Psyllid ID: psy8502

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MVHYRLPSEYYHIDLSSRDNYGLNTFLLQQGAEDMGLIIKTTDTVEMGGNILPDLNTSGRLTGTLDLLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKSLNH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccEEEcccccccccccEEEEEEcccccEEEEEccccHHccccccccccccccccccccccccccccccccccccccccHccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mvhyrlpseyyhidlssrdnygLNTFLLQQGAedmgliikttdtvemggnilpdlntsgrltgtldllpalthnltlnttsgvpellyrhspgvtITFIIGYLAVFLIGLVGNSLVIAVVIrsprmrnvtNYFIVNLAVADMLVITLCLPATLMANIYVHfdlkslnh
Flexible Loop (DISEMBL)
MVHYRLPSEYYHIDLSSRDNYGLNTFLLQQGAEDMGLIIKTTDTVEMGGNILPDLNTSGRLTGTLDLLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVirsprmrnVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKSLNH
Low Complexity Region (SEG)
MVHYRLPSEYYHIDLSSRDNYGLNTFLLQQGAEDMGLIIKTTDTVEMGGNILPDLNTSGRLTGTLDLLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKSLNH
Disordered region (IsUnstruct)
****RLPSEYYHIDLSSRDNYGLNTFLLQQGAEDMGLIIKTTDTVEMGGNILPDLNTSGRLTGTLDLLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDL*****
Disordered Region (DISOPRED)
********************************EDMGLIIKTTDTVEM***IL****TSGRLTGTLDLLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKSLNH
Disordered Region (DISEMBL)
MVHYRLPSEYYHIDLSSRDNYGLNTFLLQQGAEDMGLIIKTTDTVEMGGNILPDLNTSGRLTGTLDLLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKSLNH
Disordered Region (DISPRO)
**HYRLPSEYYHIDLSSRDNYGLNTFLLQQGAEDMGLIIKTTDTVEMGGNILPDLNTSGRLTGTLDLLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVHYRLPSEYYHIDLSSRDNYGLNTFLLQQGAEDMGLIIKTTDTVEMGGNILPDLNTSGRLTGTLDLLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKSLNH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
O02836	382	Neuropeptide Y receptor t	no	N/A	0.357	0.157	0.633	2e-13
Q9Y5X5	522	Neuropeptide FF receptor	yes	N/A	0.416	0.134	0.457	2e-13
P79113	384	Neuropeptide Y receptor t	yes	N/A	0.357	0.156	0.6	3e-13
Q9Z2D5	381	Neuropeptide Y receptor t	no	N/A	0.357	0.157	0.616	3e-13
P97295	381	Neuropeptide Y receptor t	yes	N/A	0.357	0.157	0.616	4e-13
Q5IS62	381	Neuropeptide Y receptor t	no	N/A	0.357	0.157	0.6	4e-13
P49146	381	Neuropeptide Y receptor t	no	N/A	0.357	0.157	0.6	4e-13
P56718	416	Orexin receptor type 1 OS	no	N/A	0.351	0.141	0.610	4e-13
P58307	416	Orexin receptor type 1 OS	no	N/A	0.351	0.141	0.610	4e-13
Q9DDN6	385	Neuropeptide Y receptor t	no	N/A	0.363	0.158	0.590	5e-13

>sp|O02836|NPY2R_PIG Neuropeptide Y receptor type 2 OS=Sus scrofa GN=NPY2R PE=2 SV=2

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 46/60 (76%)

Query: 94  VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATL 153
           V I  I+ Y ++ L+G+VGNSLVI VVI+   MR VTN+FI NLAVAD+LV TLCLP TL
Sbjct: 50  VQIILILAYCSIILLGVVGNSLVIHVVIKFKSMRTVTNFFIANLAVADLLVNTLCLPFTL 109

Receptor for neuropeptide Y and peptide YY.
Sus scrofa (taxid: 9823)

>sp|Q9Y5X5|NPFF2_HUMAN Neuropeptide FF receptor 2 OS=Homo sapiens GN=NPFFR2 PE=1 SV=2

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 47/70 (67%)

Query: 88  YRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITL 147
           Y H P V   FII Y  +F + ++GN++V  +V+R+  M  VTN FI+NLA++D+LV   
Sbjct: 140 YLHQPQVAAIFIISYFLIFFLCMMGNTVVCFIVMRNKHMHTVTNLFILNLAISDLLVGIF 199

Query: 148 CLPATLMANI 157
           C+P TL+ NI
Sbjct: 200 CMPITLLDNI 209

Receptor for NPAF (A-18-F-amide) and NPFF (F-8-F-amide) neuropeptides, also known as morphine-modulating peptides. Can also be activated by a variety of naturally occurring or synthetic FMRF-amide like ligands. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Homo sapiens (taxid: 9606)

>sp|P79113|NPY2R_BOVIN Neuropeptide Y receptor type 2 OS=Bos taurus GN=NPY2R PE=2 SV=1

 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 46/60 (76%)

Query: 94  VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATL 153
           V +  I+ Y ++ L+G++GNSLVI VVI+   MR VTN+FI NLAVAD+LV TLCLP TL
Sbjct: 52  VQVVLILAYCSIILLGVIGNSLVIHVVIKFKSMRTVTNFFIANLAVADLLVNTLCLPFTL 111

Receptor for neuropeptide Y and peptide YY.

Bos taurus (taxid: 9913)

>sp|Q9Z2D5|NPY2R_CAVPO Neuropeptide Y receptor type 2 OS=Cavia porcellus GN=NPY2R PE=3 SV=1

 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 46/60 (76%)

Query: 94  VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATL 153
           V +  I+ Y ++ L+G+VGNSLVI VVI+   MR VTN+FI NLAVAD+LV TLCLP TL
Sbjct: 50  VRVVLILAYCSIILLGVVGNSLVIHVVIKFKSMRTVTNFFIANLAVADLLVNTLCLPFTL 109

Receptor for neuropeptide Y and peptide YY.

Cavia porcellus (taxid: 10141)

>sp|P97295|NPY2R_MOUSE Neuropeptide Y receptor type 2 OS=Mus musculus GN=Npy2r PE=2 SV=2

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 46/60 (76%)

Query: 94  VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATL 153
           V +  I+ Y ++ L+G+VGNSLVI VVI+   MR VTN+FI NLAVAD+LV TLCLP TL
Sbjct: 49  VQVILILAYCSIILLGVVGNSLVIHVVIKFKSMRTVTNFFIANLAVADLLVNTLCLPFTL 108

Receptor for neuropeptide Y and peptide YY.

Mus musculus (taxid: 10090)

>sp|Q5IS62|NPY2R_PANTR Neuropeptide Y receptor type 2 OS=Pan troglodytes GN=NPY2R PE=2 SV=1

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 46/60 (76%)

Query: 94  VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATL 153
           V +  I+ Y ++ L+G++GNSLVI VVI+   MR VTN+FI NLAVAD+LV TLCLP TL
Sbjct: 49  VQVVLILAYCSIILLGVIGNSLVIHVVIKFKSMRTVTNFFIANLAVADLLVNTLCLPFTL 108

Receptor for neuropeptide Y and peptide YY.

Pan troglodytes (taxid: 9598)

>sp|P49146|NPY2R_HUMAN Neuropeptide Y receptor type 2 OS=Homo sapiens GN=NPY2R PE=2 SV=1

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 46/60 (76%)

Query: 94  VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATL 153
           V +  I+ Y ++ L+G++GNSLVI VVI+   MR VTN+FI NLAVAD+LV TLCLP TL
Sbjct: 49  VQVVLILAYCSIILLGVIGNSLVIHVVIKFKSMRTVTNFFIANLAVADLLVNTLCLPFTL 108

Receptor for neuropeptide Y and peptide YY. The rank order of affinity of this receptor for pancreatic polypeptides is PYY > NPY > PYY (3-36) > NPY (2-36) > [Ile-31, Gln-34] PP > [Leu-31, Pro-34] NPY > PP, [Pro-34] PYY and NPY free acid.

Homo sapiens (taxid: 9606)

>sp|P56718|OX1R_RAT Orexin receptor type 1 OS=Rattus norvegicus GN=Hcrtr1 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 99  IIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANI 157
           I  Y+AVFLI LVGN+LV   V R+  MR VTNYFIVNL++AD+LV  +CLPA+L+ +I
Sbjct: 50  IAAYVAVFLIALVGNTLVCLAVWRNHHMRTVTNYFIVNLSLADVLVTAICLPASLLVDI 108

Moderately selective excitatory receptor for orexin-A and, with a lower affinity, for orexin-B neuropeptide. Seems to be exclusively coupled to the G(q) subclass of heteromeric G proteins, which activates the phospholipase C mediated signaling cascade.

Rattus norvegicus (taxid: 10116)

>sp|P58307|OX1R_MOUSE Orexin receptor type 1 OS=Mus musculus GN=Hcrtr1 PE=2 SV=3

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 99  IIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANI 157
           I  Y+AVFLI LVGN+LV   V R+  MR VTNYFIVNL++AD+LV  +CLPA+L+ +I
Sbjct: 50  IAAYVAVFLIALVGNTLVCLAVWRNHHMRTVTNYFIVNLSLADVLVTAICLPASLLVDI 108

Moderately selective excitatory receptor for orexin-A and, with a lower affinity, for orexin-B neuropeptide. Seems to be exclusively coupled to the G(q) subclass of heteromeric G proteins, which activates the phospholipase C mediated signaling cascade.

Mus musculus (taxid: 10090)

>sp|Q9DDN6|NPY2R_CHICK Neuropeptide Y receptor type 2 OS=Gallus gallus GN=NPY2R PE=3 SV=1

 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 46/61 (75%)

Query: 94  VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATL 153
           V I  I  Y ++ L+G++GNSLVI V+I+   MR VTN+FI NLAVAD+LV TLCLP TL
Sbjct: 53  VQIILIFAYCSIILLGVIGNSLVIHVIIKFKSMRTVTNFFIANLAVADLLVNTLCLPFTL 112

Query: 154 M 154
           +
Sbjct: 113 V 113

Receptor for neuropeptide Y and peptide YY.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
91091632	436	PREDICTED: similar to SIFamide receptor	0.535	0.206	0.641	2e-24
347969700	862	AGAP003335-PA [Anopheles gambiae str. PE	0.648	0.126	0.522	2e-24
350397193	483	PREDICTED: neuropeptide FF receptor 2-li	0.928	0.322	0.411	4e-24
357611925	175	putative SIFamide receptor [Danaus plexi	0.642	0.617	0.557	5e-24
193659704	440	PREDICTED: neuropeptide FF receptor 2-li	0.488	0.186	0.670	5e-24
383857307	468	PREDICTED: neuropeptide FF receptor 2-li	0.958	0.344	0.423	1e-23
340726492	483	PREDICTED: neuropeptide FF receptor 2-li	0.928	0.322	0.4	2e-23
195053868	771	GH18883 [Drosophila grimshawi] gi|193895	0.434	0.094	0.684	3e-23
157111907	151	hypothetical protein AaeL_AAEL005994 [Ae	0.809	0.900	0.441	4e-23
402232702	465	TPA_inf: SIFamide receptor [Bombyx mori]	0.744	0.268	0.507	4e-23

>gi|91091632|ref|XP_970225.1| PREDICTED: similar to SIFamide receptor [Tribolium castaneum] gi|270001267|gb|EEZ97714.1| hypothetical protein TcasGA2_TC011156 [Tribolium castaneum] gi|402232706|tpg|DAA35194.1| TPA_inf: SIFamide receptor, partial [Tribolium castaneum]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 70/92 (76%), Gaps = 2/92 (2%)

Query: 74  NLTLNTT--SGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTN 131
           N TLN T  + VPEL YRHS  +T  + + YL VF +G+VGN  VIAVV RSPRMR VTN
Sbjct: 63  NATLNATETAFVPELFYRHSMAMTAVYCVAYLLVFAVGIVGNFFVIAVVFRSPRMRTVTN 122

Query: 132 YFIVNLAVADMLVITLCLPATLMANIYVHFDL 163
           +FIVNLAVAD+LVI  CLPATLM+NI+V + L
Sbjct: 123 FFIVNLAVADILVIVFCLPATLMSNIFVPWVL 154

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969700|ref|XP_314231.4| AGAP003335-PA [Anopheles gambiae str. PEST] gi|333469231|gb|EAA09601.4| AGAP003335-PA [Anopheles gambiae str. PEST]

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/113 (52%), Positives = 76/113 (67%), Gaps = 4/113 (3%)

Query: 50  NILPDLNTSGRLTGTLDLLPALTHNLTLNTTSGVP----ELLYRHSPGVTITFIIGYLAV 105
           +ILP +   GR  G   L  + + N+ +   +  P    EL YRHS  +T  + + Y  V
Sbjct: 8   SILPAVRIIGRHHGEGALCVSSSPNVAVGNDTAGPFEEYELFYRHSYTMTAVYCVAYFIV 67

Query: 106 FLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIY 158
           F++GLVGNS VIAVV R+PRMR VTN+FIVNLAVAD+LVI  CLPATLM+NI+
Sbjct: 68  FIVGLVGNSFVIAVVFRAPRMRTVTNFFIVNLAVADVLVIVFCLPATLMSNIF 120

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397193|ref|XP_003484801.1| PREDICTED: neuropeptide FF receptor 2-like [Bombus impatiens]

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 94/175 (53%), Gaps = 19/175 (10%)

Query: 1   MVHYRLP-SEYYHIDLSSRDNYG-----------LNTFLLQQGAEDMGLIIKTTDTVEMG 48
           M   RLP SE + ID   R N G             T  L Q   D+G  +       + 
Sbjct: 26  MASLRLPDSEEFDIDTRRRSNNGNIPPTTVSAIPQTTGTLLQMRNDLGDYLNNLIAEAIT 85

Query: 49  GNILPDLNTSGRLTGTLDLLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLI 108
            N    +   G L          +    L+T   +P+ LYRHS  ++  + + Y+ VF++
Sbjct: 86  TNPRTSMEEQGGLLNA-------SKTANLSTAEQIPDRLYRHSMAMSAVYCVAYVLVFVV 138

Query: 109 GLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDL 163
           GL+GNS VIAVV RSPRMR VTN+FIVNLAVAD+LVI  CLPATLM+NI+V + L
Sbjct: 139 GLIGNSFVIAVVYRSPRMRTVTNFFIVNLAVADVLVIVFCLPATLMSNIFVPWFL 193

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357611925|gb|EHJ67721.1| putative SIFamide receptor [Danaus plexippus]

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 81/113 (71%), Gaps = 5/113 (4%)

Query: 49  GNILPDLNTSGRLTGTLDLLPALTHNLTLNTTS-GVP-ELLYRHSPGVTITFIIGYLAVF 106
            ++LPDL     L+  +D   +L  N+T+N +  G+  E +YRHS  +T  + I YL VF
Sbjct: 61  NSVLPDLEP---LSTHMDERHSLLLNITMNRSDLGLESEFMYRHSGAMTAVYCIAYLLVF 117

Query: 107 LIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYV 159
           ++GLVGN  VIAVV RSPRMR VTN+FIVNLAVAD+LVI  CLPATLM+NI+V
Sbjct: 118 VVGLVGNCFVIAVVYRSPRMRTVTNFFIVNLAVADILVIVFCLPATLMSNIFV 170

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193659704|ref|XP_001947491.1| PREDICTED: neuropeptide FF receptor 2-like [Acyrthosiphon pisum]

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 65/82 (79%)

Query: 85  ELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLV 144
           EL YRHSP +T  +   Y  VFL+GLVGN LV++VV RSPRMRNVTNYFIVNLAVAD+LV
Sbjct: 79  ELWYRHSPAMTAVYCFAYTMVFLVGLVGNLLVVSVVCRSPRMRNVTNYFIVNLAVADILV 138

Query: 145 ITLCLPATLMANIYVHFDLKSL 166
           +  CLPATL++NIYV + L S 
Sbjct: 139 LVFCLPATLLSNIYVPWILGSW 160

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857307|ref|XP_003704146.1| PREDICTED: neuropeptide FF receptor 2-like [Megachile rotundata]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 102/170 (60%), Gaps = 9/170 (5%)

Query: 1   MVHYRLP-SEYYHIDLSSRDNYG-LNTFLLQQGAEDMGLIIK-TTDTVEMGGNILPDLNT 57
           M   RLP SE + +D   R N G + T  +       G +++   D  +   N++ +  T
Sbjct: 11  MASLRLPDSEEFDVDTRRRSNNGNVQTTTVSPVQPATGTLLQMRNDLGDYLNNLIAEAIT 70

Query: 58  SGRLTGTLD----LLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGN 113
           +   T   +    L  + T NL+  T   +P+ LYRHS  ++  + + Y+ VF++GL+GN
Sbjct: 71  TSPRTSMDEHGGLLNASKTDNLS--TAEQIPDRLYRHSMAMSAVYCVAYVLVFVVGLIGN 128

Query: 114 SLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDL 163
           S VIAVV RSPRMR VTN+FIVNLAVAD+LVI  CLPATLM+NI+V + L
Sbjct: 129 SFVIAVVYRSPRMRTVTNFFIVNLAVADVLVIVFCLPATLMSNIFVPWFL 178

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726492|ref|XP_003401591.1| PREDICTED: neuropeptide FF receptor 2-like [Bombus terrestris]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 94/175 (53%), Gaps = 19/175 (10%)

Query: 1   MVHYRLP-SEYYHIDLSSRDNYG-----------LNTFLLQQGAEDMGLIIKTTDTVEMG 48
           M   RLP S+ + +D   R N G             T  L Q   D+G  +       + 
Sbjct: 26  MASLRLPDSDEFDVDTRRRSNNGNVPSTTVSAIPQTTGTLLQMRNDLGDYLNNLIAEAIT 85

Query: 49  GNILPDLNTSGRLTGTLDLLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLI 108
            N    +   G L          +    L+T   +P+ LYRHS  ++  + + Y+ VF++
Sbjct: 86  TNPRTSMEEQGGLLNA-------SKTANLSTAEQIPDRLYRHSMAMSAVYCVAYVLVFVV 138

Query: 109 GLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDL 163
           GL+GNS VIAVV RSPRMR VTN+FIVNLAVAD+LVI  CLPATLM+NI+V + L
Sbjct: 139 GLIGNSFVIAVVYRSPRMRTVTNFFIVNLAVADVLVIVFCLPATLMSNIFVPWFL 193

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195053868|ref|XP_001993848.1| GH18883 [Drosophila grimshawi] gi|193895718|gb|EDV94584.1| GH18883 [Drosophila grimshawi]

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/73 (68%), Positives = 63/73 (86%)

Query: 87  LYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVIT 146
           +YRHS  ++I + + Y+AVFLIGL+GNS VIAVV+R+PRMR VTNYFIVNLA+AD+LVI 
Sbjct: 203 IYRHSLAMSIVYCVAYIAVFLIGLIGNSFVIAVVLRAPRMRTVTNYFIVNLAIADILVIV 262

Query: 147 LCLPATLMANIYV 159
            CLPATL+ NI+V
Sbjct: 263 FCLPATLIGNIFV 275

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157111907|ref|XP_001657350.1| hypothetical protein AaeL_AAEL005994 [Aedes aegypti] gi|108878249|gb|EAT42474.1| AAEL005994-PA [Aedes aegypti]

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 9/145 (6%)

Query: 28  LQQGAEDMGLIIKTTDTVEMGGNILPDLNTSGRLTGTLDLLPALT-HNLTLNTTSG---- 82
           L  G     + I T  +V + G I P  +    L+  + + P  + H+L    T+     
Sbjct: 5   LVTGRHRSPVCIFTIASVFIFGPIHPR-SERRSLSKFITVFPVYSLHSLQAQETAANDTG 63

Query: 83  ---VPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAV 139
                EL YRHS  +T  + + Y  VF++GL+GNS VIAVV R+PRMR VTN+FIVNLA+
Sbjct: 64  PYEEYELFYRHSSTMTAVYCVAYFVVFIVGLIGNSFVIAVVFRAPRMRTVTNFFIVNLAL 123

Query: 140 ADMLVITLCLPATLMANIYVHFDLK 164
           AD+LVI  CLPATLM+NI+VH  L+
Sbjct: 124 ADVLVIVFCLPATLMSNIFVHQWLR 148

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|402232702|tpg|DAA35192.1| TPA_inf: SIFamide receptor [Bombyx mori]

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 86/134 (64%), Gaps = 9/134 (6%)

Query: 38  IIKTTDTVEMGGNILPDLNTSGRLTGTLDL----LPALTHNLTLNTTS-GVPELLYRHSP 92
           II   +T  +  ++LPD+     L+  +DL     P+   N TLN +  G  E +YRHS 
Sbjct: 55  IIDAFNTRFVENSVLPDMEP---LSSHMDLEERHYPS-RMNGTLNRSDFGGDEFMYRHSG 110

Query: 93  GVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPAT 152
            +T  +   YL VFL+GLVGN  VIAVV RSPRMR VTN+FIVNLA AD+LVI  CLPAT
Sbjct: 111 AMTAVYCAAYLLVFLVGLVGNCFVIAVVYRSPRMRTVTNFFIVNLAFADILVIVFCLPAT 170

Query: 153 LMANIYVHFDLKSL 166
           LM+NI+V + L  L
Sbjct: 171 LMSNIFVPWVLGWL 184

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
FB|FBgn0038880	758	SIFR "SIFamide receptor" [Dros	0.434	0.096	0.657	7.3e-22
ZFIN|ZDB-GENE-060526-183	422	npffr2.1 "neuropeptide FF rece	0.470	0.187	0.455	4.5e-15
UNIPROTKB|F1NVD9	422	NPFFR2 "Uncharacterized protei	0.470	0.187	0.481	1.3e-14
ZFIN|ZDB-GENE-070705-159	438	npffr2.2 "neuropeptide FF rece	0.470	0.180	0.455	2.3e-14
ZFIN|ZDB-GENE-060526-110	480	npffr1l2 "neuropeptide FF rece	0.613	0.214	0.422	2.8e-14
UNIPROTKB|F1SUD0	432	NPFFR1 "Uncharacterized protei	0.416	0.162	0.514	2.8e-14
ZFIN|ZDB-GENE-091118-18	306	npffr1l1 "neuropeptide FF rece	0.416	0.228	0.514	3e-14
ZFIN|ZDB-GENE-040924-8	384	npy2r "neuropeptide Y receptor	0.392	0.171	0.560	7.3e-14
RGD|620475	381	Npy2r "neuropeptide Y receptor	0.357	0.157	0.616	9.2e-14
UNIPROTKB|F1RYR8	382	NPY2R "Neuropeptide Y receptor	0.357	0.157	0.633	9.3e-14

FB|FBgn0038880 SIFR "SIFamide receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 265 (98.3 bits), Expect = 7.3e-22, P = 7.3e-22
 Identities = 48/73 (65%), Positives = 62/73 (84%)

Query:    87 LYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVIT 146
             LYRHS  +++ + + Y+ VFL+GL+GNS VIAVV+R+PRMR VTNYFIVNLA+AD+LVI 
Sbjct:   200 LYRHSLAMSMVYCVAYIVVFLVGLIGNSFVIAVVLRAPRMRTVTNYFIVNLAIADILVIV 259

Query:   147 LCLPATLMANIYV 159
              CLPATL+ NI+V
Sbjct:   260 FCLPATLIGNIFV 272

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0008528 "G-protein coupled peptide receptor activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS;IDA

GO:0004930 "G-protein coupled receptor activity" evidence=ISS

GO:0004984 "olfactory receptor activity" evidence=IEA

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IMP

ZFIN|ZDB-GENE-060526-183 npffr2.1 "neuropeptide FF receptor 2.1" [Danio rerio (taxid:7955)]

 Score = 197 (74.4 bits), Expect = 4.5e-15, P = 4.5e-15
 Identities = 36/79 (45%), Positives = 52/79 (65%)

Query:    88 YRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITL 147
             Y H P V   FI+ YL +FL+ ++GN +V  +V+RS  MR VTN FI+NLA++D+LV   
Sbjct:    39 YLHQPSVAAVFIVSYLLIFLVCMIGNGVVCFIVLRSKNMRTVTNLFILNLAISDLLVGIF 98

Query:   148 CLPATLMANIYVHFDLKSL 166
             C+P TL+ NI   +   S+
Sbjct:    99 CMPTTLLDNIITGWPFGSM 117

GO:0043408 "regulation of MAPK cascade" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0008188 "neuropeptide receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:2000479 "regulation of cAMP-dependent protein kinase activity" evidence=IEA

GO:0045761 "regulation of adenylate cyclase activity" evidence=IEA

GO:0031628 "opioid receptor binding" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

UNIPROTKB|F1NVD9 NPFFR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 193 (73.0 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 38/79 (48%), Positives = 50/79 (63%)

Query:    88 YRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITL 147
             Y H P V   FI  YL +FL+ +VGN +V   V+RS  MR VTN FI+NLAV+D+LV   
Sbjct:    38 YHHQPSVAAVFIASYLLIFLLCMVGNGVVCYTVLRSKHMRTVTNLFILNLAVSDLLVGIF 97

Query:   148 CLPATLMANIYVHFDLKSL 166
             C+P TL+ NI   +   S+
Sbjct:    98 CMPTTLLDNIIAGWPFGSM 116

GO:0008188 "neuropeptide receptor activity" evidence=IEA

GO:0031628 "opioid receptor binding" evidence=IEA

GO:0043408 "regulation of MAPK cascade" evidence=IEA

GO:0045761 "regulation of adenylate cyclase activity" evidence=IEA

GO:2000479 "regulation of cAMP-dependent protein kinase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

ZFIN|ZDB-GENE-070705-159 npffr2.2 "neuropeptide FF receptor 2.2" [Danio rerio (taxid:7955)]

 Score = 191 (72.3 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 36/79 (45%), Positives = 53/79 (67%)

Query:    88 YRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITL 147
             Y H P V+  FI+ YL +F++ ++GN +V  +V+RS  MR VTN FI+NLA++D+LV   
Sbjct:    37 YLHEPFVSAIFIVSYLLIFIVCMMGNGVVCFIVLRSKNMRTVTNLFILNLAISDLLVGIF 96

Query:   148 CLPATLMANIYVHFDLKSL 166
             C+P TL+ NI   +   SL
Sbjct:    97 CMPTTLVDNIITGWPFGSL 115

GO:0045761 "regulation of adenylate cyclase activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0008188 "neuropeptide receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031628 "opioid receptor binding" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0043408 "regulation of MAPK cascade" evidence=IEA

GO:2000479 "regulation of cAMP-dependent protein kinase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-060526-110 npffr1l2 "neuropeptide FF receptor 1 like 2" [Danio rerio (taxid:7955)]

 Score = 191 (72.3 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 46/109 (42%), Positives = 64/109 (58%)

Query:    54 DLNTSGRLTGTLD----LLPALTHNLTLNTTSGVPEL-LYRHSPGVTITFIIGYLAVFLI 108
             ++ TS  LT TLD    L  A T+N      S +     Y+HS  V     + YL +FL+
Sbjct:     3 EMETSQELT-TLDMNISLSNAYTNNSNATNHSSITYYPYYQHSLPVAAALTLAYLFIFLL 61

Query:   109 GLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANI 157
              +VGN LV  +V+ + RMR VTN FI+NLAV+D+LV   C+P TL+ N+
Sbjct:    62 CMVGNGLVCLIVLENRRMRTVTNLFILNLAVSDLLVGVFCIPTTLVDNL 110

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0008188 "neuropeptide receptor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|F1SUD0 NPFFR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 190 (71.9 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 36/70 (51%), Positives = 52/70 (74%)

Query:    88 YRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITL 147
             Y+HS  V   FI+ Y+ +FL+ +VGN+LV  VV+++ RMR VTN FI+NLAV+D+LV   
Sbjct:    36 YQHSSPVAAMFIVAYVLIFLLCMVGNTLVCFVVLKNRRMRTVTNMFILNLAVSDLLVGIF 95

Query:   148 CLPATLMANI 157
             C+P TL+ N+
Sbjct:    96 CMPTTLVDNL 105

GO:0016021 "integral to membrane" evidence=IEA

GO:2000479 "regulation of cAMP-dependent protein kinase activity" evidence=IEA

GO:0045761 "regulation of adenylate cyclase activity" evidence=IEA

GO:0043408 "regulation of MAPK cascade" evidence=IEA

GO:0031628 "opioid receptor binding" evidence=IEA

GO:0008188 "neuropeptide receptor activity" evidence=IEA

ZFIN|ZDB-GENE-091118-18 npffr1l1 "neuropeptide FF receptor 1 like 1" [Danio rerio (taxid:7955)]

 Score = 185 (70.2 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 36/70 (51%), Positives = 52/70 (74%)

Query:    88 YRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITL 147
             Y HS G+ +++I+ YL V L+ +VGN LV  VVIR+  MR+VTN FI+NLAV+D+LV   
Sbjct:     9 YIHSAGMAVSYILSYLLVLLLCVVGNGLVCLVVIRNRNMRSVTNLFILNLAVSDLLVGIF 68

Query:   148 CLPATLMANI 157
             C+P TL+ ++
Sbjct:    69 CVPTTLIDSL 78

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0008188 "neuropeptide receptor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

ZFIN|ZDB-GENE-040924-8 npy2r "neuropeptide Y receptor Y2" [Danio rerio (taxid:7955)]

 Score = 185 (70.2 bits), Expect = 7.3e-14, P = 7.3e-14
 Identities = 37/66 (56%), Positives = 45/66 (68%)

Query:    93 GVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPAT 152
             GV +  I+ Y  +   G+ GNSLVI VV +   +  VTNYFIVNLAVAD+LV TLCLP T
Sbjct:    53 GVQVILILAYSTIIFFGMTGNSLVIYVVYKFRNLHTVTNYFIVNLAVADLLVNTLCLPFT 112

Query:   153 LMANIY 158
             LM  +Y
Sbjct:   113 LMYTLY 118

GO:0004930 "G-protein coupled receptor activity" evidence=IEA;ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA;IC

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0042923 "neuropeptide binding" evidence=IPI

RGD|620475 Npy2r "neuropeptide Y receptor Y2" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 9.2e-14, P = 9.2e-14
 Identities = 37/60 (61%), Positives = 46/60 (76%)

Query:    94 VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATL 153
             V +  I+ Y ++ L+G+VGNSLVI VVI+   MR VTN+FI NLAVAD+LV TLCLP TL
Sbjct:    49 VQVVLILAYCSIILLGVVGNSLVIHVVIKFKSMRTVTNFFIANLAVADLLVNTLCLPFTL 108

GO:0001601 "peptide YY receptor activity" evidence=IDA

GO:0001662 "behavioral fear response" evidence=IMP

GO:0002793 "positive regulation of peptide secretion" evidence=IDA

GO:0004983 "neuropeptide Y receptor activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IDA

GO:0007263 "nitric oxide mediated signal transduction" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0030818 "negative regulation of cAMP biosynthetic process" evidence=IMP

GO:0031645 "negative regulation of neurological system process" evidence=IDA

GO:0033603 "positive regulation of dopamine secretion" evidence=IMP

GO:0042755 "eating behavior" evidence=IDA

GO:0045785 "positive regulation of cell adhesion" evidence=IMP

GO:0045987 "positive regulation of smooth muscle contraction" evidence=IMP

GO:0046010 "positive regulation of circadian sleep/wake cycle, non-REM sleep" evidence=IDA

GO:0046903 "secretion" evidence=IMP

GO:0050805 "negative regulation of synaptic transmission" evidence=IDA

GO:0051048 "negative regulation of secretion" evidence=IMP

GO:0051930 "regulation of sensory perception of pain" evidence=IDA

GO:0051967 "negative regulation of synaptic transmission, glutamatergic" evidence=IMP

GO:0090394 "negative regulation of excitatory postsynaptic membrane potential" evidence=IDA

UNIPROTKB|F1RYR8 NPY2R "Neuropeptide Y receptor type 2" [Sus scrofa (taxid:9823)]

 Score = 184 (69.8 bits), Expect = 9.3e-14, P = 9.3e-14
 Identities = 38/60 (63%), Positives = 46/60 (76%)

Query:    94 VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATL 153
             V I  I+ Y ++ L+G+VGNSLVI VVI+   MR VTN+FI NLAVAD+LV TLCLP TL
Sbjct:    50 VQIILILAYCSIILLGVVGNSLVIHVVIKFKSMRTVTNFFIANLAVADLLVNTLCLPFTL 109

GO:0003214 "cardiac left ventricle morphogenesis" evidence=IEA

GO:0003151 "outflow tract morphogenesis" evidence=IEA

GO:0001601 "peptide YY receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	168
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	2e-07
PHA02638	417	PHA02638, PHA02638, CC chemokine receptor-like pro	0.003
PHA03087	335	PHA03087, PHA03087, G protein-coupled chemokine re	0.003

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 118 AVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFD 162
            V++R+ ++R  TN F++NLAVAD+L +    P        V  D
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPP--WALYYLVGGD 43

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 15/54 (27%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 92  PGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVI 145
           P ++    I Y+ +F++GL GN+ +I ++    +++ +T+ +I NLA++D++ +
Sbjct: 95  PSISEYIKIFYIIIFILGLFGNAAIIMILFCK-KIKTITDIYIFNLAISDLIFV 147

Length = 417

>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 94  VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLP 150
            +   I+ Y  +F  GLVGN +VI  V+   +++   + +++NLAV+D L+  + LP
Sbjct: 39  NSTILIVVYSTIFFFGLVGNIIVI-YVLTKTKIKTPMDIYLLNLAVSD-LLFVMTLP 93

Length = 335

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
KOG4219|consensus	423		99.43
PHA03234	338	DNA packaging protein UL33; Provisional	99.27
KOG4220|consensus	503		99.16
PHA02834	323	chemokine receptor-like protein; Provisional	99.02
PHA02638	417	CC chemokine receptor-like protein; Provisional	98.99
PHA03235	409	DNA packaging protein UL33; Provisional	98.78
PHA03087	335	G protein-coupled chemokine receptor-like protein;	98.77
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	98.49
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	97.81
KOG2087|consensus	363		95.65
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	94.89
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	93.74
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	92.96
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	91.23
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	88.2
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	88.03
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	80.39

>KOG4219|consensus

Probab=99.43  E-value=1.1e-13  Score=117.81  Aligned_cols=79  Identities=27%  Similarity=0.418  Sum_probs=73.3

Q ss_pred             ccCCCchhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCCC
Q psy8502          88 YRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKSL  166 (168)
Q Consensus        88 ~~~~~~~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~~  166 (168)
                      +......+.++.++|.++.+++++||++|+|++..+|++|+.+|+||+|||+||++.++++.|+...+.+...|.||.+
T Consensus        28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f  106 (423)
T KOG4219|consen   28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSF  106 (423)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccc
Confidence            3445667788899999999999999999999999999999999999999999999999999999999999999999983

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.27  E-value=1.4e-11  Score=104.09  Aligned_cols=71  Identities=15%  Similarity=0.206  Sum_probs=58.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhHHH--hhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCCC
Q psy8502          94 VTITFIIGYLAVFLIGLVGNSLVIAVV--IRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKSL  166 (168)
Q Consensus        94 ~~~~~~~~~~ii~l~gl~GN~lvl~~i--~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~~  166 (168)
                      .+.++.++|.+++++|++||++|++++  .+++++|+++|+|++|||+||++++ +.+|+.+... .+.|+||++
T Consensus        31 ~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~-l~lp~~~~~~-~~~w~fG~~  103 (338)
T PHA03234         31 AQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHM-LCVFFLTLNR-EALFNFNQA  103 (338)
T ss_pred             HHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hCCccCchh
Confidence            556778999999999999999999854  4556679999999999999999996 4667665543 467999975

>KOG4220|consensus

Probab=99.16  E-value=6.2e-12  Score=107.73  Aligned_cols=73  Identities=22%  Similarity=0.349  Sum_probs=67.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCCC
Q psy8502          94 VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKSL  166 (168)
Q Consensus        94 ~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~~  166 (168)
                      .-+.++++...+.+++++||++|++.+.-+|+|++..|||+++||+|||+++.+.+|+...+.+.|+|++|..
T Consensus        29 q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~  101 (503)
T KOG4220|consen   29 QVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPL  101 (503)
T ss_pred             EEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchH
Confidence            3456677788999999999999999999999999999999999999999999999999999999999999964

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.02  E-value=1.2e-09  Score=91.38  Aligned_cols=70  Identities=27%  Similarity=0.524  Sum_probs=58.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCCC
Q psy8502          94 VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKSL  166 (168)
Q Consensus        94 ~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~~  166 (168)
                      ...+..+++.+++++|++||+++++++.++++ ++++|+|++|||++|++. .+.+|+.+... .++|.+|+.
T Consensus        27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~~w~~g~~   96 (323)
T PHA02834         27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHND-LNEWIFGEF   96 (323)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHH-cCCcCCcch
Confidence            44577889999999999999999998887665 457899999999999986 67899876554 457999973

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=98.99  E-value=1.8e-09  Score=93.74  Aligned_cols=70  Identities=21%  Similarity=0.569  Sum_probs=59.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCCC
Q psy8502          94 VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKSL  166 (168)
Q Consensus        94 ~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~~  166 (168)
                      ....+.+++.+++++|++||++|++++.+ |++|++++++++|||++|+++ ++.+|+.+... .++|.||+.
T Consensus        97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~-~l~lPf~i~~~-~~~W~fg~~  166 (417)
T PHA02638         97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIF-VIDFPFIIYNE-FDQWIFGDF  166 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHH-HHHHHHHHHHH-hcccccccc
Confidence            44567788999999999999999987654 778999999999999999988 57899887654 478999974

>PHA03235 DNA packaging protein UL33; Provisional

Probab=98.78  E-value=3.3e-08  Score=85.79  Aligned_cols=68  Identities=19%  Similarity=0.243  Sum_probs=51.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCC--CchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCC
Q psy8502          93 GVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRM--RNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLK  164 (168)
Q Consensus        93 ~~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l--~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG  164 (168)
                      ..+.+..+++.+++++|++||++|++++.++++.  ++..++|++|||++|++. ++++|+.+..   ..|.+|
T Consensus        30 ~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~---~~~~~~   99 (409)
T PHA03235         30 AARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLS---NQGLLS   99 (409)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHh---cCcccc
Confidence            3556788899999999999999999876433332  356689999999999987 6789987643   345544

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=98.77  E-value=2.7e-08  Score=83.05  Aligned_cols=72  Identities=28%  Similarity=0.596  Sum_probs=61.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCC
Q psy8502          92 PGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKS  165 (168)
Q Consensus        92 ~~~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~  165 (168)
                      ...+.+..+++.+++++|++||+++++++.++ ++|++.|+++.|||++|++.+ +..|..+.....++|.+|+
T Consensus        37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~-~~~~~~~~~~~~~~~~~~~  108 (335)
T PHA03087         37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFV-MTLPFQIYYYILFQWSFGE  108 (335)
T ss_pred             cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHH-HhHHHHHHHHhCCCCCCCc
Confidence            34556777888999999999999999998887 889999999999999999875 5678777666678898875

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.49  E-value=2e-07  Score=72.36  Aligned_cols=54  Identities=41%  Similarity=0.688  Sum_probs=48.3

Q ss_pred             HHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCC
Q psy8502         112 GNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKS  165 (168)
Q Consensus       112 GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~  165 (168)
                      ||+++++++.++|++|++.++|++|||++|++.++...|..+.....+.|.+|+
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~   54 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSS   54 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccc
Confidence            899999999999999999999999999999999998889888777778888764

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.81  E-value=7.7e-06  Score=66.67  Aligned_cols=48  Identities=33%  Similarity=0.562  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHH
Q psy8502         107 LIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLM  154 (168)
Q Consensus       107 l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~  154 (168)
                      ++|++||..++.++.++|++|+|++++++.+|++|+++.+..+|..+.
T Consensus         2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~   49 (257)
T PF10320_consen    2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLF   49 (257)
T ss_pred             EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            468999999999999999999999999999999999998888887763

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>KOG2087|consensus

Probab=95.65  E-value=0.0059  Score=52.19  Aligned_cols=51  Identities=29%  Similarity=0.338  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHH
Q psy8502         104 AVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLM  154 (168)
Q Consensus       104 ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~  154 (168)
                      ++.+++++||.+|++.....+...+...++++|||++|+++++-..-...+
T Consensus        33 ~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~v   83 (363)
T KOG2087|consen   33 VIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASV   83 (363)
T ss_pred             hhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHh
Confidence            567788999999998877766666778899999999999987644444333

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=94.89  E-value=0.18  Score=42.08  Aligned_cols=61  Identities=23%  Similarity=0.462  Sum_probs=44.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhHHHh---hcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHH
Q psy8502          94 VTITFIIGYLAVFLIGLVGNSLVIAVVI---RSPRMRNVTNYFIVNLAVADMLVITLCLPATLM  154 (168)
Q Consensus        94 ~~~~~~~~~~ii~l~gl~GN~lvl~~i~---~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~  154 (168)
                      .+.+..++..+.+++|++||+.++.+.+   .++|.-.|.+..+.+||++.++...+..-....
T Consensus         5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~   68 (303)
T PF05296_consen    5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFL   68 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677888899999999998876653   344445689999999999998876544433333

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=93.74  E-value=0.16  Score=41.30  Aligned_cols=44  Identities=20%  Similarity=0.429  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhh
Q psy8502         105 VFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLC  148 (168)
Q Consensus       105 i~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~  148 (168)
                      +.++|++.|.++++.+.+.+++|++.+++-.+.|++|.+.++..
T Consensus         3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~   46 (274)
T PF10328_consen    3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIF   46 (274)
T ss_pred             eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999987643

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=92.96  E-value=0.12  Score=42.72  Aligned_cols=52  Identities=25%  Similarity=0.356  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHhhHHHhhcCCCCc-hhHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q psy8502         105 VFLIGLVGNSLVIAVVIRSPRMRN-VTNYFIVNLAVADMLVITLCLPATLMANI  157 (168)
Q Consensus       105 i~l~gl~GN~lvl~~i~~~~~l~~-~~~~fi~nLA~aDLl~~~~~~P~~i~~~~  157 (168)
                      +.++|+++|.+-+.++. +|.+|+ ++|.++.-+|++|++..+..++..+....
T Consensus         6 ~~~~g~~~N~~h~~VLt-rk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~   58 (318)
T PF10324_consen    6 LSIFGLFINIFHLIVLT-RKSMRSSSINILLIGIAICDLLYMLSILIWELFFFI   58 (318)
T ss_pred             EeHHHHHHHHHHhhhcC-ChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45789999998876554 566786 89999999999999998888877664443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=91.23  E-value=0.73  Score=38.74  Aligned_cols=54  Identities=22%  Similarity=0.284  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhh
Q psy8502          96 ITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCL  149 (168)
Q Consensus        96 ~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~  149 (168)
                      ..+.++..+..+++++|-++++..+++.|++|++.+-++.-++++|++..+..+
T Consensus         7 ~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~   60 (303)
T PF05462_consen    7 RTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASM   60 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence            344556667788899999999999999999999999999999999998765443

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=88.20  E-value=2.3  Score=33.50  Aligned_cols=34  Identities=24%  Similarity=0.230  Sum_probs=24.6

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q psy8502         124 PRMRNVTNYFIVNLAVADMLVITLCLPATLMANI  157 (168)
Q Consensus       124 ~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~  157 (168)
                      ++.+...+-++.||.++|++.++..+...+.+..
T Consensus        30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~   63 (201)
T PF11710_consen   30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLA   63 (201)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456777789999999999998766554444443

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=88.03  E-value=3.1  Score=35.09  Aligned_cols=54  Identities=11%  Similarity=0.106  Sum_probs=42.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhh
Q psy8502          94 VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITL  147 (168)
Q Consensus        94 ~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~  147 (168)
                      .+.++++.+.+.+++-.+-....+.++.++++.|.+.|-.+.-||+.|++...+
T Consensus        31 ~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~   84 (313)
T PF10321_consen   31 KRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFI   84 (313)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHh
Confidence            445666666677777777788888888887777889999999999999987543

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=80.39  E-value=2.8  Score=34.46  Aligned_cols=48  Identities=21%  Similarity=0.379  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHhhc-CCCCchhHHHHHHHHHHHHHHHhhh
Q psy8502         101 GYLAVFLIGLVGNSLVIAVVIRS-PRMRNVTNYFIVNLAVADMLVITLC  148 (168)
Q Consensus       101 ~~~ii~l~gl~GN~lvl~~i~~~-~~l~~~~~~fi~nLA~aDLl~~~~~  148 (168)
                      ++.+.+.+|++-|++.++++.++ ++.-+..-+++.|-|+.|++.++..
T Consensus         4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~   52 (292)
T PF10317_consen    4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISA   52 (292)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677889999999999877654 4434457789999999999886443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		8e-09
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		8e-07
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		1e-05
3pwh_A	329	Thermostabilised Adenosine A2a Receptor Length = 32		6e-05
4dkl_A	464	Crystal Structure Of The Mu-Opioid Receptor Bound T		8e-05
4eiy_A	447	Crystal Structure Of The Chimeric Protein Of A2aar-		1e-04
3eml_A	488	The 2.6 A Crystal Structure Of A Human A2a Adenosin		1e-04
3oe6_A	508	Crystal Structure Of The Cxcr4 Chemokine Receptor I		2e-04
2ydo_A	325	Thermostabilised Human A2a Receptor With Adenosine		2e-04
3vg9_A	326	Crystal Structure Of Human Adenosine A2a Receptor W		2e-04
3odu_A	502	The 2.5 A Structure Of The Cxcr4 Chemokine Receptor		5e-04
3oe0_A	499	Crystal Structure Of The Cxcr4 Chemokine Receptor I		5e-04
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		5e-04
4ej4_A	461	Structure Of The Delta Opioid Receptor Bound To Nal		7e-04

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 91  SPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVIT 146
           SP + +     Y  VF++GLVGNSLV+ V+IR  +M+  TN +I NLA+AD LV T
Sbjct: 18  SPAIPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTT 73

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 93  GVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLP 150
           G+ +T +  YLAV + GL+GN LV+ V++R  +M+  TN +I NLA+AD LV+ L LP
Sbjct: 123 GLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVL-LTLP 179

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 98  FIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLP 150
           + + Y A+ L  + GN LV   V++   ++  TNY +V+LAVAD+LV TL +P
Sbjct: 41  YALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMP 93

>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 103 LAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLP 150
           LA+ ++ ++GN LV   V  +  ++NVTNYF+V+LA AD+LV  L +P
Sbjct: 14  LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIP 61

>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 72  THNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTN 131
           +H+L   T  G P ++        IT +  Y  V ++GL GN LV+ V++R  +M+  TN
Sbjct: 2   SHSLCPQT--GSPSMV------TAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATN 53
Query: 132 YFIVNLAVADML 143
            +I NLA+AD L
Sbjct: 54  IYIFNLALADAL 65

>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 98  FIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLP 150
           +I   LA+ ++ ++GN LV   V  +  ++NVTNYF+V+LA AD+ V  L +P
Sbjct: 34  YITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP 86

>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 103 LAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLP 150
           LA+ ++ ++GN LV   V  +  ++NVTNYF+V+LA AD+ V  L +P
Sbjct: 29  LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP 76

>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 102 YLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADML-VITL 147
           Y  +FL G+VGN LVI V+    ++R++T+ + ++L+VAD+L VITL
Sbjct: 55  YSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITL 101

>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 103 LAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLP 150
           LA+ ++ ++GN LV   V  +  ++NVTNYF+V+ A AD+LV  L +P
Sbjct: 14  LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIP 61

>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 103 LAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLP 150
           LA+ ++ ++GN LV   V  +  ++NVTNYF+V+LA AD+ V  L +P
Sbjct: 14  LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP 61

>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 102 YLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADML-VITLCLPAT-LMANIY 158
           Y  +FL G+VGN LVI V+    ++R++T+ + ++L+VAD+L VITL   A   +AN Y
Sbjct: 55  YSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVANWY 113

>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 102 YLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADML-VITLCLPAT-LMANIY 158
           Y  +FL G+VGN LVI V+    ++R++T+ + ++L+VAD+L VITL   A   +AN Y
Sbjct: 55  YSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVANWY 113

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 94  VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLV 144
           V I F+ G+LA  L+ ++GN LVI     + +++ V NYF+++LA AD+++
Sbjct: 13  VFIAFLTGFLA--LVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLII 61

>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 82  GVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVAD 141
           G P      S  + I     Y AV  +GL+GN LV+  ++R  +++  TN +I NLA+AD
Sbjct: 1   GSPGARSASSLALAIAITALYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALAD 60
Query: 142 MLVIT 146
            L  +
Sbjct: 61  ALATS 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	3e-28
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	3e-20
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	3e-19
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	8e-19
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	6e-18
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	2e-17
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	7e-17
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	2e-16
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	1e-15
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	1e-15
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	2e-15
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	7e-15
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	7e-15
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	2e-14
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	8e-13

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score =  106 bits (267), Expect = 3e-28
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 3/100 (3%)

Query: 61  LTGTLDLLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVV 120
           +   L +   L+ N++ NT+       +       + +   Y  + +  +VGN +V+ ++
Sbjct: 1   MDNVLPVDSDLSPNISTNTSEPNQ---FVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWII 57

Query: 121 IRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVH 160
           +   RMR VTNYF+VNLA A+  +            ++  
Sbjct: 58  LAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNE 97

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 82.8 bits (204), Expect = 3e-19
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 6/98 (6%)

Query: 64  TLDLLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRS 123
            L  +  L      +   G P ++       +  +I   LA+ ++ ++GN LV   V  +
Sbjct: 6   ALSYIFCLVFADYKDDDDGAPPIM------GSSVYITVELAIAVLAILGNVLVCWAVWLN 59

Query: 124 PRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHF 161
             ++NVTNYF+V+LA AD+ V  L +P  +  +     
Sbjct: 60  SNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCA 97

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 80.9 bits (200), Expect = 8e-19
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 74  NLTLNTTSGVPELLYRHSPGVTITFIIG--YLAVFLIGLVGNSLVIAVVIRSPRMRNVTN 131
           N T    S   E    +        ++      + ++G   N L + V ++  ++R   N
Sbjct: 16  NKTGVVRS-PFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLN 74

Query: 132 YFIVNLAVADMLVITLCLPATLMANIYVHF 161
           Y ++NLAVAD+ ++      TL  +++ +F
Sbjct: 75  YILLNLAVADLFMVFGGFTTTLYTSLHGYF 104

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 79.0 bits (194), Expect = 6e-18
 Identities = 14/77 (18%), Positives = 39/77 (50%)

Query: 74  NLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYF 133
           + + +++     L   +     +  ++   ++ L+ ++GN LV+  +  +  ++ V NYF
Sbjct: 2   DDSTDSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYF 61

Query: 134 IVNLAVADMLVITLCLP 150
           + +LA AD+++    + 
Sbjct: 62  LFSLACADLIIGVFSMN 78

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 77.1 bits (189), Expect = 2e-17
 Identities = 26/79 (32%), Positives = 39/79 (49%)

Query: 72  THNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTN 131
             +  LN T G               + + Y A+ L  + GN LV   V++   ++  TN
Sbjct: 15  QLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTN 74

Query: 132 YFIVNLAVADMLVITLCLP 150
           Y +V+LAVAD+LV TL +P
Sbjct: 75  YLVVSLAVADLLVATLVMP 93

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 75.9 bits (186), Expect = 7e-17
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 78  NTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNL 137
           +               V IT     LA+ ++ ++GN LV   V  +  ++NVTNYF+V+L
Sbjct: 7   DAMGQPVGAPPIMGSSVYITV---ELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSL 63

Query: 138 AVADMLVITLCLPATLMANIYVHF 161
           A AD+ V  L +P  +  +     
Sbjct: 64  AAADIAVGVLAIPFAITISTGFCA 87

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 74.3 bits (182), Expect = 2e-16
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 90  HSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCL 149
            S    IT +  Y  V ++GL GN LV+ V++R  +M+  TN +I NLA+AD L  T  L
Sbjct: 12  PSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALA-TSTL 70

Query: 150 P 150
           P
Sbjct: 71  P 71

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 72.4 bits (177), Expect = 1e-15
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 91  SPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLP 150
           +    +  ++    + L+ +  N LV+  V    ++  V N +IV+L+VAD++V  + +P
Sbjct: 4   ASPQLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMP 63

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 72.6 bits (177), Expect = 1e-15
 Identities = 13/77 (16%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 78  NTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNL 137
           N T  +     + +     + +  ++ +    ++ N  V+  + ++ +      YFI NL
Sbjct: 48  NYTGKLNISADKENSIKLTSVV--FILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNL 105

Query: 138 AVADMLVITLCLPATLM 154
           A++D+L         L+
Sbjct: 106 ALSDLLAGVAYTANLLL 122

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 71.7 bits (175), Expect = 2e-15
 Identities = 19/73 (26%), Positives = 36/73 (49%)

Query: 78  NTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNL 137
            + +   ++  +      +   I    + L  + GN LVI  + +  R++ VTNYFI +L
Sbjct: 23  RSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSL 82

Query: 138 AVADMLVITLCLP 150
           A AD+++    +P
Sbjct: 83  ACADLVMGLAVVP 95

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 70.3 bits (172), Expect = 7e-15
 Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 102 YLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLP 150
           Y  +FL G+VGN LVI V+    ++R++T+ + ++L+VAD+L   + LP
Sbjct: 55  YSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLP 102

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 70.0 bits (171), Expect = 7e-15
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 102 YLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLV-ITLCLPATLMANIYVH 160
                +IG  GN +VI +  ++  ++   N FI+NLA +D    +    P   ++     
Sbjct: 41  IGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKK 100

Query: 161 F 161
           +
Sbjct: 101 W 101

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 69.2 bits (169), Expect = 2e-14
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 66  DLLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPR 125
                    +T   T             V +  ++  + + ++   GN LVI  + +  R
Sbjct: 155 QTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIV--FGNVLVITAIAKFER 212

Query: 126 MRNVTNYFIVNLAVADMLVITLCLP 150
           ++ VTNYFI +LA AD+++    +P
Sbjct: 213 LQTVTNYFITSLACADLVMGLAVVP 237

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 63.6 bits (155), Expect = 8e-13
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 91  SPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLP 150
           S        +    V L+ + GN LVIA +  + R++ +TN FI +LA AD++V  L +P
Sbjct: 7   SQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVP 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.44
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.4
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.39
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.39
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.35
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.33
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.31
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.29
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.27
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.23
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.22
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.22
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.22
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.22
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.19
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.17
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.11
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.09
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	96.58

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.44  E-value=8.7e-13  Score=107.91  Aligned_cols=70  Identities=26%  Similarity=0.450  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCC
Q psy8502          96 ITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKS  165 (168)
Q Consensus        96 ~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~  165 (168)
                      .++.+++.+++++|++||+++++++.+++++|+++|+|++|||++|++.+++.+|..+.....+.|.+|+
T Consensus        33 ~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~  102 (364)
T 2ks9_A           33 VLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGL  102 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchH
Confidence            4457888999999999999999999999999999999999999999999999999999888889999885

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.40  E-value=2.9e-13  Score=117.29  Aligned_cols=73  Identities=26%  Similarity=0.514  Sum_probs=61.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCC---CchhHHHHHHHHHHHHHHHhhhhhHHHHHHhh--CCCcCCC
Q psy8502          93 GVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRM---RNVTNYFIVNLAVADMLVITLCLPATLMANIY--VHFDLKS  165 (168)
Q Consensus        93 ~~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l---~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~--~~W~fG~  165 (168)
                      ..++++.++|++++++|++||++|++++.++|++   |+++|+||+|||++|++++++++|+.+...+.  +.|.||+
T Consensus        30 ~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~  107 (510)
T 4grv_A           30 YSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGD  107 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhH
Confidence            4567778899999999999999999999887654   47899999999999999999999999887765  5699986

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.39  E-value=1e-12  Score=110.46  Aligned_cols=74  Identities=19%  Similarity=0.329  Sum_probs=68.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCC
Q psy8502          92 PGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKS  165 (168)
Q Consensus        92 ~~~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~  165 (168)
                      .....++.+++.+++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|..+.....+.|.+|+
T Consensus        20 ~~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~   93 (467)
T 3uon_A           20 TFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGP   93 (467)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCc
Confidence            34557778889999999999999999999999999999999999999999999999999999999999999885

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.39  E-value=1.8e-12  Score=103.66  Aligned_cols=71  Identities=37%  Similarity=0.570  Sum_probs=61.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCCC
Q psy8502          94 VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKSL  166 (168)
Q Consensus        94 ~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~~  166 (168)
                      .+.+..++|.+++++|++||++|++++.++|++|+++|+|++|||++|++++ +.+|..+.... .+|.+|+.
T Consensus        10 ~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~-l~~p~~~~~~~-~~~~~~~~   80 (296)
T 2lnl_A           10 NKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFA-LTLPIWAASKV-NGWIFGTF   80 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHH-HHHHHHHHHHH-SSSCCSSH
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHH-HhhhHHHhhcc-CCCccchh
Confidence            4567778899999999999999999999999999999999999999999986 56787766554 56999863

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.35  E-value=1.8e-12  Score=111.68  Aligned_cols=74  Identities=26%  Similarity=0.335  Sum_probs=67.5

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCC
Q psy8502          92 PGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKS  165 (168)
Q Consensus        92 ~~~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~  165 (168)
                      +....++.+++.+++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|+.+...+.+.|.+|+
T Consensus        37 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~  110 (500)
T 2rh1_A           37 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGN  110 (500)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCc
Confidence            34456677889999999999999999999999999999999999999999999999999999999899999985

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.33  E-value=8.2e-12  Score=100.98  Aligned_cols=74  Identities=23%  Similarity=0.341  Sum_probs=66.7

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCC
Q psy8502          92 PGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKS  165 (168)
Q Consensus        92 ~~~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~  165 (168)
                      +....++.+++.+++++|++||+++++++.+++++|+++|++++|||++|++.+++.+|..+.....+.|.+|+
T Consensus        35 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~  108 (349)
T 1u19_A           35 PWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGP  108 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCCh
Confidence            34456777888999999999999999999999999999999999999999999998999999888889998875

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.31  E-value=6.4e-12  Score=105.35  Aligned_cols=73  Identities=33%  Similarity=0.497  Sum_probs=66.4

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCC
Q psy8502          92 PGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKS  165 (168)
Q Consensus        92 ~~~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~  165 (168)
                      .....++.+++.+++++|++||+++++++.+++++|+++|+|++|||++|++++++ +|+.+...+.+.|.+|+
T Consensus        14 ~~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~~~~~~~   86 (464)
T 4dkl_A           14 MVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMGTWPFGN   86 (464)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCCSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCccccc
Confidence            34567888899999999999999999999999999999999999999999998765 99999999999999986

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.29  E-value=4.5e-12  Score=107.13  Aligned_cols=72  Identities=31%  Similarity=0.518  Sum_probs=62.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhh-CCCcCCC
Q psy8502          94 VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIY-VHFDLKS  165 (168)
Q Consensus        94 ~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~-~~W~fG~  165 (168)
                      ...++.+++.+++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|..+...+. +.|.+|.
T Consensus        37 ~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~  109 (481)
T 3pbl_A           37 PHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSR  109 (481)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCc
Confidence            44566778899999999999999999999999999999999999999999999999998887777 6799885

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.27  E-value=7.4e-12  Score=104.82  Aligned_cols=72  Identities=22%  Similarity=0.389  Sum_probs=65.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCC
Q psy8502          94 VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKS  165 (168)
Q Consensus        94 ~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~  165 (168)
                      ...++.+++.+++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|..+...+.+.|.+|+
T Consensus         7 ~~~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~   78 (452)
T 3rze_A            7 QLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGR   78 (452)
T ss_dssp             --CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCc
Confidence            345677888999999999999999999999999999999999999999999999999999999999999875

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.23  E-value=9.4e-12  Score=98.90  Aligned_cols=72  Identities=29%  Similarity=0.323  Sum_probs=66.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCC
Q psy8502          94 VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKS  165 (168)
Q Consensus        94 ~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~  165 (168)
                      .+....+++.+++++|++||+++++++.+++++|+++|+|++|||++|++.+++.+|..+.....+.|.+|+
T Consensus        10 ~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~   81 (315)
T 4amj_A           10 WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGS   81 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccc
Confidence            456777888999999999999999999999999999999999999999999889999999998899999985

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.22  E-value=3.5e-11  Score=102.17  Aligned_cols=73  Identities=29%  Similarity=0.448  Sum_probs=64.1

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCC
Q psy8502          91 SPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKS  165 (168)
Q Consensus        91 ~~~~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~  165 (168)
                      ....+.++.+++.+++++|++||++|++++.+++++|+++|+|++|||++|+++ ++.+|+.+.... +.|.+|+
T Consensus        44 ~~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~-~~~~p~~~~~~~-~~~~~~~  116 (502)
T 3odu_A           44 ANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAV-ANWYFGN  116 (502)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHH-HTTHHHHHHHHH-TCCCSHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHh-cCCcCCc
Confidence            345567888999999999999999999999999999999999999999999999 578999887665 4798875

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.22  E-value=2.2e-11  Score=102.95  Aligned_cols=74  Identities=24%  Similarity=0.359  Sum_probs=63.3

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhh-CCCcCCC
Q psy8502          91 SPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIY-VHFDLKS  165 (168)
Q Consensus        91 ~~~~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~-~~W~fG~  165 (168)
                      .+....++.+++++++++|++||+++++++.+++++|+++|+|++|||++|+++++ ++|..+...+. +.|.+|+
T Consensus        16 ~~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~-~~~~~~~~~~~~~~~~~~~   90 (484)
T 3vw7_A           16 SSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVS-VLPFKISYYFSGSDWQFGS   90 (484)
T ss_dssp             CHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHT-THHHHHHHHHTTSCCCSCH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCcccch
Confidence            45566788899999999999999999999999999999999999999999999964 56766666655 4899884

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.22  E-value=2.7e-11  Score=104.96  Aligned_cols=69  Identities=17%  Similarity=0.281  Sum_probs=61.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCC
Q psy8502          96 ITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKS  165 (168)
Q Consensus        96 ~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~  165 (168)
                      .++.+++.+++++|++||++|++++.+++++|+++|+|++|||++|++++++.+|..+.. ..+.|.+|.
T Consensus        64 ~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~~~~~~~  132 (520)
T 3v2y_A           64 KLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTP  132 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGGTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cccceeeCc
Confidence            677889999999999999999999999999999999999999999999998888887765 566787764

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.22  E-value=2.8e-11  Score=104.35  Aligned_cols=74  Identities=26%  Similarity=0.332  Sum_probs=67.9

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCC
Q psy8502          92 PGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKS  165 (168)
Q Consensus        92 ~~~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~  165 (168)
                      +....++.+++.+++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|..+...+.+.|.+|+
T Consensus       179 ~~~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~  252 (514)
T 3sn6_R          179 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGN  252 (514)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCS
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCc
Confidence            44556777889999999999999999999999999999999999999999999999999999999999999986

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.17  E-value=5.2e-11  Score=100.42  Aligned_cols=69  Identities=33%  Similarity=0.477  Sum_probs=60.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCC
Q psy8502          94 VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLK  164 (168)
Q Consensus        94 ~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG  164 (168)
                      ...++.+++.+++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|+.+....  .|.+|
T Consensus        20 ~~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~--~~~~~   88 (488)
T 3eml_A           20 GSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAA   88 (488)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHTT--CCEEC
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccc
Confidence            4567778899999999999999999999999999999999999999999999999998876543  57665

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.11  E-value=1.9e-10  Score=96.97  Aligned_cols=72  Identities=22%  Similarity=0.281  Sum_probs=63.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhh-hhHHHHHHhhCCCcCCC
Q psy8502          94 VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLC-LPATLMANIYVHFDLKS  165 (168)
Q Consensus        94 ~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~-~P~~i~~~~~~~W~fG~  165 (168)
                      ...++.+++.+++++|++||+++++++.++|++|++.|++++|||++|++++++. +|..+...+.+.|.+|+
T Consensus        33 ~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~  105 (448)
T 2z73_A           33 VYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGF  105 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCH
Confidence            3455677888999999999999999999999999999999999999999998764 89998888889998874

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.09  E-value=1.4e-10  Score=96.88  Aligned_cols=69  Identities=33%  Similarity=0.480  Sum_probs=59.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCC
Q psy8502          94 VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLK  164 (168)
Q Consensus        94 ~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG  164 (168)
                      ...+..+++.+++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|..+...  ..|.+|
T Consensus        30 ~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~--~~~~~~   98 (447)
T 4eiy_A           30 GSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAA   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH--TTCEEE
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccC
Confidence            445777888999999999999999999999999999999999999999999999999887643  355544

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=96.58  E-value=0.00018  Score=45.96  Aligned_cols=30  Identities=37%  Similarity=0.527  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHhhcCCC
Q psy8502          97 TFIIGYLAVFLIGLVGNSLVIAVVIRSPRM  126 (168)
Q Consensus        97 ~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l  126 (168)
                      ++.++|+++|++|++||++|+|++.++|.-
T Consensus        30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~~   59 (64)
T 2lot_A           30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKGH   59 (64)
T ss_dssp             SSHHHHHHTTTTTTTSSSSHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeeEeccc
Confidence            667889999999999999999999887753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	2e-15

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.4 bits (171), Expect = 2e-15
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 74  NLTLNTTSGVPELLYRHSPGVTITFIIGYLA-VFLIGLVGNSLVIAVVIRSPRMRNVTNY 132
           N T    S      Y  +     + +  Y+  + ++G   N L + V ++  ++R   NY
Sbjct: 15  NKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNY 74

Query: 133 FIVNLAVADMLVITLCLPATLMANIYVHF 161
            ++NLAVAD+ ++      TL  +++ +F
Sbjct: 75  ILLNLAVADLFMVFGGFTTTLYTSLHGYF 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.35

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.35  E-value=2.5e-12  Score=102.44  Aligned_cols=75  Identities=23%  Similarity=0.337  Sum_probs=67.0

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHhhHHHhhcCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCCcCCC
Q psy8502          91 SPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFDLKS  165 (168)
Q Consensus        91 ~~~~~~~~~~~~~ii~l~gl~GN~lvl~~i~~~~~l~~~~~~fi~nLA~aDLl~~~~~~P~~i~~~~~~~W~fG~  165 (168)
                      .++...++.+++.+++++|++||+++++++.++|++|++.|++++|||++|++.++..+|..+.....+.|.+|.
T Consensus        33 ~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~  107 (348)
T d1u19a_          33 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGP  107 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCc
Confidence            344566778889999999999999999999999999999999999999999999999999999888888887754