Y LR+TD RLN      +L +L  +
Sbjct: 315 NNEFCECYTCERRGTGAF-KSRVGLPAPAPVINSKYGLRETDKRLN------RLKKLGDS 367

Query: 242 SDKNDTNSSDNSSKYSLVQWNNNSKEN 268
           S  +D+ S  +++     Q  NN+  N
Sbjct: 368 SKNSDSQSVSSNTDADTTQEKNNATSN 394

Histone methyltransferase that specifically trimethylates 'Lys-20' of histone H4. H4 'Lys-20' trimethylation represents a specific tag for epigenetic transcriptional repression. Mainly functions in pericentric heterochromatin regions, thereby playing a central role in the establishment of constitutive heterochromatin in these regions. SUV420H1 is targeted to histone H3 via its interaction with RB1 family proteins (RB1, RBL1 and RBL2).
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp\|Q3U8K7\|SV421_MOUSE Histone-lysine N-methyltransferase SUV420H1 OS=Mus musculus GN=Suv420h1 PE=1 SV=2	Back alignment and function description

>sp\|Q9W5E0\|SUV42_DROME Histone-lysine N-methyltransferase Suv4-20 OS=Drosophila melanogaster GN=Hmt4-20 PE=1 SV=1	Back alignment and function description

>sp\|Q6GP17\|S421A_XENLA Histone-lysine N-methyltransferase SUV420H1-A OS=Xenopus laevis GN=suv420h1-a PE=2 SV=1	Back alignment and function description

>sp\|Q5RJX8\|S421B_XENLA Histone-lysine N-methyltransferase SUV420H1-B OS=Xenopus laevis GN=suv420h1-b PE=2 SV=1	Back alignment and function description

>sp\|P0C2N5\|SV421_RAT Histone-lysine N-methyltransferase SUV420H1 OS=Rattus norvegicus GN=Suv420h1 PE=2 SV=1	Back alignment and function description

>sp\|Q29RP8\|SV421_BOVIN Histone-lysine N-methyltransferase SUV420H1 OS=Bos taurus GN=SUV420H1 PE=2 SV=1	Back alignment and function description

>sp\|Q5U3H2\|SV421_DANRE Histone-lysine N-methyltransferase SUV420H1 OS=Danio rerio GN=suv420h1 PE=2 SV=2	Back alignment and function description

>sp\|A0JMZ4\|SV422_XENLA Histone-lysine N-methyltransferase SUV420H2 OS=Xenopus laevis GN=suv420h2 PE=2 SV=1	Back alignment and function description

>sp\|P0C2N6\|SV422_RAT Histone-lysine N-methyltransferase SUV420H2 OS=Rattus norvegicus GN=Suv420h2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		278
91081535		700	PREDICTED: similar to Suv4-20 CG13363-PA	0.582	0.231	0.745	6e-68
242020905		551	conserved hypothetical protein [Pediculu	0.658	0.332	0.661	3e-67
383852111		1050	PREDICTED: uncharacterized protein LOC10	0.633	0.167	0.687	1e-65
307172382		1161	Histone-lysine N-methyltransferase Suv4-	0.611	0.146	0.705	2e-65
332027439		1287	Histone-lysine N-methyltransferase Suv4-	0.611	0.132	0.699	2e-65
340728733		1136	PREDICTED: hypothetical protein LOC10064	0.586	0.143	0.715	3e-65
380026293		1140	PREDICTED: uncharacterized protein LOC10	0.586	0.142	0.721	3e-65
347963046		1865	AGAP000042-PA [Anopheles gambiae str. PE	0.593	0.088	0.648	5e-65
307206288		1181	Histone-lysine N-methyltransferase Suv4-	0.611	0.143	0.699	8e-65
345487802		1086	PREDICTED: hypothetical protein LOC10012	0.597	0.152	0.715	9e-65

>gi\|91081535\|ref\|XP_974904.1\| PREDICTED: similar to Suv4-20 CG13363-PA [Tribolium castaneum] gi\|270006169\|gb\|EFA02617.1\| hypothetical protein TcasGA2_TC008337 [Tribolium castaneum]	Back alignment and taxonomy information

 Score =  263 bits (672), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 123/165 (74%), Positives = 138/165 (83%), Gaps = 3/165 (1%)

Query: 66  LKPCYRYSLEGNRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYS 125
           ++PCYRYSLEG +GA+I AT+KW KND I  LVGCIAELT+EEEK+LLH G NDFSVMYS
Sbjct: 118 IEPCYRYSLEGQKGAKISATKKWYKNDKIECLVGCIAELTEEEEKQLLHPGKNDFSVMYS 177

Query: 126 CRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFGDK 185
           CRKNCAQLWLGPAAYINHDCR NC+FVAT RDTACVKVLRDIE GEEITCFYGEDFFGDK
Sbjct: 178 CRKNCAQLWLGPAAYINHDCRANCKFVATGRDTACVKVLRDIEAGEEITCFYGEDFFGDK 237

Query: 186 NCLCECDTCEIRMKGAFAQSSVEPQTTQPSRYCLRDTDMRLNKRK 230
           NC CEC+TCE R  GAFA+ S      + + Y LR+TD R+N+ K
Sbjct: 238 NCYCECETCERRGMGAFAKES---DKKEENGYRLRETDNRINRTK 279

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|242020905\|ref\|XP_002430891.1\| conserved hypothetical protein [Pediculus humanus corporis] gi\|212516102\|gb\|EEB18153.1\| conserved hypothetical protein [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|383852111\|ref\|XP_003701572.1\| PREDICTED: uncharacterized protein LOC100875180 [Megachile rotundata]	Back alignment and taxonomy information

>gi\|307172382\|gb\|EFN63848.1\| Histone-lysine N-methyltransferase Suv4-20 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|332027439\|gb\|EGI67522.1\| Histone-lysine N-methyltransferase Suv4-20 [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|340728733\|ref\|XP_003402671.1\| PREDICTED: hypothetical protein LOC100644080 [Bombus terrestris]	Back alignment and taxonomy information

>gi\|380026293\|ref\|XP_003696886.1\| PREDICTED: uncharacterized protein LOC100864139 [Apis florea]	Back alignment and taxonomy information

>gi\|347963046\|ref\|XP_566387.4\| AGAP000042-PA [Anopheles gambiae str. PEST] gi\|333467385\|gb\|EAL41306.4\| AGAP000042-PA [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|307206288\|gb\|EFN84353.1\| Histone-lysine N-methyltransferase Suv4-20 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|345487802\|ref\|XP_003425758.1\| PREDICTED: hypothetical protein LOC100122935 [Nasonia vitripennis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		278
FB\|FBgn0025639		1300	Hmt4-20 "Histone methyltransfe	0.496	0.106	0.760	8.9e-56
UNIPROTKB\|G5E6E5		396	SUV420H1 "Histone-lysine N-met	0.564	0.396	0.654	1.7e-52
UNIPROTKB\|Q29RP8		393	SUV420H1 "Histone-lysine N-met	0.564	0.399	0.654	1.7e-52
UNIPROTKB\|B5MCB3		402	SUV420H1 "Histone-lysine N-met	0.564	0.390	0.654	1.7e-52
UNIPROTKB\|B7WNX0		370	SUV420H1 "Histone-lysine N-met	0.564	0.424	0.654	1.7e-52
UNIPROTKB\|E1C014		857	SUV420H1 "Uncharacterized prot	0.568	0.184	0.652	4.6e-52
UNIPROTKB\|I3LGR8		855	I3LGR8 "Uncharacterized protei	0.564	0.183	0.654	5.8e-52
UNIPROTKB\|E2R868		862	SUV420H1 "Uncharacterized prot	0.564	0.182	0.654	6.2e-52
UNIPROTKB\|F1RVQ2		865	LOC100626246 "Uncharacterized	0.564	0.181	0.654	6.3e-52
MGI\|MGI:2444557		883	Suv420h1 "suppressor of varieg	0.564	0.177	0.654	7.2e-52

FB\|FBgn0025639 Hmt4-20 "Histone methyltransferase 4-20" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 586 (211.3 bits), Expect = 8.9e-56, P = 8.9e-56
 Identities = 105/138 (76%), Positives = 117/138 (84%)

Query:    66 LKPCYRYSLEGNRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYS 125
             ++ CYRY+LE  RGA+I +T++W KND I  LVGCIAELT+ EE  LLH+G NDFSVMYS
Sbjct:   254 IEACYRYTLEEQRGAKISSTKRWSKNDKIECLVGCIAELTEAEEAALLHSGKNDFSVMYS 313

Query:   126 CRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFGDK 185
             CRKNCAQLWLGPAAYINHDCR NC+F+AT RDTACVKVLRDIE GEEITCFYGEDFFGD 
Sbjct:   314 CRKNCAQLWLGPAAYINHDCRANCKFLATGRDTACVKVLRDIEVGEEITCFYGEDFFGDS 373

Query:   186 NCLCECDTCEIRMKGAFA 203
             N  CEC+TCE R  GAFA
Sbjct:   374 NRYCECETCERRGTGAFA 391

GO:0005634 "nucleus" evidence=IDA

GO:0040029 "regulation of gene expression, epigenetic" evidence=IMP

GO:0042799 "histone methyltransferase activity (H4-K20 specific)" evidence=IMP;IDA

GO:0016571 "histone methylation" evidence=IMP;IDA

GO:0034773 "histone H4-K20 trimethylation" evidence=IMP

GO:0034772 "histone H4-K20 dimethylation" evidence=IMP

UNIPROTKB\|G5E6E5 SUV420H1 "Histone-lysine N-methyltransferase SUV420H1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q29RP8 SUV420H1 "Histone-lysine N-methyltransferase SUV420H1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|B5MCB3 SUV420H1 "Histone-lysine N-methyltransferase SUV420H1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|B7WNX0 SUV420H1 "Histone-lysine N-methyltransferase SUV420H1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C014 SUV420H1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LGR8 I3LGR8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R868 SUV420H1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RVQ2 LOC100626246 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:2444557 Suv420h1 "suppressor of variegation 4-20 homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q09265	SUV42_CAEEL	2, ., 1, ., 1, ., 4, 3	0.4479	0.6330	0.6111	yes	N/A
P0C2N5	SV421_RAT	2, ., 1, ., 1, ., 4, 3	0.5470	0.7553	0.2378	yes	N/A
Q29RP8	SV421_BOVIN	2, ., 1, ., 1, ., 4, 3	0.5686	0.6942	0.4910	yes	N/A
Q5U3H2	SV421_DANRE	2, ., 1, ., 1, ., 4, 3	0.5820	0.6870	0.2363	yes	N/A
Q9W5E0	SUV42_DROME	2, ., 1, ., 1, ., 4, 3	0.6404	0.5935	0.1269	yes	N/A
Q4FZB7	SV421_HUMAN	2, ., 1, ., 1, ., 4, 3	0.5700	0.7050	0.2214	yes	N/A
Q3U8K7	SV421_MOUSE	2, ., 1, ., 1, ., 4, 3	0.5652	0.7050	0.2219	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1.43	0.737
3rd Layer	2.1.1	0.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		278
smart00317		124	smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest	4e-19
pfam00856		113	pfam00856, SET, SET domain	2e-14
COG2940		480	COG2940, COG2940, Proteins containing SET domain [	2e-04

>gnl\|CDD\|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

 Score = 80.5 bits (199), Expect = 4e-19
 Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 9/125 (7%)

Query: 68  PCYRYSLEGNRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYSCR 127
                     +G  + AT    K + I   VG I    +E E+R      +     Y   
Sbjct: 1   NKLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITS-EEAEERPKAYDTDGAKAFYLFD 59

Query: 128 KNC-----AQLWLGPAAYINHDCRPNCRFVATERDT---ACVKVLRDIEQGEEITCFYGE 179
            +      A+     A +INH C PNC  +  E +      +  LRDI+ GEE+T  YG 
Sbjct: 60  IDSDLCIDARRKGNLARFINHSCEPNCELLFVEVNGDDRIVIFALRDIKPGEELTIDYGS 119

Query: 180 DFFGD 184
           D+  +
Sbjct: 120 DYANE 124

Putative methyl transferase, based on outlier plant homologues. Length = 124

>gnl\|CDD\|216155 pfam00856, SET, SET domain	Back alignment and domain information

>gnl\|CDD\|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		278
KOG2589\|consensus		453		100.0
KOG4442\|consensus		729		99.96
KOG1080\|consensus		1005		99.83
smart00317		116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	99.82
KOG1082\|consensus		364		99.69
PF00856		162	SET: SET domain; InterPro: IPR001214 The SET domai	99.63
KOG1083\|consensus		1306		99.53
KOG1079\|consensus		739		99.51
KOG1085\|consensus		392		99.49
COG2940		480	Proteins containing SET domain [General function p	99.39
KOG1141\|consensus		1262		98.68
KOG2461\|consensus		396		97.94
KOG1081\|consensus		463		97.82
KOG2084\|consensus		482		97.42
KOG1337\|consensus		472		92.8

>KOG2589\|consensus	Back alignment and domain information

Probab=100.00  E-value=1.4e-56  Score=409.70  Aligned_cols=251  Identities=49%  Similarity=0.831  Sum_probs=231.7

Q ss_pred             CHHHHHHHhhcCCHHHHHHHhhccCCCccHHHHHHHHHhhcCCchhhhhhHHHHHHhhhhhhcC----CCcccceeeecC
Q psy8426           1 MKSIVHNLILHVPIQLACHLLNKLNPSFWAFCVQALLAQRFNIGRILDMGTQHHRYSYRIQYLP----ELKPCYRYSLEG   76 (278)
Q Consensus         1 ~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~f~~h~~~yl~~~~~----~i~~~~Rys~~~   76 (278)
                      ||.|++.|+++.|++.|+   +.|+.+.|+.+|+      .++++.+..+|++|+++||.+|+|    +|.+|+||+.++
T Consensus        65 l~~i~k~f~~q~dld~A~---k~i~~g~w~~~~l------~~~~~~~~~~f~~Hi~ryLr~fl~dsgf~I~~c~rYs~e~  135 (453)
T KOG2589|consen   65 LKIITKYFIEQTDLDQAI---KNILQGRWLDHLL------RNLNKTSLKAFTDHIVRYLRMFLPDSGFEICSCNRYSSES  135 (453)
T ss_pred             HHHHHHHHHHhhhHHHHH---HHHHhcchhhHHH------hhCChhHHHHHHHHHHHHHHHhcccCCceEeecccccccc
Confidence            588999999999999999   9999999999999      577999999999999999999999    999999999998


Q ss_pred             CcCeeEEeCccCCCCCeEEeceeEEeecCHHHHHHHHhcCCCCceeeeccccCcceeecCccccCCCCCCCCeEEEEcCc
Q psy8426          77 NRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRPNCRFVATER  156 (278)
Q Consensus        77 ~~G~Gl~A~r~I~~Ge~I~e~~G~i~~l~~~e~~~~~~~~~ndfsi~~s~~~~~~~l~~g~arfiNHSC~PN~~~~~~g~  156 (278)
                      +.|+.|+|++.|.+||.|..++|+|+++++.++..++..+.|||+||||++++++++|+|||+||||+|.|||+|+..|.
T Consensus       136 ~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g~nDFSvmyStRk~caqLwLGPaafINHDCrpnCkFvs~g~  215 (453)
T KOG2589|consen  136 QNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGGGNDFSVMYSTRKRCAQLWLGPAAFINHDCRPNCKFVSTGR  215 (453)
T ss_pred             CCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhccCCceeeeeecccchhhheeccHHhhcCCCCCCceeecCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eEEEEEEecCCCCCCeeeeecCcCCCCCcceeecCcCCCCcccccccCCCCCCCC--CCCCccccchhHHHHHhhHhhH-
Q psy8426         157 DTACVKVLRDIEQGEEITCFYGEDFFGDKNCLCECDTCEIRMKGAFAQSSVEPQT--TQPSRYCLRDTDMRLNKRKLHK-  233 (278)
Q Consensus       157 ~~~~i~A~RdI~~GEEITi~Y~~~~~~~~~c~C~c~~C~~~~~g~~~~~~~~~~~--~~~~~y~lr~~~~r~~r~k~~~-  233 (278)
                      .+++|+++|||+||||||+.||++|||..++.|.|.+|++.+.|+|+.....+..  ....+|.+++++.|++|-+... 
T Consensus       216 ~tacvkvlRDIePGeEITcFYgs~fFG~~N~~CeC~TCER~g~gaFk~~~g~~s~~p~~s~ky~lret~~r~nr~~~s~~  295 (453)
T KOG2589|consen  216 DTACVKVLRDIEPGEEITCFYGSGFFGENNEECECVTCERRGTGAFKKLAGLPSCSPKISSKYSLRETDPRSNRYKISGE  295 (453)
T ss_pred             ceeeeehhhcCCCCceeEEeecccccCCCCceeEEeecccccccchhhccCCCCCCCcccccchhhhhhhhhhhheeccc
Confidence            8999999999999999999999999999999999999999999999987554432  3467999999999999988775 


Q ss_pred             ---HHhhhhhccCCCCCCCCCCCCccceee
Q psy8426         234 ---KLNRLLLASDKNDTNSSDNSSKYSLVQ  260 (278)
Q Consensus       234 ---~~~~~~~~~~~~~~~s~~~~~~~~~~~  260 (278)
                         .+..+..+.+.+++.++...+.++|+.
T Consensus       296 ~~~~l~~~s~~~~~~~~~~s~~~~~~~L~~  325 (453)
T KOG2589|consen  296 DSSNLNSWSSSGELDDASSSELDEEFSLFI  325 (453)
T ss_pred             ccccCCccccCCCCCCCCchhhccccceec
Confidence               455566777777777777777777764

>KOG4442\|consensus	Back alignment and domain information

>KOG1080\|consensus	Back alignment and domain information

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

>KOG1082\|consensus	Back alignment and domain information

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Back alignment and domain information

>KOG1083\|consensus	Back alignment and domain information

>KOG1079\|consensus	Back alignment and domain information

>KOG1085\|consensus	Back alignment and domain information

>COG2940 Proteins containing SET domain [General function prediction only]	Back alignment and domain information

>KOG1141\|consensus	Back alignment and domain information

>KOG2461\|consensus	Back alignment and domain information

>KOG1081\|consensus	Back alignment and domain information

>KOG2084\|consensus	Back alignment and domain information

>KOG1337\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		278
3s8p_A		273	Crystal Structure Of The Set Domain Of Human Histon		3e-52
3rq4_A		247	Crystal Structure Of Suppressor Of Variegation 4-20		4e-50

>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human Histone-Lysine N- Methyltransferase Suv420h1 In Complex With S-Adenosyl-L-Methionine Length = 273

Back alignment and structure

Iteration: 1

Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 96/138 (69%), Positives = 111/138 (80%), Gaps = 1/138 (0%) Query: 65 ELKPCYRYSLEGNRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMY 124 E+ PC RYS E N GA+IVAT++W++ND I LVGCIAEL++ EE LL G NDFSV Y Sbjct: 134 EILPCNRYSSEQN-GAKIVATKEWKRNDKIELLVGCIAELSEIEENXLLRHGENDFSVXY 192 Query: 125 SCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFGD 184 S RKNCAQLWLGPAA+INHDCRPNC+FV+T RDTACVK LRDIE GEEI+C+YG+ FFG+ Sbjct: 193 STRKNCAQLWLGPAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGE 252 Query: 185 KNCLCECDTCEIRMKGAF 202 N CEC TCE R GAF Sbjct: 253 NNEFCECYTCERRGTGAF 270

PyMOL of 3s8p

>pdb|3RQ4|A Chain A, Crystal Structure Of Suppressor Of Variegation 4-20 Homolog 2 Length = 247

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		278
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	3e-49
3s8p_A		273	Histone-lysine N-methyltransferase SUV420H1; SET d	6e-49
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	1e-16
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	3e-09
2qpw_A		149	PR domain zinc finger protein 2; methyltransferase	1e-07
3ep0_A		170	PR domain zinc finger protein 12; PR domain-contai	3e-07
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	4e-07
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	7e-07
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	8e-07
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	8e-07
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	3e-06
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	6e-06
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	8e-06
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	1e-05
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	4e-05
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	4e-05
3dal_A		196	PR domain zinc finger protein 1; methyltransferase	5e-05
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	1e-04
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	5e-04
3db5_A		151	PR domain zinc finger protein 4; methyltransferase	6e-04
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	6e-04

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247	Back alignment and structure

 Score =  162 bits (411), Expect = 3e-49
 Identities = 93/159 (58%), Positives = 115/159 (72%), Gaps = 6/159 (3%)

Query: 54  HRYSYRIQYLP----ELKPCYRYSLEGNRGARIVATRKWEKNDNIAYLVGCIAELTKEEE 109
           H Y Y   +LP     + PC RYS+E   GA+IV+TR W+KN+ +  LVGCIAEL +E +
Sbjct: 91  HVYRYLRAFLPESGFTILPCTRYSMET-NGAKIVSTRAWKKNEKLELLVGCIAEL-READ 148

Query: 110 KRLLHTGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLRDIEQ 169
           + LL  G NDFS+MYS RK  AQLWLGPAA+INHDC+PNC+FV  + + ACVKVLRDIE 
Sbjct: 149 EGLLRAGENDFSIMYSTRKRSAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEP 208

Query: 170 GEEITCFYGEDFFGDKNCLCECDTCEIRMKGAFAQSSVE 208
           G+E+TCFYGE FFG+KN  CEC TCE + +GAF     E
Sbjct: 209 GDEVTCFYGEGFFGEKNEHCECHTCERKGEGAFRTRPRE 247

PyMOL of 3rq4

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261	Back alignment and structure

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149	Back alignment and structure

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300	Back alignment and structure

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166	Back alignment and structure

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		278
3s8p_A		273	Histone-lysine N-methyltransferase SUV420H1; SET d	100.0
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	100.0
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	99.94
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	99.93
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	99.93
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	99.93
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	99.91
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	99.91
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	99.91
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	99.91
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	99.9
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	99.9
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	99.9
2qpw_A		149	PR domain zinc finger protein 2; methyltransferase	99.84
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.84
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	99.81
3ep0_A		170	PR domain zinc finger protein 12; PR domain-contai	99.62
3db5_A		151	PR domain zinc finger protein 4; methyltransferase	99.6
3dal_A		196	PR domain zinc finger protein 1; methyltransferase	99.52
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	99.52
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	99.5
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	99.46
3ray_A		237	PR domain-containing protein 11; structural genomi	99.43
3ihx_A		152	PR domain zinc finger protein 10; PRDM10, methyltr	99.37
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	97.98
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	97.65
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	97.39

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=2.7e-48  Score=351.26  Aligned_cols=194  Identities=54%  Similarity=0.970  Sum_probs=181.4

Q ss_pred             CHHHHHHHhhcCCHHHHHHHhhccCCCccHHHHHHHHHhhcCCchhhhhhHHHHHHhhhhhhcC----CCcccceeeecC
Q psy8426           1 MKSIVHNLILHVPIQLACHLLNKLNPSFWAFCVQALLAQRFNIGRILDMGTQHHRYSYRIQYLP----ELKPCYRYSLEG   76 (278)
Q Consensus         1 ~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~f~~h~~~yl~~~~~----~i~~~~Rys~~~   76 (278)
                      |+++|++|++++|+++||   ++|++++|+++|+      .++++.|++.|++|+++||.+|+|    +|.+|+||+.+.
T Consensus        75 ~~~~~~~~~~~~~~~~a~---~~l~~~~~~~~~f------~~~~~~~~~~f~~h~~ryl~~~~~~~gfeV~~~~ry~~e~  145 (273)
T 3s8p_A           75 LKEVIERFKKDEHLEKAF---KCLTSGEWARHYF------LNKNKMQEKLFKEHVFIYLRMFATDSGFEILPCNRYSSEQ  145 (273)
T ss_dssp             HHHHHHHHHHHCCHHHHH---HHHSCSHHHHHHH------TTCCHHHHHHHHHHHHHHHHTTSGGGCEEEEEECCCTTCS
T ss_pred             HHHHHHHHHHcCCHHHHH---HHHhcCcchhhhh------cccCHHHHHHHHHHHHHhhhccCCCCCceEEeccceeecC
Confidence            578999999999999999   9999999999998      578999999999999999999999    999999999985


Q ss_pred             CcCeeEEeCccCCCCCeEEeceeEEeecCHHHHHHHHhcCCCCceeeeccccCcceeecCccccCCCCCCCCeEEEEcCc
Q psy8426          77 NRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRPNCRFVATER  156 (278)
Q Consensus        77 ~~G~Gl~A~r~I~~Ge~I~e~~G~i~~l~~~e~~~~~~~~~ndfsi~~s~~~~~~~l~~g~arfiNHSC~PN~~~~~~g~  156 (278)
                       +||||||+++|++|++|.+|.|+++.+++.++..+.....++|+++++.+..++.+++|+||||||||.|||.++..+.
T Consensus       146 -~G~GlfA~~~I~kGe~I~EY~Geii~~~e~ee~~~~~~~~~dF~i~~s~~~~~a~~~g~~arfiNHSC~PN~~~~~~~~  224 (273)
T 3s8p_A          146 -NGAKIVATKEWKRNDKIELLVGCIAELSEIEENMLLRHGENDFSVMYSTRKNCAQLWLGPAAFINHDCRPNCKFVSTGR  224 (273)
T ss_dssp             -SEEEEEESSCBCTTCEEEEEEEEEEEECHHHHHHHCCTTTSCTTEEEETTTTEEEEEESGGGGCEECSSCSEEEEEEET
T ss_pred             -CCceEEECCccCCCCEEEEEEEEEccccHHHHHHHhhhcccccceeccccccccceecchHHhhCCCCCCCeEEEEcCC
Confidence             5999999999999999999999999999998888877789999999998888899999999999999999999988887


Q ss_pred             eEEEEEEecCCCCCCeeeeecCcCCCCCcceeecCcCCCCcccccccC
Q psy8426         157 DTACVKVLRDIEQGEEITCFYGEDFFGDKNCLCECDTCEIRMKGAFAQ  204 (278)
Q Consensus       157 ~~~~i~A~RdI~~GEEITi~Y~~~~~~~~~c~C~c~~C~~~~~g~~~~  204 (278)
                      .++.|+|+|||++|||||++|++.+|+.+.+.|.|..|...+.|+|..
T Consensus       225 ~~i~i~A~RdI~~GEELt~~Y~~~~~~~~~f~C~C~~c~crG~g~f~s  272 (273)
T 3s8p_A          225 DTACVKALRDIEPGEEISCYYGDGFFGENNEFCECYTCERRGTGAFKS  272 (273)
T ss_dssp             TEEEEEESSCBCTTCBCEECCCTTTTSGGGTTCCCHHHHHHTCGGGCC
T ss_pred             CEEEEEECceeCCCCEEEEecCchhcCCCCeEEECCCCcCCCCCCCcC
Confidence            789999999999999999999999999888888888888877777753

PyMOL of 3s8p

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}	Back alignment and structure

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}	Back alignment and structure

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}	Back alignment and structure

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*	Back alignment and structure

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}	Back alignment and structure

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		278
d2f69a2		171	b.85.7.1 (A:194-364) Histone H3 K4-specific methyl	4e-13
d2g46a1		119	b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth	2e-12
d1mvha_		269	b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S	1e-05
d1ml9a_		284	b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T	4e-04

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171	Back information, alignment and structure


class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (154), Expect = 4e-13
 Identities = 22/139 (15%), Positives = 38/139 (27%), Gaps = 10/139 (7%)

Query: 77  NRGARIVATRKWEKNDNIAYLVGCI------AELTKEEEKRLLHTGLNDFSVMYSCRKNC 130
           + G  + +      N  +++  G                   L         +     + 
Sbjct: 32  SAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHV 91

Query: 131 AQLWLGPAAYINHDCRPNCRFVATERD----TACVKVLRDIEQGEEITCFYGEDFFGDKN 186
           ++         NH   PNC +            C++ LR +E  EE+T  YG D      
Sbjct: 92  SKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGK 151

Query: 187 CLCECDTCEIRMKGAFAQS 205
              E          AF  +
Sbjct: 152 SGPEAPEWYQVELKAFQAT 170

PyMOL of d2f69a2

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		278
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	99.88
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	99.86
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	99.86
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	99.86
d2h2ja2		261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	98.77
d2h2ja2		261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	87.15

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Viral histone H3 Lysine 27 Methyltransferase
domain: Viral histone H3 Lysine 27 Methyltransferase
species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]

Probab=99.88  E-value=4.4e-23  Score=162.70  Aligned_cols=101  Identities=26%  Similarity=0.344  Sum_probs=79.3

Q ss_pred             CCcCeeEEeCccCCCCCeEEeceeEEeecCHHHHHHHHhcCCCCceeeeccccCcceeecCccccCCCCCCCCeEEEEc-
Q psy8426          76 GNRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRPNCRFVAT-  154 (278)
Q Consensus        76 ~~~G~Gl~A~r~I~~Ge~I~e~~G~i~~l~~~e~~~~~~~~~ndfsi~~s~~~~~~~l~~g~arfiNHSC~PN~~~~~~-  154 (278)
                      +.+|+||||+++|++|++|.+|.|.+....+...  .    ..+|.+..   .+...+.++.+||+||||.|||.+... 
T Consensus        12 ~~~G~GvfA~~~i~~g~~i~~~~g~~~~~~~~~~--~----~~~y~~~~---~~~~~~~~~~~~~~NHsc~pN~~~~~~~   82 (119)
T d2g46a1          12 PLGGYGVFARKSFEKGELVEECLCIVRHNDDWGT--A----LEDYLFSR---KNMSAMALGFGAIFNHSKDPNARHELTA   82 (119)
T ss_dssp             SSCSSCEEECSCBCTTCCCEEEECEEECSTHHHH--H----TCSSEEEE---TTEEEECCSTTSSCCCCSSCCCEEEECS
T ss_pred             CCCceEEEECchhhCCCEEecccEEEecHHHHhh--h----hhceeeec---ccccceecCCeEEEEecCCcCceEEEEC
Confidence            3479999999999999999999998875443322  1    23333222   233556778999999999999998655 


Q ss_pred             CceEEEEEEecCCCCCCeeeeecCcCCCCCc
Q psy8426         155 ERDTACVKVLRDIEQGEEITCFYGEDFFGDK  185 (278)
Q Consensus       155 g~~~~~i~A~RdI~~GEEITi~Y~~~~~~~~  185 (278)
                      +..++.++|+|||++|||||++|+++||+..
T Consensus        83 ~~~~~~~~A~rdI~~GEEL~~dYg~~yw~~r  113 (119)
T d2g46a1          83 GLKRMRIFTIKPIAIGEEITISYGDDYWLSR  113 (119)
T ss_dssp             SSSEEEEECSSCBCTTEEECCCCCSSSCCSS
T ss_pred             CCCEEEEEECcccCCCCEEEEecChhHhccC
Confidence            4467899999999999999999999999853

PyMOL of d2g46a1

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure