Psyllid ID: psy8552

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520---
Protein Sequence
HLSYAPNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSSPPALPPRKLSPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMTVV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHcccccccccccEEccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccEEEEEccccccccEEEEEEEccEEEEEEEEEEccEEEcccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccHHcccccHHHHHHHHcccccccEEEEEcccccEEEEEEEccEEEEEEEEEEcccEEEcccccccccHHHHHHHHHHccHHHHccccccEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHccccccccccccccccccccHHHHHcccccccccccccEcccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccHHHHHHcccccccccccccccccccccccccccHcccccccccccHHHHHHHHccccccEEEEEEcccccccEEEEEEEcccEEEEEEEEccccEccccccccHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccccccHHHHEccccHHHHHHHHHHHHHHccccHHHHccccccccEEEHHHHHccccHHHHHccccccccccHHHHcHHHHHHccccccHcHHHEEccccHHHHHHHHccccccEEEEEEcccccEEEEEEEccEEEEEEEEEEccEEEcccccccEccHHHHHHHHHHccHHHccccccccccEEccccccccEEc
Coil and Loop (DISEMBL)
hlsyapnllnktdnvssttspfksdnlkaasehyskpdcglsaanlfepgnasQVAELFHAYSgeiksynfsklEPALLAIMLKTYLKSlteplipyvYYEKFVSLlsgsndrhIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYargvrepptilIQSFTfvlptfssppalpprklsprpsatyvhsrQSSLDVakmssgpetnslrdaewywgdisrddvndkladtadgtflvrdtstkngeYTLTLRKGGTNKLIKIFHrngrygfsepfkfTSVVELINYYKheslsqynstldtrllypvsrfssdvdadihsndvdknpapgvlrtfsepfkfTSVVELINYYKheslsqynstldtrllypvsrfssdvdadihsndvdKYINLKIAFTNLSGAVASTVDFESGEKTWLVRMSRAQAEALlsgrpdgtflirpsttgqyALSIvcsgapkhclvyetergfgfaepfniypSLGALVLHYAANSLEehnddlkttlaypvfapasgmtvv
Flexible Loop (DISEMBL)
hlsyapnllnktdnvssttspFKSDNLKAASEHYSKPDCGLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSSPPALPPRKLSPRPSATYVHSRqssldvakmssgpetnslrdaewywgDISRDDVNDKLAdtadgtflvrdtstkngeytltlrkggtnkLIKIFHrngrygfsepFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLVRMSRAQAEALlsgrpdgtFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAypvfapasgmtvv
Low Complexity Region (SEG)
HLSYAPNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSSPPALPPRKLSPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMTVV
Disordered region (IsUnstruct)
*******************************************ANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTF*******************************************AEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADI**********PGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA********
Disordered Region (DISOPRED)
***YAPN***************KSDNLKAASEHYSKPDCGLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSL****************VQDFPAHHFSALRYLMAHLARMCALQ*************QSFTFVLPTFSSPPALPPRKLSPRPSATYVHSRQSSLD************LRDAEWYWGDISRDDV*****DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVL***SEPFKFTSVVELINYYKHESLSQYNSTLDT******************SNDVDKYI********************SGEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPAS*****
Disordered Region (DISEMBL)
HLSYAPNLLNKT*************NLKAASEHYSKPDCGLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSSP***********************************NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMTVV
Disordered Region (DISPRO)
*LSYAPNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSSPPALPPRKLSPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFS*******HSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
HLSYAPNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSSPPALPPRKLSPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMTVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	523	2.2.26 [Sep-21-2011]
Q8UUU2	722	Phosphatidylinositol 3-ki	N/A	N/A	0.504	0.365	0.408	1e-51
Q5R685	724	Phosphatidylinositol 3-ki	yes	N/A	0.525	0.379	0.410	2e-49
P27986	724	Phosphatidylinositol 3-ki	yes	N/A	0.525	0.379	0.410	3e-49
Q63788	722	Phosphatidylinositol 3-ki	yes	N/A	0.340	0.246	0.482	4e-49
P23727	724	Phosphatidylinositol 3-ki	yes	N/A	0.521	0.377	0.414	2e-48
Q63787	724	Phosphatidylinositol 3-ki	no	N/A	0.521	0.377	0.410	8e-48
P26450	724	Phosphatidylinositol 3-ki	yes	N/A	0.523	0.378	0.408	9e-48
O00459	728	Phosphatidylinositol 3-ki	no	N/A	0.219	0.157	0.706	9e-45
P23726	724	Phosphatidylinositol 3-ki	no	N/A	0.458	0.331	0.410	2e-44
O08908	722	Phosphatidylinositol 3-ki	no	N/A	0.219	0.159	0.698	3e-44

>sp|Q8UUU2|P85AA_XENLA Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Xenopus laevis GN=pik3r1-a PE=2 SV=1

 Score =  204 bits (520), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/306 (40%), Positives = 172/306 (56%), Gaps = 42/306 (13%)

Query: 40  GLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVY 99
           GL +A L+   ++S + EL      +  S +F + + A+L+  LK Y   L  P+IP + 
Sbjct: 142 GLESATLYRSQSSSSLTELRQILECDAASVDFEQFDIAILSDALKRYFLDLPHPVIPALM 201

Query: 100 YEKFVSLL--SGSNDRHIGS-RLFALVQDFPAHHFSALRYLMAHLARMCA-----LQYAR 151
           Y + +S    S S+D ++   R      + P  ++  L+YL+ H  ++C      L  A+
Sbjct: 202 YSEMLSAARESISSDEYVQLLRKIIRCANVPQQYWLTLQYLLKHFFQLCQSSSKNLLSAK 261

Query: 152 GVRE---PPTILIQ--------SFTFVLPTF--------SSPPALPPRKLSPRPSATYVH 192
            + E   P    IQ          T +L            + PALPP+     PS +   
Sbjct: 262 SLAEIFSPLLFRIQVSSSDSSEFSTQILEVLIASEWNEKQAAPALPPK-----PSKSTAV 316

Query: 193 SRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTST-KNGEY 251
           +   +  V          SL+DAEWYWGDISR++VN+KL DT DGTFLVRD ST  +G+Y
Sbjct: 317 TNNGTNHVM---------SLQDAEWYWGDISREEVNEKLRDTTDGTFLVRDASTIMHGDY 367

Query: 252 TLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
           TLTLRKGG NKLIKIFHR+G+YGFS+P  F SVVELI +Y++ESL+QYN  LD +LLYPV
Sbjct: 368 TLTLRKGGNNKLIKIFHRDGKYGFSDPLTFNSVVELITHYRNESLAQYNPKLDVKLLYPV 427

Query: 312 SRFSSD 317
           SRF  D
Sbjct: 428 SRFQQD 433

Binds to activated (phosphorylated) protein-Tyr kinases, through its SH2 domain, and acts as an adapter, mediating the association of the p110 catalytic unit to the plasma membrane.
Xenopus laevis (taxid: 8355)

>sp|Q5R685|P85A_PONAB Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Pongo abelii GN=PIK3R1 PE=2 SV=1

 Score =  197 bits (501), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/295 (41%), Positives = 174/295 (58%), Gaps = 20/295 (6%)

Query: 40  GLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVY 99
           GL  + L+   ++S +AEL      +  S +   ++  +LA   K YL  L  P+IP   
Sbjct: 143 GLECSTLYRTQSSSNLAELRQLLDCDTASVDLEMIDVHVLADAFKRYLLDLPNPVIPAAV 202

Query: 100 YEKFVSLLS--GSNDRHIGSRLFALVQD--FPAHHFSALRYLMAHLARMCALQYARGVRE 155
           Y + +SL     S++ +I   L  L++    P  ++  L+YL+ H  ++   Q +     
Sbjct: 203 YSEMISLAQEVQSSEEYI-QLLKKLIRSPSIPHQYWLTLQYLLKHFFKLS--QTSSKNLL 259

Query: 156 PPTILIQSFTFVLPTFSSPPALPPRKLSPRPS---ATYVHSRQSSLDVAKM--------S 204
              +L + F+ +L  FS+  +     L        +T  + RQ +  +           +
Sbjct: 260 NARVLSEIFSPMLFRFSAASSDNTENLIKVIEILISTEWNERQPAPALPPKPPKPTTVAN 319

Query: 205 SGPETN-SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNK 262
           +G   N SL+DAEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NK
Sbjct: 320 NGMNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNK 379

Query: 263 LIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
           LIKIFHR+G+YGFS+P  F SVVELIN+Y++ESL+QYN  LD +LLYPVS++  D
Sbjct: 380 LIKIFHRDGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 434

Binds to activated (phosphorylated) protein-Tyr kinases, through its SH2 domain, and acts as an adapter, mediating the association of the p110 catalytic unit to the plasma membrane. Necessary for the insulin-stimulated increase in glucose uptake and glycogen synthesis in insulin-sensitive tissues. Plays an important role in signaling in response to FGFR1, FGFR2, FGFR3, FGFR4, KITLG/SCF, KIT, PDGFRA and PDGFRB. Likewise, plays a role in ITGB2 signaling.

Pongo abelii (taxid: 9601)

>sp|P27986|P85A_HUMAN Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Homo sapiens GN=PIK3R1 PE=1 SV=2

 Score =  196 bits (499), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/295 (41%), Positives = 175/295 (59%), Gaps = 20/295 (6%)

Query: 40  GLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVY 99
           GL  + L+   ++S +AEL      +  S +   ++  +LA   K YL  L  P+IP   
Sbjct: 143 GLECSTLYRTQSSSNLAELRQLLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAV 202

Query: 100 YEKFVSLL--SGSNDRHIGSRLFALVQD--FPAHHFSALRYLMAHLARMCALQYARGVRE 155
           Y + +SL     S++ +I   L  L++    P  ++  L+YL+ H  ++   Q +     
Sbjct: 203 YSEMISLAPEVQSSEEYI-QLLKKLIRSPSIPHQYWLTLQYLLKHFFKLS--QTSSKNLL 259

Query: 156 PPTILIQSFTFVLPTFSSPPALPPRKLSPRPS---ATYVHSRQSSLDVAKM--------S 204
              +L + F+ +L  FS+  +     L        +T  + RQ +  +           +
Sbjct: 260 NARVLSEIFSPMLFRFSAASSDNTENLIKVIEILISTEWNERQPAPALPPKPPKPTTVAN 319

Query: 205 SGPETN-SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNK 262
           +G   N SL+DAEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NK
Sbjct: 320 NGMNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNK 379

Query: 263 LIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
           LIKIFHR+G+YGFS+P  F+SVVELIN+Y++ESL+QYN  LD +LLYPVS++  D
Sbjct: 380 LIKIFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 434

Binds to activated (phosphorylated) protein-Tyr kinases, through its SH2 domain, and acts as an adapter, mediating the association of the p110 catalytic unit to the plasma membrane. Necessary for the insulin-stimulated increase in glucose uptake and glycogen synthesis in insulin-sensitive tissues. Plays an important role in signaling in response to FGFR1, FGFR2, FGFR3, FGFR4, KITLG/SCF, KIT, PDGFRA and PDGFRB. Likewise, plays a role in ITGB2 signaling.

Homo sapiens (taxid: 9606)

>sp|Q63788|P85B_RAT Phosphatidylinositol 3-kinase regulatory subunit beta OS=Rattus norvegicus GN=Pik3r2 PE=2 SV=1

 Score =  196 bits (498), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 139/226 (61%), Gaps = 48/226 (21%)

Query: 126 FPAHHFSALRYLMAHLARMC-----------ALQYARG---VREPP-------------- 157
            P H    LR+L+ HL R+            AL  A G   +R PP              
Sbjct: 214 LPLHQALTLRFLLQHLGRVARRAPSPATAVHALASAFGPLLLRAPPPGGEGDGSEPAPDF 273

Query: 158 -TILIQSFT--FVLPTFSSPPALPPR--KLSPRPSATYVHSRQSSLDVAKMSSGPETNSL 212
             +L++      V    ++PPALPP+  K+ P P+A              +++G  T SL
Sbjct: 274 PVLLLERLVQEHVDEQDTAPPALPPKPSKVKPAPTA--------------LANGGSTPSL 319

Query: 213 RDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHRNG 271
           +DAEWYWGDISR++VN++L DT DGTFLVRD S+K  GEYTLTLRKGG NKLIK+FHR+G
Sbjct: 320 QDAEWYWGDISREEVNERLRDTPDGTFLVRDASSKIQGEYTLTLRKGGNNKLIKVFHRDG 379

Query: 272 RYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
            YGFSEP  F SVVELI++Y+HESL+QYN+ LDTRLLYPVS++  D
Sbjct: 380 HYGFSEPLTFCSVVELISHYRHESLAQYNAKLDTRLLYPVSKYQQD 425

Binds to activated (phosphorylated) protein-tyrosine kinases, through its SH2 domain, and acts as an adapter, mediating the association of the p110 catalytic unit to the plasma membrane.

Rattus norvegicus (taxid: 10116)

>sp|P23727|P85A_BOVIN Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Bos taurus GN=PIK3R1 PE=1 SV=1

 Score =  193 bits (491), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/297 (41%), Positives = 169/297 (56%), Gaps = 24/297 (8%)

Query: 40  GLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVY 99
           GL  + L+   ++S  AEL      +  S +    +  +LA   K YL  L  P+IP   
Sbjct: 143 GLECSTLYRTQSSSNPAELRQLLDCDTASLDLEMFDVHVLADAFKRYLLDLPNPVIPVAV 202

Query: 100 YEKFVSLL--SGSNDRHIGSRLFALVQ--DFPAHHFSALRYLMAHLARMCA-----LQYA 150
             + +SL     S++ +I   L  L++    P  ++  L+YL+ H  ++       L  A
Sbjct: 203 SSELISLAPEVQSSEEYI-QLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNA 261

Query: 151 RGVREPPTILIQSFTFVLPTFSSPPALPPRKLSPRPSATYVHSRQSSLDVAKM------- 203
           R + E    L     F  P  SS       K+     +T  + RQ +  +          
Sbjct: 262 RVLSE----LFSPLLFRFPAASSENTEHLIKIIEILISTEWNERQPAPALPPKPPKPTTV 317

Query: 204 -SSGPETN-SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGT 260
            ++G   N SL+DAEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG 
Sbjct: 318 ANNGMNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGN 377

Query: 261 NKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
           NKLIKIFHR+G+YGFS+P  F SVVELIN+Y++ESL+QYN  LD +LLYPVS++  D
Sbjct: 378 NKLIKIFHRDGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 434

Binds to activated (phosphorylated) protein-Tyr kinases, through its SH2 domain, and acts as an adapter, mediating the association of the p110 catalytic unit to the plasma membrane. Necessary for the insulin-stimulated increase in glucose uptake and glycogen synthesis in insulin-sensitive tissues. Plays an important role in signaling in response to FGFR1, FGFR2, FGFR3, FGFR4, KITLG/SCF, KIT, PDGFRA and PDGFRB. Likewise, plays a role in ITGB2 signaling.

Bos taurus (taxid: 9913)

>sp|Q63787|P85A_RAT Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Rattus norvegicus GN=Pik3r1 PE=1 SV=1

 Score =  191 bits (486), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 122/297 (41%), Positives = 167/297 (56%), Gaps = 24/297 (8%)

Query: 40  GLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVY 99
           GL  + L+   ++S  AEL      +  S +    +  +LA   K YL  L  P+IP   
Sbjct: 143 GLECSTLYRTQSSSNPAELRQLLDCDPPSVDLDVFDEHVLADAFKRYLADLPNPVIPVAV 202

Query: 100 YEKFVSLLSG--SNDRHIGSRLFALVQ--DFPAHHFSALRYLMAHLARMCA-----LQYA 150
           Y + +SL     S++ +I   L  L++  + P  ++  L+YL+ H  ++       L  A
Sbjct: 203 YNEMMSLAQEVPSSEDYI-QLLKKLIRSPNIPHQYWLTLQYLLKHFFKLSQASSKNLLNA 261

Query: 151 RGVREPPTILIQSFTFVLPTFSSP---------PALPPRKLSPRPSATYVHSRQSSLDVA 201
           R + E    +     F  P  SS            L   + S R  A  +  +       
Sbjct: 262 RALSE----IFSHVLFRFPAASSDNTEHLIKAVELLISAEWSERQPAPALPPKPPKPTSI 317

Query: 202 KMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGT 260
             +S     SL+DAEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG 
Sbjct: 318 ANNSMNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGN 377

Query: 261 NKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
           NKLIKIFHR+G+YGFS+P  F SVVELIN+Y++ESL+QYN  LD +LLYPVS++  D
Sbjct: 378 NKLIKIFHRDGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 434

Binds to activated (phosphorylated) protein-Tyr kinases, through its SH2 domain, and acts as an adapter, mediating the association of the p110 catalytic unit to the plasma membrane. Necessary for the insulin-stimulated increase in glucose uptake and glycogen synthesis in insulin-sensitive tissues. Plays an important role in signaling in response to FGFR1, FGFR2, FGFR3, FGFR4, KITLG/SCF, KIT, PDGFRA and PDGFRB. Likewise, plays a role in ITGB2 signaling.

Rattus norvegicus (taxid: 10116)

>sp|P26450|P85A_MOUSE Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Mus musculus GN=Pik3r1 PE=1 SV=2

 Score =  191 bits (486), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 121/296 (40%), Positives = 163/296 (55%), Gaps = 22/296 (7%)

Query: 40  GLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVY 99
           GL  + L+   ++S  AEL      +  S +   ++  +LA   K YL  L  P+IP   
Sbjct: 143 GLECSTLYRTQSSSNPAELRQLLDCDAASVDLEMIDVHVLADAFKRYLADLPNPVIPVAV 202

Query: 100 YEKFVSL---LSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA-----LQYAR 151
           Y + +SL   L    D     +    + + P   +  L+YL+ H  ++       L  AR
Sbjct: 203 YNEMMSLAQELQSPEDCIQLLKKLIRLPNIPHQCWLTLQYLLKHFFKLSQASSKNLLNAR 262

Query: 152 GVREPPTILIQSFTFVLPTFSSPPALPPRKLSPRPSATYVHSRQSSLDVAKMSSGPET-- 209
            + E    +     F  P  SS       K      +T  + RQ +  +      P T  
Sbjct: 263 VLSE----IFSPVLFRFPAASSDNTEHLIKAIEILISTEWNERQPAPALPPKPPKPTTVA 318

Query: 210 -------NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTN 261
                   SL+DAEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG N
Sbjct: 319 NNSMNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNN 378

Query: 262 KLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
           KLIKIFHR+G+YGFS+P  F SVVELIN+Y++ESL+QYN  LD +LLYPVS++  D
Sbjct: 379 KLIKIFHRDGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 434

Binds to activated (phosphorylated) protein-Tyr kinases, through its SH2 domain, and acts as an adapter, mediating the association of the p110 catalytic unit to the plasma membrane. Necessary for the insulin-stimulated increase in glucose uptake and glycogen synthesis in insulin-sensitive tissues. Plays an important role in signaling in response to FGFR1, FGFR2, FGFR3, FGFR4, KITLG/SCF, KIT, PDGFRA and PDGFRB. Likewise, plays a role in ITGB2 signaling.

Mus musculus (taxid: 10090)

>sp|O00459|P85B_HUMAN Phosphatidylinositol 3-kinase regulatory subunit beta OS=Homo sapiens GN=PIK3R2 PE=1 SV=2

 Score =  181 bits (460), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 82/116 (70%), Positives = 99/116 (85%), Gaps = 1/116 (0%)

Query: 203 MSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTN 261
           +++G    SL+DAEWYWGDISR++VN+KL DT DGTFLVRD S+K  GEYTLTLRKGG N
Sbjct: 316 LANGGSPPSLQDAEWYWGDISREEVNEKLRDTPDGTFLVRDASSKIQGEYTLTLRKGGNN 375

Query: 262 KLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
           KLIK+FHR+G YGFSEP  F SVV+LIN+Y+HESL+QYN+ LDTRLLYPVS++  D
Sbjct: 376 KLIKVFHRDGHYGFSEPLTFCSVVDLINHYRHESLAQYNAKLDTRLLYPVSKYQQD 431

Binds to activated (phosphorylated) protein-tyrosine kinases, through its SH2 domain, and acts as an adapter, mediating the association of the p110 catalytic unit to the plasma membrane.

Homo sapiens (taxid: 9606)

>sp|P23726|P85B_BOVIN Phosphatidylinositol 3-kinase regulatory subunit beta OS=Bos taurus GN=PIK3R2 PE=1 SV=1

 Score =  180 bits (457), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/278 (41%), Positives = 147/278 (52%), Gaps = 38/278 (13%)

Query: 70  NFSKLEPALLAIMLKTYLKSLTEPLI-PYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPA 128
           +  + + A L+  +K +L +L  PL+ P    E   +L   +    +G  L       P 
Sbjct: 158 DVEQWDAAALSDGVKGFLLALPAPLVTPEAAAEAHRALREAAGP--VGPALEPPT--LPL 213

Query: 129 HHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVL-------------------- 168
           HH   LR+L+ HL R+     A G    P +     TF                      
Sbjct: 214 HHALTLRFLLQHLGRVAGRAPAPG----PAVRALGATFGPLLLRAPPPPSPPPGGAPDGT 269

Query: 169 -PTFSSPPALPPRKLSPRPSATYVHSRQSSLDVAK-------MSSGPETNSLRDAEWYWG 220
            PT   P  L  + L        V          K       +++G    SL+DAEWYWG
Sbjct: 270 EPTPDFPALLVEKLLQEHLEEQEVAPPALPPKPPKTKPAPTGLANGGSPPSLQDAEWYWG 329

Query: 221 DISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPF 279
           DISR++VN+KL DT DGTFLVRD S+K  GEYTLTLRKGG NKLIK+FHR+G YGFSEP 
Sbjct: 330 DISREEVNEKLRDTPDGTFLVRDASSKIQGEYTLTLRKGGNNKLIKVFHRDGHYGFSEPL 389

Query: 280 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
            F SVV+LI +Y+HESL+QYN+ LDTRLLYPVS++  D
Sbjct: 390 TFCSVVDLITHYRHESLAQYNAKLDTRLLYPVSKYQQD 427

Binds to activated (phosphorylated) protein-tyrosine kinases, through its SH2 domain, and acts as an adapter, mediating the association of the p110 catalytic unit to the plasma membrane.

Bos taurus (taxid: 9913)

>sp|O08908|P85B_MOUSE Phosphatidylinositol 3-kinase regulatory subunit beta OS=Mus musculus GN=Pik3r2 PE=1 SV=2

 Score =  180 bits (456), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 81/116 (69%), Positives = 99/116 (85%), Gaps = 1/116 (0%)

Query: 203 MSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTN 261
           +++G    SL+DAEWYWGDISR++VN++L DT DGTFLVRD S+K  GEYTLTLRKGG N
Sbjct: 310 LANGGSPPSLQDAEWYWGDISREEVNERLRDTPDGTFLVRDASSKIQGEYTLTLRKGGNN 369

Query: 262 KLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
           KLIK+FHR+G YGFSEP  F SVVELI++Y+HESL+QYN+ LDTRLLYPVS++  D
Sbjct: 370 KLIKVFHRDGHYGFSEPLTFCSVVELISHYRHESLAQYNAKLDTRLLYPVSKYQQD 425

Binds to activated (phosphorylated) protein-tyrosine kinases, through its SH2 domain, and acts as an adapter, mediating the association of the p110 catalytic unit to the plasma membrane.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	523
332018851	945	Phosphatidylinositol 3-kinase regulatory	0.868	0.480	0.390	1e-100
307172412	1185	Phosphatidylinositol 3-kinase regulatory	0.936	0.413	0.365	2e-98
322795970	774	hypothetical protein SINV_14862 [Solenop	0.938	0.634	0.366	2e-97
432104576	665	Phosphatidylinositol 3-kinase regulatory	0.896	0.705	0.376	3e-76
301610632	645	PREDICTED: phosphatidylinositol 3-kinase	0.860	0.697	0.36	7e-74
47216414	723	unnamed protein product [Tetraodon nigro	0.829	0.600	0.386	9e-73
3046406	402	phosphatidylinositol 3-kinase p55 gamma	0.575	0.748	0.466	2e-71
119627349	402	phosphoinositide-3-kinase, regulatory su	0.575	0.748	0.463	2e-71
395530300	822	PREDICTED: uncharacterized protein LOC10	0.634	0.403	0.435	7e-70
334321550	388	PREDICTED: phosphatidylinositol 3-kinase	0.573	0.773	0.461	1e-69

>gi|332018851|gb|EGI59407.1| Phosphatidylinositol 3-kinase regulatory subunit alpha [Acromyrmex echinatior]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/564 (39%), Positives = 295/564 (52%), Gaps = 110/564 (19%)

Query: 54  QVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDR 113
           Q+ EL    + ++ + + S   P  +A +LK +L+ L +P+IP  +Y++F+   +  +D 
Sbjct: 337 QIPELRQKLNEDVCNADLSPYTPQCIASVLKKFLRELPDPVIPVQWYDRFLDASNMRSDE 396

Query: 114 HIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFV------ 167
              +RL  LV + P HH S L +LMAH  R+C LQ+ RG  EPPTIL+Q    +      
Sbjct: 397 QCATRLNQLVAELPEHHRSTLCHLMAHFCRICQLQHGRGYTEPPTILVQVLCHIFLRPPW 456

Query: 168 -----------------------------LPTFSSPPALPPRKLS----------PRPSA 188
                                        LP F+SPP LPPRK+S          P    
Sbjct: 457 ERIIQVVHNTEAHIRIMELLLLHGDWSERLPEFASPPQLPPRKVSRPQFPILDPFPVLED 516

Query: 189 TYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKN 248
             V       D  K        +L++AEWYWG+I+RDDVN+ + D+ DGTFLVR+ S+K 
Sbjct: 517 ETVDKTAPGTDTGKDQQQHRPRTLQEAEWYWGEITRDDVNEMMIDSPDGTFLVRNASSKG 576

Query: 249 GEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLL 308
           GEYTLTLRKGGTNKLIKI HRNG+YGFS+P+ F SV+EL++YY++ SL+QYNS LD +LL
Sbjct: 577 GEYTLTLRKGGTNKLIKISHRNGKYGFSDPYNFHSVIELVDYYRNCSLAQYNSVLDIKLL 636

Query: 309 YPVSRFSSD------------------VDADI--------HSNDVDKNPAPGV------L 336
           YPVSRF  D                  +D DI        H +D+    A  V      L
Sbjct: 637 YPVSRFQQDDEIANTTDMAKVRQKYFELDKDINDTIRQYQHCSDLYSKTAYEVQLKRNAL 696

Query: 337 RTFSEPFK-FTSVVELINYYKHESLSQY------NSTLDTRLLYPVSRFSSDVDADIHSN 389
             F+E  K F   ++L    K E+          NS L  R L  +      +D  +   
Sbjct: 697 EAFTEAIKMFEEQIKLQERCKIEAQPHEISTLTDNSELLKRRLKALEDSKEQLDESL-KQ 755

Query: 390 DVDKYINLKIAFTNLSGAVA----------------------STVDF--ESGEKTWL-VR 424
            +  Y  L+     L   +                         VDF   S EKTWL ++
Sbjct: 756 QIAYYRTLEREMYKLKSEIGVLVRQKDRHSQWLKKNEIKQNKEEVDFAVHSDEKTWLFLK 815

Query: 425 MSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYP 484
            SR+ A+ +L GRPDGTFL+R S TGQYALSIVC+   +HC++Y TERG+GFAEP+NI+ 
Sbjct: 816 GSRSDADLILKGRPDGTFLVRRSRTGQYALSIVCNDTVQHCIIYATERGYGFAEPYNIHE 875

Query: 485 SLGALVLHYAANSLEEHNDDLKTT 508
           +L  LVLHYA NSLEEHN+ L TT
Sbjct: 876 TLKHLVLHYAQNSLEEHNECLTTT 899

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172412|gb|EFN63874.1| Phosphatidylinositol 3-kinase regulatory subunit alpha [Camponotus floridanus]

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 220/602 (36%), Positives = 314/602 (52%), Gaps = 112/602 (18%)

Query: 14   NVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA--SQVAELFHAYSGEIKSYNF 71
            ++ + ++P   +    A E  +  D  L    ++   N    Q  EL    + ++ + + 
Sbjct: 544  DIVTHSAPVLVERCTHALEQRAFADTKLDLYKVYHNSNTPNEQTLELRQKLNEDVYNADL 603

Query: 72   SKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHF 131
            S   P  +A +LK +L+ L +P+IP  +Y++F+   S  +D    +RL  LV + P HH 
Sbjct: 604  SPYTPQCIASVLKKFLRELPDPVIPVQWYDRFLEASSMRSDEQCAARLNQLVAELPEHHR 663

Query: 132  SALRYLMAHLARMCALQYARGVREPPTILIQSFTFV------------------------ 167
            S L +LMAH  R+C LQ+AR   E PTIL+Q    +                        
Sbjct: 664  STLCHLMAHFCRICQLQHARAYTEQPTILVQMLCHIFLRPPWERIIQVVHNTEAHIRIME 723

Query: 168  -----------LPTFSSPPALPPRKLSPRPSATYVHSRQSSLDVAKMSSGPETN------ 210
                       LP F+SPP LPPRK+S RP  + V       D    +  P  +      
Sbjct: 724  LLLLHGDWNERLPEFASPPQLPPRKVS-RPHFSIVDPSLEG-DAVDRTVQPGADQQPHRP 781

Query: 211  -SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR 269
             +L++AEWYWGDI+RDDVN+ + D+ DGTFLVR+ S+K GEYTLTLRKGGTNKLIKI HR
Sbjct: 782  RTLQEAEWYWGDITRDDVNEMMIDSPDGTFLVRNASSKCGEYTLTLRKGGTNKLIKISHR 841

Query: 270  NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSN---- 325
            NG+YGFS+P+ F SV+EL++YY++ SL+QYN+ LD +LLYPVSRF  + +    ++    
Sbjct: 842  NGKYGFSDPYNFHSVIELVDYYRNCSLAQYNAVLDIKLLYPVSRFQQEDEITNTTDMAKV 901

Query: 326  -----DVDKNPAPGV-----------------------LRTFSEPFK-FTSVVELINYYK 356
                 D++K  + G+                       +  F E  K F   + L + ++
Sbjct: 902  LQKFLDLEKEVSDGIRQYHNCWDLYTKTSSEVELKTQAMEAFQEAIKMFEEQIRLQDEFR 961

Query: 357  HESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNL-----------S 405
             E+     STL         R  +  D+ I    + + +N + A+              +
Sbjct: 962  KEAQPHEISTLTDNSELLQRRLKALRDSKIQ---LQENLNQQTAYNRTLERETCRLKSET 1018

Query: 406  GAVASTVD------------------FESGEKTWL-VRMSRAQAEALLSGRPDGTFLIRP 446
            G +A   D                    S EKTWL ++ SR  A+ +L G+PDGTFL+R 
Sbjct: 1019 GQLARQRDRYALWLKKNGIKQNKDFAIHSDEKTWLYLQGSRPDADRILKGKPDGTFLVRR 1078

Query: 447  STTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLK 506
            S TGQYALSIVC+G  +HC++Y TERG+GFAEP+NI+ SL  LVLHYA NSLEEHN+ L 
Sbjct: 1079 SRTGQYALSIVCNGVVQHCIIYGTERGYGFAEPYNIHQSLKHLVLHYAQNSLEEHNECLT 1138

Query: 507  TT 508
            TT
Sbjct: 1139 TT 1140

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795970|gb|EFZ18596.1| hypothetical protein SINV_14862 [Solenopsis invicta]

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 224/611 (36%), Positives = 310/611 (50%), Gaps = 120/611 (19%)

Query: 14  NVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFE--PGNASQVAELFHAYSGEIKSYNF 71
           + +S T+P   +    A E  +  D  L    ++   P N  Q  +L    + ++ + + 
Sbjct: 147 DTASRTAPILVERCTRALEEQAFADTTLDLYKVYHSSPPN-EQTLKLRQKLNEDVCNTDL 205

Query: 72  SKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLL-SGSNDRHIGSRLFALVQDFPAHH 130
           S   P  +  +LK +L+ L +P+IP  +Y++F+    +  +D    ++L  LV + P HH
Sbjct: 206 SLYTPQCITSVLKKFLRELPDPVIPVQWYDRFLDAANTRCSDEQCATQLNQLVAELPEHH 265

Query: 131 FSALRYLMAHLARMCALQYARGVREPPTILIQSFTFV----------------------- 167
            S L +LMAH  R+C LQ+ RG  EPPTIL+Q    +                       
Sbjct: 266 RSTLCHLMAHFCRICQLQHGRGYTEPPTILVQVLCHIFLRPPWERIIQVVYNTEAHIRIT 325

Query: 168 ------------LPTFSSPPALPPRKLSPRPS-----------ATYVHSRQSSLDVAKMS 204
                       LP F+SPP LPPRK+S RP               V    S  D  K  
Sbjct: 326 ELLLLHGDWNEKLPEFASPPQLPPRKVS-RPQFPILDPYSVLEDEAVDRTASGADTGKDQ 384

Query: 205 SGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLI 264
                 +L++AEWYWGDI+R++VN+ + D+ DGTFLVR+ S+K GEYTLTLRKGGTNKLI
Sbjct: 385 QTHRPRTLQEAEWYWGDITREEVNEMMIDSPDGTFLVRNASSKGGEYTLTLRKGGTNKLI 444

Query: 265 KIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD------- 317
           KI HRNG+YGFS+P+ F SV+EL++YY++ SL+QYNS LD +LLYPVSRF  +       
Sbjct: 445 KISHRNGKYGFSDPYNFHSVIELVDYYRNCSLAQYNSVLDIKLLYPVSRFQQEDEIANTT 504

Query: 318 ---------VDADIHSNDVDKN----------------PAPGVLRTFSEPFK-FTSVVEL 351
                    V+ D   ND+ +                      L  F+E  K F   ++L
Sbjct: 505 DMTKVYQKFVELDKEVNDMVRQYQVCSDLCLKTANEVTLKRQALEAFTEAIKMFEEQMKL 564

Query: 352 INYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFT--------- 402
              ++ E+     STL         R     D+      +D+ +  ++A+          
Sbjct: 565 QEKFQKEAQPHEISTLTDNSELLKQRLKGLEDS---KEQLDENLKQRVAYCRTLEREMYK 621

Query: 403 ---------------------NLSGAVASTVDF--ESGEKTWL-VRMSRAQAEALLSGRP 438
                                N        +DF   S EKTWL ++ SR  A+ +L GRP
Sbjct: 622 LRSEIGLLVRQKERHHAWLKKNELKQNKEEMDFAVHSDEKTWLYLQCSRPDADHILKGRP 681

Query: 439 DGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSL 498
           DGTFL+R S TGQYALSIVC+G  +HC++Y TERGFGFAEP+NI+ SL  LVLHYA NSL
Sbjct: 682 DGTFLVRRSRTGQYALSIVCNGTVQHCIIYATERGFGFAEPYNIHESLRHLVLHYAHNSL 741

Query: 499 EEHNDDLKTTL 509
           EEHN+ L TTL
Sbjct: 742 EEHNECLTTTL 752

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432104576|gb|ELK31188.1| Phosphatidylinositol 3-kinase regulatory subunit alpha [Myotis davidii]

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 198/526 (37%), Positives = 276/526 (52%), Gaps = 57/526 (10%)

Query: 40  GLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVY 99
           GL  + L+   ++S  AEL      +  S +   ++  +LA   K YL  L  P+IP   
Sbjct: 143 GLECSTLYRAQSSSNPAELRQLLDCDAASVDLETVDVQVLADAFKRYLSDLPNPVIPVAV 202

Query: 100 YEKFVSLLS--GSNDRHIGSRLFALVQ--DFPAHHFSALRYLMAHLARMCALQYARGVRE 155
           Y + +SL     S++ +I   L  L++  + P  ++  L+YL+ H  ++   Q +     
Sbjct: 203 YNEMISLAQEVQSSEDYI-QLLKKLIRSPNIPHQYWLTLQYLLKHFFKLS--QSSSKNLL 259

Query: 156 PPTILIQSFT---FVLPTFSSPPALPPRKLSPRPSATYVHSRQSSLDVAKM--------S 204
              +L + F+   F  P  SS  A P RK+     +T    RQ +  +           +
Sbjct: 260 TAGVLSELFSPLLFRFPAASSENAEPLRKVIEILISTEWSERQPAPALPPKPPKPTTVAN 319

Query: 205 SGPETN-SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNK 262
           +G   N SL+DAEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NK
Sbjct: 320 NGMNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNK 379

Query: 263 LIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD----- 317
           LIKIFHR+G+YGFS+P  F SVVELIN+Y++ESL+QYN  LD +LLYPVS++  D     
Sbjct: 380 LIKIFHRDGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVVKE 439

Query: 318 -----VDADIHSNDVDKNPAPGVLRTFSEPFKFTS--------VVELINYYKHESLSQYN 364
                V   +H  +              E +  TS         +E  N    E++  + 
Sbjct: 440 DNIEAVGKKLHEYNTQFQEKSREYDRLYEDYTRTSQEIQMKRTAIEAFN----ETIKIFE 495

Query: 365 STLDTRLLYP---VSRFSSDVDAD------IHSNDVDKYINLKIAFTNLSGAVASTVDFE 415
               T+  Y    + +F  + +               K +N  +   N     +   D E
Sbjct: 496 EQCQTQERYSKEYIEKFKREGNEKEIQRWLTQKGVRQKKLNEWLGNENTEDQYSLVEDDE 555

Query: 416 S----GEKTWLVRMS-RAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYE 469
                 EKTW V  S R +AE LL G+ DGTFL+R S+  G YA S+V  G  KHC++ +
Sbjct: 556 DLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINK 615

Query: 470 TERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 515
           T  G+GFAEP+N+Y SL  LVLHY   SL +HND L  TLAYPV+A
Sbjct: 616 TATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 661

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301610632|ref|XP_002934855.1| PREDICTED: phosphatidylinositol 3-kinase regulatory subunit beta-like [Xenopus (Silurana) tropicalis]

 Score =  284 bits (727), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 180/500 (36%), Positives = 260/500 (52%), Gaps = 50/500 (10%)

Query: 56  AELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPY-VYYEKFVSLLSGSNDRH 114
           +E  H    ++ S      +   LA  +  +L+ L  P+IP  V+ E   +LL  S++  
Sbjct: 154 SEFRHTLQTDLSSVELEATDVHSLAEAVMVFLQELPSPVIPVQVHQEIIQALLETSDEEQ 213

Query: 115 IGSRLFALVQD--FPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFS 172
              ++  ++Q    P HH    ++++ H+  MC+   + G+       I     + P  +
Sbjct: 214 KRMQISLIIQPPVVPLHHVLTFQHILRHIVNMCS--ESSGLTHKMAAEIFGPLLLRPVIT 271

Query: 173 SPPALP------------PRKLSPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWG 220
              ALP             R L        +  + +      +++     +L++AEWYWG
Sbjct: 272 GAEALPDFPVLLLELLLQDRGLQNDQPPPALPPKPTKPKPPMVTASGGGGTLQEAEWYWG 331

Query: 221 DISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPF 279
           DISR++VNDKL DT DGTFLVRD S+K  GEYTLTLRKGG N+LIKIFHR+  YGFSEP 
Sbjct: 332 DISREEVNDKLRDTPDGTFLVRDASSKIRGEYTLTLRKGGNNRLIKIFHRDDMYGFSEPL 391

Query: 280 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTF 339
            FTSVV LIN+Y+HESL+QYN+ LDTRLLYP+S++           +  +     + R  
Sbjct: 392 TFTSVVALINHYRHESLAQYNAKLDTRLLYPMSKYQQXXXXXXXXXNNKE-----IERIM 446

Query: 340 SEPFKFTSVVELINYYKH------ESLSQYNSTLDTRL------LYPVSRFSSD-----V 382
               K  S V  I+  K       +  +  N  +D ++      L  + +         +
Sbjct: 447 MNSEKLKSRVTEIHDSKMKLEQDLKKQASENREIDKKMNSLKPDLMQLRKLRDQYLLWLL 506

Query: 383 DADIHSNDVDKYINLKIAFTNLSGAVASTVDFES----GEKTW-LVRMSRAQAEALLSGR 437
           +      DV +++++K    N      S +D E      E TW + +M R QAE +L+G+
Sbjct: 507 EKGARQKDVSEWLDMK----NEPEDPYSMMDDEDLPHHEEHTWYMGKMKREQAEEMLAGK 562

Query: 438 PDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAAN 496
           PDGTFLIR S   G YA S+V     KHC++Y+   G+GFAEP+N+Y SL  LVLHY   
Sbjct: 563 PDGTFLIRVSRQKGCYACSVVVDSDTKHCMIYKAATGYGFAEPYNLYSSLKELVLHYQHT 622

Query: 497 SLEEHNDDLKTTLAYPVFAP 516
           SL +HND L  TL+YPV AP
Sbjct: 623 SLVQHNDALNVTLSYPVLAP 642

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47216414|emb|CAG01965.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  280 bits (717), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 205/531 (38%), Positives = 262/531 (49%), Gaps = 97/531 (18%)

Query: 77  ALLAIMLKTYLKSLTEPLIPYVYYEKFVS---------------LLSGSNDRHIGSRLFA 121
           A L+  +  YLK+L  PLIP   Y +  +                L    DR + S +  
Sbjct: 194 AYLSECVLRYLKALPSPLIPACIYPQLQTAVGLTQQALNQAAGGTLGEGQDREV-SLVIE 252

Query: 122 LVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSSPPALPPRK 181
                P HH   L++L+ HLA++   Q + G+      L Q F  +L   S+     P  
Sbjct: 253 KATTVPLHHRLTLQFLLTHLAKVTQAQASNGLD--AQTLGQIFGPLLVWSSTSAHWTP-- 308

Query: 182 LSPRPSATYVH----SRQSSLDV---------AKMSSGP----ETNSL-RDAEWYWGDIS 223
           L    + T V      R +  DV         AK    P    +T+SL  DAEWYWG+IS
Sbjct: 309 LDEGFAETVVEKLLTERTTEQDVTPPVLPAKPAKSKVAPSAMTDTSSLLNDAEWYWGEIS 368

Query: 224 RDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFT 282
           R++VN+KL DT DGTFLVRD S+K  GEYTLTLRKGG NKLIKI+HR GRYGFSEP  F 
Sbjct: 369 REEVNEKLRDTPDGTFLVRDASSKLEGEYTLTLRKGGNNKLIKIYHREGRYGFSEPLTFL 428

Query: 283 SVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDAD-----------IHSNDVDKNP 331
           SVVELIN+Y+HESL+QYN+ LDT+LLYPVS++   V  +            H    +K+ 
Sbjct: 429 SVVELINHYRHESLAQYNAKLDTKLLYPVSKYQQLVKENSIEEVGEQLKVYHDQYQEKSR 488

Query: 332 APGVL--------------RTFSEPFK-----FTSVVELINYYKHESLSQYNSTLDTRLL 372
               L              RT  E F      F    E    Y  ESL ++    + + +
Sbjct: 489 EYDCLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCETQERYSRESLERFQREGNEKEI 548

Query: 373 YPVS----RFSSDV----------DAD-------IHSNDVDKYINLKIAFTNLSGAVAST 411
             +     R  S V          + D       I      K IN  +   N +    S 
Sbjct: 549 QKIQSNSERLKSRVKEIHDSKRKLEQDLRQQAWLIQKGTRQKKINEWLGIKNEADDSYSL 608

Query: 412 VDFESG----EKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKH 464
            + ES     E TW V  + R+QAE +L G  DGTFLIR S T  G YA S+V  G  KH
Sbjct: 609 EEDESSPHHDESTWYVGDIKRSQAEEMLRGTCDGTFLIRESQTQKGSYACSVVVDGDTKH 668

Query: 465 CLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 515
           C+VY+T  G+GFAEP+N+Y SL  LVLHY   SL +HND L  TLA+PV A
Sbjct: 669 CVVYKTVTGYGFAEPYNLYSSLKDLVLHYKNVSLVQHNDHLNVTLAHPVLA 719

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|3046406|gb|AAC39696.1| phosphatidylinositol 3-kinase p55 gamma regulatory subunit [Homo sapiens]

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 159/341 (46%), Positives = 203/341 (59%), Gaps = 40/341 (11%)

Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHR 269
           SL+DAEWYWGDISR++VNDKL D  DGTFLVRD STK  G+YTLTLRKGG NKLIKI+HR
Sbjct: 59  SLQDAEWYWGDISREEVNDKLRDMPDGTFLVRDASTKMQGDYTLTLRKGGNNKLIKIYHR 118

Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD-------VDA-- 320
           +G+YGFS+P  F SVVELIN+Y HESL+QYN  LD +L+YPVSR+  D       +DA  
Sbjct: 119 DGKYGFSDPLTFNSVVELINHYHHESLAQYNPKLDVKLMYPVSRYQQDQLVKEDNIDAVG 178

Query: 321 ----DIHSNDVDKNPAPGVL-----RTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRL 371
               + HS   +K+     L     RT  E     + +E  N    E++  +     T+ 
Sbjct: 179 KKLQEYHSQYQEKSKEYDRLYEEYTRTSQEIQMKRTAIEAFN----ETIKIFEEQCHTQE 234

Query: 372 LYP---VSRFSSD-VDADI-----HSNDVDKYINLKIAFTNLSGAVASTVDFES------ 416
            +    + RF  +  + +I     H     K +N+ +   N        ++ E       
Sbjct: 235 QHSKEYIERFRREGNEKEIERWLNHKGVRQKRLNVWLGIKNEDADENYFINEEDENLPHY 294

Query: 417 GEKTWLVR-MSRAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGF 474
            EKTW V  ++R QAE LL G+PDG FLIR S+  G YA S+V  G  KHC++Y T RG+
Sbjct: 295 DEKTWFVEDINRVQAEDLLYGKPDGAFLIRESSKKGCYACSVVADGEVKHCVIYSTARGY 354

Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 515
           GFAEP+N+Y SL  LVLHY   SL +HND L   LAYPV A
Sbjct: 355 GFAEPYNLYSSLKELVLHYQQTSLVQHNDSLNVRLAYPVHA 395

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119627349|gb|EAX06944.1| phosphoinositide-3-kinase, regulatory subunit 3 (p55, gamma), isoform CRA_b [Homo sapiens]

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 158/341 (46%), Positives = 201/341 (58%), Gaps = 40/341 (11%)

Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHR 269
           SL+DAEWYWGDISR++VNDKL D  DGTFLVRD STK  G+YTLTLRKGG NKLIKI+HR
Sbjct: 59  SLQDAEWYWGDISREEVNDKLRDMPDGTFLVRDASTKMQGDYTLTLRKGGNNKLIKIYHR 118

Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD-------VDA-- 320
           +G+YGFS+P  F SVVELIN+Y HESL+QYN  LD +L+YPVSR+  D       +DA  
Sbjct: 119 DGKYGFSDPLTFNSVVELINHYHHESLAQYNPKLDVKLMYPVSRYQQDQLVKEDNIDAVG 178

Query: 321 ----DIHSNDVDKNPAPGVL-----RTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRL 371
               + HS   +K+     L     RT  E     + +E  N    E++  +     T+ 
Sbjct: 179 KKLQEYHSQYQEKSKEYDRLYEEYTRTSQEIQMKRTAIEAFN----ETIKIFEEQCHTQE 234

Query: 372 LYP---VSRFSSDVDADI------HSNDVDKYINLKIAFTNLSGAVASTVDFES------ 416
            +    + RF  + +         H     K +N+ +   N        ++ E       
Sbjct: 235 QHSKEYIERFRREGNEKEIERWLNHKGVRQKRLNVWLGIKNEDADENYFINEEDENLPHY 294

Query: 417 GEKTWLVR-MSRAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGF 474
            EKTW V  ++R QAE LL G+PDG FLIR S+  G YA S+V  G  KHC++Y T RG+
Sbjct: 295 DEKTWFVEDINRVQAEDLLYGKPDGAFLIRESSKKGCYACSVVADGEVKHCVIYSTARGY 354

Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 515
           GFAEP+N+Y SL  LVLHY   SL +HND L   LAYPV A
Sbjct: 355 GFAEPYNLYSSLKELVLHYQQTSLVQHNDSLNVRLAYPVHA 395

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395530300|ref|XP_003767234.1| PREDICTED: uncharacterized protein LOC100935230 [Sarcophilus harrisii]

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 169/388 (43%), Positives = 221/388 (56%), Gaps = 56/388 (14%)

Query: 165 TFVLPTFSSPPALPPRKLSPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISR 224
           +  +P   S P  PP+ L+           Q+  +  K SSG    SL DAEWYWGDISR
Sbjct: 447 SLRVPRLGSLPPKPPKSLT-----------QAGANGLKDSSG---FSLPDAEWYWGDISR 492

Query: 225 DDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTS 283
           ++VNDKL D  DGTFLVRD STK  G+YTLTLRKGG NKLIKI+HR+G+YGFS+P  F+S
Sbjct: 493 EEVNDKLRDMPDGTFLVRDASTKVQGDYTLTLRKGGNNKLIKIYHRDGKYGFSDPLTFSS 552

Query: 284 VVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD-------VDA------DIHSNDVDKN 330
           VVELIN+Y+HESL+QYN  LD +L+YP+SR+  D       +DA      + HS   +K+
Sbjct: 553 VVELINHYRHESLAQYNPKLDVKLMYPISRYQQDQLVKEDNIDAVGTKLQEYHSQYQEKS 612

Query: 331 PAPGVL-----RTFSE-PFKFTSVV---ELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 381
                L     RT  E   K T++    E I  ++ +  +Q   + D      + RF  +
Sbjct: 613 KEYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCATQERQSKDY-----IERFRRE 667

Query: 382 VDAD------IHSNDVDKYINLKIAFTNLSGAVASTVDFES------GEKTWLV-RMSRA 428
            +         H     K +N  +   N        ++ E        EKTW V  ++R 
Sbjct: 668 GNEKEIERWLSHKGVRQKRLNDWLGIKNDHIDETYFMNEEDENLPHYDEKTWFVGDLNRL 727

Query: 429 QAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLG 487
           QAE LL G+PDG FLIR S+  G YA S+V  G  KHC++Y T RG+GFAEP+N+Y SL 
Sbjct: 728 QAEDLLHGKPDGAFLIRESSKKGCYACSVVADGDVKHCVIYSTARGYGFAEPYNLYGSLK 787

Query: 488 ALVLHYAANSLEEHNDDLKTTLAYPVFA 515
            LVLHY   SL +HND L   LA+PV+A
Sbjct: 788 ELVLHYQHTSLVQHNDSLNVRLAHPVYA 815

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334321550|ref|XP_003340127.1| PREDICTED: phosphatidylinositol 3-kinase regulatory subunit gamma-like [Monodelphis domestica]

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 161/349 (46%), Positives = 210/349 (60%), Gaps = 49/349 (14%)

Query: 195 QSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTL 253
           Q+  + AK SSG    SL DAEWYWGDISR++VNDKL D  DGTFLVRD STK  G+YTL
Sbjct: 54  QAGANGAKDSSGF---SLPDAEWYWGDISREEVNDKLRDMPDGTFLVRDASTKVQGDYTL 110

Query: 254 TLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
           TLRKGG NKLIKI+HR+G+YGFS+P  F+SVVELIN+Y+HESL+QYN  LD +LLYP+SR
Sbjct: 111 TLRKGGNNKLIKIYHRDGKYGFSDPLTFSSVVELINHYRHESLAQYNPKLDVKLLYPISR 170

Query: 314 FSS----------DVDA------DIHSNDVDKNPAPGVL-----RTFSE-PFKFTSVV-- 349
           +            ++DA      + HS   DK+     L     RT  E   K T++   
Sbjct: 171 YQQGQGDQLVKEDNIDAVGTKLQEYHSQYQDKSREYDRLYEEYTRTSQEIQMKRTAIEAF 230

Query: 350 -ELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAV 408
            E I  ++ +  +Q   + D      + RF  + +      ++++   +K    N     
Sbjct: 231 NETIKIFEEQCQTQERQSKDY-----IERFRREGN----EKEIERTYFMKEEEENRP--- 278

Query: 409 ASTVDFESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCL 466
                    EKTW V  ++R QAE LL G+PDG FLIR S+  G YA S+V  G  KHC+
Sbjct: 279 ------HKDEKTWFVGDLNRLQAEDLLHGKPDGAFLIRESSKKGCYACSVVADGDVKHCV 332

Query: 467 VYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 515
           +Y T RG+GFAEP+N+Y +L  LVLHY   SL +HND L   LA+PV+A
Sbjct: 333 IYSTARGYGFAEPYNLYGTLKELVLHYQHTSLVQHNDSLNVRLAHPVYA 381

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	523
UNIPROTKB|O00459	728	PIK3R2 "Phosphatidylinositol 3	0.254	0.182	0.616	5.8e-79
UNIPROTKB|P23726	724	PIK3R2 "Phosphatidylinositol 3	0.254	0.183	0.609	5.1e-78
UNIPROTKB|E2RH85	726	PIK3R2 "Uncharacterized protei	0.254	0.183	0.609	3.1e-77
UNIPROTKB|F1S916	725	PIK3R2 "Uncharacterized protei	0.250	0.180	0.609	5.5e-77
UNIPROTKB|Q8UUU2	722	pik3r1-a "Phosphatidylinositol	0.531	0.385	0.410	6.6e-77
UNIPROTKB|I3LLB7	608	I3LLB7 "Uncharacterized protei	0.527	0.453	0.411	7.5e-76
RGD|68341	722	Pik3r2 "phosphoinositide-3-kin	0.252	0.182	0.617	1e-75
UNIPROTKB|Q63788	722	Pik3r2 "Phosphatidylinositol 3	0.252	0.182	0.617	1e-75
MGI|MGI:1098772	722	Pik3r2 "phosphatidylinositol 3	0.256	0.185	0.605	1.4e-75
UNIPROTKB|E1C8M4	724	PIK3R1 "Uncharacterized protei	0.529	0.382	0.402	1.4e-75

UNIPROTKB|O00459 PIK3R2 "Phosphatidylinositol 3-kinase regulatory subunit beta" [Homo sapiens (taxid:9606)]

 Score = 468 (169.8 bits), Expect = 5.8e-79, Sum P(3) = 5.8e-79
 Identities = 90/146 (61%), Positives = 112/146 (76%)

Query:   173 SPPALPPRKLSPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLA 232
             +PPALPP+    +P++T             +++G    SL+DAEWYWGDISR++VN+KL 
Sbjct:   298 APPALPPKPPKAKPASTV------------LANGGSPPSLQDAEWYWGDISREEVNEKLR 345

Query:   233 DTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYY 291
             DT DGTFLVRD S+K  GEYTLTLRKGG NKLIK+FHR+G YGFSEP  F SVV+LIN+Y
Sbjct:   346 DTPDGTFLVRDASSKIQGEYTLTLRKGGNNKLIKVFHRDGHYGFSEPLTFCSVVDLINHY 405

Query:   292 KHESLSQYNSTLDTRLLYPVSRFSSD 317
             +HESL+QYN+ LDTRLLYPVS++  D
Sbjct:   406 RHESLAQYNAKLDTRLLYPVSKYQQD 431

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

GO:0035014 "phosphatidylinositol 3-kinase regulator activity" evidence=IEA

GO:0016303 "1-phosphatidylinositol-3-kinase activity" evidence=ISS

GO:0030971 "receptor tyrosine kinase binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0031295 "T cell costimulation" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=TAS

GO:0050852 "T cell receptor signaling pathway" evidence=TAS

GO:0050900 "leukocyte migration" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0036092 "phosphatidylinositol-3-phosphate biosynthetic process" evidence=ISS

UNIPROTKB|P23726 PIK3R2 "Phosphatidylinositol 3-kinase regulatory subunit beta" [Bos taurus (taxid:9913)]

 Score = 459 (166.6 bits), Expect = 5.1e-78, Sum P(3) = 5.1e-78
 Identities = 89/146 (60%), Positives = 110/146 (75%)

Query:   173 SPPALPPRKLSPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLA 232
             +PPALPP+    +P+ T             +++G    SL+DAEWYWGDISR++VN+KL 
Sbjct:   294 APPALPPKPPKTKPAPT------------GLANGGSPPSLQDAEWYWGDISREEVNEKLR 341

Query:   233 DTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYY 291
             DT DGTFLVRD S+K  GEYTLTLRKGG NKLIK+FHR+G YGFSEP  F SVV+LI +Y
Sbjct:   342 DTPDGTFLVRDASSKIQGEYTLTLRKGGNNKLIKVFHRDGHYGFSEPLTFCSVVDLITHY 401

Query:   292 KHESLSQYNSTLDTRLLYPVSRFSSD 317
             +HESL+QYN+ LDTRLLYPVS++  D
Sbjct:   402 RHESLAQYNAKLDTRLLYPVSKYQQD 427

GO:0005515 "protein binding" evidence=IPI

GO:0016303 "1-phosphatidylinositol-3-kinase activity" evidence=ISS

GO:0035014 "phosphatidylinositol 3-kinase regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

UNIPROTKB|E2RH85 PIK3R2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 458 (166.3 bits), Expect = 3.1e-77, Sum P(3) = 3.1e-77
 Identities = 89/146 (60%), Positives = 110/146 (75%)

Query:   173 SPPALPPRKLSPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLA 232
             +PPALPP+    +P+             A +++G    SL+DAEWYWGDISR++VN+KL 
Sbjct:   296 TPPALPPKPPKAKPAP------------AGLANGGSPPSLQDAEWYWGDISREEVNEKLR 343

Query:   233 DTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYY 291
             DT DGTFLVRD S+K  GEYTLTLRKGG NKLIK+FHR+G YGFSEP  F SVV+LI +Y
Sbjct:   344 DTPDGTFLVRDASSKIQGEYTLTLRKGGNNKLIKVFHRDGHYGFSEPLTFCSVVDLITHY 403

Query:   292 KHESLSQYNSTLDTRLLYPVSRFSSD 317
             +HESL+QYN+ LDTRLLYPVS++  D
Sbjct:   404 RHESLAQYNAKLDTRLLYPVSKYQQD 429

GO:0016303 "1-phosphatidylinositol-3-kinase activity" evidence=IEA

GO:0035014 "phosphatidylinositol 3-kinase regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

UNIPROTKB|F1S916 PIK3R2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 455 (165.2 bits), Expect = 5.5e-77, Sum P(3) = 5.5e-77
 Identities = 89/146 (60%), Positives = 109/146 (74%)

Query:   173 SPPALPPRKLSPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLA 232
             +PPALPP+    +P+ T              ++G    SL+DAEWYWGDISR++VN+KL 
Sbjct:   297 APPALPPKPPKAKPAPT--------------ANGGSPPSLQDAEWYWGDISREEVNEKLR 342

Query:   233 DTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYY 291
             DT DGTFLVRD S+K  GEYTLTLRKGG NKLIK+FHR+G YGFSEP  F SVV+LI +Y
Sbjct:   343 DTPDGTFLVRDASSKIQGEYTLTLRKGGNNKLIKVFHRDGHYGFSEPLTFCSVVDLITHY 402

Query:   292 KHESLSQYNSTLDTRLLYPVSRFSSD 317
             +HESL+QYN+ LDTRLLYPVS++  D
Sbjct:   403 RHESLAQYNAKLDTRLLYPVSKYQQD 428

GO:0016303 "1-phosphatidylinositol-3-kinase activity" evidence=IEA

GO:0035014 "phosphatidylinositol 3-kinase regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

UNIPROTKB|Q8UUU2 pik3r1-a "Phosphatidylinositol 3-kinase regulatory subunit alpha" [Xenopus laevis (taxid:8355)]

 Score = 518 (187.4 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
 Identities = 120/292 (41%), Positives = 170/292 (58%)

Query:    40 GLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVY 99
             GL +A L+   ++S + EL      +  S +F + + A+L+  LK Y   L  P+IP + 
Sbjct:   142 GLESATLYRSQSSSSLTELRQILECDAASVDFEQFDIAILSDALKRYFLDLPHPVIPALM 201

Query:   100 YEKFVSLL--SGSNDRHIGS-RLFALVQDFPAHHFSALRYLMAHLARMCA-----LQYAR 151
             Y + +S    S S+D ++   R      + P  ++  L+YL+ H  ++C      L  A+
Sbjct:   202 YSEMLSAARESISSDEYVQLLRKIIRCANVPQQYWLTLQYLLKHFFQLCQSSSKNLLSAK 261

Query:   152 GVRE---PPTILIQSFTFVLPTFSSP--PALPPRKLSPRPSATYVHSRQSSLDVAKMSSG 206
              + E   P    IQ  +     FS+     L   + + + +A  +  + S       +  
Sbjct:   262 SLAEIFSPLLFRIQVSSSDSSEFSTQILEVLIASEWNEKQAAPALPPKPSKSTAVTNNGT 321

Query:   207 PETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTST-KNGEYTLTLRKGGTNKLIK 265
                 SL+DAEWYWGDISR++VN+KL DT DGTFLVRD ST  +G+YTLTLRKGG NKLIK
Sbjct:   322 NHVMSLQDAEWYWGDISREEVNEKLRDTTDGTFLVRDASTIMHGDYTLTLRKGGNNKLIK 381

Query:   266 IFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
             IFHR+G+YGFS+P  F SVVELI +Y++ESL+QYN  LD +LLYPVSRF  D
Sbjct:   382 IFHRDGKYGFSDPLTFNSVVELITHYRNESLAQYNPKLDVKLLYPVSRFQQD 433

GO:0005158 "insulin receptor binding" evidence=ISS

GO:0005159 "insulin-like growth factor receptor binding" evidence=ISS

GO:0005943 "1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex" evidence=ISS

GO:0008286 "insulin receptor signaling pathway" evidence=ISS

GO:0035014 "phosphatidylinositol 3-kinase regulator activity" evidence=ISS

GO:0043125 "ErbB-3 class receptor binding" evidence=ISS

GO:0043551 "regulation of phosphatidylinositol 3-kinase activity" evidence=ISS

GO:0043560 "insulin receptor substrate binding" evidence=ISS

GO:0046854 "phosphatidylinositol phosphorylation" evidence=ISS

GO:0048009 "insulin-like growth factor receptor signaling pathway" evidence=ISS

UNIPROTKB|I3LLB7 I3LLB7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 504 (182.5 bits), Expect = 7.5e-76, Sum P(2) = 7.5e-76
 Identities = 121/294 (41%), Positives = 169/294 (57%)

Query:    40 GLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVY 99
             GL    L+   ++S  AEL      +  S +   ++  +LA   K YL  L  P+IP   
Sbjct:    27 GLECPTLYRTQSSSSTAELRQLLDCDATSVDLEMIDVHVLADAFKRYLLDLPNPVIPVAV 86

Query:   100 YEKFVSLLSG--SNDRHIGSRLFALVQ--DFPAHHFSALRYLMAHLARMCALQYARGVRE 155
             Y + +SL     S++ +I   L  L++  + P  ++  L+YL+ H  ++     ++ +  
Sbjct:    87 YSEMISLAPEVQSSEEYI-QLLKKLIRSPNIPHQYWLTLQYLLKHFFKLSQTS-SKNLLS 144

Query:   156 PPTI--LIQSFTFVLPTFSSPPALPPRKLSPRPSATYVHSRQSSLDVAKMSSGPET--N- 210
                +  L     F  P  SS       K+     +T  + RQ +  +      P T  N 
Sbjct:   145 ARVLSELFSPLLFRFPAASSENTEHLIKVIEILISTEWNERQPAPALPPKPPKPTTVANN 204

Query:   211 ------SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKL 263
                   SL+DAEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NKL
Sbjct:   205 GMNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKL 264

Query:   264 IKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
             IKIFHR+G+YGFS+P  F SVVELIN+Y++ESL+QYN  LD +LLYPVS++  D
Sbjct:   265 IKIFHRDGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 318

GO:0035014 "phosphatidylinositol 3-kinase regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

RGD|68341 Pik3r2 "phosphoinositide-3-kinase, regulatory subunit 2 (beta)" [Rattus norvegicus (taxid:10116)]

 Score = 469 (170.2 bits), Expect = 1.0e-75, Sum P(3) = 1.0e-75
 Identities = 92/149 (61%), Positives = 115/149 (77%)

Query:   172 SSPPALPPR--KLSPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVND 229
             ++PPALPP+  K+ P P+A              +++G  T SL+DAEWYWGDISR++VN+
Sbjct:   291 TAPPALPPKPSKVKPAPTA--------------LANGGSTPSLQDAEWYWGDISREEVNE 336

Query:   230 KLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELI 288
             +L DT DGTFLVRD S+K  GEYTLTLRKGG NKLIK+FHR+G YGFSEP  F SVVELI
Sbjct:   337 RLRDTPDGTFLVRDASSKIQGEYTLTLRKGGNNKLIKVFHRDGHYGFSEPLTFCSVVELI 396

Query:   289 NYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
             ++Y+HESL+QYN+ LDTRLLYPVS++  D
Sbjct:   397 SHYRHESLAQYNAKLDTRLLYPVSKYQQD 425

GO:0005829 "cytosol" evidence=TAS

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016303 "1-phosphatidylinositol-3-kinase activity" evidence=IEA;ISO;ISS

GO:0030971 "receptor tyrosine kinase binding" evidence=ISO

GO:0035014 "phosphatidylinositol 3-kinase regulator activity" evidence=IEA

GO:0036092 "phosphatidylinositol-3-phosphate biosynthetic process" evidence=ISS

UNIPROTKB|Q63788 Pik3r2 "Phosphatidylinositol 3-kinase regulatory subunit beta" [Rattus norvegicus (taxid:10116)]

 Score = 469 (170.2 bits), Expect = 1.0e-75, Sum P(3) = 1.0e-75
 Identities = 92/149 (61%), Positives = 115/149 (77%)

Query:   172 SSPPALPPR--KLSPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVND 229
             ++PPALPP+  K+ P P+A              +++G  T SL+DAEWYWGDISR++VN+
Sbjct:   291 TAPPALPPKPSKVKPAPTA--------------LANGGSTPSLQDAEWYWGDISREEVNE 336

Query:   230 KLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELI 288
             +L DT DGTFLVRD S+K  GEYTLTLRKGG NKLIK+FHR+G YGFSEP  F SVVELI
Sbjct:   337 RLRDTPDGTFLVRDASSKIQGEYTLTLRKGGNNKLIKVFHRDGHYGFSEPLTFCSVVELI 396

Query:   289 NYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
             ++Y+HESL+QYN+ LDTRLLYPVS++  D
Sbjct:   397 SHYRHESLAQYNAKLDTRLLYPVSKYQQD 425

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0035014 "phosphatidylinositol 3-kinase regulator activity" evidence=IEA

MGI|MGI:1098772 Pik3r2 "phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)" [Mus musculus (taxid:10090)]

 Score = 463 (168.0 bits), Expect = 1.4e-75, Sum P(3) = 1.4e-75
 Identities = 89/147 (60%), Positives = 112/147 (76%)

Query:   172 SSPPALPPRKLSPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKL 231
             ++PPALPP+    +P+ T             +++G    SL+DAEWYWGDISR++VN++L
Sbjct:   291 AAPPALPPKPSKAKPAPT------------ALANGGSPPSLQDAEWYWGDISREEVNERL 338

Query:   232 ADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINY 290
              DT DGTFLVRD S+K  GEYTLTLRKGG NKLIK+FHR+G YGFSEP  F SVVELI++
Sbjct:   339 RDTPDGTFLVRDASSKIQGEYTLTLRKGGNNKLIKVFHRDGHYGFSEPLTFCSVVELISH 398

Query:   291 YKHESLSQYNSTLDTRLLYPVSRFSSD 317
             Y+HESL+QYN+ LDTRLLYPVS++  D
Sbjct:   399 YRHESLAQYNAKLDTRLLYPVSKYQQD 425

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=NAS

GO:0007165 "signal transduction" evidence=IEA

GO:0008286 "insulin receptor signaling pathway" evidence=NAS

GO:0016303 "1-phosphatidylinositol-3-kinase activity" evidence=IMP

GO:0030971 "receptor tyrosine kinase binding" evidence=ISO

GO:0035014 "phosphatidylinositol 3-kinase regulator activity" evidence=IEA

GO:0042325 "regulation of phosphorylation" evidence=NAS

UNIPROTKB|E1C8M4 PIK3R1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 500 (181.1 bits), Expect = 1.4e-75, Sum P(2) = 1.4e-75
 Identities = 118/293 (40%), Positives = 165/293 (56%)

Query:    40 GLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVY 99
             GL  + L+   ++S  AEL      +  S +    +   L+  LK YL  L  P+IP   
Sbjct:   143 GLECSTLYVTQSSSSSAELRQILECDASSLDLETFDVHTLSDALKRYLLDLPNPIIPATV 202

Query:   100 YEKFVSLLSG-SNDRHIGSRLFALVQ--DFPAHHFSALRYLMAHLARMCA-----LQYAR 151
             Y   +S+     +       L  L++  + P  ++  L+YL+ H  R+C      L  AR
Sbjct:   203 YSDIISVAQDVQSSEEYAQLLKKLIRSPNIPHQYWLTLQYLLKHFLRLCQASSKNLLNAR 262

Query:   152 GVREPPTILIQSFTFVLPTFSSP-----PALPPRKLSPRPSATYVHSRQSSLDVAKMSSG 206
              + E  + L+  F       +         L   + + R     +  +    +    ++G
Sbjct:   263 SLAEIFSPLLFKFQIASSDNAEHHIRILEILITSEWNERQPVPALPPKPPKPNTVT-NNG 321

Query:   207 PETN-SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLI 264
                N SL+DAEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NKLI
Sbjct:   322 MNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLI 381

Query:   265 KIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
             KIFHR+G+YGFS+P  F SVVELIN+Y++ESL+QYN  LD +LLYPVS++  D
Sbjct:   382 KIFHRDGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 434

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

GO:0035014 "phosphatidylinositol 3-kinase regulator activity" evidence=IEA

GO:0001953 "negative regulation of cell-matrix adhesion" evidence=IEA

GO:0005158 "insulin receptor binding" evidence=IEA

GO:0005159 "insulin-like growth factor receptor binding" evidence=IEA

GO:0005168 "neurotrophin TRKA receptor binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0030183 "B cell differentiation" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043125 "ErbB-3 class receptor binding" evidence=IEA

GO:0043559 "insulin binding" evidence=IEA

GO:0043560 "insulin receptor substrate binding" evidence=IEA

GO:0045671 "negative regulation of osteoclast differentiation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0051531 "NFAT protein import into nucleus" evidence=IEA

GO:0060396 "growth hormone receptor signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	523
cd09942	110	cd09942, SH2_nSH2_p85_like, N-terminal Src homolog	6e-65
cd09930	104	cd09930, SH2_cSH2_p85_like, C-terminal Src homolog	6e-49
smart00252	84	smart00252, SH2, Src homology 2 domains	8e-24
cd09940	102	cd09940, SH2_Vav_family, Src homology 2 (SH2) doma	2e-21
cd09923	81	cd09923, SH2_SOCS_family, Src homology 2 (SH2) dom	6e-18
cd09942	110	cd09942, SH2_nSH2_p85_like, N-terminal Src homolog	8e-18
cd09930	104	cd09930, SH2_cSH2_p85_like, C-terminal Src homolog	1e-17
pfam00017	77	pfam00017, SH2, SH2 domain	2e-17
smart00252	84	smart00252, SH2, Src homology 2 domains	1e-16
cd10407	103	cd10407, SH2_Vav3, Src homology 2 (SH2) domain fou	2e-16
cd00173	79	cd00173, SH2, Src homology 2 (SH2) domain	3e-16
cd00173	79	cd00173, SH2, Src homology 2 (SH2) domain	5e-16
cd09940	102	cd09940, SH2_Vav_family, Src homology 2 (SH2) doma	8e-15
pfam00620	152	pfam00620, RhoGAP, RhoGAP domain	9e-15
smart00324	174	smart00324, RhoGAP, GTPase-activator protein for R	2e-14
pfam00017	77	pfam00017, SH2, SH2 domain	5e-14
cd10387	100	cd10387, SH2_SOCS6, Src homology 2 (SH2) domain fo	8e-14
cd00159	169	cd00159, RhoGAP, RhoGAP: GTPase-activator protein	9e-14
cd09934	104	cd09934, SH2_Tec_family, Src homology 2 (SH2) doma	3e-13
cd09942	110	cd09942, SH2_nSH2_p85_like, N-terminal Src homolog	6e-13
cd10388	101	cd10388, SH2_SOCS7, Src homology 2 (SH2) domain fo	7e-12
cd10397	106	cd10397, SH2_Tec_Btk, Src homology 2 (SH2) domain	1e-11
cd10405	103	cd10405, SH2_Vav1, Src homology 2 (SH2) domain fou	2e-11
cd09929	121	cd09929, SH2_BLNK_SLP-76, Src homology 2 (SH2) dom	3e-11
cd10383	103	cd10383, SH2_SOCS2, Src homology 2 (SH2) domain fo	3e-11
cd09933	101	cd09933, SH2_Src_family, Src homology 2 (SH2) doma	2e-10
cd10361	90	cd10361, SH2_Fps_family, Src homology 2 (SH2) doma	2e-10
cd10406	103	cd10406, SH2_Vav2, Src homology 2 (SH2) domain fou	3e-10
cd04378	203	cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: Rho	2e-09
cd10396	108	cd10396, SH2_Tec_Itk, Src homology 2 (SH2) domain	2e-09
cd09937	98	cd09937, SH2_csk_like, Src homology 2 (SH2) domain	2e-09
cd04398	192	cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas	7e-09
cd09943	93	cd09943, SH2_Nck_family, Src homology 2 (SH2) doma	1e-08
cd09941	95	cd09941, SH2_Grb2_like, Src homology 2 domain foun	1e-08
cd10341	99	cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src	2e-08
cd10358	100	cd10358, SH2_PTK6_Brk, Src homology 2 domain found	2e-08
cd10341	99	cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src	4e-08
cd10370	96	cd10370, SH2_Src_Src42, Src homology 2 (SH2) domai	4e-08
cd09932	104	cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src	4e-08
cd10409	98	cd10409, SH2_Nck2, Src homology 2 (SH2) domain fou	5e-08
cd10352	91	cd10352, SH2_a2chimerin_b2chimerin, Src homology 2	6e-08
cd09925	104	cd09925, SH2_SHC, Src homology 2 (SH2) domain foun	6e-08
cd10405	103	cd10405, SH2_Vav1, Src homology 2 (SH2) domain fou	7e-08
cd09923	81	cd09923, SH2_SOCS_family, Src homology 2 (SH2) dom	8e-08
cd09938	104	cd09938, SH2_N-SH2_Zap70_Syk_like, N-terminal Src	9e-08
cd09926	106	cd09926, SH2_CRK_like, Src homology 2 domain found	1e-07
cd10355	92	cd10355, SH2_DAPP1_BAM32_like, Src homology 2 doma	1e-07
cd04409	211	cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas	1e-07
cd09935	94	cd09935, SH2_ABL, Src homology 2 (SH2) domain foun	1e-07
cd10398	106	cd10398, SH2_Tec_Txk, Src homology 2 (SH2) domain	2e-07
cd04384	195	cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas	2e-07
cd10367	101	cd10367, SH2_Src_Fgr, Src homology 2 (SH2) domain	2e-07
cd09931	99	cd09931, SH2_C-SH2_SHP_like, C-terminal Src homolo	2e-07
cd09925	104	cd09925, SH2_SHC, Src homology 2 (SH2) domain foun	3e-07
cd09935	94	cd09935, SH2_ABL, Src homology 2 (SH2) domain foun	3e-07
cd10718	88	cd10718, SH2_CIS, Src homology 2 (SH2) domain foun	3e-07
cd10406	103	cd10406, SH2_Vav2, Src homology 2 (SH2) domain fou	4e-07
cd10407	103	cd10407, SH2_Vav3, Src homology 2 (SH2) domain fou	6e-07
cd04390	199	cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24	6e-07
cd09940	102	cd09940, SH2_Vav_family, Src homology 2 (SH2) doma	7e-07
cd09933	101	cd09933, SH2_Src_family, Src homology 2 (SH2) doma	7e-07
cd10418	101	cd10418, SH2_Src_Fyn_isoform_a_like, Src homology	7e-07
cd10363	104	cd10363, SH2_Src_HCK, Src homology 2 (SH2) domain	7e-07
cd04404	195	cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA	1e-06
cd10402	105	cd10402, SH2_C-SH2_Zap70, C-terminal Src homology	1e-06
cd10369	96	cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain	1e-06
cd10343	103	cd10343, SH2_SHIP, Src homology 2 (SH2) domain fou	1e-06
cd10408	97	cd10408, SH2_Nck1, Src homology 2 (SH2) domain fou	1e-06
cd10347	81	cd10347, SH2_Nterm_shark_like, N-terminal Src homo	2e-06
cd10368	101	cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain	2e-06
cd10364	101	cd10364, SH2_Src_Lyn, Src homology 2 (SH2) domain	2e-06
cd10365	101	cd10365, SH2_Src_Src, Src homology 2 (SH2) domain	2e-06
cd10382	98	cd10382, SH2_SOCS1, Src homology 2 (SH2) domain fo	2e-06
cd10352	91	cd10352, SH2_a2chimerin_b2chimerin, Src homology 2	3e-06
cd04408	200	cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-	3e-06
cd10366	101	cd10366, SH2_Src_Yes, Src homology 2 (SH2) domain	3e-06
cd09937	98	cd09937, SH2_csk_like, Src homology 2 (SH2) domain	4e-06
cd04386	203	cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP	4e-06
cd10419	101	cd10419, SH2_Src_Fyn_isoform_b_like, Src homology	4e-06
cd10340	99	cd10340, SH2_N-SH2_SHP_like, N-terminal Src homolo	4e-06
cd04374	203	cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activato	5e-06
cd09944	108	cd09944, SH2_Grb7_family, Src homology 2 (SH2) dom	6e-06
cd10391	98	cd10391, SH2_SHE, Src homology 2 domain found in S	6e-06
cd04406	186	cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho	9e-06
cd10356	113	cd10356, SH2_ShkA_ShkC, Src homology 2 (SH2) domai	1e-05
cd09945	98	cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2	1e-05
cd04372	194	cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGA	1e-05
cd04393	189	cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP	1e-05
cd04395	196	cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP	2e-05
cd04388	200	cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-ac	2e-05
cd04373	185	cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-	2e-05
cd04377	186	cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA	2e-05
cd10347	81	cd10347, SH2_Nterm_shark_like, N-terminal Src homo	3e-05
cd10344	104	cd10344, SH2_SLAP, Src homology 2 domain found in	3e-05
cd10354	77	cd10354, SH2_Cterm_RasGAP, C-terminal Src homology	3e-05
cd10399	106	cd10399, SH2_Tec_Bmx, Src homology 2 (SH2) domain	3e-05
cd10357	87	cd10357, SH2_ShkD_ShkE, Src homology 2 (SH2) domai	4e-05
cd09930	104	cd09930, SH2_cSH2_p85_like, C-terminal Src homolog	5e-05
cd09932	104	cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src	6e-05
cd10389	97	cd10389, SH2_SHB, Src homology 2 domain found in S	7e-05
cd10386	81	cd10386, SH2_SOCS5, Src homology 2 (SH2) domain fo	7e-05
cd10348	86	cd10348, SH2_Cterm_shark_like, C-terminal Src homo	8e-05
cd10384	101	cd10384, SH2_SOCS3, Src homology 2 (SH2) domain fo	9e-05
cd09945	98	cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2	1e-04
cd09927	116	cd09927, SH2_Tensin_like, Src homology 2 domain fo	1e-04
cd04403	187	cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_	1e-04
cd10407	103	cd10407, SH2_Vav3, Src homology 2 (SH2) domain fou	2e-04
cd09931	99	cd09931, SH2_C-SH2_SHP_like, C-terminal Src homolo	2e-04
cd10369	96	cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain	2e-04
cd10344	104	cd10344, SH2_SLAP, Src homology 2 domain found in	2e-04
cd10351	103	cd10351, SH2_SH2D4B, Src homology 2 domain found i	2e-04
cd10362	101	cd10362, SH2_Src_Lck, Src homology 2 (SH2) domain	2e-04
cd10391	98	cd10391, SH2_SHE, Src homology 2 domain found in S	3e-04
cd09927	116	cd09927, SH2_Tensin_like, Src homology 2 domain fo	3e-04
cd04381	182	cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP	3e-04
cd04383	188	cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas	3e-04
cd04394	202	cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA	3e-04
cd10337	136	cd10337, SH2_BCAR3, Src homology 2 (SH2) domain in	4e-04
cd10357	87	cd10357, SH2_ShkD_ShkE, Src homology 2 (SH2) domai	5e-04
cd04382	193	cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGA	7e-04
cd10392	98	cd10392, SH2_SHF, Src homology 2 domain found in S	7e-04
cd09943	93	cd09943, SH2_Nck_family, Src homology 2 (SH2) doma	0.001
cd10417	102	cd10417, SH2_SH2D7, Src homology 2 domain found in	0.001
cd04389	187	cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-	0.001
cd10360	79	cd10360, SH2_Srm, Src homology 2 (SH2) domain foun	0.001
cd09934	104	cd09934, SH2_Tec_family, Src homology 2 (SH2) doma	0.002
cd10361	90	cd10361, SH2_Fps_family, Src homology 2 (SH2) doma	0.002
cd09941	95	cd09941, SH2_Grb2_like, Src homology 2 domain foun	0.002
cd10388	101	cd10388, SH2_SOCS7, Src homology 2 (SH2) domain fo	0.003
cd10415	108	cd10415, SH2_Grb10, Src homology 2 (SH2) domain fo	0.003
cd10345	95	cd10345, SH2_C-SH2_Zap70_Syk_like, C-terminal Src	0.004

>gnl|CDD|198195 cd09942, SH2_nSH2_p85_like, N-terminal Src homology 2 (nSH2) domain found in p85

 Score =  206 bits (525), Expect = 6e-65
 Identities = 77/109 (70%), Positives = 93/109 (85%)

Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
            +SL++AEWYWGDISR++VN+K+ DT DGTFLVRD ST  G+YTLTLRKGG NKLIKIFH
Sbjct: 1   PHSLQEAEWYWGDISREEVNEKMRDTPDGTFLVRDASTMKGDYTLTLRKGGNNKLIKIFH 60

Query: 269 RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
           R+G+YGFS+P  F SVVELINYY++ SL++YN  LD +LLYPVSRF  D
Sbjct: 61  RDGKYGFSDPLTFNSVVELINYYRNNSLAEYNRKLDVKLLYPVSRFQQD 109

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, an internal SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and (2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, (2) p85 iSH2 domain with C2 domain of p110alpha, and (3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 110

>gnl|CDD|198184 cd09930, SH2_cSH2_p85_like, C-terminal Src homology 2 (cSH2) domain found in p85

 Score =  163 bits (415), Expect = 6e-49
 Identities = 66/100 (66%), Positives = 80/100 (80%), Gaps = 2/100 (2%)

Query: 418 EKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFG 475
           E+TWLV  ++R QAE LL G+PDGTFLIR S+T G YA S+VC+G  KHC++Y+TE G+G
Sbjct: 5   ERTWLVGDINRTQAEELLRGKPDGTFLIRESSTQGCYACSVVCNGEVKHCVIYKTETGYG 64

Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 515
           FAEP+N+Y SL  LVLHYA NSLE+HND L  TLAYPV A
Sbjct: 65  FAEPYNLYESLKELVLHYAHNSLEQHNDSLTVTLAYPVLA 104

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, a inter SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and 2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, 2) p85 iSH2 domain with C2 domain of p110alpha, and 3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|214585 smart00252, SH2, Src homology 2 domains

 Score = 94.6 bits (236), Expect = 8e-24
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 216 EWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYG 274
            WY G ISR++    L +  DG FLVRD+ +  G+Y L++R  G  K  +I    +G++ 
Sbjct: 2   PWYHGFISREEAEKLLKNEGDGDFLVRDSESSPGDYVLSVRVKGKVKHYRIRRNEDGKFY 61

Query: 275 FSEPFKFTSVVELINYYKHESLS 297
                KF S+VEL+ +Y+  SL 
Sbjct: 62  LEGGRKFPSLVELVEHYQKNSLG 84

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae. Length = 84

>gnl|CDD|198193 cd09940, SH2_Vav_family, Src homology 2 (SH2) domain found in the Vav family

 Score = 88.9 bits (221), Expect = 2e-21
 Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 1/97 (1%)

Query: 216 EWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NGRYG 274
            W+ G++ RD   ++L +  DGT+LVR       +Y L+++  G  K +KI  R +G Y 
Sbjct: 6   LWFVGEMERDTAENRLENRPDGTYLVRVRPQGETQYALSIKYNGDVKHMKIEQRSDGLYY 65

Query: 275 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
            SE   F S+VEL+NYY+  SL +  + LDT L +P 
Sbjct: 66  LSESRHFKSLVELVNYYERNSLGENFAGLDTTLKWPY 102

Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, Vav2 and Vav3 are more ubiquitously expressed. The members here include insect and amphibian Vavs. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|198178 cd09923, SH2_SOCS_family, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) family

 Score = 78.0 bits (193), Expect = 6e-18
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 216 EWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
            WYWG I+R +  + LA   +GTFLVRD+S     ++++ R  G     +I + NGR+ F
Sbjct: 1   GWYWGGITRYEAEELLAGKPEGTFLVRDSSDSRYLFSVSFRTYGRTLHARIEYSNGRFSF 60

Query: 276 SE----PFKFTSVVELINYYK 292
                   +F  VVELI +Y 
Sbjct: 61  DSSDPSVPRFPCVVELIEHYV 81

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|198195 cd09942, SH2_nSH2_p85_like, N-terminal Src homology 2 (nSH2) domain found in p85

 Score = 78.9 bits (195), Expect = 8e-18
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 381
           FS+P  F SVVELINYY++ SL++YN  LD +LLYPVSRF  D
Sbjct: 67  FSDPLTFNSVVELINYYRNNSLAEYNRKLDVKLLYPVSRFQQD 109

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, an internal SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and (2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, (2) p85 iSH2 domain with C2 domain of p110alpha, and (3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 110

>gnl|CDD|198184 cd09930, SH2_cSH2_p85_like, C-terminal Src homology 2 (cSH2) domain found in p85

 Score = 77.8 bits (192), Expect = 1e-17
 Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 2/101 (1%)

Query: 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG 271
             +  W  GDI+R    + L    DGTFL+R++ST+ G Y  ++   G  K   I+    
Sbjct: 3   HDERTWLVGDINRTQAEELLRGKPDGTFLIRESSTQ-GCYACSVVCNGEVKHCVIYKTET 61

Query: 272 RYGFSEPFK-FTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
            YGF+EP+  + S+ EL+ +Y H SL Q+N +L   L YPV
Sbjct: 62  GYGFAEPYNLYESLKELVLHYAHNSLEQHNDSLTVTLAYPV 102

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, a inter SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and 2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, 2) p85 iSH2 domain with C2 domain of p110alpha, and 3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|215658 pfam00017, SH2, SH2 domain

 Score = 76.5 bits (189), Expect = 2e-17
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 217 WYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI-FHRNGRYG 274
           WY G ISR++    L     DGTFLVR++ +K G+YTL++R  G  K  +I    NG Y 
Sbjct: 1   WYHGKISREEAERLLLNPKPDGTFLVRESESKPGDYTLSVRDDGRVKHYRIQSLDNGGYY 60

Query: 275 FSEPFKFTSVVELINYY 291
            S    F S+ EL+ +Y
Sbjct: 61  ISGGVTFNSLPELVEHY 77

Length = 77

>gnl|CDD|214585 smart00252, SH2, Src homology 2 domains

 Score = 74.2 bits (183), Expect = 1e-16
 Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
            +SR +AE LL    DG FL+R S +  G Y LS+   G  KH  +   E G  + E   
Sbjct: 7   FISREEAEKLLKNEGDGDFLVRDSESSPGDYVLSVRVKGKVKHYRIRRNEDGKFYLEGGR 66

Query: 482 IYPSLGALVLHYAANSL 498
            +PSL  LV HY  NSL
Sbjct: 67  KFPSLVELVEHYQKNSL 83

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae. Length = 84

>gnl|CDD|198270 cd10407, SH2_Vav3, Src homology 2 (SH2) domain found in the Vav3 proteins

 Score = 74.3 bits (182), Expect = 2e-16
 Identities = 35/94 (37%), Positives = 56/94 (59%)

Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
           WY G + R     +L +  + T+LVR  + ++GEY ++++     K IKI  R+G +  +
Sbjct: 7   WYAGAMERLQAETELINRVNSTYLVRHRTKESGEYAISIKYNNEVKHIKILTRDGFFHIA 66

Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
           E  KF S++EL+ YYKH SL +   +LDT L +P
Sbjct: 67  ENRKFKSLMELVEYYKHHSLKEGFRSLDTTLQFP 100

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav3 preferentially activates RhoA, RhoG and, to a lesser extent, Rac1. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. VAV3 has been shown to interact with Grb2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198173 cd00173, SH2, Src homology 2 (SH2) domain

 Score = 73.3 bits (180), Expect = 3e-16
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 216 EWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLR-KGGTNKLIKIFHRNGRYG 274
            W+ G ISR++    L    DGTFLVR++S++ G+Y L++R   G  K   I    G Y 
Sbjct: 1   PWFHGSISREEAERLLRGKPDGTFLVRESSSEPGDYVLSVRSGDGKVKHYLIERNEGGYY 60

Query: 275 F--SEPFKFTSVVELINYY 291
                   F S+ EL+ +Y
Sbjct: 61  LLGGSGRTFPSLPELVEHY 79

In general, SH2 domains are involved in signal transduction; they bind pTyr-containing polypeptide ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. They are present in a wide array of proteins including: adaptor proteins (Nck1, Crk, Grb2), scaffolds (Slp76, Shc, Dapp1), kinases (Src, Syk, Fps, Tec), phosphatases (Shp-1, Shp-2), transcription factors (STAT1), Ras signaling molecules (Ras-Gap), ubiquitination factors (c-Cbl), cytoskeleton regulators (Tensin), signal regulators (SAP), and phospholipid second messengers (PLCgamma), amongst others. Length = 79

>gnl|CDD|198173 cd00173, SH2, Src homology 2 (SH2) domain

 Score = 72.5 bits (178), Expect = 5e-16
 Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 4/74 (5%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVC-SGAPKHCLVYETERGFGFA-EP 479
            +SR +AE LL G+PDGTFL+R S++  G Y LS+    G  KH L+   E G+      
Sbjct: 6   SISREEAERLLRGKPDGTFLVRESSSEPGDYVLSVRSGDGKVKHYLIERNEGGYYLLGGS 65

Query: 480 FNIYPSLGALVLHY 493
              +PSL  LV HY
Sbjct: 66  GRTFPSLPELVEHY 79

In general, SH2 domains are involved in signal transduction; they bind pTyr-containing polypeptide ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. They are present in a wide array of proteins including: adaptor proteins (Nck1, Crk, Grb2), scaffolds (Slp76, Shc, Dapp1), kinases (Src, Syk, Fps, Tec), phosphatases (Shp-1, Shp-2), transcription factors (STAT1), Ras signaling molecules (Ras-Gap), ubiquitination factors (c-Cbl), cytoskeleton regulators (Tensin), signal regulators (SAP), and phospholipid second messengers (PLCgamma), amongst others. Length = 79

>gnl|CDD|198193 cd09940, SH2_Vav_family, Src homology 2 (SH2) domain found in the Vav family

 Score = 70.0 bits (172), Expect = 8e-15
 Identities = 40/99 (40%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 418 EKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTTG--QYALSIVCSGAPKHCLVYETERGF 474
           E  W V  M R  AE  L  RPDGT+L+R    G  QYALSI  +G  KH  + +   G 
Sbjct: 4   EFLWFVGEMERDTAENRLENRPDGTYLVRVRPQGETQYALSIKYNGDVKHMKIEQRSDGL 63

Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            +      + SL  LV +Y  NSL E+   L TTL +P 
Sbjct: 64  YYLSESRHFKSLVELVNYYERNSLGENFAGLDTTLKWPY 102

Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, Vav2 and Vav3 are more ubiquitously expressed. The members here include insect and amphibian Vavs. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain

 Score = 71.4 bits (176), Expect = 9e-15
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 49  PGNASQVAELFHAY-SGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLL 107
            G+AS++ EL  A+ SGE    +  + +  ++A +LK +L+ L EPL+ +  YE+F+   
Sbjct: 25  SGSASRIKELREAFDSGEDVDLDLEEEDVHVVASLLKLFLRELPEPLLTFELYEEFIEAA 84

Query: 108 SGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLAR 143
              ++      L  L++  P  +   LRYL+AHL R
Sbjct: 85  KSEDEEERVEALRELLRKLPPANRDTLRYLLAHLNR 120

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. Length = 152

>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 1/99 (1%)

Query: 49  PGNASQVAELFHAY-SGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLL 107
            G+ S+V EL  A+ SG     + S+ +   +A +LK +L+ L EPLI Y  YE+F+   
Sbjct: 28  SGSKSRVKELRDAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLITYELYEEFIEAA 87

Query: 108 SGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
              ++      L  L+   P  + + LRYL+AHL R+  
Sbjct: 88  KLEDETERLRALRELLSLLPPANRATLRYLLAHLNRVAE 126

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers. Length = 174

>gnl|CDD|215658 pfam00017, SH2, SH2 domain

 Score = 66.8 bits (164), Expect = 5e-14
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 425 MSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAEP 479
           +SR +AE LL + +PDGTFL+R S +  G Y LS+   G  KH  +   + G  +     
Sbjct: 6   ISREEAERLLLNPKPDGTFLVRESESKPGDYTLSVRDDGRVKHYRIQSLDNGGYYISGGV 65

Query: 480 FNIYPSLGALVLHY 493
              + SL  LV HY
Sbjct: 66  T--FNSLPELVEHY 77

Length = 77

>gnl|CDD|198250 cd10387, SH2_SOCS6, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 67.2 bits (164), Expect = 8e-14
 Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
           WYWG I+R +   KLA+  DG+FLVRD+S      +L+ R  G     +I H NGR+ F 
Sbjct: 12  WYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNGRFSFY 71

Query: 277 EPFK---FTSVVELIN 289
           E       TS+V+LI 
Sbjct: 72  EQPDVEGHTSIVDLIE 87

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

 Score = 68.9 bits (169), Expect = 9e-14
 Identities = 26/95 (27%), Positives = 47/95 (49%)

Query: 49  PGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLS 108
            G+AS++ EL   +       +    +   +A +LK YL+ L EPLIP+  Y++F+ L  
Sbjct: 25  SGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFIELAK 84

Query: 109 GSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLAR 143
             ++      L  L++  P  +   L+YL+  L +
Sbjct: 85  IEDEEERIEALKELLKSLPPENRDLLKYLLKLLHK 119

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins. Length = 169

>gnl|CDD|198188 cd09934, SH2_Tec_family, Src homology 2 (SH2) domain found in Tec-like proteins

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 12/110 (10%)

Query: 210 NSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNK-LIKIF 267
            +L   EWY GD+SR      L     +G F+VR++STK G YT++L         +K +
Sbjct: 1   LNLEKYEWYVGDMSRQRAESLLKQEDKEGCFVVRNSSTK-GLYTVSLFTKVPGSPHVKHY 59

Query: 268 H--RN--GRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
           H  +N    +  +E   F ++ ELINY++H S       L TRL YPV  
Sbjct: 60  HIKQNARSEFYLAEKHCFETIPELINYHQHNS-----GGLATRLKYPVCD 104

The Tec protein tyrosine kinase is the founding member of a family that includes Btk, Itk, Bmx, and Txk. The members have a PH domain, a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is involved in B-cell receptor signaling with mutations in Btk responsible for X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency (xid) in mice. Itk is involved in T-cell receptor signaling. Tec is expressed in both T and B cells, and is thought to function in activated and effector T lymphocytes to induce the expression of genes regulated by NFAT transcription factors. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198195 cd09942, SH2_nSH2_p85_like, N-terminal Src homology 2 (nSH2) domain found in p85

 Score = 65.0 bits (159), Expect = 6e-13
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
            +SR +    +   PDGTFL+R ++T  G Y L++   G  K   ++  +  +GF++P  
Sbjct: 13  DISREEVNEKMRDTPDGTFLVRDASTMKGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLT 72

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + S+  L+ +Y  NSL E+N  L   L YPV
Sbjct: 73  -FNSVVELINYYRNNSLAEYNRKLDVKLLYPV 103

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, an internal SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and (2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, (2) p85 iSH2 domain with C2 domain of p110alpha, and (3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 110

>gnl|CDD|198251 cd10388, SH2_SOCS7, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 61.6 bits (150), Expect = 7e-12
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRN 270
            L+D  WYWG +S +D    L++  DG+FLVRD+S     ++L+ R  G+    +I    
Sbjct: 6   ELKDCGWYWGPMSWEDAEKVLSNKPDGSFLVRDSSDDRYIFSLSFRSQGSVHHTRIEQYQ 65

Query: 271 GRYGFSEPFKFT----SVVELINYYKHESLS 297
           G +      KF     S+VE I      S S
Sbjct: 66  GTFSLGSRNKFVDRSQSLVEFIERAVEHSRS 96

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198260 cd10397, SH2_Tec_Btk, Src homology 2 (SH2) domain found in Tec protein, Bruton's tyrosine kinase (Btk)

 Score = 61.0 bits (148), Expect = 1e-11
 Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 14/112 (12%)

Query: 210 NSLRDAEWYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLT-LRKGGTNKLIKIF 267
           +SL   EWY  +++R      L  +  +G F+VRD S+K G+YT++   K   +    I 
Sbjct: 1   DSLEMYEWYSKNMTRSQAEQLLKQEGKEGGFIVRD-SSKAGKYTVSVFAKSAGDPQGVIR 59

Query: 268 HRN------GRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
           H         +Y  +E   F+++ ELINY++H +     + L +RL YPVS 
Sbjct: 60  HYVVCSTPQSQYYLAEKHLFSTIPELINYHQHNA-----AGLISRLKYPVSS 106

A member of the Tec protein tyrosine kinase Btk is expressed in bone marrow, spleen, all hematopoietic cells except T lymphocytes and plasma cells where it plays a crucial role in B cell maturation and mast cell activation. Btk has been shown to interact with GNAQ, PLCG2, protein kinase D1, B-cell linker, SH3BP5, caveolin 1, ARID3A, and GTF2I. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is implicated in the primary immunodeficiency disease X-linked agammaglobulinemia (Bruton's agammaglobulinemia). The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains and it's lack of presence in Txk is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. Two tyrosine phosphorylation (pY) sites have been identified in Btk: one located in the activation loop of the catalytic domain which regulates the transition between open (active) and closed (inactive) states and the other in its SH3 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198268 cd10405, SH2_Vav1, Src homology 2 (SH2) domain found in the Vav1 proteins

 Score = 60.8 bits (147), Expect = 2e-11
 Identities = 31/94 (32%), Positives = 47/94 (50%)

Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
           WY G + R      LA+ +DGT+LVR       E+ ++++     K IKI    G Y  +
Sbjct: 7   WYAGPMERAGAESILANRSDGTYLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRIT 66

Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
           E   F  + EL+ +Y+  SL     +LDT L +P
Sbjct: 67  EKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFP 100

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav1 plays a role in T-cell and B-cell development and activation. It has been identified as the specific binding partner of Nef proteins from HIV-1, resulting in morphological changes, cytoskeletal rearrangements, and the JNK/SAPK signaling cascade, leading to increased levels of viral transcription and replication. Vav1 has been shown to interact with Ku70, PLCG1, Lymphocyte cytosolic protein 2, Janus kinase 2, SIAH2, S100B, Abl gene, ARHGDIB, SHB, PIK3R1, PRKCQ, Grb2, MAPK1, Syk, Linker of activated T cells, Cbl gene and EZH2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198183 cd09929, SH2_BLNK_SLP-76, Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76)

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 13/117 (11%)

Query: 208 ETNSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGE--YTLT--LRKGGTNK 262
           E   L   EWY G+I R +  + L  +  DGTFLVRD+S K+    YTL         N 
Sbjct: 4   EEADLLPKEWYAGNIDRKEAEEALRRSNKDGTFLVRDSSGKDSSQPYTLMVLYNDKVYNI 63

Query: 263 LIKIFHRNGRY----GFSEPFKFTSVVELINYYKHESL----SQYNSTLDTRLLYPV 311
            I+      +Y    G      F+SV E+I +++   L     + N+   T LLY  
Sbjct: 64  QIRFLENTRQYALGTGLRGEETFSSVAEIIEHHQKTPLLLIDGKDNTKDSTCLLYAA 120

BLNK (also known as SLP-65 or BASH) is an important adaptor protein expressed in B-lineage cells. BLNK consists of a N-terminal sterile alpha motif (SAM) domain and a C-terminal SH2 domain. BLNK is a cytoplasmic protein, but a part of it is bound to the plasma membrane through an N-terminal leucine zipper motif and transiently bound to a cytoplasmic domain of Iga through its C-terminal SH2 domain upon B cell antigen receptor (BCR)-stimulation. A non-ITAM phosphotyrosine in Iga is necessary for the binding with the BLNK SH2 domain and/or for normal BLNK function in signaling and B cell activation. Upon phosphorylation BLNK binds Btk and PLCgamma2 through their SH2 domains and mediates PLCgamma2 activation by Btk. BLNK also binds other signaling molecules such as Vav, Grb2, Syk, and HPK1. BLNK has been shown to be necessary for BCR-mediated Ca2+ mobilization, for the activation of mitogen-activated protein kinases such as ERK, JNK, and p38 in a chicken B cell line DT40, and for activation of transcription factors such as NF-AT and NF-kappaB in human or mouse B cells. BLNK is involved in B cell development, B cell survival, activation, proliferation, and T-independent immune responses. BLNK is structurally homologous to SLP-76. SLP-76 and (linker for activation of T cells) LAT are adaptor/linker proteins in T cell antigen receptor activation and T cell development. BLNK interacts with many downstream signaling proteins that interact directly with both SLP-76 and LAT. New data suggest functional complementation of SLP-76 and LAT in T cell antigen receptor function with BLNK in BCR function. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 121

>gnl|CDD|198246 cd10383, SH2_SOCS2, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 59.9 bits (145), Expect = 3e-11
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 15/92 (16%)

Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTL----RKGGTNKLIKI 266
            L    WYWG ++ ++  +KL D  +GTFLVRD+S    +Y LT+      G TN  ++I
Sbjct: 3   ELSQTGWYWGSMTVNEAKEKLQDAPEGTFLVRDSSHS--DYLLTISVKTSAGPTN--LRI 58

Query: 267 FHRNGRYGF-------SEPFKFTSVVELINYY 291
            +++G++         S+  +F SVV LI YY
Sbjct: 59  EYQDGKFRLDSIICVKSKLKQFDSVVHLIEYY 90

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|199827 cd09933, SH2_Src_family, Src homology 2 (SH2) domain found in the Src family of non-receptor tyrosine kinases

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 216 EWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH---R- 269
           EW++G I R D    L       GTFL+R++ T  G Y+L++R G   +   + H   R 
Sbjct: 4   EWFFGKIKRKDAEKLLLAPGNPRGTFLIRESETTPGAYSLSVRDGDDARGDTVKHYRIRK 63

Query: 270 --NGRYGFSEPFKFTSVVELINYYKHES 295
             NG Y  +    F ++ EL+ +Y  ++
Sbjct: 64  LDNGGYYITTRATFPTLQELVQHYSKDA 91

The Src family kinases are nonreceptor tyrosine kinases that have been implicated in pathways regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. It is thought that transforming ability of Src is linked to its ability to activate key signaling molecules in these pathways, rather than through direct activity. As such blocking Src activation has been a target for drug companies. Src family members can be divided into 3 groups based on their expression pattern: 1) Src, Fyn, and Yes; 2) Blk, Fgr, Hck, Lck, and Lyn; and 3) Frk-related kinases Frk/Rak and Iyk/Bsk Of these, cellular c-Src is the best studied and most frequently implicated in oncogenesis. The c-Src contains five distinct regions: a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Src exists in both active and inactive conformations. Negative regulation occurs through phosphorylation of Tyr, resulting in an intramolecular association between phosphorylated Tyr and the SH2 domain of SRC, which locks the protein in a closed conformation. Further stabilization of the inactive state occurs through interactions between the SH3 domain and a proline-rich stretch of residues within the kinase domain. Conversely, dephosphorylation of Tyr allows SRC to assume an open conformation. Full activity requires additional autophosphorylation of a Tyr residue within the catalytic domain. Loss of the negative-regulatory C-terminal segment has been shown to result in increased activity and transforming potential. Phosphorylation of the C-terminal Tyr residue by C-terminal Src kinase (Csk) and Csk homology kinase results in increased intramolecular interactions and consequent Src inactivation. Specific phosphatases, protein tyrosine phosphatase a (PTPa) and the SH-containing phosphatases SHP1/SHP2, have also been shown to take a part in Src activation. Src is also activated by direct binding of focal adhesion kinase (Fak) and Crk-associated substrate (Cas) to the SH2 domain. SRC activity can also be regulated by numerous receptor tyrosine kinases (RTKs), such as Her2, epidermal growth factor receptor (EGFR), fibroblast growth factor receptor, platelet-derived growth factor receptor (PDGFR), and vascular endothelial growth factor receptor (VEGFR). In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198224 cd10361, SH2_Fps_family, Src homology 2 (SH2) domain found in feline sarcoma, Fujinami poultry sarcoma, and fes-related (Fes/Fps/Fer) proteins

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNG---EYTLTLRKGGTNK--LIK 265
            L +  +Y G + R+D  + L    DG FLVR T  K G   +  L++R  G  +  +I 
Sbjct: 2   DLENEPYYHGLLPREDAEELL--KNDGDFLVRKTEPKGGGKRKLVLSVRWDGKIRHFVIN 59

Query: 266 IFHRNGRYGFSEPFKFTSVVELINYYKHESLS 297
                G+Y   E   F S+ ELINYY+     
Sbjct: 60  -RDDGGKYYI-EGKSFKSISELINYYQKTKEP 89

The Fps family consists of members Fps/Fes and Fer/Flk/Tyk3. They are cytoplasmic protein-tyrosine kinases implicated in signaling downstream from cytokines, growth factors and immune receptors. Fes/Fps/Fer contains three coiled-coil regions, an SH2 (Src-homology-2) and a TK (tyrosine kinase catalytic) domain signature. Members here include: Fps/Fes, Fer, Kin-31, and In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 90

>gnl|CDD|198269 cd10406, SH2_Vav2, Src homology 2 (SH2) domain found in the Vav2 proteins

 Score = 57.0 bits (137), Expect = 3e-10
 Identities = 28/96 (29%), Positives = 51/96 (53%)

Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
           W+ G++ R   ++ L   A GT+L+R+   +   + ++++     K IK+  ++     +
Sbjct: 7   WFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHIT 66

Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
           E  KF S++EL+ YY+  SL +    LDT L YP  
Sbjct: 67  EAKKFESLLELVEYYQCHSLKESFKQLDTTLKYPYK 102

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav2 is a GEF for RhoA, RhoB and RhoG and may activate Rac1 and Cdc42. Vav2 has been shown to interact with CD19 and Grb2. Alternatively spliced transcript variants encoding different isoforms have been found for Vav2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 14/108 (12%)

Query: 50  GNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSL--- 106
           G+ ++V +L  A+         S+L P  ++ +LK +L+ L EPLI +  Y  F++L   
Sbjct: 42  GSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLFLRQLPEPLILFRLYNDFIALAKE 101

Query: 107 -LSGSNDRH----------IGSRLFALVQDFPAHHFSALRYLMAHLAR 143
               + +            I  +L  L++  PA +++ L++L+AHL R
Sbjct: 102 IQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYR 149

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|198259 cd10396, SH2_Tec_Itk, Src homology 2 (SH2) domain found in Tec protein, IL2-inducible T-cell kinase (Itk)

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 16/113 (14%)

Query: 210 NSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRK---GGTNKLIK 265
           N+L   EWY  +I+R      L D   +G F+VRD+S   G YT++L     G  N  I+
Sbjct: 1   NNLDQYEWYNKNINRSKAEKLLRDEGKEGGFMVRDSSQP-GLYTVSLYTKAGGEGNPCIR 59

Query: 266 IFH------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
            +H         +Y  +E   F S+ ELI Y+KH +     + L TRL YPVS
Sbjct: 60  HYHIKETNDSPKKYYLAEKHVFNSIPELIEYHKHNA-----AGLVTRLRYPVS 107

A member of the Tec protein tyrosine kinase Itk is expressed thymus, spleen, lymph node, T lymphocytes, NK and mast cells. It plays a role in T-cell proliferation and differentiation, analogous to Tec family kinases Txk. Itk has been shown to interact with Fyn, Wiskott-Aldrich syndrome protein, KHDRBS1, PLCG1, Lymphocyte cytosolic protein 2, Linker of activated T cells, Karyopherin alpha 2, Grb2, and Peptidylprolyl isomerase A. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains and it's lack of presence in Txk is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198190 cd09937, SH2_csk_like, Src homology 2 (SH2) domain found in Carboxyl-Terminal Src Kinase (Csk)

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 5/95 (5%)

Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
           W+ G ISR++    L    DG FLVR+++   G+YTL +   G  +  ++ +RNG+    
Sbjct: 5   WFHGKISREEAERLLQPPEDGLFLVRESTNYPGDYTLCVSFEGKVEHYRVIYRNGKLTID 64

Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
           E   F ++++L+ +Y  ++       L TRL+ P 
Sbjct: 65  EEEYFENLIQLVEHYTKDA-----DGLCTRLVKPK 94

Both the C-terminal Src kinase (CSK) and CSK-homologous kinase (CHK) are members of the CSK-family of protein tyrosine kinases. These proteins suppress activity of Src-family kinases (SFK) by selectively phosphorylating the conserved C-terminal tail regulatory tyrosine by a similar mechanism. CHK is also capable of inhibiting SFKs by a non-catalytic mechanism that involves binding of CHK to SFKs to form stable protein complexes. The unphosphorylated form of SFKs is inhibited by CSK and CHK by a two-step mechanism. The first step involves the formation of a complex of SFKs with CSK/CHK with the SFKs in the complex are inactive. The second step, involves the phosphorylation of the C-terminal tail tyrosine of SFKs, which then dissociates and adopt an inactive conformation. The structural basis of how the phosphorylated SFKs dissociate from CSK/CHK to adopt the inactive conformation is not known. The inactive conformation of SFKs is stabilized by two intramolecular inhibitory interactions: (a) the pYT:SH2 interaction in which the phosphorylated C-terminal tail tyrosine (YT) binds to the SH2 domain, and (b) the linker:SH3 interaction of which the SH2-kinase domain linker binds to the SH3 domain. SFKs are activated by multiple mechanisms including binding of the ligands to the SH2 and SH3 domains to displace the two inhibitory intramolecular interactions, autophosphorylation, and dephosphorylation of YT. By selective phosphorylation and the non-catalytic inhibitory mechanism CSK and CHK are able to inhibit the active forms of SFKs. CSK and CHK are regulated by phosphorylation and inter-domain interactions. They both contain SH3, SH2, and kinase domains separated by the SH3-SH2 connector and SH2 kinase linker, intervening segments separating the three domains. They lack a conserved tyrosine phosphorylation site in the kinase domain and the C-terminal tail regulatory tyrosine phosphorylation site. The CSK SH2 domain is crucial for stabilizing the kinase domain in the active conformation. A disulfide bond here regulates CSK kinase activity. The subcellular localization and activity of CSK are regulated by its SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 49  PGNASQVAELFHAYSGEIKSYNF-----SKLEPALLAIMLKTYLKSLTEPLIPYVYYEKF 103
            GN S+V +L   +  +  +         + +   +A +LK + + L EPL+      +F
Sbjct: 41  SGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREF 100

Query: 104 VSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLAR 143
           +      ++      L  L+ D P  +++ LR LM HLAR
Sbjct: 101 IEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLAR 140

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|198196 cd09943, SH2_Nck_family, Src homology 2 (SH2) domain found in the Nck family

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 216 EWYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYG 274
            WY+G I+R      L     +G FL+RD+ +  G+Y+++L+  G NK  K+   +  Y 
Sbjct: 2   PWYYGRITRHQAETLLNEHGHEGDFLIRDSESNPGDYSVSLKAPGRNKHFKVQVVDNVYC 61

Query: 275 FSEPFKFTSVVELINYYK 292
             +  KF ++ EL+ +YK
Sbjct: 62  IGQR-KFHTMDELVEHYK 78

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 93

>gnl|CDD|199828 cd09941, SH2_Grb2_like, Src homology 2 domain found in Growth factor receptor-bound protein 2 (Grb2) and similar proteins

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYG 274
           W+ G ISR +  + L +   DG FL+R++ +  G+++L+++ G   +  K+     G+Y 
Sbjct: 5   WFHGKISRAEAEEILMNQRPDGAFLIRESESSPGDFSLSVKFGNDVQHFKVLRDGAGKY- 63

Query: 275 FSEPFKFTSVVELINYYKHESLS 297
           F    KF S+ EL++Y++  S+S
Sbjct: 64  FLWVVKFNSLNELVDYHRTTSVS 86

The adaptor proteins here include homologs Grb2 in humans, Sex muscle abnormal protein 5 (Sem-5) in Caenorhabditis elegans, and Downstream of receptor kinase (drk) in Drosophila melanogaster. They are composed of one SH2 and two SH3 domains. Grb2/Sem-5/drk regulates the Ras pathway by linking the tyrosine kinases to the Ras guanine nucleotide releasing protein Sos, which converts Ras to the active GTP-bound state. The SH2 domain of Grb2/Sem-5/drk binds class II phosphotyrosyl peptides while its SH3 domain binds to Sos and Sos-derived, proline-rich peptides. Besides it function in Ras signaling, Grb2 is also thought to play a role in apoptosis. Unlike most SH2 structures in which the peptide binds in an extended conformation (such that the +3 peptide residue occupies a hydrophobic pocket in the protein, conferring a modest degree of selectivity), Grb2 forms several hydrogen bonds via main chain atoms with the side chain of +2 Asn. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 95

>gnl|CDD|199829 cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src homology 2 (N-SH2) domain in Phospholipase C gamma

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 9/90 (10%)

Query: 216 EWYWGDIS--RDDVNDKLADTA---DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRN 270
            W+ G +   RD+    L +     DGTFLVR++ T  G+YTL+  + G  +  +I  R 
Sbjct: 5   PWFHGKLGDGRDEAEKLLLEYCEGGDGTFLVRESETFVGDYTLSFWRNGKVQHCRIRSRQ 64

Query: 271 G----RYGFSEPFKFTSVVELINYYKHESL 296
                +Y  ++   F S+ ELI+YY+   L
Sbjct: 65  ENGEKKYYLTDNLVFDSLYELIDYYRQNPL 94

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198221 cd10358, SH2_PTK6_Brk, Src homology 2 domain found in protein-tyrosine kinase-6 (PTK6) which is also known as breast tumor kinase (Brk)

 Score = 51.7 bits (123), Expect = 2e-08
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 217 WYWGDISRDDVNDKLA--DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRN-GRY 273
           W++G ISR +   +L     A G FL+R +   + +Y L++R     +  KI+ R  GR 
Sbjct: 4   WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRL 63

Query: 274 GFSEPFKFTSVVELINYYKHESLSQ 298
             +E   F S+ EL+NY++ +SLS 
Sbjct: 64  HLNEAVSFLSLPELVNYHRAQSLSH 88

Human protein-tyrosine kinase-6 (PTK6, also known as breast tumor kinase (Brk)) is a member of the non-receptor protein-tyrosine kinase family and is expressed in two-thirds of all breast tumors. PTK6 (9). PTK6 contains a SH3 domain, a SH2 domain, and catalytic domains. For the case of the non-receptor protein-tyrosine kinases, the SH2 domain is typically involved in negative regulation of kinase activity by binding to a phosphorylated tyrosine residue near to the C terminus. The C-terminal sequence of PTK6 (PTSpYENPT where pY is phosphotyrosine) is thought to be a self-ligand for the SH2 domain. The structure of the SH2 domain resembles other SH2 domains except for a centrally located four-stranded antiparallel beta-sheet (strands betaA, betaB, betaC, and betaD). There are also differences in the loop length which might be responsible for PTK6 ligand specificity. There are two possible means of regulation of PTK6: autoinhibitory with the phosphorylation of Tyr playing a role in its negative regulation and autophosphorylation at this site, though it has been shown that PTK6 might phosphorylate signal transduction-associated proteins Sam68 and signal transducing adaptor family member 2 (STAP/BKS) in vivo. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|199829 cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src homology 2 (N-SH2) domain in Phospholipase C gamma

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 10/81 (12%)

Query: 427 RAQAEALLS---GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYET----ERGFGFA 477
           R +AE LL       DGTFL+R S T  G Y LS   +G  +HC +       E+ +   
Sbjct: 15  RDEAEKLLLEYCEGGDGTFLVRESETFVGDYTLSFWRNGKVQHCRIRSRQENGEKKYYLT 74

Query: 478 EPFNIYPSLGALVLHYAANSL 498
           +   ++ SL  L+ +Y  N L
Sbjct: 75  DNL-VFDSLYELIDYYRQNPL 94

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198233 cd10370, SH2_Src_Src42, Src homology 2 (SH2) domain found in the Src oncogene at 42A (Src42)

 Score = 50.6 bits (121), Expect = 4e-08
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 217 WYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRY 273
           WY+G I R +   KL    +  G FL+RD+ +++ +Y+L++R G T K  +I     G +
Sbjct: 5   WYFGKIKRIEAEKKLLLPENEHGAFLIRDSESRHNDYSLSVRDGDTVKHYRIRQLDEGGF 64

Query: 274 GFSEPFKFTSVVELINYYKHES 295
             +    F ++ EL+ +Y  +S
Sbjct: 65  FIARRTTFRTLQELVEHYSKDS 86

Src42 is a member of the Src non-receptor type tyrosine kinase family of proteins. The integration of receptor tyrosine kinase-induced RAS and Src42 signals by Connector eNhancer of KSR (CNK) as a two-component input is essential for RAF activation in Drosophila. Src42 is present in a wide variety of organisms including: California sea hare, pea aphid, yellow fever mosquito, honey bee, Panamanian leafcutter ant, and sea urchin. Src42 has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its C-terminal tail. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 96

>gnl|CDD|198186 cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src homology 2 (C-SH2) domain in Phospholipase C gamma

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 10/91 (10%)

Query: 426 SRAQAEALLSGRP-DGTFLIRPSTTGQ--YALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
           +R QAE +L   P DG FL+RPS T    +A+S    G  KHC + +  R F      + 
Sbjct: 12  TREQAEEMLMRVPRDGAFLVRPSETDPNSFAISFRAEGKIKHCRIKQEGRLFVIGT--SQ 69

Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
           + SL  LV +Y  + L       K  L YPV
Sbjct: 70  FESLVELVSYYEKHPLYR-----KIKLRYPV 95

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198272 cd10409, SH2_Nck2, Src homology 2 (SH2) domain found in Nck

 Score = 50.4 bits (120), Expect = 5e-08
 Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 216 EWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYG 274
           EWY+G+++R      L +   +G FL+RD+ +   +++++L+  G NK  K+   +  Y 
Sbjct: 2   EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKAVGKNKHFKVQLVDNVYC 61

Query: 275 FSEPFKFTSVVELINYYK 292
             +  +F S+ EL+ +YK
Sbjct: 62  IGQR-RFNSMDELVEHYK 78

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198215 cd10352, SH2_a2chimerin_b2chimerin, Src homology 2 (SH2) domain found in alpha2-chimerin and beta2-chimerin proteins

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 218 YWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSE 277
           Y G ISR++    L+  +DG++L+R++S  +G YTL+LR  G  K  K+++    +    
Sbjct: 9   YHGLISREEAEQLLSGASDGSYLIRESSRDDGYYTLSLRFNGKVKNYKLYYDGKNHYHYV 68

Query: 278 PFK-FTSVVELI 288
             K F ++ +L+
Sbjct: 69  GEKRFDTIHDLV 80

Chimerins are a family of phorbol ester- and diacylglycerol-responsive GTPase-activating proteins. Alpha1-chimerin (formerly known as n-chimerin) and alpha2-chimerin are alternatively spliced products of a single gene, as are beta1- and beta2-chimerin. alpha1- and beta1-chimerin have a relatively short N-terminal region that does not encode any recognizable domains, whereas alpha2- and beta2-chimerin both include a functional SH2 domain that can bind to phosphotyrosine motifs within receptors. All of the isoforms contain a GAP domain with specificity in vitro for Rac1 and a diacylglycerol (DAG)-binding C1 domain which allows them to translocate to membranes in response to DAG signaling and anchors them in close proximity to activated Rac. Other C1 domain-containing diacylglycerol receptors including: PKC, Munc-13 proteins, phorbol ester binding scaffolding proteins involved in Ca2+-stimulated exocytosis, and RasGRPs, diacylglycerol-activated guanine-nucleotide exchange factors (GEFs) for Ras and Rap1. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 91

>gnl|CDD|198179 cd09925, SH2_SHC, Src homology 2 (SH2) domain found in SH2 adaptor protein C (SHC)

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 4/45 (8%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCL 466
           +MSR  AE+LL  + DG FL+R STT  GQY L+ + +G PKH L
Sbjct: 13  KMSRRDAESLL--QTDGDFLVRESTTTPGQYVLTGMQNGQPKHLL 55

SHC is involved in a wide variety of pathways including regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. An adapter protein, SHC has been implicated in Ras activation following the stimulation of a number of different receptors, including growth factors [insulin, epidermal growth factor (EGF), nerve growth factor, and platelet derived growth factor (PDGF)], cytokines [interleukins 2, 3, and 5], erythropoietin, and granulocyte/macrophage colony-stimulating factor, and antigens [T-cell and B-cell receptors]. SHC has been shown to bind to tyrosine-phosphorylated receptors, and receptor stimulation leads to tyrosine phosphorylation of SHC. Upon phosphorylation, SHC interacts with another adapter protein, Grb2, which binds to the Ras GTP/GDP exchange factor mSOS which leads to Ras activation. SHC is composed of an N-terminal domain that interacts with proteins containing phosphorylated tyrosines, a (glycine/proline)-rich collagen-homology domain that contains the phosphorylated binding site, and a C-terminal SH2 domain. SH2 has been shown to interact with the tyrosine-phosphorylated receptors of EGF and PDGF and with the tyrosine-phosphorylated C chain of the T-cell receptor, providing one of the mechanisms of T-cell-mediated Ras activation. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198268 cd10405, SH2_Vav1, Src homology 2 (SH2) domain found in the Vav1 proteins

 Score = 50.4 bits (120), Expect = 7e-08
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 425 MSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
           M RA AE++L+ R DGT+L+R       ++A+SI  +   KH  +   E  +   E    
Sbjct: 12  MERAGAESILANRSDGTYLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEK-KA 70

Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
           +  L  LV  Y  NSL++    L TTL +P
Sbjct: 71  FRGLTELVEFYQQNSLKDCFKSLDTTLQFP 100

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav1 plays a role in T-cell and B-cell development and activation. It has been identified as the specific binding partner of Nef proteins from HIV-1, resulting in morphological changes, cytoskeletal rearrangements, and the JNK/SAPK signaling cascade, leading to increased levels of viral transcription and replication. Vav1 has been shown to interact with Ku70, PLCG1, Lymphocyte cytosolic protein 2, Janus kinase 2, SIAH2, S100B, Abl gene, ARHGDIB, SHB, PIK3R1, PRKCQ, Grb2, MAPK1, Syk, Linker of activated T cells, Cbl gene and EZH2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198178 cd09923, SH2_SOCS_family, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) family

 Score = 49.5 bits (119), Expect = 8e-08
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 7/76 (9%)

Query: 425 MSRAQAEALLSGRPDGTFLIRPSTTGQY--ALSIVCSGAPKHC-LVYETERGFGF-AEPF 480
           ++R +AE LL+G+P+GTFL+R S+  +Y  ++S    G   H  + Y   R F F +   
Sbjct: 7   ITRYEAEELLAGKPEGTFLVRDSSDSRYLFSVSFRTYGRTLHARIEYSNGR-FSFDSSDP 65

Query: 481 NI--YPSLGALVLHYA 494
           ++  +P +  L+ HY 
Sbjct: 66  SVPRFPCVVELIEHYV 81

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|198191 cd09938, SH2_N-SH2_Zap70_Syk_like, N-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70) and Spleen tyrosine kinase (Syk) proteins

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 18/105 (17%)

Query: 217 WYWGDISRDDVND--KLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR----- 269
           +++G I+R++  +  KLA  +DG FL+R +    G Y L++  G      K  H      
Sbjct: 3   FFYGSITREEAEEYLKLAGMSDGLFLLRQSLRSLGGYVLSVCHGR-----KFHHYTIERQ 57

Query: 270 -NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
            NG Y  +         EL  Y+  +        L   L  P +R
Sbjct: 58  LNGTYAIAGGKAHCGPAELCEYHSTDL-----DGLVCLLRKPCNR 97

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the N-terminus SH2 domains of both Syk and Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198180 cd09926, SH2_CRK_like, Src homology 2 domain found in cancer-related signaling adaptor protein CRK

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLR 256
           WY+G +SR +  + L     G FLVRD+ST  G+Y L++ 
Sbjct: 9   WYFGPMSRQEAQELLQGQRHGVFLVRDSSTIPGDYVLSVS 48

SH2 domain in the CRK proteins. CRKI (SH2-SH3) and CRKII (SH2-SH3-SH3) are splicing isoforms of the oncoprotein CRK. CRKs regulate transcription and cytoskeletal reorganization for cell growth and motility by linking tyrosine kinases to small G proteins. The SH2 domain of CRK associates with tyrosine-phosphorylated receptors or components of focal adhesions, such as p130Cas and paxillin. CRK transmits signals to small G proteins through effectors that bind its SH3 domain, such as C3G, the guanine-nucleotide exchange factor (GEF) for Rap1 and R-Ras, and DOCK180, the GEF for Rac6. The binding of p130Cas to the CRK-C3G complex activates Rap1, leading to regulation of cell adhesion, and activates R-Ras, leading to JNK-mediated activation of cell proliferation, whereas the binding of CRK DOCK180 induces Rac1-mediated activation of cellular migration. The activity of the different splicing isoforms varies greatly with CRKI displaying substantial transforming activity, CRKII less so, and phosphorylated CRKII with no biological activity whatsoever. CRKII has a linker region with a phosphorylated Tyr and an additional C-terminal SH3 domain. The phosphorylated Tyr creates a binding site for its SH2 domain which disrupts the association between CRK and its SH2 target proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198218 cd10355, SH2_DAPP1_BAM32_like, Src homology 2 domain found in dual adaptor for phosphotyrosine and 3-phosphoinositides ( DAPP1)/B lymphocyte adaptor molecule of 32 kDa (Bam32)-like proteins

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 425 MSRAQAEA-LLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
           ++R  AEA LLS   DG++L+R S   TG ++LS+    + KH  V  T   F F   FN
Sbjct: 13  LTRHAAEALLLSNGVDGSYLLRNSNEGTGLFSLSVRAKDSVKHFHVEYTGYSFKFG--FN 70

Query: 482 IYPSLGALVLHYA 494
            + SL   V H+A
Sbjct: 71  EFSSLQDFVKHFA 83

DAPP1/Bam32 contains a putative myristoylation site at its N-terminus, followed by a SH2 domain, and a pleckstrin homology (PH) domain at its C-terminus. DAPP1 could potentially be recruited to the cell membrane by any of these domains. Its putative myristoylation site could facilitate the interaction of DAPP1 with the lipid bilayer. Its SH2 domain may also interact with phosphotyrosine residues on membrane-associated proteins such as activated tyrosine kinase receptors. And finally its PH domain exhibits a high-affinity interaction with the PtdIns(3,4,5)P(3) PtdIns(3,4)P(2) second messengers produced at the cell membrane following the activation of PI 3-kinases. DAPP1 is thought to interact with both tyrosine phosphorylated proteins and 3-phosphoinositides and therefore may play a role in regulating the location and/or activity of such proteins(s) in response to agonists that elevate PtdIns(3,4,5)P(3) and PtdIns(3,4)P(2). This protein is likely to play an important role in triggering signal transduction pathways that lie downstream from receptor tyrosine kinases and PI 3-kinase. It is likely that DAPP1 functions as an adaptor to recruit other proteins to the plasma membrane in response to extracellular signals. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 92

>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 22/117 (18%)

Query: 50  GNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSG 109
           G  S+V +L  A+         S+L P  ++ +LK YL+ L EPLI +  Y +F+ L   
Sbjct: 42  GAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLYLRQLPEPLILFRLYNEFIGLAKE 101

Query: 110 S---NDRHIGSRLFA-------------------LVQDFPAHHFSALRYLMAHLARM 144
           S   N+     +                      L++  PA +++ L++L+ HL R+
Sbjct: 102 SQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRV 158

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 211

>gnl|CDD|198189 cd09935, SH2_ABL, Src homology 2 (SH2) domain found in Abelson murine lymphosarcoma virus (ABL) proteins

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 16/100 (16%)

Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH------RN 270
           WY G ISR+     L+   +G+FLVR++ +  G+Y+++LR  G     +++H       +
Sbjct: 5   WYHGPISRNAAEYLLSSGINGSFLVRESESSPGQYSISLRYDG-----RVYHYRISEDSD 59

Query: 271 GRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
           G+   ++  +F ++ EL++++     S+    L T L YP
Sbjct: 60  GKVYVTQEHRFNTLAELVHHH-----SKNADGLITTLRYP 94

ABL-family proteins are highly conserved tyrosine kinases. Each ABL protein contains an SH3-SH2-TK (Src homology 3-Src homology 2-tyrosine kinase) domain cassette, which confers autoregulated kinase activity and is common among nonreceptor tyrosine kinases. Several types of posttranslational modifications control ABL catalytic activity, subcellular localization, and stability, with consequences for both cytoplasmic and nuclear ABL functions. Binding partners provide additional regulation of ABL catalytic activity, substrate specificity, and downstream signaling. By combining this cassette with actin-binding and -bundling domain, ABL proteins are capable of connecting phosphoregulation with actin-filament reorganization. Vertebrate paralogs, ABL1 and ABL2, have evolved to perform specialized functions. ABL1 includes nuclear localization signals and a DNA binding domain which is used to mediate DNA damage-repair functions, while ABL2 has additional binding capacity for actin and for microtubules to enhance its cytoskeletal remodeling functions. SH2 is involved in several autoinhibitory mechanism that constrain the enzymatic activity of the ABL-family kinases. In one mechanism SH2 and SH3 cradle the kinase domain while a cap sequence stabilizes the inactive conformation resulting in a locked inactive state. Another involves phosphatidylinositol 4,5-bisphosphate (PIP2) which binds the SH2 domain through residues normally required for phosphotyrosine binding in the linker segment between the SH2 and kinase domains. The SH2 domain contributes to ABL catalytic activity and target site specificity. It is thought that the ABL catalytic site and SH2 pocket have coevolved to recognize the same sequences. Recent work now supports a hierarchical processivity model in which the substrate target site most compatible with ABL kinase domain preferences is phosphorylated with greatest efficiency. If this site is compatible with the ABL SH2 domain specificity, it will then reposition and dock in the SH2 pocket. This mechanism also explains how ABL kinases phosphorylates poor targets on the same substrate if they are properly positioned and how relatively poor substrate proteins might be recruited to ABL through a complex with strong substrates that can also dock with the SH2 pocket. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 94

>gnl|CDD|198261 cd10398, SH2_Tec_Txk, Src homology 2 (SH2) domain found in Tec protein, Txk

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 14/104 (13%)

Query: 216 EWYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTL---RKGGTNKLIKIFH--R 269
           EWY  +I+R+     L  ++ +G F+VRD S   G YT+++    +  T   IK +   +
Sbjct: 7   EWYHKNITRNQAERLLRQESKEGAFIVRD-SRHLGSYTISVFTRARRSTEASIKHYQIKK 65

Query: 270 N--GRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
           N  G++  +E   F S+ ELI Y++H +     + L +RL YPV
Sbjct: 66  NDSGQWYVAERHLFQSIPELIQYHQHNA-----AGLMSRLRYPV 104

A member of the Tec protein tyrosine kinase Txk is expressed in thymus, spleen, lymph node, T lymphocytes, NK cells, mast cell lines, and myeloid cell line. Txk plays a role in TCR signal transduction, T cell development, and selection which is analogous to the function of Itk. Txk has been shown to interact with IFN-gamma. Unlike most of the Tec family members Txk lacks a PH domain. Instead Txk has a unique region containing a palmitoylated cysteine string which has a similar membrane tethering function as the PH domain. Txk also has a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP and crucial to the function of the PH domain. It is not present in Txk which is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 82  MLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHL 141
           + K Y + L  PL+ Y  YEKF   +S ++D     ++  ++Q  P  H+  L +LM HL
Sbjct: 78  LCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHL 137

Query: 142 ARMC 145
           +R+ 
Sbjct: 138 SRLA 141

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|198230 cd10367, SH2_Src_Fgr, Src homology 2 (SH2) domain found in Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog, Fgr

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLR-----KGGTNKLIKIFH 268
           EWY+G I R D   +L    +  G FL+R++ T  G Y+L++R     +G   K  KI  
Sbjct: 4   EWYFGKIGRKDAERQLLSPGNPRGAFLIRESETTKGAYSLSIRDWDQNRGDHVKHYKIRK 63

Query: 269 -RNGRYGFSEPFKFTSVVELINYY 291
              G Y  +   +F +V EL+ +Y
Sbjct: 64  LDTGGYYITTRAQFDTVQELVQHY 87

Fgr is a member of the Src non-receptor type tyrosine kinase family of proteins. The protein contains N-terminal sites for myristoylation and palmitoylation, a PTK domain, and SH2 and SH3 domains which are involved in mediating protein-protein interactions with phosphotyrosine-containing and proline-rich motifs, respectively. Fgr is expressed in B-cells and myeloid cells, localizes to plasma membrane ruffles, and functions as a negative regulator of cell migration and adhesion triggered by the beta-2 integrin signal transduction pathway. Multiple alternatively spliced variants, encoding the same protein, have been identified Fgr has been shown to interact with Wiskott-Aldrich syndrome protein. Fgr has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198185 cd09931, SH2_C-SH2_SHP_like, C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTN-KLIKIFHRNGRYG 274
           W+ G +S  +    L +    G+FLVR++ +K G++ L++R        I I  + G+Y 
Sbjct: 2   WFHGHLSGKEAEKLLLEKGKPGSFLVRESQSKPGDFVLSVRTDDDKVTHIMIRCQGGKYD 61

Query: 275 FSEPFKFTSVVELINYYK 292
                +F S+ +L+ +YK
Sbjct: 62  VGGGEEFDSLTDLVEHYK 79

The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [SIVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198179 cd09925, SH2_SHC, Src homology 2 (SH2) domain found in SH2 adaptor protein C (SHC)

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG 271
           LR   WY G +SR D    L    DG FLVR+++T  G+Y LT  + G  K + +    G
Sbjct: 4   LRGEPWYHGKMSRRDAESLL--QTDGDFLVRESTTTPGQYVLTGMQNGQPKHLLLVDPEG 61

Query: 272 RYGFSEPFKFTSVVELINYYKHESL 296
               ++   F S+  LINY+    L
Sbjct: 62  VVR-TKDRVFESISHLINYHVTNGL 85

SHC is involved in a wide variety of pathways including regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. An adapter protein, SHC has been implicated in Ras activation following the stimulation of a number of different receptors, including growth factors [insulin, epidermal growth factor (EGF), nerve growth factor, and platelet derived growth factor (PDGF)], cytokines [interleukins 2, 3, and 5], erythropoietin, and granulocyte/macrophage colony-stimulating factor, and antigens [T-cell and B-cell receptors]. SHC has been shown to bind to tyrosine-phosphorylated receptors, and receptor stimulation leads to tyrosine phosphorylation of SHC. Upon phosphorylation, SHC interacts with another adapter protein, Grb2, which binds to the Ras GTP/GDP exchange factor mSOS which leads to Ras activation. SHC is composed of an N-terminal domain that interacts with proteins containing phosphorylated tyrosines, a (glycine/proline)-rich collagen-homology domain that contains the phosphorylated binding site, and a C-terminal SH2 domain. SH2 has been shown to interact with the tyrosine-phosphorylated receptors of EGF and PDGF and with the tyrosine-phosphorylated C chain of the T-cell receptor, providing one of the mechanisms of T-cell-mediated Ras activation. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198189 cd09935, SH2_ABL, Src homology 2 (SH2) domain found in Abelson murine lymphosarcoma virus (ABL) proteins

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
            +SR  AE LLS   +G+FL+R S +  GQY++S+   G   H  + E   G  +    +
Sbjct: 9   PISRNAAEYLLSSGINGSFLVRESESSPGQYSISLRYDGRVYHYRISEDSDGKVYVTQEH 68

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
            + +L  LV H++ N+     D L TTL YP
Sbjct: 69  RFNTLAELVHHHSKNA-----DGLITTLRYP 94

ABL-family proteins are highly conserved tyrosine kinases. Each ABL protein contains an SH3-SH2-TK (Src homology 3-Src homology 2-tyrosine kinase) domain cassette, which confers autoregulated kinase activity and is common among nonreceptor tyrosine kinases. Several types of posttranslational modifications control ABL catalytic activity, subcellular localization, and stability, with consequences for both cytoplasmic and nuclear ABL functions. Binding partners provide additional regulation of ABL catalytic activity, substrate specificity, and downstream signaling. By combining this cassette with actin-binding and -bundling domain, ABL proteins are capable of connecting phosphoregulation with actin-filament reorganization. Vertebrate paralogs, ABL1 and ABL2, have evolved to perform specialized functions. ABL1 includes nuclear localization signals and a DNA binding domain which is used to mediate DNA damage-repair functions, while ABL2 has additional binding capacity for actin and for microtubules to enhance its cytoskeletal remodeling functions. SH2 is involved in several autoinhibitory mechanism that constrain the enzymatic activity of the ABL-family kinases. In one mechanism SH2 and SH3 cradle the kinase domain while a cap sequence stabilizes the inactive conformation resulting in a locked inactive state. Another involves phosphatidylinositol 4,5-bisphosphate (PIP2) which binds the SH2 domain through residues normally required for phosphotyrosine binding in the linker segment between the SH2 and kinase domains. The SH2 domain contributes to ABL catalytic activity and target site specificity. It is thought that the ABL catalytic site and SH2 pocket have coevolved to recognize the same sequences. Recent work now supports a hierarchical processivity model in which the substrate target site most compatible with ABL kinase domain preferences is phosphorylated with greatest efficiency. If this site is compatible with the ABL SH2 domain specificity, it will then reposition and dock in the SH2 pocket. This mechanism also explains how ABL kinases phosphorylates poor targets on the same substrate if they are properly positioned and how relatively poor substrate proteins might be recruited to ABL through a complex with strong substrates that can also dock with the SH2 pocket. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 94

>gnl|CDD|198285 cd10718, SH2_CIS, Src homology 2 (SH2) domain found in cytokine-inducible SH2-containing protein (CIS)

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 11/89 (12%)

Query: 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLR--KGGTNKLIKIFHR 269
           LR++ WYWG I+  + +  L    +GTFLVRD+S  +   TL+++  +G TN  ++I + 
Sbjct: 1   LRESGWYWGSITASEAHQALQKAPEGTFLVRDSSHPSYMLTLSVKTTRGPTN--VRIEYS 58

Query: 270 NGRY-------GFSEPFKFTSVVELINYY 291
           +G +              F  VV L+ +Y
Sbjct: 59  DGSFRLDSSSLARPRLLSFPDVVSLVQHY 87

CIS family members are known to be cytokine-inducible negative regulators of cytokine signaling. The expression of the CIS gene can be induced by IL2, IL3, GM-CSF and EPO in hematopoietic cells. Proteasome-mediated degradation of this protein has been shown to be involved in the inactivation of the erythropoietin receptor. Suppressor of cytokine signalling (SOCS) was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 88

>gnl|CDD|198269 cd10406, SH2_Vav2, Src homology 2 (SH2) domain found in the Vav2 proteins

 Score = 48.1 bits (114), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 425 MSRAQAEALLSGRPDGTFLIR--PSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
           M R Q + LL     GT+LIR  P+   ++A+SI  +   KH  V E +      E    
Sbjct: 12  MERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEA-KK 70

Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
           + SL  LV +Y  +SL+E    L TTL YP
Sbjct: 71  FESLLELVEYYQCHSLKESFKQLDTTLKYP 100

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav2 is a GEF for RhoA, RhoB and RhoG and may activate Rac1 and Cdc42. Vav2 has been shown to interact with CD19 and Grb2. Alternatively spliced transcript variants encoding different isoforms have been found for Vav2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198270 cd10407, SH2_Vav3, Src homology 2 (SH2) domain found in the Vav3 proteins

 Score = 47.7 bits (113), Expect = 6e-07
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 425 MSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
           M R QAE  L  R + T+L+R  T  +G+YA+SI  +   KH  +   +  F  AE    
Sbjct: 12  MERLQAETELINRVNSTYLVRHRTKESGEYAISIKYNNEVKHIKILTRDGFFHIAEN-RK 70

Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
           + SL  LV +Y  +SL+E    L TTL +P
Sbjct: 71  FKSLMELVEYYKHHSLKEGFRSLDTTLQFP 100

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav3 preferentially activates RhoA, RhoG and, to a lesser extent, Rac1. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. VAV3 has been shown to interact with Grb2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 40  GLSAANLFE-PGNASQVAELFHAY-SGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPY 97
           GL    LF  PG A+ V +L  A+ +GE  S++ S  +   +A +LK YL+ L EP+IP+
Sbjct: 37  GLKEEGLFRLPGQANLVKQLQDAFDAGERPSFD-SDTDVHTVASLLKLYLRELPEPVIPW 95

Query: 98  VYYEKFVSLLSG---SNDRHIG-SRLFALVQDFPAHHFSALRYL 137
             YE F  L      S D   G   L   V   P  +++ L Y+
Sbjct: 96  AQYEDF--LSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYI 137

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 199

>gnl|CDD|198193 cd09940, SH2_Vav_family, Src homology 2 (SH2) domain found in the Vav family

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 340 SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 375
           SE   F S+VEL+NYY+  SL +  + LDT L +P 
Sbjct: 67  SESRHFKSLVELVNYYERNSLGENFAGLDTTLKWPY 102

Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, Vav2 and Vav3 are more ubiquitously expressed. The members here include insect and amphibian Vavs. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|199827 cd09933, SH2_Src_family, Src homology 2 (SH2) domain found in the Src family of non-receptor tyrosine kinases

 Score = 47.2 bits (113), Expect = 7e-07
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 14/104 (13%)

Query: 418 EKTWLVRMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVY 468
           E+ +  ++ R  AE LL   G P GTFLIR S T  G Y+LS+           KH  + 
Sbjct: 3   EEWFFGKIKRKDAEKLLLAPGNPRGTFLIRESETTPGAYSLSVRDGDDARGDTVKHYRIR 62

Query: 469 ETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
           + + G  +      +P+L  LV HY      +  D L   L  P
Sbjct: 63  KLDNGGYYITTRATFPTLQELVQHY-----SKDADGLCCRLTVP 101

The Src family kinases are nonreceptor tyrosine kinases that have been implicated in pathways regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. It is thought that transforming ability of Src is linked to its ability to activate key signaling molecules in these pathways, rather than through direct activity. As such blocking Src activation has been a target for drug companies. Src family members can be divided into 3 groups based on their expression pattern: 1) Src, Fyn, and Yes; 2) Blk, Fgr, Hck, Lck, and Lyn; and 3) Frk-related kinases Frk/Rak and Iyk/Bsk Of these, cellular c-Src is the best studied and most frequently implicated in oncogenesis. The c-Src contains five distinct regions: a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Src exists in both active and inactive conformations. Negative regulation occurs through phosphorylation of Tyr, resulting in an intramolecular association between phosphorylated Tyr and the SH2 domain of SRC, which locks the protein in a closed conformation. Further stabilization of the inactive state occurs through interactions between the SH3 domain and a proline-rich stretch of residues within the kinase domain. Conversely, dephosphorylation of Tyr allows SRC to assume an open conformation. Full activity requires additional autophosphorylation of a Tyr residue within the catalytic domain. Loss of the negative-regulatory C-terminal segment has been shown to result in increased activity and transforming potential. Phosphorylation of the C-terminal Tyr residue by C-terminal Src kinase (Csk) and Csk homology kinase results in increased intramolecular interactions and consequent Src inactivation. Specific phosphatases, protein tyrosine phosphatase a (PTPa) and the SH-containing phosphatases SHP1/SHP2, have also been shown to take a part in Src activation. Src is also activated by direct binding of focal adhesion kinase (Fak) and Crk-associated substrate (Cas) to the SH2 domain. SRC activity can also be regulated by numerous receptor tyrosine kinases (RTKs), such as Her2, epidermal growth factor receptor (EGFR), fibroblast growth factor receptor, platelet-derived growth factor receptor (PDGFR), and vascular endothelial growth factor receptor (VEGFR). In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198281 cd10418, SH2_Src_Fyn_isoform_a_like, Src homology 2 (SH2) domain found in Fyn isoform a like proteins

 Score = 47.3 bits (112), Expect = 7e-07
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 13/103 (12%)

Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLR-----KGGTNKLIKIFH 268
           EWY+G + R D   +L    +  GTFL+R++ T  G Y+L++R     KG   K  KI  
Sbjct: 4   EWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRK 63

Query: 269 -RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
             NG Y  +   +F ++ +L+ +Y     S+  + L  RL+ P
Sbjct: 64  LDNGGYYITTRAQFETLQQLVQHY-----SERAAGLCCRLVVP 101

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. This cd contains the SH2 domain found in Fyn isoform a type proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198226 cd10363, SH2_Src_HCK, Src homology 2 (SH2) domain found in HCK

 Score = 47.3 bits (112), Expect = 7e-07
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%)

Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLR-----KGGTNKLIKIFH 268
           EW++  ISR D   +L    +  G+F++RD+ T  G Y+L++R      G T K  KI  
Sbjct: 4   EWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPQHGDTVKHYKIRT 63

Query: 269 -RNGRYGFSEPFKFTSVVELINYYKHES 295
             NG +  S    F+++ EL+++YK  +
Sbjct: 64  LDNGGFYISPRSTFSTLQELVDHYKKGN 91

HCK is a member of the Src non-receptor type tyrosine kinase family of proteins and is expressed in hemopoietic cells. HCK is proposed to couple the Fc receptor to the activation of the respiratory burst. It may also play a role in neutrophil migration and in the degranulation of neutrophils. It has two different translational starts that have different subcellular localization. HCK has been shown to interact with BCR gene, ELMO1 Cbl gene, RAS p21 protein activator 1, RASA3, Granulocyte colony-stimulating factor receptor, ADAM15 and RAPGEF1. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its C-terminal tail. In general SH2 domains are involved in signal transduction. HCK has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 40  GLSAANLF-EPGNASQVAELFHAY-SGEIKSYNFSKLE-PALLAIMLKTYLKSLTEPLIP 96
            L+   +F    N   V E+   Y  GE    +F + E   L A++LKT+L+ L EPL+ 
Sbjct: 38  ALTTEGIFRRSANTQVVKEVQQKYNMGE--PVDFDQYEDVHLPAVILKTFLRELPEPLLT 95

Query: 97  YVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLAR 143
           +  Y+  V  L+   +  +  R+  L+Q  P  ++  L+YL+  L +
Sbjct: 96  FDLYDDIVGFLNVDKEERV-ERVKQLLQTLPEENYQVLKYLIKFLVQ 141

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|198265 cd10402, SH2_C-SH2_Zap70, C-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70)

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 217 WYWGDISRDDVNDKLADTA--DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRY 273
           WY G I+RD+   +L   A  DG FL+R+   ++G Y L+L  G T    +I   ++G+Y
Sbjct: 12  WYHGSIARDEAERRLYSGAQPDGKFLLRERK-ESGTYALSLVYGKTVYHYRIDQDKSGKY 70

Query: 274 GFSEPFKFTSVVELINYYK 292
              E  KF ++ +L+ Y K
Sbjct: 71  SIPEGTKFDTLWQLVEYLK 89

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 105

>gnl|CDD|199831 cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain found in the Fyn-related kinase (Frk)

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 217 WYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYG 274
           W++G I R D   +L  ++   G FL+R++ ++ GE++L++  GG  K  +I   +    
Sbjct: 5   WFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGEFSLSVLDGGVVKHYRIRRLDEGGF 64

Query: 275 FSEPFK-FTSVVELINYYKHES 295
           F    K F+++ E +NYY   S
Sbjct: 65  FLTRRKTFSTLNEFVNYYTTTS 86

Frk is a member of the Src non-receptor type tyrosine kinase family of proteins. The Frk subfamily is composed of Frk/Rak and Iyk/Bsk/Gst. It is expressed primarily epithelial cells. Frk is a nuclear protein and may function during G1 and S phase of the cell cycle and suppress growth. Unlike the other Src members it lacks a glycine at position 2 of SH4 which is important for addition of a myristic acid moiety that is involved in targeting Src PTKs to cellular membranes. FRK and SHB exert similar effects when overexpressed in rat phaeochromocytoma (PC12) and beta-cells, where both induce PC12 cell differentiation and beta-cell proliferation. Under conditions that cause beta-cell degeneration these proteins augment beta-cell apoptosis. The FRK-SHB responses involve FAK and insulin receptor substrates (IRS) -1 and -2. Frk has been demonstrated to interact with retinoblastoma protein. Frk regulates PTEN protein stability by phosphorylating PTEN, which in turn prevents PTEN degradation. Frk also plays a role in regulation of embryonal pancreatic beta cell formation. Frk has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its activation loop. The tryosine involved is at the same site as the tyrosine involved in the autophosphorylation of Src. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 96

>gnl|CDD|198206 cd10343, SH2_SHIP, Src homology 2 (SH2) domain found in SH2-containing inositol-5'-phosphatase (SHIP) and SLAM-associated protein (SAP)

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 14/108 (12%)

Query: 214 DAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTL---RKGGTNKLI----K 265
              WY G+I+R    + L+    DG+FLVRD+ + +G Y L +       T +++     
Sbjct: 2   APPWYHGNITRSKAEELLSKAGKDGSFLVRDSESVSGAYALCVLYQNCVHTYRILPNAED 61

Query: 266 IFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
                   G    F FT++ ELI +Y+ E     N  L T LLYPV R
Sbjct: 62  KLSVQASEGVPVRF-FTTLPELIEFYQKE-----NMGLVTHLLYPVER 103

The SH2-containing inositol-5'-phosphatase, SHIP (also called SHIP1/SHIP1a), is a hematopoietic-restricted phosphatidylinositide phosphatase that translocates to the plasma membrane after extracellular stimulation and hydrolyzes the phosphatidylinositol-3-kinase (PI3K)-generated second messenger PI-3,4,5-P3 (PIP3) to PI-3,4-P2. As a result, SHIP dampens down PIP3 mediated signaling and represses the proliferation, differentiation, survival, activation, and migration of hematopoietic cells. PIP3 recruits lipid-binding pleckstrin homology(PH) domain-containing proteins to the inner wall of the plasma membrane and activates them. PH domain-containing downstream effectors include the survival/proliferation enhancing serine/threonine kinase, Akt (protein kinase B), the tyrosine kinase, Btk, the regulator of protein translation, S6K, and the Rac and cdc42 guanine nucleotide exchange factor, Vav. SHIP is believed to act as a tumor suppressor during leukemogenesis and lymphomagenesis, and may play a role in activating the immune system to combat cancer. SHIP contains an N-terminal SH2 domain, a centrally located phosphatase domain that specifically hydrolyzes the 5'-phosphate from PIP3, PI-4,5-P2 and inositol-1,3,4,5- tetrakisphosphate (IP4), a C2 domain, that is an allosteric activating site when bound by SHIP's enzymatic product, PI-3,4-P2; 2 NPXY motifs that bind proteins with a phosphotyrosine binding (Shc, Dok 1, Dok 2) or an SH2 (p85a, SHIP2) domain; and a proline-rich domain consisting of four PxxP motifs that bind a subset of SH3-containing proteins including Grb2, Src, Lyn, Hck, Abl, PLCg1, and PIAS1. The SH2 domain of SHIP binds to the tyrosine phosphorylated forms of Shc, SHP-2, Doks, Gabs, CD150, platelet-endothelial cell adhesion molecule, Cas, c-Cbl, immunoreceptor tyrosine-based inhibitory motifs (ITIMs), and immunoreceptor tyrosine-based activation motifs (ITAMs). The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX(V/I), which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198271 cd10408, SH2_Nck1, Src homology 2 (SH2) domain found in Nck

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 216 EWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYG 274
            WY+G ++R      L +   +G FL+RD+ +   +++++L+  G NK  K+  +   Y 
Sbjct: 2   PWYYGKVTRHQAEMALNERGNEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKECVYC 61

Query: 275 FSEPFKFTSVVELINYYK 292
             +  KF+S+ EL+ +YK
Sbjct: 62  IGQR-KFSSMEELVEHYK 78

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198210 cd10347, SH2_Nterm_shark_like, N-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 11/78 (14%)

Query: 424 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETER----GFG 475
           ++SR  AEALL   G  DG FL+R ST+  G Y LS++  G   H   Y+  R     F 
Sbjct: 7   KISREVAEALLLREGGRDGLFLVRESTSAPGDYVLSLLAQGEVLH---YQIRRHGEDAFF 63

Query: 476 FAEPFNIYPSLGALVLHY 493
             +   I+  L  L+ HY
Sbjct: 64  SDDGPLIFHGLDTLIEHY 81

These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in the carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|198231 cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain found in Fyn

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)

Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLR-----KGGTNKLIKIFH 268
           EWY+G + R D   +L    +  GTFL+R++ T  G Y+L++R     KG   K  KI  
Sbjct: 4   EWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRK 63

Query: 269 -RNGRYGFSEPFKFTSVVELINYY 291
             NG Y  +   +F ++ +L+ +Y
Sbjct: 64  LDNGGYYITTRAQFETLQQLVQHY 87

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198227 cd10364, SH2_Src_Lyn, Src homology 2 (SH2) domain found in Lyn

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 8/88 (9%)

Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRK-----GGTNKLIKIFH 268
           EW++ DI+R D   +L    +  G FL+R++ T  G Y+L++R      G   K  KI  
Sbjct: 4   EWFFKDITRKDAERQLLAPGNSAGAFLIRESETLKGSYSLSVRDYDPQHGDVIKHYKIRS 63

Query: 269 -RNGRYGFSEPFKFTSVVELINYYKHES 295
             NG Y  S    F  + ++I +Y+ +S
Sbjct: 64  LDNGGYYISPRITFPCISDMIKHYQKQS 91

Lyn is a member of the Src non-receptor type tyrosine kinase family of proteins and is expressed in the hematopoietic cells, in neural tissues, liver, and adipose tissue. There are two alternatively spliced forms of Lyn. Lyn plays an inhibitory role in myeloid lineage proliferation. Following engagement of the B cell receptors, Lyn undergoes rapid phosphorylation and activation, triggering a cascade of signaling events mediated by Lyn phosphorylation of tyrosine residues within the immunoreceptor tyrosine-based activation motifs (ITAM) of the receptor proteins, and subsequent recruitment and activation of other kinases including Syk, phospholipase C2 (PLC2) and phosphatidyl inositol-3 kinase. These kinases play critical roles in proliferation, Ca2+ mobilization and cell differentiation. Lyn plays an essential role in the transmission of inhibitory signals through phosphorylation of tyrosine residues within the immunoreceptor tyrosine-based inhibitory motifs (ITIM) in regulatory proteins such as CD22, PIR-B and FC RIIb1. Their ITIM phosphorylation subsequently leads to recruitment and activation of phosphatases such as SHIP-1 and SHP-1 which further down modulate signaling pathways, attenuate cell activation and can mediate tolerance. Lyn also plays a role in the insulin signaling pathway. Activated Lyn phosphorylates insulin receptor substrate 1 (IRS1) leading to an increase in translocation of Glut-4 to the cell membrane and increased glucose utilization. It is the primary Src family member involved in signaling downstream of the B cell receptor. Lyn plays an unusual, 2-fold role in B cell receptor signaling; it is essential for initiation of signaling but is also later involved in negative regulation of the signal. Lyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198228 cd10365, SH2_Src_Src, Src homology 2 (SH2) domain found in tyrosine kinase sarcoma (Src)

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH----- 268
           EWY+G I+R +    L +  +  GTFLVR++ T  G Y L++      K + + H     
Sbjct: 4   EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63

Query: 269 -RNGRYGFSEPFKFTSVVELINYYKHES 295
             +G +  +   +F S+ +L+ YY   +
Sbjct: 64  LDSGGFYITSRTQFNSLQQLVAYYSKHA 91

Src is a member of the Src non-receptor type tyrosine kinase family of proteins. Src is thought to play a role in the regulation of embryonic development and cell growth. Members here include v-Src and c-Src. v-Src lacks the C-terminal inhibitory phosphorylation site and is therefore constitutively active as opposed to normal cellular src (c-Src) which is only activated under certain circumstances where it is required (e.g. growth factor signaling). v-Src is an oncogene whereas c-Src is a proto-oncogene. c-Src consists of three domains, an N-terminal SH3 domain, a central SH2 domain and a tyrosine kinase domain. The SH2 and SH3 domains work together in the auto-inhibition of the kinase domain. The phosphorylation of an inhibitory tyrosine near the c-terminus of the protein produces a binding site for the SH2 domain which then facilitates binding of the SH3 domain to a polyproline site within the linker between the SH2 domain and the kinase domain. Binding of the SH3 domain inactivates the enzyme. This allows for multiple mechanisms for c-Src activation: dephosphorylation of the C-terminal tyrosine by a protein tyrosine phosphatase, binding of the SH2 domain by a competitive phospho-tyrosine residue, or competitive binding of a polyproline binding site to the SH3 domain. Unlike most other Src members Src lacks cysteine residues in the SH4 domain that undergo palmitylation. Serine and threonine phosphorylation sites have also been identified in the unique domains of Src and are believed to modulate protein-protein interactions or regulate catalytic activity. Alternatively spliced forms of Src, which contain 6- or 11-amino acid insertions in the SH3 domain, are expressed in CNS neurons. c-Src has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198245 cd10382, SH2_SOCS1, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 218 YWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSE 277
           YWG +S ++ + KL     GTFL+RD+  KN  + L+++       I+I  + G++    
Sbjct: 13  YWGPLSVEEAHAKLKREPVGTFLIRDSRQKNCFFALSVKMASGPVSIRILFKAGKFSLDG 72

Query: 278 PFK-FTSVVELINYY 291
             + F  + +L+ +Y
Sbjct: 73  SKESFDCLFKLLEHY 87

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198215 cd10352, SH2_a2chimerin_b2chimerin, Src homology 2 (SH2) domain found in alpha2-chimerin and beta2-chimerin proteins

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 425 MSRAQAEALLSGRPDGTFLIR--PSTTGQYALSIVCSGAPKHCLVY 468
           +SR +AE LLSG  DG++LIR      G Y LS+  +G  K+  +Y
Sbjct: 13  ISREEAEQLLSGASDGSYLIRESSRDDGYYTLSLRFNGKVKNYKLY 58

Chimerins are a family of phorbol ester- and diacylglycerol-responsive GTPase-activating proteins. Alpha1-chimerin (formerly known as n-chimerin) and alpha2-chimerin are alternatively spliced products of a single gene, as are beta1- and beta2-chimerin. alpha1- and beta1-chimerin have a relatively short N-terminal region that does not encode any recognizable domains, whereas alpha2- and beta2-chimerin both include a functional SH2 domain that can bind to phosphotyrosine motifs within receptors. All of the isoforms contain a GAP domain with specificity in vitro for Rac1 and a diacylglycerol (DAG)-binding C1 domain which allows them to translocate to membranes in response to DAG signaling and anchors them in close proximity to activated Rac. Other C1 domain-containing diacylglycerol receptors including: PKC, Munc-13 proteins, phorbol ester binding scaffolding proteins involved in Ca2+-stimulated exocytosis, and RasGRPs, diacylglycerol-activated guanine-nucleotide exchange factors (GEFs) for Ras and Rap1. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 91

>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 12/109 (11%)

Query: 50  GNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLL-- 107
           G+ ++V +L  A+       + S   P  +  +LK +LK L EP++P+  Y+ F++L   
Sbjct: 42  GSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLKELPEPVLPFQLYDDFIALAKE 101

Query: 108 ----------SGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
                     S S   +I   L  L+   P  +++ LR+LMAHL R+  
Sbjct: 102 LQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAE 150

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|198229 cd10366, SH2_Src_Yes, Src homology 2 (SH2) domain found in Yes

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 8/88 (9%)

Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLR-----KGGTNKLIKIFH 268
           EWY+G + R D    L +  +  G FLVR++ T  G Y+L++R     +G   K  KI  
Sbjct: 4   EWYFGKMGRKDAERLLLNPGNQRGIFLVRESETTKGAYSLSIRDWDEVRGDNVKHYKIRK 63

Query: 269 -RNGRYGFSEPFKFTSVVELINYYKHES 295
             NG Y  +   +F ++ +L+ +Y   +
Sbjct: 64  LDNGGYYITTRAQFDTLQKLVKHYTEHA 91

Yes is a member of the Src non-receptor type tyrosine kinase family of proteins. Yes is the cellular homolog of the Yamaguchi sarcoma virus oncogene. In humans it is encoded by the YES1 gene which maps to chromosome 18 and is in close proximity to thymidylate synthase. A corresponding Yes pseudogene has been found on chromosome 22. YES1 has been shown to interact with Janus kinase 2, CTNND1,RPL10, and Occludin. Yes1 has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198190 cd09937, SH2_csk_like, Src homology 2 (SH2) domain found in Carboxyl-Terminal Src Kinase (Csk)

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
           ++SR +AE LL    DG FL+R ST   G Y L +   G  +H  V          E   
Sbjct: 9   KISREEAERLLQPPEDGLFLVRESTNYPGDYTLCVSFEGKVEHYRVIYRNGKLTIDEE-E 67

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + +L  LV HY  ++     D L T L  P 
Sbjct: 68  YFENLIQLVEHYTKDA-----DGLCTRLVKPK 94

Both the C-terminal Src kinase (CSK) and CSK-homologous kinase (CHK) are members of the CSK-family of protein tyrosine kinases. These proteins suppress activity of Src-family kinases (SFK) by selectively phosphorylating the conserved C-terminal tail regulatory tyrosine by a similar mechanism. CHK is also capable of inhibiting SFKs by a non-catalytic mechanism that involves binding of CHK to SFKs to form stable protein complexes. The unphosphorylated form of SFKs is inhibited by CSK and CHK by a two-step mechanism. The first step involves the formation of a complex of SFKs with CSK/CHK with the SFKs in the complex are inactive. The second step, involves the phosphorylation of the C-terminal tail tyrosine of SFKs, which then dissociates and adopt an inactive conformation. The structural basis of how the phosphorylated SFKs dissociate from CSK/CHK to adopt the inactive conformation is not known. The inactive conformation of SFKs is stabilized by two intramolecular inhibitory interactions: (a) the pYT:SH2 interaction in which the phosphorylated C-terminal tail tyrosine (YT) binds to the SH2 domain, and (b) the linker:SH3 interaction of which the SH2-kinase domain linker binds to the SH3 domain. SFKs are activated by multiple mechanisms including binding of the ligands to the SH2 and SH3 domains to displace the two inhibitory intramolecular interactions, autophosphorylation, and dephosphorylation of YT. By selective phosphorylation and the non-catalytic inhibitory mechanism CSK and CHK are able to inhibit the active forms of SFKs. CSK and CHK are regulated by phosphorylation and inter-domain interactions. They both contain SH3, SH2, and kinase domains separated by the SH3-SH2 connector and SH2 kinase linker, intervening segments separating the three domains. They lack a conserved tyrosine phosphorylation site in the kinase domain and the C-terminal tail regulatory tyrosine phosphorylation site. The CSK SH2 domain is crucial for stabilizing the kinase domain in the active conformation. A disulfide bond here regulates CSK kinase activity. The subcellular localization and activity of CSK are regulated by its SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 11/112 (9%)

Query: 40  GLSAANLFE-PGNASQVAELFHAYSG------EIKSYNFSKLEPALLAIMLKTYLKSLTE 92
           G++   LF   G AS++  L  A           + Y+    +P  +A  LK+YL+ L +
Sbjct: 35  GMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYS----DPHAVASALKSYLRELPD 90

Query: 93  PLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARM 144
           PL+ Y  YE +V   +  ++      ++ ++   P  +   LRYL+  L+++
Sbjct: 91  PLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKL 142

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|198282 cd10419, SH2_Src_Fyn_isoform_b_like, Src homology 2 (SH2) domain found in Fyn isoform b like proteins

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 217 WYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLR-----KGGTNKLIKIFH- 268
           WY+G + R D   +L    +  GTFL+R++ T  G Y+L++R     KG   K  KI   
Sbjct: 5   WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 64

Query: 269 RNGRYGFSEPFKFTSVVELINYYKHES 295
            NG Y  +   +F ++ +L+ +Y  ++
Sbjct: 65  DNGGYYITTRAQFETLQQLVQHYSEKA 91

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. This cd contains the SH2 domain found in Fyn isoform b type proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198203 cd10340, SH2_N-SH2_SHP_like, N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 4/98 (4%)

Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W+   IS  +  + L     DG+FL R + +  G++TL++R+G     IKI +    Y  
Sbjct: 2   WFHPVISGIEAENLLKTRGVDGSFLARPSKSNPGDFTLSVRRGDEVTHIKIQNTGDYYDL 61

Query: 276 SEPFKFTSVVELINYY--KHESLSQYNSTLDTRLLYPV 311
               KF ++ EL+ YY  +H  L + N  +   L YP+
Sbjct: 62  YGGEKFATLSELVQYYMEQHGQLREKNGDV-IELKYPL 98

The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [IVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 83  LKTYLKSLTEPLIPYVYYEKFVSLL-SGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHL 141
           LKTYL++L EPL+ Y  +  F++   S + +  + + + +LV   P  +   L  L+ HL
Sbjct: 93  LKTYLRNLPEPLMTYELHNDFINAAKSENLESRVNA-IHSLVHKLPEKNREMLELLIKHL 151

Query: 142 ARMCAL 147
             +   
Sbjct: 152 TNVSDH 157

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|198197 cd09944, SH2_Grb7_family, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 7 (Grb7) proteins

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 24/110 (21%)

Query: 217 WYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH------ 268
           W+ G ISRD+    +      DG FLVR++ +  G + L+L+ G      KI H      
Sbjct: 7   WFHGGISRDEAARLIRQQGLVDGVFLVRESQSNPGAFVLSLKHGQ-----KIKHYQIIPI 61

Query: 269 -RNGRYGFS---EPFKFTSVVELINYYKHESLSQYNS-TLDTRLLYPVSR 313
              G++ F+      KF  +++L+ +Y      Q N+ +L TRL +  +R
Sbjct: 62  EDEGQWYFTLDDGVTKFYDLLQLVEFY------QLNAGSLPTRLKHYCTR 105

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. There are 3 members of the Grb7 family of proteins: Grb7, Grb10, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb7 binds strongly to the erbB2 receptor, unlike Grb10 and Grb14 which bind weakly to it. Grb14 binds to Fibroblast Growth Factor Receptor (FGFR). Grb10 has been shown to interact with many different proteins, including the insulin and IGF1 receptors, platelet-derived growth factor (PDGF) receptor-beta, Ret, Kit, Raf1 and MEK1, and Nedd4. Grb7 family proteins are phosphorylated on serine/threonine as well as tyrosine residues. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198254 cd10391, SH2_SHE, Src homology 2 domain found in SH2 domain-containing adapter protein E (SHE)

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 3/97 (3%)

Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKG-GTNKLIKIFHRNGRYGF 275
           WY G ISR +   +L    + ++LVR++ + N +Y++ L+   G   +I    ++ +Y  
Sbjct: 3   WYHGSISRAEAESRLQPCKEASYLVRNSESGNSKYSIALKTSQGCVHIIVAQTKDNKYTL 62

Query: 276 SEPFK-FTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
           ++    F S+ E+++YY +E L  +       LL+PV
Sbjct: 63  NQTSAVFDSIPEVVHYYSNEKLP-FKGAEHMTLLHPV 98

SHE is expressed in heart, lung, brain, and skeletal muscle. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 1/99 (1%)

Query: 50  GNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSG 109
           G+ +++ EL      +  S N       ++A + K +L+ L  PL+ +  YE+F+  +  
Sbjct: 41  GSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGL 100

Query: 110 SNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQ 148
              R     +++++      H + L  L+ HL R+ ALQ
Sbjct: 101 QERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRI-ALQ 138

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|198219 cd10356, SH2_ShkA_ShkC, Src homology 2 (SH2) domain found in SH2 domain-bearing protein kinases A and C (ShkA and ShkC)

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLT-LRKGGTNKLIKIFHRNGRYGF 275
           W+ GDIS  +  ++L    +GTFLVR ++++ G YT++ + K G     +I    G++  
Sbjct: 12  WFHGDISTSESENRLNGKPEGTFLVRFSTSEPGAYTISKVSKNGGISHQRIHRPGGKFQV 71

Query: 276 SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSS 316
           +   K+ SV ELI           ++        P+     
Sbjct: 72  NN-SKYLSVKELIA--GEAQALGIDTPCLGSRFLPLIYKMQ 109

SH2-bearing genes cloned from Dictyostelium include two transcription factors, STATa and STATc, and a signaling factor, SHK1 (shkA). A database search of the Dictyostelium discoideum genome revealed two additional putative STAT sequences, dd-STATb and dd-STATd, and four additional putative SHK genes, dd-SHK2 (shkB), dd-SHK3 (shkC), dd-SHK4 (shkD), and dd-SHK5 (shkE). This model contains members of shkA and shkC. All of the SHK members are most closely related to the protein kinases found in plants. However these kinases in plants are not conjugated to any SH2 or SH2-like sequences. Alignment data indicates that the SHK SH2 domains carry some features of the STAT SH2 domains in Dictyostelium. When STATc's linker domain was used for a BLAST search, the sequence between the protein kinase domain and the SH2 domain (the linker) of SHK was recovered, suggesting a close relationship among these molecules within this region. SHK's linker domain is predicted to contain an alpha-helix which is indeed homologous to that of STAT. Based on the phylogenetic alignment, SH2 domains can be grouped into two categories, STAT-type and Src-type. SHK family members are in between, but are closer to the STAT-type which indicates a close relationship between SHK and STAT families in their SH2 domains and further supports the notion that SHKs linker-SH2 domain evolved from STAT or STATL (STAT-like Linker-SH2) domain found in plants. In SHK, STAT, and SPT6, the linker-SH2 domains all reside exclusively in the C-terminal regions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 113

>gnl|CDD|198198 cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2 domain found in SH2 domain-containing adapter proteins B, D, E, and F (SHB, SHD, SHE, SHF)

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 6/79 (7%)

Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRY-- 273
           WY G I+R +    L    +G++LVR++ +   +Y+L+L+       ++I     G+Y  
Sbjct: 3   WYHGAITRIEAESLLRPCKEGSYLVRNSESTKQDYSLSLKSAKGFMHMRIQRNETGQYIL 62

Query: 274 -GFSEPFKFTSVVELINYY 291
             FS PF+  ++ E+I +Y
Sbjct: 63  GQFSRPFE--TIPEMIRHY 79

SHB, SHD, SHE, and SHF are SH2 domain-containing proteins that play various roles throughout the cell. SHB functions in generating signaling compounds in response to tyrosine kinase activation. SHB contains proline-rich motifs, a phosphotyrosine binding (PTB) domain, tyrosine phosphorylation sites, and a SH2 domain. SHB mediates certain aspects of platelet-derived growth factor (PDGF) receptor-, fibroblast growth factor (FGF) receptor-, neural growth factor (NGF) receptor TRKA-, T cell receptor-, interleukin-2 (IL-2) receptor- and focal adhesion kinase- (FAK) signaling. SRC-like FYN-Related Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB regulate apoptosis, proliferation and differentiation. SHB promotes apoptosis and is also required for proper mitogenicity, spreading and tubular morphogenesis in endothelial cells. SHB also plays a role in preventing early cavitation of embryoid bodies and reduces differentiation to cells expressing albumin, amylase, insulin and glucagon. SHB is a multifunctional protein that has difference responses in different cells under various conditions. SHE is expressed in heart, lung, brain, and skeletal muscle, while expression of SHD is restricted to the brain. SHF is mainly expressed in skeletal muscle, brain, liver, prostate, testis, ovary, small intestine, and colon. SHD may be a physiological substrate of c-Abl and may function as an adapter protein in the central nervous system. It is also thought to be involved in apoptotic regulation. SHD contains five YXXP motifs, a substrate sequence preferred by Abl tyrosine kinases, in addition to a poly-proline rich region and a C-terminal SH2 domain. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. SHF contains four putative tyrosine phosphorylation sites and an SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 83  LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLA 142
           LK Y + L  P+I Y  Y KF+     SN       +   +   P  H+  LRYLM HL 
Sbjct: 78  LKLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLK 137

Query: 143 RMCALQYA 150
           R+  L   
Sbjct: 138 RV-TLHEK 144

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 194

>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query: 40  GLSAANLFE-PGNASQVAELFHAY-SGEIKSYNFSKLEPALLAI-MLKTYLKSLTEPLIP 96
           GL    LF   GNA  V  L     SGE    + SK      A  +L+ +L+ L E LIP
Sbjct: 35  GLEQEGLFRVNGNAETVEWLRQRLDSGEEV--DLSKEADVCSAASLLRLFLQELPEGLIP 92

Query: 97  YVYYEKFVSLLS-GSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
                + + L    + +   G +L  L+Q  P  ++S L++L   L+ + +
Sbjct: 93  ASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVAS 143

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude. Length = 189

>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 82  MLKTYLKSLTEPLIPYVYYEKFVSL--LSGSNDRHIGSRLFALVQDFPAHHFSALRYLMA 139
           +LK++ + L EPL     Y  F+    +    +R     L  L+   P HH+  L++L+ 
Sbjct: 79  LLKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLK--ELRRLIHSLPDHHYETLKHLIR 136

Query: 140 HLAR 143
           HL  
Sbjct: 137 HLKT 140

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239853 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 40  GLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVY 99
           GL ++ L+   ++S + EL      +  S +  + + A LA  LK YL  L  P+IP   
Sbjct: 30  GLESSTLYRTQSSSSLTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNPVIPAPV 89

Query: 100 YEKFVSLL--SGSNDRHIGS-RLFALVQDFPAHHFSALRYLMAHLARMC 145
           Y + +S      S+D +    R      + P  ++  L+YL+ H  R+C
Sbjct: 90  YSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLC 138

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 10/112 (8%)

Query: 38  DCGLSAANLFE-PGNASQVAELFHAYSGEIKSYNFSKLEPAL--LAIMLKTYLKSLTEPL 94
             GL    ++   GN + +  L   +  +  + +    +  +  +A  LK++   L +PL
Sbjct: 28  ATGLETEGIYRVSGNKTHLDSLQKQFD-QDHNLDLVSKDFTVNAVAGALKSFFSELPDPL 86

Query: 95  IPYVYYEKFVSLLSGSNDRHIGSRLFAL---VQDFPAHHFSALRYLMAHLAR 143
           IPY  + + V   +  NDR    RL AL   ++ FP  +F   +Y++ HL +
Sbjct: 87  IPYSMHLELVE-AAKINDRE--QRLHALKELLKKFPPENFDVFKYVITHLNK 135

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 185

>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 50  GNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSG 109
           G+A+++ EL      +  S N       ++  +LK +L+ L EPL+ +  YE F+  +  
Sbjct: 41  GSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQWLRELPEPLMTFELYENFLRAMEL 100

Query: 110 SNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQ 148
              +     L+++++  P  + + L  L+ HL R+ ALQ
Sbjct: 101 EEKQERVRALYSVLEQLPRANLNTLERLIFHLVRV-ALQ 138

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|198210 cd10347, SH2_Nterm_shark_like, N-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 217 WYWGDISRDDVNDKLA--DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYG 274
           WY G ISR+     L      DG FLVR++++  G+Y L+L   G     +I  R+G   
Sbjct: 3   WYHGKISREVAEALLLREGGRDGLFLVRESTSAPGDYVLSLLAQGEVLHYQI-RRHGEDA 61

Query: 275 FS---EPFKFTSVVELINYY 291
           F     P  F  +  LI +Y
Sbjct: 62  FFSDDGPLIFHGLDTLIEHY 81

These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in the carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|198207 cd10344, SH2_SLAP, Src homology 2 domain found in Src-like adaptor proteins

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 421 WL-VRMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYET 470
           WL   +SR +AE LL   G   G+FLIR S T  G Y+LS+   G+      KH  ++  
Sbjct: 12  WLFEGLSREKAEELLMLPGNQVGSFLIRESETRRGCYSLSVRHRGSQSRDSVKHYRIFRL 71

Query: 471 ERGFGFAEPFNIYPSLGALVLHYAANS 497
           + G+ +  P   +  L  +V HY+ ++
Sbjct: 72  DNGWFYISPRLTFQCLEDMVNHYSESA 98

SLAP belongs to the subfamily of adapter proteins that negatively regulate cellular signaling initiated by tyrosine kinases. It has a myristylated N-terminus, SH3 and SH2 domains with high homology to Src family tyrosine kinases, and a unique C-terminal tail, which is important for c-Cbl binding. SLAP negatively regulates platelet-derived growth factor (PDGF)-induced mitogenesis in fibroblasts and regulates F-actin assembly for dorsal ruffles formation. c-Cbl mediated SLAP inhibition towards actin remodeling. Moreover, SLAP enhanced PDGF-induced c-Cbl phosphorylation by SFK. In contrast, SLAP mitogenic inhibition was not mediated by c-Cbl, but it rather involved a competitive mechanism with SFK for PDGF-receptor (PDGFR) association and mitogenic signaling. Accordingly, phosphorylation of the Src mitogenic substrates Stat3 and Shc were reduced by SLAP. Thus, we concluded that SLAP regulates PDGFR signaling by two independent mechanisms: a competitive mechanism for PDGF-induced Src mitogenic signaling and a non-competitive mechanism for dorsal ruffles formation mediated by c-Cbl. SLAP is a hematopoietic adaptor containing Src homology (SH)3 and SH2 motifs and a unique carboxy terminus. Unlike c-Src, SLAP lacks a tyrosine kinase domain. Unlike c-Src, SLAP does not impact resorptive function of mature osteoclasts but induces their early apoptosis. SLAP negatively regulates differentiation of osteoclasts and proliferation of their precursors. Conversely, SLAP decreases osteoclast death by inhibiting activation of caspase 3. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198217 cd10354, SH2_Cterm_RasGAP, C-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP)

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 216 EWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF----HRN 270
            W+ G ISR++  + L      G+FLVR++    G+Y+L+ R    N+ IK F      N
Sbjct: 1   IWFHGKISREEAYNMLVKVGGPGSFLVRESDNTPGDYSLSFR---VNEGIKHFKIIPTGN 57

Query: 271 GRYGFSEPFKFTSVVELINYY 291
            ++       F+S+ ++I+ Y
Sbjct: 58  NQF-MMGGRYFSSLDDVIDRY 77

RasGAP is part of the GAP1 family of GTPase-activating proteins. The protein is located in the cytoplasm and stimulates the GTPase activity of normal RAS p21, but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in RAS inactivation, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Alternative splicing results in two isoforms. The shorter isoform which lacks the N-terminal hydrophobic region, has the same activity, and is expressed in placental tissues. In general longer isoform contains 2 SH2 domains, a SH3 domain, a pleckstrin homology (PH) domain, and a calcium-dependent phospholipid-binding C2 domain. The C-terminus contains the catalytic domain of RasGap which catalyzes the activation of Ras by hydrolyzing GTP-bound active Ras into an inactive GDP-bound form of Ras. This model contains the C-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 77

>gnl|CDD|198262 cd10399, SH2_Tec_Bmx, Src homology 2 (SH2) domain found in Tec protein, Bmx

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 16/108 (14%)

Query: 214 DAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTL------RKGGTNKLIKI 266
             +W+ G+ISR      L     +G F+VR++S + G YT++L       K GT K   +
Sbjct: 5   AYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSS-QVGMYTVSLFSKAVNDKKGTVKHYHV 63

Query: 267 FHRN--GRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
            H N   +   +E + F S+ +LI+Y++H S     + + TRL +PVS
Sbjct: 64  -HTNAENKLYLAENYCFDSIPKLIHYHQHNS-----AGMITRLRHPVS 105

A member of the Tec protein tyrosine kinase Bmx is expressed in the endothelium of large arteries, fetal endocardium, adult endocardium of the left ventricle, bone marrow, lung, testis, granulocytes, myeloid cell lines, and prostate cell lines. Bmx is involved in the regulation of Rho and serum response factor (SRF). Bmx has been shown to interact with PAK1, PTK2, PTPN21, and RUFY1. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains. It is not present in Txk and the type 1 splice form of the Drosophila homolog. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198220 cd10357, SH2_ShkD_ShkE, Src homology 2 (SH2) domain found in SH2 domain-bearing protein kinases D and E (ShkD and ShkE)

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 208 ETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTST--KNGEYTLTLRKGGTN--KL 263
             N L    W+ GDISRD+   +L    +GTFL+R +ST  K   +T++ +K      K 
Sbjct: 3   NINILLAKSWFHGDISRDEAEKRLRGRPEGTFLIRLSSTDPKKTPFTISKKKKSKPVHKR 62

Query: 264 IKIFHRNGRYGFSEPFKFTSVVELI 288
           I     N    F  P  +   V L 
Sbjct: 63  ISRIDVNNYTSFKIPGGYAVSVPLD 87

SH2-bearing genes cloned from Dictyostelium include two transcription factors, STATa and STATc, and a signaling factor, SHK1 (shkA). A database search of the Dictyostelium discoideum genome revealed two additional putative STAT sequences, dd-STATb and dd-STATd, and four additional putative SHK genes, dd-SHK2 (shkB), dd-SHK3 (shkC), dd-SHK4 (shkD), and dd-SHK5 (shkE). This model contains members of shkD and shkE. All of the SHK members are most closely related to the protein kinases found in plants. However these kinases in plants are not conjugated to any SH2 or SH2-like sequences. Alignment data indicates that the SHK SH2 domains carry some features of the STAT SH2 domains in Dictyostelium. When STATc's linker domain was used for a BLAST search, the sequence between the protein kinase domain and the SH2 domain (the linker) of SHK was recovered, suggesting a close relationship among these molecules within this region. SHK's linker domain is predicted to contain an alpha-helix which is indeed homologous to that of STAT. Based on the phylogenetic alignment, SH2 domains can be grouped into two categories, STAT-type and Src-type. SHK family members are in between, but are closer to the STAT-type which indicates a close relationship between SHK and STAT families in their SH2 domains and further supports the notion that SHKs linker-SH2 domain evolved from STAT or STATL (STAT-like Linker-SH2) domain found in plants. In SHK, STAT, and SPT6, the linker-SH2 domains all reside exclusively in the C-terminal regions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 87

>gnl|CDD|198184 cd09930, SH2_cSH2_p85_like, C-terminal Src homology 2 (cSH2) domain found in p85

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 339 FSEPFK-FTSVVELINYYKHESLSQYNSTLDTRLLYPV 375
           F+EP+  + S+ EL+ +Y H SL Q+N +L   L YPV
Sbjct: 65  FAEPYNLYESLKELVLHYAHNSLEQHNDSLTVTLAYPV 102

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, a inter SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and 2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, 2) p85 iSH2 domain with C2 domain of p110alpha, and 3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198186 cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src homology 2 (C-SH2) domain in Phospholipase C gamma

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 13/102 (12%)

Query: 216 EWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRY- 273
           EW+  +++R+   + L     DG FLVR + T    + ++ R  G  K  +I  + GR  
Sbjct: 5   EWFHANLTREQAEEMLMRVPRDGAFLVRPSETDPNSFAISFRAEGKIKHCRI-KQEGRLF 63

Query: 274 --GFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
             G S+   F S+VEL++YY+   L  Y      +L YPV+ 
Sbjct: 64  VIGTSQ---FESLVELVSYYEKHPL--YRK---IKLRYPVNE 97

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198252 cd10389, SH2_SHB, Src homology 2 domain found in SH2 domain-containing adapter protein B (SHB)

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRY--G 274
           WY G ISR D  + L    + ++LVR++ T   +Y+L+L+       +K+     +Y  G
Sbjct: 3   WYHGAISRGDAENLLRLCKECSYLVRNSQTSKHDYSLSLKSNQGFMHMKLAKTKEKYVLG 62

Query: 275 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
            + P  F SV E+I+YY    L          LLYPV
Sbjct: 63  QNSP-PFDSVPEVIHYYTTRKLP-IKGAEHLSLLYPV 97

SHB functions in generating signaling compounds in response to tyrosine kinase activation. SHB contains proline-rich motifs, a phosphotyrosine binding (PTB) domain, tyrosine phosphorylation sites, and a SH2 domain. SHB mediates certain aspects of platelet-derived growth factor (PDGF) receptor-, fibroblast growth factor (FGF) receptor-, neural growth factor (NGF) receptor TRKA-, T cell receptor-, interleukin-2 (IL-2) receptor- and focal adhesion kinase- (FAK) signaling. SRC-like FYN-Related Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB regulate apoptosis, proliferation and differentiation. SHB promotes apoptosis and is also required for proper mitogenicity, spreading and tubular morphogenesis in endothelial cells. SHB also plays a role in preventing early cavitation of embryoid bodies and reduces differentiation to cells expressing albumin, amylase, insulin and glucagon. SHB is a multifunctional protein that has difference responses in different cells under various conditions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198249 cd10386, SH2_SOCS5, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) family

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 425 MSRAQAEALLSGRPDGTFLIRPSTTGQYALSI 456
           M R +AEALL G+P+GTFL+R S    Y  S+
Sbjct: 7   MDRYEAEALLEGKPEGTFLLRDSAQEDYLFSV 38

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|198211 cd10348, SH2_Cterm_shark_like, C-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 216 EWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRY 273
           +W  G + R++  + L     ADG+FLVR +  + G Y LTL         +I +R+ ++
Sbjct: 1   QWLHGALDRNEAVEILKQKADADGSFLVRYSRRRPGGYVLTLVYENHVYHFEIQNRDDKW 60

Query: 274 GFSE--PFKFTSVVELINYY 291
            + +  P+ F S+  LI +Y
Sbjct: 61  FYIDDGPY-FESLEHLIEHY 79

These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in its carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 86

>gnl|CDD|198247 cd10384, SH2_SOCS3, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 41.3 bits (97), Expect = 9e-05
 Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG 271
           L+++ +YW  +S  + N  L+    GTFL+RD+S +   +TL+++     K ++I    G
Sbjct: 7   LQESGFYWSTVSGKEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTESGTKNLRIQCEGG 66

Query: 272 RY-------GFSEPFKFTSVVELINYY 291
            +             +F  V++L+++Y
Sbjct: 67  SFSLQTDPRSTQPVPRFDCVLKLVHHY 93

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198198 cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2 domain found in SH2 domain-containing adapter proteins B, D, E, and F (SHB, SHD, SHE, SHF)

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 18/99 (18%)

Query: 425 MSRAQAEALLSGRPDGTFLIRPSTTGQ--YALSIVCSGAPKHCLVYETERG---FG-FAE 478
           ++R +AE+LL    +G++L+R S + +  Y+LS+  +    H  +   E G    G F+ 
Sbjct: 8   ITRIEAESLLRPCKEGSYLVRNSESTKQDYSLSLKSAKGFMHMRIQRNETGQYILGQFSR 67

Query: 479 PFNIYPSLGALVLHYAANSL----EEHNDDLKTTLAYPV 513
           PF    ++  ++ HY  N L     EH       L  PV
Sbjct: 68  PF---ETIPEMIRHYCLNKLPVRGAEH-----MCLLEPV 98

SHB, SHD, SHE, and SHF are SH2 domain-containing proteins that play various roles throughout the cell. SHB functions in generating signaling compounds in response to tyrosine kinase activation. SHB contains proline-rich motifs, a phosphotyrosine binding (PTB) domain, tyrosine phosphorylation sites, and a SH2 domain. SHB mediates certain aspects of platelet-derived growth factor (PDGF) receptor-, fibroblast growth factor (FGF) receptor-, neural growth factor (NGF) receptor TRKA-, T cell receptor-, interleukin-2 (IL-2) receptor- and focal adhesion kinase- (FAK) signaling. SRC-like FYN-Related Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB regulate apoptosis, proliferation and differentiation. SHB promotes apoptosis and is also required for proper mitogenicity, spreading and tubular morphogenesis in endothelial cells. SHB also plays a role in preventing early cavitation of embryoid bodies and reduces differentiation to cells expressing albumin, amylase, insulin and glucagon. SHB is a multifunctional protein that has difference responses in different cells under various conditions. SHE is expressed in heart, lung, brain, and skeletal muscle, while expression of SHD is restricted to the brain. SHF is mainly expressed in skeletal muscle, brain, liver, prostate, testis, ovary, small intestine, and colon. SHD may be a physiological substrate of c-Abl and may function as an adapter protein in the central nervous system. It is also thought to be involved in apoptotic regulation. SHD contains five YXXP motifs, a substrate sequence preferred by Abl tyrosine kinases, in addition to a poly-proline rich region and a C-terminal SH2 domain. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. SHF contains four putative tyrosine phosphorylation sites and an SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198181 cd09927, SH2_Tensin_like, Src homology 2 domain found in Tensin-like proteins

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 25/89 (28%)

Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAP-----------------KHC 465
           +SR QA ALL  +P GTFL+R STT  G Y L++  +  P                 +H 
Sbjct: 10  ISRDQAIALLKDKPPGTFLVRDSTTYKGAYGLAVKVATPPPGVNPFEAKGDPESELVRHF 69

Query: 466 LVYETERGF---GFA-EPFNIYPSLGALV 490
           L+  + +G    G   EP   + SL ALV
Sbjct: 70  LIEPSPKGVKLKGCPNEPV--FGSLSALV 96

SH2 domain found in Tensin-like proteins. The Tensins are a family of intracellular proteins that interact with receptor tyrosine kinases (RTKs), integrins, and actin. They are thought act as signaling bridges between the extracellular space and the cytoskeleton. There are four homologues: Tensin1, Tensin2 (TENC1, C1-TEN), Tensin3 and Tensin4 (cten), all of which contain a C-terminal tandem SH2-PTB domain pairing, as well as actin-binding regions that may localize them to focal adhesions. The isoforms of Tensin2 and Tensin3 contain N-terminal C1 domains, which are atypical and not expected to bind to phorbol esters. Tensins 1-3 contain a phosphatase (PTPase) and C2 domain pairing which resembles PTEN (phosphatase and tensin homologue deleted on chromosome 10) protein. PTEN is a lipid phosphatase that dephosphorylates phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) to yield phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). As PtdIns(3,4,5)P3 is the product of phosphatidylinositol 3-kinase (PI3K) activity, PTEN is therefore a key negative regulator of the PI3K pathway. Because of their PTEN-like domains, the Tensins may also possess phosphoinositide-binding or phosphatase capabilities. However, only Tensin2 and Tensin3 have the potential to be phosphatases since only their PTPase domains contain a cysteine residue that is essential for catalytic activity. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 116

>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 19/64 (29%), Positives = 31/64 (48%)

Query: 83  LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLA 142
           LK + + L EPL PY  +  FV+ +  S+     S +  L++  P  +   L+ L  HL 
Sbjct: 77  LKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLC 136

Query: 143 RMCA 146
           R+  
Sbjct: 137 RVIE 140

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|198270 cd10407, SH2_Vav3, Src homology 2 (SH2) domain found in the Vav3 proteins

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 340 SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 374
           +E  KF S++EL+ YYKH SL +   +LDT L +P
Sbjct: 66  AENRKFKSLMELVEYYKHHSLKEGFRSLDTTLQFP 100

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav3 preferentially activates RhoA, RhoG and, to a lesser extent, Rac1. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. VAV3 has been shown to interact with Grb2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198185 cd09931, SH2_C-SH2_SHP_like, C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 11/85 (12%)

Query: 425 MSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAP-KHCLVYETERG---FGFA 477
           +S  +AE LL  +   G+FL+R S +  G + LS+        H ++   + G    G  
Sbjct: 7   LSGKEAEKLLLEKGKPGSFLVRESQSKPGDFVLSVRTDDDKVTHIMIR-CQGGKYDVGGG 65

Query: 478 EPFNIYPSLGALVLHYAANSLEEHN 502
           E F+   SL  LV HY  N + E +
Sbjct: 66  EEFD---SLTDLVEHYKKNPMVETS 87

The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [SIVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|199831 cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain found in the Fyn-related kinase (Frk)

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 425 MSRAQAEA--LLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
           + RA AE   L S    G FLIR S +  G+++LS++  G  KH  +   + G  F    
Sbjct: 10  IKRADAEKQLLYSENQTGAFLIRESESQKGEFSLSVLDGGVVKHYRIRRLDEGGFFLTRR 69

Query: 481 NIYPSLGALVLHYAANS 497
             + +L   V +Y   S
Sbjct: 70  KTFSTLNEFVNYYTTTS 86

Frk is a member of the Src non-receptor type tyrosine kinase family of proteins. The Frk subfamily is composed of Frk/Rak and Iyk/Bsk/Gst. It is expressed primarily epithelial cells. Frk is a nuclear protein and may function during G1 and S phase of the cell cycle and suppress growth. Unlike the other Src members it lacks a glycine at position 2 of SH4 which is important for addition of a myristic acid moiety that is involved in targeting Src PTKs to cellular membranes. FRK and SHB exert similar effects when overexpressed in rat phaeochromocytoma (PC12) and beta-cells, where both induce PC12 cell differentiation and beta-cell proliferation. Under conditions that cause beta-cell degeneration these proteins augment beta-cell apoptosis. The FRK-SHB responses involve FAK and insulin receptor substrates (IRS) -1 and -2. Frk has been demonstrated to interact with retinoblastoma protein. Frk regulates PTEN protein stability by phosphorylating PTEN, which in turn prevents PTEN degradation. Frk also plays a role in regulation of embryonal pancreatic beta cell formation. Frk has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its activation loop. The tryosine involved is at the same site as the tyrosine involved in the autophosphorylation of Src. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 96

>gnl|CDD|198207 cd10344, SH2_SLAP, Src homology 2 domain found in Src-like adaptor proteins

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 217 WYWGDISRDDVND--KLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH------ 268
           W +  +SR+   +   L     G+FL+R++ T+ G Y+L++R  G+     + H      
Sbjct: 12  WLFEGLSREKAEELLMLPGNQVGSFLIRESETRRGCYSLSVRHRGSQSRDSVKHYRIFRL 71

Query: 269 RNGRYGFSEPFKFTSVVELINYY 291
            NG +  S    F  + +++N+Y
Sbjct: 72  DNGWFYISPRLTFQCLEDMVNHY 94

SLAP belongs to the subfamily of adapter proteins that negatively regulate cellular signaling initiated by tyrosine kinases. It has a myristylated N-terminus, SH3 and SH2 domains with high homology to Src family tyrosine kinases, and a unique C-terminal tail, which is important for c-Cbl binding. SLAP negatively regulates platelet-derived growth factor (PDGF)-induced mitogenesis in fibroblasts and regulates F-actin assembly for dorsal ruffles formation. c-Cbl mediated SLAP inhibition towards actin remodeling. Moreover, SLAP enhanced PDGF-induced c-Cbl phosphorylation by SFK. In contrast, SLAP mitogenic inhibition was not mediated by c-Cbl, but it rather involved a competitive mechanism with SFK for PDGF-receptor (PDGFR) association and mitogenic signaling. Accordingly, phosphorylation of the Src mitogenic substrates Stat3 and Shc were reduced by SLAP. Thus, we concluded that SLAP regulates PDGFR signaling by two independent mechanisms: a competitive mechanism for PDGF-induced Src mitogenic signaling and a non-competitive mechanism for dorsal ruffles formation mediated by c-Cbl. SLAP is a hematopoietic adaptor containing Src homology (SH)3 and SH2 motifs and a unique carboxy terminus. Unlike c-Src, SLAP lacks a tyrosine kinase domain. Unlike c-Src, SLAP does not impact resorptive function of mature osteoclasts but induces their early apoptosis. SLAP negatively regulates differentiation of osteoclasts and proliferation of their precursors. Conversely, SLAP decreases osteoclast death by inhibiting activation of caspase 3. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198214 cd10351, SH2_SH2D4B, Src homology 2 domain found in the SH2 domain containing protein 4B (SH2D4B)

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 215 AEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYG 274
           A W+ G ISR++    L +  +G+FLVR  S K   YTL+ R     K   +      Y 
Sbjct: 7   APWFHGIISREEAEALLMNATEGSFLVR-VSEKIWGYTLSYRLQSGFKHFLVDASGDFYS 65

Query: 275 F--SEPFKFTSVVELINYYKHE 294
           F   +P +  ++ +LI+++K E
Sbjct: 66  FLGVDPNRHATLTDLIDFHKEE 87

SH2D4B contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198225 cd10362, SH2_Src_Lck, Src homology 2 (SH2) domain in lymphocyte cell kinase (Lck)

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 13/103 (12%)

Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLR-----KGGTNKLIKIFH 268
            W++ ++SR+D   +L    +  G+FL+R++ T  G ++L++R     +G   K  KI +
Sbjct: 4   PWFFKNLSRNDAERQLLAPGNTHGSFLIRESETTAGSFSLSVRDFDQNQGEVVKHYKIRN 63

Query: 269 -RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
             NG +  S    F  + EL+ +Y + S       L TRL  P
Sbjct: 64  LDNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRP 101

Lck is a member of the Src non-receptor type tyrosine kinase family of proteins. It is expressed in the brain, T-cells, and NK cells. The unique domain of Lck mediates its interaction with two T-cell surface molecules, CD4 and CD8. It associates with their cytoplasmic tails on CD4 T helper cells and CD8 cytotoxic T cells to assist signaling from the T cell receptor (TCR) complex. When the T cell receptor is engaged by the specific antigen presented by MHC, Lck phosphorylase the intracellular chains of the CD3 and zeta-chains of the TCR complex, allowing ZAP-70 to bind them. Lck then phosphorylates and activates ZAP-70, which in turn phosphorylates Linker of Activated T cells (LAT), a transmembrane protein that serves as a docking site for proteins including: Shc-Grb2-SOS, PI3K, and phospholipase C (PLC). The tyrosine phosphorylation cascade culminates in the intracellular mobilization of a calcium ions and activation of important signaling cascades within the lymphocyte, including the Ras-MEK-ERK pathway, which goes on to activate certain transcription factors such as NFAT, NF-kappaB, and AP-1. These transcription factors regulate the production cytokines such as Interleukin-2 that promote long-term proliferation and differentiation of the activated lymphocytes. The N-terminal tail of Lck is myristoylated and palmitoylated and it tethers the protein to the plasma membrane of the cell. Lck also contains a SH3 domain, a SH2 domain, and a C-terminal tyrosine kinase domain. Lck has 2 phosphorylation sites, the first an autophosphorylation site that is linked to activation of the protein and the second which is phosphorylated by Csk, which inhibits it. Lck is also inhibited by SHP-1 dephosphorylation and by Cbl ubiquitin ligase, which is part of the ubiquitin-mediated pathway. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198254 cd10391, SH2_SHE, Src homology 2 domain found in SH2 domain-containing adapter protein E (SHE)

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 12/96 (12%)

Query: 425 MSRAQAEALLSGRPDGTFLIRPSTTG--QYALSIVCSGAPKHCLVYET-ERGFGFAEPFN 481
           +SRA+AE+ L    + ++L+R S +G  +Y++++  S    H +V +T +  +   +   
Sbjct: 8   ISRAEAESRLQPCKEASYLVRNSESGNSKYSIALKTSQGCVHIIVAQTKDNKYTLNQTSA 67

Query: 482 IYPSLGALVLHYAANSL----EEHNDDLKTTLAYPV 513
           ++ S+  +V +Y+   L     EH      TL +PV
Sbjct: 68  VFDSIPEVVHYYSNEKLPFKGAEH-----MTLLHPV 98

SHE is expressed in heart, lung, brain, and skeletal muscle. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198181 cd09927, SH2_Tensin_like, Src homology 2 domain found in Tensin-like proteins

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLR 256
           WY  +ISRD     L D   GTFLVRD++T  G Y L ++
Sbjct: 5   WYKPNISRDQAIALLKDKPPGTFLVRDSTTYKGAYGLAVK 44

SH2 domain found in Tensin-like proteins. The Tensins are a family of intracellular proteins that interact with receptor tyrosine kinases (RTKs), integrins, and actin. They are thought act as signaling bridges between the extracellular space and the cytoskeleton. There are four homologues: Tensin1, Tensin2 (TENC1, C1-TEN), Tensin3 and Tensin4 (cten), all of which contain a C-terminal tandem SH2-PTB domain pairing, as well as actin-binding regions that may localize them to focal adhesions. The isoforms of Tensin2 and Tensin3 contain N-terminal C1 domains, which are atypical and not expected to bind to phorbol esters. Tensins 1-3 contain a phosphatase (PTPase) and C2 domain pairing which resembles PTEN (phosphatase and tensin homologue deleted on chromosome 10) protein. PTEN is a lipid phosphatase that dephosphorylates phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) to yield phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). As PtdIns(3,4,5)P3 is the product of phosphatidylinositol 3-kinase (PI3K) activity, PTEN is therefore a key negative regulator of the PI3K pathway. Because of their PTEN-like domains, the Tensins may also possess phosphoinositide-binding or phosphatase capabilities. However, only Tensin2 and Tensin3 have the potential to be phosphatases since only their PTPase domains contain a cysteine residue that is essential for catalytic activity. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 116

>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 10/125 (8%)

Query: 49  PGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLS 108
            G  S+V EL  AY+   +S N  + EP  +A +LK YL+ L EPL+      +F     
Sbjct: 45  SGIKSKVDELKAAYNRR-ESPNLEEYEPPTVASLLKQYLRELPEPLLTKELMPRFEEACG 103

Query: 109 GSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTIL-IQSFTFV 167
              +      L  L+++ P  +   L +L+ H+  + A       +E  T + IQ+ + V
Sbjct: 104 RPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIA-------QELETKMNIQNISIV 156

Query: 168 L-PTF 171
           L PT 
Sbjct: 157 LSPTV 161

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 182

>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 80  AIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMA 139
           A +LK Y + L  PL P   +E  +S +   N      ++  ++   P      +RYL A
Sbjct: 76  AGVLKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFA 135

Query: 140 HLARMCALQYA 150
            L  +   Q++
Sbjct: 136 FLNHLS--QFS 144

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 188

>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 21/72 (29%), Positives = 30/72 (41%)

Query: 72  SKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHF 131
           S   P  +A +LK + + L EPL+PY  +E  +       D    S    L    P  H 
Sbjct: 65  SSALPCDVAGLLKQFFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHV 124

Query: 132 SALRYLMAHLAR 143
           + LRY  + L  
Sbjct: 125 NTLRYFFSFLYD 136

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 202

>gnl|CDD|198200 cd10337, SH2_BCAR3, Src homology 2 (SH2) domain in the Breast Cancer Anti-estrogen Resistance protein 3

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 16/91 (17%)

Query: 212 LRDAEWYWGDISRDDVNDKLADT---ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF- 267
           LR   WY G I R     ++A++    +G FLVRD+ +  G+Y LT R  G     KI  
Sbjct: 3   LRSHAWYHGRIPR-----QVAESLVQREGDFLVRDSLSSPGDYVLTCRWKGQPLHFKINR 57

Query: 268 -HRNGRYGFS------EPFKFTSVVELINYY 291
                   ++      E  +F S+  L+++Y
Sbjct: 58  VVLRPSEAYTRVQYQFEDEQFDSIPALVHFY 88

BCAR3 is part of a growing family of guanine nucleotide exchange factors is responsible for activation of Ras-family GTPases, including Sos1 and 2, GRF1 and 2, CalDAG-GEF/GRP1-4, C3G, cAMP-GEF/Epac 1 and 2, PDZ-GEFs, MR-GEF, RalGDS family members, RalGPS, RasGEF, Smg GDS, and phospholipase C(epsilon). 12102558 21262352 BCAR3 binds to the carboxy-terminus of BCAR1/p130Cas, a focal adhesion adapter protein. Over expression of BCAR1 (p130Cas) and BCAR3 induces estrogen independent growth in normally estrogen-dependent cell lines. They have been linked to resistance to anti-estrogens in breast cancer, Rac activation, and cell motility, though the BCAR3/p130Cas complex is not required for this activity in BCAR3. Many BCAR3-mediated signaling events in epithelial and mesenchymal cells are independent of p130Cas association. Structurally these proteins contain a single SH2 domain upstream of their RasGEF domain, which is responsible for the ability of BCAR3 to enhance p130Cas over-expression-induced migration. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 136

>gnl|CDD|198220 cd10357, SH2_ShkD_ShkE, Src homology 2 (SH2) domain found in SH2 domain-bearing protein kinases D and E (ShkD and ShkE)

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 416 SGEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTT 449
             +  +   +SR +AE  L GRP+GTFLIR S+T
Sbjct: 8   LAKSWFHGDISRDEAEKRLRGRPEGTFLIRLSST 41

SH2-bearing genes cloned from Dictyostelium include two transcription factors, STATa and STATc, and a signaling factor, SHK1 (shkA). A database search of the Dictyostelium discoideum genome revealed two additional putative STAT sequences, dd-STATb and dd-STATd, and four additional putative SHK genes, dd-SHK2 (shkB), dd-SHK3 (shkC), dd-SHK4 (shkD), and dd-SHK5 (shkE). This model contains members of shkD and shkE. All of the SHK members are most closely related to the protein kinases found in plants. However these kinases in plants are not conjugated to any SH2 or SH2-like sequences. Alignment data indicates that the SHK SH2 domains carry some features of the STAT SH2 domains in Dictyostelium. When STATc's linker domain was used for a BLAST search, the sequence between the protein kinase domain and the SH2 domain (the linker) of SHK was recovered, suggesting a close relationship among these molecules within this region. SHK's linker domain is predicted to contain an alpha-helix which is indeed homologous to that of STAT. Based on the phylogenetic alignment, SH2 domains can be grouped into two categories, STAT-type and Src-type. SHK family members are in between, but are closer to the STAT-type which indicates a close relationship between SHK and STAT families in their SH2 domains and further supports the notion that SHKs linker-SH2 domain evolved from STAT or STATL (STAT-like Linker-SH2) domain found in plants. In SHK, STAT, and SPT6, the linker-SH2 domains all reside exclusively in the C-terminal regions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 87

>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 83  LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLA 142
           LK +L+SL EPLI +  +++F+      ++ +  + L+  + + P  +   L +L+ HL 
Sbjct: 76  LKDFLRSLKEPLITFALWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQ 135

Query: 143 R 143
           R
Sbjct: 136 R 136

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 193

>gnl|CDD|198255 cd10392, SH2_SHF, Src homology 2 domain found in SH2 domain-containing adapter protein F (SHF)

 Score = 38.5 bits (89), Expect = 7e-04
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 5/98 (5%)

Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRY-- 273
           WY G ISR D  + L    + ++LVR++ T   +++L+L+       +K+   +  +Y  
Sbjct: 3   WYHGAISRTDAENLLRLCKEASYLVRNSETSKNDFSLSLKSSQGFMHMKLSRTKEHKYVL 62

Query: 274 GFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
           G + P  F+SV E+I++Y    L          LLYPV
Sbjct: 63  GQNSP-PFSSVPEIIHHYASRKLP-IKGAEHMSLLYPV 98

SHF is thought to play a role in PDGF-receptor signaling and regulation of apoptosis. SHF is mainly expressed in skeletal muscle, brain, liver, prostate, testis, ovary, small intestine, and colon. SHF contains four putative tyrosine phosphorylation sites and an SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198196 cd09943, SH2_Nck_family, Src homology 2 (SH2) domain found in the Nck family

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 424 RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
           R++R QAE LL+    +G FLIR S +  G Y++S+   G  KH  V   +  +   +  
Sbjct: 7   RITRHQAETLLNEHGHEGDFLIRDSESNPGDYSVSLKAPGRNKHFKVQVVDNVYCIGQ-- 64

Query: 481 NIYPSLGALVLHYAA 495
             + ++  LV HY  
Sbjct: 65  RKFHTMDELVEHYKK 79

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 93

>gnl|CDD|199832 cd10417, SH2_SH2D7, Src homology 2 domain found in the SH2 domain containing protein 7 (SH2D7)

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGF 275
           W+ G I+R      L D A G+FL+R +    G Y L+ R     +   I   RN RY  
Sbjct: 9   WFHGFITRKQTEQLLRDKALGSFLIRLSDRATG-YILSYRGSDRCRHFVINQLRNRRYLI 67

Query: 276 S-EPFKFTSVVELINYYKHESLSQYNSTLDT 305
           S +    +++ EL+ +Y+   L  +  TL  
Sbjct: 68  SGDTSSHSTLAELVRHYQEVQLEPFGETLTA 98

SH2D7 contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 49  PGNASQVAELFHAYSGEIKSYNFSKLE-PALLAIMLKTYLKSLTEPLIPYVYYEKFVSLL 107
           PG+  +V EL          Y  S LE P + A +LK +L+ L EPLIP   Y++    +
Sbjct: 47  PGDIDEVNELKLRVDQ--WDYPLSGLEDPHVPASLLKLWLRELEEPLIPDALYQQ---CI 101

Query: 108 SGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQ 148
           S S D     +   +VQ  P  +   L YL+ +  ++ A  
Sbjct: 102 SASEDP---DKAVEIVQKLPIINRLVLCYLI-NFLQVFAQP 138

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|198223 cd10360, SH2_Srm, Src homology 2 (SH2) domain found in Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristoylation sites (srm)

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 425 MSRAQAEALLSGRPD--GTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
           +SR QA+ LL   P+  G FLIRPS +  G Y+LS+       H  +     G  + +  
Sbjct: 7   ISRTQAQQLLLSPPNEPGAFLIRPSESSLGGYSLSVRAQAKVCHYRICMAPSGSLYLQKG 66

Query: 481 NIYPSLGALVLHY 493
            ++P L  L+ +Y
Sbjct: 67  RLFPGLEELLAYY 79

Srm is a nonreceptor protein kinase that has two SH2 domains, a SH3 domain, and a kinase domain with a tyrosine residue for autophosphorylation. However it lacks an N-terminal glycine for myristoylation and a C-terminal tyrosine which suppresses kinase activity when phosphorylated. Srm is most similar to members of the Tec family who other members include: Tec, Btk/Emb, and Itk/Tsk/Emt. However Srm differs in its N-terminal unique domain it being much smaller than in the Tec family and is closer to Src. Srm is thought to be a new family of nonreceptor tyrosine kinases that may be redundant in function. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 79

>gnl|CDD|198188 cd09934, SH2_Tec_family, Src homology 2 (SH2) domain found in Tec-like proteins

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 14/101 (13%)

Query: 421 WLVR-MSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIV--CSGAP--KHCLVYETERG 473
           W V  MSR +AE+LL     +G F++R S+T G Y +S+     G+P  KH  + +  R 
Sbjct: 8   WYVGDMSRQRAESLLKQEDKEGCFVVRNSSTKGLYTVSLFTKVPGSPHVKHYHIKQNARS 67

Query: 474 -FGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            F  AE    + ++  L+ ++  NS       L T L YPV
Sbjct: 68  EFYLAEKH-CFETIPELINYHQHNS-----GGLATRLKYPV 102

The Tec protein tyrosine kinase is the founding member of a family that includes Btk, Itk, Bmx, and Txk. The members have a PH domain, a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is involved in B-cell receptor signaling with mutations in Btk responsible for X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency (xid) in mice. Itk is involved in T-cell receptor signaling. Tec is expressed in both T and B cells, and is thought to function in activated and effector T lymphocytes to induce the expression of genes regulated by NFAT transcription factors. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198224 cd10361, SH2_Fps_family, Src homology 2 (SH2) domain found in feline sarcoma, Fujinami poultry sarcoma, and fes-related (Fes/Fps/Fer) proteins

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 425 MSRAQAEALLSGRPDGTFLIR-----PSTTGQYALSIVCSGAPKHCLVYETE-RGFGFAE 478
           + R  AE LL  + DG FL+R          +  LS+   G  +H ++   +   +    
Sbjct: 13  LPREDAEELL--KNDGDFLVRKTEPKGGGKRKLVLSVRWDGKIRHFVINRDDGGKYYIEG 70

Query: 479 PFNIYPSLGALVLHYAANSLE 499
               + S+  L+ +Y      
Sbjct: 71  KS--FKSISELINYYQKTKEP 89

The Fps family consists of members Fps/Fes and Fer/Flk/Tyk3. They are cytoplasmic protein-tyrosine kinases implicated in signaling downstream from cytokines, growth factors and immune receptors. Fes/Fps/Fer contains three coiled-coil regions, an SH2 (Src-homology-2) and a TK (tyrosine kinase catalytic) domain signature. Members here include: Fps/Fes, Fer, Kin-31, and In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 90

>gnl|CDD|199828 cd09941, SH2_Grb2_like, Src homology 2 domain found in Growth factor receptor-bound protein 2 (Grb2) and similar proteins

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 8/79 (10%)

Query: 424 RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERG--FGFAE 478
           ++SRA+AE +L   RPDG FLIR S  + G ++LS+      +H  V     G  F +  
Sbjct: 9   KISRAEAEEILMNQRPDGAFLIRESESSPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 68

Query: 479 PFNIYPSLGALVLHYAANS 497
            FN   SL  LV ++   S
Sbjct: 69  KFN---SLNELVDYHRTTS 84

The adaptor proteins here include homologs Grb2 in humans, Sex muscle abnormal protein 5 (Sem-5) in Caenorhabditis elegans, and Downstream of receptor kinase (drk) in Drosophila melanogaster. They are composed of one SH2 and two SH3 domains. Grb2/Sem-5/drk regulates the Ras pathway by linking the tyrosine kinases to the Ras guanine nucleotide releasing protein Sos, which converts Ras to the active GTP-bound state. The SH2 domain of Grb2/Sem-5/drk binds class II phosphotyrosyl peptides while its SH3 domain binds to Sos and Sos-derived, proline-rich peptides. Besides it function in Ras signaling, Grb2 is also thought to play a role in apoptosis. Unlike most SH2 structures in which the peptide binds in an extended conformation (such that the +3 peptide residue occupies a hydrophobic pocket in the protein, conferring a modest degree of selectivity), Grb2 forms several hydrogen bonds via main chain atoms with the side chain of +2 Asn. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 95

>gnl|CDD|198251 cd10388, SH2_SOCS7, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 425 MSRAQAEALLSGRPDGTFLIRPSTTGQYALSI 456
           MS   AE +LS +PDG+FL+R S+  +Y  S+
Sbjct: 17  MSWEDAEKVLSNKPDGSFLVRDSSDDRYIFSL 48

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198278 cd10415, SH2_Grb10, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 10 (Grb10) proteins

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 213 RDAEWYWGDISRDDVNDKLADTA--DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI--FH 268
           R   W+ G ISR++ +  +      DG FL+RD+ +    + LTL      K  +I    
Sbjct: 3   RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62

Query: 269 RNGRYGFS---EPFKFTSVVELINYYK 292
            +G+  FS      KF+ +++L+++Y+
Sbjct: 63  DDGQTFFSLDDGNTKFSDLIQLVDFYQ 89

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb10 is part of the Grb7 family of proteins which also includes Grb7, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb10 has been shown to interact with many different proteins, including the insulin and IGF1 receptors, platelet-derived growth factor (PDGF) receptor-beta, Ret, Kit, Raf1 and MEK1, and Nedd4. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198208 cd10345, SH2_C-SH2_Zap70_Syk_like, C-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70) and Spleen tyrosine kinase (Syk) proteins

 Score = 36.6 bits (84), Expect = 0.004
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 14/84 (16%)

Query: 217 WYWGDISRDDVNDKLADTA--DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH------ 268
           W+ G ISR++    +   +  +G FL+R     NG Y L L   G      + H      
Sbjct: 2   WFHGKISREESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGK-----VLHYRIDKD 55

Query: 269 RNGRYGFSEPFKFTSVVELINYYK 292
           + G+    E  KF ++ +L+ +Y 
Sbjct: 56  KTGKLSIPEGKKFDTLWQLVEHYS 79

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of both Syk and Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	523
KOG4637|consensus	464		100.0
cd04388	200	RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr	100.0
KOG1264|consensus	1267		100.0
cd04383	188	RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato	100.0
cd04372	194	RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-	100.0
cd04387	196	RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr	100.0
cd04407	186	RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas	100.0
cd04406	186	RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas	100.0
cd04382	193	RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-	100.0
cd04408	200	RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator	100.0
cd04403	187	RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G	99.98
cd04384	195	RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato	99.98
cd04381	182	RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa	99.98
cd04378	203	RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas	99.97
cd04375	220	RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator	99.97
cd04409	211	RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato	99.97
cd04379	207	RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator	99.97
cd04373	185	RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator	99.97
cd04402	192	RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac	99.97
cd04376	206	RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti	99.97
cd04396	225	RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas	99.97
cd04385	184	RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator	99.97
cd04390	199	RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas	99.97
cd04391	216	RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac	99.97
cd04377	186	RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-	99.97
cd04397	213	RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato	99.97
cd04386	203	RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa	99.97
cd04398	192	RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato	99.97
cd04374	203	RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein	99.96
cd04395	196	RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac	99.96
cd04394	202	RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-	99.96
cd04393	189	RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac	99.96
cd04400	190	RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato	99.96
KOG0790|consensus	600		99.96
cd04392	208	RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac	99.96
cd04404	195	RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-	99.96
cd04399	212	RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato	99.96
cd04389	187	RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator	99.95
cd04380	220	RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato	99.94
smart00324	174	RhoGAP GTPase-activator protein for Rho-like GTPas	99.94
KOG4269|consensus	1112		99.92
KOG2200|consensus	674		99.92
cd00159	169	RhoGAP RhoGAP: GTPase-activator protein (GAP) for	99.92
PF00620	151	RhoGAP: RhoGAP domain; InterPro: IPR000198 Members	99.92
KOG4270|consensus	577		99.91
KOG4407|consensus	1973		99.9
KOG3564|consensus	604		99.9
KOG1450|consensus	650		99.89
KOG2710|consensus	412		99.89
KOG4278|consensus	1157		99.88
KOG1117|consensus	1186		99.87
KOG2996|consensus	865		99.85
KOG1451|consensus	812		99.85
KOG4406|consensus	467		99.84
KOG1453|consensus	918		99.83
cd00173	94	SH2 Src homology 2 domains; Signal transduction, i	99.83
smart00252	84	SH2 Src homology 2 domains. Src homology 2 domains	99.82
KOG0197|consensus	468		99.81
cd00173	94	SH2 Src homology 2 domains; Signal transduction, i	99.79
PF00017	77	SH2: SH2 domain; InterPro: IPR000980 The Src homol	99.79
KOG4792|consensus	293		99.77
KOG4278|consensus	1157		99.75
KOG0197|consensus	468		99.74
KOG0194|consensus	474		99.74
smart00252	84	SH2 Src homology 2 domains. Src homology 2 domains	99.74
KOG4226|consensus	379		99.73
PF00017	77	SH2: SH2 domain; InterPro: IPR000980 The Src homol	99.71
KOG2996|consensus	865		99.68
KOG0790|consensus	600		99.66
KOG1452|consensus	442		99.66
KOG4226|consensus	379		99.66
KOG4271|consensus	1100		99.62
KOG4637|consensus	464		99.57
KOG1264|consensus	1267		99.54
cd04401	198	RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato	99.49
KOG4792|consensus	293		99.34
cd04405	235	RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas	99.28
KOG4724|consensus	741		99.28
KOG4370|consensus	514		99.27
KOG3601|consensus	222		99.19
KOG3601|consensus	222		99.1
KOG1930|consensus	483		99.02
KOG0194|consensus	474		98.95
KOG1930|consensus	483		98.9
PF14633	220	SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_	98.76
KOG3565|consensus	640		98.75
KOG3697|consensus	345		98.34
KOG1856|consensus	1299		98.12
KOG3751|consensus	622		98.09
KOG3697|consensus	345		97.95
KOG3751|consensus	622		97.91
PF08101	420	DUF1708: Domain of unknown function (DUF1708); Int	97.9
PF14633	220	SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_	97.17
KOG4566|consensus	258		97.15
KOG4724|consensus	741		96.84
KOG4566|consensus	258		95.31
KOG1856|consensus	1299		93.16
KOG1453|consensus	918		91.35
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	87.47
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	85.16
KOG4257|consensus	974		84.56
KOG3508|consensus	932		82.76

>KOG4637|consensus

Probab=100.00  E-value=1.5e-45  Score=352.44  Aligned_cols=306  Identities=48%  Similarity=0.804  Sum_probs=243.6

Q ss_pred             CCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHH
Q psy8552         210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELIN  289 (523)
Q Consensus       210 ~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~  289 (523)
                      .++...+||||.|||+++.+.|.++|||+||||+.++.+|+|+||++.+|.++-++|.+.+|+|.|.+.-.|+|+.+||+
T Consensus        18 ~~L~~a~WYWgdisReev~~~L~d~PDGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgKyGF~d~ltf~SVVelIn   97 (464)
T KOG4637|consen   18 DELQDAEWYWGDISREEVNKKLRDQPDGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGKYGFSDPLTFNSVVELIN   97 (464)
T ss_pred             hhhhhccccccccCHHHHHHHhcCCCCCcEEeeccccCCCceEEEEecCCccceeeeEEecCccCCCCchhhHHHHHHHH
Confidence            44888999999999999999999999999999999888999999999999999999999999999999999999999999


Q ss_pred             HHhhCCcccCCCCcceeeccccccCCCCcccccCCC-CcCC--CC-------Cccccccc---ccCccc-----------
Q psy8552         290 YYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSN-DVDK--NP-------APGVLRTF---SEPFKF-----------  345 (523)
Q Consensus       290 ~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~-~~~~--~~-------l~~~~~~~---~~~~~~-----------  345 (523)
                      ||+..++..+|+.|.++|.+|+.+.+.++..  .++ ++..  |.       +.....+|   .+.|+.           
T Consensus        98 ~yr~~SL~~yN~~LDvrLlyPVs~~r~dq~~--kp~~~~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~  175 (464)
T KOG4637|consen   98 HYRNESLAQYNPKLDVRLLYPVSRYRQDQNV--KPDFNINAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTA  175 (464)
T ss_pred             HHhhhHHHhhCcccceeeechHHHhhhcccc--CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998888765  233 2221  11       22233333   233333           


Q ss_pred             -hhHHHHHHhhc------------------------------------------------cc---chhh------hh---
Q psy8552         346 -TSVVELINYYK------------------------------------------------HE---SLSQ------YN---  364 (523)
Q Consensus       346 -~~~~~avk~~~------------------------------------------------~~---~l~~------~~---  364 (523)
                       ++|...||.++                                                ++   .+++      ++   
T Consensus       176 ~~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg~~e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~~q~~~~  255 (464)
T KOG4637|consen  176 IEAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQGNSEKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKALIQALRS  255 (464)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCchHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence             23333344333                                                00   1111      11   


Q ss_pred             ------hh---hchhcccccccccccc--ccccccchhHHHhhhh------hc--cccccccc-----CCCCCCCCCCCc
Q psy8552         365 ------ST---LDTRLLYPVSRFSSDV--DADIHSNDVDKYINLK------IA--FTNLSGAV-----ASTVDFESGEKT  420 (523)
Q Consensus       365 ------~e---~~ar~m~~l~~~~~~l--~k~~~~~w~~~r~~~~------~~--~g~~p~~~-----~~~~~~~~~~~~  420 (523)
                            .|   +| +.|..+.|+++++  +++++.+|.......+      ..  ....++++     ....| ......
T Consensus       256 ~~enr~~e~m~l~-k~~nslkp~l~~lr~~~d~y~~~l~~~~~~~k~l~~~l~~~~~~t~~qy~l~et~~~~p-h~~e~~  333 (464)
T KOG4637|consen  256 NSENRLCELMELD-KAMNSLKPDLIQLRKIRDQYLVWLMIKGVRQKVLNLWLGMENEWTDAQYLLCETDENLP-HNDEKT  333 (464)
T ss_pred             hhhhhhHHHHHHH-HHHhhcCchHHHHHHHHHHHHHHHHhcCccHHHHHHHHhhhhcCCHHHHHHhcccccCc-chhhhH
Confidence                  12   44 6677778888888  6888888887332222      11  12333333     33445 556668


Q ss_pred             ccc-cCCHHHHHHHhcCCCCCeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCc
Q psy8552         421 WLV-RMSRAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSL  498 (523)
Q Consensus       421 W~~-~isr~~Ae~~L~~~~~G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l  498 (523)
                      |+. .+.|+.||.+|++++||+||||.|. .|+|+|||..++.|+|+.|..+..||.|......+.||.+||.||+++||
T Consensus       334 w~~~~a~r~kAe~llrg~~dGtFLIR~ss~~g~yalSV~~~~~V~HClIy~tatG~GFa~pyn~y~tlk~lV~hY~h~SL  413 (464)
T KOG4637|consen  334 WRVRDANRDKAEELLRGKPDGTFLIRESSKGGCYALSVVHDGEVKHCLIYQTATGFGFAEPYNLYSTLKELVLHYQHTSL  413 (464)
T ss_pred             hHHhhhhHHHHHHHhcCCCCCeEEEeeccCCCceEEEEEECCceeeeEEeeccccccccchhHHHHHHHHHHHHHhhhhH
Confidence            999 9999999999999999999999988 99999999999999999999999999999888889999999999999999


Q ss_pred             cccCCccceeecccccCCCCC
Q psy8552         499 EEHNDDLKTTLAYPVFAPASG  519 (523)
Q Consensus       499 ~~~~~~l~~~L~~pv~~~~~~  519 (523)
                      .+|+|.+.++|++||..+.++
T Consensus       414 e~HnDal~ttLr~Pv~~~~~~  434 (464)
T KOG4637|consen  414 EQHNDALTTTLRYPVFAQVTS  434 (464)
T ss_pred             HhhccccccccccceecccCC
Confidence            999999999999999887554

>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

Probab=100.00  E-value=1.7e-33  Score=261.07  Aligned_cols=149  Identities=24%  Similarity=0.374  Sum_probs=135.4

Q ss_pred             CCCCCHHHHHHHHHHhccCCCCCCCccceEEecCChhHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCC
Q psy8552          17 STTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIP   96 (523)
Q Consensus        17 ~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~flr~LpePli~   96 (523)
                      .+.+|.+|.+||++|+++     ||++|||||++|+..+.++++.||++...++++.+|+|+||++||.|||+|||||||
T Consensus        12 ~~~~P~iv~~ci~~IE~~-----GL~~eGIYRvsgs~~~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPePLip   86 (200)
T cd04388          12 PDVAPPLLIKLVEAIEKK-----GLESSTLYRTQSSSSLTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNPVIP   86 (200)
T ss_pred             CCCCCHHHHHHHHHHHHh-----CCCCCceeeCCCccHHHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCccCC
Confidence            488999999999999999     999999999997767899999999976667888999999999999999999999999


Q ss_pred             hhhHHHHHHHhc-CCChHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccccccCCC
Q psy8552          97 YVYYEKFVSLLS-GSNDRHIGSRLFALVQ--DFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSS  173 (523)
Q Consensus        97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~--~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~~~~  173 (523)
                      +++|++|+++++ ..+.++++++++.+++  .||..|+.||+|||.||.+|++++..|+|+..  ++|.+||   |++++
T Consensus        87 ~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~--NLAiVFg---PtL~r  161 (200)
T cd04388          87 APVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSAR--ALAEIFS---PLLFR  161 (200)
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHH--HhHHHhh---hhhcC
Confidence            999999999886 6678889999999998  89999999999999999999999999888766  8888886   66665


Q ss_pred             CC
Q psy8552         174 PP  175 (523)
Q Consensus       174 pp  175 (523)
                      ++
T Consensus       162 ~~  163 (200)
T cd04388         162 FQ  163 (200)
T ss_pred             CC
Confidence            54

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p

>KOG1264|consensus

Probab=100.00  E-value=9.3e-33  Score=286.36  Aligned_cols=196  Identities=33%  Similarity=0.576  Sum_probs=170.1

Q ss_pred             CCCCCccccCCC-HHHHHHHhcC------CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE--eCC--eEEeCCCCc
Q psy8552         212 LRDAEWYWGDIS-RDDVNDKLAD------TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH--RNG--RYGFSEPFK  280 (523)
Q Consensus       212 l~~~~wyhg~is-r~~Ae~lL~~------~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~--~~~--~~~~~~~~~  280 (523)
                      +-.+.||||.+- |.+|+.+|++      .+||+||||+|++-.|+|+||++..|+|+|.||..  .+|  +|++.++.+
T Consensus       531 H~~E~WFHgkle~R~eAekll~eycke~G~~dGtFlVReS~tFvgDytLSfwr~grv~HcRIrsk~e~gt~Kyyl~dN~v  610 (1267)
T KOG1264|consen  531 HFGEKWFHGKLEGRTEAEKLLQEYCKETGGKDGTFLVRESETFVGDYTLSFWRSGRVQHCRIRSKMEGGTLKYYLTDNLV  610 (1267)
T ss_pred             ccchhhhhcccccchHHHHHHHHHHHHhCCCCccEEEeeccccccceeeeeeECCceeeEEEEeeecCCceeEEEecchh
Confidence            345789999998 9999999974      47999999999999999999999999999999985  444  699999999


Q ss_pred             cCCHHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhhcccch
Q psy8552         281 FTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESL  360 (523)
Q Consensus       281 F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~~~~~l  360 (523)
                      |+||.+||.||+.+.+..  ......|+.||+.                                               
T Consensus       611 fdslY~LI~~Y~~~~Lr~--aeF~m~LtePvPq-----------------------------------------------  641 (1267)
T KOG1264|consen  611 FDSLYALIQHYRETHLRC--AEFEMRLTEPVPQ-----------------------------------------------  641 (1267)
T ss_pred             HHHHHHHHHHHHhccccc--cceEEEecCCCCC-----------------------------------------------
Confidence            999999999999998753  2345566666653                                               


Q ss_pred             hhhhhhhchhccccccccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCCC-
Q psy8552         361 SQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGRP-  438 (523)
Q Consensus       361 ~~~~~e~~ar~m~~l~~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~~-  438 (523)
                                                                        +.  .|++++||| .++|.+||++|+.-+ 
T Consensus       642 --------------------------------------------------p~--~He~k~W~~as~treqAE~mL~rvp~  669 (1267)
T KOG1264|consen  642 --------------------------------------------------PN--PHESKPWYHASLTREQAEDMLMRVPR  669 (1267)
T ss_pred             --------------------------------------------------CC--cccCCccccccccHHHHHHHHhhCcc
Confidence                                                              22  388999999 999999999998765 


Q ss_pred             CCeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccC
Q psy8552         439 DGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       439 ~G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      ||+||||.++ .+.|+||++.+|+++||+|.+++..+.++..  .|.||.+||+||.+++++.     .++|++||+.
T Consensus       670 DGaFLiR~~~~~nsy~iSfr~~gkikHcRi~rdGr~fvl~t~--~FesLv~lv~yY~k~~lyR-----~mkLr~PVne  740 (1267)
T KOG1264|consen  670 DGAFLIRKREGSNSYAISFRARGKIKHCRINRDGRHFVLGTS--AFESLVELVSYYEKHPLYR-----KMKLRYPVNE  740 (1267)
T ss_pred             CcceEEEeccCCceEEEEEEEcCcEeEEEEccCceEEEeccH--HHHHHHHHHHHHhcChhhh-----cccccCcCCH
Confidence            8999999777 9999999999999999999998876766554  6999999999999999886     8899999963

>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

Probab=100.00  E-value=1.8e-32  Score=255.21  Aligned_cols=161  Identities=19%  Similarity=0.287  Sum_probs=143.9

Q ss_pred             CCCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCC--CCCCCCHHHHHH
Q psy8552           5 APNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSY--NFSKLEPALLAI   81 (523)
Q Consensus         5 ~p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~--~~~~~d~~~va~   81 (523)
                      .+.+|...+..++..||.+|.+|++||+++     |+++|||||++|+ .+++++++.||+|....  +.+..|+|+||+
T Consensus         3 FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~-----gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~   77 (188)
T cd04383           3 FNGSLEEYIQDSGQAIPLVVESCIRFINLY-----GLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAG   77 (188)
T ss_pred             CCccHHHHHHHCCCCCChHHHHHHHHHHHc-----CCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHH
Confidence            356788888888999999999999999999     8999999999955 99999999999987421  234679999999


Q ss_pred             HHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchh
Q psy8552          82 MLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILI  161 (523)
Q Consensus        82 lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~  161 (523)
                      +||.|||+||+||||.++|+.|+++.+..+..+++.+++.++.+||+.|+.+|+||+.||.+|+++++.|+|+..  ++|
T Consensus        78 lLK~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLA  155 (188)
T cd04383          78 VLKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPY--NLA  155 (188)
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcc--cce
Confidence            999999999999999999999999999888899999999999999999999999999999999999999988776  777


Q ss_pred             hhhccccccCCCCC
Q psy8552         162 QSFTFVLPTFSSPP  175 (523)
Q Consensus       162 ~~~~~v~P~~~~pp  175 (523)
                      .+|+   |++...|
T Consensus       156 ivf~---P~L~~~p  166 (188)
T cd04383         156 ICFG---PTLMPVP  166 (188)
T ss_pred             eeee---ccccCCC
Confidence            7776   6776553

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group

>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

Probab=100.00  E-value=1.6e-32  Score=257.34  Aligned_cols=160  Identities=24%  Similarity=0.337  Sum_probs=143.1

Q ss_pred             CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCC---CCHHHHHH
Q psy8552           6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSK---LEPALLAI   81 (523)
Q Consensus         6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~---~d~~~va~   81 (523)
                      +-+|...+.+++..||.+|.+|++||+++     |+++|||||++|+ .+|+++++.||++....+++.   .|+|+||+
T Consensus         2 G~~L~~~~~~~~~~iP~iv~~ci~~l~~~-----gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~   76 (194)
T cd04372           2 GCDLTTLVKAHNTQRPMVVDMCIREIEAR-----GLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITG   76 (194)
T ss_pred             CCChHHHHHHcCCCCChHHHHHHHHHHHc-----CCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHH
Confidence            45788888888889999999999999999     8999999999955 999999999998644345542   38999999


Q ss_pred             HHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchh
Q psy8552          82 MLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILI  161 (523)
Q Consensus        82 lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~  161 (523)
                      +||.|||+||+||||+++|+.|+++.+..+.++++++++.++..||+.|+.+|+||+.||++|+++++.|+|+..  ++|
T Consensus        77 lLK~flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~--NLa  154 (194)
T cd04372          77 ALKLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAE--NLG  154 (194)
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHH--HHH
Confidence            999999999999999999999999999888999999999999999999999999999999999999998887765  778


Q ss_pred             hhhccccccCCCCC
Q psy8552         162 QSFTFVLPTFSSPP  175 (523)
Q Consensus       162 ~~~~~v~P~~~~pp  175 (523)
                      .+|+   |++..+|
T Consensus       155 ivf~---P~Ll~~~  165 (194)
T cd04372         155 IVFG---PTLMRPP  165 (194)
T ss_pred             HHHh---cccCCCC
Confidence            8886   7777765

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT

>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

Probab=100.00  E-value=1.8e-32  Score=256.32  Aligned_cols=160  Identities=19%  Similarity=0.309  Sum_probs=143.7

Q ss_pred             CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCC--CCCCCCCHHHHHHH
Q psy8552           6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKS--YNFSKLEPALLAIM   82 (523)
Q Consensus         6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~--~~~~~~d~~~va~l   82 (523)
                      +-+|...+.+++..||.+|.+|++||+++     |+++|||||++|+ .++++|++.+|++...  .+++..|+|+||++
T Consensus         2 Gv~L~~~~~r~~~~IP~iv~~ci~~l~~~-----gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~l   76 (196)
T cd04387           2 GVKISTVTKRERSKVPYIVRQCVEEVERR-----GMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGT   76 (196)
T ss_pred             CCCHHHHHHhcCCCCChHHHHHHHHHHHh-----CCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHH
Confidence            44677778889999999999999999999     8999999999955 9999999999997532  34567899999999


Q ss_pred             HHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhh
Q psy8552          83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQ  162 (523)
Q Consensus        83 LK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~  162 (523)
                      ||.|||+||+||||+++|+.|+++.+..+..+++.+++.++.+||+.|+.+|+||+.||.+|+++++.|+|+..  ++|.
T Consensus        77 LK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLAi  154 (196)
T cd04387          77 LKLYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLH--NLAT  154 (196)
T ss_pred             HHHHHHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHH--HHHH
Confidence            99999999999999999999999999888999999999999999999999999999999999999998887765  7778


Q ss_pred             hhccccccCCCCC
Q psy8552         163 SFTFVLPTFSSPP  175 (523)
Q Consensus       163 ~~~~v~P~~~~pp  175 (523)
                      +|+   |++..|+
T Consensus       155 vf~---P~Llr~~  164 (196)
T cd04387         155 VFG---PTLLRPS  164 (196)
T ss_pred             HHc---cccCCCC
Confidence            886   7777665

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch

>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

Probab=100.00  E-value=2.5e-32  Score=253.63  Aligned_cols=156  Identities=17%  Similarity=0.343  Sum_probs=140.1

Q ss_pred             cccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8552           9 LNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYL   87 (523)
Q Consensus         9 L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fl   87 (523)
                      |.... ..+..||.+|.+|++||+++     |+++|||||++|+ .++++|++.||.|....+++++|+|+||++||.||
T Consensus         5 L~~~~-~~~~~vP~il~~~i~~l~~~-----gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~fl   78 (186)
T cd04407           5 VGSLT-SNKTSVPIVLEKLLEHVEMH-----GLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWL   78 (186)
T ss_pred             HHHHH-hCCCCCCcHHHHHHHHHHHc-----CCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHH
Confidence            44433 36778999999999999999     8999999999955 99999999999987657788899999999999999


Q ss_pred             hhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccc
Q psy8552          88 KSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFV  167 (523)
Q Consensus        88 r~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v  167 (523)
                      |+||+||||+++|++|+.+.+..+..+++.+++.++..||+.|+.+|++|+.||.+|+++++.|+|+..  ++|.+|+  
T Consensus        79 ReLPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~--NLAivfa--  154 (186)
T cd04407          79 RELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPN--ALAIVFA--  154 (186)
T ss_pred             HhCCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChh--HHHHhhh--
Confidence            999999999999999999998888889999999999999999999999999999999999998887766  7777776  


Q ss_pred             cccCCCCC
Q psy8552         168 LPTFSSPP  175 (523)
Q Consensus       168 ~P~~~~pp  175 (523)
                       |++..+|
T Consensus       155 -P~Ll~~~  161 (186)
T cd04407         155 -PCLLRCP  161 (186)
T ss_pred             -ccccCCC
Confidence             6776654

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

Probab=100.00  E-value=3.4e-32  Score=252.67  Aligned_cols=158  Identities=19%  Similarity=0.375  Sum_probs=140.7

Q ss_pred             CCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Q psy8552           7 NLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKT   85 (523)
Q Consensus         7 ~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~   85 (523)
                      -+|.... ..++.||.+|.+|++||+++     |+++|||||++|+ .+|++|+++||.+....+++++|+|+||++||.
T Consensus         3 v~L~~l~-~~~~~iP~ii~~~i~~l~~~-----gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~   76 (186)
T cd04406           3 VELSRLT-SEDRSVPLVVEKLINYIEMH-----GLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQ   76 (186)
T ss_pred             CchHHHH-HCCCCCCcHHHHHHHHHHHh-----CCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHH
Confidence            4555443 35678999999999999999     8999999999955 999999999999865567888999999999999


Q ss_pred             HHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhc
Q psy8552          86 YLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFT  165 (523)
Q Consensus        86 flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~  165 (523)
                      |||+||+||||+++|++|+++....+..++++.++.++.+||+.|+.+|++|+.||.+|+++++.|+|+..  ++|.+|+
T Consensus        77 fLReLPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~--NLAivf~  154 (186)
T cd04406          77 WLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSAN--ALAIVFA  154 (186)
T ss_pred             HHHhCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChH--HHHHHhc
Confidence            99999999999999999999998888889999999999999999999999999999999999998887766  7777776


Q ss_pred             cccccCCCCC
Q psy8552         166 FVLPTFSSPP  175 (523)
Q Consensus       166 ~v~P~~~~pp  175 (523)
                         |++..+|
T Consensus       155 ---P~ll~~p  161 (186)
T cd04406         155 ---PCILRCP  161 (186)
T ss_pred             ---ccccCCC
Confidence               6666654

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife

>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

Probab=100.00  E-value=4.6e-32  Score=252.84  Aligned_cols=158  Identities=22%  Similarity=0.320  Sum_probs=143.1

Q ss_pred             CCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Q psy8552           7 NLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKT   85 (523)
Q Consensus         7 ~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~   85 (523)
                      ..|.+.+...+..||.+|.+|++||+++     |+++|||||++|+ .+|++++++|++|....+++..|+|+||++||.
T Consensus         4 ~~~~~~~~~~~~~IP~~l~~ci~~ie~~-----gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~   78 (193)
T cd04382           4 GELADFDPSTSPMIPALIVHCVNEIEAR-----GLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKD   78 (193)
T ss_pred             ccccccCCCCCCCccHHHHHHHHHHHHc-----CCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHH
Confidence            3577888889999999999999999999     8999999999965 999999999999876457778899999999999


Q ss_pred             HHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhc
Q psy8552          86 YLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFT  165 (523)
Q Consensus        86 flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~  165 (523)
                      |||+||+||||.++|+.|+++.+..+.++++.+++.++..||+.|+.+|+||+.||.+|++ +..|+|+..  ++|.+|+
T Consensus        79 fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~--NLAivf~  155 (193)
T cd04382          79 FLRSLKEPLITFALWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDIN--NLARVFG  155 (193)
T ss_pred             HHHhCCCcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChH--Hhhhhhh
Confidence            9999999999999999999999988899999999999999999999999999999999999 888877765  7777776


Q ss_pred             cccccCCCCC
Q psy8552         166 FVLPTFSSPP  175 (523)
Q Consensus       166 ~v~P~~~~pp  175 (523)
                         |++..++
T Consensus       156 ---P~L~~~~  162 (193)
T cd04382         156 ---PTIVGYS  162 (193)
T ss_pred             ---chhcCCC
Confidence               6666554

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway

>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

Probab=100.00  E-value=3.4e-32  Score=255.83  Aligned_cols=159  Identities=24%  Similarity=0.354  Sum_probs=141.0

Q ss_pred             CCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Q psy8552           7 NLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKT   85 (523)
Q Consensus         7 ~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~   85 (523)
                      =+|.......+..||.+|.+|++||+++     |+++|||||++|+ ..|++|++.||+|....+++++|+|+||++||.
T Consensus         3 v~l~~l~~~~~~~vP~iv~~ci~~i~~~-----gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~   77 (200)
T cd04408           3 VDFSQLPRDFPEEVPFVVVRCTAEIENR-----ALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKH   77 (200)
T ss_pred             CCHHHHHHhCCCCCChHHHHHHHHHHHc-----CCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHH
Confidence            3567777888999999999999999999     8999999999965 999999999999876567888999999999999


Q ss_pred             HHhhcCCCCCChhhHHHHHHHhcC-C-----------ChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy8552          86 YLKSLTEPLIPYVYYEKFVSLLSG-S-----------NDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGV  153 (523)
Q Consensus        86 flr~LpePli~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m  153 (523)
                      |||+||+||||+++|+.|+++.+. .           +..+++.+++.++..||+.|+.+|+||+.||++|+++++.|+|
T Consensus        78 fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM  157 (200)
T cd04408          78 FLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKM  157 (200)
T ss_pred             HHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence            999999999999999999998752 1           2457899999999999999999999999999999999998887


Q ss_pred             CCCccchhhhhccccccCCCCC
Q psy8552         154 REPPTILIQSFTFVLPTFSSPP  175 (523)
Q Consensus       154 ~~~~~~l~~~~~~v~P~~~~pp  175 (523)
                      +..  ++|.+|+   |++..++
T Consensus       158 ~~~--NLAivf~---P~Ll~~~  174 (200)
T cd04408         158 SPN--NLGIVFG---PTLLRPL  174 (200)
T ss_pred             CHh--Hhhhhhc---cccCCCC
Confidence            765  7777776   6776665

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

Probab=99.98  E-value=5.3e-32  Score=252.31  Aligned_cols=159  Identities=21%  Similarity=0.301  Sum_probs=142.7

Q ss_pred             CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCC---CCCHHHHHH
Q psy8552           6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFS---KLEPALLAI   81 (523)
Q Consensus         6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~---~~d~~~va~   81 (523)
                      +-+|...+.+.+..||.+|.+|++||+++     |+++|||||++|+ ..+++|++.+|.+.. +++.   ..|+|+||+
T Consensus         2 Gv~L~~~~~~~~~~iP~~l~~~i~~l~~~-----gl~~eGIFR~sg~~~~v~~l~~~~d~~~~-~~~~~~~~~d~h~va~   75 (187)
T cd04403           2 GCHLEALCQRENSTVPKFVRLCIEAVEKR-----GLDVDGIYRVSGNLAVIQKLRFAVDHDEK-LDLDDSKWEDIHVITG   75 (187)
T ss_pred             CCChHHHHHHcCCCCChHHHHHHHHHHHh-----CCCcCceeeecCcHHHHHHHHHHhcCCCC-CCccccccccHHHHHH
Confidence            56788888888999999999999999999     8999999999955 999999999999764 3332   458999999


Q ss_pred             HHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchh
Q psy8552          82 MLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILI  161 (523)
Q Consensus        82 lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~  161 (523)
                      +||.|||+||+||||+++|+.|+++.+..+..+++.+++.++..||+.|+.+|+||+.||.+|+++++.|+|+..  ++|
T Consensus        76 lLK~fLReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~--NLA  153 (187)
T cd04403          76 ALKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQ--NLA  153 (187)
T ss_pred             HHHHHHhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChH--Hhh
Confidence            999999999999999999999999999888999999999999999999999999999999999999998887755  777


Q ss_pred             hhhccccccCCCCC
Q psy8552         162 QSFTFVLPTFSSPP  175 (523)
Q Consensus       162 ~~~~~v~P~~~~pp  175 (523)
                      .+|+   |++..|+
T Consensus       154 ivf~---P~ll~~~  164 (187)
T cd04403         154 IVFG---PTLLRPE  164 (187)
T ss_pred             hhcc---ccccCCC
Confidence            7776   6776654

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

Probab=99.98  E-value=6.1e-32  Score=252.89  Aligned_cols=158  Identities=20%  Similarity=0.346  Sum_probs=141.0

Q ss_pred             CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCC----CCCHHHHH
Q psy8552           6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFS----KLEPALLA   80 (523)
Q Consensus         6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~----~~d~~~va   80 (523)
                      +-+|.+.+.+++..||.+|.+|++||+++     |+ +|||||++|+ +++++|++.+|+|.. .++.    ..|+|+||
T Consensus         4 G~~L~~~~~~~g~~iP~il~~~i~~l~~~-----g~-~EGIFR~sG~~~~i~~l~~~~d~~~~-~~~~~~~~~~d~h~va   76 (195)
T cd04384           4 GCDLTEHLLNSGQDVPQVLKSCTEFIEKH-----GI-VDGIYRLSGIASNIQRLRHEFDSEQI-PDLTKDVYIQDIHSVS   76 (195)
T ss_pred             CccHHHHHHHcCCCCChHHHHHHHHHHHc-----CC-CcCeeeCCCCHHHHHHHHHHHcCCCC-CCcccccccccHHHHH
Confidence            34677777788899999999999999999     77 5999999955 999999999999864 3443    35899999


Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccch
Q psy8552          81 IMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTIL  160 (523)
Q Consensus        81 ~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l  160 (523)
                      ++||.|||+||+||||+++|+.|+++.+..+..+++++++.++.+||+.|+.+|+||+.||++|+++++.|+|+..  ++
T Consensus        77 ~lLK~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NL  154 (195)
T cd04384          77 SLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAK--NL  154 (195)
T ss_pred             HHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHH--Hh
Confidence            9999999999999999999999999999888999999999999999999999999999999999999998888766  77


Q ss_pred             hhhhccccccCCCCC
Q psy8552         161 IQSFTFVLPTFSSPP  175 (523)
Q Consensus       161 ~~~~~~v~P~~~~pp  175 (523)
                      |.+|+   |++..+|
T Consensus       155 Aivf~---P~L~~~~  166 (195)
T cd04384         155 AIVWA---PNLLRSK  166 (195)
T ss_pred             hHhhh---hhcCCCC
Confidence            77776   7777765

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

Probab=99.98  E-value=6.5e-32  Score=250.45  Aligned_cols=150  Identities=20%  Similarity=0.297  Sum_probs=136.0

Q ss_pred             CcccccCC----CCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHH
Q psy8552           8 LLNKTDNV----SSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIM   82 (523)
Q Consensus         8 ~L~~~~~~----~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~l   82 (523)
                      +|.....+    .+..||.+|.+|++||+++     |+++|||||++|+ .+|++|++.+|++.. .+++++|+|+||++
T Consensus         4 ~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~-----gl~~EGIfR~~G~~~~i~~l~~~~~~~~~-~~~~~~d~h~va~l   77 (182)
T cd04381           4 SLSLAVERSRCHDGIDLPLVFRECIDYVEKH-----GMKCEGIYKVSGIKSKVDELKAAYNRRES-PNLEEYEPPTVASL   77 (182)
T ss_pred             CHHHHHHhhccCCCCcCChHHHHHHHHHHHh-----CCCCCceeecCCcHHHHHHHHHHHcCCCC-CCccccChHHHHHH
Confidence            44444443    3567999999999999999     8999999999955 999999999999876 68889999999999


Q ss_pred             HHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhh
Q psy8552          83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQ  162 (523)
Q Consensus        83 LK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~  162 (523)
                      ||.|||+||+||||.++|+.|+++.+..++.+++.+++.++..||+.|+.+|+||+.||.+|+++++.|+|+.+  ++|.
T Consensus        78 LK~fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLAi  155 (182)
T cd04381          78 LKQYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQ--NISI  155 (182)
T ss_pred             HHHHHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHH--HHHH
Confidence            99999999999999999999999998888999999999999999999999999999999999999988887766  7777


Q ss_pred             hhc
Q psy8552         163 SFT  165 (523)
Q Consensus       163 ~~~  165 (523)
                      +|+
T Consensus       156 vfa  158 (182)
T cd04381         156 VLS  158 (182)
T ss_pred             HhC
Confidence            786

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int

>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

Probab=99.97  E-value=1.6e-31  Score=252.29  Aligned_cols=161  Identities=23%  Similarity=0.364  Sum_probs=141.8

Q ss_pred             CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHH
Q psy8552           6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLK   84 (523)
Q Consensus         6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK   84 (523)
                      +-+|...+.+.+..||.+|.+|+++|+++     |+++|||||++|+ ..+++|++.||+|....+++++|+|+||++||
T Consensus         2 G~~L~~~~~~~~~~vP~iv~~ci~~i~~~-----gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK   76 (203)
T cd04378           2 GVDFSQVPRDFPDEVPFIIKKCTSEIENR-----ALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLK   76 (203)
T ss_pred             CCChHHHHHHCCCCCChHHHHHHHHHHhc-----CCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHH
Confidence            34677777888899999999999999999     8999999999955 99999999999987656778899999999999


Q ss_pred             HHHhhcCCCCCChhhHHHHHHHhcCC--------------ChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhh
Q psy8552          85 TYLKSLTEPLIPYVYYEKFVSLLSGS--------------NDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYA  150 (523)
Q Consensus        85 ~flr~LpePli~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~  150 (523)
                      .|||+||+||||+++|+.|+++.+..              +..+++.+++.++..||..|+.+|+||+.||.+|+++++.
T Consensus        77 ~fLReLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~  156 (203)
T cd04378          77 LFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEE  156 (203)
T ss_pred             HHHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999987521              2245788999999999999999999999999999999999


Q ss_pred             cCCCCCccchhhhhccccccCCCCCC
Q psy8552         151 RGVREPPTILIQSFTFVLPTFSSPPA  176 (523)
Q Consensus       151 n~m~~~~~~l~~~~~~v~P~~~~pp~  176 (523)
                      |+|+..  ++|.+|+   |++..|+.
T Consensus       157 NkM~~~--NLaivf~---P~Ll~~~~  177 (203)
T cd04378         157 NKMSPN--NLGIVFG---PTLIRPRP  177 (203)
T ss_pred             hCCCHH--Hhhhhhc---cccCCCCC
Confidence            988766  7777776   77777763

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge

>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

Probab=99.97  E-value=2.5e-31  Score=253.10  Aligned_cols=162  Identities=16%  Similarity=0.172  Sum_probs=144.5

Q ss_pred             CCCCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHH
Q psy8552           4 YAPNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIM   82 (523)
Q Consensus         4 ~~p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~l   82 (523)
                      .++-||...+++.+..||.+|.+|++||+++     |+++|||||++|+ .+|++|++++|++....++++.++|+||++
T Consensus         4 vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~-----gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~l   78 (220)
T cd04375           4 VFGVPLLVNLQRTGQPLPRSIQQAMRWLRNN-----ALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADM   78 (220)
T ss_pred             EecCcHHHHHhhcCCCCChHHHHHHHHHHHh-----CCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHH
Confidence            3456777777888899999999999999999     9999999999955 999999999999765467778899999999


Q ss_pred             HHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhh
Q psy8552          83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQ  162 (523)
Q Consensus        83 LK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~  162 (523)
                      ||.|||+||+||||+++|+.|+++.+..+.++++++++.++..||+.|+.+|++|+.||.+|+++++.|+|+..  ++|.
T Consensus        79 LK~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLAi  156 (220)
T cd04375          79 LKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTAT--NLAV  156 (220)
T ss_pred             HHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHH--HHHH
Confidence            99999999999999999999999988778889999999999999999999999999999999999998887766  6777


Q ss_pred             hhccccccCCCCC
Q psy8552         163 SFTFVLPTFSSPP  175 (523)
Q Consensus       163 ~~~~v~P~~~~pp  175 (523)
                      +|+   |++...+
T Consensus       157 vfa---P~L~~~~  166 (220)
T cd04375         157 CLA---PSLFHLN  166 (220)
T ss_pred             HHh---hhhcCCC
Confidence            775   5655543

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

Probab=99.97  E-value=3e-31  Score=251.30  Aligned_cols=160  Identities=26%  Similarity=0.407  Sum_probs=138.4

Q ss_pred             CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHH
Q psy8552           6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLK   84 (523)
Q Consensus         6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK   84 (523)
                      +-+|...+.++++.||.+|.+|+++|+++     |+++|||||++|+ ..+++|++.||+|....+++++|+|+||++||
T Consensus         2 G~~L~~~~~~~~~~iP~il~~ci~~ie~~-----gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK   76 (211)
T cd04409           2 GADFAQVAKKSPDGIPFIIKKCTSEIESR-----ALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLK   76 (211)
T ss_pred             CCChHHHHHhCCCCCCcHHHHHHHHHHHc-----CCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHH
Confidence            34677777788889999999999999999     9999999999966 99999999999987656677889999999999


Q ss_pred             HHHhhcCCCCCChhhHHHHHHHhcCC---Ch-------------------HHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q psy8552          85 TYLKSLTEPLIPYVYYEKFVSLLSGS---ND-------------------RHIGSRLFALVQDFPAHHFSALRYLMAHLA  142 (523)
Q Consensus        85 ~flr~LpePli~~~~~~~~~~~~~~~---~~-------------------~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~  142 (523)
                      .|||+||+||||.++|+.|+++++..   ++                   ..++.+++.++..||+.|+.+|+||+.||+
T Consensus        77 ~fLReLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~  156 (211)
T cd04409          77 LYLRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLH  156 (211)
T ss_pred             HHHHhCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999987521   10                   124678899999999999999999999999


Q ss_pred             HHHHhhhhcCCCCCccchhhhhccccccCCCCC
Q psy8552         143 RMCALQYARGVREPPTILIQSFTFVLPTFSSPP  175 (523)
Q Consensus       143 ~v~~~~~~n~m~~~~~~l~~~~~~v~P~~~~pp  175 (523)
                      +|+++++.|+|+..  ++|.+|+   |++..|+
T Consensus       157 ~V~~~s~~NkM~~~--NLAivf~---P~Llrp~  184 (211)
T cd04409         157 RVSEQAEENKMSAS--NLGIIFG---PTLIRPR  184 (211)
T ss_pred             HHHcccccCCCChH--Hhhhhcc---ccccCCC
Confidence            99999998887766  7777776   7777664

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

Probab=99.97  E-value=7.3e-31  Score=247.08  Aligned_cols=162  Identities=19%  Similarity=0.226  Sum_probs=135.4

Q ss_pred             CCCcccccCC--CCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCC--C-CCHHHH
Q psy8552           6 PNLLNKTDNV--SSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFS--K-LEPALL   79 (523)
Q Consensus         6 p~~L~~~~~~--~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~--~-~d~~~v   79 (523)
                      +-+|...+.+  .+..||.+|.+|++||+++     |+++|||||++|+ .++++|++.||++....++.  . .|+|+|
T Consensus         2 GvpL~~l~~re~~~~~IP~iv~~ci~~L~~~-----gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~v   76 (207)
T cd04379           2 GVPLSRLVEREGESRDVPIVLQKCVQEIERR-----GLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVI   76 (207)
T ss_pred             CCChHHHHhhcCCCCCcChHHHHHHHHHHHc-----CCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHH
Confidence            3455555555  4678999999999999999     8999999999955 99999999999975434443  2 389999


Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHhcCC---ChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy8552          80 AIMLKTYLKSLTEPLIPYVYYEKFVSLLSGS---NDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREP  156 (523)
Q Consensus        80 a~lLK~flr~LpePli~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~  156 (523)
                      |++||.|||+|||||||+++|+.|+++.+..   +.......++.++.+||+.|+++|+||+.||.+|+++++.|+|+..
T Consensus        77 A~lLK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~  156 (207)
T cd04379          77 TGVLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQ  156 (207)
T ss_pred             HHHHHHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChH
Confidence            9999999999999999999999999988743   2334566788999999999999999999999999999998887766


Q ss_pred             ccchhhhhccccccCCCCCCC
Q psy8552         157 PTILIQSFTFVLPTFSSPPAL  177 (523)
Q Consensus       157 ~~~l~~~~~~v~P~~~~pp~~  177 (523)
                        ++|.+|+   |++..++..
T Consensus       157 --NLAivf~---P~Ll~~~~~  172 (207)
T cd04379         157 --NLAVCFG---PVLMFCSQE  172 (207)
T ss_pred             --HhHHhhc---cccCCCCcc
Confidence              7788886   777766533

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

Probab=99.97  E-value=1.1e-30  Score=242.70  Aligned_cols=155  Identities=19%  Similarity=0.333  Sum_probs=137.5

Q ss_pred             CcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCC--CCCCHHHHHHHHH
Q psy8552           8 LLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNF--SKLEPALLAIMLK   84 (523)
Q Consensus         8 ~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~--~~~d~~~va~lLK   84 (523)
                      ||...+. .+..||.+|.+|++||+++     |+++|||||++|+ .+++++++.||++.. .++  .++|+|+||++||
T Consensus         4 pL~~~~~-~~~~IP~~l~~~i~~l~~~-----gl~~eGIFR~~G~~~~i~~l~~~~~~~~~-~~~~~~~~~~~~va~~lK   76 (185)
T cd04373           4 PLANVVT-SEKPIPIFLEKCVEFIEAT-----GLETEGIYRVSGNKTHLDSLQKQFDQDHN-LDLVSKDFTVNAVAGALK   76 (185)
T ss_pred             chHHHHh-CCCCCCcHHHHHHHHHHHc-----CCCCCCeeecCCcHHHHHHHHHHHhcCCC-CCcccccCcHHHHHHHHH
Confidence            4555544 5779999999999999998     8999999999955 999999999999764 344  4678999999999


Q ss_pred             HHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhh
Q psy8552          85 TYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSF  164 (523)
Q Consensus        85 ~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~  164 (523)
                      .|||+||+||+|+++|+.|+++.+..+..+++.+++.+++.||+.|+.+|+||+.||.+|+++++.|+|+..  ++|.+|
T Consensus        77 ~fLreLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~--NLAi~f  154 (185)
T cd04373          77 SFFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSE--NLSICF  154 (185)
T ss_pred             HHHhcCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChH--HHHHHH
Confidence            999999999999999999999999888899999999999999999999999999999999999998887765  777777


Q ss_pred             ccccccCCCC
Q psy8552         165 TFVLPTFSSP  174 (523)
Q Consensus       165 ~~v~P~~~~p  174 (523)
                      +   |++..|
T Consensus       155 ~---P~L~~~  161 (185)
T cd04373         155 W---PTLMRP  161 (185)
T ss_pred             c---cccCCC
Confidence            6   566554

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

Probab=99.97  E-value=2.5e-30  Score=242.06  Aligned_cols=157  Identities=18%  Similarity=0.251  Sum_probs=141.9

Q ss_pred             CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHH
Q psy8552           6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLK   84 (523)
Q Consensus         6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK   84 (523)
                      +-||...+.  +..||.+|.+|++||+++     |+++|||||++|+ .+++++++.+|+|.. .+++++|+|++|++||
T Consensus         3 G~~L~~~~~--~~~vP~~i~~~i~~l~~~-----g~~~eGiFR~~g~~~~i~~l~~~~~~~~~-~~~~~~~~~~va~~lK   74 (192)
T cd04402           3 GQPLSNICE--DDNLPKPILDMLSLLYQK-----GPSTEGIFRRSANAKACKELKEKLNSGVE-VDLKAEPVLLLASVLK   74 (192)
T ss_pred             CCcHHHHhC--CCCCCHHHHHHHHHHHHh-----CCCCCCeeeCCCcHHHHHHHHHHHhCCCC-CCCccCCHHHHHHHHH
Confidence            456777766  678999999999999999     8999999999955 999999999999975 6788999999999999


Q ss_pred             HHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhh
Q psy8552          85 TYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSF  164 (523)
Q Consensus        85 ~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~  164 (523)
                      .|||+||+||||.+.|+.|+.+.+..+.++++..++.++.+||..|+.+|+||+.||.+|+.+++.|+|++.  ++|.+|
T Consensus        75 ~flreLpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~--nLAi~f  152 (192)
T cd04402          75 DFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAF--NLAVCI  152 (192)
T ss_pred             HHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHH--Hhhhhc
Confidence            999999999999999999999998888999999999999999999999999999999999999988887766  777777


Q ss_pred             ccccccCCCCC
Q psy8552         165 TFVLPTFSSPP  175 (523)
Q Consensus       165 ~~v~P~~~~pp  175 (523)
                      +   |++..++
T Consensus       153 a---P~l~~~~  160 (192)
T cd04402         153 A---PSLLWPP  160 (192)
T ss_pred             c---ccccCCC
Confidence            6   5665554

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

Probab=99.97  E-value=4.6e-30  Score=241.89  Aligned_cols=149  Identities=17%  Similarity=0.257  Sum_probs=130.6

Q ss_pred             CCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCC-CCCCHHHHHHHHHHHHhhcCC
Q psy8552          15 VSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNF-SKLEPALLAIMLKTYLKSLTE   92 (523)
Q Consensus        15 ~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~-~~~d~~~va~lLK~flr~Lpe   92 (523)
                      ..++.||.+|.+|++||+++     |+++|||||++|+ ..|++|++.||+|.. .++ +..|+|+||++||.|||+||+
T Consensus         4 ~~~~~iP~iv~~ci~~l~~~-----gl~~EGIFR~~G~~~~i~~l~~~~d~~~~-~~~~~~~~~h~va~lLK~fLReLPe   77 (206)
T cd04376           4 PIARQVPRLVESCCQHLEKH-----GLQTVGIFRVGSSKKRVRQLREEFDRGID-VVLDENHSVHDVAALLKEFFRDMPD   77 (206)
T ss_pred             CCCCCCCHHHHHHHHHHHHc-----CCCCCceeeCCCCHHHHHHHHHHHhcCCC-CCCcccCCHHHHHHHHHHHHHhCCC
Confidence            44668999999999999999     8999999999955 999999999999875 334 357999999999999999999


Q ss_pred             CCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhh-----------hcCCCCCccchh
Q psy8552          93 PLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQY-----------ARGVREPPTILI  161 (523)
Q Consensus        93 Pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~-----------~n~m~~~~~~l~  161 (523)
                      ||+|+++|+.|+.+.+.. .++++.+++.++..||+.|+.+|+||+.||++|++++.           .|+|+  ..++|
T Consensus        78 PLi~~~~y~~~i~~~~~~-~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~--~~NLA  154 (206)
T cd04376          78 PLLPRELYTAFIGTALLE-PDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMT--SLNLA  154 (206)
T ss_pred             ccCCHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCC--HHHHH
Confidence            999999999999998764 67889999999999999999999999999999999886           45544  45777


Q ss_pred             hhhccccccCCCCC
Q psy8552         162 QSFTFVLPTFSSPP  175 (523)
Q Consensus       162 ~~~~~v~P~~~~pp  175 (523)
                      .+|+   |++..++
T Consensus       155 ivf~---P~Ll~~~  165 (206)
T cd04376         155 TIFG---PNLLHKQ  165 (206)
T ss_pred             HHhh---ccccCCC
Confidence            7776   7777664

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

Probab=99.97  E-value=4.4e-30  Score=245.74  Aligned_cols=151  Identities=21%  Similarity=0.268  Sum_probs=132.7

Q ss_pred             CCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCC---CCCCCCCCCHHHHHHHHHHHHhhc
Q psy8552          15 VSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEI---KSYNFSKLEPALLAIMLKTYLKSL   90 (523)
Q Consensus        15 ~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~---~~~~~~~~d~~~va~lLK~flr~L   90 (523)
                      .+.+.||.+|.+|++||+++     |+++|||||++|+ .++++|++.||++.   ..++++++|+|+||++||.|||+|
T Consensus        27 ~~~~~IP~iv~~ci~~l~~~-----gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~~~~~~~vh~va~lLK~fLReL  101 (225)
T cd04396          27 YVYGYIPVVVAKCGVYLKEN-----ATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSFDWDGYTVHDAASVLRRYLNNL  101 (225)
T ss_pred             ccCCCCChHHHHHHHHHHHC-----CCCCCCceeCCCCHHHHHHHHHHHccCcccCCcCCccCCCHHHHHHHHHHHHHhC
Confidence            34568999999999999999     8999999999955 99999999999864   235667889999999999999999


Q ss_pred             CCCCCChhhHHHHHHHhcC-----------------CChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy8552          91 TEPLIPYVYYEKFVSLLSG-----------------SNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGV  153 (523)
Q Consensus        91 pePli~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m  153 (523)
                      |+||||+++|++|++++..                 .+.++++.+++.++..||+.|+.+|+||+.||++|+++++.|+|
T Consensus       102 PePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM  181 (225)
T cd04396         102 PEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDKNLM  181 (225)
T ss_pred             CCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccC
Confidence            9999999999999987642                 35678999999999999999999999999999999999999988


Q ss_pred             CCCccchhhhhccccccCCCCC
Q psy8552         154 REPPTILIQSFTFVLPTFSSPP  175 (523)
Q Consensus       154 ~~~~~~l~~~~~~v~P~~~~pp  175 (523)
                      ++.  ++|.+|+   |++..+|
T Consensus       182 ~~~--NLAivfa---P~Ll~~~  198 (225)
T cd04396         182 TAS--NLAAIFQ---PGILSHP  198 (225)
T ss_pred             Chh--hhheeec---cccCCCC
Confidence            877  6677775   6776654

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

Probab=99.97  E-value=5.6e-30  Score=237.92  Aligned_cols=152  Identities=19%  Similarity=0.273  Sum_probs=135.3

Q ss_pred             CCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCC--CCCCCCCHHHHHHHHHHHHhhc
Q psy8552          14 NVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKS--YNFSKLEPALLAIMLKTYLKSL   90 (523)
Q Consensus        14 ~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~--~~~~~~d~~~va~lLK~flr~L   90 (523)
                      ...+..||.+|.+|++||+++     |+++|||||++|+ .++++|++.|+++...  .+.+++|+|+||++||.|||+|
T Consensus         9 ~~~~~~iP~~v~~~i~~l~~~-----g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLreL   83 (184)
T cd04385           9 QLTDNDIPVIVDKCIDFITQH-----GLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLRDL   83 (184)
T ss_pred             hhCCCCCChHHHHHHHHHHHh-----CCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHHhC
Confidence            445688999999999999999     8999999999966 9999999999986532  3356789999999999999999


Q ss_pred             CCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhcccccc
Q psy8552          91 TEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPT  170 (523)
Q Consensus        91 pePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~  170 (523)
                      |+||||.++|++|+++.+..+..+++..++.++.+||+.|+.+|++|+.||++|+++++.|+|+..  ++|.+|+   |+
T Consensus        84 P~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~--nLaiv~~---P~  158 (184)
T cd04385          84 PDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVH--NLALVFG---PT  158 (184)
T ss_pred             CCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChH--Hhhhhhc---cc
Confidence            999999999999999999889999999999999999999999999999999999999988877655  7777776   56


Q ss_pred             CCCCC
Q psy8552         171 FSSPP  175 (523)
Q Consensus       171 ~~~pp  175 (523)
                      +..++
T Consensus       159 ll~~~  163 (184)
T cd04385         159 LFQTD  163 (184)
T ss_pred             cCCCC
Confidence            65554

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

Probab=99.97  E-value=3.7e-30  Score=242.58  Aligned_cols=160  Identities=23%  Similarity=0.316  Sum_probs=136.0

Q ss_pred             CCCCcccccCCC----CCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCC-CCCCHHH
Q psy8552           5 APNLLNKTDNVS----STTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNF-SKLEPAL   78 (523)
Q Consensus         5 ~p~~L~~~~~~~----~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~-~~~d~~~   78 (523)
                      .+-+|.+....+    ...||.+|.+|++||+++     |+++|||||++|+ .+++++++.+|+|.. .++ .+.|+|+
T Consensus         3 FG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~-----gl~~eGIFR~~G~~~~i~~l~~~~d~~~~-~~~~~~~d~h~   76 (199)
T cd04390           3 FGQRLEDTVAYERKFGPRLVPILVEQCVDFIREH-----GLKEEGLFRLPGQANLVKQLQDAFDAGER-PSFDSDTDVHT   76 (199)
T ss_pred             CCccHHHHHHHhcccCCCCCChHHHHHHHHHHHc-----CCCCCCeeeCCCCHHHHHHHHHHHhCCCC-CCccccCCHHH
Confidence            345566554322    356999999999999999     8999999999955 999999999999875 344 3679999


Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHhcC--CChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy8552          79 LAIMLKTYLKSLTEPLIPYVYYEKFVSLLSG--SNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREP  156 (523)
Q Consensus        79 va~lLK~flr~LpePli~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~  156 (523)
                      ||++||.|||+||+||+|+++|+.|+.+.+.  .+..+++.+++.++..||+.|+.+|+||+.||.+|+++++.|+|+..
T Consensus        77 va~lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~  156 (199)
T cd04390          77 VASLLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQ  156 (199)
T ss_pred             HHHHHHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHH
Confidence            9999999999999999999999999998773  45677888999999999999999999999999999999998887766


Q ss_pred             ccchhhhhccccccCCCCC
Q psy8552         157 PTILIQSFTFVLPTFSSPP  175 (523)
Q Consensus       157 ~~~l~~~~~~v~P~~~~pp  175 (523)
                        ++|.+|+   |++..|+
T Consensus       157 --NLAivf~---P~llr~~  170 (199)
T cd04390         157 --NLATVFG---PNILRPK  170 (199)
T ss_pred             --HHHHHhc---cccCCCC
Confidence              7777776   6666653

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r

>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

Probab=99.97  E-value=3.9e-30  Score=245.14  Aligned_cols=160  Identities=16%  Similarity=0.225  Sum_probs=139.9

Q ss_pred             CCcccccCC-----CCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCC--CCCCCCCCHHH
Q psy8552           7 NLLNKTDNV-----SSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIK--SYNFSKLEPAL   78 (523)
Q Consensus         7 ~~L~~~~~~-----~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~--~~~~~~~d~~~   78 (523)
                      -+|...+.+     ++..||.+|.+|++||+++     |+++|||||++|+ ++|++|++++|++..  ..+++.+|+|+
T Consensus         4 v~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~-----gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~   78 (216)
T cd04391           4 VPLSTLLERDQKKVPGSKVPLIFQKLINKLEER-----GLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHD   78 (216)
T ss_pred             CCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHc-----CCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHH
Confidence            345444443     3568999999999999999     8999999999955 999999999998632  35677889999


Q ss_pred             HHHHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcc
Q psy8552          79 LAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPT  158 (523)
Q Consensus        79 va~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~  158 (523)
                      ||++||.|||+||+||||+++|+.|+++.+..+.++++.+++.++..||+.|+.+|+||+.||++|+++++.|+|+..  
T Consensus        79 va~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--  156 (216)
T cd04391          79 AASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLW--  156 (216)
T ss_pred             HHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChH--
Confidence            999999999999999999999999999988888889999999999999999999999999999999999998888766  


Q ss_pred             chhhhhccccccCCCCCC
Q psy8552         159 ILIQSFTFVLPTFSSPPA  176 (523)
Q Consensus       159 ~l~~~~~~v~P~~~~pp~  176 (523)
                      ++|.+||   |++.++..
T Consensus       157 NLAivfa---P~l~~~~~  171 (216)
T cd04391         157 NVAMIMA---PNLFPPRG  171 (216)
T ss_pred             HHHHHhc---cccCCCCC
Confidence            6888886   77776653

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

Probab=99.97  E-value=3.8e-30  Score=239.64  Aligned_cols=159  Identities=19%  Similarity=0.359  Sum_probs=141.2

Q ss_pred             CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHH
Q psy8552           6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLK   84 (523)
Q Consensus         6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK   84 (523)
                      +-+|.... ..+..||.+|.+|++||+++     |+++|||||++|+ .+++++++.+|++....+++++|+|+||++||
T Consensus         2 G~~L~~~~-~~~~~vP~~l~~~~~~l~~~-----g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK   75 (186)
T cd04377           2 GVSLSSLT-SEDRSVPLVLEKLLEHIEMH-----GLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLK   75 (186)
T ss_pred             CCCHHHHH-hCCCCCChHHHHHHHHHHHc-----CCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHH
Confidence            34566554 35678999999999999999     8999999999955 99999999999986557788999999999999


Q ss_pred             HHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhh
Q psy8552          85 TYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSF  164 (523)
Q Consensus        85 ~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~  164 (523)
                      .|||+||+||||++.|++|+.+....+..+++.+++.++.+||+.|+.+|+||+.||.+|+++++.|+|+..  ++|.+|
T Consensus        76 ~flr~LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~--nLaivf  153 (186)
T cd04377          76 QWLRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSAN--ALAIVF  153 (186)
T ss_pred             HHHHcCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHH--HHHHHH
Confidence            999999999999999999999999888899999999999999999999999999999999999998888765  777777


Q ss_pred             ccccccCCCCC
Q psy8552         165 TFVLPTFSSPP  175 (523)
Q Consensus       165 ~~v~P~~~~pp  175 (523)
                      +   |++..+|
T Consensus       154 ~---P~ll~~~  161 (186)
T cd04377         154 A---PCILRCP  161 (186)
T ss_pred             h---hHhcCCC
Confidence            6   5555554

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

Probab=99.97  E-value=4.7e-30  Score=243.90  Aligned_cols=149  Identities=19%  Similarity=0.294  Sum_probs=130.6

Q ss_pred             CCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCC-CCCCCCCCHHHHHHHHHHHHhhcCCCCCC
Q psy8552          19 TSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIK-SYNFSKLEPALLAIMLKTYLKSLTEPLIP   96 (523)
Q Consensus        19 ~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~-~~~~~~~d~~~va~lLK~flr~LpePli~   96 (523)
                      .||.+|.+|++||+++     |+++|||||++|+ .++++|++++|++.. .+++...|+|+||++||.|||+||+||||
T Consensus        26 ~IP~~l~~~i~~l~~~-----gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~~~va~lLK~flReLPepLi~  100 (213)
T cd04397          26 RIPALIDDIISAMRQM-----DMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENPVQLAALLKKFLRELPDPLLT  100 (213)
T ss_pred             CCCHHHHHHHHHHHHc-----CCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcHHHHHHHHHHHHHhCCCccCC
Confidence            6999999999999999     8999999999966 999999999999764 24677889999999999999999999999


Q ss_pred             hhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhh---cCCCCCccchhhhhccccccCCC
Q psy8552          97 YVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYA---RGVREPPTILIQSFTFVLPTFSS  173 (523)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~---n~m~~~~~~l~~~~~~v~P~~~~  173 (523)
                      +++|+.|+++.+..+.+++++.++.++..||+.|+.+|++|+.||++|+.++..   +.++|+..++|.+|+   |++..
T Consensus       101 ~~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~NkM~~~NLAivf~---P~Ll~  177 (213)
T cd04397         101 FKLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVIT---PNILY  177 (213)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCCcCChHHhHHhhc---ccccC
Confidence            999999999999889999999999999999999999999999999999987653   223334447777775   67766


Q ss_pred             CC
Q psy8552         174 PP  175 (523)
Q Consensus       174 pp  175 (523)
                      ++
T Consensus       178 ~~  179 (213)
T cd04397         178 SK  179 (213)
T ss_pred             CC
Confidence            54

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

Probab=99.97  E-value=7.1e-30  Score=241.30  Aligned_cols=162  Identities=18%  Similarity=0.279  Sum_probs=143.3

Q ss_pred             CCCCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCC--CCCCCHHHHH
Q psy8552           4 YAPNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYN--FSKLEPALLA   80 (523)
Q Consensus         4 ~~p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~--~~~~d~~~va   80 (523)
                      ..+-+|...+..++..||.+|.+|+.||+++     |+++|||||++|+ .+++++++.+|.|....+  ....|+|+||
T Consensus         4 ~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~-----gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va   78 (203)
T cd04386           4 VFGTPLEEHLKRTGREIALPIEACVMCLLET-----GMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVA   78 (203)
T ss_pred             cCCCCHHHHHHHcCCCCCHHHHHHHHHHHHc-----CCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHH
Confidence            4567788888788889999999999999999     8999999999955 999999999999875332  2346899999


Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccch
Q psy8552          81 IMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTIL  160 (523)
Q Consensus        81 ~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l  160 (523)
                      ++||.|||+||+||+|.++|+.|+++.+..+..+++.+++.++.+||..|+.+|+||+.||.+|+++++.|+|+..  ++
T Consensus        79 ~~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~--nL  156 (203)
T cd04386          79 SALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPS--NI  156 (203)
T ss_pred             HHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChH--HH
Confidence            9999999999999999999999999998888889999999999999999999999999999999999988887766  77


Q ss_pred             hhhhccccccCCCCC
Q psy8552         161 IQSFTFVLPTFSSPP  175 (523)
Q Consensus       161 ~~~~~~v~P~~~~pp  175 (523)
                      |.+|+   |++..++
T Consensus       157 ai~fa---P~ll~~~  168 (203)
T cd04386         157 AIVLA---PNLLWAK  168 (203)
T ss_pred             HHHhc---cccCCCC
Confidence            77775   6666654

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

Probab=99.97  E-value=1.2e-29  Score=238.03  Aligned_cols=160  Identities=20%  Similarity=0.278  Sum_probs=141.9

Q ss_pred             CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCC-----CCCCHHHH
Q psy8552           6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNF-----SKLEPALL   79 (523)
Q Consensus         6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~-----~~~d~~~v   79 (523)
                      +-+|...+.+++..||.+|.+|+++|+++     |+++|||||++|+ .+++++++.+|++....+.     ...|+|+|
T Consensus         2 G~~L~~~~~~~~~~iP~~v~~~i~~l~~~-----gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~v   76 (192)
T cd04398           2 GVPLEDLILREGDNVPNIVYQCIQAIENF-----GLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSV   76 (192)
T ss_pred             CCChHHHHHHcCCCCCHHHHHHHHHHHHh-----CCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHH
Confidence            45777888888899999999999999999     8999999999955 9999999999998643332     24589999


Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc
Q psy8552          80 AIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTI  159 (523)
Q Consensus        80 a~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~  159 (523)
                      |++||.|||+||+||+|.++|+.|+++.+..+..+++.+++.++.+||..|+.+|+||+.||.+|+.+++.|+|+..  +
T Consensus        77 a~~LK~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~--n  154 (192)
T cd04398          77 ASLLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVN--N  154 (192)
T ss_pred             HHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHh--H
Confidence            99999999999999999999999999999888899999999999999999999999999999999999999987765  7


Q ss_pred             hhhhhccccccCCCCC
Q psy8552         160 LIQSFTFVLPTFSSPP  175 (523)
Q Consensus       160 l~~~~~~v~P~~~~pp  175 (523)
                      +|.+|+   |++.+++
T Consensus       155 Laivf~---P~l~~~~  167 (192)
T cd04398         155 LAIIWG---PTLMNAA  167 (192)
T ss_pred             HHHHHh---hhhCCCC
Confidence            777776   6666554

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

Probab=99.96  E-value=1.4e-29  Score=237.56  Aligned_cols=148  Identities=22%  Similarity=0.285  Sum_probs=128.8

Q ss_pred             CCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHH-HhCC---CCCCCCC--CCCHHHHHHHHHHHHhhc
Q psy8552          18 TTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHA-YSGE---IKSYNFS--KLEPALLAIMLKTYLKSL   90 (523)
Q Consensus        18 ~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~-~~~~---~~~~~~~--~~d~~~va~lLK~flr~L   90 (523)
                      +..+.+|.+|++||+++     |+++|||||+||+ .+|+++++. +|.+   ....++.  .+|+|+||++||.|||+|
T Consensus        26 ~~~~~iv~~ci~~le~~-----gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReL  100 (203)
T cd04374          26 DIGFKFVRKCIEAVETR-----GINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNL  100 (203)
T ss_pred             cccHHHHHHHHHHHHHc-----CCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcC
Confidence            34566899999999999     8999999999955 999999875 5654   1224454  479999999999999999


Q ss_pred             CCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhcccccc
Q psy8552          91 TEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPT  170 (523)
Q Consensus        91 pePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~  170 (523)
                      |+||||+++|+.|+++.+..+.++++.+++.++..||+.|+.+|++|+.||.+|++++..|+|+..  ++|.+|+   |+
T Consensus       101 PePLi~~~~y~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLAivf~---P~  175 (203)
T cd04374         101 PEPLMTYELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVS--NLGVVFG---PT  175 (203)
T ss_pred             CCCcCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHH--HHHHHhc---cc
Confidence            999999999999999999888899999999999999999999999999999999999998887766  7777786   67


Q ss_pred             CCCCC
Q psy8552         171 FSSPP  175 (523)
Q Consensus       171 ~~~pp  175 (523)
                      +..|+
T Consensus       176 Llr~~  180 (203)
T cd04374         176 LLRPQ  180 (203)
T ss_pred             cCCCC
Confidence            76653

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

Probab=99.96  E-value=3.7e-29  Score=235.09  Aligned_cols=159  Identities=18%  Similarity=0.267  Sum_probs=138.4

Q ss_pred             CCcccccCCC-CCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCC---CCCHHHHHH
Q psy8552           7 NLLNKTDNVS-STTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFS---KLEPALLAI   81 (523)
Q Consensus         7 ~~L~~~~~~~-~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~---~~d~~~va~   81 (523)
                      =||....... +..||.+|.+|+++|+++     |+++|||||++|+ .++++|++.+|+|....++.   ..|+|+||+
T Consensus         4 vpl~~~~~~~~~~~vP~iv~~~~~~l~~~-----g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~   78 (196)
T cd04395           4 VPLDDCPPSSENPYVPLIVEVCCNIVEAR-----GLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSS   78 (196)
T ss_pred             ccHHHHhcccCCCCCChHHHHHHHHHHHc-----CCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHH
Confidence            3455444433 468999999999999999     8999999999955 99999999999987543433   468999999


Q ss_pred             HHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchh
Q psy8552          82 MLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILI  161 (523)
Q Consensus        82 lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~  161 (523)
                      +||.|||+||+||||.+.|++|+++.+..+..+++.+++.++.+||+.|+.+|+||+.||.+|+++++.|+|+..  ++|
T Consensus        79 llK~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~--nLA  156 (196)
T cd04395          79 LLKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPR--NLA  156 (196)
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccc--chH
Confidence            999999999999999999999999998888899999999999999999999999999999999999999988766  777


Q ss_pred             hhhccccccCCCCC
Q psy8552         162 QSFTFVLPTFSSPP  175 (523)
Q Consensus       162 ~~~~~v~P~~~~pp  175 (523)
                      .+|+   |++.+++
T Consensus       157 i~fa---P~l~r~~  167 (196)
T cd04395         157 IVFG---PTLVRTS  167 (196)
T ss_pred             Hhhc---cccCCCC
Confidence            7786   5666554

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

Probab=99.96  E-value=2.8e-29  Score=236.48  Aligned_cols=148  Identities=22%  Similarity=0.251  Sum_probs=132.0

Q ss_pred             CCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhcCCC
Q psy8552          15 VSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEP   93 (523)
Q Consensus        15 ~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~flr~LpeP   93 (523)
                      .++..||.+|.+|++||++      |+++|||||++|+ .++++|++++|+|..  .....++|+||++||.|||+||+|
T Consensus        15 ~~~~~IP~il~~~~~~l~~------~l~~EGIFR~sG~~~~i~~l~~~~d~~~~--~~~~~~~~~vaslLK~flReLPeP   86 (202)
T cd04394          15 PEYGNVPKFLVDACTFLLD------HLSTEGLFRKSGSVVRQKELKAKLEGGEA--CLSSALPCDVAGLLKQFFRELPEP   86 (202)
T ss_pred             CCCCCCChHHHHHHHHHHH------CCCCCCeeeCCCCHHHHHHHHHHHcCCCC--CccccCHHHHHHHHHHHHhcCCCc
Confidence            4577999999999999985      5889999999955 999999999999875  345678999999999999999999


Q ss_pred             CCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccccccCCC
Q psy8552          94 LIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSS  173 (523)
Q Consensus        94 li~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~~~~  173 (523)
                      |||+++|+.|+++.+..++++++.+++.++..||..|+.+|+||+.||++|+++++.|+|+..  ++|.+|+   |++..
T Consensus        87 Li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~--NLAivfa---P~L~~  161 (202)
T cd04394          87 LLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSS--NLAVIFA---PNLFQ  161 (202)
T ss_pred             CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHH--HHHHhhc---ceeec
Confidence            999999999999998888888999999999999999999999999999999999988887766  7777886   66666


Q ss_pred             CC
Q psy8552         174 PP  175 (523)
Q Consensus       174 pp  175 (523)
                      ++
T Consensus       162 ~~  163 (202)
T cd04394         162 SE  163 (202)
T ss_pred             CC
Confidence            54

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

Probab=99.96  E-value=5.3e-29  Score=232.67  Aligned_cols=159  Identities=20%  Similarity=0.280  Sum_probs=137.0

Q ss_pred             CCCcccccCC--CCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCC-CCHHHHHH
Q psy8552           6 PNLLNKTDNV--SSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSK-LEPALLAI   81 (523)
Q Consensus         6 p~~L~~~~~~--~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~-~d~~~va~   81 (523)
                      +-+|.....+  .+..||.+|.+|++||+++     |+++|||||++|+ .+++++++.+|+|.. .+++. +|+|++|+
T Consensus         4 Gv~L~~l~~~~~~~~~vP~il~~~i~~l~~~-----gl~~eGIFR~~g~~~~i~~l~~~~d~~~~-~~~~~~~d~~~va~   77 (189)
T cd04393           4 GVPLQELQQAGQPENGVPAVVRHIVEYLEQH-----GLEQEGLFRVNGNAETVEWLRQRLDSGEE-VDLSKEADVCSAAS   77 (189)
T ss_pred             cccHHHHHhccCCCCCCChHHHHHHHHHHHc-----CCCCCCeeeCCCCHHHHHHHHHHHcCCCC-CCccccCCHHHHHH
Confidence            4455555443  3568999999999999999     9999999999955 999999999999875 45554 89999999


Q ss_pred             HHHHHHhhcCCCCCChhhHHHHHHHhc-CCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccch
Q psy8552          82 MLKTYLKSLTEPLIPYVYYEKFVSLLS-GSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTIL  160 (523)
Q Consensus        82 lLK~flr~LpePli~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l  160 (523)
                      +||.|||+||+||+|.+.|+.|+++.+ ..++++++.+++.++..||+.|+.+|++|+.||++|+++++.|+|+..  ++
T Consensus        78 ~lK~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~--nL  155 (189)
T cd04393          78 LLRLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAE--NL  155 (189)
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHH--Hh
Confidence            999999999999999999999999876 446778899999999999999999999999999999999998887765  77


Q ss_pred             hhhhccccccCCCCC
Q psy8552         161 IQSFTFVLPTFSSPP  175 (523)
Q Consensus       161 ~~~~~~v~P~~~~pp  175 (523)
                      |.+|+   |++..++
T Consensus       156 A~vf~---P~l~~~~  167 (189)
T cd04393         156 AAVFG---PDVFHVY  167 (189)
T ss_pred             hhhcc---CceeCCC
Confidence            77775   6665543

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.

>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

Probab=99.96  E-value=5e-29  Score=233.03  Aligned_cols=143  Identities=15%  Similarity=0.179  Sum_probs=128.3

Q ss_pred             CCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCC----CCCCHHHHHHHHHHHHhhcC
Q psy8552          17 STTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNF----SKLEPALLAIMLKTYLKSLT   91 (523)
Q Consensus        17 ~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~----~~~d~~~va~lLK~flr~Lp   91 (523)
                      +..||.+|.+|++||+++|    |+++|||||++|+ .++++|+++++++.. .++    ...|+|+||++||.|||+||
T Consensus        19 ~~~iP~iv~~~i~~l~~~g----~~~~eGIFR~~G~~~~i~~l~~~~~~~~~-~~~~~~~~~~d~h~va~lLK~flreLP   93 (190)
T cd04400          19 GRDLPSVVYRCIEYLDKNR----AIYEEGIFRLSGSASVIKQLKERFNTEYD-VDLFSSSLYPDVHTVAGLLKLYLRELP   93 (190)
T ss_pred             CCCCChHHHHHHHHHHHcC----CcCCCCeeeCCCcHHHHHHHHHHHcCCCC-CCccccccccCHHHHHHHHHHHHHhCC
Confidence            5689999999999999995    5899999999965 999999999999853 232    35689999999999999999


Q ss_pred             CCCCChhhHHHHHHHhcCC-ChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhcc
Q psy8552          92 EPLIPYVYYEKFVSLLSGS-NDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTF  166 (523)
Q Consensus        92 ePli~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~  166 (523)
                      +||||.++|+.|+++.+.. +..+++.+++.++.+||+.|+.+|++|+.||++|+++++.|+|+..  ++|.+|++
T Consensus        94 ~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLa~vf~P  167 (190)
T cd04400          94 TLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLR--NVCIVFSP  167 (190)
T ss_pred             cccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChH--HhhhhcCC
Confidence            9999999999999988865 7888999999999999999999999999999999999999888766  77777763

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG0790|consensus

Probab=99.96  E-value=1.2e-28  Score=241.97  Aligned_cols=200  Identities=27%  Similarity=0.458  Sum_probs=172.8

Q ss_pred             CCCccccCCCHHHHHHHhcCC-CCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHHHHh
Q psy8552         214 DAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYK  292 (523)
Q Consensus       214 ~~~wyhg~isr~~Ae~lL~~~-~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~y~  292 (523)
                      +..|||..|+..+||.||+.. .+|+||.|.|+.++|+|+||++.++++.|++|...++.|.+.++.+|.++.+||+||+
T Consensus         3 s~~wfh~~~~g~~ae~Ll~~~g~dgsfl~r~s~sNp~~fsl~~r~~~~v~hikiq~~~~~~~l~~gekfat~~ELvqyym   82 (600)
T KOG0790|consen    3 SRRWFHPDLSGVEAETLLKERGVDGSFLARPSESNPGDFSLSVRRGDKVTHIKIQNSGDFYDLYGGEKFATLAELVQYYM   82 (600)
T ss_pred             chhhcCCCccchhHHHHHHHhccccchhhccccCCCcceeEEEEeCCceEEEEEeecCccccccCCccccchHHHHHHHH
Confidence            468999999999999999974 8999999999999999999999999999999998777788888999999999999999


Q ss_pred             hCC-cccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhhcccchhhhhhhhchhc
Q psy8552         293 HES-LSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRL  371 (523)
Q Consensus       293 ~~~-~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~~~~~l~~~~~e~~ar~  371 (523)
                      .+. .....+|....|++|+...                                                         
T Consensus        83 e~~~~lkekng~~ielK~pl~cA---------------------------------------------------------  105 (600)
T KOG0790|consen   83 EHHGQLKEKNGDVIELKYPLNCA---------------------------------------------------------  105 (600)
T ss_pred             hhhHHHHhcCCCEEEecCCCccC---------------------------------------------------------
Confidence            877 2223456667777776431                                                         


Q ss_pred             cccccccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCCC-CCeEEeecCC-
Q psy8552         372 LYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGRP-DGTFLIRPST-  448 (523)
Q Consensus       372 m~~l~~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~~-~G~FLvR~s~-  448 (523)
                                                                 +-.++.||| .++..+||.+|.+++ .|+||||+|. 
T Consensus       106 -------------------------------------------dptserWfHG~LsgkeAekLl~ekgk~gsfLvReSqs  142 (600)
T KOG0790|consen  106 -------------------------------------------DPTSERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQS  142 (600)
T ss_pred             -------------------------------------------CchhhhhhccCCCchhHHHHHHhcCCCccEEEecccc
Confidence                                                       123446999 999999999997765 8999999999 


Q ss_pred             -CCceEEEEEECC---------eeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccC
Q psy8552         449 -TGQYALSIVCSG---------APKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       449 -~~~~~Ls~~~~~---------~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                       ||.|+||++.+.         +|.|..|...+..|-. +++..|+||.+||+||+++++.+. .|-...|++|...
T Consensus       143 ~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~~kydV-Ggge~F~sltdLidhykknpmvEt-~gtvv~LrqP~na  217 (600)
T KOG0790|consen  143 HPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQEGKYDV-GGGERFDSLTDLVEHYKKNPMVET-LGTVVYLRQPLNA  217 (600)
T ss_pred             CCCceEEEEEcCCcccCCCCccceEEEEEEeccccccc-CCccccchHHHHHHHhccCchhhh-cceeEEeeccccc
Confidence             999999999965         8999999998866655 556899999999999999999984 7888999999874

>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

Probab=99.96  E-value=2.4e-28  Score=230.64  Aligned_cols=141  Identities=18%  Similarity=0.250  Sum_probs=122.8

Q ss_pred             HHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCC--CCCHHHHHHHHHHHHhhcCCCCCChhh
Q psy8552          23 KSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFS--KLEPALLAIMLKTYLKSLTEPLIPYVY   99 (523)
Q Consensus        23 vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~--~~d~~~va~lLK~flr~LpePli~~~~   99 (523)
                      .|.+||+||++      |+++|||||+||+ .++++|++++|+|.. ++++  ++|+|+||++||.|||+||+||||.++
T Consensus        12 ~v~~~i~~l~~------gl~~EGIFR~sGs~~~i~~L~~~~d~~~~-~~~~~~~~~~h~va~lLK~flReLPePLi~~~~   84 (208)
T cd04392          12 QIYQLIEYLEK------NLRVEGLFRKPGNSARQQELRDLLNSGTD-LDLESGGFHAHDCATVLKGFLGELPEPLLTHAH   84 (208)
T ss_pred             HHHHHHHHHHh------CCCCcceeeCCCcHHHHHHHHHHHHcCCC-CCcccccCCHHHHHHHHHHHHHhCCCccCCHHH
Confidence            88999999996      6899999999955 999999999999875 4543  579999999999999999999999999


Q ss_pred             HHHHHHHhc------------CCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccc
Q psy8552         100 YEKFVSLLS------------GSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFV  167 (523)
Q Consensus       100 ~~~~~~~~~------------~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v  167 (523)
                      |+.|+++.+            ..+.+.++.+++.++..||+.|+.+|+||+.||++|+++++.|+|+..  ++|.+|+  
T Consensus        85 y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLAivf~--  160 (208)
T cd04392          85 YPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSAD--NLALLFT--  160 (208)
T ss_pred             HHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCCCHH--HHHHHhC--
Confidence            999988664            234567889999999999999999999999999999999998888765  7777775  


Q ss_pred             cccCCCCC
Q psy8552         168 LPTFSSPP  175 (523)
Q Consensus       168 ~P~~~~pp  175 (523)
                       |++..|+
T Consensus       161 -P~Ll~~~  167 (208)
T cd04392         161 -PHLICPR  167 (208)
T ss_pred             -cccCCCC
Confidence             6776654

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

Probab=99.96  E-value=3.4e-28  Score=228.63  Aligned_cols=160  Identities=21%  Similarity=0.318  Sum_probs=138.5

Q ss_pred             CCCCCcccccCCCC--CCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCC-CHHHH
Q psy8552           4 YAPNLLNKTDNVSS--TTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKL-EPALL   79 (523)
Q Consensus         4 ~~p~~L~~~~~~~~--~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~-d~~~v   79 (523)
                      +.+-+|.....+.+  ..||.+|.+|++||+++     |+++|||||++|+ .+++++++.+|+|.. .+++.+ |+|++
T Consensus         5 ~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~-----g~~~eGIFR~~g~~~~i~~l~~~~~~~~~-~~~~~~~d~~~v   78 (195)
T cd04404           5 QFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAH-----ALTTEGIFRRSANTQVVKEVQQKYNMGEP-VDFDQYEDVHLP   78 (195)
T ss_pred             cCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHc-----CCCCCCeeeCCCcHHHHHHHHHHHhCCCC-CCcccccCHHHH
Confidence            45566766665543  78999999999999998     9999999999955 999999999999865 566676 99999


Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc
Q psy8552          80 AIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTI  159 (523)
Q Consensus        80 a~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~  159 (523)
                      |++||.|||+||+||+|.++|+.|+++... +..+++..++.++.+||+.|+.+|++|+.||.+|+++++.|+|+..  +
T Consensus        79 a~~LK~~lr~Lp~pLi~~~~~~~l~~~~~~-~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~--n  155 (195)
T cd04404          79 AVILKTFLRELPEPLLTFDLYDDIVGFLNV-DKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNS--N  155 (195)
T ss_pred             HHHHHHHHHhCCCccCCHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHh--H
Confidence            999999999999999999999999998765 4677889999999999999999999999999999999998887766  7


Q ss_pred             hhhhhccccccCCCCC
Q psy8552         160 LIQSFTFVLPTFSSPP  175 (523)
Q Consensus       160 l~~~~~~v~P~~~~pp  175 (523)
                      +|.+||   |++..++
T Consensus       156 La~vfa---P~l~~~~  168 (195)
T cd04404         156 LAVVFG---PNLLWAK  168 (195)
T ss_pred             hheeee---ccccCCC
Confidence            777776   5555543

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

Probab=99.96  E-value=2.9e-28  Score=230.68  Aligned_cols=164  Identities=20%  Similarity=0.251  Sum_probs=134.2

Q ss_pred             CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCcc----ceEEecCCh-hHHHHHHHHHhCCCCCC----CCCCCCH
Q psy8552           6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSA----ANLFEPGNA-SQVAELFHAYSGEIKSY----NFSKLEP   76 (523)
Q Consensus         6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~----eGifR~~~~-~~v~~l~~~~~~~~~~~----~~~~~d~   76 (523)
                      +-+|...+.+++..||.+|.+|++||++++.   ++..    +||||++++ +.+++||++||++....    +++++|+
T Consensus         2 Gv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~---~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv   78 (212)
T cd04399           2 GVDLETRCRLDKKVVPLIVSAILSYLDQLYP---DLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEP   78 (212)
T ss_pred             CCcHHHHHhhcCCCCCHHHHHHHHHHHHhCc---cccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCH
Confidence            3467777777888999999999999999732   2333    399999955 99999999999986421    2457899


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhHHHHHHHhc------CCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhh
Q psy8552          77 ALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLS------GSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYA  150 (523)
Q Consensus        77 ~~va~lLK~flr~LpePli~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~  150 (523)
                      |+||++||.||||||+||+|+++|+.|+++..      ..+.++++++++.++..||..|+.+|++|+.||.+|++++..
T Consensus        79 ~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~~~  158 (212)
T cd04399          79 STVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEITKM  158 (212)
T ss_pred             HHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999988653      256789999999999999999999999999999999998766


Q ss_pred             cC-CCCCccchhhhhccccccCCCCC
Q psy8552         151 RG-VREPPTILIQSFTFVLPTFSSPP  175 (523)
Q Consensus       151 n~-m~~~~~~l~~~~~~v~P~~~~pp  175 (523)
                      |. ++|+..++|.+||   |++++|.
T Consensus       159 ~~~~kM~~~nLa~vfg---p~llr~~  181 (212)
T cd04399         159 GESEEEYADKLATSLS---REILRPI  181 (212)
T ss_pred             ccccccCHHHHHHHhh---hhhcCCC
Confidence            64 2244446677775   6776653

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

Probab=99.95  E-value=9.4e-28  Score=223.13  Aligned_cols=145  Identities=21%  Similarity=0.253  Sum_probs=120.0

Q ss_pred             CCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC
Q psy8552          17 STTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLI   95 (523)
Q Consensus        17 ~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~flr~LpePli   95 (523)
                      +..||.+|.+|+++|.+.+    |+++|||||++|+ .+++++++.+|+|.. ......|+|+||++||.|||+||+||+
T Consensus        18 ~~~iP~il~~~i~~l~~~~----gl~~EGIFR~~G~~~~i~~l~~~~d~~~~-~~~~~~d~h~va~lLK~fLReLpePli   92 (187)
T cd04389          18 ELKLPWILTFLSEKVLALG----GFQTEGIFRVPGDIDEVNELKLRVDQWDY-PLSGLEDPHVPASLLKLWLRELEEPLI   92 (187)
T ss_pred             CCCCCchHHHHHHHHHHcC----CCcCCCeeeCCCCHHHHHHHHHHHhcCCC-CccccCCHHHHHHHHHHHHHhCCCCCC
Confidence            4579999999999997654    9999999999955 999999999999865 223456899999999999999999999


Q ss_pred             ChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccccccCCCCC
Q psy8552          96 PYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSSPP  175 (523)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~~~~pp  175 (523)
                      |+++|++|+++..  +.    ..++.++..||+.|+.+|.||+.||.+|++++....++|+..++|.+|+   |++..++
T Consensus        93 ~~~~~~~~i~~~~--~~----~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~---P~l~~~~  163 (187)
T cd04389          93 PDALYQQCISASE--DP----DKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFA---PNILRCT  163 (187)
T ss_pred             CHHHHHHHHHhhc--CH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHc---cccCCCC
Confidence            9999999998763  22    3467789999999999999999999999986543334445558888886   6666553

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

Probab=99.94  E-value=3.5e-26  Score=218.40  Aligned_cols=144  Identities=25%  Similarity=0.364  Sum_probs=124.2

Q ss_pred             CCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hH----HHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhh
Q psy8552          15 VSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQ----VAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKS   89 (523)
Q Consensus        15 ~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~----v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~flr~   89 (523)
                      .....||.+|.+|++||+++     |+++|||||++|+ ..    ++++++.+|+|.. .. ...|+|++|++||.|||+
T Consensus        45 ~~~~~iP~~l~~~i~~L~~~-----gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~-~~-~~~~~~~va~~LK~fLr~  117 (220)
T cd04380          45 EVPLSIPKEIWRLVDYLYTR-----GLAQEGLFEEPGLPSEPGELLAEIRDALDTGSP-FN-SPGSAESVAEALLLFLES  117 (220)
T ss_pred             CCccccCHHHHHHHHHHHHc-----CCcccCcccCCCcccchHHHHHHHHHHHhCCCC-CC-CCCCHHHHHHHHHHHHHh
Confidence            34567999999999999998     8999999999965 77    9999999999865 22 678999999999999999


Q ss_pred             cCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhcccc
Q psy8552          90 LTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQ-DFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVL  168 (523)
Q Consensus        90 LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~  168 (523)
                      |||||||+++|+.|+++.. .+.    ...+.+++ .||+.|+++|.||+.||++|+++++.|+|+..  ++|.+||   
T Consensus       118 LpePlip~~~y~~~~~~~~-~~~----~~~~~ll~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~--nLA~vF~---  187 (220)
T cd04380         118 LPDPIIPYSLYERLLEAVA-NNE----EDKRQVIRISLPPVHRNVFVYLCSFLRELLSESADRGLDEN--TLATIFG---  187 (220)
T ss_pred             CCCCccCHHHHHHHHHHhc-CcH----HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHH--HhHHHhc---
Confidence            9999999999999999872 122    23567788 99999999999999999999999998887766  7888886   


Q ss_pred             ccCCCCC
Q psy8552         169 PTFSSPP  175 (523)
Q Consensus       169 P~~~~pp  175 (523)
                      |++..+|
T Consensus       188 P~Llr~~  194 (220)
T cd04380         188 RVLLRDP  194 (220)
T ss_pred             chhccCC
Confidence            6666554

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas

>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases

Probab=99.94  E-value=9.6e-26  Score=208.62  Aligned_cols=147  Identities=28%  Similarity=0.435  Sum_probs=131.8

Q ss_pred             CCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCC-CCCCCCHHHHHHHHHHHHhhcCCCCCC
Q psy8552          19 TSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSY-NFSKLEPALLAIMLKTYLKSLTEPLIP   96 (523)
Q Consensus        19 ~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~-~~~~~d~~~va~lLK~flr~LpePli~   96 (523)
                      .||.++.+|++||+++     |+++|||||++|+ .+++++++.++++.... ....+|+|++|++||.|||+||+||||
T Consensus         2 ~vP~~l~~~~~~l~~~-----g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~   76 (174)
T smart00324        2 PIPIIVEKCIEYLEKR-----GLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIP   76 (174)
T ss_pred             CCChHHHHHHHHHHHc-----CCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCC
Confidence            5899999999999998     9999999999955 99999999999987522 367889999999999999999999999


Q ss_pred             hhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccccccCCCCC
Q psy8552          97 YVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSSPP  175 (523)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~~~~pp  175 (523)
                      .+.|+.|+++.+..+..+++..++.++..||..|+.+|.+|+.||++|+.+++.|+|+..  ++|.+|+   |.+..++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~--nLa~~f~---P~l~~~~  150 (174)
T smart00324       77 YELYEEFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTAR--NLAIVFG---PTLLRPP  150 (174)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHH--HHHHHHh---cccCCCC
Confidence            999999999998888899999999999999999999999999999999998888877765  7788886   4554443

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.

>KOG4269|consensus

Probab=99.92  E-value=3.3e-25  Score=233.06  Aligned_cols=152  Identities=20%  Similarity=0.325  Sum_probs=133.6

Q ss_pred             CCCCCCCCHHHHHHHHHHh-ccCCCCCCCccceEEecCC-hhHHHHHHHHHhCCC-CC--CCCCCCCHHHHHHHHHHHHh
Q psy8552          14 NVSSTTSPFKSDNLKAASE-HYSKPDCGLSAANLFEPGN-ASQVAELFHAYSGEI-KS--YNFSKLEPALLAIMLKTYLK   88 (523)
Q Consensus        14 ~~~~~~vP~vv~~~i~~l~-~~~~~~~Gl~~eGifR~~~-~~~v~~l~~~~~~~~-~~--~~~~~~d~~~va~lLK~flr   88 (523)
                      .+....+|.||++|++||+ .+     |++.|||||++| +..|++|+++||.+- .+  ...+++|+|+||++||+|||
T Consensus       913 ~~n~s~lP~VVyrCvEyle~~R-----gieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~dVn~IaGlLKLYlR  987 (1112)
T KOG4269|consen  913 KRNVSGLPYVVYRCVEYLESCR-----GIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEMDVNAIAGLLKLYLR  987 (1112)
T ss_pred             eecccCCchHHHHHHHHHHhcc-----ccchhceEEecccHHHHHHHHHHhccccCchhhhccccccHHHHHHHHHHHHH
Confidence            4566789999999999999 55     899999999995 599999999999982 11  22346799999999999999


Q ss_pred             hcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhcccc
Q psy8552          89 SLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVL  168 (523)
Q Consensus        89 ~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~  168 (523)
                      +||+||++.++|..|.+.....++.+..-.++.+|..||++|..++-.|+.||.||++++..|+|+..  +++.+|+   
T Consensus       988 ~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNKMnlr--NlciVFs--- 1062 (1112)
T KOG4269|consen  988 ELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNKMNLR--NLCIVFS--- 1062 (1112)
T ss_pred             hCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhccccccccc--ceeeeec---
Confidence            99999999999999999999889999888999999999999999999999999999999999988877  6777776   


Q ss_pred             ccCCCCC
Q psy8552         169 PTFSSPP  175 (523)
Q Consensus       169 P~~~~pp  175 (523)
                      ||+..|.
T Consensus      1063 PTLniPs 1069 (1112)
T KOG4269|consen 1063 PTLNIPS 1069 (1112)
T ss_pred             ccccCcH
Confidence            6766553

>KOG2200|consensus

Probab=99.92  E-value=6.8e-25  Score=222.79  Aligned_cols=153  Identities=16%  Similarity=0.203  Sum_probs=139.2

Q ss_pred             CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCC--CCCCCCCHHHHHHH
Q psy8552           6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKS--YNFSKLEPALLAIM   82 (523)
Q Consensus         6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~--~~~~~~d~~~va~l   82 (523)
                      +=||...+++.+..+|.+|.+.++||+++     ||+++||||++|. +.|+.|++.++.....  ++++....|++|++
T Consensus       302 GVPL~vll~rtG~~lP~~iQq~m~~lr~~-----~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdl  376 (674)
T KOG2200|consen  302 GVPLTVLLQRTGQPLPLSIQQAMRYLRER-----GLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADL  376 (674)
T ss_pred             ecCceeeeccCCCcCcHHHHHHHHHHHHh-----CccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHH
Confidence            44677778899999999999999999999     9999999999955 9999999999986543  66777789999999


Q ss_pred             HHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhh
Q psy8552          83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQ  162 (523)
Q Consensus        83 LK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~  162 (523)
                      ||.|||+||+||+|.++-+.|+.+.+..+..+++++++.++-.||.+||++|+.|+.||.+|+.+..+|+|+..|.+++.
T Consensus       377 LKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nlsvcm  456 (674)
T KOG2200|consen  377 LKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVCM  456 (674)
T ss_pred             HHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998887544443


Q ss_pred             h
Q psy8552         163 S  163 (523)
Q Consensus       163 ~  163 (523)
                      +
T Consensus       457 A  457 (674)
T KOG2200|consen  457 A  457 (674)
T ss_pred             c
Confidence            3

>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

Probab=99.92  E-value=1.4e-24  Score=199.63  Aligned_cols=144  Identities=24%  Similarity=0.410  Sum_probs=130.5

Q ss_pred             CHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCChhh
Q psy8552          21 PFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVY   99 (523)
Q Consensus        21 P~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~flr~LpePli~~~~   99 (523)
                      |.+|.+|++||+++     |+++|||||++|+ .+++++++.++.+....+...+|+|++|++||.|||+||+||||.+.
T Consensus         1 P~~l~~~~~~l~~~-----~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~   75 (169)
T cd00159           1 PLIIEKCIEYLEKN-----GLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFEL   75 (169)
T ss_pred             ChHHHHHHHHHHHc-----CCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHH
Confidence            88999999999998     8999999999955 89999999999987633567889999999999999999999999999


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccccccCCCC
Q psy8552         100 YEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFSSP  174 (523)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~~~~p  174 (523)
                      |+.|+.+.+..+...++..++.++..||+.|+.+|.+|+.||.+|+.+++.|+|+..  ++|.+|+   |++.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~--nLa~~f~---p~l~~~  145 (169)
T cd00159          76 YDEFIELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTAS--NLAIVFA---PTLLRP  145 (169)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHH--HHHHHHc---cccCCC
Confidence            999999999889999999999999999999999999999999999999888887765  7788886   555444

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.

>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation

Probab=99.92  E-value=8e-25  Score=197.60  Aligned_cols=138  Identities=24%  Similarity=0.356  Sum_probs=125.5

Q ss_pred             CHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCC-CCCCCCHHHHHHHHHHHHhhcCCCCCChh
Q psy8552          21 PFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSY-NFSKLEPALLAIMLKTYLKSLTEPLIPYV   98 (523)
Q Consensus        21 P~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~-~~~~~d~~~va~lLK~flr~LpePli~~~   98 (523)
                      |.+|..|++||+++     |++++||||++|+ .+++++++.++.+.... .++.+|+|+||++||.||++||+||++.+
T Consensus         1 P~~l~~~~~~l~~~-----g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~   75 (151)
T PF00620_consen    1 PRILNDCVDYLEKK-----GLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSE   75 (151)
T ss_dssp             EHHHHHHHHHHHHH-----TTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHH
T ss_pred             ChHHHHHHHHHHHh-----CCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhh
Confidence            88999999999999     8999999999955 99999999999997633 67789999999999999999999999999


Q ss_pred             hHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhc
Q psy8552          99 YYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFT  165 (523)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~  165 (523)
                      +|+.|+++.+..+..++++.++.++..||..|+.+|.+|+.||.+|+++++.|+|+..  ++|.+|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~--~La~~f~  140 (151)
T PF00620_consen   76 LYDKFIAASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAE--NLAIIFA  140 (151)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHH--HHHHHHH
T ss_pred             HHHHHhhhhccchhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHH--HHHHHHH
Confidence            9999999888889999999999999999999999999999999999999998877655  7777776

Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....

>KOG4270|consensus

Probab=99.91  E-value=1.8e-24  Score=225.93  Aligned_cols=156  Identities=22%  Similarity=0.317  Sum_probs=137.0

Q ss_pred             cccccCCCCCCCCHHHHHHHH-HHhccCCCCCCCccceEEecC-ChhHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHH
Q psy8552           9 LNKTDNVSSTTSPFKSDNLKA-ASEHYSKPDCGLSAANLFEPG-NASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTY   86 (523)
Q Consensus         9 L~~~~~~~~~~vP~vv~~~i~-~l~~~~~~~~Gl~~eGifR~~-~~~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f   86 (523)
                      ++..+...++.||.++.-+.+ .+...+    |++.|||||+. .+++++.||++||.|.....+ ..|+|+||++||.|
T Consensus       154 ~Q~s~~~~~n~vp~i~~l~~~~~l~~e~----Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~-~iDvH~~agllKay  228 (577)
T KOG4270|consen  154 MQLSYDPRGNFVPLILHLLQSGRLLLEG----GLKEEGLFRINGEASKVERLREALDCGVVPDQL-YIDVHCLAGLLKAY  228 (577)
T ss_pred             hhcccccCCCcchhhhHhhhhhhhhhhc----CccccceeccCCCchHHHHHHHHHcCCcccccc-cCCHHHHHHHHHHH
Confidence            444555556668999999999 777666    99999999999 779999999999999874334 78999999999999


Q ss_pred             HhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhcc
Q psy8552          87 LKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTF  166 (523)
Q Consensus        87 lr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~  166 (523)
                      |||||+|++|+.+|++|+.+.+..+++++.+.++.++.+||+.|+..|+|+|.||+.|+++++.|+|+..  ++|.+|+ 
T Consensus       229 LRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~--NlAiV~g-  305 (577)
T KOG4270|consen  229 LRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSAR--NLAIVFG-  305 (577)
T ss_pred             HHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchh--hceeEec-
Confidence            9999999999999999999999999999999999999999999999999999999999999999888766  7777776 


Q ss_pred             ccccCCCC
Q psy8552         167 VLPTFSSP  174 (523)
Q Consensus       167 v~P~~~~p  174 (523)
                        |+.+-+
T Consensus       306 --PNl~~~  311 (577)
T KOG4270|consen  306 --PNLLWM  311 (577)
T ss_pred             --CCcccc
Confidence              455333

>KOG4407|consensus

Probab=99.90  E-value=1e-23  Score=227.63  Aligned_cols=143  Identities=19%  Similarity=0.313  Sum_probs=128.9

Q ss_pred             CCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCC---C--CCCHHHHHHHHHHHHhh
Q psy8552          16 SSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNF---S--KLEPALLAIMLKTYLKS   89 (523)
Q Consensus        16 ~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~---~--~~d~~~va~lLK~flr~   89 (523)
                      ..+-||.+|.-|+..+|.+     ||++.||||++|+ ..|.+|++.++++....+.   +  .-|+++|.+|||.|||.
T Consensus      1170 ~n~yVP~iV~~C~~vVEt~-----Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSLLK~F~Rk 1244 (1973)
T KOG4407|consen 1170 CNDYVPMIVQACVCVVETY-----GLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSLLKMFLRK 1244 (1973)
T ss_pred             ccccchHHHHHHHHHHhhc-----CccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHHHHHHHHh
Confidence            4667999999999999999     9999999999955 9999999999998432221   1  22899999999999999


Q ss_pred             cCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhc
Q psy8552          90 LTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFT  165 (523)
Q Consensus        90 LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~  165 (523)
                      |||||+|.++|..||++.+..+.-+|+..|+.+|++||.++|+||++|+.||.+|+.++++|+|...  +||++|+
T Consensus      1245 LPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEpr--NLAi~FG 1318 (1973)
T KOG4407|consen 1245 LPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPR--NLAIMFG 1318 (1973)
T ss_pred             CCcccccccchhhhhhhcccccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccccccccccc--ceeEEec
Confidence            9999999999999999999999999999999999999999999999999999999999999987655  7778886

>KOG3564|consensus

Probab=99.90  E-value=2.9e-23  Score=205.73  Aligned_cols=156  Identities=19%  Similarity=0.288  Sum_probs=139.9

Q ss_pred             cccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8552           9 LNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYL   87 (523)
Q Consensus         9 L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fl   87 (523)
                      |.+.+......||.+|..|+.+||++     ||.+|||||++|. ..+++|+++|-++...+.+...|+|+||++||.||
T Consensus       351 L~DF~~s~aPMIPalVVHCVneIEaR-----GLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFL  425 (604)
T KOG3564|consen  351 LADFAPSTAPMIPALVVHCVNEIEAR-----GLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFL  425 (604)
T ss_pred             hhhhcccccccchHHHHHHHHHHHHc-----cccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHH
Confidence            56666677788999999999999999     9999999999955 99999999999998877778889999999999999


Q ss_pred             hhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccc
Q psy8552          88 KSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFV  167 (523)
Q Consensus        88 r~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v  167 (523)
                      |+|.|||||..+..+|++|+.+.|++..+.++-..+..||..||+||.|||-|+.+|++ +..++|+..  ++|.+|+  
T Consensus       426 R~LkePLip~~~~rdf~eAa~~tD~dn~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~--nlA~ifg--  500 (604)
T KOG3564|consen  426 RNLKEPLIPFRLRRDFMEAAEITDEDNSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVA--NLARIFG--  500 (604)
T ss_pred             HhcccccccchHHHHHHHHhcCCCchhHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHH--HHHHHhc--
Confidence            99999999999999999999999999999999999999999999999999999999988 556666655  6777775  


Q ss_pred             cccCCCCC
Q psy8552         168 LPTFSSPP  175 (523)
Q Consensus       168 ~P~~~~pp  175 (523)
                       |++...+
T Consensus       501 -Ptivgh~  507 (604)
T KOG3564|consen  501 -PTIVGHA  507 (604)
T ss_pred             -chhhccC
Confidence             7776654

>KOG1450|consensus

Probab=99.89  E-value=4e-23  Score=216.16  Aligned_cols=157  Identities=20%  Similarity=0.295  Sum_probs=140.8

Q ss_pred             CCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCC---CCCHHHHHHH
Q psy8552           7 NLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFS---KLEPALLAIM   82 (523)
Q Consensus         7 ~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~---~~d~~~va~l   82 (523)
                      -+|...+++++..||.+|.+|++.|+.+     |++.+||||++++ ..|.+|+.++|.+.. .++.   ..|+|+|+++
T Consensus       459 s~Lealc~rE~~~vP~~V~~c~~~IE~~-----GLd~~GiYRVsgnl~~Vnklr~~~d~d~~-l~l~~~~~~dihai~ga  532 (650)
T KOG1450|consen  459 SPLEALCQRENGLVPKIVRLCIEHIEKF-----GLDSDGIYRVSGNLASVNKLREQSDQDNS-LDLADDRWDDIHAITGA  532 (650)
T ss_pred             ccHHHHhhccCCCcchHHHHHHHHHhhh-----cccCCceeeecchHHHHHHHHHhcCcccc-ccccccchhHHHHHHHH
Confidence            3577788999999999999999999999     9999999999966 999999999996543 3433   3479999999


Q ss_pred             HHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhh
Q psy8552          83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQ  162 (523)
Q Consensus        83 LK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~  162 (523)
                      ||+||||||+||++..+..+|..+.+......+..+...++..||..|+.||+||+.||++|.+|+..|+|+..  ++|+
T Consensus       533 lK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~--NLaI  610 (650)
T KOG1450|consen  533 LKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRH--NLAI  610 (650)
T ss_pred             HHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhcccccccccc--ceEE
Confidence            99999999999999999999999999989999999999999999999999999999999999999999988766  6777


Q ss_pred             hhccccccCCCC
Q psy8552         163 SFTFVLPTFSSP  174 (523)
Q Consensus       163 ~~~~v~P~~~~p  174 (523)
                      +|+   ||+..|
T Consensus       611 Vfg---pTl~~~  619 (650)
T KOG1450|consen  611 VFG---PTLIKP  619 (650)
T ss_pred             Eec---cccccc
Confidence            776   666653

>KOG2710|consensus

Probab=99.89  E-value=7.4e-23  Score=205.86  Aligned_cols=130  Identities=18%  Similarity=0.283  Sum_probs=122.5

Q ss_pred             CCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCC----CCCCCCCCCHHHHHHHHHHHHhhcC
Q psy8552          17 STTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEI----KSYNFSKLEPALLAIMLKTYLKSLT   91 (523)
Q Consensus        17 ~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~----~~~~~~~~d~~~va~lLK~flr~Lp   91 (523)
                      -..||.+|.+|++||+++     |+.+.||||+.|+ .+|++|++.||++.    ...+++++++|+||+|||.|||+||
T Consensus        91 ~~~IP~vv~~c~~~lk~~-----~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp  165 (412)
T KOG2710|consen   91 EGQIPRVVAKCGQYLKKN-----GLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLP  165 (412)
T ss_pred             ceeCcHHHHHHHHHHHHc-----CceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCC
Confidence            446999999999999999     9999999999955 99999999999983    4467788899999999999999999


Q ss_pred             CCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhc
Q psy8552          92 EPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYAR  151 (523)
Q Consensus        92 ePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n  151 (523)
                      +||||.++|+.|+..+....+.+++..++.++..||..|+.+|.+|+.||+.++.+++.|
T Consensus       166 ~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~  225 (412)
T KOG2710|consen  166 DPLLPLELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDN  225 (412)
T ss_pred             cccCCHHHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccc
Confidence            999999999999999999888899999999999999999999999999999999999888

>KOG4278|consensus

Probab=99.88  E-value=2.9e-23  Score=212.64  Aligned_cols=168  Identities=21%  Similarity=0.331  Sum_probs=146.8

Q ss_pred             CCcCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHH
Q psy8552         207 PETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVV  285 (523)
Q Consensus       207 ~~~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~  285 (523)
                      ....+|+.+.||||.+||.+||.+|....+|+||||+|++.+|.|+||+|+.|+|.||+|.. .+|+.|+.....|.+|.
T Consensus       144 tPvNSLeKhsWYHGpvSRsaaEy~LsSgInGSFLVRESEsSpgQ~sISlRyeGRVyHYRINt~~dgK~yvt~EsrF~TLa  223 (1157)
T KOG4278|consen  144 TPVNSLEKHSWYHGPVSRSAAEYILSSGINGSFLVRESESSPGQYSISLRYEGRVYHYRINTDNDGKMYVTQESRFRTLA  223 (1157)
T ss_pred             ccccchhhcccccCccccchhhhhhhcCcccceEEeeccCCCcceeEEEEecceEEEEEeeccCCccEEEeehhhhhHHH
Confidence            44788999999999999999999999999999999999999999999999999999999996 68888888888999999


Q ss_pred             HHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCccccccc-----ccCccc--------hhHHHHH
Q psy8552         286 ELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTF-----SEPFKF--------TSVVELI  352 (523)
Q Consensus       286 ~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~--------~~~~~av  352 (523)
                      |||+|+.+..+     ||.+.|.+|.++.....+.. ..-+.++|++.+.+++.     .|+||+        -...|||
T Consensus       224 ELVHHHStvAD-----GLittLhYPApK~nKptvyg-vSPn~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAV  297 (1157)
T KOG4278|consen  224 ELVHHHSTVAD-----GLITTLHYPAPKKNKPTVYG-VSPNADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAV  297 (1157)
T ss_pred             HHHhhcccccc-----ceeEeeeccCccCCCCceee-ecCCcchhhccchheeeeeccCCCcccceeeeeeeccceeeeh
Confidence            99999999885     89999999999865555432 23445899988877766     667887        4668999


Q ss_pred             Hhhcccch--hhhhhhhchhcccccc-cccccc
Q psy8552         353 NYYKHESL--SQYNSTLDTRLLYPVS-RFSSDV  382 (523)
Q Consensus       353 k~~~~~~l--~~~~~e~~ar~m~~l~-~~~~~l  382 (523)
                      |+++.+.|  ++|++|  |-+|+.++ ||++++
T Consensus       298 KtLKEDtMeveEFLkE--AAvMKeikHpNLVqL  328 (1157)
T KOG4278|consen  298 KTLKEDTMEVEEFLKE--AAVMKEIKHPNLVQL  328 (1157)
T ss_pred             hhhhhcchhHHHHHHH--HHHHHhhcCccHHHH
Confidence            99998866  569999  89999999 999999

>KOG1117|consensus

Probab=99.87  E-value=2.5e-22  Score=210.52  Aligned_cols=151  Identities=19%  Similarity=0.314  Sum_probs=138.0

Q ss_pred             CCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCC--CHHHHHHHH
Q psy8552           7 NLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKL--EPALLAIML   83 (523)
Q Consensus         7 ~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~--d~~~va~lL   83 (523)
                      +.|+.+ +.+++.||+||.+||.|+.++     ||.+|||||.+|. .++..|.+.|-+++..+.+...  .+.+|+++|
T Consensus       715 t~Lqeq-qLs~~dIPvIVd~CI~FVTqy-----Gl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvL  788 (1186)
T KOG1117|consen  715 TALQEQ-QLSKNDIPVIVDSCIAFVTQY-----GLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVL  788 (1186)
T ss_pred             chhhhh-hccCCCCcEehHHHHHHHHHh-----CccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHH
Confidence            345555 567889999999999999999     8999999999966 9999999999998876666655  488999999


Q ss_pred             HHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhh
Q psy8552          84 KTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQS  163 (523)
Q Consensus        84 K~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~  163 (523)
                      |+|||+|++||+|.++|..|++++..+++++++..+..+|..||..||.||+.||.||++|..++..|+|+..  ++|.+
T Consensus       789 k~FlrdlddpLft~~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvh--NLAlV  866 (1186)
T KOG1117|consen  789 KRFLRDLDDPLFTKELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVH--NLALV  866 (1186)
T ss_pred             HHHHHhCCccccchhhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998877  77777


Q ss_pred             hc
Q psy8552         164 FT  165 (523)
Q Consensus       164 ~~  165 (523)
                      |+
T Consensus       867 Fa  868 (1186)
T KOG1117|consen  867 FA  868 (1186)
T ss_pred             hh
Confidence            76

>KOG2996|consensus

Probab=99.85  E-value=7.3e-22  Score=199.58  Aligned_cols=178  Identities=22%  Similarity=0.344  Sum_probs=146.3

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHH
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELI  288 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV  288 (523)
                      ...+..++||.|.|-|..||..|+++++|+||||.+....+.|.+|+++++.|+|++|...+|.++|.+...|+|+.|||
T Consensus       679 ~~d~s~~~WyaG~MERaqaes~Lk~~~ngT~LVR~r~kea~e~AISikynnevKHikI~~~dg~~~i~E~k~F~sl~ELV  758 (865)
T KOG2996|consen  679 PTDYSEFPWYAGEMERAQAESTLKNRPNGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETNDGKVHITEDKKFNSLVELV  758 (865)
T ss_pred             ccchhhhhhhcchHhhhhhhhHhhcCCCceEEEEecccchhheeEEEEeccccceEEEEecCCeEEechhhhhhhHHHHH
Confidence            34566789999999999999999999999999999987788999999999999999999999999999999999999999


Q ss_pred             HHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhhcccchhhhhhhhc
Q psy8552         289 NYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLD  368 (523)
Q Consensus       289 ~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~~~~~l~~~~~e~~  368 (523)
                      +||+.+++......|.+.|+.|+..+...... ........+.-+...++.+.+|.+.                      
T Consensus       759 eyYq~~sLke~Fk~LDTtLk~Pyke~e~sa~~-~~~~~~~sv~s~~~~g~AvarYdf~----------------------  815 (865)
T KOG2996|consen  759 EYYQSHSLKEIFKALDTTLKFPYKEPEHSAGQ-RGNRAGNSVLSPKVVGTAVARYDFC----------------------  815 (865)
T ss_pred             HHHHhccHHHHHHHhhhhhcCCCcChhhhhhh-ccccccccccCcceeeeeeeccccC----------------------
Confidence            99999999888888999999999876655433 0111222333445555556666553                      


Q ss_pred             hhcccccc---cccccc--ccccccchhHHHhhhhhcccccccccCCC
Q psy8552         369 TRLLYPVS---RFSSDV--DADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       369 ar~m~~l~---~~~~~l--~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      ||.|+.|+   .|++++  ....+..||+++++.  ..|++|++|+.+
T Consensus       816 ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevng--rvGwFPstYVee  861 (865)
T KOG2996|consen  816 ARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNG--RVGWFPSTYVEE  861 (865)
T ss_pred             CCchhhcccccCCEEEEehhccccCceecceecC--cccccccccccc
Confidence            57788887   799999  456678999998876  689999999765

>KOG1451|consensus

Probab=99.85  E-value=1.4e-20  Score=190.63  Aligned_cols=131  Identities=21%  Similarity=0.233  Sum_probs=118.0

Q ss_pred             CHHHHHHHHHHhccCCCCCCCccceEEecC-ChhHHHHHHHHHhCC----CCCCCC-CCCCHHHHHHHHHHHHhhcCCCC
Q psy8552          21 PFKSDNLKAASEHYSKPDCGLSAANLFEPG-NASQVAELFHAYSGE----IKSYNF-SKLEPALLAIMLKTYLKSLTEPL   94 (523)
Q Consensus        21 P~vv~~~i~~l~~~~~~~~Gl~~eGifR~~-~~~~v~~l~~~~~~~----~~~~~~-~~~d~~~va~lLK~flr~LpePl   94 (523)
                      =.+|++||..|+.+     |++++|+||.. .+++|++|...+-..    +...+. +++|+.+|.+.||.|||.|||||
T Consensus       389 F~fvrkCI~i~Et~-----GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPL  463 (812)
T KOG1451|consen  389 FEFVRKCIDILETS-----GIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPL  463 (812)
T ss_pred             HHHHHHHHHHHHhc-----CcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchh
Confidence            46899999999999     78888899999 669999999876442    122333 67899999999999999999999


Q ss_pred             CChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy8552          95 IPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREP  156 (523)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~  156 (523)
                      ++++++..||.|++..|..-|+.+++.++.+||+.||.+|.-||.||.+|+.|+.+|.|+..
T Consensus       464 MTY~LHk~FI~AAKsdnq~yRv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVS  525 (812)
T KOG1451|consen  464 MTYELHKVFINAAKSDNQTYRVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVS  525 (812)
T ss_pred             hHHHHHHHHHHHHhccchhhhHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhccccccc
Confidence            99999999999999999999999999999999999999999999999999999998888766

>KOG4406|consensus

Probab=99.84  E-value=7.6e-21  Score=186.94  Aligned_cols=160  Identities=20%  Similarity=0.278  Sum_probs=136.1

Q ss_pred             CCCCcccccC--CCCCCCCHHHHHHHHHHhccCCCCCC-CccceEEecC-ChhHHHHHHHHHhCCCCCCCCCCCC-HHHH
Q psy8552           5 APNLLNKTDN--VSSTTSPFKSDNLKAASEHYSKPDCG-LSAANLFEPG-NASQVAELFHAYSGEIKSYNFSKLE-PALL   79 (523)
Q Consensus         5 ~p~~L~~~~~--~~~~~vP~vv~~~i~~l~~~~~~~~G-l~~eGifR~~-~~~~v~~l~~~~~~~~~~~~~~~~d-~~~v   79 (523)
                      +..+|.-...  .++..||.+|..|+++|.++     | +.+||+||.| +.+.++++++.+++|+. ++++.+. +|..
T Consensus       254 FgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~-----~kl~tEG~FRrS~s~~~i~~~q~~~n~G~p-Vdle~~~~~h~~  327 (467)
T KOG4406|consen  254 FGVPLQFIPEKNPEGESIPPIVRSTVEYLQAH-----GKLTTEGLFRRSASRSPIREVQELYNTGEP-VDLEVYKDLHAP  327 (467)
T ss_pred             cCccHHHhcccCcccCCCCcHHHHHhhhhhcc-----ceecccceeccccCccchHHHHHHhcCCCc-ccHHHhccchhh
Confidence            3444444333  35889999999999999999     7 9999999999 44999999999999997 7998885 9999


Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcc
Q psy8552          80 AIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQD-FPAHHFSALRYLMAHLARMCALQYARGVREPPT  158 (523)
Q Consensus        80 a~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~  158 (523)
                      |.+||.|||+||+||++.++|+.+.... ..+..++....+.+++. ||+.|+.++++++.||.+|++++.+|+|+.+  
T Consensus       328 avllKtF~R~LpePL~t~~~y~~lt~~~-~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~s--  404 (467)
T KOG4406|consen  328 AVLLKTFLRSLPEPLLTFRLYESLTGFS-NVDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTAS--  404 (467)
T ss_pred             HHHHHHHHhcCCcccchhhhhhhhhccc-cchHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccc--
Confidence            9999999999999999999999887665 44667888889999997 9999999999999999999999999998875  


Q ss_pred             chhhhhc--cccccCCC
Q psy8552         159 ILIQSFT--FVLPTFSS  173 (523)
Q Consensus       159 ~l~~~~~--~v~P~~~~  173 (523)
                      ++|.+|+  ++||..++
T Consensus       405 NLa~vfGpnl~w~~~~s  421 (467)
T KOG4406|consen  405 NLAVVFGPNLLWAQDES  421 (467)
T ss_pred             cceeeeccccccccccc
Confidence            6666666  44555433

>KOG1453|consensus

Probab=99.83  E-value=1.6e-20  Score=211.64  Aligned_cols=159  Identities=24%  Similarity=0.361  Sum_probs=140.7

Q ss_pred             CCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Q psy8552           7 NLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKT   85 (523)
Q Consensus         7 ~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~   85 (523)
                      ..|..........||.++.+|+.+|+.|     |+.+|||||++|. .+++.|.+.|+.+...+.+.+.|+|+++++||+
T Consensus       605 ~~l~~~~~~e~~~vP~i~~~c~~~ie~~-----~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~  679 (918)
T KOG1453|consen  605 VSLSELARYEPSTVPFILKKCLREIEAH-----LLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKL  679 (918)
T ss_pred             HHHHHhhccCCCCCCHHHHHHHHHHHHh-----hhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHH
Confidence            3345555667889999999999999999     9999999999965 889999999999886678889999999999999


Q ss_pred             HHhhcCCCCCChhhHHHHHHHhcC-CChH-----HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc
Q psy8552          86 YLKSLTEPLIPYVYYEKFVSLLSG-SNDR-----HIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTI  159 (523)
Q Consensus        86 flr~LpePli~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~  159 (523)
                      |||+||+|||++.+|+.|+.+.+. ...+     +.+..+..++..||+.|+++|++|+.||.+|+.++..|+|+..  +
T Consensus       680 yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~--n  757 (918)
T KOG1453|consen  680 YLRKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPK--N  757 (918)
T ss_pred             HHHhccccccccchHHHHHhhhccccccccccccccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCC--C
Confidence            999999999999999999999987 3333     5899999999999999999999999999999999999998877  6


Q ss_pred             hhhhhccccccCCCCC
Q psy8552         160 LIQSFTFVLPTFSSPP  175 (523)
Q Consensus       160 l~~~~~~v~P~~~~pp  175 (523)
                      ++.+|+   |++.+||
T Consensus       758 laivF~---Ptllr~~  770 (918)
T KOG1453|consen  758 LAIVFA---PTLLRPP  770 (918)
T ss_pred             cccccc---CcccCCC
Confidence            666675   7776664

>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr)

Probab=99.83  E-value=4.7e-20  Score=152.47  Aligned_cols=93  Identities=38%  Similarity=0.665  Sum_probs=83.5

Q ss_pred             CccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCC-CCccCCHHHHHHHHhhC
Q psy8552         216 EWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSE-PFKFTSVVELINYYKHE  294 (523)
Q Consensus       216 ~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~-~~~F~sl~~LV~~y~~~  294 (523)
                      +||||.|+|++||++|.+.++|+||||.|++.++.|+||++.+++++|++|...++++++.. ...|+||.+||+||+.+
T Consensus         1 ~w~~g~i~r~~Ae~~L~~~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~f~sl~eLv~~y~~~   80 (94)
T cd00173           1 PWYHGPISREEAEELLKKKPDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDGYYLLGEGRSFPSLPELIEHYQKN   80 (94)
T ss_pred             CccccCCCHHHHHHHHhcCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCCeEEecCCCccCCHHHHHHHHhhC
Confidence            69999999999999999888999999999977899999999999999999998767666654 78999999999999998


Q ss_pred             CcccCCCCcceeecccc
Q psy8552         295 SLSQYNSTLDTRLLYPV  311 (523)
Q Consensus       295 ~~~~~~~~l~~~L~~p~  311 (523)
                      ++   ..++++.|+.|+
T Consensus        81 ~~---~~~~~~~L~~p~   94 (94)
T cd00173          81 PL---SDGLGVKLRYPV   94 (94)
T ss_pred             cc---CCCcccEeCCcC
Confidence            86   346788998885

SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.

>smart00252 SH2 Src homology 2 domains

Probab=99.82  E-value=1.2e-19  Score=146.83  Aligned_cols=82  Identities=38%  Similarity=0.696  Sum_probs=76.2

Q ss_pred             CCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeC-CeEEeCCCCccCCHHHHHHHHhh
Q psy8552         215 AEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRN-GRYGFSEPFKFTSVVELINYYKH  293 (523)
Q Consensus       215 ~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~-~~~~~~~~~~F~sl~~LV~~y~~  293 (523)
                      ++||||.|+|++||++|.+.++|+||||.|++.++.|+||++.++.++||+|...+ |.|++.+...|+||.+||+||+.
T Consensus         1 ~~w~~g~i~r~~Ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~~~~l~~~~~F~sl~eLI~~y~~   80 (84)
T smart00252        1 QPWYHGFISREEAEKLLKNEGDGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDGKFYLDGGRKFPSLVELVEHYQK   80 (84)
T ss_pred             CCeecccCCHHHHHHHHhcCCCcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCCcEEECCCCccCCHHHHHHHHhh
Confidence            48999999999999999998899999999998889999999999999999999865 78999878999999999999998


Q ss_pred             CCc
Q psy8552         294 ESL  296 (523)
Q Consensus       294 ~~~  296 (523)
                      +++
T Consensus        81 ~~~   83 (84)
T smart00252       81 NSL   83 (84)
T ss_pred             CCC
Confidence            764

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.

>KOG0197|consensus

Probab=99.81  E-value=5.4e-20  Score=188.08  Aligned_cols=168  Identities=26%  Similarity=0.399  Sum_probs=139.6

Q ss_pred             CCcCCCCCCCccccCCCHHHHHHHhcCC--CCceEEEEcCCCCCCcEEEEEEECC------eeEEEEEEE-eCCeEE--e
Q psy8552         207 PETNSLRDAEWYWGDISRDDVNDKLADT--ADGTFLVRDTSTKNGEYTLTLRKGG------TNKLIKIFH-RNGRYG--F  275 (523)
Q Consensus       207 ~~~~~l~~~~wyhg~isr~~Ae~lL~~~--~~G~FLVR~s~~~~g~f~LSv~~~~------~v~h~~I~~-~~~~~~--~  275 (523)
                      +...+++.++||+|.|||++||+.|...  ..|+||||+|++.+|+|+||++...      .+.||+|.. ++|+++  +
T Consensus        73 ~~~~~l~~~~Wf~~~isR~~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~~~~~~~~~  152 (468)
T KOG0197|consen   73 PAFIKLSDEPWFFGKISREEAERQLLAPENKEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLDGGGLYPYI  152 (468)
T ss_pred             CCccccccCCchhccccHHHHHHhhcCCCCCccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcCCCCeecCC
Confidence            3357788999999999999999877654  5599999999999999999999655      899999997 566677  8


Q ss_pred             CCCCccCCHHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCccccccc-----ccCccc-----
Q psy8552         276 SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTF-----SEPFKF-----  345 (523)
Q Consensus       276 ~~~~~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~-----  345 (523)
                      .....|+++.+||+||+.++.     +++..|..|+....+..+. ......+.|++++....+     .|+||+     
T Consensus       153 ~~~~~F~~l~~lv~~~~~~~~-----gl~~~l~~p~~~~~~~~p~-~~~~~~d~wei~r~~l~l~~~LG~G~FG~V~~g~  226 (468)
T KOG0197|consen  153 DERELFSSLQQLVNYYSKNAD-----GLCTRLRDPCSKQGHTKPQ-TPDLARDPWEIPREELKLIRELGSGQFGEVWLGK  226 (468)
T ss_pred             CHHHhhhhHHHHHhhhhccCc-----chhhcccCchhccCCCCCC-CCccccCCeeecHHHHHHHHHhcCCccceEEEEE
Confidence            888889999999999999985     8899999999875433222 123337889999987777     778888     


Q ss_pred             --hhHHHHHHhhcccchhh--hhhhhchhcccccc-cccccc
Q psy8552         346 --TSVVELINYYKHESLSQ--YNSTLDTRLLYPVS-RFSSDV  382 (523)
Q Consensus       346 --~~~~~avk~~~~~~l~~--~~~e~~ar~m~~l~-~~~~~l  382 (523)
                        ....||+|+++..+|..  |.+|  |.+|++|+ ++++++
T Consensus       227 ~~~~~~vavk~ik~~~m~~~~f~~E--a~iMk~L~H~~lV~l  266 (468)
T KOG0197|consen  227 WNGSTKVAVKTIKEGSMSPEAFLRE--AQIMKKLRHEKLVKL  266 (468)
T ss_pred             EcCCCcccceEEeccccChhHHHHH--HHHHHhCcccCeEEE
Confidence              45589999999877753  8888  89999999 999999

>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr)

Probab=99.79  E-value=6.4e-19  Score=145.70  Aligned_cols=91  Identities=42%  Similarity=0.710  Sum_probs=84.3

Q ss_pred             cccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhC
Q psy8552         420 TWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAAN  496 (523)
Q Consensus       420 ~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~  496 (523)
                      +||| .|+|++||++|+++++|+||||.|.  ++.|+||++.+++++||+|...++++++......|+||.|||+||+.+
T Consensus         1 ~w~~g~i~r~~Ae~~L~~~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~f~sl~eLv~~y~~~   80 (94)
T cd00173           1 PWYHGPISREEAEELLKKKPDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDGYYLLGEGRSFPSLPELIEHYQKN   80 (94)
T ss_pred             CccccCCCHHHHHHHHhcCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCCeEEecCCCccCCHHHHHHHHhhC
Confidence            6999 9999999999999889999999998  899999999999999999999998888876567999999999999999


Q ss_pred             CccccCCccceeecccc
Q psy8552         497 SLEEHNDDLKTTLAYPV  513 (523)
Q Consensus       497 ~l~~~~~~l~~~L~~pv  513 (523)
                      ++   .+++++.|+.||
T Consensus        81 ~~---~~~~~~~L~~p~   94 (94)
T cd00173          81 PL---SDGLGVKLRYPV   94 (94)
T ss_pred             cc---CCCcccEeCCcC
Confidence            87   377899999986

SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.

>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []

Probab=99.79  E-value=3.2e-19  Score=141.77  Aligned_cols=75  Identities=39%  Similarity=0.657  Sum_probs=70.8

Q ss_pred             ccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCe-EEeCCCCccCCHHHHHHHH
Q psy8552         217 WYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGR-YGFSEPFKFTSVVELINYY  291 (523)
Q Consensus       217 wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~-~~~~~~~~F~sl~~LV~~y  291 (523)
                      ||||.|+|++||++|++ .++|+||||.|.+.+|.|+||++.+++++|++|.+.+++ |++.+...|+||.+||+||
T Consensus         1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y   77 (77)
T PF00017_consen    1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENGGYFLSDGKKFPSLSDLVEHY   77 (77)
T ss_dssp             TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTSEEESSTSSEBSSHHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecCCceEEccCCCcCCCHHHHHHhC
Confidence            99999999999999999 899999999999888999999999999999999986555 8888888999999999998

Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....

>KOG4792|consensus

Probab=99.77  E-value=1.3e-18  Score=157.50  Aligned_cols=164  Identities=20%  Similarity=0.274  Sum_probs=120.5

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEe--------CCeEEeCCCCc
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR--------NGRYGFSEPFK  280 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~--------~~~~~~~~~~~  280 (523)
                      .++.+...||+|.|||++|.++|+++..|.||||+|++.+|+|+|||+-+.+|.||.|...        ...|.|++ ..
T Consensus         5 FD~~er~swYfg~mSRqeA~~lL~~~r~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rIgd-Q~   83 (293)
T KOG4792|consen    5 FDSSERSSWYFGPMSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRIGD-QE   83 (293)
T ss_pred             cChhhccceecCcccHHHHHHHhcCcceeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeeecc-cc
Confidence            3445678999999999999999999889999999999999999999999999999999861        12677775 88


Q ss_pred             cCCHHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCccccccccc-CccchhHHHHHHhhcccc
Q psy8552         281 FTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSE-PFKFTSVVELINYYKHES  359 (523)
Q Consensus       281 F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~avk~~~~~~  359 (523)
                      |++|..|++||+-+-+.      .+.|+.|.+|....          ..+++.....++++ .|.+..          + 
T Consensus        84 Fd~lPaLL~fykihyLd------tttLi~p~~r~~~~----------~~~~~~~~~~~~vr~~fdF~G----------~-  136 (293)
T KOG4792|consen   84 FDSLPALLEFYKIHYLD------TTTLIEPAKRSRQG----------SGVILRQEEAEYVRALFDFNG----------N-  136 (293)
T ss_pred             ccchHHHHhheeEeeec------cccccccccccccc----------cCcccchhhhhheeeeeccCC----------C-
Confidence            99999999999998873      46788888874331          12233333334433 333311          0 


Q ss_pred             hhhhhhhhchhcccccc-ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552         360 LSQYNSTLDTRLLYPVS-RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS  410 (523)
Q Consensus       360 l~~~~~e~~ar~m~~l~-~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~  410 (523)
                           .|   .. .+++ .++..+++..+..||.+|... +..|.+|.+|++
T Consensus       137 -----de---eD-LPFkkGeiL~I~~K~eeqWW~Arns~-Gk~GmIPvpYVe  178 (293)
T KOG4792|consen  137 -----DE---ED-LPFKKGEILRIRDKPEEQWWNARNSE-GKRGMIPVPYVE  178 (293)
T ss_pred             -----cc---cc-CCcccCcEEEEecCcHHHhhhhhccC-CcccceechHHH
Confidence                 00   00 1222 567777777888999988654 578999988854

>KOG4278|consensus

Probab=99.75  E-value=1.9e-18  Score=177.67  Aligned_cols=124  Identities=25%  Similarity=0.361  Sum_probs=111.4

Q ss_pred             ccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCe
Q psy8552         385 DIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGA  461 (523)
Q Consensus       385 ~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~  461 (523)
                      +.+.+|-.+|...  .+|++|+||+.+.- +++...||| .++|..||.+|..--+|+||||+|+  +|.|+||++++|+
T Consensus       121 N~NgEWcEartKN--GqGWVPSNyItPvN-SLeKhsWYHGpvSRsaaEy~LsSgInGSFLVRESEsSpgQ~sISlRyeGR  197 (1157)
T KOG4278|consen  121 NKNGEWCEARTKN--GQGWVPSNYITPVN-SLEKHSWYHGPVSRSAAEYILSSGINGSFLVRESESSPGQYSISLRYEGR  197 (1157)
T ss_pred             cCCCcceeecccC--CCcccccccccccc-chhhcccccCccccchhhhhhhcCcccceEEeeccCCCcceeEEEEecce
Confidence            4566888888633  45999999999877 899999999 9999999999986669999999999  9999999999999


Q ss_pred             eEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552         462 PKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       462 v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      |+||+|..+.+|..|+.....|.+|.|||+||+...     |||.|+|.||.++-
T Consensus       198 VyHYRINt~~dgK~yvt~EsrF~TLaELVHHHStvA-----DGLittLhYPApK~  247 (1157)
T KOG4278|consen  198 VYHYRINTDNDGKMYVTQESRFRTLAELVHHHSTVA-----DGLITTLHYPAPKK  247 (1157)
T ss_pred             EEEEEeeccCCccEEEeehhhhhHHHHHHhhccccc-----cceeEeeeccCccC
Confidence            999999999988877777789999999999999984     99999999999874

>KOG0197|consensus

Probab=99.74  E-value=3.8e-18  Score=174.59  Aligned_cols=132  Identities=22%  Similarity=0.263  Sum_probs=114.3

Q ss_pred             cccccccccchhHHHhhhhhcccccccccCCCC-----CCCCCCCcccc-cCCHHHHHHHhcCC--CCCeEEeecCC--C
Q psy8552         380 SDVDADIHSNDVDKYINLKIAFTNLSGAVASTV-----DFESGEKTWLV-RMSRAQAEALLSGR--PDGTFLIRPST--T  449 (523)
Q Consensus       380 ~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~-----~~~~~~~~W~~-~isr~~Ae~~L~~~--~~G~FLvR~s~--~  449 (523)
                      ..+..+.+.+||.+|..+....||+|+|+++..     +..+..++||+ .|+|.+||+.|...  ..|+||||+|+  +
T Consensus        37 ~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~~~~~~~~l~~~~Wf~~~isR~~ae~~ll~p~~~~G~flvR~se~~~  116 (468)
T KOG0197|consen   37 LILLETTNGDWWRARSLQLGQEGYIPSNYVARNRGSPAFIKLSDEPWFFGKISREEAERQLLAPENKEGAFLVRESESDK  116 (468)
T ss_pred             EEeeccCChhHHHHHHhhcCCCCcCcCceeeccccCCCccccccCCchhccccHHHHHHhhcCCCCCccceeeecccCCc
Confidence            445677789999999999999999999998754     12689999999 99999999766543  46999999997  9


Q ss_pred             CceEEEEEECC------eeEEEEEEEeCCcEEE--ecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552         450 GQYALSIVCSG------APKHCLVYETERGFGF--AEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       450 ~~~~Ls~~~~~------~v~h~~I~~~~~~~~~--~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      |.|+||++...      .|+||+|...+++.++  ......|++|.+||+||+.++     +|+++.|+.||.+.
T Consensus       117 g~yslsv~~~~~~~~~~~v~hyri~~~~~~~~~~~~~~~~~F~~l~~lv~~~~~~~-----~gl~~~l~~p~~~~  186 (468)
T KOG0197|consen  117 GDYSLSVREGDSGGLGAKVKHYRIRQLDGGGLYPYIDERELFSSLQQLVNYYSKNA-----DGLCTRLRDPCSKQ  186 (468)
T ss_pred             CCeeEEEEeccccCCccceeeeeeeEcCCCCeecCCCHHHhhhhHHHHHhhhhccC-----cchhhcccCchhcc
Confidence            99999999865      9999999999887555  666689999999999999996     99999999999873

>KOG0194|consensus

Probab=99.74  E-value=4.6e-18  Score=176.41  Aligned_cols=153  Identities=25%  Similarity=0.353  Sum_probs=124.2

Q ss_pred             CCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCc---E-EEEEEEC--CeeEEEEEEEeCCeEEeCCCCccCC
Q psy8552         210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGE---Y-TLTLRKG--GTNKLIKIFHRNGRYGFSEPFKFTS  283 (523)
Q Consensus       210 ~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~---f-~LSv~~~--~~v~h~~I~~~~~~~~~~~~~~F~s  283 (523)
                      ..+..++||||.|.|++|+.+|.+  +|+||||.|+..+|.   + +||+...  .+++||.|...+++|++.....|+|
T Consensus        44 ~~~~~~~~yHG~l~red~~~lL~~--~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~~~~~~~~~~~F~s  121 (474)
T KOG0194|consen   44 KDLRELPYYHGLLPREDAEKLLKN--DGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNGNLFFFEGLRKFPT  121 (474)
T ss_pred             hHhhcCccccccccHhHHHHHhCC--CCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcCCeeEEeccccCCc
Confidence            334558999999999999999999  999999999986553   4 9999985  7899999999777888888899999


Q ss_pred             HHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCccccccc-----ccCccc----------h--
Q psy8552         284 VVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTF-----SEPFKF----------T--  346 (523)
Q Consensus       284 l~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~----------~--  346 (523)
                      +.+||.||+.+.....  +....|+.|+.+.              .|++.+..+++     .|.||+          .  
T Consensus       122 i~~li~~~~~~~~~~~--~~~~~L~~PI~r~--------------~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~  185 (474)
T KOG0194|consen  122 ISELVNYYKFSKLEIT--GKNFFLKRPIPRQ--------------KWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFK  185 (474)
T ss_pred             HHHHHHHHHhccccee--ccceeeccccccc--------------ccEEeccCccccceeecccccEEEEEEEEecCCce
Confidence            9999999999887653  4455799999984              45555555544     667777          1  


Q ss_pred             hHHHHHHhhcc------cchhhhhhhhchhcccccc-cccccc
Q psy8552         347 SVVELINYYKH------ESLSQYNSTLDTRLLYPVS-RFSSDV  382 (523)
Q Consensus       347 ~~~~avk~~~~------~~l~~~~~e~~ar~m~~l~-~~~~~l  382 (523)
                      ...||+|+++.      +.+.++|+|  ||+|+.|+ +|++++
T Consensus       186 ~~~VAvK~~k~~~~~~~~~~~e~m~E--ArvMr~l~H~NVVr~  226 (474)
T KOG0194|consen  186 VVPVAVKTTKGSSELTKEQIKEFMKE--ARVMRQLNHPNVVRF  226 (474)
T ss_pred             eeeeEEEeecccccccHHHHHHHHHH--HHHHHhCCCCCEEEE
Confidence            12289998884      356669999  99999999 999999

>smart00252 SH2 Src homology 2 domains

Probab=99.74  E-value=1.8e-17  Score=133.93  Aligned_cols=78  Identities=41%  Similarity=0.634  Sum_probs=70.6

Q ss_pred             Ccccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCc-EEEecCCCCCCCHHHHHHHHh
Q psy8552         419 KTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERG-FGFAEPFNIYPSLGALVLHYA  494 (523)
Q Consensus       419 ~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~-~~~~~~~~~F~sl~~LV~~y~  494 (523)
                      ++||| .|+|++||++|.++++|+||||.|+  ++.|+||++.++.++||+|...+++ +.+.+ ...|+||.+||+||+
T Consensus         1 ~~w~~g~i~r~~Ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~~~~l~~-~~~F~sl~eLI~~y~   79 (84)
T smart00252        1 QPWYHGFISREEAEKLLKNEGDGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDGKFYLDG-GRKFPSLVELVEHYQ   79 (84)
T ss_pred             CCeecccCCHHHHHHHHhcCCCcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCCcEEECC-CCccCCHHHHHHHHh
Confidence            48999 9999999999998889999999998  8999999999999999999998844 55544 579999999999999


Q ss_pred             hCC
Q psy8552         495 ANS  497 (523)
Q Consensus       495 ~~~  497 (523)
                      .++
T Consensus        80 ~~~   82 (84)
T smart00252       80 KNS   82 (84)
T ss_pred             hCC
Confidence            986

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.

>KOG4226|consensus

Probab=99.73  E-value=1.5e-17  Score=154.51  Aligned_cols=136  Identities=18%  Similarity=0.219  Sum_probs=111.7

Q ss_pred             ccccccc--cccccchhHHHhhhhhcccccccccCC----------------------CCC---CCCCCCcccc-cCCHH
Q psy8552         377 RFSSDVD--ADIHSNDVDKYINLKIAFTNLSGAVAS----------------------TVD---FESGEKTWLV-RMSRA  428 (523)
Q Consensus       377 ~~~~~l~--k~~~~~w~~~r~~~~~~~g~~p~~~~~----------------------~~~---~~~~~~~W~~-~isr~  428 (523)
                      .+.++++  -..+++||++|..+ +..|.+|.||+.                      ..|   ..+..++||+ +|+|.
T Consensus       213 Gerleivd~Pe~DPdWwkarn~~-G~vGLVPrNYv~vl~d~~~ts~~~~~s~~pq~sgn~p~~sg~~ag~~WYyG~itR~  291 (379)
T KOG4226|consen  213 GERLEIVDKPENDPDWWKARNAR-GQVGLVPRNYVVVLSDGPSTSKALHPSHAPQISGNGPSSSGRFAGRPWYYGNITRH  291 (379)
T ss_pred             CceeEeccCCCCCchHHhhcccC-CccceeecceEEEeccCccccccCCccccccccCCCCCccccccCCcceeccccHH
Confidence            3455553  24577999998766 478888877621                      011   1256779999 99999


Q ss_pred             HHHHHhcCCC-CCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCcc
Q psy8552         429 QAEALLSGRP-DGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDL  505 (523)
Q Consensus       429 ~Ae~~L~~~~-~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l  505 (523)
                      +||.+|.+.+ +|.||||+|+  +|.|++|++..++-+||++...++-+.+++  +.|.++.+||+||++.+|..+..|.
T Consensus       292 qae~~Ln~hG~eGdFLiRDSEsnpgD~SvSlka~grNKHFkVq~~d~~ycIGq--RkF~tmd~Lv~HY~kaPIfts~qgE  369 (379)
T KOG4226|consen  292 QAECALNEHGHEGDFLIRDSESNPGDFSVSLKASGRNKHFKVQLVDNVYCIGQ--RKFHTMDELVEHYKKAPIFTSEQGE  369 (379)
T ss_pred             HHHHHHhccCccCceEEecCCCCCcceeEEeeccCCCcceEEEEecceEEecc--ceeccHHHHHHhhhcCCceecCCCc
Confidence            9999998776 8999999999  999999999999999999999888777754  6999999999999999998888899


Q ss_pred             ceeecccccC
Q psy8552         506 KTTLAYPVFA  515 (523)
Q Consensus       506 ~~~L~~pv~~  515 (523)
                      ...|..|.++
T Consensus       370 KLyLvr~Lpk  379 (379)
T KOG4226|consen  370 KLYLVRALPK  379 (379)
T ss_pred             eEEEeccCCC
Confidence            9999887754

>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []

Probab=99.71  E-value=3.4e-17  Score=130.05  Aligned_cols=73  Identities=47%  Similarity=0.744  Sum_probs=67.7

Q ss_pred             ccc-cCCHHHHHHHhcC-CCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHH
Q psy8552         421 WLV-RMSRAQAEALLSG-RPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY  493 (523)
Q Consensus       421 W~~-~isr~~Ae~~L~~-~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y  493 (523)
                      ||| .|+|++||++|++ .++|+||||.|.  +|.|+||++.+++++||+|...+++.++......|+||.+||+||
T Consensus         1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y   77 (77)
T PF00017_consen    1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENGGYFLSDGKKFPSLSDLVEHY   77 (77)
T ss_dssp             TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTSEEESSTSSEBSSHHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecCCceEEccCCCcCCCHHHHHHhC
Confidence            999 9999999999998 779999999999  899999999999999999999999855555567899999999998

Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....

>KOG2996|consensus

Probab=99.68  E-value=3.3e-17  Score=166.13  Aligned_cols=139  Identities=28%  Similarity=0.340  Sum_probs=120.1

Q ss_pred             cccccc-ccccccchhHHHhhhhhcccccccccCCCCC----------CCCCCCcccc-cCCHHHHHHHhcCCCCCeEEe
Q psy8552         377 RFSSDV-DADIHSNDVDKYINLKIAFTNLSGAVASTVD----------FESGEKTWLV-RMSRAQAEALLSGRPDGTFLI  444 (523)
Q Consensus       377 ~~~~~l-~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~----------~~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLv  444 (523)
                      .+++.+ .-+.++.||.+|..++.+.|+.|++.+.++|          +++...+||. .|.|.+||..|.+.++|+|||
T Consensus       632 gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vpr~~~~~~~d~s~~~WyaG~MERaqaes~Lk~~~ngT~LV  711 (865)
T KOG2996|consen  632 GDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVPRQQDYVPTDYSEFPWYAGEMERAQAESTLKNRPNGTYLV  711 (865)
T ss_pred             CceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCCCCCCCCccchhhhhhhcchHhhhhhhhHhhcCCCceEEE
Confidence            356666 4567889999999999999999988755433          3556679999 999999999999999999999


Q ss_pred             ecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552         445 RPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       445 R~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      |.+.  .+.|+||+.+++.|+|.+|...+ |++.+.....|.|+.|||+||+.++|.+.-..|.++|+.|...+
T Consensus       712 R~r~kea~e~AISikynnevKHikI~~~d-g~~~i~E~k~F~sl~ELVeyYq~~sLke~Fk~LDTtLk~Pyke~  784 (865)
T KOG2996|consen  712 RYRTKEAKEFAISIKYNNEVKHIKIETND-GKVHITEDKKFNSLVELVEYYQSHSLKEIFKALDTTLKFPYKEP  784 (865)
T ss_pred             EecccchhheeEEEEeccccceEEEEecC-CeEEechhhhhhhHHHHHHHHHhccHHHHHHHhhhhhcCCCcCh
Confidence            9996  88999999999999999999985 55555556899999999999999999887888999999999743

>KOG0790|consensus

Probab=99.66  E-value=1.9e-16  Score=156.65  Aligned_cols=100  Identities=22%  Similarity=0.489  Sum_probs=88.7

Q ss_pred             CCCCccccCCCHHHHHHHhc-CCCCceEEEEcCCCCCCcEEEEEEECC---------eeEEEEEEEeCCeEEeCCCCccC
Q psy8552         213 RDAEWYWGDISRDDVNDKLA-DTADGTFLVRDTSTKNGEYTLTLRKGG---------TNKLIKIFHRNGRYGFSEPFKFT  282 (523)
Q Consensus       213 ~~~~wyhg~isr~~Ae~lL~-~~~~G~FLVR~s~~~~g~f~LSv~~~~---------~v~h~~I~~~~~~~~~~~~~~F~  282 (523)
                      .++.||||.||..+||.||. +...|+||||+|.+.||+||||++.+.         +|.|..|.+.+++|.++++..|+
T Consensus       108 tserWfHG~LsgkeAekLl~ekgk~gsfLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~~kydVGgge~F~  187 (600)
T KOG0790|consen  108 TSERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQEGKYDVGGGERFD  187 (600)
T ss_pred             hhhhhhccCCCchhHHHHHHhcCCCccEEEeccccCCCceEEEEEcCCcccCCCCccceEEEEEEecccccccCCccccc
Confidence            44569999999999999995 468999999999999999999999866         89999999999999999999999


Q ss_pred             CHHHHHHHHhhCCcccCCCCcceeecccccc
Q psy8552         283 SVVELINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       283 sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      ||.+||+||+.++..+ ..|-.+.|.+|+..
T Consensus       188 sltdLidhykknpmvE-t~gtvv~LrqP~na  217 (600)
T KOG0790|consen  188 SLTDLVEHYKKNPMVE-TLGTVVYLRQPLNA  217 (600)
T ss_pred             hHHHHHHHhccCchhh-hcceeEEeeccccc
Confidence            9999999999999865 24556678888764

>KOG1452|consensus

Probab=99.66  E-value=1.3e-16  Score=151.47  Aligned_cols=153  Identities=15%  Similarity=0.149  Sum_probs=128.9

Q ss_pred             CcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCC---CCHHHHHHHH
Q psy8552           8 LLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSK---LEPALLAIML   83 (523)
Q Consensus         8 ~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~---~d~~~va~lL   83 (523)
                      .|+..++++...-|+++++|++.||++     |++.-|+|+++|+ .+-+-|++.|+.....+.+..   -|.++|++++
T Consensus       188 ~L~~lV~RE~~~~PIvlrR~~~EiEkR-----GvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~~  262 (442)
T KOG1452|consen  188 SLSRLVQREPESPPIVLRRLYAEIEKR-----GVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGDS  262 (442)
T ss_pred             hhHhHhhcCCCCCchHHHHHHHHHHhc-----ccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeeccc
Confidence            456667888999999999999999999     9999999999966 888889999998654334332   2788999999


Q ss_pred             HHHHhhcCCCCCChhhHHHHHHHhc--CC-ChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccch
Q psy8552          84 KTYLKSLTEPLIPYVYYEKFVSLLS--GS-NDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTIL  160 (523)
Q Consensus        84 K~flr~LpePli~~~~~~~~~~~~~--~~-~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l  160 (523)
                      |.|||||||||++...++.-++++.  .. |..-..+.+.+++.+|+..++++|-.++.||..|..++..|+|+.+  .+
T Consensus       263 kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~--~L  340 (442)
T KOG1452|consen  263 KDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPT--RL  340 (442)
T ss_pred             HhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHH--HH
Confidence            9999999999999999999998876  33 4444667778999999999999999999999999998888877655  77


Q ss_pred             hhhhccc
Q psy8552         161 IQSFTFV  167 (523)
Q Consensus       161 ~~~~~~v  167 (523)
                      +.+|++.
T Consensus       341 s~i~~P~  347 (442)
T KOG1452|consen  341 SLIFAPL  347 (442)
T ss_pred             HHHhhhh
Confidence            7778744

>KOG4226|consensus

Probab=99.66  E-value=6.6e-16  Score=143.60  Aligned_cols=101  Identities=25%  Similarity=0.527  Sum_probs=88.4

Q ss_pred             CCCCCCccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHH
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELIN  289 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~  289 (523)
                      .+...+||+|.|+|.+||.+|-. ..+|+||||+|++++|+|++|++..++.+||++...++.|+|+. ++|.++.+||+
T Consensus       277 ~~ag~~WYyG~itR~qae~~Ln~hG~eGdFLiRDSEsnpgD~SvSlka~grNKHFkVq~~d~~ycIGq-RkF~tmd~Lv~  355 (379)
T KOG4226|consen  277 RFAGRPWYYGNITRHQAECALNEHGHEGDFLIRDSESNPGDFSVSLKASGRNKHFKVQLVDNVYCIGQ-RKFHTMDELVE  355 (379)
T ss_pred             cccCCcceeccccHHHHHHHHhccCccCceEEecCCCCCcceeEEeeccCCCcceEEEEecceEEecc-ceeccHHHHHH
Confidence            37789999999999999999954 58999999999999999999999999999999999999999885 99999999999


Q ss_pred             HHhhCCcccCCCCcceeeccccc
Q psy8552         290 YYKHESLSQYNSTLDTRLLYPVS  312 (523)
Q Consensus       290 ~y~~~~~~~~~~~l~~~L~~p~~  312 (523)
                      ||++.++-....|-...|..+++
T Consensus       356 HY~kaPIfts~qgEKLyLvr~Lp  378 (379)
T KOG4226|consen  356 HYKKAPIFTSEQGEKLYLVRALP  378 (379)
T ss_pred             hhhcCCceecCCCceEEEeccCC
Confidence            99998875444455566666654

>KOG4271|consensus

Probab=99.62  E-value=3.5e-16  Score=166.53  Aligned_cols=152  Identities=21%  Similarity=0.330  Sum_probs=131.3

Q ss_pred             CCCCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCC--HHHHH
Q psy8552           4 YAPNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLE--PALLA   80 (523)
Q Consensus         4 ~~p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d--~~~va   80 (523)
                      |..-+|.+ +..+...||.++.+|++||++.     |+.+||+||++|+ ...++++++|.++-. +++...|  +|++|
T Consensus       917 ~~~~~l~~-~~t~~k~ip~~~ekc~sfiedt-----g~~te~lyrv~gnkT~~eelrkqf~n~~~-~dl~s~d~~v~~va  989 (1100)
T KOG4271|consen  917 YFLTPLQD-AVTSEKPIPIFLEKCKSFIEDT-----GLSTEGLYRVSGNKTDLEELRKQFLNDHN-FDLSSMDTTVNVVA  989 (1100)
T ss_pred             ccCCcccc-cccCCcccchHHHHHHHHHHhc-----cchhhhheecCCCCccHHHHHHHHHhhcc-cccccccccccccc
Confidence            33444433 3556788999999999999999     8999999999966 999999999988543 4665554  99999


Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccch
Q psy8552          81 IMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTIL  160 (523)
Q Consensus        81 ~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l  160 (523)
                      +.+|.||..||+||+|+.++..+.++.++.|..+++..++..+..||+.|+.+++|++.||.+|+.....|.|+.+  ++
T Consensus       990 gAlksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~--~~ 1067 (1100)
T KOG4271|consen  990 GALKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNN--NL 1067 (1100)
T ss_pred             CcchhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhcccccccccccc--cc
Confidence            9999999999999999999999999999999999999999999999999999999999999999998877776654  44


Q ss_pred             hhhh
Q psy8552         161 IQSF  164 (523)
Q Consensus       161 ~~~~  164 (523)
                      ..+|
T Consensus      1068 ~i~~ 1071 (1100)
T KOG4271|consen 1068 SICF 1071 (1100)
T ss_pred             cccc
Confidence            4455

>KOG4637|consensus

Probab=99.57  E-value=2.7e-15  Score=145.10  Aligned_cols=99  Identities=29%  Similarity=0.547  Sum_probs=93.2

Q ss_pred             CCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHH
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  492 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~  492 (523)
                      +...+||| +|+|.++...|.+++||+||||+-.  +|.|+|+++.++..+-.+|...++.+.|.+ ...|+|+++||+|
T Consensus        20 L~~a~WYWgdisReev~~~L~d~PDGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgKyGF~d-~ltf~SVVelIn~   98 (464)
T KOG4637|consen   20 LQDAEWYWGDISREEVNKKLRDQPDGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGKYGFSD-PLTFNSVVELINH   98 (464)
T ss_pred             hhhccccccccCHHHHHHHhcCCCCCcEEeeccccCCCceEEEEecCCccceeeeEEecCccCCCC-chhhHHHHHHHHH
Confidence            67789999 9999999999999999999999766  999999999999999999999998888875 4799999999999


Q ss_pred             HhhCCccccCCccceeecccccC
Q psy8552         493 YAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       493 y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      |+..||.+.++.|.++|.+||.+
T Consensus        99 yr~~SL~~yN~~LDvrLlyPVs~  121 (464)
T KOG4637|consen   99 YRNESLAQYNPKLDVRLLYPVSR  121 (464)
T ss_pred             HhhhHHHhhCcccceeeechHHH
Confidence            99999999999999999999975

>KOG1264|consensus

Probab=99.54  E-value=6.5e-15  Score=154.55  Aligned_cols=100  Identities=29%  Similarity=0.601  Sum_probs=84.9

Q ss_pred             CCcCCCCCCCccccCCCHHHHHHHhcCC-CCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHH
Q psy8552         207 PETNSLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVV  285 (523)
Q Consensus       207 ~~~~~l~~~~wyhg~isr~~Ae~lL~~~-~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~  285 (523)
                      +....+++++|||..++|++||++|+.- .||+||||.+ .....|+||++.+|+++|+||.+++..|.++ ...|.||.
T Consensus       640 Pqp~~He~k~W~~as~treqAE~mL~rvp~DGaFLiR~~-~~~nsy~iSfr~~gkikHcRi~rdGr~fvl~-t~~FesLv  717 (1267)
T KOG1264|consen  640 PQPNPHESKPWYHASLTREQAEDMLMRVPRDGAFLIRKR-EGSNSYAISFRARGKIKHCRINRDGRHFVLG-TSAFESLV  717 (1267)
T ss_pred             CCCCcccCCccccccccHHHHHHHHhhCccCcceEEEec-cCCceEEEEEEEcCcEeEEEEccCceEEEec-cHHHHHHH
Confidence            4456788999999999999999999974 6799999944 4477899999999999999999865566555 47799999


Q ss_pred             HHHHHHhhCCcccCCCCcceeecccccc
Q psy8552         286 ELINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       286 ~LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      +||+||.++++.     ..+.|.+|+..
T Consensus       718 ~lv~yY~k~~ly-----R~mkLr~PVne  740 (1267)
T KOG1264|consen  718 ELVSYYEKHPLY-----RKMKLRYPVNE  740 (1267)
T ss_pred             HHHHHHhcChhh-----hcccccCcCCH
Confidence            999999999985     36788999874

>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins

Probab=99.49  E-value=2.2e-13  Score=125.85  Aligned_cols=138  Identities=19%  Similarity=0.194  Sum_probs=112.0

Q ss_pred             CCHHHHHHHHHHhccCCCCCCCccceE---EecC-ChhHHHHH-HHHHhCCCCCCCC--------CCCCHHHHHHHHHHH
Q psy8552          20 SPFKSDNLKAASEHYSKPDCGLSAANL---FEPG-NASQVAEL-FHAYSGEIKSYNF--------SKLEPALLAIMLKTY   86 (523)
Q Consensus        20 vP~vv~~~i~~l~~~~~~~~Gl~~eGi---fR~~-~~~~v~~l-~~~~~~~~~~~~~--------~~~d~~~va~lLK~f   86 (523)
                      |=.+|..|.++|+.+     |+++++|   ||.+ +...++.+ +..|+.+......        ...|+|+|+++||.|
T Consensus         6 v~~l~~~~t~eLk~r-----g~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~   80 (198)
T cd04401           6 VKGLIHNITEELKSR-----GLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWI   80 (198)
T ss_pred             HHHHHHHHHHHHHhc-----ccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHH
Confidence            346789999999999     9999999   9999 55777777 6677766322222        236999999999999


Q ss_pred             HhhcCCCCCCh-hhHHHHHHHhcCCChHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhh
Q psy8552          87 LKSLTEPLIPY-VYYEKFVSLLSGSNDRHIGSRLFALVQDF--PAHHFSALRYLMAHLARMCALQYARGVREPPTILIQS  163 (523)
Q Consensus        87 lr~LpePli~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L--p~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~  163 (523)
                      ||.||.++++. +.|..|...-+..+..  ..+++.++..+  |+.|..++..++.+|..|+.|+..|+|+..  .++.+
T Consensus        81 ~~rLP~~~v~~~~~Y~~F~~~E~~~~~p--~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~--kLs~~  156 (198)
T cd04401          81 WSRLPGSKVIWWEVYEEFKARERRSNYP--ADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGR--KLSKM  156 (198)
T ss_pred             HHHCCCCccCCHHHHHHHHHHHHhcCCc--HHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHh--HHHHH
Confidence            99999999999 9999999965432222  23788889887  899999999999999999999998887755  77788


Q ss_pred             hcc
Q psy8552         164 FTF  166 (523)
Q Consensus       164 ~~~  166 (523)
                      |++
T Consensus       157 fg~  159 (198)
T cd04401         157 AGP  159 (198)
T ss_pred             hhH
Confidence            773

Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4792|consensus

Probab=99.34  E-value=2.5e-12  Score=116.98  Aligned_cols=94  Identities=32%  Similarity=0.492  Sum_probs=79.0

Q ss_pred             CCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeC--------CcEEEecCCCCCC
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETE--------RGFGFAEPFNIYP  484 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~--------~~~~~~~~~~~F~  484 (523)
                      .+...||+ .|||+||..+|+++..|.||||+|.  +|.|+|||.-+.+|-||.|....        .++.++  ...|+
T Consensus         8 ~er~swYfg~mSRqeA~~lL~~~r~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rIg--dQ~Fd   85 (293)
T KOG4792|consen    8 SERSSWYFGPMSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRIG--DQEFD   85 (293)
T ss_pred             hhccceecCcccHHHHHHHhcCcceeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeeec--ccccc
Confidence            45678999 9999999999998889999999998  99999999999999999999721        134443  36899


Q ss_pred             CHHHHHHHHhhCCccccCCccceeecccccCCC
Q psy8552         485 SLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA  517 (523)
Q Consensus       485 sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~  517 (523)
                      +|+.|++||+-+-|.      .++|..|.++..
T Consensus        86 ~lPaLL~fykihyLd------tttLi~p~~r~~  112 (293)
T KOG4792|consen   86 SLPALLEFYKIHYLD------TTTLIEPAKRSR  112 (293)
T ss_pred             chHHHHhheeEeeec------cccccccccccc
Confidence            999999999998543      567888887753

>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins

Probab=99.28  E-value=2.1e-11  Score=113.74  Aligned_cols=146  Identities=16%  Similarity=0.178  Sum_probs=108.8

Q ss_pred             CCCCCCCCHHHHHHH--HHHhccCCCCCCCcc--ceEEecC-ChhHHHHHHHHHhCCCCC--CC--CCCCC--------H
Q psy8552          14 NVSSTTSPFKSDNLK--AASEHYSKPDCGLSA--ANLFEPG-NASQVAELFHAYSGEIKS--YN--FSKLE--------P   76 (523)
Q Consensus        14 ~~~~~~vP~vv~~~i--~~l~~~~~~~~Gl~~--eGifR~~-~~~~v~~l~~~~~~~~~~--~~--~~~~d--------~   76 (523)
                      ...+...|..+..-.  +++..+     .++.  .|+|+.+ ...-+.+.++.++..+..  .+  ...++        -
T Consensus        31 l~~~~~~p~~i~~~~~~~~~~~~-----~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~~~~~~e  105 (235)
T cd04405          31 LDPALVNPKHISYNMDPDVYTSN-----YLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHDMLSGFK  105 (235)
T ss_pred             hcccCCCCcchhhcccccccccc-----cccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccccccchH
Confidence            345556666665544  444444     3444  6899999 459999999999887542  11  11222        2


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhHHHHHHHhc---CCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy8552          77 ALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLS---GSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGV  153 (523)
Q Consensus        77 ~~va~lLK~flr~LpePli~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m  153 (523)
                      -+||.++|.||++|||||+|..+|+.|+.++.   ....+..+++++.++..||++||+.|+.|+.||.+|+++ +..+|
T Consensus       106 ~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va~~-~~~~L  184 (235)
T cd04405         106 RLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAKN-DMPRL  184 (235)
T ss_pred             HHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhc-Ccccc
Confidence            27999999999999999999999999998887   345888999999999999999999999999999999998 44444


Q ss_pred             CC--Ccc-chhhhhc
Q psy8552         154 RE--PPT-ILIQSFT  165 (523)
Q Consensus       154 ~~--~~~-~l~~~~~  165 (523)
                      ..  +|+ ++++.|+
T Consensus       185 ~~~~~nR~~v~~~Fs  199 (235)
T cd04405         185 HKEIENRMLVKQTFS  199 (235)
T ss_pred             ccccchHHHHHHHhh
Confidence            32  333 4555665

This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4724|consensus

Probab=99.28  E-value=6.4e-12  Score=130.47  Aligned_cols=140  Identities=15%  Similarity=0.098  Sum_probs=127.3

Q ss_pred             CCCHHHHHHHHHHhccCCCCCCCccceEEecC-ChhHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCh
Q psy8552          19 TSPFKSDNLKAASEHYSKPDCGLSAANLFEPG-NASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPY   97 (523)
Q Consensus        19 ~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~-~~~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~flr~LpePli~~   97 (523)
                      ..|..+..+.-++-.+     |--++||||.. ....+++||+.+++|.. ++++...++++|.++|.|||.+|.-++..
T Consensus        95 ~lp~p~~d~l~~lc~k-----gp~t~giFr~~anek~~relKe~lnsgv~-v~l~~~~i~v~a~v~kdflr~ip~~~lSs  168 (741)
T KOG4724|consen   95 RLPEPDEDFLLLLCCK-----GPCTRGIFRTIANEKNVRELKETLNSGVD-VGLKSGEIVVDAAVDKDFLRTIPQLTLSS  168 (741)
T ss_pred             CCCChHHHHHHHHhhc-----CcccHHHHHHHHHHHHHHHHHHHhccccc-ccccccceEEeehhhhchhhhchhhhhcc
Confidence            3899999999999888     77888999999 44999999999999976 68888899999999999999999999999


Q ss_pred             hhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccc
Q psy8552          98 VYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFV  167 (523)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v  167 (523)
                      ++|+.|+.+....++++++.+++.+...||..|..+|++|...| .+..++..|+|+..  ++|++.+.+
T Consensus       169 dl~~hw~~~~~~~~~e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~--nla~cv~p~  235 (741)
T KOG4724|consen  169 DLNSHWQLQGPENVYEAIISEIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGP--NLAQCVNPI  235 (741)
T ss_pred             ccHHHHhhccccccHHHHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCc--cHHHHhcch
Confidence            99999999999999999999999999999999999999999988 89999999999988  455555533

>KOG4370|consensus

Probab=99.27  E-value=2e-11  Score=120.56  Aligned_cols=138  Identities=15%  Similarity=0.171  Sum_probs=117.0

Q ss_pred             CCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecC-ChhHHHHHHHHHhCCC--------------------------
Q psy8552          14 NVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPG-NASQVAELFHAYSGEI--------------------------   66 (523)
Q Consensus        14 ~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~-~~~~v~~l~~~~~~~~--------------------------   66 (523)
                      ..++...|.+....+.+.+.+     |+.+||++|.+ .++..++++.+-+++.                          
T Consensus        65 e~d~~~~~~~f~~~~~~~e~~-----~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvv  139 (514)
T KOG4370|consen   65 ELDGIPLPSFFRYAIDFVEEN-----GLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVV  139 (514)
T ss_pred             ccCCCcCcccchhhhhhhhcc-----ccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccc
Confidence            345667899999999999999     89999999999 6666666655544431                          


Q ss_pred             --------------CCCCCCCCCHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHH
Q psy8552          67 --------------KSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFS  132 (523)
Q Consensus        67 --------------~~~~~~~~d~~~va~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~  132 (523)
                                    .....+++++.+||+|||.|||+||+||+|.++...|..++.-.......+.++.++..||..||.
T Consensus       140 pi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk~Lp~cNyl  219 (514)
T KOG4370|consen  140 PIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLKILPKCNYL  219 (514)
T ss_pred             cccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccchH
Confidence                          011234567999999999999999999999999999999999888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCCC
Q psy8552         133 ALRYLMAHLARMCALQYARGVREP  156 (523)
Q Consensus       133 ~L~~l~~~l~~v~~~~~~n~m~~~  156 (523)
                      ++.||+-|+-.|......|+|+..
T Consensus       220 l~swl~lH~d~vi~~e~~~Kln~q  243 (514)
T KOG4370|consen  220 LYSWLNLHKDKVIEEEYCLKLNKQ  243 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchh
Confidence            999999999999999998888844

>KOG3601|consensus

Probab=99.19  E-value=3.7e-12  Score=115.42  Aligned_cols=85  Identities=28%  Similarity=0.452  Sum_probs=76.7

Q ss_pred             CCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHHHHHH
Q psy8552         212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVELINY  290 (523)
Q Consensus       212 l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~LV~~  290 (523)
                      +..++||+|.|+|..||++|++..+|+||+|.++..+|+|.+|+++...|.|+++.+ ..|+|+.. ..+|+|+.+|++|
T Consensus        55 ~~~~~wve~~i~r~~ae~~l~~~~~G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw-~skfnslnplv~Y  133 (222)
T KOG3601|consen   55 MKPHEWVEGLIPRPLAEDLLSKKRDGDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLW-SSKFNSLNPLVSY  133 (222)
T ss_pred             cccccceecccccchhhhhhhccCcchhhhhhhhcCcccccccccCCCCceeccccccCccccccc-hhhccCCCCCccc
Confidence            456899999999999999999999999999999999999999999999999999997 45677654 4789999999999


Q ss_pred             HhhCCcc
Q psy8552         291 YKHESLS  297 (523)
Q Consensus       291 y~~~~~~  297 (523)
                      |++.+..
T Consensus       134 ~rt~s~~  140 (222)
T KOG3601|consen  134 HRTASQS  140 (222)
T ss_pred             Ccccccc
Confidence            9998864

>KOG3601|consensus

Probab=99.10  E-value=1.2e-11  Score=112.05  Aligned_cols=116  Identities=23%  Similarity=0.202  Sum_probs=95.9

Q ss_pred             ccccccc-cccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCce
Q psy8552         377 RFSSDVD-ADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQY  452 (523)
Q Consensus       377 ~~~~~l~-k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~  452 (523)
                      .+.+++. ..++.+|..+.  .++.+|++|.|++..     ...+||+ .|+|..||++|+++.+|+||+|.++  +|.|
T Consensus        22 g~~lk~l~~~d~~nw~~ae--l~g~~g~~P~Nai~~-----~~~~wve~~i~r~~ae~~l~~~~~G~fl~r~s~sSPg~f   94 (222)
T KOG3601|consen   22 GDNLKILNMEDDINWYKAE--LDGPEGFIPKNAIRM-----KPHEWVEGLIPRPLAEDLLSKKRDGDFLIRLSESSPGDF   94 (222)
T ss_pred             CCceEecchHHhhhhhhHh--hcCccccCccccccc-----ccccceecccccchhhhhhhccCcchhhhhhhhcCcccc
Confidence            4555553 34455677644  445899999999743     3358999 9999999999999889999999998  9999


Q ss_pred             EEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccc
Q psy8552         453 ALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEE  500 (523)
Q Consensus       453 ~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~  500 (523)
                      .+|+++...|.|+++.+...+.++... ..|.|+.+||+||..++...
T Consensus        95 sgsvr~~d~vqhfkvvrpa~~k~~lw~-skfnslnplv~Y~rt~s~~r  141 (222)
T KOG3601|consen   95 SGSVRFPDGVQHFKVVRPAFGKYFLWS-SKFNSLNPLVSYHRTASQSR  141 (222)
T ss_pred             cccccCCCCceeccccccCccccccch-hhccCCCCCcccCccccccc
Confidence            999999999999999988877777664 58999999999999988654

>KOG1930|consensus

Probab=99.02  E-value=3.7e-10  Score=111.69  Aligned_cols=97  Identities=30%  Similarity=0.461  Sum_probs=81.8

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEE----------C-----CeeEEEEEEEeCCcEEE
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVC----------S-----GAPKHCLVYETERGFGF  476 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~----------~-----~~v~h~~I~~~~~~~~~  476 (523)
                      ...++-||. +|+|++|.+||+.+..|+||||+|.  .|.|-|.++.          +     ..|+||+|+....|..+
T Consensus       208 ~DTSKyWYKP~isREQAIalLrdkePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spkGVkL  287 (483)
T KOG1930|consen  208 KDTSKYWYKPNISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPKGVKL  287 (483)
T ss_pred             ecccccccCCCCCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCCceec
Confidence            457788999 9999999999999999999999999  9999999987          1     34999999998888766


Q ss_pred             ec--CCCCCCCHHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552         477 AE--PFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       477 ~~--~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      -+  ....|.||..||--|+-.+     -.|+|.|+.|-+.+
T Consensus       288 KGC~nEP~FGSLSALV~QHSIt~-----LALPckL~iP~rDp  324 (483)
T KOG1930|consen  288 KGCDNEPVFGSLSALVYQHSITA-----LALPCKLVIPDRDP  324 (483)
T ss_pred             cCCCCCCccchhHHHHhhccchh-----hhcceeEeccCCCc
Confidence            43  3579999999996444433     67899999998776

>KOG0194|consensus

Probab=98.95  E-value=3e-09  Score=111.14  Aligned_cols=96  Identities=29%  Similarity=0.414  Sum_probs=80.2

Q ss_pred             CCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CC---ce-EEEEEEC--CeeEEEEEEEeCCcEEEecCCCCCCCH
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TG---QY-ALSIVCS--GAPKHCLVYETERGFGFAEPFNIYPSL  486 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~---~~-~Ls~~~~--~~v~h~~I~~~~~~~~~~~~~~~F~sl  486 (523)
                      +..++||| .+.|++++.+|.  .+|+||||.|+  ++   .+ +||+...  .+++||.|...++.+++.. ...|+|+
T Consensus        46 ~~~~~~yHG~l~red~~~lL~--~~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~~~~~~~~-~~~F~si  122 (474)
T KOG0194|consen   46 LRELPYYHGLLPREDAEKLLK--NDGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNGNLFFFEG-LRKFPTI  122 (474)
T ss_pred             hhcCccccccccHhHHHHHhC--CCCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcCCeeEEec-cccCCcH
Confidence            45579999 999999999998  69999999999  33   24 8999885  8899999999888555544 5799999


Q ss_pred             HHHHHHHhhCCccccCCccceeecccccCC
Q psy8552         487 GALVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       487 ~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      .+||.||+.+.+..+  +....|..|+.++
T Consensus       123 ~~li~~~~~~~~~~~--~~~~~L~~PI~r~  150 (474)
T KOG0194|consen  123 SELVNYYKFSKLEIT--GKNFFLKRPIPRQ  150 (474)
T ss_pred             HHHHHHHHhccccee--ccceeeccccccc
Confidence            999999999987763  3455899999875

>KOG1930|consensus

Probab=98.90  E-value=2.2e-09  Score=106.24  Aligned_cols=94  Identities=27%  Similarity=0.350  Sum_probs=79.8

Q ss_pred             CccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEE----------C-----CeeEEEEEEEeCCeEEe---CC
Q psy8552         216 EWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRK----------G-----GTNKLIKIFHRNGRYGF---SE  277 (523)
Q Consensus       216 ~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~----------~-----~~v~h~~I~~~~~~~~~---~~  277 (523)
                      =||..+|+|++|-+||++++.|+||||+|.+..|.|-|.++.          +     .-|+||.|+...++..+   ++
T Consensus       213 yWYKP~isREQAIalLrdkePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spkGVkLKGC~n  292 (483)
T KOG1930|consen  213 YWYKPNISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPKGVKLKGCDN  292 (483)
T ss_pred             cccCCCCCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCCceeccCCCC
Confidence            499999999999999999999999999999999999999883          2     23899999987777776   45


Q ss_pred             CCccCCHHHHHHHHhhCCcccCCCCcceeeccccccC
Q psy8552         278 PFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRF  314 (523)
Q Consensus       278 ~~~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~  314 (523)
                      ...|.||..||--+.-..+     .|+|.|.-|-..+
T Consensus       293 EP~FGSLSALV~QHSIt~L-----ALPckL~iP~rDp  324 (483)
T KOG1930|consen  293 EPVFGSLSALVYQHSITAL-----ALPCKLVIPDRDP  324 (483)
T ss_pred             CCccchhHHHHhhccchhh-----hcceeEeccCCCc
Confidence            6889999999987777666     6888888775543

>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A

Probab=98.76  E-value=1.3e-07  Score=89.02  Aligned_cols=79  Identities=15%  Similarity=0.231  Sum_probs=59.4

Q ss_pred             CCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEE-ECCeeEEEEEEEe--CC------eEEeCCCCccCC
Q psy8552         213 RDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLR-KGGTNKLIKIFHR--NG------RYGFSEPFKFTS  283 (523)
Q Consensus       213 ~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~-~~~~v~h~~I~~~--~~------~~~~~~~~~F~s  283 (523)
                      -.+|-|+ +++-.+|++.|.+.+.|.++||.|+......+++++ .+|-..|+.|...  +.      .+.|+ +..|.+
T Consensus        36 I~HP~F~-n~~~~qAe~~L~~~~~Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~~L~i~-~~~yeD  113 (220)
T PF14633_consen   36 IKHPLFK-NFNYKQAEEYLADQDVGEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEFSLGKTLKIG-GEEYED  113 (220)
T ss_dssp             HCSTTEE-SS-HHHHHHHHCCS-TT-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTTS-SSEEEET-TEEESS
T ss_pred             ccCCCcc-CCCHHHHHHHHhcCCCCCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCccccCcEEEEC-CeEECC
Confidence            3467777 999999999999999999999999986666899988 5666779998752  21      24444 688999


Q ss_pred             HHHHHHHHhh
Q psy8552         284 VVELINYYKH  293 (523)
Q Consensus       284 l~~LV~~y~~  293 (523)
                      |.|||.-|..
T Consensus       114 LDEii~r~V~  123 (220)
T PF14633_consen  114 LDEIIARHVE  123 (220)
T ss_dssp             HHHHHHHCHH
T ss_pred             HHHHHHHHHH
Confidence            9999987765

>KOG3565|consensus

Probab=98.75  E-value=2e-08  Score=108.58  Aligned_cols=154  Identities=20%  Similarity=0.257  Sum_probs=129.2

Q ss_pred             CCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecC-Ch-hHHHHHHHHHhCCCCC-CCCCCCCHHHHHHHHHHHHhhc
Q psy8552          14 NVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPG-NA-SQVAELFHAYSGEIKS-YNFSKLEPALLAIMLKTYLKSL   90 (523)
Q Consensus        14 ~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~-~~-~~v~~l~~~~~~~~~~-~~~~~~d~~~va~lLK~flr~L   90 (523)
                      ....+.+|.++..|+.+++.+     |+..+||||.. +. ..|...+.++.+|... .+..+-+... |.++|.|+|.|
T Consensus       212 ~~~~q~iP~i~d~~~~l~~~~-----~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~l  285 (640)
T KOG3565|consen  212 QYYFQFIPLIVDSLQRLEERR-----GLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGL  285 (640)
T ss_pred             cCCcccccHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccC
Confidence            346788999999999999999     89999999955 66 9999999999998421 2333445666 99999999999


Q ss_pred             CCC-CCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccccc
Q psy8552          91 TEP-LIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLP  169 (523)
Q Consensus        91 peP-li~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P  169 (523)
                      .+| .++++.+..++.+....+.-+++..++.++..+|..+..++.++..|+...+..+..|.|...  +++.+|+   |
T Consensus       286 e~P~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~--n~~~~~g---~  360 (640)
T KOG3565|consen  286 EEPADFPFEDFGQPHDCAARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPY--NLAICFG---P  360 (640)
T ss_pred             CCcccCccccccchhhhhhhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCcc--ccccccc---c
Confidence            999 999999999999999777778778889999999999999999999999999998888866544  7777775   6


Q ss_pred             cCCCCCCCC
Q psy8552         170 TFSSPPALP  178 (523)
Q Consensus       170 ~~~~pp~~~  178 (523)
                      ++.+.|..+
T Consensus       361 ~~~~~~e~~  369 (640)
T KOG3565|consen  361 TLEPVPEGP  369 (640)
T ss_pred             ccccCcccc
Confidence            665555444

>KOG3697|consensus

Probab=98.34  E-value=5.8e-07  Score=85.19  Aligned_cols=100  Identities=23%  Similarity=0.225  Sum_probs=85.5

Q ss_pred             CCCCCccccCCCHHHHHHHhcCCCCceEEEEcCC----------------------------------------------
Q psy8552         212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTS----------------------------------------------  245 (523)
Q Consensus       212 l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~----------------------------------------------  245 (523)
                      ....+||||.++++++++.|..  +|.|++|.+.                                              
T Consensus       198 p~k~pp~~g~l~~~~~q~~l~~--~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~~~  275 (345)
T KOG3697|consen  198 PSKMPPPGGFLDTRLKQRPLAP--DAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLFDE  275 (345)
T ss_pred             cccCCCCCCccchhhhhccCCc--ccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhccc
Confidence            3557999999999999999987  8888888543                                              


Q ss_pred             -CCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHHHHhhCCcccCCCCcceeeccccccC
Q psy8552         246 -TKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRF  314 (523)
Q Consensus       246 -~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~  314 (523)
                       +++|.|+|+-..+++.+|..+...+|-... ..+.|+|+.-||.|+..+.+++...+....|.+|+.+.
T Consensus       276 ~~~~gqyvltgl~~~~~khlllvdpegvvrt-kd~~fdsishli~yh~~~~lpiis~~sel~l~~pv~r~  344 (345)
T KOG3697|consen  276 TTTPGQYVLTGLQSGQPKHLLLVDPEGVVRT-KDRRFDSISHLINYHMDNHLPIISAGSELCLQQPVERK  344 (345)
T ss_pred             cCCCccEEEecccCCCcceEEEECCccceec-ccchhhHHHHHHHHhhhccCceecCcchhhhhCccccc
Confidence             347889999999999999998877776654 45899999999999999999998888888999998864

>KOG1856|consensus

Probab=98.12  E-value=2.6e-05  Score=86.82  Aligned_cols=170  Identities=16%  Similarity=0.317  Sum_probs=122.7

Q ss_pred             CCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEE-CCeeEEEEEEE--eCCeEEeC-----CCCccC
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRK-GGTNKLIKIFH--RNGRYGFS-----EPFKFT  282 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~-~~~v~h~~I~~--~~~~~~~~-----~~~~F~  282 (523)
                      .+-.+|.|| +++-++||++|.....|.++||.|+......+++++. ++--.|+.|..  ..+.|.++     ++..|.
T Consensus      1104 RvI~HP~F~-n~n~eQAe~yL~~~d~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~~l~i~~e~fe 1182 (1299)
T KOG1856|consen 1104 RVIAHPLFK-NLNAEQAEAYLSDMDQGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSLGKTLWIGGEEFE 1182 (1299)
T ss_pred             hhhcCcccc-CCCHHHHHHHHHhcccccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccccceEEECCcccc
Confidence            344678888 8999999999999999999999999866668888874 55566777763  23333332     468899


Q ss_pred             CHHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhhcccchhh
Q psy8552         283 SVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQ  362 (523)
Q Consensus       283 sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~~~~~l~~  362 (523)
                      .|.++|.-|-..-..                                                                 
T Consensus      1183 DLDEiI~r~vqpm~~----------------------------------------------------------------- 1197 (1299)
T KOG1856|consen 1183 DLDEIIARYVQPMAT----------------------------------------------------------------- 1197 (1299)
T ss_pred             cHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence            999999877653320                                                                 


Q ss_pred             hhhhhchhccccccccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccccCCHHHHHHHhcC--CCCC
Q psy8552         363 YNSTLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLVRMSRAQAEALLSG--RPDG  440 (523)
Q Consensus       363 ~~~e~~ar~m~~l~~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~~isr~~Ae~~L~~--~~~G  440 (523)
                      ..+|                                                 +....+|..=++.+.|++|..  +.++
T Consensus      1198 ~~~e-------------------------------------------------m~nhkyf~~Gt~~~~ek~L~~~k~~np 1228 (1299)
T KOG1856|consen 1198 NLRE-------------------------------------------------MTNHKYFFTGTKKEVEKLLRDYKKVNP 1228 (1299)
T ss_pred             HHHH-------------------------------------------------HHhhhHhhcCCHHHHHHHHHHHhccCC
Confidence            0011                                                 111123333357778888852  2233


Q ss_pred             e---EEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCC
Q psy8552         441 T---FLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANS  497 (523)
Q Consensus       441 ~---FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~  497 (523)
                      .   |..-.|.  ||.|.|+++.+++++|--+.....|+.|.+  +.|+||.+|..+++.+-
T Consensus      1229 ~~~~Y~F~~s~~~PG~F~L~y~~~~k~~heyv~v~p~g~~~rg--~~f~tld~L~~~FK~h~ 1288 (1299)
T KOG1856|consen 1229 KKSVYFFCASHEHPGKFCLSYKPSSKPRHEYVKVVPEGFRFRG--QNFGTLDELCRWFKRHY 1288 (1299)
T ss_pred             CeeeEEEEecccCCceEEEEeccCCCccceeEEEcccceEEec--ccchhHHHHHHHHHHHh
Confidence            3   3334455  999999999999999999999999999965  58999999999998873

>KOG3751|consensus

Probab=98.09  E-value=1.8e-06  Score=88.31  Aligned_cols=98  Identities=28%  Similarity=0.503  Sum_probs=80.1

Q ss_pred             CCCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE--eCCe-EE-e-CCCCccCC
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH--RNGR-YG-F-SEPFKFTS  283 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~--~~~~-~~-~-~~~~~F~s  283 (523)
                      ....+.||||.|+|+++..+++.  ..+|-||+|+|.++|..|+++.....++.||+|.-  .+|. |+ . .+..+|.+
T Consensus       515 ~h~sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~~~~~~t~~~g~t~~sd  594 (622)
T KOG3751|consen  515 IHRSQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDDGCTFFTLDDGPTKFSD  594 (622)
T ss_pred             hcccccCcccccCchhhhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCCCceeeccCCCCccccc
Confidence            35668999999999999998876  48899999999999988999999999999999984  3443 32 2 34577999


Q ss_pred             HHHHHHHHhhCCcccCCCCcceeecccccc
Q psy8552         284 VVELINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       284 l~~LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      +..|+++|+-+.-     -+.|.|++-|.+
T Consensus       595 ~~ql~~~~ql~k~-----~l~~al~~~~~r  619 (622)
T KOG3751|consen  595 LIQLVEFYQLNKG-----VLPCALKHCCER  619 (622)
T ss_pred             cccccchhhcCCC-----cchHHHHHHHHh
Confidence            9999999988742     567777776654

>KOG3697|consensus

Probab=97.95  E-value=1.4e-05  Score=76.12  Aligned_cols=96  Identities=24%  Similarity=0.229  Sum_probs=79.0

Q ss_pred             CCCcccc-cCCHHHHHHHhcCCCCCeEEeecC------------------------------------------------
Q psy8552         417 GEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS------------------------------------------------  447 (523)
Q Consensus       417 ~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s------------------------------------------------  447 (523)
                      ..++||+ .+++++++..|.  ++|.|++|.+                                                
T Consensus       199 ~k~pp~~g~l~~~~~q~~l~--~~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~~~~  276 (345)
T KOG3697|consen  199 SKMPPPGGFLDTRLKQRPLA--PDAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLFDET  276 (345)
T ss_pred             ccCCCCCCccchhhhhccCC--cccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhcccc
Confidence            5679999 999999999997  7777777643                                                


Q ss_pred             C-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552         448 T-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       448 ~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      . +|.|+|+=...+..+|.++.-.+ |..- .+.+.|+|+..||+||..+.|++-..|--.+|.+||.+.
T Consensus       277 ~~~gqyvltgl~~~~~khlllvdpe-gvvr-tkd~~fdsishli~yh~~~~lpiis~~sel~l~~pv~r~  344 (345)
T KOG3697|consen  277 TTPGQYVLTGLQSGQPKHLLLVDPE-GVVR-TKDRRFDSISHLINYHMDNHLPIISAGSELCLQQPVERK  344 (345)
T ss_pred             CCCccEEEecccCCCcceEEEECCc-ccee-cccchhhHHHHHHHHhhhccCceecCcchhhhhCccccc
Confidence            2 78899999889999999877544 3333 345799999999999999999988888888999999764

>KOG3751|consensus

Probab=97.91  E-value=3.8e-06  Score=86.07  Aligned_cols=95  Identities=26%  Similarity=0.392  Sum_probs=77.8

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCC--CCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCC-c---EEEecCCCCCCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRP--DGTFLIRPST--TGQYALSIVCSGAPKHCLVYETER-G---FGFAEPFNIYPS  485 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~--~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~-~---~~~~~~~~~F~s  485 (523)
                      .+..+.||| .|+|+++..++++.+  +|.||+|+|.  +-.|++++...++|+||.|...+. |   +....+...|.+
T Consensus       515 ~h~sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~~~~~~t~~~g~t~~sd  594 (622)
T KOG3751|consen  515 IHRSQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDDGCTFFTLDDGPTKFSD  594 (622)
T ss_pred             hcccccCcccccCchhhhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCCCceeeccCCCCccccc
Confidence            478889999 999999999997665  8999999998  777999999999999999997543 3   222334568999


Q ss_pred             HHHHHHHHhhCCccccCCccceeeccccc
Q psy8552         486 LGALVLHYAANSLEEHNDDLKTTLAYPVF  514 (523)
Q Consensus       486 l~~LV~~y~~~~l~~~~~~l~~~L~~pv~  514 (523)
                      +..||++|+-++     .-+.|.|+.-|.
T Consensus       595 ~~ql~~~~ql~k-----~~l~~al~~~~~  618 (622)
T KOG3751|consen  595 LIQLVEFYQLNK-----GVLPCALKHCCE  618 (622)
T ss_pred             cccccchhhcCC-----CcchHHHHHHHH
Confidence            999999999985     556777766543

>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation []

Probab=97.90  E-value=6e-05  Score=77.96  Aligned_cols=140  Identities=16%  Similarity=0.161  Sum_probs=103.4

Q ss_pred             CCCHHHHHHHHHHhccCCCCCCCccceEE---ecC-ChhHHHHHHH-HHhCCCCC--C-------CCCCCCHHHHHHHHH
Q psy8552          19 TSPFKSDNLKAASEHYSKPDCGLSAANLF---EPG-NASQVAELFH-AYSGEIKS--Y-------NFSKLEPALLAIMLK   84 (523)
Q Consensus        19 ~vP~vv~~~i~~l~~~~~~~~Gl~~eGif---R~~-~~~~v~~l~~-~~~~~~~~--~-------~~~~~d~~~va~lLK   84 (523)
                      .|=.+|..|.+.|..+     |+++++||   |.. ....++.+.. .|..+...  .       .+...++|+++++||
T Consensus         7 ev~~li~~~t~elK~r-----gldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LK   81 (420)
T PF08101_consen    7 EVKDLIHACTEELKSR-----GLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLK   81 (420)
T ss_pred             HHHHHHHHHHHHHHhc-----cCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHH
Confidence            4556889999999999     89999987   555 4466655555 44444321  0       122458999999999


Q ss_pred             HHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHH-hhcC-HHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhh
Q psy8552          85 TYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALV-QDFP-AHHFSALRYLMAHLARMCALQYARGVREPPTILIQ  162 (523)
Q Consensus        85 ~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~Lp-~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~  162 (523)
                      .-+..||..+++++.|..|...-+..+-  ...++..++ .+|| +.|..++.-++.+|..|+.|+..|+|+..  -+++
T Consensus        82 w~w~RLp~gvVgW~~Y~~Fk~~E~~~~y--p~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~Nglsgr--Klsr  157 (420)
T PF08101_consen   82 WIWSRLPGGVVGWDSYEEFKRREREAGY--PRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGR--KLSR  157 (420)
T ss_pred             HHHHHcCCCccccHHHHHHHHHHhhcCC--ChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHH--HHHH
Confidence            9999999999999999999876653322  123455555 5674 77788999999999999999888877644  6777


Q ss_pred             hhccc
Q psy8552         163 SFTFV  167 (523)
Q Consensus       163 ~~~~v  167 (523)
                      .+++.
T Consensus       158 m~g~W  162 (420)
T PF08101_consen  158 MAGIW  162 (420)
T ss_pred             HHHHH
Confidence            77754

>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A

Probab=97.17  E-value=0.0016  Score=61.68  Aligned_cols=76  Identities=21%  Similarity=0.281  Sum_probs=55.9

Q ss_pred             CcccccCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEE-CCeeEEEEEEEeCC------c-EEEecCCCCCCCHHH
Q psy8552         419 KTWLVRMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVC-SGAPKHCLVYETER------G-FGFAEPFNIYPSLGA  488 (523)
Q Consensus       419 ~~W~~~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~-~~~v~h~~I~~~~~------~-~~~~~~~~~F~sl~~  488 (523)
                      .|-|++++-.+|++.|..+..|.++||+|+  ....+++++. ++...|+.|.-.+.      | ...++ +..|.+|+|
T Consensus        38 HP~F~n~~~~qAe~~L~~~~~Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~~L~i~-~~~yeDLDE  116 (220)
T PF14633_consen   38 HPLFKNFNYKQAEEYLADQDVGEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEFSLGKTLKIG-GEEYEDLDE  116 (220)
T ss_dssp             STTEESS-HHHHHHHHCCS-TT-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTTS-SSEEEET-TEEESSHHH
T ss_pred             CCCccCCCHHHHHHHHhcCCCCCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCccccCcEEEEC-CeEECCHHH
Confidence            466779999999999998889999999999  3457888875 67777988885432      1 23333 468999999


Q ss_pred             HHHHHhh
Q psy8552         489 LVLHYAA  495 (523)
Q Consensus       489 LV~~y~~  495 (523)
                      ||..|-+
T Consensus       117 ii~r~V~  123 (220)
T PF14633_consen  117 IIARHVE  123 (220)
T ss_dssp             HHHHCHH
T ss_pred             HHHHHHH
Confidence            9998865

>KOG4566|consensus

Probab=97.15  E-value=0.00071  Score=65.24  Aligned_cols=88  Identities=25%  Similarity=0.467  Sum_probs=72.9

Q ss_pred             CcCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeC-----CC--Cc
Q psy8552         208 ETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS-----EP--FK  280 (523)
Q Consensus       208 ~~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~-----~~--~~  280 (523)
                      ....++..+||||.+++.+|+..|...+.|+|+||+|...+..+.|++......+-.+|.+.++.|..+     ..  ..
T Consensus        45 s~~~~~~~g~~w~~~~~~~~~~~l~~~p~~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~~sfr~ds~~~~~~pl~~  124 (258)
T KOG4566|consen   45 SLSLLDSSGHYWGLETANEAELCLGQEPRGTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQDSSFRLDSSHRHTPPLIS  124 (258)
T ss_pred             eeeccccCCcccccccchhHHHhhcCCCccceeeecCcCccccceeEeeeccCCCCccccccccceecccccccCCCccc
Confidence            355667789999999999999999888999999999998888899999988888888888766666552     22  47


Q ss_pred             cCCHHHHHHHHhhCC
Q psy8552         281 FTSVVELINYYKHES  295 (523)
Q Consensus       281 F~sl~~LV~~y~~~~  295 (523)
                      |+++..+++||+...
T Consensus       125 ~e~~~~~~~~y~~~~  139 (258)
T KOG4566|consen  125 FEDVEVLIHHYRQSR  139 (258)
T ss_pred             ChhHHHHHHhhhhhh
Confidence            999999999995543

>KOG4724|consensus

Probab=96.84  E-value=0.0009  Score=70.91  Aligned_cols=144  Identities=7%  Similarity=-0.065  Sum_probs=104.0

Q ss_pred             CcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecC-Ch-hHHHH---HHHHHhCCCCCCCCCCCCHHHHHHH
Q psy8552           8 LLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPG-NA-SQVAE---LFHAYSGEIKSYNFSKLEPALLAIM   82 (523)
Q Consensus         8 ~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~-~~-~~v~~---l~~~~~~~~~~~~~~~~d~~~va~l   82 (523)
                      ||...+ ..++..|..+.....-|...     +.+++++||.. .. ..++.   ....+..+...++.+...+|++|++
T Consensus       420 PlS~~c-~d~gk~prPlq~~~tll~kk-----np~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~taasv  493 (741)
T KOG4724|consen  420 PLSVFC-ADQGKTPRPLQIQSTLLKKK-----NPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVHTAASV  493 (741)
T ss_pred             chhhcc-cccCCCCCChhhhhHHHHhc-----CCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCchHHHHH
Confidence            444443 34555666666566667777     67788899885 32 22222   2222333222266677789999999


Q ss_pred             HHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHH--------HHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy8552          83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFA--------LVQDFPAHHFSALRYLMAHLARMCALQYARGVR  154 (523)
Q Consensus        83 LK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~  154 (523)
                      +|.|+|++|..++..+.+.++.++...++++++.++|+.        .....|..+....+....-...+..+++.++|+
T Consensus       494 ~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~~s~d  573 (741)
T KOG4724|consen  494 HKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEETSND  573 (741)
T ss_pred             HHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceeccccccccccc
Confidence            999999999999999999999999999999999999988        777888888877766666556666777777666


Q ss_pred             CCc
Q psy8552         155 EPP  157 (523)
Q Consensus       155 ~~~  157 (523)
                      ..|
T Consensus       574 sSn  576 (741)
T KOG4724|consen  574 SSN  576 (741)
T ss_pred             ccc
Confidence            553

>KOG4566|consensus

Probab=95.31  E-value=0.031  Score=54.04  Aligned_cols=82  Identities=21%  Similarity=0.322  Sum_probs=65.4

Q ss_pred             CCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEe----cCC--CCCCCH
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFA----EPF--NIYPSL  486 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~----~~~--~~F~sl  486 (523)
                      +....||+ ..+.++|+..|...+.|.|+||+|.  +..+.|++......+.-+|...++.+...    ...  ..|+++
T Consensus        49 ~~~~g~~w~~~~~~~~~~~l~~~p~~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~~sfr~ds~~~~~~pl~~~e~~  128 (258)
T KOG4566|consen   49 LDSSGHYWGLETANEAELCLGQEPRGTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQDSSFRLDSSHRHTPPLISFEDV  128 (258)
T ss_pred             cccCCcccccccchhHHHhhcCCCccceeeecCcCccccceeEeeeccCCCCccccccccceecccccccCCCcccChhH
Confidence            55668999 9999999999988889999999999  66789999998888888888766544331    122  479999


Q ss_pred             HHHHHHHhhCC
Q psy8552         487 GALVLHYAANS  497 (523)
Q Consensus       487 ~~LV~~y~~~~  497 (523)
                      ..+++||+...
T Consensus       129 ~~~~~~y~~~~  139 (258)
T KOG4566|consen  129 EVLIHHYRQSR  139 (258)
T ss_pred             HHHHHhhhhhh
Confidence            99999996654

>KOG1856|consensus

Probab=93.16  E-value=0.17  Score=57.62  Aligned_cols=80  Identities=24%  Similarity=0.310  Sum_probs=59.5

Q ss_pred             CCCcccccCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEE-CCeeEEEEEEEeCC------cEEEecCCCCCCCHH
Q psy8552         417 GEKTWLVRMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVC-SGAPKHCLVYETER------GFGFAEPFNIYPSLG  487 (523)
Q Consensus       417 ~~~~W~~~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~-~~~v~h~~I~~~~~------~~~~~~~~~~F~sl~  487 (523)
                      -..|.||+++-.+||.+|....-|.++||+|+  ....+++++. ++...|+.|.-.+.      |..+.-++..|..|.
T Consensus      1106 I~HP~F~n~n~eQAe~yL~~~d~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~~l~i~~e~feDLD 1185 (1299)
T KOG1856|consen 1106 IAHPLFKNLNAEQAEAYLSDMDQGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSLGKTLWIGGEEFEDLD 1185 (1299)
T ss_pred             hcCccccCCCHHHHHHHHHhcccccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccccceEEECCcccccHH
Confidence            34588999999999999999899999999999  4446666665 56666777764321      222222356999999


Q ss_pred             HHHHHHhhC
Q psy8552         488 ALVLHYAAN  496 (523)
Q Consensus       488 ~LV~~y~~~  496 (523)
                      |+|..|-+.
T Consensus      1186 EiI~r~vqp 1194 (1299)
T KOG1856|consen 1186 EIIARYVQP 1194 (1299)
T ss_pred             HHHHHHHHH
Confidence            999999765

>KOG1453|consensus

Probab=91.35  E-value=0.095  Score=60.55  Aligned_cols=132  Identities=23%  Similarity=0.243  Sum_probs=102.9

Q ss_pred             CCCCCCHHHHH-HHHHHhccCCCCCCCccceEEecCC-hhHHHHHHHHHhCCC-CCCCC----C-CCCHHHHHHHHHHHH
Q psy8552          16 SSTTSPFKSDN-LKAASEHYSKPDCGLSAANLFEPGN-ASQVAELFHAYSGEI-KSYNF----S-KLEPALLAIMLKTYL   87 (523)
Q Consensus        16 ~~~~vP~vv~~-~i~~l~~~~~~~~Gl~~eGifR~~~-~~~v~~l~~~~~~~~-~~~~~----~-~~d~~~va~lLK~fl   87 (523)
                      .....|.++.+ |.+.....     |....|+||.++ ...+...+..++... ...+.    . ..++...++.++.|+
T Consensus       476 ~~~~~~~~vs~~~~~e~~~~-----g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~sg~~~~~~  550 (918)
T KOG1453|consen  476 LNSNRPLSVSRSLERESRSP-----GALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNLHSGALKHYL  550 (918)
T ss_pred             hhcccCcccccchhcccCCC-----CcccccccccCCccccccchhhccCccccchhccCCCccccccchhccCcchhhh
Confidence            34557888888 66777777     888999999995 699999999999865 21111    1 124566777999999


Q ss_pred             hhc--CCCCCChhhHHHHH----------------HHhcCCChHHHH-------HHHHHHHh----hcCHHHHHHHHHHH
Q psy8552          88 KSL--TEPLIPYVYYEKFV----------------SLLSGSNDRHIG-------SRLFALVQ----DFPAHHFSALRYLM  138 (523)
Q Consensus        88 r~L--pePli~~~~~~~~~----------------~~~~~~~~~~~~-------~~~~~~l~----~Lp~~~~~~L~~l~  138 (523)
                      |.+  |.+......|..|+                ....+....+++       ..+..+..    .+|.....++.++.
T Consensus       551 r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~~~e~~~vP~i~~~c~~~ie  630 (918)
T KOG1453|consen  551 RSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELARYEPSTVPFILKKCLREIE  630 (918)
T ss_pred             hcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHHhhccCCCCCCHHHHHHHHHHH
Confidence            999  99999999999888                444444455555       67778888    99999999999999


Q ss_pred             HHHHHHHHhhhhcC
Q psy8552         139 AHLARMCALQYARG  152 (523)
Q Consensus       139 ~~l~~v~~~~~~n~  152 (523)
                      .|+.++...-.+|+
T Consensus       631 ~~~lr~eGiYRksG  644 (918)
T KOG1453|consen  631 AHLLRVEGIYRKSG  644 (918)
T ss_pred             Hhhhhccceeeccc
Confidence            99999999777664

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=87.47  E-value=0.084  Score=37.19  Aligned_cols=30  Identities=3%  Similarity=-0.358  Sum_probs=25.4

Q ss_pred             ccccccccccccchhHHHhhhhhccccccc
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSG  406 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~  406 (523)
                      .+.+.+++..+.+||.++...++.+|++|+
T Consensus        19 Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen   19 GDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             TEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            567777777777999999999899999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=85.16  E-value=0.11  Score=36.79  Aligned_cols=31  Identities=3%  Similarity=-0.371  Sum_probs=25.8

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVA  409 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~  409 (523)
                      .+++.++...+.+||.++.  ++..|++|++++
T Consensus        18 Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yV   48 (49)
T PF14604_consen   18 GDVITVLEKSDDGWWYGRN--TGRTGLFPANYV   48 (49)
T ss_dssp             TEEEEEEEESSTSEEEEEE--TTEEEEEEGGGE
T ss_pred             CCEEEEEEeCCCCEEEEEE--CCEEEEECHHhC
Confidence            5677777777889999985  779999999985

...

>KOG4257|consensus

Probab=84.56  E-value=0.52  Score=50.85  Aligned_cols=54  Identities=4%  Similarity=-0.014  Sum_probs=42.0

Q ss_pred             ccCccc------------hhHHHHHHhhcc----cchhhhhhhhchhcccccc-cccccc--ccccccchhHHHh
Q psy8552         340 SEPFKF------------TSVVELINYYKH----ESLSQYNSTLDTRLLYPVS-RFSSDV--DADIHSNDVDKYI  395 (523)
Q Consensus       340 ~~~~~~------------~~~~~avk~~~~----~~l~~~~~e~~ar~m~~l~-~~~~~l--~k~~~~~w~~~r~  395 (523)
                      .|+||.            +...||||+||.    ++-+.|+.|  |-+|+.+. |+++++  +-...+.|....+
T Consensus       399 ~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqE--a~iMrnfdHphIikLIGv~~e~P~WivmEL  471 (974)
T KOG4257|consen  399 EGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQE--ASIMRNFDHPHIIKLIGVCVEQPMWIVMEL  471 (974)
T ss_pred             CCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHH--HHHHHhCCCcchhheeeeeeccceeEEEec
Confidence            677887            567899999995    355669999  89999999 999999  4455667766433

>KOG3508|consensus

Probab=82.76  E-value=0.035  Score=62.01  Aligned_cols=54  Identities=15%  Similarity=0.329  Sum_probs=44.4

Q ss_pred             CCccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEE-CCeeEEEEEEE
Q psy8552         215 AEWYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRK-GGTNKLIKIFH  268 (523)
Q Consensus       215 ~~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~-~~~v~h~~I~~  268 (523)
                      ..||||++.|.-++..+.. ...|.++||++...++.+++++-. -+.+.|+++..
T Consensus        81 ~~~~~~~lrr~i~e~r~r~~e~s~~~wi~e~~~lp~~~~l~~~~~~d~~l~~r~~s  136 (932)
T KOG3508|consen   81 RKWYMENLRRTIAESRLRRAENSGSYWIREAKRLPGKGKLSCLLQLDGTLYARTIS  136 (932)
T ss_pred             hhhhhcchhhhcccchhhccCCceeEEeeccCcCCCcceeehhhccchhHHhhhhh
Confidence            4799999999999999765 477999999999999999998763 23377888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	523
2rd0_B	279	Structure Of A Human P110alpha/p85alpha Complex Len		7e-45
2rd0_B	279	Structure Of A Human P110alpha/p85alpha Complex Len		2e-10
2rd0_B	279	Structure Of A Human P110alpha/p85alpha Complex Len		1e-07
3hhm_B	373	Crystal Structure Of P110alpha H1047r Mutant In Com		5e-44
3hhm_B	373	Crystal Structure Of P110alpha H1047r Mutant In Com		6e-16
2iug_A	120	Crystal Structure Of The Pi3-Kinase P85 N-Terminal		2e-43
2iug_A	120	Crystal Structure Of The Pi3-Kinase P85 N-Terminal		2e-10
2iug_A	120	Crystal Structure Of The Pi3-Kinase P85 N-Terminal		1e-07
2pna_A	104	Structure Of An Sh2 Domain Of The P85 Alpha Subunit		7e-42
2pna_A	104	Structure Of An Sh2 Domain Of The P85 Alpha Subunit		4e-09
2pna_A	104	Structure Of An Sh2 Domain Of The P85 Alpha Subunit		3e-07
1fu5_A	111	Nmr Structure Of The N-Sh2 Domain Of The P85 Subuni		1e-41
1fu5_A	111	Nmr Structure Of The N-Sh2 Domain Of The P85 Subuni		3e-09
1fu5_A	111	Nmr Structure Of The N-Sh2 Domain Of The P85 Subuni		1e-07
1oo3_A	111	P395s Mutant Of The P85 Regulatory Subunit Of The N		6e-41
1oo3_A	111	P395s Mutant Of The P85 Regulatory Subunit Of The N		3e-08
1oo3_A	111	P395s Mutant Of The P85 Regulatory Subunit Of The N		9e-07
2y3a_B	302	Crystal Structure Of P110beta In Complex With Icsh2		8e-29
1bfi_A	112	Solution Structure Of The C-Terminal Sh2 Domain Of		1e-25
1qad_A	111	Crystal Structure Of The C-Terminal Sh2 Domain Of T		1e-25
1h9o_A	112	Phosphatidylinositol 3-Kinase, P85-Alpha Subunit: C		2e-25
2vif_A	141	Crystal Structure Of Socs6 Sh2 Domain In Complex Wi		1e-10
2lct_A	107	Solution Structure Of The Vav1 Sh2 Domain Complexed		1e-09
2lct_A	107	Solution Structure Of The Vav1 Sh2 Domain Complexed		1e-05
2crh_A	138	Solution Structure Of The Sh2 Domain Of Human Proto		2e-09
2crh_A	138	Solution Structure Of The Sh2 Domain Of Human Proto		3e-06
2dlz_A	118	Solution Structure Of The Sh2 Domain Of Human Prote		7e-09
2dlz_A	118	Solution Structure Of The Sh2 Domain Of Human Prote		4e-08
2lnw_A	122	Identification And Structural Basis For A Novel Int		9e-09
2lnw_A	122	Identification And Structural Basis For A Novel Int		2e-06
2c9w_A	169	Crystal Structure Of Socs-2 In Complex With Elongin		3e-07
1rja_A	100	Solution Structure And Backbone Dynamics Of The Non		4e-07
3s9k_A	118	Crystal Structure Of The Itk Sh2 Domain Length = 11		2e-06
2k79_B	110	Solution Structure Of The Binary Complex Between Th		2e-06
1aot_F	106	Nmr Structure Of The Fyn Sh2 Domain Complexed With		2e-06
1lui_A	110	Nmr Structures Of Itk Sh2 Domain, Pro287cis Isoform		2e-06
2etz_A	109	The Nmr Minimized Average Structure Of The Itk Sh2		2e-06
2dm0_A	125	Solution Structure Of The Sh2 Domain Of Human Tyros		4e-06
2ge9_A	125	Solution Structures Of The Sh2 Domain Of Bruton's T		6e-06
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		7e-06
1g83_A	165	Crystal Structure Of Fyn Sh3-Sh2 Length = 165		7e-06
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		7e-06
2ecd_A	119	Solution Structure Of The Human Abl2 Sh2 Domain Len		9e-06
2dly_A	121	Solution Structure Of The Sh2 Domain Of Murine Fyn-		1e-05
2eob_A	124	Solution Structure Of The Second Sh2 Domain From Ra		1e-05
3nhn_A	193	Crystal Structure Of The Src-Family Kinase Hck Sh3-		2e-05
1jwo_A	97	Crystal Structure Analysis Of The Sh2 Domain Of The		3e-05
2ci8_A	99	Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomple		4e-05
1jyq_A	96	Xray Structure Of Grb2 Sh2 Domain Complexed With A		4e-05
1ghu_A	107	Nmr Solution Structure Of Growth Factor Receptor-Bo		5e-05
1fhs_A	112	The Three-Dimensional Solution Structure Of The Src		5e-05
2aoa_A	99	Crystal Structures Of A High-affinity Macrocyclic P		5e-05
2cia_A	102	Human Nck2 Sh2-Domain In Complex With A Decaphospho		5e-05
3n84_A	112	Crystal Structure Of The Grb2 Sh2 Domain In Complex		5e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		6e-05
1tze_E	98	Signal Transduction Adaptor Growth Factor, Grb2 Sh2		6e-05
3mxc_A	101	Structures Of Grb2-Sh2 Domain And Aicd Peptide Comp		6e-05
1x0n_A	104	Nmr Structure Of Growth Factor Receptor Binding Pro		6e-05
2ekx_A	110	Solution Structure Of The Human Bmx Sh2 Domain Leng		6e-05
1cj1_A	96	Growth Factor Receptor Binding Protein Sh2 Domain (		6e-05
3ove_A	117	Crystal Structure Of The Grb2 Sh2 Domain In Complex		6e-05
3imd_A	117	Crystal Structure Of The Grb2 Sh2 Domain In Complex		6e-05
2h46_E	116	Native Domain-Swapped Dimer Crystal Structure Of Th		6e-05
1zfp_E	98	Growth Factor Receptor Binding Protein Sh2 Domain C		6e-05
3t04_A	123	Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN C		6e-05
1bmb_A	123	Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-9		6e-05
1fyr_A	114	Dimer Formation Through Domain Swapping In The Crys		7e-05
2oq1_A	254	Tandem Sh2 Domains Of Zap-70 With 19-Mer Zeta1 Pept		7e-05
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		7e-05
3uf4_A	164	Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn P		8e-05
1bm2_A	117	Grb2-Sh2 Domain In Complex With Cyclo-[n-Alpha-Acet		8e-05
1z3k_A	98	Structural Insight Into The Binding Diversity Betwe		8e-05
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		8e-05
1m61_A	259	Crystal Structure Of The Apo Sh2 Domains Of Zap-70		8e-05
3hck_A	107	Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domai		9e-05
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		9e-05
3eaz_A	106	Crystal Structure Of Sh2 Domain Of Human Csk (Carbo		9e-05
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		9e-05
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		1e-04
3iug_A	229	Crystal Structure Of The Rhogap Domain Of Rics Leng		1e-04
3eac_A	106	Crystal Structure Of Sh2 Domain Of Human Csk (Carbo		1e-04
3us4_A	98	Crystal Structure Of A Sh2 Domain Of A Megakaryocyt		1e-04
2ci9_A	102	Nck1 Sh2-Domain In Complex With A Dodecaphosphopept		1e-04
1ab2_A	109	Three-Dimensional Solution Structure Of The Src Hom		1e-04
1mil_A	104	Transforming Protein Length = 104		1e-04
1a1a_A	107	C-Src (Sh2 Domain With C188a Mutation) Complexed Wi		2e-04
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		2e-04
1shd_A	107	Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein In		2e-04
2abl_A	163	Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine K		2e-04
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		2e-04
1gri_A	217	Grb2 Length = 217		2e-04
3tl0_A	109	Structure Of Shp2 N-Sh2 Domain In Complex With Rlnp		2e-04
2eyv_A	124	Sh2 Domain Of Ct10-Regulated Kinase Length = 124		3e-04
2bbu_A	164	Solution Structure Of Mouse Socs3 In Complex With A		3e-04
1o41_A	108	Crystal Structure Of Sh2 In Complex With Ru78300. L		3e-04
4fbn_A	246	Insights Into Structural Integration Of The Plcgamm		3e-04
4ey0_A	246	Structure Of Tandem Sh2 Domains From Plcgamma1 Leng		3e-04
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		3e-04
4f59_A	112	Triple Mutant Src Sh2 Domain Length = 112		3e-04
1tce_A	107	Solution Nmr Structure Of The Shc Sh2 Domain Comple		3e-04
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		3e-04
3gqi_B	226	Crystal Structure Of Activated Receptor Tyrosine Ki		3e-04
3k2m_A	112	Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN CO		3e-04
1o4c_A	108	Crystal Structure Of Sh2 In Complex With Phosphate.		3e-04
1aya_A	101	Crystal Structures Of Peptide Complexes Of The Amin		4e-04
3byi_A	214	Crystal Structure Of Human Rho Gtpase Activating Pr		4e-04
1kc2_A	103	Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c		4e-04
1ju5_A	109	Ternary Complex Of An Crk Sh2 Domain, Crk-Derived P		4e-04
2ngr_B	234	Transition State Complex For Gtp Hydrolysis By Cdc4		4e-04
2eyz_A	304	Ct10-Regulated Kinase Isoform Ii Length = 304		4e-04
1grn_B	203	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX		5e-04
2lqw_A	303	Solution Structure Of Phosphorylated Crkl Length =		5e-04
1ow3_A	242	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		5e-04
2lqn_A	303	Solution Structure Of Crkl Length = 303		5e-04
1am4_A	199	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		5e-04
1tx4_A	198	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198		6e-04
2dvj_A	230	Phosphorylated Crk-Ii Length = 230		6e-04
2dvj_A	230	Phosphorylated Crk-Ii Length = 230		6e-04
2hmh_A	152	Crystal Structure Of Socs3 In Complex With Gp130(Pt		6e-04
2eo6_A	141	Solution Structure Of The Sh2 Domain From Mouse B-C		6e-04
2shp_A	525	Tyrosine Phosphatase Shp-2 Length = 525		7e-04
2eyy_A	204	Ct10-Regulated Kinase Isoform I Length = 204		7e-04

>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex Length = 279

Iteration: 1
 Score =  178 bits (451), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 97/108 (89%), Gaps = 1/108 (0%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHR 269
           SL+DAEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NKLIKIFHR
Sbjct: 6   SLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHR 65
Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
           +G+YGFS+P  F+SVVELIN+Y++ESL+QYN  LD +LLYPVS++  D
Sbjct: 66  DGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 113

>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex Length = 279

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 36/43 (83%)
Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 381
           FS+P  F+SVVELIN+Y++ESL+QYN  LD +LLYPVS++  D
Sbjct: 71  FSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 113

>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex Length = 279

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
           +SR +    L    DGTFL+R ++T   G Y L++   G  K   ++  +  +GF++P  
Sbjct: 17  ISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL- 75
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + S+  L+ HY   SL ++N  L   L YPV
Sbjct: 76  TFSSVVELINHYRNESLAQYNPKLDVKLLYPV 107

>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex With Nish2 Of P85alpha And The Drug Wortmannin Length = 373

Iteration: 1
 Score =  175 bits (444), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 79/108 (73%), Positives = 97/108 (89%), Gaps = 1/108 (0%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHR 269
           SL++AEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NKLIKIFHR
Sbjct: 6   SLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHR 65
Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
           +G+YGFS+P  F+SVVELIN+Y++ESL+QYN  LD +LLYPVS++  D
Sbjct: 66  DGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 113

>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex With Nish2 Of P85alpha And The Drug Wortmannin Length = 373

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 418 EKTWLVRMS-RAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFG 475
           EKTW V  S R +AE LL G+ DGTFL+R S+  G YA S+V  G  KHC++ +T  G+G
Sbjct: 300 EKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYG 359
Query: 476 FAEPFNIYPSLGAL 489
           FAEP+N+Y SL  L
Sbjct: 360 FAEPYNLYSSLKEL 373

>pdb|2IUG|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2 Domain Length = 120

Iteration: 1
 Score =  173 bits (439), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 79/108 (73%), Positives = 97/108 (89%), Gaps = 1/108 (0%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHR 269
           SL++AEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NKLIKIFHR
Sbjct: 7   SLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHR 66
Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
           +G+YGFS+P  F+SVVELIN+Y++ESL+QYN  LD +LLYPVS++  D
Sbjct: 67  DGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 114

>pdb|2IUG|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2 Domain Length = 120

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 36/43 (83%)
Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 381
           FS+P  F+SVVELIN+Y++ESL+QYN  LD +LLYPVS++  D
Sbjct: 72  FSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 114

>pdb|2IUG|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2 Domain Length = 120

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 407 AVASTVDFESGEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPK 463
            + + +  ++ E  W   +SR +    L    DGTFL+R ++T   G Y L++   G  K
Sbjct: 1   GMNNNMSLQNAEWYW-GDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNK 59
Query: 464 HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
              ++  +  +GF++P   + S+  L+ HY   SL ++N  L   L YPV
Sbjct: 60  LIKIFHRDGKYGFSDPL-TFSSVVELINHYRNESLAQYNPKLDVKLLYPV 108

>pdb|2PNA|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of Phosphatidylinositol-3-Oh Kinase Length = 104

Iteration: 1
 Score =  168 bits (426), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 93/103 (90%), Gaps = 1/103 (0%)
Query: 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHRN 270
           L+DAEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NKLIKIFHR+
Sbjct: 1   LQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRD 60
Query: 271 GRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
           G+YGFS+P  F SVVELIN+Y++ESL+QYN  LD +LLYPVS+
Sbjct: 61  GKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSK 103

>pdb|2PNA|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of Phosphatidylinositol-3-Oh Kinase Length = 104

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 33/39 (84%)
Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
           FS+P  F SVVELIN+Y++ESL+QYN  LD +LLYPVS+
Sbjct: 65  FSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSK 103

>pdb|2PNA|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of Phosphatidylinositol-3-Oh Kinase Length = 104

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
           +SR +    L    DGTFL+R ++T   G Y L++   G  K   ++  +  +GF++P  
Sbjct: 11  ISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL- 69
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + S+  L+ HY   SL ++N  L   L YPV
Sbjct: 70  TFNSVVELINHYRNESLAQYNPKLDVKLLYPV 101

>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide Derived From Polyomavirus Middle T Antigen Length = 111

Iteration: 1
 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/104 (75%), Positives = 93/104 (89%), Gaps = 1/104 (0%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHR 269
           SL+DAEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NK IKIFHR
Sbjct: 7   SLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHR 66
Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
           +G+YGFS+P  F SVVELIN+Y++ESL+QYN  LD +LLYPVS+
Sbjct: 67  DGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSK 110

>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide Derived From Polyomavirus Middle T Antigen Length = 111

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 33/39 (84%)
Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
           FS+P  F SVVELIN+Y++ESL+QYN  LD +LLYPVS+
Sbjct: 72  FSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSK 110

>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide Derived From Polyomavirus Middle T Antigen Length = 111

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
           +SR +    L    DGTFL+R ++T   G Y L++   G  K   ++  +  +GF++P  
Sbjct: 18  ISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKYGFSDPL- 76
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + S+  L+ HY   SL ++N  L   L YPV
Sbjct: 77  TFNSVVELINHYRNESLAQYNPKLDVKLLYPV 108

>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N- Terminal Src Homology 2 Domain Of Pi3-Kinase Length = 111

Iteration: 1
 Score =  165 bits (417), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 77/104 (74%), Positives = 92/104 (88%), Gaps = 1/104 (0%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHR 269
           SL+DAEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NK IKIFHR
Sbjct: 7   SLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHR 66
Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
           +G+YGFS+   F SVVELIN+Y++ESL+QYN  LD +LLYPVS+
Sbjct: 67  DGKYGFSDSLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSK 110

>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N- Terminal Src Homology 2 Domain Of Pi3-Kinase Length = 111

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
           FS+   F SVVELIN+Y++ESL+QYN  LD +LLYPVS+
Sbjct: 72  FSDSLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSK 110

>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N- Terminal Src Homology 2 Domain Of Pi3-Kinase Length = 111

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
           +SR +    L    DGTFL+R ++T   G Y L++   G  K   ++  +  +GF++   
Sbjct: 18  ISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKYGFSDSL- 76
Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + S+  L+ HY   SL ++N  L   L YPV
Sbjct: 77  TFNSVVELINHYRNESLAQYNPKLDVKLLYPV 108

>pdb|2Y3A|B Chain B, Crystal Structure Of P110beta In Complex With Icsh2 Of P85beta And The Drug Gdc-0941 Length = 302

Iteration: 1
 Score =  125 bits (313), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 74/104 (71%), Gaps = 2/104 (1%)
Query: 418 EKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFG 475
           E+TW V +++R QAE +LSG+ DGTFLIR S+  G YA S+V  G  KHC++Y T  GFG
Sbjct: 193 ERTWYVGKINRTQAEEMLSGKRDGTFLIRESSQRGCYACSVVVDGDTKHCVIYRTATGFG 252
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG 519
           FAEP+N+Y SL  LVLHY   SL +HND L  TLA+PV AP  G
Sbjct: 253 FAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRAPGPG 296

>pdb|1BFI|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The P85alpha Regulatory Subunit Of Phosphoinositide 3-Kinase, Nmr, 30 Structures Length = 112

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 70/100 (70%), Gaps = 2/100 (2%)
Query: 418 EKTWLVRMS-RAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFG 475
           EKTW V  S R +AE LL G+ DGTFL+R S+  G YA S+V  G  KHC++ +T  G+G
Sbjct: 9   EKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYG 68
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 515
           FAEP+N+Y SL  LVLHY   SL +HND L  TLAYPV+A
Sbjct: 69  FAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 108

>pdb|1QAD|A Chain A, Crystal Structure Of The C-Terminal Sh2 Domain Of The P85 Alpha Regulatory Subunit Of Phosphoinositide 3-Kinase: An Sh2 Domain Mimicking Its Own Substrate Length = 111

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 70/100 (70%), Gaps = 2/100 (2%)
Query: 418 EKTWLVRMS-RAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFG 475
           EKTW V  S R +AE LL G+ DGTFL+R S+  G YA S+V  G  KHC++ +T  G+G
Sbjct: 8   EKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYG 67
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 515
           FAEP+N+Y SL  LVLHY   SL +HND L  TLAYPV+A
Sbjct: 68  FAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 107

>pdb|1H9O|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit: C-Terminal Sh2 Domain Complexed With A Tyr751 Phosphopeptide From The Pdgf Receptor, Crystal Structure At 1.79 A Length = 112

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 70/100 (70%), Gaps = 2/100 (2%)
Query: 418 EKTWLVRMS-RAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFG 475
           EKTW V  S R +AE LL G+ DGTFL+R S+  G YA S+V  G  KHC++ +T  G+G
Sbjct: 9   EKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYG 68
Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 515
           FAEP+N+Y SL  LVLHY   SL +HND L  TLAYPV+A
Sbjct: 69  FAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 108

>pdb|2VIF|A Chain A, Crystal Structure Of Socs6 Sh2 Domain In Complex With A C-Kit Phosphopeptide Length = 141

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 198 LDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRK 257
           +DV  ++   E   L    WYWG I+R +   KLA+  DG+FLVRD+S      +L+ R 
Sbjct: 9   MDVTSLTE--ELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRS 66
Query: 258 GGTNKLIKIFHRNGRYGFSEP---FKFTSVVELINYYKHESLSQY----------NSTLD 304
            G     +I H NGR+ F E       TS+V+LI +   +S +            ++T  
Sbjct: 67  HGKTLHTRIEHSNGRFSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSATYP 126
Query: 305 TRLLYPVSRF 314
            RL  PVSRF
Sbjct: 127 VRLTNPVSRF 136

>pdb|2LCT|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A Syk-Derived Doubly Phosphorylated Peptide Length = 107

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 47/94 (50%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
           WY G + R      LA+ +DGTFLVR       E+ ++++     K IKI    G Y  +
Sbjct: 11  WYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRIT 70
Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
           E   F  + EL+ +Y+  SL     +LDT L +P
Sbjct: 71  EKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFP 104

>pdb|2LCT|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A Syk-Derived Doubly Phosphorylated Peptide Length = 107

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
           M RA AE++L+ R DGTFL+R       ++A+SI  +   KH  +   E  +   E    
Sbjct: 16  MERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEK-KA 74
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
           +  L  LV  Y  NSL++    L TTL +P
Sbjct: 75  FRGLTELVEFYQQNSLKDCFKSLDTTLQFP 104

>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto- Oncogene Protein Vav1 Length = 138

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
           WY G + R      LA+ +DGTFLVR       E+ ++++     K IKI    G Y  +
Sbjct: 28  WYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRIT 87
Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
           E   F  + EL+ +Y+  SL     +LDT L +P
Sbjct: 88  EKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFP 121

>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto- Oncogene Protein Vav1 Length = 138

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 425 MSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
           M RA AE++L+ R DGTFL+R       ++A+SI  +   KH  +   E  +   E    
Sbjct: 33  MERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEK-KA 91
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
           +  L  LV  Y  NSL++    L TTL +P   P
Sbjct: 92  FRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKEP 125

>pdb|2DLZ|A Chain A, Solution Structure Of The Sh2 Domain Of Human Protein Vav-2 Length = 118

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
           W+ G++ R   ++ L   A GT+L+R+   +   + ++++     K IK+  ++     +
Sbjct: 18  WFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHIT 77
Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
           E  KF S++EL+ YY+  SL +    LDT L YP S
Sbjct: 78  EAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYS 113

>pdb|2DLZ|A Chain A, Solution Structure Of The Sh2 Domain Of Human Protein Vav-2 Length = 118

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 425 MSRAQAEALLSGRPDGTFLIR--PSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
           M R Q + LL     GT+LIR  P+   ++A+SI  +   KH  V E +      E    
Sbjct: 23  MERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEA-KK 81
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG 519
           + SL  LV +Y  +SL+E    L TTL YP   P+SG
Sbjct: 82  FDSLLELVEYYQCHSLKESFKQLDTTLKYPYSGPSSG 118

>pdb|2LNW|A Chain A, Identification And Structural Basis For A Novel Interaction Between Vav2 And Arap3 Length = 122

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 51/94 (54%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
           W+ G++ R   ++ L   A GT+L+R+   +   + ++++     K IK+  ++     +
Sbjct: 24  WFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHIT 83
Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
           E  KF S++EL+ YY+  SL +    LDT L YP
Sbjct: 84  EAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYP 117

>pdb|2LNW|A Chain A, Identification And Structural Basis For A Novel Interaction Between Vav2 And Arap3 Length = 122

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 425 MSRAQAEALLSGRPDGTFLIR--PSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
           M R Q + LL     GT+LIR  P+   ++A+SI  +   KH  V E +      E    
Sbjct: 29  MERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEA-KK 87
Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
           + SL  LV +Y  +SL+E    L TTL YP
Sbjct: 88  FDSLLELVEYYQCHSLKESFKQLDTTLKYP 117

>pdb|2C9W|A Chain A, Crystal Structure Of Socs-2 In Complex With Elongin-B And Elongin-C At 1.9a Resolution Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 9/102 (8%)
Query: 197 SLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLR 256
           S+  A+++       L    WYWG ++ ++  +KL +  +GTFL+RD+S  +   T++++
Sbjct: 1   SMQAARLAKA--LRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVK 58
Query: 257 KGGTNKLIKIFHRNGRYGF-------SEPFKFTSVVELINYY 291
                  ++I +++G++         S+  +F SVV LI+YY
Sbjct: 59  TSAGPTNLRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYY 100

>pdb|1RJA|A Chain A, Solution Structure And Backbone Dynamics Of The Nonreceptor Tyrosine Kinase Ptk6BRK SH2 DOMAIN Length = 100

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 217 WYWGDISRDDVNDKLA--DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NGRY 273
           W++G ISR +   +L     A G FL+R +   + +Y L++R     +  KI+ R  GR 
Sbjct: 4   WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRL 63
Query: 274 GFSEPFKFTSVVELINYYKHESLSQ 298
             +E   F S+ EL+NY++ +SLS 
Sbjct: 64  HLNEAVSFLSLPELVNYHRAQSLSH 88

>pdb|3S9K|A Chain A, Crystal Structure Of The Itk Sh2 Domain Length = 118

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGT---NKLIK 265
           N+L   EWY   ISRD     L DT  +G F+VRD+ T  G YT+++        N  IK
Sbjct: 4   NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCIK 62
Query: 266 IFHRN------GRYGFSEPFKFTSVVELINYYKHESLSQYN-STLDTRLLYPVS 312
            +H         RY  +E + F S+  LI Y+      QYN   L TRL YPV 
Sbjct: 63  HYHIKETNDSPKRYYVAEKYVFDSIPLLIQYH------QYNGGGLVTRLRYPVC 110

>pdb|2K79|B Chain B, Solution Structure Of The Binary Complex Between The Sh3 And Sh2 Domain Of Interleukin-2 Tyrosine Kinase Length = 110

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGT---NKLI 264
           +N+L   EWY   ISRD     L DT  +G F+VRD+ T  G YT+++        N  I
Sbjct: 2   SNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCI 60
Query: 265 KIFHRN------GRYGFSEPFKFTSVVELINYYKHESLSQYN-STLDTRLLYPVS 312
           K +H         RY  +E + F S+  LI Y+      QYN   L TRL YPV 
Sbjct: 61  KHYHIKETNDSPKRYYVAEKYVFDSIPLLIQYH------QYNGGGLVTRLRYPVC 109

>pdb|1AOT|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A Phosphotyrosyl Peptide, Minimized Average Structure Length = 106

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 13/108 (12%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLR-----KGGTNKL 263
           S++  EWY+G + R D   +L    +  GTFL+R++ T  G Y+L++R     KG   K 
Sbjct: 1   SIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKH 60
Query: 264 IKIFH-RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
            KI    NG Y  +   +F ++ +L+ +Y     S+  + L +RL+ P
Sbjct: 61  YKIRKLDNGGYYITTRAQFETLQQLVQHY-----SERAAGLSSRLVVP 103

>pdb|1LUI|A Chain A, Nmr Structures Of Itk Sh2 Domain, Pro287cis Isoform, Ensemble Of 20 Low Energy Structures Length = 110

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGT---NKLIK 265
           N+L   EWY   ISRD     L DT  +G F+VRD+ T  G YT+++        N  IK
Sbjct: 2   NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCIK 60
Query: 266 IFHRN------GRYGFSEPFKFTSVVELINYYKHESLSQYN-STLDTRLLYPVS 312
            +H         RY  +E + F S+  LI Y+      QYN   L TRL YPV 
Sbjct: 61  HYHIKETNDSPKRYYVAEKYVFDSIPLLIQYH------QYNGGGLVTRLRYPVC 108

>pdb|2ETZ|A Chain A, The Nmr Minimized Average Structure Of The Itk Sh2 Domain Bound To A Phosphopeptide Length = 109

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGT---NKLIK 265
           N+L   EWY   ISRD     L DT  +G F+VRD+ T  G YT+++        N  IK
Sbjct: 2   NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCIK 60
Query: 266 IFHRN------GRYGFSEPFKFTSVVELINYYKHESLSQYN-STLDTRLLYPVS 312
            +H         RY  +E + F S+  LI Y+      QYN   L TRL YPV 
Sbjct: 61  HYHIKETNDSPKRYYVAEKYVFDSIPLLIQYH------QYNGGGLVTRLRYPVC 108

>pdb|2DM0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Tyrosine- Protein Kinase Txk Length = 125

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 14/121 (11%)
Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTLRKGG--- 259
           SSG +  +L   EWY  +I+R+     L  ++ +G F+VRD S   G YT+++  G    
Sbjct: 5   SSGNKITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRD-SRHLGSYTISVFMGARRS 63
Query: 260 TNKLIKIF----HRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFS 315
           T   IK +    + +G++  +E   F S+ ELI Y++H +     + L TRL YPV    
Sbjct: 64  TEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNA-----AGLMTRLRYPVGLMG 118
Query: 316 S 316
           S
Sbjct: 119 S 119

>pdb|2GE9|A Chain A, Solution Structures Of The Sh2 Domain Of Bruton's Tyrosine Kinase Length = 125

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 210 NSLRDAEWYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
           +S+   EWY   ++R      L  +  +G F+VRD+S K G+YT+++    T     +  
Sbjct: 6   DSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSS-KAGKYTVSVFAKSTGDPQGVIR 64
Query: 269 R-------NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
                     +Y  +E   F+++ ELINY++H S     + L +RL YPVS+
Sbjct: 65  HYVVCSTPQSQYYLAEKHLFSTIPELINYHQHNS-----AGLISRLKYPVSQ 111

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTL-----RKGGTN 261
            +SL   EW++  ISR D   +L    +  G+F++RD+ T  G Y+L++     R+G T 
Sbjct: 58  VDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTV 117
Query: 262 KLIKIFH-RNGRYGFSEPFKFTSVVELINYYK 292
           K  KI    NG +  S    F+++ EL+++YK
Sbjct: 118 KHYKIRTLDNGGFYISPRSTFSTLQELVDHYK 149

>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2 Length = 165

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 13/109 (11%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLR-----KGGTNK 262
           +S++  EWY+G + R D   +L    +  GTFL+R++ T  G Y+L++R     KG   K
Sbjct: 61  DSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVK 120
Query: 263 LIKIFH-RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
             KI    NG Y  +   +F ++ +L+ +Y     S+  + L +RL+ P
Sbjct: 121 HYKIRKLDNGGYYITTRAQFETLQQLVQHY-----SERAAGLSSRLVVP 164

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTL-----RKGGTN 261
            +SL   EW++  ISR D   +L    +  G+F++RD+ T  G Y+L++     R+G T 
Sbjct: 64  VDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTV 123
Query: 262 KLIKIFH-RNGRYGFSEPFKFTSVVELINYYK 292
           K  KI    NG +  S    F+++ EL+++YK
Sbjct: 124 KHYKIRTLDNGGFYISPRSTFSTLQELVDHYK 155

>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain Length = 119

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 16/116 (13%)
Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKL 263
           SSG   NSL    WY G +SR      L+   +G+FLVR++ +  G+ +++LR  G    
Sbjct: 5   SSGTPVNSLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEG---- 60
Query: 264 IKIFH------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
            +++H       +G+   +   +F+++ EL++++     S     L T L YP  +
Sbjct: 61  -RVYHYRINTTADGKVYVTAESRFSTLAELVHHH-----STVADGLVTTLHYPAPK 110

>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine Fyn-Related Kinase Length = 121

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTN 261
           SSG E  SL+   W++G I R D   +L  ++   G FL+R++ ++ G+++L++   G  
Sbjct: 5   SSGAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVV 64
Query: 262 KLIKIFHRN-GRYGFSEPFKFTSVVELINYY 291
           K  +I   + G +  +    F+++ E +NYY
Sbjct: 65  KHYRIRRLDEGGFFLTRRKVFSTLNEFVNYY 95

>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc Gamma-2 Length = 124

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIK 265
           P  N      WY+  +SR +  D L     DG FL+R     +  Y +T R  G  K  +
Sbjct: 11  PNPNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGTD-SYAITFRARGKVKHCR 69
Query: 266 IFHRNGR-YGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
           I +R+GR +       F S+VEL++YY+  +L +       RL YPV+
Sbjct: 70  I-NRDGRHFVLGTSAYFESLVELVSYYEKHALYR-----KMRLRYPVT 111

>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck Sh3-Sh2-Linker Regulatory Region Length = 193

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTL-----RKGGTN 261
            +SL   EW++  ISR D   +L    +  G+F++RD+ T  G Y+L++     R+G T 
Sbjct: 65  VDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTV 124
Query: 262 KLIKIFH-RNGRYGFSEPFKFTSVVELINYYK 292
           K  KI    NG +  S    F+++ EL+++YK
Sbjct: 125 KHYKIRTLDNGGFYISPRSTFSTLQELVDHYK 156

>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk Homologous Kinase Chk Length = 97

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
           W+ G IS  +   +L    DG FLVR+++   G+Y L +  G      ++ HR+G     
Sbjct: 6   WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID 65
Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
           E   F ++++++ +Y     S+    + T+L+ P
Sbjct: 66  EAVFFCNLMDMVEHY-----SKDKGAICTKLVRP 94

>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed Length = 99

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           WY+G ++R      L +   +G FL+RD+ +   +++++L+  G NK  K+  +   Y  
Sbjct: 3   WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCI 62
Query: 276 SEPFKFTSVVELINYYK 292
            +  KF+++ EL+ +YK
Sbjct: 63  GQR-KFSTMEELVEHYK 78

>pdb|1JYQ|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A Highly Affine Phospho Peptide Length = 96

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        F
Sbjct: 5   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
               KF S+ EL++Y++  S+S+
Sbjct: 65  LWVVKFNSLNELVDYHRSTSVSR 87

>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound Protein 2 (Grb2) Sh2 Domain, 24 Structures Length = 107

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        F
Sbjct: 3   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 62
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
               KF S+ EL++Y++  S+S+
Sbjct: 63  LWVVKFNSLNELVDYHRSTSVSR 85

>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src Homology Domain-2 Of The Growth Factor Receptor Bound Protein-2, Nmr, 18 Structures Length = 112

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        F
Sbjct: 9   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 68
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
               KF S+ EL++Y++  S+S+
Sbjct: 69  LWVVKFNSLNELVDYHRSTSVSR 91

>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic Peptide Mimetic In Complex With The Grb2 Sh2 Domain Length = 99

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        F
Sbjct: 6   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 65
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
               KF S+ EL++Y++  S+S+
Sbjct: 66  LWVVKFNSLNELVDYHRSTSVSR 88

>pdb|2CIA|A Chain A, Human Nck2 Sh2-Domain In Complex With A Decaphosphopeptide From Translocated Intimin Receptor (Tir) Of Epec Length = 102

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 215 AEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRY 273
           +EWY+G+++R      L +   +G FL+RD+ +   +++++L+  G NK  K+   +  Y
Sbjct: 5   SEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVY 64
Query: 274 GFSEPFKFTSVVELINYYK 292
              +  +F ++ EL+ +YK
Sbjct: 65  CIGQR-RFHTMDELVEHYK 82

>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A 23-Membered Macrocyclic Ligand Having The Sequence Pyvnvp Length = 112

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        F
Sbjct: 9   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 68
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
               KF S+ EL++Y++  S+S+
Sbjct: 69  LWVVKFNSLNELVDYHRSTSVSR 91

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 188 ATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK 247
           A YV  R+      K+S  P         W+ G I+R+     L     G FLVR+++  
Sbjct: 62  ANYVQKREGVKAGTKLSLMP---------WFHGKITREQAERLLYPPETGLFLVRESTNY 112
Query: 248 NGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRL 307
            G+YTL +   G  +  +I +   +    E   F ++++L+ +Y  ++       L TRL
Sbjct: 113 PGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHYTTDA-----DGLCTRL 167
Query: 308 LYP 310
           + P
Sbjct: 168 IKP 170

>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2 Domain Complexed With Phosphotyrosyl Heptapeptide Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2) Length = 98

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        F
Sbjct: 6   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 65
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
               KF S+ EL++Y++  S+S+
Sbjct: 66  LWVVKFNSLNELVDYHRSTSVSR 88

>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes Reveal A Conformational Switch And Their Functional Implications. Length = 101

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        F
Sbjct: 9   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 68
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
               KF S+ EL++Y++  S+S+
Sbjct: 69  LWVVKFNSLNELVDYHRSTSVSR 91

>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein Sh2 Domain Complexed With The Inhibitor Length = 104

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        F
Sbjct: 5   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
               KF S+ EL++Y++  S+S+
Sbjct: 65  LWVVKFNSLNELVDYHRSTSVSR 87

>pdb|2EKX|A Chain A, Solution Structure Of The Human Bmx Sh2 Domain Length = 110

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 18/118 (15%)
Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNK 262
           SSG  ++ L D +W+ G+ISR      L     +G F+VR+ S++ G YT++L     N 
Sbjct: 2   SSG--SSGLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRN-SSQVGMYTVSLFSKAVND 58
Query: 263 ---LIKIFH-----RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
               +K +H      N  Y  +E + F S+ +LI+Y++H S     + + TRL +PVS
Sbjct: 59  KKGTVKHYHVHTNAENKLY-LAENYCFDSIPKLIHYHQHNS-----AGMITRLRHPVS 110

>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain (Human) Complexed With A Phosphotyrosyl Derivative Length = 96

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        F
Sbjct: 4   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 63
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
               KF S+ EL++Y++  S+S+
Sbjct: 64  LWVVKFNSLNELVDYHRSTSVSR 86

>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A Pyxn- Derived Tripeptide Length = 117

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        F
Sbjct: 8   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 67
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
               KF S+ EL++Y++  S+S+
Sbjct: 68  LWVVKFNSLNELVDYHRSTSVSR 90

>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic Length = 117

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        F
Sbjct: 8   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 67
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
               KF S+ EL++Y++  S+S+
Sbjct: 68  LWVVKFNSLNELVDYHRSTSVSR 90

>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The Grb2 Sh2 Domain Length = 116

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        F
Sbjct: 8   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 67
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
               KF S+ EL++Y++  S+S+
Sbjct: 68  LWVVKFNSLNELVDYHRSTSVSR 90

>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain Complexed With A Phosphotyrosyl Pentapeptide Length = 98

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        F
Sbjct: 5   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
               KF S+ EL++Y++  S+S+
Sbjct: 65  LWVVKFNSLNELVDYHRSTSVSR 87

>pdb|3T04|A Chain A, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX Length = 123

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH- 268
           NSL    WY G +SR+     L+   +G+FLVR++ +  G+ +++LR  G     +++H 
Sbjct: 11  NSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG-----RVYHY 65
Query: 269 -----RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
                 +G+   S   +F ++ EL++++     S     L T L YP  +
Sbjct: 66  RINTASDGKLYVSSESRFNTLAELVHHH-----STVADGLITTLHYPAPK 110

>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974) Length = 123

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 203 MSSGPETNSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTN 261
           M S      ++   W++G I R    + L+    DG FL+R++ +  G+++L+++ G   
Sbjct: 1   MGSPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDV 60
Query: 262 KLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQ 298
           +  K+        F    KF S+ EL++Y++  S+S+
Sbjct: 61  QHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSR 97

>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal Structure Of The Grb2-Sh2 Ac-Pyvnv Complex Length = 114

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        F
Sbjct: 13  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 72
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
               KF S+ EL++Y++  S+S+
Sbjct: 73  LWVVKFNSLNELVDYHRSTSVSR 95

>pdb|2OQ1|A Chain A, Tandem Sh2 Domains Of Zap-70 With 19-Mer Zeta1 Peptide Length = 254

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 80/211 (37%), Gaps = 42/211 (19%)
Query: 113 RHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTF---VLP 169
           R +G  + +LV D   HHF   R L    A      +       P  L + ++     LP
Sbjct: 39  RSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHC-----GPAELCEFYSRDPDGLP 93
Query: 170 TFSSPPALPPRKLSPRPSA----------TYVHS----RQSSLDVAKMSSGPETNSL--- 212
                P   P  L P+P             YV         +L+ A +S  P+   L   
Sbjct: 94  CNLRKPCNRPSGLEPQPGVFDCLRDAXVRDYVRQTWKLEGEALEQAIISQAPQVEKLIAT 153
Query: 213 ---RDAEWYWGDISRDDVNDKLADTA--DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
                  WY   ++R++   KL   A  DG FL+R    + G Y L+L  G T     ++
Sbjct: 154 TAHERXPWYHSSLTREEAERKLYSGAQTDGKFLLR-PRKEQGTYALSLIYGKT-----VY 207
Query: 268 H------RNGRYGFSEPFKFTSVVELINYYK 292
           H      + G+Y   E  KF ++ +L+ Y K
Sbjct: 208 HYLISQDKAGKYCIPEGTKFDTLWQLVEYLK 238

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 41/242 (16%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
           ++S++  EWY+G I+R +    L  A+   GTFLVR++ T  G Y L++      K + +
Sbjct: 142 SDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNV 201
Query: 267 FH------RNGRYGFSEPFKFTSVVELINYY-KH-ESLSQYNSTL------DTRLL---- 308
            H       +G +  +   +F S+ +L+ YY KH + L    +T+       T+ L    
Sbjct: 202 KHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDA 261
Query: 309 YPVSRFSSDVDADIHSNDVD---------------KNPAPGVLRTFSEPFKFTSVVELIN 353
           + + R S  ++  +                     K   PG +     P  F    +++ 
Sbjct: 262 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM----SPEAFLQEAQVMK 317
Query: 354 YYKHESLSQYNSTLDTRLLYPVSRFSSDVD-ADIHSNDVDKYINLKIAFTNLSGAVASTV 412
             +HE L Q  + +    +Y V+ + S     D    +  KY+ L     +++  +AS +
Sbjct: 318 KLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLP-QLVDMAAQIASGM 376
Query: 413 DF 414
            +
Sbjct: 377 AY 378

>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus Musculus At 1.98 A Resolution Length = 164

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLR-----KGGTNK 262
           +S++  EWY+G + R D   +L    +  GTFL+R++ T  G Y+L++R     KG   K
Sbjct: 62  DSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDXKGDHVK 121
Query: 263 LIKIFH-RNGRYGFSEPFKFTSVVELINYYKHES 295
             KI    NG Y  +   +F ++ +L+ +Y  ++
Sbjct: 122 HYKIRKLDNGGYYITTRAQFETLQQLVQHYSEKA 155

>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With Cyclo-[n-Alpha-Acetyl-L-Thi Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl] (Pkf273-791) Length = 117

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        F
Sbjct: 14  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 73
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
               KF S+ EL++Y++  S+S+
Sbjct: 74  LWVVKFNSLNELVDYHRSTSVSR 96

>pdb|1Z3K|A Chain A, Structural Insight Into The Binding Diversity Between The Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2 Domain Length = 98

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 216 EWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYG 274
           EWY+G+++R      L +   +G FL+RD+ +   +++++L+  G NK  K+   +  Y 
Sbjct: 2   EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYC 61
Query: 275 FSEPFKFTSVVELINYYK 292
             +  +F ++ EL+ +YK
Sbjct: 62  IGQR-RFHTMDELVEHYK 78

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 102/238 (42%), Gaps = 33/238 (13%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
           ++S++  EWY+G I+R +    L  A+   GTFLVR++ T  G Y L++      K + +
Sbjct: 59  SDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNV 118
Query: 267 FH------RNGRYGFSEPFKFTSVVELINYY-KH-ESLSQYNSTL------DTRLL---- 308
            H       +G +  +   +F S+ +L+ YY KH + L    +T+       T+ L    
Sbjct: 119 KHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDA 178
Query: 309 YPVSRFSSDVDADIHS---NDVDKNPAPGVLRTFSEPFK--------FTSVVELINYYKH 357
           + + R S  ++  +      +V      G  R   +  K        F    +++   +H
Sbjct: 179 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRH 238
Query: 358 ESLSQYNSTLDTRLLYPVSRFSSDVD-ADIHSNDVDKYINLKIAFTNLSGAVASTVDF 414
           E L Q  + +    +Y V+ + S     D    +  KY+ L     +++  +AS + +
Sbjct: 239 EKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLP-QLVDMAAQIASGMAY 295

>pdb|1M61|A Chain A, Crystal Structure Of The Apo Sh2 Domains Of Zap-70 Length = 259

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 80/211 (37%), Gaps = 42/211 (19%)
Query: 113 RHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTF---VLP 169
           R +G  + +LV D   HHF   R L    A      +       P  L + ++     LP
Sbjct: 44  RSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCG-----PAELCEFYSRDPDGLP 98
Query: 170 TFSSPPALPPRKLSPRPSA----------TYVHS----RQSSLDVAKMSSGPETNSL--- 212
                P   P  L P+P             YV         +L+ A +S  P+   L   
Sbjct: 99  CNLRKPCNRPSGLEPQPGVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIAT 158
Query: 213 ---RDAEWYWGDISRDDVNDKLADTA--DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
                  WY   ++R++   KL   A  DG FL+R    + G Y L+L  G T     ++
Sbjct: 159 TAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLR-PRKEQGTYALSLIYGKT-----VY 212
Query: 268 H------RNGRYGFSEPFKFTSVVELINYYK 292
           H      + G+Y   E  KF ++ +L+ Y K
Sbjct: 213 HYLISQDKAGKYCIPEGTKFDTLWQLVEYLK 243

>pdb|3HCK|A Chain A, Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domain, 20 Structures Length = 107

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 212 LRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTL-----RKGGTNKLI 264
           +   EW++  ISR D   +L    +  G+F++RD+ T  G Y+L++     R+G T K  
Sbjct: 1   METEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHY 60
Query: 265 KIFH-RNGRYGFSEPFKFTSVVELINYYK 292
           KI    NG +  S    F+++ EL+++YK
Sbjct: 61  KIRTLDNGGFYISPRSTFSTLQELVDHYK 89

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 102/238 (42%), Gaps = 33/238 (13%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
           ++S++  EWY+G I+R +    L  A+   GTFLVR++ T  G Y L++      K + +
Sbjct: 59  SDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNV 118
Query: 267 FH------RNGRYGFSEPFKFTSVVELINYY-KH-ESLSQYNSTL------DTRLL---- 308
            H       +G +  +   +F S+ +L+ YY KH + L    +T+       T+ L    
Sbjct: 119 KHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDA 178
Query: 309 YPVSRFSSDVDADIHS---NDVDKNPAPGVLRTFSEPFK--------FTSVVELINYYKH 357
           + + R S  ++  +      +V      G  R   +  K        F    +++   +H
Sbjct: 179 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRH 238
Query: 358 ESLSQYNSTLDTRLLYPVSRFSSDVD-ADIHSNDVDKYINLKIAFTNLSGAVASTVDF 414
           E L Q  + +    +Y V+ + S     D    +  KY+ L     +++  +AS + +
Sbjct: 239 EKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLP-QLVDMAAQIASGMAY 295

>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl- Terminal Src Kinase), C122s Mutant Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
           W+ G I+R+     L     G FLVR+++   G+YTL +   G  +  +I +   +    
Sbjct: 10  WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSID 69
Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
           E   F ++++L+ +Y  ++       L TRL+ P
Sbjct: 70  EEVYFENLMQLVEHYTSDA-----DGLCTRLIKP 98

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 80/211 (37%), Gaps = 42/211 (19%)
Query: 113 RHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTF---VLP 169
           R +G  + +LV D   HHF   R L    A      +       P  L + ++     LP
Sbjct: 41  RSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCG-----PAELCEFYSRDPDGLP 95
Query: 170 TFSSPPALPPRKLSPRPSA----------TYVHS----RQSSLDVAKMSSGPETNSL--- 212
                P   P  L P+P             YV         +L+ A +S  P+   L   
Sbjct: 96  CNLRKPCNRPSGLEPQPGVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIAT 155
Query: 213 ---RDAEWYWGDISRDDVNDKLADTA--DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
                  WY   ++R++   KL   A  DG FL+R    + G Y L+L  G T     ++
Sbjct: 156 TAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLR-PRKEQGTYALSLIYGKT-----VY 209
Query: 268 H------RNGRYGFSEPFKFTSVVELINYYK 292
           H      + G+Y   E  KF ++ +L+ Y K
Sbjct: 210 HYLISQDKAGKYCIPEGTKFDTLWQLVEYLK 240

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 33/238 (13%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
           ++S++  EWY+G I+R +    L  A+   GTFLVR++ T  G Y L++      K + +
Sbjct: 59  SDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNV 118
Query: 267 FH------RNGRYGFSEPFKFTSVVELINYY-KH-ESLSQYNSTL------DTRLL---- 308
            H       +G +  +   +F S+ +L+ YY KH + L    +T+       T+ L    
Sbjct: 119 KHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDA 178
Query: 309 YPVSRFSSDVDADIHS---NDVDKNPAPGVLRTFSEPFK--------FTSVVELINYYKH 357
           + + R S  ++  +      +V      G  R   +  K        F    +++   +H
Sbjct: 179 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRH 238
Query: 358 ESLSQYNSTLDTRLLYPVSRFSSDVD-ADIHSNDVDKYINLKIAFTNLSGAVASTVDF 414
           E L Q  + +    +Y V  + S     D    +  KY+ L     +++  +AS + +
Sbjct: 239 EKLVQLYAVVSEEPIYIVGEYMSKGSLLDFLKGETGKYLRLP-QLVDMAAQIASGMAY 295

>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics Length = 229

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 50  GNASQVAELFHAYSGEIKSYNFSKLEPALLAI-----MLKTYLKSLTEPLIPYVYYEKFV 104
           G AS +  L H +  E    + +K EP +  I     + K Y + L  PL+ Y  YEKF 
Sbjct: 62  GVASNIQRLRHEFDSE-HVPDLTK-EPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFS 119
Query: 105 SLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLA 142
             +S + D     ++  ++Q  P  H+  L +LM HL+
Sbjct: 120 DAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLS 157

>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl- Terminal Src Kinase), Oxidized Form Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
           W+ G I+R+     L     G FLVR+++   G+YTL +   G  +  +I +   +    
Sbjct: 10  WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCDGKVEHYRIMYHASKLSID 69
Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
           E   F ++++L+ +Y  ++       L TRL+ P
Sbjct: 70  EEVYFENLMQLVEHYTSDA-----DGLCTRLIKP 98

>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A Megakaryocyte-Associated Tyrosine Kinase (Matk) From Homo Sapiens At 1.50 A Resolution Length = 98

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
           W+ G IS  +   +L    DG FLVR+++   G+Y L +  G      ++ HR+G     
Sbjct: 7   WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID 66
Query: 277 EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
           E   F ++ + + +Y     S+    + T+L+ P
Sbjct: 67  EAVFFCNLXDXVEHY-----SKDKGAICTKLVRP 95

>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide From Epec Protein Tir Length = 102

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           WY+G ++R      L +   +G FL+RD+ +   +++++L+  G NK  K+  +   Y  
Sbjct: 7   WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCI 66
Query: 276 SEPFKFTSVVELINYYK 292
            +  KF+++ EL+ +YK
Sbjct: 67  GQR-KFSTMEELVEHYK 82

>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology 2 Domain Of C-Abl Length = 109

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 16/108 (14%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH- 268
           NSL    WY G +SR+     L+   +G+FLVR++ +  G+ +++LR  G     +++H 
Sbjct: 4   NSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG-----RVYHY 58
Query: 269 -----RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
                 +G+   S   +F ++ EL++++     S     L T L YP 
Sbjct: 59  RINTASDGKLYVSSESRFNTLAELVHHH-----STVADGLITTLHYPA 101

>pdb|1MIL|A Chain A, Transforming Protein Length = 104

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Query: 417 GEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETE 471
           GE  +  ++SR +AEALL  + +G FL+R STT  GQY L+ + SG PKH L+ + E
Sbjct: 6   GEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPE 60

>pdb|1A1A|A Chain A, C-Src (Sh2 Domain With C188a Mutation) Complexed With Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine) Length = 107

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 210 NSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
           +S++  EWY+G I+R +    L  A+   GTFLVR++ T  G Y+L++      K + + 
Sbjct: 2   DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYSLSVSDFDNAKGLNVK 61
Query: 268 H------RNGRYGFSEPFKFTSVVELINYY-KH 293
           H       +G +  +   +F S+ +L+ YY KH
Sbjct: 62  HYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKH 94

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 16/111 (14%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
            NSL    WY G +SR+     L+   +G+FLVR++ +  G+ +++LR  G     +++H
Sbjct: 138 VNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG-----RVYH 192
Query: 269 ------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
                  +G+   S   +F ++ EL++++     S     L T L YP  +
Sbjct: 193 YRINTASDGKLYVSSESRFNTLAELVHHH-----STVADGLITTLHYPAPK 238

>pdb|1SHD|A Chain A, Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein Interactions Length = 107

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 210 NSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
           +S++  EWY+G I+R +    L  A+   GTFLVR++ T  G Y L++      K + + 
Sbjct: 2   DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 61
Query: 268 H------RNGRYGFSEPFKFTSVVELINYY-KH 293
           H       +G +  +   +F S+ +L+ YY KH
Sbjct: 62  HYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKH 94

>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase Length = 163

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 16/108 (14%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH- 268
           NSL    WY G +SR+     L+   +G+FLVR++ +  G+ +++LR  G     +++H 
Sbjct: 65  NSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG-----RVYHY 119
Query: 269 -----RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
                 +G+   S   +F ++ EL++++     S     L T L YP 
Sbjct: 120 RINTASDGKLYVSSESRFNTLAELVHHH-----STVADGLITTLHYPA 162

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 16/111 (14%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
            NSL    WY G +SR+     L+   +G+FLVR++ +  G+ +++LR  G     +++H
Sbjct: 99  VNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG-----RVYH 153
Query: 269 ------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
                  +G+   S   +F ++ EL++++     S     L T L YP  +
Sbjct: 154 YRINTASDGKLYVSSESRFNTLAELVHHH-----STVADGLITTLHYPAPK 199

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        F
Sbjct: 60  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 119
Query: 276 SEPFKFTSVVELINYYKHESLSQ 298
               KF S+ EL++Y++  S+S+
Sbjct: 120 LWVVKFNSLNELVDYHRSTSVSR 142

>pdb|3TL0|A Chain A, Structure Of Shp2 N-Sh2 Domain In Complex With Rlnpyaqlwhr Peptide Length = 109

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 231 LADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINY 290
           L    DG+FL R + +  G++TL++R+ G    IKI +    Y      KF ++ EL+ Y
Sbjct: 24  LTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQY 83
Query: 291 Y--KHESLSQYNSTLDTRLLYPVS 312
           Y   H  L + N  +   L YP++
Sbjct: 84  YMEHHGQLKEKNGDV-IELKYPLN 106

>pdb|2EYV|A Chain A, Sh2 Domain Of Ct10-Regulated Kinase Length = 124

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 206 GPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTL 255
           G   +S   + WYWG +SR +    L     G FLVRD+ST  G+Y L++
Sbjct: 1   GAMGDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSV 50

>pdb|2BBU|A Chain A, Solution Structure Of Mouse Socs3 In Complex With A Phosphopeptide From The Gp130 Receptor Length = 164

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG 271
           L+++ +YW  ++  + N  L+    GTFL+RD+S +   +TL+++     K ++I    G
Sbjct: 20  LQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGG 79
Query: 272 RYGF------SEPF-KFTSVVELINYY 291
            +        ++P  +F  V++L+++Y
Sbjct: 80  SFSLQSDPRSTQPVPRFDCVLKLVHHY 106

>pdb|1O41|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78300. Length = 108

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 211 SLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
           S++  EWY+G I+R +    L  A+   GTFLVR++ T  G Y L++      K + + H
Sbjct: 1   SIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKH 60
Query: 269 ------RNGRYGFSEPFKFTSVVELINYY-KH 293
                  +G +  +   +F S+ +L+ YY KH
Sbjct: 61  YKIRKLDSGGFYITSRTQFNSLQQLVAYYSKH 92

>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma Regulatory Region And Mechanism Of Autoinhibition And Activation Based On Key Roles Of Sh2 Domains Length = 246

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIK 265
           P+TN+    EWY   ++R      L     DG FLVR  +  N  Y ++ R  G  K  +
Sbjct: 114 PQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNS-YAISFRAEGKIKHCR 172
Query: 266 IFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
           +  + G+       +F S+V+LI+YY+   L +       +L YP++
Sbjct: 173 V-QQEGQTVMLGNSEFDSLVDLISYYEKHPLYR-----KMKLRYPIN 213

>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1 Length = 246

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIK 265
           P+TN+    EWY   ++R      L     DG FLVR  +  N  Y ++ R  G  K  +
Sbjct: 114 PQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNS-YAISFRAEGKIKHCR 172
Query: 266 IFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
           +  + G+       +F S+V+LI+YY+   L +       +L YP++
Sbjct: 173 V-QQEGQTVMLGNSEFDSLVDLISYYEKHPLYR-----KMKLRYPIN 213

>pdb|4F59|A Chain A, Triple Mutant Src Sh2 Domain Length = 112

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 210 NSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
           +S++  EWY+G I+R +    L  A+   GTFLVR++ T  G Y L++      K + + 
Sbjct: 4   DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGLNVK 63
Query: 268 H------RNGRYGFSEPFKFTSVVELINYY-KH 293
           H       +G +  +   +F S+ +L+ YY KH
Sbjct: 64  HYLIRKLDSGGFYITSRTQFNSLQQLVAYYSKH 96

>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed With A Tyrosine-Phosphorylated Peptide From The T-Cell Receptor, Minimized Average Structure Length = 107

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 417 GEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETE 471
           GE  +  ++SR +AEALL  + +G FL+R STT  GQY L+   SG PKH L+ + E
Sbjct: 6   GEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGSQSGQPKHLLLVDPE 60

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
           ++S++  EWY+G I+R +    L +  +  GTFLVR++ T  G Y L++      K + +
Sbjct: 60  SDSIQAEEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNV 119
Query: 267 FH------RNGRYGFSEPFKFTSVVELINYY-KH 293
            H       +G +  +   +F+S+ +L+ YY KH
Sbjct: 120 KHYKIRKLDSGGFYITSRTQFSSLQQLVAYYSKH 153

>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 226

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIK 265
           P+TN+    EWY   ++R      L     DG FLVR  +  N  Y ++ R  G  K  +
Sbjct: 114 PQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNS-YAISFRAEGKIKHCR 172
Query: 266 IFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
           +  + G+       +F S+V+LI+YY+   L +       +L YP++
Sbjct: 173 V-QQEGQTVMLGNSEFDSLVDLISYYEKHPLYR-----KMKLRYPIN 213

>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX Length = 112

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 16/109 (14%)
Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-- 268
           SL    WY G +SR+     L+   +G+FLVR++ +  G+ +++LR  G     +++H  
Sbjct: 1   SLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG-----RVYHYR 55
Query: 269 ----RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
                +G+   S   +F ++ EL++++     S     L T L YP  +
Sbjct: 56  INTASDGKLYVSSESRFNTLAELVHHH-----STVADGLITTLHYPAPK 99

>pdb|1O4C|A Chain A, Crystal Structure Of Sh2 In Complex With Phosphate. Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 211 SLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
           S++  EWY+G I+R +    L  A+   GTFLVR++ T  G Y L++      K + + H
Sbjct: 1   SIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYXLSVSDFDNAKGLNVKH 60
Query: 269 ------RNGRYGFSEPFKFTSVVELINYY-KH 293
                  +G +  +   +F S+ +L+ YY KH
Sbjct: 61  YKIRKLDSGGFYITSRTQFNSLQQLVAYYSKH 92

>pdb|1AYA|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino- Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase Length = 101

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 231 LADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINY 290
           L    DG+FL R + +  G++TL++R+ G    IKI +    Y      KF ++ EL+ Y
Sbjct: 19  LTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQY 78
Query: 291 Y--KHESLSQYNSTLDTRLLYPVS 312
           Y   H  L + N  +   L YP++
Sbjct: 79  YMEHHGQLKEKNGDV-IELKYPLN 101

>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein 15 (arhgap15) Length = 214

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 83  LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLA 142
           LK + + L EPL PY ++E+FV  +   ++      + +LVQ  P  +   ++ L  HL 
Sbjct: 96  LKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLT 155
Query: 143 RMCA 146
           ++ A
Sbjct: 156 KIVA 159

>pdb|1KC2|A Chain A, Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c8ala, Aspcd2ala) Mutant Of The Src Sh2 Domain Bound To The Pqpyeeipi Peptide Length = 103

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 216 EWYWGDISRDDVNDKLADTAD--GTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH----- 268
           EWY+G I+R +    L +  +  GTFLVR++ T  G Y L++      K + + H     
Sbjct: 3   EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSAFANAKGLNVAHYKIRK 62
Query: 269 -RNGRYGFSEPFKFTSVVELINYY-KH 293
             +G +  +   +F+S+ +L+ YY KH
Sbjct: 63  LDSGGFYITSRTQFSSLQQLVAYYSKH 89

>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy Length = 109

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTL 255
           WYWG +SR +    L     G FLVRD+ST  G+Y L++
Sbjct: 2   WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSV 40

>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-gap Length = 234

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 78  LLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYL 137
           L A++LKT+L+ L EPL+ +  Y   V  L+    + + + L  ++Q  P  ++  LR+L
Sbjct: 108 LPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATL-QVLQTLPEENYQVLRFL 166
Query: 138 MAHLARMCA 146
            A L ++ A
Sbjct: 167 TAFLVQISA 175

>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii Length = 304

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTL 255
           +S   + WYWG +SR +    L     G FLVRD+ST  G+Y L++
Sbjct: 6   DSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSV 51

>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 78  LLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYL 137
           L A++LKT+L+ L EPL+ +  Y   V  L+    + + + L  ++Q  P  ++  LR+L
Sbjct: 77  LPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATL-QVLQTLPEENYQVLRFL 135
Query: 138 MAHLARMCA 146
            A L ++ A
Sbjct: 136 TAFLVQISA 144

>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl Length = 303

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 203 MSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGG--T 260
           MSS    +S R A WY G +SR +   +L     G FLVRD+ST  G+Y L++ +    +
Sbjct: 1   MSSARFDSSDRSA-WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVS 59
Query: 261 NKLIK-IFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSS 316
           + +I  + +R  + G  E   F  +  L+ +YK   L        T L+ P  R+ S
Sbjct: 60  HYIINSLPNRRFKIGDQE---FDHLPALLEFYKIHYLDT------TTLIEPAPRYPS 107

>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 78  LLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYL 137
           L A++LKT+L+ L EPL+ +  Y   V  L+    + + + L  ++Q  P  ++  LR+L
Sbjct: 116 LPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATL-QVLQTLPEENYQVLRFL 174
Query: 138 MAHLARMCA 146
            A L ++ A
Sbjct: 175 TAFLVQISA 183

>pdb|2LQN|A Chain A, Solution Structure Of Crkl Length = 303

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 203 MSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGG--T 260
           MSS    +S R A WY G +SR +   +L     G FLVRD+ST  G+Y L++ +    +
Sbjct: 1   MSSARFDSSDRSA-WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVS 59
Query: 261 NKLIK-IFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSS 316
           + +I  + +R  + G  E   F  +  L+ +YK   L        T L+ P  R+ S
Sbjct: 60  HYIINSLPNRRFKIGDQE---FDHLPALLEFYKIHYLDT------TTLIEPAPRYPS 107

>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 78  LLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYL 137
           L A++LKT+L+ L EPL+ +  Y   V  L+    + + + L  ++Q  P  ++  LR+L
Sbjct: 81  LPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATL-QVLQTLPEENYQVLRFL 139
Query: 138 MAHLARMCA 146
            A L ++ A
Sbjct: 140 TAFLVQISA 148

>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 78  LLAIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYL 137
           L A++LKT+L+ L EPL+ +  Y   V  L+    + + + L  ++Q  P  ++  LR+L
Sbjct: 80  LPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATL-QVLQTLPEENYQVLRFL 138
Query: 138 MAHLARMCA 146
            A L ++ A
Sbjct: 139 TAFLVQISA 147

>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii Length = 230

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTL 255
           WYWG +SR +    L     G FLVRD+ST  G+Y L++
Sbjct: 15  WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSV 53

>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii Length = 230

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 406 GAVASTVDFESGEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPK 463
           GA+A   D E     +  R+SR +A ALL G+  G FL+R S+T  G Y LS+  +    
Sbjct: 1   GAMAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVS 60
Query: 464 HCLV 467
           H ++
Sbjct: 61  HYII 64

>pdb|2HMH|A Chain A, Crystal Structure Of Socs3 In Complex With Gp130(Ptyr757) Phosphopeptide Length = 152

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG 271
           L+++ +YW  ++  + N  L+    GTFL+RD+S +   +TL+++     K ++I    G
Sbjct: 31  LQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQXEGG 90
Query: 272 RYGF------SEPF-KFTSVVELINYY 291
            +        ++P  +F  V++L+++Y
Sbjct: 91  SFSLQSDPRSTQPVPRFDXVLKLVHHY 117

>pdb|2EO6|A Chain A, Solution Structure Of The Sh2 Domain From Mouse B-Cell Linker Protein Blnk Length = 141

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 20/128 (15%)
Query: 204 SSGPETNSLRDAE-------WYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGE--YTL 253
           SSGP  ++  D E       WY G   R    + L     DG+FL+R +S  + +  YTL
Sbjct: 5   SSGPFNSTFADQEAELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTL 64
Query: 254 T--LRKGGTNKLIKIFHRNGRYGFSEPFK----FTSVVELINYYKHESL----SQYNSTL 303
                K   N  ++      +Y   +       F SVVE++N ++H  L    SQ N+  
Sbjct: 65  VAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQNNTKD 124
Query: 304 DTRLLYPV 311
            TRL Y V
Sbjct: 125 STRLKYAV 132

>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2 Length = 525

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 231 LADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINY 290
           L    DG+FL R + +  G+ TL++R+ G    IKI +    Y      KF ++ EL+ Y
Sbjct: 21  LTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQY 80
Query: 291 Y--KHESLSQYNSTLDTRLLYPVS 312
           Y   H  L + N  +   L YP++
Sbjct: 81  YMEHHGQLKEKNGDV-IELKYPLN 103

>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I Length = 204

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTL 255
           WYWG +SR +    L     G FLVRD+ST  G+Y L++
Sbjct: 13  WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSV 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	523
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	1e-46
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	2e-25
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	2e-12
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	1e-42
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	1e-22
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	2e-22
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	8e-18
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	8e-10
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	6e-40
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	4e-30
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	2e-10
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	1e-39
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	3e-27
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	7e-09
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	5e-38
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	1e-17
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	3e-36
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	4e-32
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	1e-07
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	4e-36
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	2e-30
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	4e-07
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	6e-34
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	5e-17
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	7e-34
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	2e-16
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	4e-32
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	1e-19
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	6e-05
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	2e-31
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	2e-19
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	3e-04
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	2e-31
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	8e-16
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	4e-31
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	1e-18
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	2e-17
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	6e-31
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	8e-15
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	3e-29
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	9e-21
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	8e-06
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	2e-28
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	1e-17
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	8e-05
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	7e-28
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	8e-19
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	1e-04
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	2e-27
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	1e-17
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	4e-05
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	5e-27
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	1e-15
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	1e-26
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	5e-15
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	3e-26
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	8e-18
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	2e-05
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	3e-26
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	2e-21
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	2e-25
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	5e-16
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	2e-25
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	4e-15
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	7e-05
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	3e-25
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	9e-19
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	2e-05
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	3e-25
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	4e-12
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-11
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	6e-25
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	9e-19
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	4e-05
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	3e-24
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	8e-22
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	1e-23
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	2e-18
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	2e-23
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	8e-19
2dly_A	121	FYN-related kinase; BRK family kinase, structural	2e-23
2dly_A	121	FYN-related kinase; BRK family kinase, structural	3e-20
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	4e-23
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	2e-16
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	7e-23
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	2e-18
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	7e-23
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	3e-17
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	9e-23
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	9e-14
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	4e-04
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	2e-22
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	8e-17
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	2e-22
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	1e-13
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	4e-22
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	2e-16
3gqi_B	226	Phospholipase C-gamma-1; phosphorylated kinase, PY	2e-21
3gqi_B	226	Phospholipase C-gamma-1; phosphorylated kinase, PY	3e-17
3gqi_B	226	Phospholipase C-gamma-1; phosphorylated kinase, PY	9e-15
3gqi_B	226	Phospholipase C-gamma-1; phosphorylated kinase, PY	1e-11
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	3e-21
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	3e-20
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	6e-21
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-13
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	2e-20
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	5e-17
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	4e-20
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-11
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	4e-20
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	6e-18
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	1e-19
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	3e-14
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	2e-19
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	6e-13
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	5e-19
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	1e-17
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	7e-19
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	4e-16
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	1e-18
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	1e-16
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	2e-18
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	3e-18
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	2e-18
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	3e-17
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	2e-18
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	5e-17
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	8e-18
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	5e-15
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	8e-18
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	4e-17
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	7e-17
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	1e-10
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	4e-16
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	4e-16
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	5e-16
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	9e-16
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	2e-15
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-15
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-09
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	2e-15
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	2e-15
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	1e-08
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	2e-15
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	3e-15
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	5e-11
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	3e-15
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	1e-12
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	6e-15
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	6e-15
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	2e-14
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	2e-14
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	2e-06
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	2e-14
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-14
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	4e-09
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-14
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	3e-09
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	8e-14
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	1e-13
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	1e-13
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	7e-11
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	4e-13
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	2e-12
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	8e-12
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	7e-09
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	1e-11
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	2e-09
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	5e-11
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	3e-06
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	2e-09
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	9e-07
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	1e-08
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	3e-06
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	2e-08
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	2e-04
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	2e-08
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	3e-07
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	2e-04
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	9e-07
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	1e-06
1uur_A	473	Stata protein, STAT protein; transcription activat	5e-06
1uur_A	473	Stata protein, STAT protein; transcription activat	3e-04
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	2e-04

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A Length = 120

 Score =  157 bits (400), Expect = 1e-46
 Identities = 78/108 (72%), Positives = 96/108 (88%), Gaps = 1/108 (0%)

Query: 208 ETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKI 266
              SL++AEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NKLIKI
Sbjct: 4   NNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKI 63

Query: 267 FHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRF 314
           FHR+G+YGFS+P  F+SVVELIN+Y++ESL+QYN  LD +LLYPVS++
Sbjct: 64  FHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKY 111

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A Length = 120

 Score =  100 bits (251), Expect = 2e-25
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
            +SR +    L    DGTFL+R ++T   G Y L++   G  K   ++  +  +GF++P 
Sbjct: 17  DISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL 76

Query: 481 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
             + S+  L+ HY   SL ++N  L   L YPV
Sbjct: 77  T-FSSVVELINHYRNESLAQYNPKLDVKLLYPV 108

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A Length = 120

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 26/41 (63%), Positives = 35/41 (85%)

Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRF 378
            FS+P  F+SVVELIN+Y++ESL+QYN  LD +LLYPVS++
Sbjct: 71  GFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKY 111

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Length = 373

 Score =  155 bits (392), Expect = 1e-42
 Identities = 79/108 (73%), Positives = 96/108 (88%), Gaps = 1/108 (0%)

Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKN-GEYTLTLRKGGTNKLIKIFHR 269
           SL++AEWYWGDISR++VN+KL DTADGTFLVRD STK  G+YTLTLRKGG NKLIKIFHR
Sbjct: 6   SLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHR 65

Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
           +G+YGFS+P  F+SVVELIN+Y++ESL+QYN  LD +LLYPVS++  D
Sbjct: 66  DGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 113

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Length = 373

 Score = 98.8 bits (245), Expect = 1e-22
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
            +SR +    L    DGTFL+R ++T   G Y L++   G  K   ++  +  +GF++P 
Sbjct: 16  DISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL 75

Query: 481 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
             + S+  L+ HY   SL ++N  L   L YPV
Sbjct: 76  T-FSSVVELINHYRNESLAQYNPKLDVKLLYPV 107

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Length = 373

 Score = 98.0 bits (243), Expect = 2e-22
 Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 2/74 (2%)

Query: 418 EKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFG 475
           EKTW V   +R +AE LL G+ DGTFL+R S+  G YA S+V  G  KHC++ +T  G+G
Sbjct: 300 EKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYG 359

Query: 476 FAEPFNIYPSLGAL 489
           FAEP+N+Y SL  L
Sbjct: 360 FAEPYNLYSSLKEL 373

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Length = 373

 Score = 84.1 bits (207), Expect = 8e-18
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 203 MSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNK 262
           +    +     +  W  G  +R+   + L    DGTFLVR+ S+K G Y  ++   G  K
Sbjct: 289 VEDDEDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRE-SSKQGCYACSVVVDGEVK 347

Query: 263 LIKIFHRNGRYGFSEPFK-FTSVVEL 287
              I      YGF+EP+  ++S+ EL
Sbjct: 348 HCVINKTATGYGFAEPYNLYSSLKEL 373

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Length = 373

 Score = 59.8 bits (144), Expect = 8e-10
 Identities = 27/44 (61%), Positives = 36/44 (81%)

Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 381
            FS+P  F+SVVELIN+Y++ESL+QYN  LD +LLYPVS++  D
Sbjct: 70  GFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQD 113

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score =  139 bits (353), Expect = 6e-40
 Identities = 29/103 (28%), Positives = 52/103 (50%)

Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRN 270
                 W+ G++ R   ++ L   A GT+L+R+   +   + ++++     K IK+  ++
Sbjct: 12  DYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKD 71

Query: 271 GRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
                +E  KF S++EL+ YY+  SL +    LDT L YP S 
Sbjct: 72  NWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSG 114

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score =  113 bits (284), Expect = 4e-30
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 7/119 (5%)

Query: 405 SGAVAST-VDFESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSG 460
           SG+  S  +D+ +    W    M R Q + LL     GT+LIR       ++A+SI  + 
Sbjct: 3   SGSSGSREIDYTA--YPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFND 60

Query: 461 APKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG 519
             KH  V E +      E    + SL  LV +Y  +SL+E    L TTL YP   P+SG
Sbjct: 61  EVKHIKVVEKDNWIHITEAKK-FDSLLELVEYYQCHSLKESFKQLDTTLKYPYSGPSSG 118

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
             +E  KF S++EL+ YY+  SL +    LDT L YP S 
Sbjct: 75  HITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSG 114

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A* Length = 138

 Score =  139 bits (353), Expect = 1e-39
 Identities = 33/104 (31%), Positives = 48/104 (46%)

Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR 269
             L    WY G + R      LA+ +DGTFLVR       E+ ++++     K IKI   
Sbjct: 21  QDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTA 80

Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
            G Y  +E   F  + EL+ +Y+  SL     +LDT L +P   
Sbjct: 81  EGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 124

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A* Length = 138

 Score =  105 bits (265), Expect = 3e-27
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
            M RA AE++L+ R DGTFL+R       ++A+SI  +   KH  +   E  +   E   
Sbjct: 32  PMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEK-K 90

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            +  L  LV  Y  NSL++    L TTL +P 
Sbjct: 91  AFRGLTELVEFYQQNSLKDCFKSLDTTLQFPF 122

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A* Length = 138

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
             +E   F  + EL+ +Y+  SL     +LDT L +P   
Sbjct: 85  RITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 124

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens} Length = 141

 Score =  135 bits (341), Expect = 5e-38
 Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 13/135 (9%)

Query: 195 QSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLT 254
           QSS  +   S   E   L    WYWG I+R +   KLA+  DG+FLVRD+S      +L+
Sbjct: 4   QSSGPMDVTSLTEELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLS 63

Query: 255 LRKGGTNKLIKIFHRNGRYGF---SEPFKFTSVVELINYYKHESLS----------QYNS 301
            R  G     +I H NGR+ F    +    TS+V+LI +   +S +            ++
Sbjct: 64  FRSHGKTLHTRIEHSNGRFSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSA 123

Query: 302 TLDTRLLYPVSRFSS 316
           T   RL  PVSRF  
Sbjct: 124 TYPVRLTNPVSRFMQ 138

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens} Length = 141

 Score = 78.7 bits (194), Expect = 1e-17
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 14/103 (13%)

Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP--F 480
           ++R +AE  L+  PDG+FL+R S+      +LS    G   H  +  +   F F E    
Sbjct: 31  ITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNGRFSFYEQPDV 90

Query: 481 NIYPSLGALVLHYAANSL----------EEHNDDLKTTLAYPV 513
             + S+  L+ H   +S              +      L  PV
Sbjct: 91  EGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSATYPVRLTNPV 133

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A Length = 112

 Score =  129 bits (326), Expect = 3e-36
 Identities = 56/101 (55%), Positives = 70/101 (69%), Gaps = 2/101 (1%)

Query: 418 EKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFG 475
           EKTW V   +R +AE LL G+ DGTFL+R S+  G YA S+V  G  KHC++ +T  G+G
Sbjct: 9   EKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYG 68

Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
           FAEP+N+Y SL  LVLHY   SL +HND L  TLAYPV+A 
Sbjct: 69  FAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYAQ 109

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A Length = 112

 Score =  118 bits (297), Expect = 4e-32
 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 2/109 (1%)

Query: 206 GPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIK 265
           G       +  W  G  +R+   + L    DGTFLVR+ S+K G Y  ++   G  K   
Sbjct: 1   GSPIPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRE-SSKQGCYACSVVVDGEVKHCV 59

Query: 266 IFHRNGRYGFSEPFK-FTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
           I      YGF+EP+  ++S+ EL+ +Y+H SL Q+N +L+  L YPV  
Sbjct: 60  INKTATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 108

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A Length = 112

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
            ++S+ EL+ +Y+H SL Q+N +L+  L YPV  
Sbjct: 75  LYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 108

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} Length = 302

 Score =  135 bits (340), Expect = 4e-36
 Identities = 59/101 (58%), Positives = 73/101 (72%), Gaps = 2/101 (1%)

Query: 418 EKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFG 475
           E+TW V +++R QAE +LSG+ DGTFLIR S+  G YA S+V  G  KHC++Y T  GFG
Sbjct: 193 ERTWYVGKINRTQAEEMLSGKRDGTFLIRESSQRGCYACSVVVDGDTKHCVIYRTATGFG 252

Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
           FAEP+N+Y SL  LVLHY   SL +HND L  TLA+PV AP
Sbjct: 253 FAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRAP 293

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} Length = 302

 Score =  119 bits (299), Expect = 2e-30
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 2/111 (1%)

Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKL 263
                     +  WY G I+R    + L+   DGTFL+R+ S++ G Y  ++   G  K 
Sbjct: 183 EDEDALPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRE-SSQRGCYACSVVVDGDTKH 241

Query: 264 IKIFHRNGRYGFSEPF-KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
             I+     +GF+EP+  + S+ EL+ +Y+H SL Q+N  L   L +PV  
Sbjct: 242 CVIYRTATGFGFAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRA 292

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} Length = 302

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 340 SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
                + S+ EL+ +Y+H SL Q+N  L   L +PV  
Sbjct: 255 EPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRA 292

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 169

 Score =  125 bits (315), Expect = 6e-34
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 14/121 (11%)

Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
                L    WYWG ++ ++  +KL +  +GTFL+RD+S  +   T++++       ++I
Sbjct: 9   KALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRI 68

Query: 267 FHRNGRYGF-------SEPFKFTSVVELINYYKHESLS-------QYNSTLDTRLLYPVS 312
            +++G++         S+  +F SVV LI+YY               N T+   L  P+ 
Sbjct: 69  EYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKPLY 128

Query: 313 R 313
            
Sbjct: 129 T 129

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 169

 Score = 77.6 bits (191), Expect = 5e-17
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 15/105 (14%)

Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
           M+  +A+  L   P+GTFLIR S+       +S+  S  P +  +   +  F       +
Sbjct: 24  MTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIICV 83

Query: 483 ------YPSLGALVLHYAANSLE-------EHNDDLKTTLAYPVF 514
                 + S+  L+ +Y     +         N  +   L  P++
Sbjct: 84  KSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKPLY 128

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 187

 Score =  125 bits (316), Expect = 7e-34
 Identities = 28/145 (19%), Positives = 59/145 (40%), Gaps = 14/145 (9%)

Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
           P+   + +   YWG + +      L    +GTFL+RD++ ++  ++++ R+   +   +I
Sbjct: 26  PDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARI 85

Query: 267 FHRNGRYGF----SEPFKFTSVVELINYYKHESLSQYNSTLDTRLL---YPVS-----RF 314
              N  + F       F    +  L+ +YK  S   +   L +  L   +P S     R 
Sbjct: 86  EQWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLIRTFPFSLQHICRT 145

Query: 315 SSDVDADIHSNDVDKNPAPGVLRTF 339
              +      + +D  P P  ++ +
Sbjct: 146 V--ICNCTTYDGIDALPIPSSMKLY 168

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 187

 Score = 76.8 bits (189), Expect = 2e-16
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAE--- 478
            M +  AEALL G+P+GTFL+R S      +++S        H  + +    F F     
Sbjct: 40  VMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDP 99

Query: 479 PFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
                P +  L+ HY   S        +  L+ P+
Sbjct: 100 CVFHSPDITGLLEHYKDPSACMFF---EPLLSTPL 131

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} PDB: 1jwo_A Length = 98

 Score =  117 bits (296), Expect = 4e-32
 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG 271
           L    W+ G IS  +   +L    DG FLVR+++   G+Y L +  G      ++ HR+G
Sbjct: 2   LSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDG 61

Query: 272 RYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
                E   F ++++++ +Y  +  +     + T+L+ P  +
Sbjct: 62  HLTIDEAVFFCNLMDMVEHYSKDKGA-----ICTKLVRPKRK 98

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} PDB: 1jwo_A Length = 98

 Score = 82.6 bits (205), Expect = 1e-19
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
           ++S  +A   L    DG FL+R S    G Y L +       H  V   +      E   
Sbjct: 11  KISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEA-V 69

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + +L  +V HY      +    + T L  P 
Sbjct: 70  FFCNLMDMVEHY-----SKDKGAICTKLVRPK 96

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} PDB: 1jwo_A Length = 98

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 7/40 (17%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
           T  E   F ++++++ +Y  +  +     + T+L+ P  +
Sbjct: 64  TIDEAVFFCNLMDMVEHYSKDKGA-----ICTKLVRPKRK 98

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A Length = 106

 Score =  116 bits (293), Expect = 2e-31
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
              L    W+ G I+R+     L     G FLVR+++   G+YTL +   G  +  +I +
Sbjct: 2   GTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMY 61

Query: 269 RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
              +    E   F ++++L+ +Y  ++       L TRL+ P   
Sbjct: 62  HASKLSIDEEVYFENLMQLVEHYTSDADG-----LCTRLIKPKVM 101

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A Length = 106

 Score = 82.3 bits (204), Expect = 2e-19
 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
           +++R QAE LL     G FL+R ST   G Y L +   G  +H  +          E   
Sbjct: 14  KITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSIDEE-V 72

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + +L  LV HY         D L T L  P 
Sbjct: 73  YFENLMQLVEHY-----TSDADGLCTRLIKPK 99

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A Length = 106

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
           +  E   F ++++L+ +Y  ++       L TRL+ P   
Sbjct: 67  SIDEEVYFENLMQLVEHYTSDADG-----LCTRLIKPKVM 101

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus} Length = 152

 Score =  117 bits (294), Expect = 2e-31
 Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 7/140 (5%)

Query: 183 SPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVR 242
           S  P  T +  +  S              L+++ +YW  ++  + N  L+    GTFL+R
Sbjct: 2   SEFPLDTSLRLKTFSSKSEYQLVVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIR 61

Query: 243 DTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF-------SEPFKFTSVVELINYYKHES 295
           D+S +   +TL+++     K ++I    G +             +F  V++L+++Y    
Sbjct: 62  DSSDQRHFFTLSVKTQSGTKNLRIQXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYMPPQ 121

Query: 296 LSQYNSTLDTRLLYPVSRFS 315
               ++      +Y      
Sbjct: 122 ALPGSTPKRAYYIYSGGEKI 141

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus} Length = 152

 Score = 73.9 bits (181), Expect = 8e-16
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 8/101 (7%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF----- 476
            ++  +A  LLS  P GTFLIR S+     + LS+      K+  +      F       
Sbjct: 40  AVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQXEGGSFSLQSDPR 99

Query: 477 -AEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
             +P   +  +  LV HY        +   +    Y     
Sbjct: 100 STQPVPRFDXVLKLVHHYMPPQALPGSTPKRAYYIYSGGEK 140

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A* Length = 254

 Score =  120 bits (302), Expect = 4e-31
 Identities = 47/308 (15%), Positives = 87/308 (28%), Gaps = 62/308 (20%)

Query: 211 SLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF- 267
           S     +++G+I+R++  D L     +DG +L+R +    G + L++  G       I  
Sbjct: 1   SANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIER 60

Query: 268 HRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDV 327
             NG Y  +      S  +L +Y+  ES       L   L  P                 
Sbjct: 61  ELNGTYAIAGGRTHASPADLCHYHSQESDG-----LVCLLKKPF---------------- 99

Query: 328 DKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIH 387
                        +   F  + E +     +           + +         + A   
Sbjct: 100 -----NRPQGVQPKTGPFEDLKENLIREYVKQTWNLQGQALEQAIISQKPQLEKLIATTA 154

Query: 388 SNDVDKYINLKIAFTNLSGAVASTVDFESGEK--TWLVRMSRAQAEALLSGRPDGTFLIR 445
              +  +         +S   +  +     +    +L+R                     
Sbjct: 155 HEKMPWF------HGKISREESEQIVLIGSKTNGKFLIRAR------------------- 189

Query: 446 PSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDL 505
               G YAL ++  G   H  + + + G         + +L  LV HY         D L
Sbjct: 190 -DNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHY-----SYKADGL 243

Query: 506 KTTLAYPV 513
              L  P 
Sbjct: 244 LRVLTVPC 251

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A* Length = 254

 Score = 84.6 bits (209), Expect = 1e-18
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 9/129 (6%)

Query: 188 ATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTS 245
                 +       ++     T +     W+ G ISR++    +      +G FL+R   
Sbjct: 131 QGQALEQAIISQKPQLEKLIATTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRA-R 189

Query: 246 TKNGEYTLTLRKGGTNKLIKIF-HRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLD 304
             NG Y L L   G     +I   + G+    E  KF ++ +L+ +Y +++       L 
Sbjct: 190 DNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHYSYKADG-----LL 244

Query: 305 TRLLYPVSR 313
             L  P  +
Sbjct: 245 RVLTVPCQK 253

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A* Length = 254

 Score = 80.7 bits (199), Expect = 2e-17
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 479
            ++R +AE  L   G  DG +L+R S    G +ALS+       H  +     G      
Sbjct: 11  NITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAG 70

Query: 480 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
              + S   L  +++  S     D L   L  P   P
Sbjct: 71  GRTHASPADLCHYHSQES-----DGLVCLLKKPFNRP 102

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus} Length = 164

 Score =  117 bits (293), Expect = 6e-31
 Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 10/116 (8%)

Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
                L+++ +YW  ++  + N  L+    GTFL+RD+S +   +TL+++     K ++I
Sbjct: 15  NAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRI 74

Query: 267 FHRNGRYGF-------SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFS 315
               G +             +F  V++L+++Y     +    +       P S   
Sbjct: 75  QCEGGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPGTP---SFSLPPTEPSSEVP 127

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus} Length = 164

 Score = 71.2 bits (174), Expect = 8e-15
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF------ 476
           ++  +A  LLS  P GTFLIR S+     + LS+      K+  +      F        
Sbjct: 30  VTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGGSFSLQSDPRS 89

Query: 477 AEPFNIYPSLGALVLHYAANSL 498
            +P   +  +  LV HY     
Sbjct: 90  TQPVPRFDCVLKLVHHYMPPPG 111

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus} Length = 124

 Score =  110 bits (277), Expect = 3e-29
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIK 265
           P  N      WY+  +SR +  D L     DG FL+R        Y +T R  G  K  +
Sbjct: 11  PNPNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRK-REGTDSYAITFRARGKVKHCR 69

Query: 266 IFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
           I      +       F S+VEL++YY+  +L         RL YPV+ 
Sbjct: 70  INRDGRHFVLGTSAYFESLVELVSYYEKHALY-----RKMRLRYPVTP 112

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus} Length = 124

 Score = 86.9 bits (216), Expect = 9e-21
 Identities = 39/109 (35%), Positives = 49/109 (44%), Gaps = 11/109 (10%)

Query: 408 VASTVDFESGEKTWLV-RMSRAQAEALLSGRP-DGTFLIRPS-TTGQYALSIVCSGAPKH 464
           V +    ES  K W   R+SR +AE +L   P DG FLIR    T  YA++    G  KH
Sbjct: 10  VPNPNPHES--KPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGTDSYAITFRARGKVKH 67

Query: 465 CLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
           C +    R F        + SL  LV +Y     E+H    K  L YPV
Sbjct: 68  CRINRDGRHFVLGTSAY-FESLVELVSYY-----EKHALYRKMRLRYPV 110

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus} Length = 124

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
                  F S+VEL++YY+  +L         RL YPV+ 
Sbjct: 78  VLGTSAYFESLVELVSYYEKHALY-----RKMRLRYPVTP 112

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A* Length = 104

 Score =  108 bits (271), Expect = 2e-28
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR 269
           + LR   W+ G +SR +    L    +G FLVR+++T  G+Y LT  + G  K + +   
Sbjct: 2   SQLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDP 59

Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
            G     +  +F SV  LI+Y+    L   ++  +  L  PV R
Sbjct: 60  EGVVRTKDH-RFESVSHLISYHMDNHLPIISAGSELCLQQPVER 102

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A* Length = 104

 Score = 77.7 bits (192), Expect = 1e-17
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 6/92 (6%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
           ++SR +AEALL  + +G FL+R STT  GQY L+ + SG PKH L+ + E      +   
Sbjct: 13  KLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHR- 69

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + S+  L+ ++  N L   +   +  L  PV
Sbjct: 70  -FESVSHLISYHMDNHLPIISAGSELCLQQPV 100

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A* Length = 104

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 344 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
           +F SV  LI+Y+    L   ++  +  L  PV R
Sbjct: 69  RFESVSHLISYHMDNHLPIISAGSELCLQQPVER 102

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A Length = 109

 Score =  106 bits (267), Expect = 7e-28
 Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 2/106 (1%)

Query: 210 NSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
           + +    W+  +I+  +  + L     DG+FL R + +  G++TL++R+ G    IKI +
Sbjct: 2   SHMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQN 61

Query: 269 RNGRYGFSEPFKFTSVVELINYYKHESLS-QYNSTLDTRLLYPVSR 313
               Y      KF ++ EL+ YY       +  +     L YP++ 
Sbjct: 62  TGDYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNC 107

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A Length = 109

 Score = 80.8 bits (200), Expect = 8e-19
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 424 RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
            ++  +AE LL  R  DG+FL RPS +  G + LS+  +GA  H  +  T   +      
Sbjct: 13  NITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGG- 71

Query: 481 NIYPSLGALVLHYAANSLEEHNDD-LKTTLAYPV 513
             + +L  LV +Y  +  +    +     L YP+
Sbjct: 72  EKFATLAELVQYYMEHHGQLKEKNGDVIELKYPL 105

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A Length = 109

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 338 TFSEPFKFTSVVELINYYKHESLS-QYNSTLDTRLLYPVSR 377
                 KF ++ EL+ YY       +  +     L YP++ 
Sbjct: 67  DLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNC 107

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 100

 Score =  104 bits (263), Expect = 2e-27
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 8/101 (7%)

Query: 216 EWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NGR 272
            W++G ISR +   +L     A G FL+R +   + +Y L++R     +  KI+ R  GR
Sbjct: 3   PWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGR 62

Query: 273 YGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
              +E   F S+ EL+NY++ +SLS        RL  P  +
Sbjct: 63  LHLNEAVSFLSLPELVNYHRAQSLS-----HGLRLAAPCRK 98

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 100

 Score = 77.2 bits (191), Expect = 1e-17
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 424 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 479
            +SR++A   L   G   G FLIR S      Y LS+  + A +H  ++    G      
Sbjct: 8   CISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNE 67

Query: 480 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
              + SL  LV ++        +      LA P 
Sbjct: 68  AVSFLSLPELVNYH-----RAQSLSHGLRLAAPC 96

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 100

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
             +E   F S+ EL+NY++ +SLS        RL  P  +
Sbjct: 64  HLNEAVSFLSLPELVNYHRAQSLS-----HGLRLAAPCRK 98

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A Length = 254

 Score =  108 bits (272), Expect = 5e-27
 Identities = 49/309 (15%), Positives = 85/309 (27%), Gaps = 62/309 (20%)

Query: 210 NSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
           +      +++G ISR +  + L  A  ADG FL+R      G Y L+L          I 
Sbjct: 1   DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIE 60

Query: 268 -HRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSND 326
              NG Y  +         EL  +Y  +        L   L  P +R S         + 
Sbjct: 61  RQLNGTYAIAGGKAHCGPAELCEFYSRDP-----DGLPCNLRKPCNRPSGLEPQPGVFDC 115

Query: 327 VDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADI 386
           +        +R   +         +I+           +  +    Y             
Sbjct: 116 LRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHERMPWY------------- 162

Query: 387 HSNDVDKYINLKIAFTNLSGAVASTVDFESGEK--TWLVRMSRAQAEALLSGRPDGTFLI 444
                          ++L+   A    +   +    +L+R                    
Sbjct: 163 --------------HSSLTREEAERKLYSGAQTDGKFLLRPR------------------ 190

Query: 445 RPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDD 504
                G YALS++      H L+ + + G         + +L  LV +      +   D 
Sbjct: 191 --KEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYL-----KLKADG 243

Query: 505 LKTTLAYPV 513
           L   L    
Sbjct: 244 LIYCLKEAC 252

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A Length = 254

 Score = 76.1 bits (187), Expect = 1e-15
 Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 479
            +SRA+AE  L  +G  DG FL+R      G Y LS+V      H  +     G      
Sbjct: 12  SISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAG 71

Query: 480 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
              +     L   Y+ +      D L   L  P   P
Sbjct: 72  GKAHCGPAELCEFYSRDP-----DGLPCNLRKPCNRP 103

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus} Length = 141

 Score =  104 bits (261), Expect = 1e-26
 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 13/119 (10%)

Query: 207 PETNSLRDAEWYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTL----RKGGTN 261
            +   L    WY G   R    + L     DG+FL+R +S  + +   TL     K   N
Sbjct: 15  DQEAELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYN 74

Query: 262 KLIKIFHRNGRYGFSEP----FKFTSVVELINYYKHESL----SQYNSTLDTRLLYPVS 312
             ++      +Y   +       F SVVE++N ++H  L    SQ N+   TRL Y V 
Sbjct: 75  IPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQNNTKDSTRLKYAVK 133

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus} Length = 141

 Score = 71.4 bits (175), Expect = 5e-15
 Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 17/113 (15%)

Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT----GQYALSIVCSGAPKHCLVYETERGFGFA- 477
              R  AE  L     DG+FLIR S+       Y L    +    +  V   E    +A 
Sbjct: 29  ACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEATKQYAL 88

Query: 478 ----EPFNIYPSLGALVLHYAANSL----EEHNDDLKTTLAYPV---FAPASG 519
                    + S+  +V  +  N L     ++N    T L Y V     P+SG
Sbjct: 89  GKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQNNTKDSTRLKYAVKVSSGPSSG 141

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 110

 Score =  101 bits (255), Expect = 3e-26
 Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 14/112 (12%)

Query: 209 TNSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLR------KGGTN 261
           ++ L D +W+ G+ISR      L     +G F+VR+ S++ G YT++L       K GT 
Sbjct: 5   SSGLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRN-SSQVGMYTVSLFSKAVNDKKGTV 63

Query: 262 KLIKI-FHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
           K   +  +   +   +E + F S+ +LI+Y++H S       + TRL +PVS
Sbjct: 64  KHYHVHTNAENKLYLAENYCFDSIPKLIHYHQHNSAG-----MITRLRHPVS 110

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 110

 Score = 78.1 bits (193), Expect = 8e-18
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 13/98 (13%)

Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIVCS------GAPKHCLVYETERGFG 475
            +SR+Q+E LL     +G F++R S+  G Y +S+         G  KH  V+       
Sbjct: 17  NISRSQSEQLLRQKGKEGAFMVRNSSQVGMYTVSLFSKAVNDKKGTVKHYHVHTNAENKL 76

Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
           +      + S+  L+ ++     + ++  + T L +PV
Sbjct: 77  YLAENYCFDSIPKLIHYH-----QHNSAGMITRLRHPV 109

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 110

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 376
             +E + F S+ +LI+Y++H S       + TRL +PVS
Sbjct: 77  YLAENYCFDSIPKLIHYHQHNSAG-----MITRLRHPVS 110

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A* Length = 100

 Score =  101 bits (254), Expect = 3e-26
 Identities = 20/93 (21%), Positives = 43/93 (46%)

Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRN 270
            +   EW+   +SR    + L     G F++R + +  G++++++R     +  K+    
Sbjct: 5   DIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDT 64

Query: 271 GRYGFSEPFKFTSVVELINYYKHESLSQYNSTL 303
               F    KF S+ +L++YY+  S+S+     
Sbjct: 65  KGNYFLWTEKFPSLNKLVDYYRTTSISKQKQVF 97

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A* Length = 100

 Score = 87.6 bits (218), Expect = 2e-21
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
            +SR QAE LL G+  G F+IR S +  G +++S+      +H  V    +G  F     
Sbjct: 15  GLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWT-E 73

Query: 482 IYPSLGALVLHYAANSLEEHNDDL 505
            +PSL  LV +Y   S+ +     
Sbjct: 74  KFPSLNKLVDYYRTTSISKQKQVF 97

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens} Length = 116

 Score =  100 bits (250), Expect = 2e-25
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKL 263
                   L + +WY G I R +  + L     G FLVR++  K GEY L++   G  + 
Sbjct: 6   HHHSHMKPLAEQDWYHGAIPRIEAQELL--KKQGDFLVRESHGKPGEYVLSVYSDGQRRH 63

Query: 264 IKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
             I + +  Y F     F+++ +LI+++               LL P+ +
Sbjct: 64  FIIQYVDNMYRFEGT-GFSNIPQLIDHHYTTKQV-ITKKSGVVLLNPIPK 111

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens} Length = 116

 Score = 73.1 bits (180), Expect = 5e-16
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
            + R +A+ LL  +  G FL+R S    G+Y LS+   G  +H ++   +  + F     
Sbjct: 23  AIPRIEAQELL--KKQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRFEGTG- 79

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + ++  L+ H+               L  P+
Sbjct: 80  -FSNIPQLIDHHYTTKQVITKKS-GVVLLNPI 109

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F* Length = 106

 Score = 99.6 bits (249), Expect = 2e-25
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 13/111 (11%)

Query: 211 SLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
           S++  EWY+G + R D   +L       GTFL+R++ T  G Y+L++R     K   + H
Sbjct: 1   SIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKH 60

Query: 269 ------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
                  NG Y  +   +F ++ +L+ +Y   +       L +RL+ P  +
Sbjct: 61  YKIRKLDNGGYYITTRAQFETLQQLVQHYSERAAG-----LSSRLVVPSHK 106

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F* Length = 106

 Score = 70.4 bits (173), Expect = 4e-15
 Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 14/99 (14%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCS-----GAPKHCLVYETERGF 474
           ++ R  AE  L   G P GTFLIR S T  G Y+LSI           KH  + + + G 
Sbjct: 11  KLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGG 70

Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            +      + +L  LV HY+  +       L + L  P 
Sbjct: 71  YYITTRAQFETLQQLVQHYSERA-----AGLSSRLVVPS 104

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F* Length = 106

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
             +   +F ++ +L+ +Y   +       L +RL+ P  +
Sbjct: 72  YITTRAQFETLQQLVQHYSERAAG-----LSSRLVVPSHK 106

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens} Length = 125

 Score = 99.7 bits (249), Expect = 3e-25
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 14/112 (12%)

Query: 210 NSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLR---KGGTNKLIK 265
           +S+   EWY   ++R      L     +G F+VRD S+K G+YT+++     G    +I+
Sbjct: 6   DSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRD-SSKAGKYTVSVFAKSTGDPQGVIR 64

Query: 266 IFH----RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
            +        +Y  +E   F+++ ELINY++H S       L +RL YPVS+
Sbjct: 65  HYVVCSTPQSQYYLAEKHLFSTIPELINYHQHNSAG-----LISRLKYPVSQ 111

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens} Length = 125

 Score = 81.2 bits (201), Expect = 9e-19
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 13/98 (13%)

Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIVCS------GAPKHCLVYETERGFG 475
            M+R+QAE LL     +G F++R S+  G+Y +S+         G  +H +V  T +   
Sbjct: 17  HMTRSQAEQLLKQEGKEGGFIVRDSSKAGKYTVSVFAKSTGDPQGVIRHYVVCSTPQSQY 76

Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
           +    +++ ++  L+ ++     + ++  L + L YPV
Sbjct: 77  YLAEKHLFSTIPELINYH-----QHNSAGLISRLKYPV 109

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens} Length = 125

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 5/40 (12%)

Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
             +E   F+++ ELINY++H S       L +RL YPVS+
Sbjct: 77  YLAEKHLFSTIPELINYHQHNSAG-----LISRLKYPVSQ 111

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score =  108 bits (272), Expect = 3e-25
 Identities = 53/294 (18%), Positives = 89/294 (30%), Gaps = 59/294 (20%)

Query: 210 NSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
           +      +++G ISR +  + L  A  ADG FL+R      G Y L+L          I 
Sbjct: 3   DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIE 62

Query: 268 HR-NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSND 326
            + NG Y  +         EL  +Y  +        L   L  P +R S         + 
Sbjct: 63  RQLNGTYAIAGGKAHCGPAELCEFYSRDPDG-----LPCNLRKPCNRPSGLEPQPGVFDC 117

Query: 327 VDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADI 386
           +        +R   +         +I+           +  +    Y             
Sbjct: 118 LRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHERMPWY------------- 164

Query: 387 HSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLVRMSRAQAEALL--SGRPDGTFLI 444
                          ++L+                     R +AE  L    + DG FL+
Sbjct: 165 --------------HSSLT---------------------REEAERKLYSGAQTDGKFLL 189

Query: 445 RPSTT-GQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANS 497
           RP    G YALS++      H L+ + + G         + +L  LV +    +
Sbjct: 190 RPRKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKA 243

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 67.7 bits (165), Expect = 4e-12
 Identities = 38/214 (17%), Positives = 62/214 (28%), Gaps = 32/214 (14%)

Query: 111 NDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYA----RGVREPPTILIQSFTF 166
                      L +     +      L  +L + C          GV +     +     
Sbjct: 72  AGGKAHCGPAELCE----FYSRDPDGLPCNLRKPCNRPSGLEPQPGVFDCLRDAMVRDYV 127

Query: 167 VLPTFSSPPALPPRKLSPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDD 226
                    AL    +S  P    +                 T +     WY   ++R++
Sbjct: 128 RQTWKLEGEALEQAIISQAPQVEKL---------------IATTAHERMPWYHSSLTREE 172

Query: 227 VNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NGRYGFSEPFKFTS 283
              KL      DG FL+R    + G Y L+L  G T     I     G+Y   E  KF +
Sbjct: 173 AERKLYSGAQTDGKFLLRP-RKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDT 231

Query: 284 VVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD 317
           + +L+ Y K ++           L       S+ 
Sbjct: 232 LWQLVEYLKLKADGLI-----YCLKEACPNSSAS 260

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 479
            +SRA+AE  L  +G  DG FL+R      G Y LS+V      H  +     G      
Sbjct: 14  SISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAG 73

Query: 480 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
              +     L   Y         D L   L  P 
Sbjct: 74  GKAHCGPAELCEFY-----SRDPDGLPCNLRKPC 102

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 125

 Score = 98.9 bits (247), Expect = 6e-25
 Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 14/112 (12%)

Query: 210 NSLRDAEWYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTLRKG------GTNK 262
            +L   EWY  +I+R+     L  ++ +G F+VRD S   G YT+++  G         K
Sbjct: 11  TNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRD-SRHLGSYTISVFMGARRSTEAAIK 69

Query: 263 LIKI-FHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
             +I  + +G++  +E   F S+ ELI Y++H +       L TRL YPV  
Sbjct: 70  HYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNAAG-----LMTRLRYPVGL 116

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 125

 Score = 81.6 bits (202), Expect = 9e-19
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)

Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIV------CSGAPKHCLVYETERGFG 475
            ++R QAE LL     +G F++R S   G Y +S+          A KH  + + + G  
Sbjct: 22  NITRNQAEHLLRQESKEGAFIVRDSRHLGSYTISVFMGARRSTEAAIKHYQIKKNDSGQW 81

Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVF-----APASG 519
           +    + + S+  L+ ++     + +   L T L YPV       P+SG
Sbjct: 82  YVAERHAFQSIPELIWYH-----QHNAAGLMTRLRYPVGLMGSSGPSSG 125

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 125

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
             +E   F S+ ELI Y++H +       L TRL YPV  
Sbjct: 82  YVAERHAFQSIPELIWYHQHNAAG-----LMTRLRYPVGL 116

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 96.6 bits (241), Expect = 3e-24
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 6/111 (5%)

Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKL 263
           SSG   NSL    WY G +SR      L+   +G+FLVR++ +  G+ +++LR  G    
Sbjct: 5   SSGTPVNSLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYH 64

Query: 264 IKIF-HRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
            +I    +G+   +   +F+++ EL++++   +       L T L YP  +
Sbjct: 65  YRINTTADGKVYVTAESRFSTLAELVHHHSTVADG-----LVTTLHYPAPK 110

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 90.0 bits (224), Expect = 8e-22
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
            +SR+ AE LLS   +G+FL+R S +  GQ ++S+   G   H  +  T  G  +    +
Sbjct: 22  PVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADGKVYVTAES 81

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPVF-----APASG 519
            + +L  LV H+         D L TTL YP        P+SG
Sbjct: 82  RFSTLAELVHHH-----STVADGLVTTLHYPAPKCNKSGPSSG 119

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 119

 Score = 94.7 bits (236), Expect = 1e-23
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 7/112 (6%)

Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKL 263
           SSG +       EW+ G ISR+D  + L     G+FL+R + +  G YTL+ +   +   
Sbjct: 5   SSGGQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCH 63

Query: 264 IKI-FHRNGRY-GFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
             +    +G +    E    TS+  L+ +++ + +          L  P  +
Sbjct: 64  FMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPI----EPRRELLTQPCRQ 111

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 119

 Score = 80.5 bits (199), Expect = 2e-18
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 2/98 (2%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTTGQ-YALSIVCSGAPKHCLVYETERGFGF-AEPFN 481
            +SR  AE LL  +P G+FLIR S +   Y LS     +  H +V   + G         
Sbjct: 22  AISREDAENLLESQPLGSFLIRVSHSHVGYTLSYKAQSSCCHFMVKLLDDGTFMIPGEKV 81

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG 519
            + SL ALV  +    +E   + L          P+SG
Sbjct: 82  AHTSLDALVTFHQQKPIEPRRELLTQPCRQKDSGPSSG 119

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ... Length = 117

 Score = 94.3 bits (235), Expect = 2e-23
 Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 2/103 (1%)

Query: 212 LRDAEWYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRN 270
           ++   W++G I R    + L     DG FL+R++ +  G+++L+++ G   +  K+    
Sbjct: 3   MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG 62

Query: 271 GRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
               F    KF S+ EL++Y++  S+S+ N  +  R +  V +
Sbjct: 63  AGKYFLWVVKFNSLNELVDYHRSTSVSR-NQQIFLRDIEQVPQ 104

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ... Length = 117

 Score = 81.2 bits (201), Expect = 8e-19
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 424 RMSRAQAEALLS-GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
           ++ RA+AE +LS  R DG FLIR S +  G ++LS+      +H  V     G  F    
Sbjct: 12  KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV- 70

Query: 481 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
             + SL  LV ++ + S+   N  +       V
Sbjct: 71  VKFNSLNELVDYHRSTSVSR-NQQIFLRDIEQV 102

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 121

 Score = 94.3 bits (235), Expect = 2e-23
 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 8/116 (6%)

Query: 201 AKMSSGPETNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKG 258
           +  SSG E  SL+   W++G I R D   +L  ++   G FL+R++ ++ G+++L++   
Sbjct: 2   SSGSSGAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDE 61

Query: 259 GTNKLIKIFHR-NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
           G  K  +I     G +  +    F+++ E +NYY   S       L  +L  P  +
Sbjct: 62  GVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTSDG-----LCVKLEKPCLK 112

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 121

 Score = 85.4 bits (212), Expect = 3e-20
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 479
            + RA AE  L  S    G FLIR S +  G ++LS++  G  KH  +   + G  F   
Sbjct: 22  AIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFFLTR 81

Query: 480 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
             ++ +L   V +Y   S     D L   L  P    
Sbjct: 82  RKVFSTLNEFVNYYTTTS-----DGLCVKLEKPCLKI 113

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 93.5 bits (233), Expect = 4e-23
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNK 262
           SSG E +      W+ G IS+ +  + L       +FLVR +    G+Y+L  R     +
Sbjct: 5   SSGREEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQ 64

Query: 263 LIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
             KI              + S+ ++I++Y+ E +          L  PV  
Sbjct: 65  RFKICPTPNNQFMMGGRYYNSIGDIIDHYRKEQIV-----EGYYLKEPVPM 110

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 14/104 (13%)

Query: 424 RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
           ++S+ +A  LL       +FL+RPS    G Y+L    +   +   +  T     F    
Sbjct: 22  KISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNN-QFMMGG 80

Query: 481 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV-----FAPASG 519
             Y S+G ++ HY      +        L  PV       P+SG
Sbjct: 81  RYYNSIGDIIDHY-----RKEQIVEGYYLKEPVPMQDQSGPSSG 119

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score = 92.7 bits (231), Expect = 7e-23
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR 269
           +S   + WY G +SR +   +L     G FLVRD+ST  G+Y L++ +        I   
Sbjct: 14  DSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSL 73

Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
             R       +F  +  L+ +YK   L        T L+ P  R
Sbjct: 74  PNRRFKIGDQEFDHLPALLEFYKIHYLDT------TTLIEPAPR 111

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score = 80.0 bits (198), Expect = 2e-18
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
            +SR +A+  L G+  G FL+R S+T  G Y LS+  +    H ++              
Sbjct: 25  PVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGD-Q 83

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            +  L AL+  Y  + L+       TTL  P 
Sbjct: 84  EFDHLPALLEFYKIHYLDT------TTLIEPA 109

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A* Length = 102

 Score = 92.3 bits (230), Expect = 7e-23
 Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 216 EWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYG 274
           EWY+G+++R      L +   +G FL+RD+ +   +++++L+  G NK  K+   +  Y 
Sbjct: 6   EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYC 65

Query: 275 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
             +  +F ++ EL+ +YK   +          L+  +
Sbjct: 66  IGQR-RFHTMDELVEHYKKAPIFTSEHGEKLYLVRAL 101

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A* Length = 102

 Score = 76.5 bits (189), Expect = 3e-17
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 424 RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
            ++R QAE  L+ R  +G FLIR S +    +++S+  SG  KH  V   +  +   +  
Sbjct: 11  NVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQ-- 68

Query: 481 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
             + ++  LV HY    +       K  L   +
Sbjct: 69  RRFHTMDELVEHYKKAPIFTSEHGEKLYLVRAL 101

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B Length = 118

 Score = 92.4 bits (230), Expect = 9e-23
 Identities = 40/114 (35%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 210 NSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGG---TNKLIK 265
           N+L   EWY   ISRD     L DT  +G F+VRD S   G YT+++        N  IK
Sbjct: 4   NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRD-SRTPGTYTVSVFTKAIISENPCIK 62

Query: 266 IFH------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
            +H         RY  +E + F S+  LI Y+++         L TRL YPV  
Sbjct: 63  HYHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGG-----LVTRLRYPVCG 111

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B Length = 118

 Score = 67.0 bits (164), Expect = 9e-14
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 15/100 (15%)

Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIVCSGAP------KHCLVYETERGFG 475
            +SR +AE LL     +G F++R S T G Y +S+            KH  + ET     
Sbjct: 15  SISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKHYHIKETNDSPK 74

Query: 476 --FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
             +     ++ S+  L+ ++     + +   L T L YPV
Sbjct: 75  RYYVAEKYVFDSIPLLIQYH-----QYNGGGLVTRLRYPV 109

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B Length = 118

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 338 TFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
             +E + F S+  LI Y+++         L TRL YPV  
Sbjct: 77  YVAEKYVFDSIPLLIQYHQYNGGG-----LVTRLRYPVCG 111

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C* Length = 111

 Score = 91.2 bits (227), Expect = 2e-22
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 211 SLRDAEWYWGDISRDDVNDKL---ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
            L    W+ G +SR      +      + G FLVR + T+ GE  LT    G  K +++ 
Sbjct: 5   PLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLS 64

Query: 268 HRNGRYGFSEPFKFTSVVELINYYKHESLS-QYNSTLDTRLLYPV 311
                    +   F S+ +++ +++   +  +   + D  L+  V
Sbjct: 65  LNAAGQCRVQHLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYV 109

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C* Length = 111

 Score = 75.4 bits (186), Expect = 8e-17
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 424 RMSRAQAEALL---SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAE 478
            +SR +A  L+        G FL+R S T  G+  L+    G  KH  +     G    +
Sbjct: 15  MLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQCRVQ 74

Query: 479 PFNIYPSLGALVLHYAANSL-EEHNDDLKTTLAYPV 513
               + S+  ++ H+  + +  E        L   V
Sbjct: 75  -HLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYV 109

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus} Length = 138

 Score = 91.8 bits (228), Expect = 2e-22
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 13/118 (11%)

Query: 207 PETNSLRDAEWYWGDISRDDVNDKL-------ADTADGTFLVRDTSTKNGEYTLTLRKGG 259
           P T      +W+   +      +KL           DGTFLVR++ T   +YTL+  + G
Sbjct: 14  PPTELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSG 73

Query: 260 TNKLIKIFHRN----GRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
             +  +I         +Y  ++   F S+  LI +Y+   L    +  + RL  PV  
Sbjct: 74  RVQHCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHL--RCAEFELRLTDPVPN 129

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus} Length = 138

 Score = 66.8 bits (163), Expect = 1e-13
 Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 13/99 (13%)

Query: 426 SRAQAEALL------SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFG-- 475
           SR  AE LL      +G  DGTFL+R S T    Y LS   SG  +HC +  T       
Sbjct: 31  SRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMK 90

Query: 476 -FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            +      + S+ AL+ HY    L     + +  L  PV
Sbjct: 91  YYLTDNLTFNSIYALIQHYREAHLR--CAEFELRLTDPV 127

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A* Length = 105

 Score = 90.0 bits (224), Expect = 4e-22
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 13/109 (11%)

Query: 212 LRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH- 268
           L    W++ ++SR D   +L       G+FL+R++ +  G ++L++R    N+   + H 
Sbjct: 1   LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 60

Query: 269 -----RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
                 NG +  S    F  + EL+ +Y + S       L TRL  P  
Sbjct: 61  KIRNLDNGGFYISPRITFPGLHELVRHYTNASDG-----LCTRLSRPCQ 104

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A* Length = 105

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 14/99 (14%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 474
            +SR  AE  L   G   G+FLIR S +  G ++LS+           KH  +   + G 
Sbjct: 10  NLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGG 69

Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            +  P   +P L  LV HY   S     D L T L+ P 
Sbjct: 70  FYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 103

>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition, tandem SH2 domains, A analog, ATP-binding, craniosynostosis, disease mutation; HET: PTR DVT ACP; 2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A* Length = 226

 Score = 91.9 bits (228), Expect = 2e-21
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 192 HSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGE 250
             R +  ++      P+TN+    EWY   ++R      L     DG FLVR    +   
Sbjct: 99  PLRCNEFEMRLSEPVPQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRK-RNEPNS 157

Query: 251 YTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
           Y ++ R  G  K  ++  + G+       +F S+V+LI+YY+   L         +L YP
Sbjct: 158 YAISFRAEGKIKHCRV-QQEGQTVMLGNSEFDSLVDLISYYEKHPLY-----RKMKLRYP 211

Query: 311 VSR 313
           ++ 
Sbjct: 212 INE 214

>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition, tandem SH2 domains, A analog, ATP-binding, craniosynostosis, disease mutation; HET: PTR DVT ACP; 2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A* Length = 226

 Score = 80.0 bits (197), Expect = 3e-17
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 424 RMSRAQAEALLSGRP-DGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
            ++RAQAE +L   P DG FL+R       YA+S    G  KHC V +  +        +
Sbjct: 128 SLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQEGQTVML--GNS 185

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + SL  L+ +Y     E+H    K  L YP+
Sbjct: 186 EFDSLVDLISYY-----EKHPLYRKMKLRYPI 212

>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition, tandem SH2 domains, A analog, ATP-binding, craniosynostosis, disease mutation; HET: PTR DVT ACP; 2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A* Length = 226

 Score = 72.6 bits (178), Expect = 9e-15
 Identities = 42/217 (19%), Positives = 79/217 (36%), Gaps = 62/217 (28%)

Query: 216 EWYWGDIS-----RDDVNDKLADTA------DGTFLVRDTSTKNGEYTLTLRKGGTNKLI 264
           +W+ G +      R      L +        DG+FLVR++ T  G+YTL+  + G  +  
Sbjct: 5   KWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHC 64

Query: 265 KIFHRN----GRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDA 320
           +I  R      ++  ++   F S+ +LI +Y+   L       + RL  PV + ++    
Sbjct: 65  RIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNE--FEMRLSEPVPQTNAHESK 122

Query: 321 DIHSNDVDKNPAPGVLRTFSEP--F----------------------------------- 343
           + +   + +  A  +L        F                                   
Sbjct: 123 EWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQEGQTVML 182

Query: 344 ---KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
              +F S+V+LI+YY+   L         +L YP++ 
Sbjct: 183 GNSEFDSLVDLISYYEKHPLY-----RKMKLRYPINE 214

>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition, tandem SH2 domains, A analog, ATP-binding, craniosynostosis, disease mutation; HET: PTR DVT ACP; 2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A* Length = 226

 Score = 63.4 bits (154), Expect = 1e-11
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 11/102 (10%)

Query: 426 SRAQAEALL------SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETE---RGF 474
            R  AE LL      +G PDG+FL+R S T  G Y LS   +G  +HC ++  +      
Sbjct: 17  GRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPK 76

Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
            F     ++ SL  L+ HY    L  +  +++ +   P    
Sbjct: 77  FFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRLSEPVPQTNA 118

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A Length = 112

 Score = 88.0 bits (219), Expect = 3e-21
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 6/104 (5%)

Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF-HR 269
           SL    WY G +SR+     L+   +G+FLVR++ +  G+ +++LR  G     +I    
Sbjct: 1   SLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTAS 60

Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
           +G+   S   +F ++ EL++++   +       L T L YP  +
Sbjct: 61  DGKLYVSSESRFNTLAELVHHHSTVADG-----LITTLHYPAPK 99

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A Length = 112

 Score = 85.0 bits (211), Expect = 3e-20
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
            +SR  AE LLS   +G+FL+R S +  GQ ++S+   G   H  +     G  +    +
Sbjct: 11  PVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSES 70

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + +L  LV H++  +     D L TTL YP 
Sbjct: 71  RFNTLAELVHHHSTVA-----DGLITTLHYPA 97

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A Length = 114

 Score = 87.1 bits (216), Expect = 6e-21
 Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 5/110 (4%)

Query: 204 SSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKL 263
           SSG     L +  WY G I R +V + L     G FLVR++  K  EY L++   G  + 
Sbjct: 5   SSGEVQKPLHEQLWYHGAIPRAEVAELL--VHSGDFLVRESQGK-QEYVLSVLWDGLPRH 61

Query: 264 IKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
             I   +  Y   E   F S+  LI++                L   V  
Sbjct: 62  FIIQSLDNLYRL-EGEGFPSIPLLIDHLLSTQQP-LTKKSGVVLHRAVPS 109

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A Length = 114

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
            + RA+   LL     G FL+R S    +Y LS++  G P+H ++   +  +        
Sbjct: 22  AIPRAEVAELL--VHSGDFLVRESQGKQEYVLSVLWDGLPRHFIIQSLDNLYRLEG--EG 77

Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYPV-FAPASG 519
           +PS+  L+ H  +             L   V   P+SG
Sbjct: 78  FPSIPLLIDHLLSTQQPLTKKS-GVVLHRAVPSGPSSG 114

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A* Length = 96

 Score = 84.9 bits (211), Expect = 2e-20
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 216 EWYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYG 274
            W++G I R    + L     DG FL+R++ +  G+++L+++ G   +  K+        
Sbjct: 4   AWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKY 63

Query: 275 FSEPFKFTSVVELINYYKHESLS 297
           F    KF S+ EL++Y++  S+S
Sbjct: 64  FLWVVKFNSLNELVDYHRSTSVS 86

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A* Length = 96

 Score = 75.3 bits (186), Expect = 5e-17
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 424 RMSRAQAEALLS-GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
           ++ RA+AE +LS  R DG FLIR S +  G ++LS+      +H  V     G  F    
Sbjct: 9   KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV- 67

Query: 481 NIYPSLGALVLHYAANSLEE 500
             + SL  LV ++ + S+  
Sbjct: 68  VKFNSLNELVDYHRSTSVSR 87

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 92.0 bits (229), Expect = 4e-20
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 5/114 (4%)

Query: 200 VAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGG 259
           V K         L    W+ G I+R+     L     G FLVR+++   G+YTL +   G
Sbjct: 65  VQKREGVKAGTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEG 124

Query: 260 TNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
             +  +I +   +    E   F ++++L+ +Y  ++       L TRL+ P   
Sbjct: 125 KVEHYRIMYHASKLSIDEEVYFENLMQLVEHYTTDADG-----LCTRLIKPKVM 173

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
           +++R QAE LL     G FL+R ST   G Y L + C G  +H  +          E   
Sbjct: 86  KITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVY 145

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + +L  LV HY  ++     D L T L  P 
Sbjct: 146 -FENLMQLVEHYTTDA-----DGLCTRLIKPK 171

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 109

 Score = 84.5 bits (209), Expect = 4e-20
 Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 23/114 (20%)

Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
           WYWG +SR +    L     G FLVRD+ST  G+Y L++ +        I     R    
Sbjct: 2   WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 61

Query: 277 EPF-----------------KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
                               +F S+  L+ +YK   L        T L+ PVSR
Sbjct: 62  PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT------TTLIEPVSR 109

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 109

 Score = 78.3 bits (193), Expect = 6e-18
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 24/108 (22%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
           R+SR +A ALL G+  G FL+R S+T  G Y LS+  +    H ++  +           
Sbjct: 6   RLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPA 65

Query: 482 I----------------YPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
                            + SL AL+  Y  + L+       TTL  PV
Sbjct: 66  QPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT------TTLIEPV 107

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 90.6 bits (225), Expect = 1e-19
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 208 ETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI- 266
             NSL    WY G +SR+     L+   +G+FLVR++ +  G+ +++LR  G     +I 
Sbjct: 98  PVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRIN 157

Query: 267 FHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
              +G+   S   +F ++ EL++++   +       L T L YP  +
Sbjct: 158 TASDGKLYVSSESRFNTLAELVHHHSTVADG-----LITTLHYPAPK 199

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
            +SR  AE LLS   +G+FL+R S +  GQ ++S+   G   H  +     G  +    +
Sbjct: 111 PVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSES 170

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + +L  LV H++  +     D L TTL YP 
Sbjct: 171 RFNTLAELVHHHSTVA-----DGLITTLHYPA 197

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A Length = 114

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 12/114 (10%)

Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADTA--DGTFLVRDTSTKNGEYTLTLR-KGGTNKL 263
               +L   +W++  ISR D   +L       G+FL+R++ +  G ++L+++      ++
Sbjct: 4   APVETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEV 63

Query: 264 IKIFH----RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
           +K +      NG Y  S    F ++  L+ +Y  +        L  +L  P   
Sbjct: 64  VKHYKIRSLDNGGYYISPRITFPTLQALVQHYSKKGDG-----LCQKLTLPCVN 112

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A Length = 114

 Score = 64.3 bits (157), Expect = 6e-13
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 13/98 (13%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP----KHCLVYETERGFG 475
            +SR  AE  L       G+FLIR S +  G ++LS+          KH  +   + G  
Sbjct: 18  TISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGY 77

Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
           +  P   +P+L ALV HY+        D L   L  P 
Sbjct: 78  YISPRITFPTLQALVQHYSKKG-----DGLCQKLTLPC 110

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A Length = 117

 Score = 81.6 bits (202), Expect = 5e-19
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 12/113 (10%)

Query: 208 ETNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNK--L 263
                R   W+ G ISR++    +      DG FLVR++      + L+L      K  L
Sbjct: 7   SAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYL 66

Query: 264 IKIFHRNGRYGFS---EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
           I      GR  FS      +FT +++L+ +++          L   L +  +R
Sbjct: 67  ILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGI-----LPCLLRHCCTR 114

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A Length = 117

 Score = 77.7 bits (192), Expect = 1e-17
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 13/102 (12%)

Query: 424 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG----FG 475
           R+SR +++ L+   G  DG FL+R S      + LS+      KH L+  +E      F 
Sbjct: 20  RISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFS 79

Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA 517
             +    +  L  LV  +     + +   L   L +     A
Sbjct: 80  MDDGQTRFTDLLQLVEFH-----QLNRGILPCLLRHCCTRVA 116

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens} Length = 126

 Score = 81.6 bits (202), Expect = 7e-19
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 12/105 (11%)

Query: 216 EWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF-HRNGR 272
            W+   ISRD+    +      DG FLVRD+ +    + L++  G   K  +I    +  
Sbjct: 27  PWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDG 86

Query: 273 YGF----SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
             F        +FT +++L+ +Y+          L  +L +  +R
Sbjct: 87  EMFHTLDDGHTRFTDLIQLVEFYQLNKGV-----LPCKLKHYCAR 126

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens} Length = 126

 Score = 73.5 bits (181), Expect = 4e-16
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 13/98 (13%)

Query: 424 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--- 476
           ++SR +A+ L+   G  DG FL+R S +    + LS+      KH  +   E        
Sbjct: 32  KISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEMFHT 91

Query: 477 -AEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
             +    +  L  LV  Y     + +   L   L +  
Sbjct: 92  LDDGHTRFTDLIQLVEFY-----QLNKGVLPCKLKHYC 124

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A* Length = 104

 Score = 80.1 bits (198), Expect = 1e-18
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 212 LRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR- 269
           +     Y G ISR+     L  T  DG++L+RD+ +  G Y L +   G     ++    
Sbjct: 1   MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60

Query: 270 NGRYGFSEPF-----KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
            G +            F  +  LI+ ++          +   L YPV +
Sbjct: 61  TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQG-----IVIPLQYPVEK 104

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A* Length = 104

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 13/98 (13%)

Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 475
           ++SR   E LL +   DG++L+R S +  G Y L ++  G      V +TE G       
Sbjct: 10  KISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETA 69

Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
                  +  +  L+  +     ++ +  +   L YPV
Sbjct: 70  PGVHKRYFRKIKNLISAF-----QKPDQGIVIPLQYPV 102

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1 Length = 103

 Score = 79.6 bits (197), Expect = 2e-18
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 12/107 (11%)

Query: 214 DAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF-HRNG 271
           D  +Y G +++ +    L     DG FL+RD+ +  G   L +         +IF  ++G
Sbjct: 2   DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHG 61

Query: 272 RY-----GFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
            Y       +    F ++ EL++ Y           L   L  P+ R
Sbjct: 62  YYRIETDAHTPRTIFPNLQELVSKYGKPG-----QGLVVHLSNPIMR 103

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1 Length = 103

 Score = 78.9 bits (195), Expect = 3e-18
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 475
            +++ + EALL  G  DG FLIR S +  G   L +          ++  + G+      
Sbjct: 9   CLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETD 68

Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
              P  I+P+L  LV  Y      +    L   L+ P+
Sbjct: 69  AHTPRTIFPNLQELVSKY-----GKPGQGLVVHLSNPI 101

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A Length = 105

 Score = 79.6 bits (197), Expect = 2e-18
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 12/105 (11%)

Query: 216 EWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NGR 272
            W+ G ISR++ +  +      DG FL+RD+ +    + LTL      K  +I    +  
Sbjct: 6   HWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDG 65

Query: 273 YGF----SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
             F        KF+ +++L+++Y+          L  +L +   R
Sbjct: 66  QTFFSLDDGNTKFSDLIQLVDFYQLNKGV-----LPCKLKHHCIR 105

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A Length = 105

 Score = 76.5 bits (189), Expect = 3e-17
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 13/98 (13%)

Query: 424 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG----FG 475
           R+SR ++  ++   G  DG FL+R S +    + L++      K+  +   E      F 
Sbjct: 11  RISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFS 70

Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
             +    +  L  LV  Y     + +   L   L +  
Sbjct: 71  LDDGNTKFSDLIQLVDFY-----QLNKGVLPCKLKHHC 103

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A Length = 128

 Score = 80.5 bits (199), Expect = 2e-18
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 12/126 (9%)

Query: 212 LRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR- 269
           +     Y G ISR+     L  T  DG++L+RD+ +  G Y L +   G     ++    
Sbjct: 1   MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60

Query: 270 NGRYGFSEPF-----KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHS 324
            G +            F  +  LI+ ++          +   L YPV + SS       +
Sbjct: 61  TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQG-----IVIPLQYPVEKKSSARSTQGTT 115

Query: 325 NDVDKN 330
              +  
Sbjct: 116 GIREDP 121

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A Length = 128

 Score = 76.3 bits (188), Expect = 5e-17
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 13/107 (12%)

Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 475
           ++SR   E LL +   DG++L+R S +  G Y L ++  G      V +TE G       
Sbjct: 10  KISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETA 69

Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMTV 522
                  +  +  L+  +     ++ +  +   L YPV   +S  + 
Sbjct: 70  PGVHKRYFRKIKNLISAF-----QKPDQGIVIPLQYPVEKKSSARST 111

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A Length = 131

 Score = 78.8 bits (194), Expect = 8e-18
 Identities = 30/137 (21%), Positives = 42/137 (30%), Gaps = 29/137 (21%)

Query: 192 HSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEY 251
           H    S  +          S     WY   +SRD     L D   G FL+RD+ +  G Y
Sbjct: 3   HHHHHSSGLVPR------GSDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAY 56

Query: 252 TLTLR----------KGGTNKLIKIFH------RNGRY--GFSEPFKFTSVVELINYYKH 293
            L L+            G      + H        G    G      F S+  L++ +  
Sbjct: 57  GLALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSI 116

Query: 294 ESLSQYNSTLDTRLLYP 310
             +S     L   L  P
Sbjct: 117 SPIS-----LPCCLRIP 128

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A Length = 131

 Score = 71.1 bits (174), Expect = 5e-15
 Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 26/109 (23%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAP---------------KHCL 466
            +SR QA ALL  +  G FLIR S +  G Y L++  +  P               +H L
Sbjct: 26  HLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFL 85

Query: 467 VYETERGF---GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
           +    +G    G       + SL ALV  ++ +        L   L  P
Sbjct: 86  IETGPKGVKIKGCPSEP-YFGSLSALVSQHSISP-----ISLPCCLRIP 128

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 119

 Score = 78.5 bits (194), Expect = 8e-18
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 12/104 (11%)

Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI-FHRNGRY- 273
           W  G+I+R    + L+ T  DG+FLVR + + +  Y L +         +I  + + ++ 
Sbjct: 12  WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFT 71

Query: 274 ----GFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
                      FT + +LI +YK E++      L T L YPV  
Sbjct: 72  VQASEGVSMRFFTKLDQLIEFYKKENMG-----LVTHLQYPVPL 110

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 119

 Score = 76.6 bits (189), Expect = 4e-17
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 424 RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 475
            ++R++AE LLS    DG+FL+R S +    YAL ++         +   E         
Sbjct: 16  NITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQAS 75

Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
                  +  L  L+  Y     ++ N  L T L YPV
Sbjct: 76  EGVSMRFFTKLDQLIEFY-----KKENMGLVTHLQYPV 108

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 81.1 bits (201), Expect = 7e-17
 Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 10/111 (9%)

Query: 204 SSGPETN-SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNK 262
           S  PE    L +  WY G I R +V + L     G FLVR++  K  EY L++   G  +
Sbjct: 1   SMIPEVQKPLHEQLWYHGAIPRAEVAELL--VHSGDFLVRESQGK-QEYVLSVLWDGLPR 57

Query: 263 LIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
              I          E   F S+  LI++            L  +    + R
Sbjct: 58  HFII-QSLDNLYRLEGEGFPSIPLLIDHLLSTQQP-----LTKKSGVVLHR 102

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 482
            + RA+   LL     G FL+R S    +Y LS++  G P+H ++   +  +        
Sbjct: 19  AIPRAEVAELL--VHSGDFLVRESQGKQEYVLSVLWDGLPRHFIIQSLDNLYRLEGEG-- 74

Query: 483 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
           +PS+  L+ H  +         L       +   
Sbjct: 75  FPSIPLLIDHLLSTQ-----QPLTKKSGVVLHRA 103

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231

 Score = 77.0 bits (190), Expect = 4e-16
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 49  PGNASQVAELFHA-----YSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKF 103
            G  S+V +L         + E ++   ++ E   +   LKTYL+ L  PL+ Y +   F
Sbjct: 62  VGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSF 121

Query: 104 VSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
           +      N     S + +LV   P  +   L  LM HLA++  
Sbjct: 122 IKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVAD 164

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246

 Score = 77.0 bits (190), Expect = 4e-16
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 1/99 (1%)

Query: 49  PGNASQVAELFHAY-SGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLL 107
            GN S++  L   +                 +A  +K++   L +PL+PY      V   
Sbjct: 93  SGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAH 152

Query: 108 SGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
             ++       L  +++ FP  +    +Y+++HL ++  
Sbjct: 153 KINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSH 191

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202

 Score = 75.7 bits (187), Expect = 5e-16
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 3/101 (2%)

Query: 49  PGNASQVAELFHAYSGEIKSYNFSKLEPA---LLAIMLKTYLKSLTEPLIPYVYYEKFVS 105
            G +  + ++  A+  + +  + S        ++   LK Y + L  PLI Y  Y KF+ 
Sbjct: 49  SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 108

Query: 106 LLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
                +       L   ++  P  H   LRYLMAHL R+  
Sbjct: 109 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTL 149

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209

 Score = 75.0 bits (185), Expect = 9e-16
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 1/99 (1%)

Query: 49  PGNASQVAELFHAY-SGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLL 107
            GN +    +   +      +    ++    +A  LK +   L +PLIPY  + + +   
Sbjct: 52  SGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAA 111

Query: 108 SGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
              +       L  +V+ F   ++   RY++ HL R+  
Sbjct: 112 KIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQ 150

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 23/98 (23%), Positives = 38/98 (38%)

Query: 49  PGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLS 108
            G  S++  L     G I   N+       +A MLK Y + L EPL+     E F+ +  
Sbjct: 61  SGVKSRIQALRQMNEGAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 120

Query: 109 GSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
                     + A +   P  +   L+ L+  L+ + A
Sbjct: 121 YVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTA 158

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 78.0 bits (192), Expect = 2e-15
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 13/115 (11%)

Query: 207 PETNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLI 264
             ++S++  EWY+G I+R +    L  A+   GTFLVR++ T  G Y L++      K +
Sbjct: 140 APSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGL 199

Query: 265 KIFH------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
            + H       +G +  +   +F S+ +L+ YY   +       L  RL      
Sbjct: 200 NVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADG-----LCHRLTTVCPT 249

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 14/99 (14%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 474
           +++R ++E LL  +  P GTFL+R S T  G Y LS+           KH  + + + G 
Sbjct: 154 KITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGG 213

Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            +      + SL  LV +Y+ ++     D L   L    
Sbjct: 214 FYITSRTQFNSLQQLVAYYSKHA-----DGLCHRLTTVC 247

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201

 Score = 73.8 bits (182), Expect = 2e-15
 Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 49  PGNASQVAELFHAYSGEIKSYNFSKLEPA-LLAIMLKTYLKSLTEPLIPYVYYEKFVSLL 107
            G    V EL   +         SK++    +  +LK +L++L EPL+ +     F+   
Sbjct: 42  SGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAA 101

Query: 108 SGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMC 145
             +++ +  + ++  V + P  +   L +LM HL R+ 
Sbjct: 102 EITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVA 139

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 73.2 bits (179), Expect = 2e-15
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 13/104 (12%)

Query: 217 WYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH------ 268
           W++ ++SR D   +L       G+FL+R++ +  G ++L++R    N+   + H      
Sbjct: 76  WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 135

Query: 269 RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
            NG +  S    F  + EL+ +Y + S       L TRL  P  
Sbjct: 136 DNGGFYISPRITFPGLHELVRHYTNASDG-----LCTRLSRPCQ 174

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 14/99 (14%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 474
            +SR  AE  L   G   G+FLIR S +  G ++LS+           KH  +   + G 
Sbjct: 80  NLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGG 139

Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            +  P   +P L  LV HY        +D L T L+ P 
Sbjct: 140 FYISPRITFPGLHELVRHY-----TNASDGLCTRLSRPC 173

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 3/101 (2%)

Query: 49  PGNASQVAELFHAY-SGEIKSYNFSKLEPALLAI--MLKTYLKSLTEPLIPYVYYEKFVS 105
            G AS +  L H + S  +           + ++  + K Y + L  PL+ Y  YEKF  
Sbjct: 61  SGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSD 120

Query: 106 LLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
            +S + D     ++  ++Q  P  H+  L +LM HL+ +  
Sbjct: 121 AVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLAD 161

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 75.8 bits (185), Expect = 3e-15
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 203 MSSGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNK 262
           MSS    +S   + WY G +SR +   +L     G FLVRD+ST  G+Y L++ +     
Sbjct: 1   MSSARF-DSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVS 59

Query: 263 LIKIFHRNGRYGFSEPFKFTSVVELINYYKH 293
              I     R       +F  +  L+ +YK 
Sbjct: 60  HYIINSLPNRRFKIGDQEFDHLPALLEFYKI 90

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 62.7 bits (151), Expect = 5e-11
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
            +SR +A+  L G+  G FL+R S+T  G Y LS+  +    H ++        F     
Sbjct: 18  PVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRR-FKIGDQ 76

Query: 482 IYPSLGALVLHYAAN 496
            +  L AL+  Y  +
Sbjct: 77  EFDHLPALLEFYKIH 91

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens} Length = 125

 Score = 71.4 bits (175), Expect = 3e-15
 Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 210 NSLRDAEWYWGDISRDDVNDKL-ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIK--- 265
           + L      +  +SR +  + L  + + G  ++R   + +  Y++T+R+      IK   
Sbjct: 10  DVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRP-GSDSRNYSITIRQEIDIPRIKHYK 68

Query: 266 IFHRNGRYGF--SEPFKFTSVVELINYYKHES 295
           +      Y     +P    ++  +I+Y+  E+
Sbjct: 69  VMSVGQNYTIELEKPVTLPNLFSVIDYFVKET 100

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens} Length = 125

 Score = 64.1 bits (156), Expect = 1e-12
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 405 SGAVASTVDFESGEKTWLVRMSRAQAEALLSGRP-DGTFLIRPSTT-GQYALSIVCS--- 459
           SG     VD  +        +SR +A  +L   P  G  ++RP +    Y+++I      
Sbjct: 2   SGRAMDYVDVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSDSRNYSITIRQEIDI 61

Query: 460 GAPKHCLVYETERGFGFA-EPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
              KH  V    + +    E     P+L +++ ++      +            
Sbjct: 62  PRIKHYKVMSVGQNYTIELEKPVTLPNLFSVIDYF-----VKETRGNLRPFIAS 110

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201

 Score = 72.7 bits (179), Expect = 6e-15
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 49  PGNASQVAELFHAY-SGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLL 107
             N     EL     SG     +       ++A +LK +L+++   +     Y+ +VS++
Sbjct: 51  SANVKSCRELKEKLNSGV--EVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVM 108

Query: 108 SGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLAR 143
              ND    + +  L+   P  +   LRYL   L  
Sbjct: 109 DQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHN 144

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214

 Score = 72.7 bits (179), Expect = 6e-15
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 49  PGNASQVAELFHAYSGEIKSYNFSKLEPA---LLAIMLKTYLKSLTEPLIPYVYYEKFVS 105
            GN + + +L    + E +  N    +     ++   LK + + L EPL PY ++E+FV 
Sbjct: 60  SGNLATIQKLRFIVNQE-EKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVE 118

Query: 106 LLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
            +   ++      + +LVQ  P  +   ++ L  HL ++ A
Sbjct: 119 AIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVA 159

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 11/115 (9%)

Query: 83  LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLA 142
           +K++L +L  PL+      +    L  +                P H    LR+L+ HL 
Sbjct: 90  IKSFLLALPAPLVTPEASAEARRALREAAGP---VGPALEPPTLPLHRALTLRFLLQHLG 146

Query: 143 RMCALQYARGVREPPTILIQSFTFVLPTFSSPPALPPRKLSPRPSATYVHSRQSS 197
           R+   + A  +      L  +F    P     P  P    SP P      S  S 
Sbjct: 147 RVA--RRAPALGPAVRALGATFG---PLLLRAPPPPS---SPPPGGAPDGSEPSP 193

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 3/101 (2%)

Query: 49  PGNASQVAELFHAYSGEIKSYNFSKLEPA---LLAIMLKTYLKSLTEPLIPYVYYEKFVS 105
            G +  + ++  A+  + +  + S        ++   LK Y + L  PLI Y  Y KF+ 
Sbjct: 310 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 369

Query: 106 LLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
                +       L   ++  P  H   LRYLMAHL R+  
Sbjct: 370 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTL 410

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 218 YWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSE 277
           + G ISR+   D+L   A+G++L+R++  + G YTL LR G   +  ++++    +    
Sbjct: 54  FHGMISREAA-DQLLIVAEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYDGKHF--VG 110

Query: 278 PFKFTSVVELI 288
             +F S+ +L+
Sbjct: 111 EKRFESIHDLV 121

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198

 Score = 70.7 bits (174), Expect = 2e-14
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 49  PGNASQVAELFHAY-SGEIKSYNFSKLE-PALLAIMLKTYLKSLTEPLIPYVYYEKFVSL 106
             N   V E+   Y  G     +F +     L A++LKT+L+ L EPL+ +  Y   V  
Sbjct: 51  SANTQVVREVQQKYNMGL--PVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGF 108

Query: 107 LSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
           L+    + +      ++Q  P  ++  LR+L A L ++ A
Sbjct: 109 LNIDESQRV-PATLQVLQTLPEENYQVLRFLTAFLVQISA 147

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 13/114 (11%)

Query: 207 PETNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLI 264
             ++S++  EWY+G I+R +    L  A+   GTFLVR++ T  G Y L++      K +
Sbjct: 57  APSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGL 116

Query: 265 KIFH------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
            + H       +G +  +   +F S+ +L+ YY   +       L  RL     
Sbjct: 117 NVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADG-----LCHRLTTVCP 165

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 14/104 (13%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 474
           +++R ++E LL  +  P GTFL+R S T  G Y LS+           KH  + + + G 
Sbjct: 71  KITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGG 130

Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPAS 518
            +      + SL  LV +Y+ ++     D L   L         
Sbjct: 131 FYITSRTQFNSLQQLVAYYSKHA-----DGLCHRLTTVCPTSKP 169

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 13/114 (11%)

Query: 208 ETNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLR-----KGGT 260
             +SL   EW++  ISR D   +L       G+F++RD+ T  G Y+L++R     +G T
Sbjct: 63  RVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDT 122

Query: 261 NKLIKIFHR-NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
            K  KI    NG +  S    F+++ EL+++YK  +       L  +L  P   
Sbjct: 123 VKHYKIRTLDNGGFYISPRSTFSTLQELVDHYKKGNDG-----LCQKLSVPCMS 171

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 14/99 (14%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSI-----VCSGAPKHCLVYETERGF 474
            +SR  AE  L   G   G+F+IR S T  G Y+LS+           KH  +   + G 
Sbjct: 76  GISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGG 135

Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            +  P + + +L  LV HY   +     D L   L+ P 
Sbjct: 136 FYISPRSTFSTLQELVDHYKKGN-----DGLCQKLSVPC 169

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242

 Score = 70.1 bits (172), Expect = 8e-14
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 49  PGNASQVAELFHAY-SGEIKSYNFSKLE-PALLAIMLKTYLKSLTEPLIPYVYYEKFVSL 106
             N   V E+   Y  G     +F +     L A++LKT+L+ L EPL+ +  Y   V  
Sbjct: 87  SANTQVVREVQQKYNMGL--PVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGF 144

Query: 107 LSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCA 146
           L+    + +      ++Q  P  ++  LR+L A L ++ A
Sbjct: 145 LNIDESQRV-PATLQVLQTLPEENYQVLRFLTAFLVQISA 183

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 4/101 (3%)

Query: 49  PGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLLS 108
             + S +AEL      +  S +   ++  +LA   K YL  L  P+IP   Y + +SL  
Sbjct: 50  QSS-SNLAELRQLLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAP 108

Query: 109 GSNDRH-IGSRLFALVQ--DFPAHHFSALRYLMAHLARMCA 146
                      L  L++    P  ++  L+YL+ H  ++  
Sbjct: 109 EVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQ 149

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 69.5 bits (169), Expect = 1e-13
 Identities = 21/85 (24%), Positives = 32/85 (37%)

Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR 269
           +S   + WYWG +SR +    L     G FLVRD+ST  G+Y L++ +        I   
Sbjct: 8   DSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSS 67

Query: 270 NGRYGFSEPFKFTSVVELINYYKHE 294
             R                +  +  
Sbjct: 68  GPRPPVPPSPAQPPPGVSPSRLRIG 92

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 61.4 bits (148), Expect = 7e-11
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
           R+SR +A ALL G+  G FL+R S+T  G Y LS+  +    H ++  +           
Sbjct: 19  RLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPA 78

Query: 482 IYPS 485
             P 
Sbjct: 79  QPPP 82

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271

 Score = 68.6 bits (168), Expect = 4e-13
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 49  PGNASQVAELFHAY-SGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVYYEKFVSLL 107
            G+  ++  L +    GE      S   P  +A +LK + + L EP++P   +E  +   
Sbjct: 107 SGSVIRLKALKNKVDHGEG---CLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQ 163

Query: 108 SGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLAR 143
               +         L      H    LRY    L  
Sbjct: 164 QLGTEEKN-KATLLLSCLLADHTVHVLRYFFNFLRN 198

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366

 Score = 67.3 bits (164), Expect = 2e-12
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 11/106 (10%)

Query: 40  GLSAANLF-EPGNASQVAELFHAY-SGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPY 97
                +LF  PG   ++ ++     +   ++   S      +A  L  +L++L EP+I Y
Sbjct: 214 ACHQEDLFQTPGMQEELQQIIDCLDTSIPETIPGS---NHSVAEALLIFLEALPEPVICY 270

Query: 98  VYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLAR 143
             Y++ +                 ++   P  H +  RYLMA L  
Sbjct: 271 ELYQRCLDSAYDPR------ICRQVISQLPRCHRNVFRYLMAFLRE 310

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 65.4 bits (158), Expect = 8e-12
 Identities = 21/86 (24%), Positives = 32/86 (37%)

Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR 269
           +S   + WYWG +SR +    L     G FLVRD+ST  G+Y L++ +        I   
Sbjct: 6   DSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSS 65

Query: 270 NGRYGFSEPFKFTSVVELINYYKHES 295
             R                +  +   
Sbjct: 66  GPRPPVPPSPAQPPPGVSPSRLRIGD 91

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 56.1 bits (134), Expect = 7e-09
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAE 478
           R+SR +A ALL G+  G FL+R S+T  G Y LS+  +    H ++  +        
Sbjct: 17  RLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPP 73

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 63.5 bits (154), Expect = 1e-11
 Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 216 EWYWGDISRDDVNDKLA-DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYG 274
            W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        
Sbjct: 59  PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKY 118

Query: 275 FSEPFKFTSVVELINYYKHESLS 297
           F    KF S+ EL++Y++  S+S
Sbjct: 119 FLWVVKFNSLNELVDYHRSTSVS 141

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 57.0 bits (137), Expect = 2e-09
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 402 TNLSGAVASTVDFESGEKTWLVRMSRAQAEALLS-GRPDGTFLIRPSTT--GQYALSIVC 458
               G +            +  ++ RA+AE +LS  R DG FLIR S +  G ++LS+  
Sbjct: 42  NGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKF 101

Query: 459 SGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSL 498
               +H  V     G  +      + SL  LV ++ + S+
Sbjct: 102 GNDVQHFKVLRDGAGK-YFLWVVKFNSLNELVDYHRSTSV 140

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 59.4 bits (143), Expect = 5e-11
 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 204 SSGPETNSLRDAEWYWGDISRDDVN------DKLADTADGTFLVRDTSTKNGEYTLTLRK 257
           S             +       +V           +  DG + +R++STK+G+  +   +
Sbjct: 6   SGEDYEKVPLPNSVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDE 65

Query: 258 GGTN-KLIKIFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTL 303
                +  +IF ++ ++       F SV  ++ +Y    L  + S L
Sbjct: 66  TSNKVRNYRIFEKDSKFYLEGEVLFVSVGSMVEHYHTHVLPSHQSLL 112

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 429 QAEALLSGRPDGTFLIRPSTT--GQYALSIVCS-GAPKHCLVYETERGFGFAEPFNIYPS 485
           +A +      DG + IR S+T  G+  +    +    ++  ++E +  F       ++ S
Sbjct: 34  KATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRIFEKDSKFYLEGEV-LFVS 92

Query: 486 LGALVLHYAANSLEEHNDDLKTTLAYP---VFAPASG 519
           +G++V HY  + L  H       L +P      P+SG
Sbjct: 93  VGSMVEHYHTHVLPSHQS---LLLRHPYGYTSGPSSG 126

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens} Length = 118

 Score = 54.4 bits (130), Expect = 2e-09
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 196 SSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLA-DTADGTFLVRDTSTKNGEYTLT 254
           SS    ++ +  E     +    +  +SR +    L      G  L+R +       ++T
Sbjct: 2   SSGSSGEVLAKEEARRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVT 61

Query: 255 LRKGGTNKLI----KIFHRNGRY--GFSEPFKFTSVVELINYYKHES 295
            R+      +    K+     +Y     +PF  TS+  ++NY+   +
Sbjct: 62  TRQMHNGTHVVRHYKVKREGPKYVIDVEQPFSCTSLDAVVNYFVSHT 108

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens} Length = 118

 Score = 47.1 bits (111), Expect = 9e-07
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 421 WLVRMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAP----KHCLVYETERG 473
             +++SR +A+ LL   P  G  L+RPS       +++           +H  V      
Sbjct: 24  CFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGPK 83

Query: 474 F--GFAEPFNIYPSLGALVLHYAANS 497
           +     +PF+   SL A+V ++ +++
Sbjct: 84  YVIDVEQPFSC-TSLDAVVNYFVSHT 108

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 55.6 bits (133), Expect = 1e-08
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 13/119 (10%)

Query: 192 HSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNG 249
            S  +S+   +  +    +      +Y+  +SR++ +  L +   + GTFL+RD S++ G
Sbjct: 18  GSHMASMTGGQQMTTNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRD-SSRPG 76

Query: 250 EYTLTLRKGGTNKLIKIF----HRNGRYG------FSEPFKFTSVVELINYYKHESLSQ 298
           EY+LT+R+      +  +          G            F  +  L+N++K   L++
Sbjct: 77  EYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTE 135

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 12/151 (7%)

Query: 379 SSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLVRMSRAQAEALLS--G 436
            S      HS+ +    +   + T       +  D       +   MSR +A  LL    
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMTGGQQMTTNGFDPFEWRSFYFPGMSREEAHKLLGEPQ 61

Query: 437 RPDGTFLIRPSTT-GQYALSIVCSGAP---KHCLVYETERGFGFAEP--FNI----YPSL 486
              GTFL+R S+  G+Y+L++  +       H L+   E            I    +P +
Sbjct: 62  VSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDI 121

Query: 487 GALVLHYAANSLEEHNDDLKTTLAYPVFAPA 517
            AL+ H+    L E +               
Sbjct: 122 PALLNHFKMRVLTEASLLAAYKKPIIEVVVG 152

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A* Length = 532

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W+  D+S  D    L      G+FL R +    G+++L++R G     I+I +    Y  
Sbjct: 4   WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63

Query: 276 SEPFKFTSVVELINYYKHE 294
               KF ++ EL+ YY  +
Sbjct: 64  YGGEKFATLTELVEYYTQQ 82

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A* Length = 532

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 11/101 (10%)

Query: 424 RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--AE 478
            +S   AE LL GR   G+FL RPS    G ++LS+       H  +  +   +     E
Sbjct: 8   DLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGE 67

Query: 479 PFNIYPSLGALVLHYAAN--SLEEHNDDLKTTLAYPVFAPA 517
            F    +L  LV +Y      L++ +  +   L YP+    
Sbjct: 68  KF---ATLTELVEYYTQQQGVLQDRDGTI-IHLKYPLNCSD 104

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens} Length = 595

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W+  D+S  D    L      G+FL R +    G+++L++R G     I+I +    Y  
Sbjct: 4   WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63

Query: 276 SEPFKFTSVVELINYYKHE 294
               KF ++ EL+ YY  +
Sbjct: 64  YGGEKFATLTELVEYYTQQ 82

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens} Length = 595

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 11/101 (10%)

Query: 424 RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--AE 478
            +S   AE LL GR   G+FL RPS    G ++LS+       H  +  +   +     E
Sbjct: 8   DLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGE 67

Query: 479 PFNIYPSLGALVLHYAAN--SLEEHNDDLKTTLAYPVFAPA 517
            F    +L  LV +Y      L++ +      L YP+    
Sbjct: 68  KF---ATLTELVEYYTQQQGVLQDRDGT-IIHLKYPLNCSD 104

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 9e-08
 Identities = 65/455 (14%), Positives = 126/455 (27%), Gaps = 145/455 (31%)

Query: 46  LFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTY--LKSL--TEPLIPYVYYE 101
           +      S    LF      + S     ++  +  ++   Y  L S   TE   P +   
Sbjct: 55  IMSKDAVSGTLRLF----WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 102 KFVSLLSGSNDRHIGSRLFALVQDFPAHH------FSALR----------YLMAH----- 140
            ++             RL+   Q F  ++      +  LR           ++       
Sbjct: 111 MYIEQRD---------RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 141 ----LARMCALQYAR------GV--------REPPTILIQSFTFVLPTFSSPPALPPRKL 182
               +A    L Y         +          P T+L      +     +  +      
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 183 SPRPSATYVHSRQSSLDVAKMSSGPETNSLRDAEWYWGDISRDDVND-KLADTADG--TF 239
           + +     + +    L    + S P  N L         +   +V + K  +  +     
Sbjct: 222 NIKLRIHSIQAELRRL----LKSKPYENCL---------LVLLNVQNAKAWNAFNLSCKI 268

Query: 240 LVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSE---------------------- 277
           L+  T T+  + T  L    T   I + H +     +                       
Sbjct: 269 LL--T-TRFKQVTDFL-SAATTTHISLDHHSM--TLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 278 ----PFKFTSVVELI-------NYYKHESLSQYNSTLDTRL--LYPV---SRFSS----D 317
               P + + + E I       + +KH +  +  + +++ L  L P      F       
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 318 VDADIHSNDVDKNPAPGVLRTF------SEPFKFTSVVELINYYKHESL---SQYNSTLD 368
             A I        P   +L         S+      V +L  Y    SL       ST+ 
Sbjct: 383 PSAHI--------P-TILLSLIWFDVIKSDVMVV--VNKLHKY----SLVEKQPKESTIS 427

Query: 369 TRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTN 403
              +Y   +   + +  +H + VD Y N+   F +
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDS 461

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1 Length = 525

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 217 WYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W+  +I+  +  + L     DG+FL R + +  G+ TL++R+ G    IKI +    Y  
Sbjct: 6   WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDL 65

Query: 276 SEPFKFTSVVELINYYK--HESLSQYNSTLDTRLLYPV 311
               KF ++ EL+ YY   H  L + N  +   L YP+
Sbjct: 66  YGGEKFATLAELVQYYMEHHGQLKEKNGDV-IELKYPL 102

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1 Length = 525

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 11/100 (11%)

Query: 424 RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--AE 478
            ++  +AE LL  R  DG+FL RPS +  G   LS+  +GA  H  +  T   +     E
Sbjct: 10  NITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYGGE 69

Query: 479 PFNIYPSLGALVLHY--AANSLEEHNDDLKTTLAYPVFAP 516
            F    +L  LV +Y      L+E N D+   L YP+   
Sbjct: 70  KF---ATLAELVQYYMEHHGQLKEKNGDV-IELKYPLNCA 105

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 48.2 bits (114), Expect = 9e-07
 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 13/103 (12%)

Query: 210 NSLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
           +      +Y+  +SR++ +  L +   + GTFL+RD S++ GEY+LT+R+      +  +
Sbjct: 7   DPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRD-SSRPGEYSLTVREADEGNAVCHY 65

Query: 268 ----HRNGRYG------FSEPFKFTSVVELINYYKHESLSQYN 300
                     G            F  +  L+N++K   L++ +
Sbjct: 66  LIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEAS 108

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 424 RMSRAQAEALLS--GRPDGTFLIRPSTT-GQYALSIVCS---GAPKHCLVYETERGF--- 474
            MSR +A  LL       GTFL+R S+  G+Y+L++  +    A  H L+   E      
Sbjct: 18  GMSREEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDGT 77

Query: 475 ---GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA 517
              G       +P + AL+ H+    L E +               
Sbjct: 78  AAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVG 123

>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A* Length = 473

 Score = 48.0 bits (113), Expect = 5e-06
 Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 214 DAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRY 273
                +G + R +VND L +   GTF++R +    G++ +          IK +      
Sbjct: 350 QEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYL---VQ 406

Query: 274 GFSEPFKFTSVVELI-NYYKHESLSQYNSTLDTRLLYP 310
                    +  + +  + +  +L Q+    +    + 
Sbjct: 407 PNDTAAAKKTFPDFLSEHSQFVNLLQWTKDTNGAPRFL 444

>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A* Length = 473

 Score = 42.3 bits (98), Expect = 3e-04
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 17/96 (17%)

Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVC---SGAPKHCLVYETERGFG---F 476
           M R +    L  +  GTF+IR S    GQ+ ++ +        KH LV   +       F
Sbjct: 358 MGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDTAAAKKTF 417

Query: 477 AEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
            +  + +             +L +   D      + 
Sbjct: 418 PDFLSEHSQF---------VNLLQWTKDTNGAPRFL 444

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	523
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	100.0
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	100.0
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	100.0
4fbn_A	246	1-phosphatidylinositol 4,5-bisphosphate phosphodi	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	100.0
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	100.0
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	100.0
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	99.97
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	99.97
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	99.97
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	99.97
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	99.97
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	99.97
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	99.97
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	99.97
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	99.97
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	99.96
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	99.96
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	99.96
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	99.95
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	99.95
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	99.94
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	99.93
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	99.92
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	99.92
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.92
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	99.92
2lnw_A	122	VAV-2, guanine nucleotide exchange factor VAV2; si	99.91
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	99.91
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	99.91
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	99.91
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	99.9
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	99.9
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	99.9
2dly_A	121	FYN-related kinase; BRK family kinase, structural	99.9
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	99.9
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	99.9
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	99.9
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	99.9
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	99.9
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	99.9
2dly_A	121	FYN-related kinase; BRK family kinase, structural	99.9
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	99.9
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	99.89
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	99.89
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	99.89
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	99.89
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	99.89
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	99.89
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	99.89
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.89
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	99.89
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	99.89
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.89
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	99.89
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	99.89
2lnw_A	122	VAV-2, guanine nucleotide exchange factor VAV2; si	99.89
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	99.88
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	99.88
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.88
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	99.88
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.88
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	99.88
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	99.88
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	99.88
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	99.88
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	99.88
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	99.88
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	99.88
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	99.88
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	99.88
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	99.87
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	99.87
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	99.87
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	99.87
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	99.87
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	99.87
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	99.87
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	99.87
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	99.87
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	99.87
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	99.87
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.86
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	99.86
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	99.86
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	99.86
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	99.86
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	99.86
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	99.86
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	99.86
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	99.86
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	99.85
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.85
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	99.85
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	99.85
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	99.85
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	99.76
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	99.85
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	99.85
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	99.85
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	99.85
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	99.85
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	99.85
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.85
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.85
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	99.85
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	99.85
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	99.84
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	99.84
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.84
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	99.84
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	99.84
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	99.84
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	99.83
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	99.83
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	99.83
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.83
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.82
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	99.82
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	99.82
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	99.81
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	99.81
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	99.81
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	99.81
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	99.81
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	99.8
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	99.8
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	99.8
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	99.78
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	99.78
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	99.78
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.77
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	99.77
4fbn_A	246	1-phosphatidylinositol 4,5-bisphosphate phosphodi	99.77
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.76
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.76
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	99.75
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.75
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	99.75
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.75
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.75
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.74
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.72
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.72
2xp1_A	178	SPT6; transcription, IWS1, histone chaperone, mRNA	99.72
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.71
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.71
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.7
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.7
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.7
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	99.7
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	99.7
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.69
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.69
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.67
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.66
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	99.47
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.65
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	99.64
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	99.63
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	99.59
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.25
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	99.25
2xp1_A	178	SPT6; transcription, IWS1, histone chaperone, mRNA	98.94
1uur_A	473	Stata protein, STAT protein; transcription activat	98.08
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	97.91
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	97.82
3psi_A	1219	Transcription elongation factor SPT6; nucleus; 3.3	97.77
1uur_A	473	Stata protein, STAT protein; transcription activat	97.35
1y1u_A	585	Signal transducer and activator of transcription;	97.02
1yvl_A	683	Signal transducer and activator of transcription 1	96.91
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	96.87
1bf5_A	575	Signal transducer and activator of transcription 1	96.43
1bg1_A	596	Protein (transcription factor STAT3B); protein-DNA	96.34
3bux_B	329	E3 ubiquitin-protein ligase CBL; TKB, signal trans	95.84
3op0_A	323	Signal transduction protein CBL-C; structural geno	95.54
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	95.39
1y1u_A	585	Signal transducer and activator of transcription;	94.97
1yvl_A	683	Signal transducer and activator of transcription 1	94.21
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	93.54
3psi_A	1219	Transcription elongation factor SPT6; nucleus; 3.3	93.36
3bux_B	329	E3 ubiquitin-protein ligase CBL; TKB, signal trans	92.92
1bf5_A	575	Signal transducer and activator of transcription 1	92.26
1bg1_A	596	Protein (transcription factor STAT3B); protein-DNA	92.08
3op0_A	323	Signal transduction protein CBL-C; structural geno	92.01
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	91.88
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	91.49
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	91.14
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	90.33
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	90.15
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	90.08
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	89.19
1awj_A	77	ITK; transferase, regulatory intramolecular comple	88.7
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	88.51
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	88.48
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	87.9
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	87.76
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	87.71
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	87.69
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	87.13
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	87.0
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	86.95
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	86.82
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	86.81
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	86.42
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	86.32
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	86.15
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	85.9
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	85.84
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	85.02
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	84.98
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	84.87
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	84.73
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	84.7
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	84.46
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	84.22
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	84.09
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	83.65
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	83.5
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	83.47
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	83.36
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	83.08
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	82.62
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	82.55
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	82.46
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	82.44
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	82.31
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	82.3
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	82.18
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	82.13
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	81.96
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	81.95
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	81.44
1u3o_A	82	Huntingtin-associated protein-interacting protein;	81.07
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	81.03
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	81.01
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	80.84
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	80.42
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	80.23
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	80.22

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=100.00  E-value=1.2e-44  Score=366.28  Aligned_cols=276  Identities=46%  Similarity=0.762  Sum_probs=137.1

Q ss_pred             CCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCC-CCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHH
Q psy8552         210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELI  288 (523)
Q Consensus       210 ~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~-~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV  288 (523)
                      .+++.++||||.|+|++||++|.+.++|+||||+|++. +|.|+|||+.++.++||+|...+|.|++.+...|+||.+||
T Consensus         5 ~sL~~~~WYhG~IsR~eAE~lL~~~~dG~FLVR~S~s~~~g~y~LSvr~~~~v~H~rI~~~~g~y~l~~~~~F~SL~eLV   84 (373)
T 3hhm_B            5 MSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLTFSSVVELI   84 (373)
T ss_dssp             CGGGGCTTEEESCCHHHHHHHTTTCCTTEEEEEECSCC--CCEEEEEEETTEEEEEEECCSSSCBCSSSSCCBSSSHHHH
T ss_pred             CCcccCCccCCCCCHHHHHHHhcCCCCCCEEEeccCCCCCCCEEEEEEECCeeEEEEEEecCCeEEeCCCCCcCCHHHHH
Confidence            56788999999999999999999889999999999998 89999999999999999999888999998888999999999


Q ss_pred             HHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCC--C-------ccccccc---ccCccc-----------
Q psy8552         289 NYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNP--A-------PGVLRTF---SEPFKF-----------  345 (523)
Q Consensus       289 ~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~--l-------~~~~~~~---~~~~~~-----------  345 (523)
                      +||+.+++..+++++++.|+.||++.+.....  ..++...+.  +       ....++|   .++|+.           
T Consensus        85 ~~Y~~~~l~~~~~gl~~~L~~Pv~r~~qd~~v--~~~~~e~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a  162 (373)
T 3hhm_B           85 NHYRNESLAQYNPKLDVKLLYPVSKYQQDQVV--KEDNIEAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTA  162 (373)
T ss_dssp             HHHHHSCGGGSCTTCCCCCCEECCSCCC-CCC--SCC--CGGGC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhCCccccCCCCCcccCCCCCCcchhhcc--ccccHHHHHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHH
Confidence            99999999877889999999999997776554  344444322  1       1122222   444553           


Q ss_pred             -hhHHHHHHhhccc----------------------------------------------chhh-------hhhhhchhc
Q psy8552         346 -TSVVELINYYKHE----------------------------------------------SLSQ-------YNSTLDTRL  371 (523)
Q Consensus       346 -~~~~~avk~~~~~----------------------------------------------~l~~-------~~~e~~ar~  371 (523)
                       ++|.+|+|+++.+                                              .|++       ..+++| |.
T Consensus       163 ~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~  241 (373)
T 3hhm_B          163 IEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREID-KR  241 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence             6888888877510                                              1111       355676 88


Q ss_pred             ccccccccccc--ccccccchhHH------Hhhhhh-----cccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCC
Q psy8552         372 LYPVSRFSSDV--DADIHSNDVDK------YINLKI-----AFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGR  437 (523)
Q Consensus       372 m~~l~~~~~~l--~k~~~~~w~~~------r~~~~~-----~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~  437 (523)
                      |.+++|+++++  .++++..|+..      +++.++     .++|.........+ .++.++||| .|+|.+||.+|.+.
T Consensus       242 ~~~lkp~l~ql~k~rd~~~~~L~~~g~~~~~i~~~L~~~~~~~~~~~~e~~~~~~-~~~~~~WyhG~isR~~AE~LL~~~  320 (373)
T 3hhm_B          242 MNSIKPDLIQLRKTRDQYLMWLTQKGVRQKKLNEWLGNENTEDQYSLVEDDEDLP-HHDEKTWNVGSSNRNKAENLLRGK  320 (373)
T ss_dssp             HHHHHHHHHHHHHHHTC---------------------------------------------------------------
T ss_pred             hhccChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCCCCCcccccccccccc-cccCCCCcCCCCCHHHHHHHhccC
Confidence            99999999999  67999999884      233332     34555444444555 688899999 99999999999888


Q ss_pred             CCCeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHH
Q psy8552         438 PDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGAL  489 (523)
Q Consensus       438 ~~G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~L  489 (523)
                      ++|+||||.|. +|.|+||+++++.|+||+|...++|+++.+....|+||.+|
T Consensus       321 ~~G~FLVR~Ss~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~SL~eL  373 (373)
T 3hhm_B          321 RDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLKEL  373 (373)
T ss_dssp             -----------------------------------------------------
T ss_pred             CCCcEEEEecCCCCCEEEEEEECCeEEEEEEEEcCCCcEEeCCCCCCCChhhC
Confidence            89999999999 99999999999999999999998888887766799999986

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A

Probab=100.00  E-value=5.2e-42  Score=334.51  Aligned_cols=241  Identities=23%  Similarity=0.306  Sum_probs=184.6

Q ss_pred             CCCCCCccccCCCHHHHHHHhc--CCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHHH
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLA--DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVEL  287 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~--~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~L  287 (523)
                      .++.++||||.|+|++||++|+  +.++|+||||+|++.+|.|+||++.++.++||+|.. .+|.|++.+...|+||.+|
T Consensus         2 ~~~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~L   81 (254)
T 2oq1_A            2 PAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAEL   81 (254)
T ss_dssp             TTTTCTTBCBSCCHHHHHHHHHHTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHH
T ss_pred             ccccCCccCCCCCHHHHHHHHhccCCCCcEEEEEeCCCCCCCEEEEEEECCeEEEEEEEEeCCCCEEeCCCCccCCHHHH
Confidence            3567899999999999999995  468999999999998899999999999999999998 6888999878999999999


Q ss_pred             HHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhhcccchhhhhhhh
Q psy8552         288 INYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTL  367 (523)
Q Consensus       288 V~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~~~~~l~~~~~e~  367 (523)
                      |+||+.++.     ++++.|+.||++.......               .    +.|.         .+..+.+.++++  
T Consensus        82 V~~y~~~~~-----~l~~~L~~p~~~~~~~~~~---------------~----~~f~---------~i~~~~l~~~v~--  126 (254)
T 2oq1_A           82 CEFYSRDPD-----GLPCNLRKPCNRPSGLEPQ---------------P----GVFD---------CLRDAMVRDYVR--  126 (254)
T ss_dssp             HHHHHHCCT-----TSSSCCCSBCCCCTTCCCB---------------C----CHHH---------HHHHHHHHHHHH--
T ss_pred             HHHHHhCCC-----CcccccccccCCCCCCCCC---------------c----cccc---------chhHHHHHHHHH--
Confidence            999999874     7899999999975432221               0    0000         001111111111  


Q ss_pred             chhccccccccccccccccccchhHHHhhhhhccccccc-c----cCCCCCCCCCCCcccc-cCCHHHHHHHhcCC--CC
Q psy8552         368 DTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSG-A----VASTVDFESGEKTWLV-RMSRAQAEALLSGR--PD  439 (523)
Q Consensus       368 ~ar~m~~l~~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~-~----~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~--~~  439 (523)
                                           .||..+. .+.+.+.+.. +    ..+. . .++.++||| .|+|++||++|...  .+
T Consensus       127 ---------------------~~w~~~~-~~~~~~~~~~~p~~~~~~~~-~-~l~~~~Wyhg~isR~~Ae~lL~~~g~~~  182 (254)
T 2oq1_A          127 ---------------------QTWKLEG-EALEQAIISQAPQVEKLIAT-T-AHERMPWYHSSLTREEAERKLYSGAQTD  182 (254)
T ss_dssp             ---------------------HHHCCCH-HHHHHHHHHHHHHHHHHHHH-H-GGGGSTTBCSSCCHHHHHHHHHSSCCCT
T ss_pred             ---------------------HHHhhcc-hhhhhhhccCCccccccccc-c-ccCCCcccccCCCHHHHHHHHHhcCCCC
Confidence                                 1222110 0011111100 0    0001 1 477889999 99999999999754  79


Q ss_pred             CeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccC
Q psy8552         440 GTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       440 G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      |+||||.|+ +|.|+||++.+++|+||+|....+|.++......|+||.+||+||++++     +|++++|++||++
T Consensus       183 G~FLVR~S~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~y~~~~-----~~l~~~L~~p~~r  254 (254)
T 2oq1_A          183 GKFLLRPRKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKA-----DGLIYCLKEACPN  254 (254)
T ss_dssp             TEEEEEECSSTTEEEEEEEETTEEEEEEEEECTTSCEESTTSCCBSSHHHHHHHHHHCC-----TTSSSCCCSBCCC
T ss_pred             ceEEEEecCCCCCEEEEEEECCeEEEEEEEEcCCCCEEECCCceECCHHHHHHHHHhCC-----CCCCeeCCccCcC
Confidence            999999998 9999999999999999999998777777665689999999999999997     8999999999975

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A*

Probab=100.00  E-value=3.6e-42  Score=335.61  Aligned_cols=241  Identities=23%  Similarity=0.353  Sum_probs=182.9

Q ss_pred             CCCCCccccCCCHHHHHHHhc--CCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHHHH
Q psy8552         212 LRDAEWYWGDISRDDVNDKLA--DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVELI  288 (523)
Q Consensus       212 l~~~~wyhg~isr~~Ae~lL~--~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~LV  288 (523)
                      .+.++||||.|+|++||++|.  +.++|+||||+|++.+|.|+||++.++.++||+|.. .+|.|++.++..|+||.+||
T Consensus         2 ~~~~~Wy~g~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLv   81 (254)
T 1a81_A            2 ANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADLC   81 (254)
T ss_dssp             TTSSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHH
T ss_pred             CccCccccCCCCHHHHHHHHhcCCCCCcEEEEEecCCCCCCEEEEEEECCeeEEEEEEEcCCCCEEeCCCCCcCCHHHHH
Confidence            457899999999999999995  358999999999998999999999999999999998 68889998889999999999


Q ss_pred             HHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhhcccchhhhhhhhc
Q psy8552         289 NYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLD  368 (523)
Q Consensus       289 ~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~~~~~l~~~~~e~~  368 (523)
                      +||+.++.     ++++.|+.||.+.......  .                 +.|..      +   +.+.+.++++.  
T Consensus        82 ~~y~~~~~-----~l~~~L~~p~~~~~~~~~~--~-----------------~~~~~------i---~~~~l~~~v~~--  126 (254)
T 1a81_A           82 HYHSQESD-----GLVCLLKKPFNRPQGVQPK--T-----------------GPFED------L---KENLIREYVKQ--  126 (254)
T ss_dssp             HHHTTCCT-----TSSSCCCEECCCCSSCCCC--C-----------------CSSHH------H---HHHHHHHHHHH--
T ss_pred             HHHHhCCC-----CceECCccccCCCCCCCCc--c-----------------chhcc------h---HHHHHHHHHHH--
Confidence            99999874     7899999999985432211  0                 00000      0   00001011100  


Q ss_pred             hhccccccccccccccccccchhHHHhhhhhccccc---cc--ccCCCCCCCCCCCcccc-cCCHHHHHHHhcCC--CCC
Q psy8552         369 TRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNL---SG--AVASTVDFESGEKTWLV-RMSRAQAEALLSGR--PDG  440 (523)
Q Consensus       369 ar~m~~l~~~~~~l~k~~~~~w~~~r~~~~~~~g~~---p~--~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~--~~G  440 (523)
                                           +|..+. ..++++.+   |.  ...+. . .++.++||| .|+|++||++|...  ++|
T Consensus       127 ---------------------~w~~~~-~~l~~~~~~~~p~~~~~~~~-~-~~~~~~Wyhg~isR~~Ae~lL~~~g~~~G  182 (254)
T 1a81_A          127 ---------------------TWNLQG-QALEQAIISQKPQLEKLIAT-T-AHEKMPWFHGKISREESEQIVLIGSKTNG  182 (254)
T ss_dssp             ---------------------HTCCCH-HHHHHHHHHHHHHHHHHHHH-T-SGGGSTTEEEECCHHHHHHHHHSSCCCTT
T ss_pred             ---------------------HHHhcc-chhhhhcccCCchhhhcccc-c-ccccCCccccCCCHHHHHHHHHhcCCCCc
Confidence                                 111000 00000000   00  00011 1 478889999 99999999999754  799


Q ss_pred             eEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552         441 TFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       441 ~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      +||||.|+ +|.|+||++.+++|+||+|....+|.++......|+||.+||+||++++     +|++++|++||++.
T Consensus       183 ~FLVR~S~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~-----~~l~~~L~~p~~r~  254 (254)
T 1a81_A          183 KFLIRARDNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHYSYKA-----DGLLRVLTVPCQKI  254 (254)
T ss_dssp             CEEEEECSSSSCEEEEEEETTEEEEEEEEECTTSCEECTTSCCBSCHHHHHHHHTTCC-----TTSSSCCCCBCCCC
T ss_pred             eEEEEecCCCCCEEEEEEECCEEEEEEEEEcCCCCEEecCCcccCCHHHHHHHHHHCC-----CCCCeecCCcCCCC
Confidence            99999998 9999999999999999999998777777655689999999999999997     89999999999863

>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*

Probab=100.00  E-value=1.5e-40  Score=321.37  Aligned_cols=195  Identities=30%  Similarity=0.534  Sum_probs=163.5

Q ss_pred             CCCCccccCC-----CHHHHHHHhc------CCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeC-C---eEEeCC
Q psy8552         213 RDAEWYWGDI-----SRDDVNDKLA------DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRN-G---RYGFSE  277 (523)
Q Consensus       213 ~~~~wyhg~i-----sr~~Ae~lL~------~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~-~---~~~~~~  277 (523)
                      .+++||||.|     +|++||++|+      +.++|+||||+|++.+|+|+||++.+++++||+|...+ +   .|++.+
T Consensus         2 ~~e~WfhG~i~~~~~sR~~AE~lL~~~~~~~~~~dG~FLVR~S~s~~G~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~   81 (246)
T 4fbn_A            2 SNEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTD   81 (246)
T ss_dssp             -CCTTBCCCCSCC-CHHHHHHHHHHHHHHHHTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEECGGGCCEEEEET
T ss_pred             CCCCCcCCccccccCCHHHHHHHHHHhhhccCCCCCEEEEEcCCCCCCCEEEEEEECCEEEEEEEEEECCCCceeEEecC
Confidence            4689999999     7999999996      46899999999999999999999999999999998633 2   588888


Q ss_pred             CCccCCHHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhhcc
Q psy8552         278 PFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKH  357 (523)
Q Consensus       278 ~~~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~~~  357 (523)
                      +..|+||.+||+||+.+++..  .++...|..|++.                                            
T Consensus        82 ~~~F~sl~~LV~~y~~~~l~~--~~~~~~l~~p~p~--------------------------------------------  115 (246)
T 4fbn_A           82 NLVFDSLYDLITHYQQVPLRC--NEFEMRLSEPVPQ--------------------------------------------  115 (246)
T ss_dssp             TEEESSHHHHHHHHHHSCEEC--SSCEECCCCBCCC--------------------------------------------
T ss_pred             CcccCCHHHHHHhHhhccccc--ccccccccccccc--------------------------------------------
Confidence            899999999999999988642  2344444444332                                            


Q ss_pred             cchhhhhhhhchhccccccccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcC
Q psy8552         358 ESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSG  436 (523)
Q Consensus       358 ~~l~~~~~e~~ar~m~~l~~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~  436 (523)
                                                                           .  ..++.++||| .|+|.+||.+|.+
T Consensus       116 -----------------------------------------------------~--~~~~~~~Wyhg~isr~~Ae~lL~~  140 (246)
T 4fbn_A          116 -----------------------------------------------------T--NAHESKEWYHASLTRAQAEHMLMR  140 (246)
T ss_dssp             -----------------------------------------------------S--CGGGGSTTEESSCCHHHHHHHHHT
T ss_pred             -----------------------------------------------------c--CCcccCCeeecCccHHHHHHHHhh
Confidence                                                                 0  0356789999 9999999999987


Q ss_pred             CC-CCeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeeccccc
Q psy8552         437 RP-DGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVF  514 (523)
Q Consensus       437 ~~-~G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~  514 (523)
                      .+ +|+||||.|+ +|.|+||++.+++|+||+|...++.+.+ + ...|+||.+||+||++++     .++.++|++||+
T Consensus       141 ~~~~G~FLVR~s~~~g~y~Lsv~~~~~v~H~~I~~~~~~~~~-~-~~~F~sL~~Lv~~y~~~p-----~~~~~~L~~Pv~  213 (246)
T 4fbn_A          141 VPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQEGQTVML-G-NSEFDSLVDLISYYEKHP-----LYRKMKLRYPIN  213 (246)
T ss_dssp             SCCTTEEEEEECSSTTEEEEEEEETTEEEEEEEEEETTEEEE-T-TEEESCHHHHHHHHHHSC-----SBTTBCCCEECS
T ss_pred             CCCCCeEEEEecCCCCCEEEEEEeCCCeEEEEEEeCCCEEEe-C-CCccCCHHHHHHHhCcCC-----CCCCcCCCCcCC
Confidence            65 8999999999 9999999999999999999987654444 4 368999999999999998     567999999997


Q ss_pred             C
Q psy8552         515 A  515 (523)
Q Consensus       515 ~  515 (523)
                      +
T Consensus       214 ~  214 (246)
T 4fbn_A          214 E  214 (246)
T ss_dssp             H
T ss_pred             C
Confidence            5

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=3.5e-39  Score=354.95  Aligned_cols=246  Identities=23%  Similarity=0.345  Sum_probs=186.5

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEe-CCeEEeCCCCccCCHH
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NGRYGFSEPFKFTSVV  285 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~-~~~~~~~~~~~F~sl~  285 (523)
                      .++++.++||||.|+|++||++|..  .++|+||||+|++.+|.|+||++.+++++||+|.+. +|.|++.+...|.||.
T Consensus         7 ~~~l~~~~Wy~g~isr~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~v~h~~i~~~~~g~~~~~~~~~f~sl~   86 (635)
T 4fl3_A            7 ADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPA   86 (635)
T ss_dssp             --CCTTCTTBCBSCCHHHHHHHHHHTTCCTTEEEEEECTTSSSCEEEEEEETTEEEEEEEEECTTSCEESTTCCCBSSHH
T ss_pred             cchhhcCCccCCCCCHHHHHHHHhcCCCCCceEEEeecccCCCCEEEEEEeCCEEEeEEEEEcCCCCEEeCCCCccCCHH
Confidence            4568899999999999999999975  579999999999999999999999999999999975 7889998889999999


Q ss_pred             HHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhhc-c--cchhh
Q psy8552         286 ELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYK-H--ESLSQ  362 (523)
Q Consensus       286 ~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~~-~--~~l~~  362 (523)
                      +||+||+.++.     ++++.|++||.+.....+.+   ....      ...  .     ..+.+.++... .  ..+++
T Consensus        87 ~Lv~~y~~~~~-----~l~~~L~~p~~~~~~~~~~~---~~~~------~~~--~-----~~~~e~~~~~~~~~~~~~e~  145 (635)
T 4fl3_A           87 DLCHYHSQESD-----GLVCLLKKPFNRPQGVQPKT---GPFE------DLK--E-----NLIREYVKQTWNLQGQALEQ  145 (635)
T ss_dssp             HHHHHHTTCCT-----TSSSCCCEECCCCTTCCCBC---SHHH------HHH--H-----HHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHhhCCC-----CCeeccCCcCCCccCCCCCC---CCcc------hhh--h-----HHHHHHHHHHHhcccchhhh
Confidence            99999999884     88999999999865433320   0000      000  0     00111111000 0  00001


Q ss_pred             hhhhhchhccccccccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcC--CCC
Q psy8552         363 YNSTLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSG--RPD  439 (523)
Q Consensus       363 ~~~e~~ar~m~~l~~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~--~~~  439 (523)
                      .+..        ..+...                          ...+..  .++.++||| .|+|.+||++|..  +.+
T Consensus       146 ~i~~--------~~~~~~--------------------------~~~~~~--~~~~~~Wy~g~isr~~ae~~L~~~~~~~  189 (635)
T 4fl3_A          146 AIIS--------QKPQLE--------------------------KLIATT--AHEKMPWFHGKISREESEQIVLIGSKTN  189 (635)
T ss_dssp             HHHH--------HHHHHH--------------------------HHHTTS--CGGGSTTBCCSCCHHHHHHHHHSSSCCT
T ss_pred             hccC--------CCchhh--------------------------hhhccc--ccccCCceeccCCHHHHHHHHHcCCCCC
Confidence            0000        000000                          001111  578899999 9999999999975  359


Q ss_pred             CeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552         440 GTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       440 G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      |+||||.|+ +|.|+||++.+++|+||+|.+..+|.++......|+||.+||+||++++     +|++++|++||.+.
T Consensus       190 G~FLvR~s~~~g~y~lsv~~~~~v~h~~i~~~~~g~~~~~~~~~F~sl~~Lv~~y~~~~-----~~l~~~L~~p~~~~  262 (635)
T 4fl3_A          190 GKFLIRARDNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHYSYKA-----DGLLRVLTVPCQKI  262 (635)
T ss_dssp             TCEEEEESSSSSCEEEEEEETTEEEEEEEEECTTSCEESTTCCCBSSHHHHHHHHTTCC-----TTSSSCCCSBCCC-
T ss_pred             ceEEEEecCCCCCEEEEEEECCEEEEEEEEECCCCCEEeCCCCccCCHHHHHHHhhhCC-----CCCccccCccCcCc
Confidence            999999999 9999999999999999999988888778777689999999999999996     99999999999875

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=9.3e-38  Score=342.53  Aligned_cols=243  Identities=23%  Similarity=0.311  Sum_probs=183.0

Q ss_pred             CCCCCCccccCCCHHHHHHHhc--CCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHHH
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLA--DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVEL  287 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~--~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~L  287 (523)
                      ..+.++||||.|+|++||++|.  +.++|+||||+|++.+|.|+||++.+++++||+|.+ .+|.|++.+...|.||.+|
T Consensus         4 ~~~~~~W~~g~i~r~~ae~~L~~~~~~~G~fLvR~s~~~~g~~~ls~~~~~~~~h~~i~~~~~g~~~~~~~~~f~sl~~L   83 (613)
T 2ozo_A            4 PAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAEL   83 (613)
T ss_dssp             TTSSCTTBCBSCCHHHHHHHHHTTTCCTTEEEEEECTTBTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHH
T ss_pred             CCCCCCCcCccCCHHHHHHHHhccCCCCCeEEEEecCCCCCCEEEEEEECCeEEEEEEEECCCCcEEECCCCCcCCHHHH
Confidence            4567899999999999999994  467899999999999999999999999999999997 5788999888999999999


Q ss_pred             HHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhhcccchhhhhh--
Q psy8552         288 INYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNS--  365 (523)
Q Consensus       288 V~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~~~~~l~~~~~--  365 (523)
                      |+||+.++.     ++++.|+.||+++....+.+               .    .|     ....+.+..+.+.+.++  
T Consensus        84 v~~y~~~~~-----~l~~~L~~p~~~~~~~~~~~---------------~----~~-----~~~~~~l~~~~~~~~we~~  134 (613)
T 2ozo_A           84 CEFYSRDPD-----GLPCNLRKPCNRPSGLEPQP---------------G----VF-----DCLRDAMVRDYVRQTWKLE  134 (613)
T ss_dssp             HHHHTSCCT-----TSSSCCCSBCCCCTTCCCBC---------------C----HH-----HHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHhhCCC-----CCCccCCccCCCCCCCCCCc---------------c----ch-----hHHHHHHHHHHHHHHhhcC
Confidence            999999885     78999999999854322210               0    00     00000000000000000  


Q ss_pred             --hhchhccccccccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhc--CCCCC
Q psy8552         366 --TLDTRLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLS--GRPDG  440 (523)
Q Consensus       366 --e~~ar~m~~l~~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~--~~~~G  440 (523)
                        +.+ ..+....|+.-                          ...+. . .++.++||| .|+|++||.+|.  ++.+|
T Consensus       135 ~~~l~-~~~~~~~p~~~--------------------------~~~~~-~-~~~~~~wyhg~i~r~~ae~~L~~~~~~~G  185 (613)
T 2ozo_A          135 GEALE-QAIISQAPQVE--------------------------KLIAT-T-AHERMPWYHSSLTREEAERKLYSGAQTDG  185 (613)
T ss_dssp             HHHHH-HHHHHHHHHHH--------------------------HHHTT-S-CTTTSTTBCTTCCHHHHHHHHSSSCCCTT
T ss_pred             chHHH-HHhhcCCCchh--------------------------hcccc-c-ccccCCccccCCCHHHHHHHHhhcCCCCc
Confidence              000 00000000000                          00011 1 578899999 999999999997  45799


Q ss_pred             eEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552         441 TFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       441 ~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      +||||.|+ +|.|+||++.+++|+||+|.+..+|.++......|+||.+||+||+.++     +|++++|++||...
T Consensus       186 ~FLvR~s~~~~~~~lsv~~~~~v~h~~I~~~~~g~~~~~~~~~F~sl~~Lv~~y~~~~-----~~l~~~L~~pC~~~  257 (613)
T 2ozo_A          186 KFLLRPRKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKA-----DGLIYCLKEACPNS  257 (613)
T ss_dssp             CEEEEECSSTTEEEEEEEETTEEEEEEEEECTTCCEECTTSCEESSHHHHHHHHHHCC-----TTCSSCCCSBCCC-
T ss_pred             eEEEEecCCCCCEEEEEEECCeEEEEEEEECCCCCEEECCCCCcCCHHHHHHHHhhCC-----CCceeccccccccc
Confidence            99999999 9999999999999999999998777777665689999999999999986     89999999999763

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=323.03  Aligned_cols=199  Identities=27%  Similarity=0.453  Sum_probs=170.9

Q ss_pred             CCccccCCCHHHHHHHhcCC-CCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHHHHhh
Q psy8552         215 AEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKH  293 (523)
Q Consensus       215 ~~wyhg~isr~~Ae~lL~~~-~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~y~~  293 (523)
                      ++||||.|+|++||++|... ++|+||||+|++.+|.|+||++.++.++||+|...++.|++.+...|+||.+||+||+.
T Consensus         2 ~~Wy~g~isr~~Ae~lL~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~eLv~~y~~   81 (595)
T 3ps5_A            2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQ   81 (595)
T ss_dssp             CSCCCSSCCHHHHHHHHHHHCCTTCEEEEECSSSTTSEEEEEEETTEEEEEEEEECSSCEESSSSCCBSSHHHHHHHHHT
T ss_pred             CCccCCCCCHHHHHHHHhhCCCCCEEEEeecCCCCCceEEEEEECCEEEEEEEEeCCCcEEEecCccccchhhhhhhhcc
Confidence            68999999999999999853 79999999999999999999999999999999988889999888999999999999999


Q ss_pred             CCcccC-CCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhhcccchhhhhhhhchhcc
Q psy8552         294 ESLSQY-NSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLL  372 (523)
Q Consensus       294 ~~~~~~-~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~~~~~l~~~~~e~~ar~m  372 (523)
                      +++... .+++.+.|..|+.+.                                                          
T Consensus        82 ~~~~l~~~~g~~i~L~~P~~~~----------------------------------------------------------  103 (595)
T 3ps5_A           82 QQGVLQDRDGTIIHLKYPLNCS----------------------------------------------------------  103 (595)
T ss_dssp             TSSCCBCSSCCBCCCCCBCCCC----------------------------------------------------------
T ss_pred             Cccccccccccccccccccccc----------------------------------------------------------
Confidence            875442 235556666665431                                                          


Q ss_pred             ccccccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCC-CCCeEEeecCC--
Q psy8552         373 YPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPST--  448 (523)
Q Consensus       373 ~~l~~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~-~~G~FLvR~s~--  448 (523)
                                                                ....++||| .|+|++||.+|... .+|+||||+|+  
T Consensus       104 ------------------------------------------~p~~~~Wy~g~~~r~eAe~lL~~~~~~G~FLVR~S~~~  141 (595)
T 3ps5_A          104 ------------------------------------------DPTSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQ  141 (595)
T ss_dssp             ------------------------------------------CSCCSTTEEESCCHHHHHHHHHHHCCTTEEEEEECSSS
T ss_pred             ------------------------------------------cccccccccccCCHHHHHHHHhccCCCceEEEEecCCC
Confidence                                                      234568999 99999999999644 48999999997  


Q ss_pred             CCceEEEEEECC---------eeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccC
Q psy8552         449 TGQYALSIVCSG---------APKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       449 ~~~~~Ls~~~~~---------~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      +|.|+||++.++         +|+||+|...+++|++.+ ...|+||.+||+||++++++. .+|+.+.|++||..
T Consensus       142 ~g~y~LSv~~~~~~~~~~~~~~v~H~~I~~~~~~~~~~~-~~~F~sl~~LV~~y~~~~l~~-~~g~~~~L~~p~~~  215 (595)
T 3ps5_A          142 PGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGG-LETFDSLTDLVEHFKKTGIEE-ASGAFVYLRQPYYA  215 (595)
T ss_dssp             TTCEEEEEEEEEESSSTTSCEEEEEEEEBCGGGCBBSSS-SCCBSSHHHHHHHHHHSCBCC-TTSCCBCCCEECCC
T ss_pred             CCcEEEEEEECCccccccCCCceEEEEEEEeCCEEEEcC-CcCCCCHHHHHHHHhcCCccc-cCCcEEEeeccccc
Confidence            999999999987         899999988665565544 579999999999999999987 48999999999965

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1

Probab=100.00  E-value=1.5e-34  Score=310.71  Aligned_cols=203  Identities=26%  Similarity=0.446  Sum_probs=173.2

Q ss_pred             CCCCCccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHHH
Q psy8552         212 LRDAEWYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINY  290 (523)
Q Consensus       212 l~~~~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~  290 (523)
                      ++.++||||.|+|++||++|.. .++|+||||+|++.+|.|+||++.++.++||+|...++.|++.+...|+||.+||+|
T Consensus         1 l~~~~Wyhg~i~r~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~~~l~~~~~F~sl~eLv~~   80 (525)
T 2shp_A            1 MKSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQY   80 (525)
T ss_dssp             -CCSTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEECSSSCEEETTSCEESSHHHHHHH
T ss_pred             CCCCCcccCCCCHHHHHHHHHhCCCCCcEEeeccCCCCCcEEEEEEECCEEEEEEEEecCCeEEECCCCeECCHHHHHHH
Confidence            4578999999999999999975 479999999999989999999999999999999887888989888999999999999


Q ss_pred             HhhCCccc-CCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhhcccchhhhhhhhch
Q psy8552         291 YKHESLSQ-YNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDT  369 (523)
Q Consensus       291 y~~~~~~~-~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~~~~~l~~~~~e~~a  369 (523)
                      |+.++... ..+++.+.|+.|+++.                                                       
T Consensus        81 y~~~~~~l~~~~g~~i~L~~Pv~~~-------------------------------------------------------  105 (525)
T 2shp_A           81 YMEHHGQLKEKNGDVIELKYPLNCA-------------------------------------------------------  105 (525)
T ss_dssp             HHTCTTCSBSSSSCBCCCCEECCCC-------------------------------------------------------
T ss_pred             HHhCCcccccccccccccccccccc-------------------------------------------------------
Confidence            99887543 1235566666666531                                                       


Q ss_pred             hccccccccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCC-CCCeEEeecC
Q psy8552         370 RLLYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPS  447 (523)
Q Consensus       370 r~m~~l~~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~-~~G~FLvR~s  447 (523)
                                                                   +...++||| .|+|.+||.+|.+. ++|+||||.|
T Consensus       106 ---------------------------------------------dp~~~~w~~g~~~r~~Ae~lL~~~~~~G~FLVR~S  140 (525)
T 2shp_A          106 ---------------------------------------------DPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRES  140 (525)
T ss_dssp             ---------------------------------------------CCTTCTTBCCSCCHHHHHHHHHHTCCTTEEEEEEC
T ss_pred             ---------------------------------------------ccccceeecccCCHHHHHHHHhccCCCceEEEEec
Confidence                                                         123458999 99999999999765 7999999999


Q ss_pred             C--CCceEEEEEECC----------eeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccC
Q psy8552         448 T--TGQYALSIVCSG----------APKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       448 ~--~~~~~Ls~~~~~----------~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      +  +|.|+||++.++          .++||+|...+++|++ +....|+||.+||+||+++++.. ..|+.+.|++||.+
T Consensus       141 ~~~~g~y~LSv~~~~~~~~~~~~~~~v~H~~I~~~~g~~~l-~~~~~F~sL~eLV~~y~~~~l~~-~~g~~~~L~~P~~~  218 (525)
T 2shp_A          141 QSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDV-GGGERFDSLTDLVEHYKKNPMVE-TLGTVLQLKQPLNT  218 (525)
T ss_dssp             SSSTTCEEEEEEECC-----CCCCCEEEEEEEEEETTEEES-SSSCCBSSHHHHHHHHHHSCCBC-TTSCBCCCCEECCC
T ss_pred             CCCCCCEEEEEEECCccccccccccceEEEEEEecCCeEEE-CCCceeCcHHHHHHhhhccCccc-cCCeEEEeeccccc
Confidence            8  899999999987          8999999988655544 44579999999999999999876 47899999999987


Q ss_pred             C
Q psy8552         516 P  516 (523)
Q Consensus       516 ~  516 (523)
                      .
T Consensus       219 t  219 (525)
T 2shp_A          219 T  219 (525)
T ss_dssp             S
T ss_pred             c
Confidence            5

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*

Probab=100.00  E-value=1.3e-34  Score=311.65  Aligned_cols=201  Identities=26%  Similarity=0.444  Sum_probs=171.9

Q ss_pred             CCccccCCCHHHHHHHhcCC-CCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHHHHhh
Q psy8552         215 AEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYKH  293 (523)
Q Consensus       215 ~~wyhg~isr~~Ae~lL~~~-~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~y~~  293 (523)
                      ++||||.|+|++||++|... ++|+||||+|++.+|.|+||++.+++++||+|...+|.|.+.+...|+||.+||+||+.
T Consensus         2 ~~Wyhg~i~r~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~Lv~~y~~   81 (532)
T 2b3o_A            2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQ   81 (532)
T ss_dssp             CTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSSSEEEEEEEETTEEEEEEEECSSSCEEETTSCEESCHHHHHHHHHT
T ss_pred             CCceeCCCCHHHHHHHHHhcCCCCCEEEecCCCCCCceEEEEEECCEEEEEEEEecCCEEEECCCcccCCHHHHHHHHHh
Confidence            68999999999999999864 79999999999889999999999999999999987778888777899999999999999


Q ss_pred             CCcccC-CCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhhcccchhhhhhhhchhcc
Q psy8552         294 ESLSQY-NSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLL  372 (523)
Q Consensus       294 ~~~~~~-~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~~~~~l~~~~~e~~ar~m  372 (523)
                      ++.... .+++.+.|+.|+++.                                                          
T Consensus        82 ~~~~l~~~~g~~~~L~~P~~~~----------------------------------------------------------  103 (532)
T 2b3o_A           82 QQGVLQDRDGTIIHLKYPLNCS----------------------------------------------------------  103 (532)
T ss_dssp             TCSCBCCSSSCCBCCCEECCCC----------------------------------------------------------
T ss_pred             cccccccccCchhhcccccccc----------------------------------------------------------
Confidence            874332 257778888887641                                                          


Q ss_pred             ccccccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCC-CCCeEEeecCC--
Q psy8552         373 YPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPST--  448 (523)
Q Consensus       373 ~~l~~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~-~~G~FLvR~s~--  448 (523)
                                                                +.+.++||| .|+|.+||.+|... .+|+||||.|+  
T Consensus       104 ------------------------------------------~p~~~~w~~g~i~r~~Ae~lL~~~~~~G~FLVR~S~~~  141 (532)
T 2b3o_A          104 ------------------------------------------DPTSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQ  141 (532)
T ss_dssp             ------------------------------------------CGGGCTTBCTTCCHHHHHHHHHHHCCTTEEEEEECSSS
T ss_pred             ------------------------------------------ccccccccccccchHHHHHHHhcCCCCceEEEecCCCC
Confidence                                                      123458999 99999999999643 68999999997  


Q ss_pred             CCceEEEEEECC---------eeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCCC
Q psy8552         449 TGQYALSIVCSG---------APKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA  517 (523)
Q Consensus       449 ~~~~~Ls~~~~~---------~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~  517 (523)
                      +|.|+||++.++         .++||+|...++++++ +....|+||.+||+||+++++.. ..|+++.|++||.+..
T Consensus       142 ~g~y~Lsv~~~~~~~~~~~~~~v~h~~I~~~~g~~~l-~~~~~F~sl~eLV~~y~~~~l~~-~~g~~~~L~~P~~~t~  217 (532)
T 2b3o_A          142 PGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTV-GGLETFDSLTDLVEHFKKTGIEE-ASGAFVYLRQPYYATR  217 (532)
T ss_dssp             TTCEEEEEEEEEEC----CCEEEEEEEEBCCTTSBBS-SSSCCBSSHHHHHHHHHHHCEEC-SSSCEECCCEECCCCC
T ss_pred             CCceEEEEEecCccccccCCCceEEEEEEEcCCceee-CCCcccCcHHHHHhhccccCccc-cCCeeEeccccccccc
Confidence            899999999877         8999999987655554 44579999999999999998765 4789999999998753

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}

Probab=99.97  E-value=2e-31  Score=250.49  Aligned_cols=159  Identities=20%  Similarity=0.296  Sum_probs=141.3

Q ss_pred             CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCC-CHHHHHHHH
Q psy8552           6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKL-EPALLAIML   83 (523)
Q Consensus         6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~-d~~~va~lL   83 (523)
                      +..|.+.+..++..||.+|.+|+++|+++     |+++|||||++|+ ++|++|++.||+|....++..+ |+|+||++|
T Consensus         3 ~g~L~~~~~~~~~~vP~iv~~~i~~l~~~-----gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lL   77 (201)
T 2ovj_A            3 EGMLADFVSQTSPMIPSIVVHCVNEIEQR-----GLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLL   77 (201)
T ss_dssp             CCCGGGGCCSSSSCCCHHHHHHHHHHHHH-----TTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHH
T ss_pred             CCcHHHHhcccCCCCChHHHHHHHHHHHh-----CCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHH
Confidence            45688888899999999999999999999     8999999999955 9999999999998754456666 999999999


Q ss_pred             HHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhh
Q psy8552          84 KTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQS  163 (523)
Q Consensus        84 K~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~  163 (523)
                      |.|||+||+||||+++|+.|+++.+..+.++++.+++.++.+||+.|+.+|+||+.||.+|+++ +.|+|+  ..++|.+
T Consensus        78 K~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~--~~NLa~v  154 (201)
T 2ovj_A           78 KDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMD--VANLAKV  154 (201)
T ss_dssp             HHHHHTSSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCC--HHHHHHH
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCC--HHHHHHH
Confidence            9999999999999999999999999989999999999999999999999999999999999985 456554  5577888


Q ss_pred             hccccccCCCCC
Q psy8552         164 FTFVLPTFSSPP  175 (523)
Q Consensus       164 ~~~v~P~~~~pp  175 (523)
                      |+   |++..++
T Consensus       155 f~---P~ll~~~  163 (201)
T 2ovj_A          155 FG---PTIVAHA  163 (201)
T ss_dssp             HH---HHHTCCS
T ss_pred             hh---hhhcCCC
Confidence            86   6666543

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1

Probab=99.97  E-value=1e-31  Score=255.46  Aligned_cols=152  Identities=22%  Similarity=0.322  Sum_probs=134.9

Q ss_pred             CCCcccccCC--CCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHH
Q psy8552           6 PNLLNKTDNV--SSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIM   82 (523)
Q Consensus         6 p~~L~~~~~~--~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~l   82 (523)
                      +-+|.+.+..  .+..||.+|.+|++||+++     |+++|||||++|+ +. ++|++.||+|...++++.+|+|+||++
T Consensus         9 Gv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~-----gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~~~~dv~~va~l   82 (216)
T 1pbw_A            9 ALTLPDLAEQFAPPDIAPPLLIKLVEAIEKK-----GLECSTLYRTQSSSNL-AELRQLLDCDTPSVDLEMIDVHVLADA   82 (216)
T ss_dssp             ---CCCHHHHCCTTSCSCHHHHHHHHHHHHH-----HTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCGGGBCHHHHHHH
T ss_pred             CCcHHHHHhccCCCCCcCHHHHHHHHHHHHc-----CCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCccccCHHHHHHH
Confidence            4556666553  4578999999999999999     8999999999965 78 999999999865578888999999999


Q ss_pred             HHHHHhhcCCCCCChhhHHHHHHHhc-CCChHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc
Q psy8552          83 LKTYLKSLTEPLIPYVYYEKFVSLLS-GSNDRHIGSRLFALVQ--DFPAHHFSALRYLMAHLARMCALQYARGVREPPTI  159 (523)
Q Consensus        83 LK~flr~LpePli~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~--~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~  159 (523)
                      ||.|||+||+||||+++|+.|+++.+ ..+.++++++++.++.  +||+.|+.+|+||+.||.+|+++++.|+|+..  +
T Consensus        83 LK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~--N  160 (216)
T 1pbw_A           83 FKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNAR--V  160 (216)
T ss_dssp             HHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH--H
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHH--H
Confidence            99999999999999999999999996 7788899999999999  99999999999999999999999999988766  6


Q ss_pred             hhhhhc
Q psy8552         160 LIQSFT  165 (523)
Q Consensus       160 l~~~~~  165 (523)
                      +|.+|+
T Consensus       161 LAivf~  166 (216)
T 1pbw_A          161 LSEIFS  166 (216)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            777776

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}

Probab=99.97  E-value=1e-31  Score=257.31  Aligned_cols=161  Identities=18%  Similarity=0.189  Sum_probs=144.3

Q ss_pred             CCCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHH
Q psy8552           5 APNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIML   83 (523)
Q Consensus         5 ~p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lL   83 (523)
                      ++-+|...+..++..||.+|.+|++||+++     |+++|||||++|+ ++|++|++.+|.+...++++++|+|+||++|
T Consensus        21 FGv~L~~~~~~~~~~vP~~v~~~i~~l~~~-----gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lL   95 (228)
T 3kuq_A           21 FGVPLTVNVQRTGQPLPQSIQQAMRYLRNH-----CLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAYDVADML   95 (228)
T ss_dssp             TTCCHHHHHHHHSSSSCHHHHHHHHHHHHH-----CTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTTCCHHHHHHHH
T ss_pred             ECCchHHHHHHcCCCCCHHHHHHHHHHHHh-----CCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCcccCCHHHHHHHH
Confidence            455666666677889999999999999999     8999999999955 9999999999987655788889999999999


Q ss_pred             HHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhh
Q psy8552          84 KTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQS  163 (523)
Q Consensus        84 K~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~  163 (523)
                      |.|||+||+||||+++|+.|+++.+..+.++++++++.++..||+.|+.+|+||+.||.+|+++++.|+|+..  ++|.+
T Consensus        96 K~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLAiv  173 (228)
T 3kuq_A           96 KQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPT--NLAVC  173 (228)
T ss_dssp             HHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH--HHHHH
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCchh--HhHHH
Confidence            9999999999999999999999999888889999999999999999999999999999999999999988765  77777


Q ss_pred             hccccccCCCCC
Q psy8552         164 FTFVLPTFSSPP  175 (523)
Q Consensus       164 ~~~v~P~~~~pp  175 (523)
                      |+   |++..++
T Consensus       174 f~---P~Ll~~~  182 (228)
T 3kuq_A          174 LA---PSLFHLN  182 (228)
T ss_dssp             HH---HHHHTCC
T ss_pred             Hh---hhhcCCC
Confidence            86   5555543

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}

Probab=99.97  E-value=2.6e-31  Score=252.40  Aligned_cols=160  Identities=22%  Similarity=0.344  Sum_probs=142.5

Q ss_pred             CCCCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCC---CCHHHH
Q psy8552           4 YAPNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSK---LEPALL   79 (523)
Q Consensus         4 ~~p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~---~d~~~v   79 (523)
                      ..+-+|...+..++..||.+|.+|+++|+++     |+++|||||++|+ ++|++|++.+|+|.. +++++   .|+|+|
T Consensus        19 vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~-----gl~~eGIfR~~G~~~~i~~L~~~~~~~~~-~~~~~~~~~dvh~v   92 (214)
T 3byi_A           19 IFGSHLHKVCERENSTVPWFVKQCIEAVEKR-----GLDVDGIYRVSGNLATIQKLRFIVNQEEK-LNLDDSQWEDIHVV   92 (214)
T ss_dssp             STTSCHHHHHHHHTCSSCHHHHHHHHHHHHH-----TTTSTTTTTSCCCHHHHHHHHHHHHTTCC-CCTTSGGGCSHHHH
T ss_pred             ccCCcHHHHHHHcCCCCChHHHHHHHHHHHh-----CCCCCCccccCCCHHHHHHHHHHHhcCCC-CCCCcccccchHHH
Confidence            3556677777777889999999999999999     8999999999955 999999999999864 56554   499999


Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc
Q psy8552          80 AIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTI  159 (523)
Q Consensus        80 a~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~  159 (523)
                      |++||.|||+||+||||+++|+.|+++.+..+.++++++++.++.+||+.|+.+|+||+.||.+|+++++.|+|+..  +
T Consensus        93 a~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~--N  170 (214)
T 3byi_A           93 TGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQ--S  170 (214)
T ss_dssp             HHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH--H
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCCCCHH--H
Confidence            99999999999999999999999999999889999999999999999999999999999999999999999988755  7


Q ss_pred             hhhhhccccccCCCC
Q psy8552         160 LIQSFTFVLPTFSSP  174 (523)
Q Consensus       160 l~~~~~~v~P~~~~p  174 (523)
                      +|.+|+   |++..+
T Consensus       171 La~vf~---P~Ll~~  182 (214)
T 3byi_A          171 LGIVFG---PTLLRA  182 (214)
T ss_dssp             HHHHHH---HHHHCC
T ss_pred             hHHHhc---cccCCC
Confidence            778886   555544

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.4e-31  Score=252.05  Aligned_cols=162  Identities=23%  Similarity=0.300  Sum_probs=142.6

Q ss_pred             CCCCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCC---CCCHHHH
Q psy8552           4 YAPNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFS---KLEPALL   79 (523)
Q Consensus         4 ~~p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~---~~d~~~v   79 (523)
                      ..+-+|...+...+..||.+|.+|+++|+++     |+++|||||++|+ ++|++|++.||++....+++   ..|+|+|
T Consensus         8 vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~-----gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~v   82 (202)
T 2osa_A            8 VYSCDLTTLVKAHTTKRPMVVDMCIREIESR-----GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINII   82 (202)
T ss_dssp             CTTSCHHHHHHHHTCSSCHHHHHHHHHHHHH-----CTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHH
T ss_pred             ccCCChHHHHHHcCCCCCcHHHHHHHHHHHh-----CCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHH
Confidence            4566777777777788999999999999999     8999999999955 99999999999854334554   2589999


Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc
Q psy8552          80 AIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTI  159 (523)
Q Consensus        80 a~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~  159 (523)
                      |++||.|||+||+||+|+++|+.|+++.+..+.++++++++.++.+||+.|+.+|+||+.||.+|+++++.|+|+..  +
T Consensus        83 a~lLK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~--N  160 (202)
T 2osa_A           83 TGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAE--N  160 (202)
T ss_dssp             HHHHHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH--H
T ss_pred             HHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHH--H
Confidence            99999999999999999999999999999989999999999999999999999999999999999999999987755  7


Q ss_pred             hhhhhccccccCCCCC
Q psy8552         160 LIQSFTFVLPTFSSPP  175 (523)
Q Consensus       160 l~~~~~~v~P~~~~pp  175 (523)
                      +|.+|+   |++..++
T Consensus       161 La~vf~---P~Ll~~~  173 (202)
T 2osa_A          161 LGIVFG---PTLMRSP  173 (202)
T ss_dssp             HHHHHH---HHHCCCC
T ss_pred             HHHHHc---cccCCCC
Confidence            788886   6666554

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}

Probab=99.97  E-value=6e-31  Score=247.64  Aligned_cols=157  Identities=17%  Similarity=0.235  Sum_probs=140.6

Q ss_pred             CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHH
Q psy8552           6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLK   84 (523)
Q Consensus         6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK   84 (523)
                      +-+|.+.+.  ++.||.+|.+|+++|+++     |+++|||||++|+ +.+++|++.||+|.. ++++..|+|+||++||
T Consensus        14 G~~L~~~~~--~~~vP~~v~~~i~~l~~~-----gl~~eGIfR~~g~~~~i~~l~~~~~~~~~-~~~~~~d~~~va~lLK   85 (201)
T 3msx_B           14 GISLPNICE--NDNLPKPVLDMLFFLNQK-----GPLTKGIFRQSANVKSCRELKEKLNSGVE-VHLDCESIFVIASVLK   85 (201)
T ss_dssp             TSCHHHHSG--GGCCCHHHHHHHHHHHHH-----GGGSTTTTTSCCCHHHHHHHHHHHHHTCC-CCTTSSCHHHHHHHHH
T ss_pred             CCcHHHHhc--CCCCCHHHHHHHHHHHHh-----CCCCCCeeeeCCCHHHHHHHHHHhccCCC-CCCCcccHHHHHHHHH
Confidence            445555544  356999999999999999     8999999999955 999999999999875 6888899999999999


Q ss_pred             HHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhh
Q psy8552          85 TYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSF  164 (523)
Q Consensus        85 ~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~  164 (523)
                      .|||+||+||+|.++|+.|+++.+..+.+++++.++.++.+||+.|+.+|+||+.||.+|+++++.|+|+..  ++|.+|
T Consensus        86 ~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~--nLa~vf  163 (201)
T 3msx_B           86 DFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAF--NLAVCV  163 (201)
T ss_dssp             HHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHH--HHHHHH
T ss_pred             HHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChh--hhhhhh
Confidence            999999999999999999999999989999999999999999999999999999999999999999988765  777777


Q ss_pred             ccccccCCCCC
Q psy8552         165 TFVLPTFSSPP  175 (523)
Q Consensus       165 ~~v~P~~~~pp  175 (523)
                      +   |++..++
T Consensus       164 ~---P~ll~~~  171 (201)
T 3msx_B          164 A---PSILWPP  171 (201)
T ss_dssp             H---HHHCCCC
T ss_pred             h---ccccCCC
Confidence            6   6666654

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A

Probab=99.97  E-value=8.5e-31  Score=247.98  Aligned_cols=160  Identities=19%  Similarity=0.302  Sum_probs=140.4

Q ss_pred             CCCCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCC--CCCHHHHH
Q psy8552           4 YAPNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFS--KLEPALLA   80 (523)
Q Consensus         4 ~~p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~--~~d~~~va   80 (523)
                      ..+-+|...+.. +..||.+|.+|+++|+++     |+++|||||++|+ ++|++|++.||++.. +++.  ++|+|+||
T Consensus        12 ~FG~~L~~~~~~-~~~vP~iv~~~i~~l~~~-----gl~~eGIfR~~g~~~~i~~l~~~~~~~~~-~~~~~~~~d~~~va   84 (209)
T 2ee4_A           12 YFGMPLQDLVTA-EKPIPLFVEKCVEFIEDT-----GLCTEGLYRVSGNKTDQDNIQKQFDQDHN-INLVSMEVTVNAVA   84 (209)
T ss_dssp             SSSSCHHHHSCS-SCCSCHHHHHHHHHHHHT-----CSCCTTTTTSCCCHHHHHHHHHHHHHCTT-CCHHHHTCCHHHHH
T ss_pred             eeCCcHHHHHhc-CCCCChHHHHHHHHHHHh-----CCCCCCccccCCCHHHHHHHHHHHhcCCC-CCcccCCCCHHHHH
Confidence            455666666543 457999999999999999     8999999999955 999999999999864 4443  47999999


Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccch
Q psy8552          81 IMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTIL  160 (523)
Q Consensus        81 ~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l  160 (523)
                      ++||.|||+||+||||+++|+.|+++.+..+..+++++++.++.+||+.|+.+|+||+.||.+|+++++.|+|+..  ++
T Consensus        85 ~lLK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~--NL  162 (209)
T 2ee4_A           85 GALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTAD--NL  162 (209)
T ss_dssp             HHHHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHH--HH
T ss_pred             HHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHH--HH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987755  77


Q ss_pred             hhhhccccccCCCCC
Q psy8552         161 IQSFTFVLPTFSSPP  175 (523)
Q Consensus       161 ~~~~~~v~P~~~~pp  175 (523)
                      |.+|+   |++..|+
T Consensus       163 aivf~---P~L~~~~  174 (209)
T 2ee4_A          163 SICFW---PTLMRPD  174 (209)
T ss_dssp             HHHHH---HHHSCCC
T ss_pred             HHHhc---ccccCCC
Confidence            88886   5666553

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*

Probab=99.97  E-value=1.1e-30  Score=245.06  Aligned_cols=160  Identities=21%  Similarity=0.327  Sum_probs=138.8

Q ss_pred             CCCCCcccccCCCC--CCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCC-CHHHH
Q psy8552           4 YAPNLLNKTDNVSS--TTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKL-EPALL   79 (523)
Q Consensus         4 ~~p~~L~~~~~~~~--~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~-d~~~v   79 (523)
                      ..+-+|...+...+  ..||.+|.+|+++|+++     |+++|||||++|+ ++|++|++.||+|.. ++++.+ |+|++
T Consensus         8 vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~-----gl~~eGIfR~~g~~~~i~~l~~~~~~~~~-~~~~~~~d~~~~   81 (198)
T 1tx4_A            8 QFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAH-----ALTTEGIFRRSANTQVVREVQQKYNMGLP-VDFDQYNALHLP   81 (198)
T ss_dssp             CTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHH-----CTTCTTTTTSCCCHHHHHHHHHHHHTTCC-CCGGGSSCTHHH
T ss_pred             ccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHh-----CCCCCCeeecCCcHHHHHHHHHHHhCCCC-CCccccccchHH
Confidence            34556666665554  48999999999999999     8999999999955 999999999999875 566654 89999


Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc
Q psy8552          80 AIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTI  159 (523)
Q Consensus        80 a~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~  159 (523)
                      |++||.|||+||+||+|+++|+.|+++.+. +.++++++++.++.+||+.|+.+|+||+.||.+|+++++.|+|+..  +
T Consensus        82 a~lLK~flreLpePLi~~~l~~~~~~~~~~-~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~--n  158 (198)
T 1tx4_A           82 AVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNT--N  158 (198)
T ss_dssp             HHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH--H
T ss_pred             HHHHHHHHHHCCCcCCCHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHH--H
Confidence            999999999999999999999999998764 5678999999999999999999999999999999999999988755  7


Q ss_pred             hhhhhccccccCCCCC
Q psy8552         160 LIQSFTFVLPTFSSPP  175 (523)
Q Consensus       160 l~~~~~~v~P~~~~pp  175 (523)
                      +|.+|+   |++..++
T Consensus       159 La~vf~---P~Ll~~~  171 (198)
T 1tx4_A          159 LAVVFG---PNLLWAK  171 (198)
T ss_dssp             HHHHHH---HHHCCCS
T ss_pred             HHhhhc---ccccCCC
Confidence            788886   5665553

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}

Probab=99.97  E-value=1.8e-30  Score=249.18  Aligned_cols=159  Identities=21%  Similarity=0.354  Sum_probs=140.5

Q ss_pred             CCCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCC----CCHHHH
Q psy8552           5 APNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSK----LEPALL   79 (523)
Q Consensus         5 ~p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~----~d~~~v   79 (523)
                      ++-+|...+..++..||.+|.+|+++|+++     |+ +|||||++|+ ++|++|++.||++.. .++..    .|+|+|
T Consensus        22 FG~~L~~~~~~~~~~vP~iv~~~i~~i~~~-----gl-~eGIfR~~G~~~~i~~L~~~~~~~~~-~~~~~~~~~~dvh~v   94 (229)
T 3iug_A           22 FGCDLGEHLLNSGFEVPQVLQSCTAFIERY-----GI-VDGIYRLSGVASNIQRLRHEFDSEHV-PDLTKEPYVQDIHSV   94 (229)
T ss_dssp             TTSCHHHHHHHHCCSSCHHHHHHHHHHHHH-----CC-STTTTTSCCCHHHHHHHHHHHHTTCC-CCTTSTTTTTCHHHH
T ss_pred             ECcchHHHHHhcCCCCCHHHHHHHHHHHHc-----CC-CCCCeecCCcHHHHHHHHHHHhcCCC-CCccccccccchHHH
Confidence            345566666777889999999999999999     88 7999999955 999999999999864 34432    499999


Q ss_pred             HHHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc
Q psy8552          80 AIMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTI  159 (523)
Q Consensus        80 a~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~  159 (523)
                      |++||.|||+||+||||+++|+.|+++.+..+.++++.+++.++.+||+.|+.+|+||+.||.+|+++++.|+|+..  +
T Consensus        95 a~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--N  172 (229)
T 3iug_A           95 GSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAK--N  172 (229)
T ss_dssp             HHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHH--H
T ss_pred             HHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCChH--H
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987755  7


Q ss_pred             hhhhhccccccCCCCC
Q psy8552         160 LIQSFTFVLPTFSSPP  175 (523)
Q Consensus       160 l~~~~~~v~P~~~~pp  175 (523)
                      +|.+|+   |++..++
T Consensus       173 LAivf~---P~Ll~~~  185 (229)
T 3iug_A          173 LAIVWA---PNLLRSK  185 (229)
T ss_dssp             HHHHHH---HHHCCC-
T ss_pred             HHHHHh---ccccCCC
Confidence            788886   6666664

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.9e-29  Score=244.34  Aligned_cols=159  Identities=18%  Similarity=0.303  Sum_probs=140.3

Q ss_pred             CCCCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCC--CCCHHHHH
Q psy8552           4 YAPNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFS--KLEPALLA   80 (523)
Q Consensus         4 ~~p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~--~~d~~~va   80 (523)
                      .++-+|...+. .+..||.+|.+|+++|+++     |+++|||||++|+ +.|++|++.||+|.. .++.  ++|+|+||
T Consensus        53 vFGv~L~~~~~-~~~~vP~iv~~~i~~l~~~-----gl~~eGIFR~sG~~~~v~~L~~~~d~~~~-~~~~~~~~dvh~va  125 (246)
T 3fk2_A           53 YFGVPLTTVVT-PEKPIPIFIERCIEYIEAT-----GLSTEGIYRVSGNKSEMESLQRQFDQDHN-LDLAEKDFTVNTVA  125 (246)
T ss_dssp             STTSCGGGGCC-SSSCSCHHHHHHHHHHHHH-----CTTSTTTTTSCCCHHHHHHHHHHHHHCTT-CCSGGGTCCHHHHH
T ss_pred             eeCCCHHHHhc-CCCCCChHHHHHHHHHHHh-----CCCCCCeeEeCCcHHHHHHHHHHHhcCCC-CCcccccCcHHHHH
Confidence            45566777665 3568999999999999999     8999999999955 999999999999864 4543  56999999


Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccch
Q psy8552          81 IMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTIL  160 (523)
Q Consensus        81 ~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l  160 (523)
                      ++||.|||+||+||||+++|+.|+++.+..+.++++.+++.++..||+.|+.+|+||+.||.+|+++++.|+|+..  ++
T Consensus       126 ~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~--NL  203 (246)
T 3fk2_A          126 GAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSE--NL  203 (246)
T ss_dssp             HHHHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHH--HH
T ss_pred             HHHHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchH--Hh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987765  77


Q ss_pred             hhhhccccccCCCC
Q psy8552         161 IQSFTFVLPTFSSP  174 (523)
Q Consensus       161 ~~~~~~v~P~~~~p  174 (523)
                      |.+|+   |++..|
T Consensus       204 Aivf~---P~Llrp  214 (246)
T 3fk2_A          204 SICFW---PTLMRP  214 (246)
T ss_dssp             HHHHH---HHHHCC
T ss_pred             HHHhc---ccccCC
Confidence            77776   555544

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*

Probab=99.96  E-value=5.8e-30  Score=247.31  Aligned_cols=158  Identities=22%  Similarity=0.343  Sum_probs=137.3

Q ss_pred             CCCCcccccCCCC--CCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCC-CHHHHH
Q psy8552           5 APNLLNKTDNVSS--TTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKL-EPALLA   80 (523)
Q Consensus         5 ~p~~L~~~~~~~~--~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~-d~~~va   80 (523)
                      ++-+|.......+  ..||.+|.+|+++|+++     |+++|||||++|+ ++|++|++.||+|.. ++++.+ |+|++|
T Consensus        45 FG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~-----gl~~eGIfR~sG~~~~i~~L~~~~d~~~~-~~~~~~~dv~~va  118 (242)
T 1ow3_A           45 FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAH-----ALTTEGIFRRSANTQVVREVQQKYNMGLP-VDFDQYNELHLPA  118 (242)
T ss_dssp             SSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHH-----CTTCTTTTTSCCCHHHHHHHHHHHHTTCC-CCGGGSSCTHHHH
T ss_pred             cCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHc-----CCCCCceeeeCCcHHHHHHHHHHHhcCCC-CCcccccchHHHH
Confidence            3445555554444  48999999999999999     8999999999955 999999999999875 577665 899999


Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccch
Q psy8552          81 IMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTIL  160 (523)
Q Consensus        81 ~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l  160 (523)
                      ++||.|||+||+||+|+++|+.|+++.+. +.++++++++.++.+||+.|+.+|+||+.||.+|+++++.|+|+..  ++
T Consensus       119 ~lLK~flReLPePLl~~~ly~~~~~~~~~-~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NL  195 (242)
T 1ow3_A          119 VILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNT--NL  195 (242)
T ss_dssp             HHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH--HH
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHH--Hh
Confidence            99999999999999999999999998764 5778999999999999999999999999999999999999988755  77


Q ss_pred             hhhhccccccCCCC
Q psy8552         161 IQSFTFVLPTFSSP  174 (523)
Q Consensus       161 ~~~~~~v~P~~~~p  174 (523)
                      |.+||   |++..+
T Consensus       196 Aivf~---P~Ll~~  206 (242)
T 1ow3_A          196 AVVFG---PNLLWA  206 (242)
T ss_dssp             HHHHH---HHHCCC
T ss_pred             HHhhc---chhCCC
Confidence            88886   566554

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1

Probab=99.96  E-value=3.1e-29  Score=240.64  Aligned_cols=147  Identities=23%  Similarity=0.286  Sum_probs=128.2

Q ss_pred             CCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHH-HHhCCC-CCCCCC---CCCHHHHHHHHHHHHhhcCC
Q psy8552          19 TSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFH-AYSGEI-KSYNFS---KLEPALLAIMLKTYLKSLTE   92 (523)
Q Consensus        19 ~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~-~~~~~~-~~~~~~---~~d~~~va~lLK~flr~Lpe   92 (523)
                      .+|.+|.+|++||+++     |+++|||||++|+ ++|++|++ .+|.+. ..++++   ++|+|+||++||.|||+||+
T Consensus        36 ~~p~iv~~ci~~le~~-----gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flReLPe  110 (231)
T 1f7c_A           36 IGFSIIKKCIHAVETR-----GINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPG  110 (231)
T ss_dssp             HHHHHHHHHHHHHHHH-----CTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSS
T ss_pred             cCccHHHHHHHHHHHh-----CCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccHHHHHHHHHHHHHHCCC
Confidence            5799999999999999     8999999999955 99999987 578764 224554   47999999999999999999


Q ss_pred             CCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccccccCC
Q psy8552          93 PLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFS  172 (523)
Q Consensus        93 Pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~~~  172 (523)
                      ||||+++|+.|+++.+..+.++++.+++.++.+||+.|+.+|+||+.||.+|+++++.|+|+..  ++|.+|+   |++.
T Consensus       111 PLl~~~ly~~~~~~~~~~~~~~r~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLAivf~---P~Ll  185 (231)
T 1f7c_A          111 PLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVA--NLGVVFG---PTLL  185 (231)
T ss_dssp             CTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH--HHHHHHH---HHHS
T ss_pred             CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHH--HHHHHhc---cccC
Confidence            9999999999999999989999999999999999999999999999999999999999988755  7788886   6666


Q ss_pred             CCC
Q psy8552         173 SPP  175 (523)
Q Consensus       173 ~pp  175 (523)
                      .++
T Consensus       186 ~~~  188 (231)
T 1f7c_A          186 RPQ  188 (231)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            553

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=99.95  E-value=4.2e-28  Score=256.24  Aligned_cols=160  Identities=24%  Similarity=0.310  Sum_probs=140.4

Q ss_pred             CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCC---CCCHHHHHH
Q psy8552           6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFS---KLEPALLAI   81 (523)
Q Consensus         6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~---~~d~~~va~   81 (523)
                      +-+|...+..++..||.+|.+|+++|+++     |+++|||||++|+ +.|++|++.||++....+++   ..|+|+||+
T Consensus       271 G~~L~~~~~~~~~~vP~iv~~~i~~le~~-----gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~  345 (463)
T 3cxl_A          271 SCDLTTLVKAHTTKRPMVVDMCIREIESR-----GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG  345 (463)
T ss_dssp             TSCHHHHHHHHTCSSCHHHHHHHHHHHHH-----CSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHH
T ss_pred             ccccchhhhccCCCCCeeHHHHHHHHHhc-----CCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhh
Confidence            44555556666789999999999999999     8999999999955 99999999999854334443   258999999


Q ss_pred             HHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchh
Q psy8552          82 MLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILI  161 (523)
Q Consensus        82 lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~  161 (523)
                      +||.|||+||+||||+++|+.|+++.+..+.++++++++.++..||+.|+.+|+||+.||.+|+++++.|+|+..  ++|
T Consensus       346 lLK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~--NLA  423 (463)
T 3cxl_A          346 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAE--NLG  423 (463)
T ss_dssp             HHHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH--HHH
T ss_pred             HHHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHH--HHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987755  777


Q ss_pred             hhhccccccCCCCC
Q psy8552         162 QSFTFVLPTFSSPP  175 (523)
Q Consensus       162 ~~~~~v~P~~~~pp  175 (523)
                      .+|+   |++..++
T Consensus       424 ivf~---P~Ll~~~  434 (463)
T 3cxl_A          424 IVFG---PTLMRSP  434 (463)
T ss_dssp             HHHH---HHHCCCC
T ss_pred             HHhh---ccccCCC
Confidence            7886   6666654

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}

Probab=99.95  E-value=5.2e-29  Score=235.19  Aligned_cols=150  Identities=21%  Similarity=0.212  Sum_probs=120.4

Q ss_pred             CCCCcccccC--CCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCChhHHHHHHHHHhCCCCCCCCCCCCHHHHHHH
Q psy8552           5 APNLLNKTDN--VSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIM   82 (523)
Q Consensus         5 ~p~~L~~~~~--~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~~~v~~l~~~~~~~~~~~~~~~~d~~~va~l   82 (523)
                      ++-+|.+.+.  .....||.+|.+|+++|+++     |+++|||||++|+.    ||+    +....+++..|+|+||++
T Consensus        23 FGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~-----Gl~~eGIfR~sG~~----lr~----~~~~~dl~~~dvh~va~l   89 (214)
T 2xs6_A           23 MGLTLPDLPEQFSPPDVAPPLLVKLVEAIERT-----GLDSESHYRPELPA----PRT----DWSLSDVDQWDTAALADG   89 (214)
T ss_dssp             --CCCCCHHHHCCTTCCSCHHHHHHHHHHHHH-----CTTCSGGGCCSCCC----CCC----CCCCTTGGGCCHHHHHHH
T ss_pred             cCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHh-----CCCCCCCeeeCHHH----HHh----ccccCCCccCCHHHHHHH
Confidence            3556666655  45578999999999999999     89999999999766    333    222367778899999999


Q ss_pred             HHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhh
Q psy8552          83 LKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQ  162 (523)
Q Consensus        83 LK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~  162 (523)
                      ||.|||+||+||||+++|+.|+++.+..+..+++.   .++.+||+.|+.+|+||+.||.+|+++++.|+|+..  ++|.
T Consensus        90 LK~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~---~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLAi  164 (214)
T 2xs6_A           90 IKSFLLALPAPLVTPEASAEARRALREAAGPVGPA---LEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVR--ALGA  164 (214)
T ss_dssp             HHHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGG---GSTTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHH--HHHH
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHH---HHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHH--HHHH
Confidence            99999999999999999999999998666555544   688999999999999999999999999988876644  6777


Q ss_pred             hhccccccCCCCC
Q psy8552         163 SFTFVLPTFSSPP  175 (523)
Q Consensus       163 ~~~~v~P~~~~pp  175 (523)
                      +|+   |++..++
T Consensus       165 vf~---P~Ll~~~  174 (214)
T 2xs6_A          165 TFG---PLLLRAP  174 (214)
T ss_dssp             HHH---HHHHC--
T ss_pred             HHh---hhhcCCc
Confidence            776   6665554

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}

Probab=99.94  E-value=3.7e-27  Score=231.15  Aligned_cols=157  Identities=16%  Similarity=0.171  Sum_probs=123.4

Q ss_pred             CCCCcccccC---CCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHH
Q psy8552           5 APNLLNKTDN---VSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLA   80 (523)
Q Consensus         5 ~p~~L~~~~~---~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va   80 (523)
                      ++-+|.+.+.   .....||.+|.+||++|+ +     |+++|||||++|+ +.|++|++.||+|..  .+.+.|+|+||
T Consensus        65 FGv~L~~l~~~~~~~~~~iP~~l~~~~~~le-~-----gl~~eGIfR~sG~~~~i~~L~~~~d~~~~--~~~~~~~~~va  136 (271)
T 3eap_A           65 FGVPFNALPHSAVPEYGHIPSFLVDACTSLE-D-----HIHTEGLFRKSGSVIRLKALKNKVDHGEG--CLSSAPPCDIA  136 (271)
T ss_dssp             TTSCGGGSCEEEETTTEEEEHHHHHHHHHHG-G-----GTTC--------CHHHHHHHHHHHHHC-------CCCHHHHH
T ss_pred             eCCcHHHHHhhccCCCCCcChHHHHHHHHHH-h-----CCCCCCeeeeCCCHHHHHHHHHHHHcCCC--CcccccHHHHH
Confidence            3445555433   245679999999999997 4     6899999999955 999999999999875  35678999999


Q ss_pred             HHHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccch
Q psy8552          81 IMLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTIL  160 (523)
Q Consensus        81 ~lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l  160 (523)
                      ++||.|||+||+||||+++|+.|+.+.+. +.++++.+++.++..||+.|+.+|+||+.||.+|+++++.|+|+..  ++
T Consensus       137 ~lLK~fLReLPePLl~~~ly~~~~~~~~~-~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NL  213 (271)
T 3eap_A          137 GLLKQFFRELPEPILPADLHEALLKAQQL-GTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSS--NL  213 (271)
T ss_dssp             HHHHHHHHHSSSCSSCGGGHHHHHHHTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH--HH
T ss_pred             HHHHHHHHhCCcccCCHHHHHHHHHHHHH-hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHH--HH
Confidence            99999999999999999999999999986 4567888889999999999999999999999999999999987765  77


Q ss_pred             hhhhccccccCCCCC
Q psy8552         161 IQSFTFVLPTFSSPP  175 (523)
Q Consensus       161 ~~~~~~v~P~~~~pp  175 (523)
                      |.+|+   |++..++
T Consensus       214 Aivf~---P~Ll~~~  225 (271)
T 3eap_A          214 AVIFA---PNLLQTS  225 (271)
T ss_dssp             HHHHH---HHHHTCC
T ss_pred             HHHHH---hHhccCC
Confidence            77886   5665553

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=99.93  E-value=2.2e-26  Score=235.12  Aligned_cols=144  Identities=19%  Similarity=0.286  Sum_probs=125.6

Q ss_pred             CCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhcCC
Q psy8552          14 NVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTE   92 (523)
Q Consensus        14 ~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lpe   92 (523)
                      ......||.+|.+|++||+++     |+++|||||++|+ .++++|++.||.|.. .++. .|+|+||++||.|||+||+
T Consensus       193 ~~~~~~iP~~v~~~i~~l~~~-----Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~-~~~~-~dvh~va~lLK~fLReLPe  265 (366)
T 3qis_A          193 SERPLQVPKEIWLLVDHLFKY-----ACHQEDLFQTPGMQEELQQIIDCLDTSIP-ETIP-GSNHSVAEALLIFLEALPE  265 (366)
T ss_dssp             --CCCSSCHHHHHHHHHHHHH-----CTTCTTTTTSCCCHHHHHHHHHHHHHCCC-SSCC-SCHHHHHHHHHHHHHHCSS
T ss_pred             cCCCCCcChHHHHHHHHHHhc-----CCCCCCeEeCCCCHHHHHHHHHHHcCCCC-Cccc-cCHHHHHHHHHHHHHhCCC
Confidence            344568999999999999999     8999999999955 999999999999875 3443 4999999999999999999


Q ss_pred             CCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccccccCC
Q psy8552          93 PLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFS  172 (523)
Q Consensus        93 Pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~~~  172 (523)
                      ||||+++|+.|+++.+.      ...++.++..||+.|+.+|+||+.||++|+++++.|+|+..  ++|.+|+   |++.
T Consensus       266 PLi~~~ly~~~~~~~~~------~~~~~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~--NLA~vf~---P~Ll  334 (366)
T 3qis_A          266 PVICYELYQRCLDSAYD------PRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNAN--MIATLFT---SLLL  334 (366)
T ss_dssp             CSSCHHHHHHHHHHTTC------HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHH--HHHHHHH---HHHS
T ss_pred             CCCcHHHHHHHHHHhhh------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHH--HHHHHHh---hhcc
Confidence            99999999999999863      24567899999999999999999999999999999988765  7888886   6777


Q ss_pred             CCC
Q psy8552         173 SPP  175 (523)
Q Consensus       173 ~pp  175 (523)
                      .+|
T Consensus       335 r~~  337 (366)
T 3qis_A          335 RPP  337 (366)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            665

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.92  E-value=4e-25  Score=189.19  Aligned_cols=111  Identities=29%  Similarity=0.534  Sum_probs=101.3

Q ss_pred             CCCCcCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCH
Q psy8552         205 SGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSV  284 (523)
Q Consensus       205 ~~~~~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl  284 (523)
                      +......++.++||||.|+|++||++|.+.++|+||||+|++.+|.|+||++.+++++||+|...+|+|++.+...|+||
T Consensus         6 ~~~~~~~l~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~g~~~l~~~~~F~sl   85 (118)
T 2dlz_A            6 SGSREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEAKKFDSL   85 (118)
T ss_dssp             CCSCCCCGGGSTTEEESCCHHHHHHHHHHSCTTBEEEECCSCSSCCEEEEEECSSSEEEEEEEEETTEEESTTSCCBSSH
T ss_pred             CCCCccccccCCceecCCCHHHHHHHhcCCCCCEEEEEeCCCCCCCEEEEEEECCcEEEEEEEEcCCEEEEeCCcccCCH
Confidence            33456778899999999999999999998899999999999889999999999999999999998999999877999999


Q ss_pred             HHHHHHHhhCCcccCCCCcceeeccccccCC
Q psy8552         285 VELINYYKHESLSQYNSTLDTRLLYPVSRFS  315 (523)
Q Consensus       285 ~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~  315 (523)
                      .+||+||+.+++...+.++++.|+.||+++.
T Consensus        86 ~~LV~~y~~~~l~~~~~gl~~~L~~Pv~~p~  116 (118)
T 2dlz_A           86 LELVEYYQCHSLKESFKQLDTTLKYPYSGPS  116 (118)
T ss_dssp             HHHHHHHTTSCTTTTCTTCCCCCCBCCSCCC
T ss_pred             HHHHHHHhhCcccccCCCcccEeCCcCCCCC
Confidence            9999999999987766789999999999854

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A

Probab=99.92  E-value=5.6e-25  Score=182.26  Aligned_cols=98  Identities=26%  Similarity=0.546  Sum_probs=91.6

Q ss_pred             CCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHHH
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINY  290 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~  290 (523)
                      +++.++||||.|+|++||++|.+.++|+||||+|++.+|.|+||++.+++++||+|...+|+|++.+...|+||.+||+|
T Consensus         1 ~L~~~~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~Lv~~   80 (98)
T 3us4_A            1 GLSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEAVFFCNLMDMVEH   80 (98)
T ss_dssp             -CTTCTTBCCSCCHHHHHHHTCSCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEETTEEESSSSSEESSHHHHHHH
T ss_pred             CCccCcccCCCCCHHHHHHHccCCCCcEEEEEeCCCCCCcEEEEEEECCceEEEEEEEeCCEEEECCCCccCCHHHHHHH
Confidence            36789999999999999999998889999999999889999999999999999999999999999888899999999999


Q ss_pred             HhhCCcccCCCCcceeecccccc
Q psy8552         291 YKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       291 y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      |+.++.     ++++.|..||++
T Consensus        81 y~~~~~-----~l~~~L~~P~pk   98 (98)
T 3us4_A           81 YSKDKG-----AICTKLVRPKRK   98 (98)
T ss_dssp             HHHCCT-----TSSSCCCSBCCC
T ss_pred             hhhCCC-----CCeEcCCccCCC
Confidence            999884     889999999975

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.92  E-value=2.5e-25  Score=204.60  Aligned_cols=132  Identities=23%  Similarity=0.280  Sum_probs=116.3

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcC--CCCCeEEeecCC--CCc
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPST--TGQ  451 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~--~~~G~FLvR~s~--~~~  451 (523)
                      .+++.++.. +.+||.++...++..|++|++++.... .++.++||| .|+|.+||++|..  +++|+||||.|+  +|.
T Consensus        34 Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~~-~l~~~~w~~g~isr~~ae~lL~~~~~~~G~FLVR~S~~~~g~  111 (175)
T 4d8k_A           34 GEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKAN-SLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGS  111 (175)
T ss_dssp             TCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEETT-CSTTCTTBCSSCCHHHHHHHHHSTTCCTTCEEEEECSSSTTC
T ss_pred             CCEEEEEcc-CCCEEEEEECCCCceeeeccccccccc-cccccceecCcccHHHHHHHHhcCCCCCCEEEEEECCCCCCe
Confidence            677777655 569999998878899999999988766 688899999 9999999999964  469999999997  999


Q ss_pred             eEEEEEE-----CCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccC
Q psy8552         452 YALSIVC-----SGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       452 ~~Ls~~~-----~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      |+||++.     ++.|+||+|....+|.++......|+||.+||+||++++     +|++++|+.||+.
T Consensus       112 y~LSv~~~~~~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~y~~~~-----~gl~~~L~~Pc~~  175 (175)
T 4d8k_A          112 FSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPCQT  175 (175)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEECSSSCEESSTTSEESSHHHHHHHHHHCC-----TTSSSCCCSBCCC
T ss_pred             EEEEEEeCcccCCCceEEEEEEECCCCCEEECCCCccCCHHHHHHHHhhCC-----CCCcccCCCcCCC
Confidence            9999998     789999999988777666666689999999999999986     9999999999963

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A

Probab=99.92  E-value=5.8e-25  Score=188.87  Aligned_cols=111  Identities=71%  Similarity=1.222  Sum_probs=99.5

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCC-CCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHH
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVEL  287 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~-~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~L  287 (523)
                      ...++.++||||.|+|++||++|.+.++|+||||+|++. +|.|+||++.+++++||+|...+|+|++.+...|+||.+|
T Consensus         5 ~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~g~y~LSv~~~~~v~H~~I~~~~g~~~l~~~~~F~sl~~L   84 (120)
T 2iug_A            5 NMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLTFSSVVEL   84 (120)
T ss_dssp             CHHHHTCTTBCCSCCHHHHHHHHTTCCTTEEEEEECSSGGGCSEEEEEEETTEEEEEEEEEETTEEESSSSCCBSSHHHH
T ss_pred             ccccccCCccccCCCHHHHHHHhcCCCCcEEEEECCCCCCCCcEEEEEEECCEEEEEEEEEcCCEEEECCCCccCCHHHH
Confidence            455788999999999999999999889999999999987 8999999999999999999988999999878899999999


Q ss_pred             HHHHhhCCcccCCCCcceeeccccccCCCCcc
Q psy8552         288 INYYKHESLSQYNSTLDTRLLYPVSRFSSDVD  319 (523)
Q Consensus       288 V~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~  319 (523)
                      |+||+.+++...+.++++.|+.||++....+.
T Consensus        85 I~~y~~~~~~~~~~~l~~~L~~Pv~r~~~~~~  116 (120)
T 2iug_A           85 INHYRNESLAQYNPKLDVKLLYPVSKYQQDQV  116 (120)
T ss_dssp             HHHHHHSCGGGTCGGGCCCCCEECCTTTC---
T ss_pred             HHHHHhCccccccCCcceeeCCcCCcCccccc
Confidence            99999999876556789999999998766544

>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A

Probab=99.91  E-value=1.5e-24  Score=186.39  Aligned_cols=106  Identities=26%  Similarity=0.520  Sum_probs=99.0

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHH
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELI  288 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV  288 (523)
                      ..+++.++||||.|+|++||++|...++|+||||+|++.+|.|+||++.+++++||+|...+++|++.+...|+||.+||
T Consensus        16 ~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~l~~~~~F~sl~eLV   95 (122)
T 2lnw_A           16 EIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEAKKFDSLLELV   95 (122)
T ss_dssp             CCCSTTSTTBCCSCCHHHHHHHHHHSCTTBEEEEECCCSSEEEEEEEECSSCEEEEEEEEETTEEESSSSCCBSSHHHHH
T ss_pred             cCCcccCcCCCcCCCHHHHHHHhcCCCCCeEEEEeCCCCCCcEEEEEEeCCcEEEEEEEEcCCEEEECCCCeECCHHHHH
Confidence            56688899999999999999999888899999999998899999999999999999999989999998889999999999


Q ss_pred             HHHhhCCcccCCCCcceeeccccccC
Q psy8552         289 NYYKHESLSQYNSTLDTRLLYPVSRF  314 (523)
Q Consensus       289 ~~y~~~~~~~~~~~l~~~L~~p~~~~  314 (523)
                      +||+.+++...++++++.|+.||+++
T Consensus        96 ~~y~~~~l~~~~~~l~~~L~~P~~~p  121 (122)
T 2lnw_A           96 EYYQCHSLKESFKQLDTTLKYPYKSR  121 (122)
T ss_dssp             HHHHHSCGGGTCTTCCCCCCBCSSSC
T ss_pred             HHHhhCcCcccCCCcCeeeCCcCCCC
Confidence            99999998877789999999999864

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A

Probab=99.91  E-value=1.8e-24  Score=181.82  Aligned_cols=101  Identities=26%  Similarity=0.476  Sum_probs=93.4

Q ss_pred             CCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHH
Q psy8552         210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELIN  289 (523)
Q Consensus       210 ~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~  289 (523)
                      .+++.++||||.|+|++||++|...++|+||||+|++.+|.|+||++.+++++||+|...+|.|++.+...|+||.+||+
T Consensus         3 ~~L~~~~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~g~~~l~~~~~F~sl~~Lv~   82 (106)
T 3eaz_A            3 TKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSIDEEVYFENLMQLVE   82 (106)
T ss_dssp             CTGGGCTTBCCSCCHHHHHHHTCSCCTTEEEEEECTTSTTCEEEEEEETTEEEEEECEEETTEEESSSSSCBSSHHHHHH
T ss_pred             cccccCCCcCCCCCHHHHHHHhCCCCCCEEEEEECCCCCCcEEEEEEeCCceEEEEEEecCCEEEECCCCccCCHHHHHH
Confidence            45788999999999999999999888999999999988999999999999999999999899999988889999999999


Q ss_pred             HHhhCCcccCCCCcceeeccccccCC
Q psy8552         290 YYKHESLSQYNSTLDTRLLYPVSRFS  315 (523)
Q Consensus       290 ~y~~~~~~~~~~~l~~~L~~p~~~~~  315 (523)
                      ||+.++.     ++++.|+.||++..
T Consensus        83 ~y~~~~~-----gl~~~L~~P~~~~~  103 (106)
T 3eaz_A           83 HYTSDAD-----GLCTRLIKPKVMEG  103 (106)
T ss_dssp             HHHHCCT-----TSSSCCCEECCCC-
T ss_pred             HHhhCCC-----CCCeecCCcCCCCC
Confidence            9999874     88999999999754

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A

Probab=99.91  E-value=3.5e-24  Score=181.77  Aligned_cols=105  Identities=53%  Similarity=0.919  Sum_probs=94.8

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  492 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~  492 (523)
                      .++.++||| .|+|++||++|.+.++|+||||.|. +|.|+||++.++.|+||+|...++|+++......|+||.+||+|
T Consensus         6 ~~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~   85 (112)
T 1h9o_A            6 HHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLKELVLH   85 (112)
T ss_dssp             GGSGGGTBCCSCCHHHHHHHHTTCCTTEEEEEECSSTTCEEEEEEETTEEEEEEEEEETTEEESSTTCCCBSSHHHHHHH
T ss_pred             cccCCCcccCCCCHHHHHHHhcCCCCceEEEeecCCCCCEEEEEEECCEEEEEEEEEcCCceEEeCCCCCcCCHHHHHHH
Confidence            578889999 9999999999988889999999998 99999999999999999999999888887656799999999999


Q ss_pred             HhhCCccccCCccceeecccccCCCCC
Q psy8552         493 YAANSLEEHNDDLKTTLAYPVFAPASG  519 (523)
Q Consensus       493 y~~~~l~~~~~~l~~~L~~pv~~~~~~  519 (523)
                      |+++++..+++|++++|++||.++.|.
T Consensus        86 y~~~~l~~~~~gl~~~L~~P~~~~~p~  112 (112)
T 1h9o_A           86 YQHTSLVQHNDSLNVTLAYPVYAQQRR  112 (112)
T ss_dssp             HHHSCGGGTCTTCCCCCCEETTC----
T ss_pred             HhhCcccccCCCcCeeCCCCcCCCCCC
Confidence            999999888899999999999998763

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A

Probab=99.91  E-value=6.1e-24  Score=180.25  Aligned_cols=106  Identities=33%  Similarity=0.511  Sum_probs=94.1

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCC-CCccCCHHHH
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSE-PFKFTSVVEL  287 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~-~~~F~sl~~L  287 (523)
                      ...++.++||||.|+|++||++|.+.++|+||||+| +.+|.|+|||+.+++++||+|...+++|++.+ ...|+||.+|
T Consensus         4 ~~~~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S-~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~L   82 (112)
T 1h9o_A            4 IPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLKEL   82 (112)
T ss_dssp             CGGGSGGGTBCCSCCHHHHHHHHTTCCTTEEEEEEC-SSTTCEEEEEEETTEEEEEEEEEETTEEESSTTCCCBSSHHHH
T ss_pred             CccccCCCcccCCCCHHHHHHHhcCCCCceEEEeec-CCCCCEEEEEEECCEEEEEEEEEcCCceEEeCCCCCcCCHHHH
Confidence            455778899999999999999999889999999999 66899999999999999999998877787754 5789999999


Q ss_pred             HHHHhhCCcccCCCCcceeeccccccCC
Q psy8552         288 INYYKHESLSQYNSTLDTRLLYPVSRFS  315 (523)
Q Consensus       288 V~~y~~~~~~~~~~~l~~~L~~p~~~~~  315 (523)
                      |+||+.+++...++++++.|+.||++..
T Consensus        83 V~~y~~~~l~~~~~gl~~~L~~P~~~~~  110 (112)
T 1h9o_A           83 VLHYQHTSLVQHNDSLNVTLAYPVYAQQ  110 (112)
T ss_dssp             HHHHHHSCGGGTCTTCCCCCCEETTC--
T ss_pred             HHHHhhCcccccCCCcCeeCCCCcCCCC
Confidence            9999999887766789999999999753

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=99.90  E-value=1.6e-24  Score=212.60  Aligned_cols=149  Identities=42%  Similarity=0.648  Sum_probs=111.8

Q ss_pred             ccccccccccc--ccccccchhHHHhhhhhccccccc--ccCC----------CCCCCCCCCcccc-cCCHHHHHHHhcC
Q psy8552         372 LYPVSRFSSDV--DADIHSNDVDKYINLKIAFTNLSG--AVAS----------TVDFESGEKTWLV-RMSRAQAEALLSG  436 (523)
Q Consensus       372 m~~l~~~~~~l--~k~~~~~w~~~r~~~~~~~g~~p~--~~~~----------~~~~~~~~~~W~~-~isr~~Ae~~L~~  436 (523)
                      |..+.|+.+++  .++++..||.++...++..++++.  ++++          ..+ .+..++||| .|+|.+||.+|.+
T Consensus       134 ln~~~pdw~~l~k~rd~~~~wl~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~WyhG~IsR~eAE~lL~~  212 (302)
T 2y3a_B          134 MNSLKPDLMQLRKIRDQYLVWLTQKGARQRKINEWLGIKNETEDQYSLMEDEDALP-HHEERTWYVGKINRTQAEEMLSG  212 (302)
T ss_dssp             HHHHTHHHHHHHHHHTTCCSCC--------------------------------CG-GGSSTTTBCCSCCHHHHHHHHTT
T ss_pred             hccCChHHHHHhhcccchhHHHHhcCCCcccccccccccCCCCCcccccccccccc-cccCCCccCCCCCHHHHHHHhcC
Confidence            55666777777  457888999988877766555553  2211          122 578889999 9999999999988


Q ss_pred             CCCCeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccC
Q psy8552         437 RPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       437 ~~~G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      .++|+||||.|. +|.|+|||+.++.|+||+|...++|+++......|+||.+||+||+.+++..+++|++++|++||++
T Consensus       213 ~~~GtFLVR~Ss~~g~y~LSv~~~~~V~H~rI~~~~~g~~~~~~~~~F~SL~eLV~~Y~~~~L~~~~~gl~~~L~~Pv~~  292 (302)
T 2y3a_B          213 KRDGTFLIRESSQRGCYACSVVVDGDTKHCVIYRTATGFGFAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRA  292 (302)
T ss_dssp             SCTTBEEBCCCSSTTCEEEEEECSSSEEEEEEEEETTEEESBTTBCCCSSHHHHHHTTSSSCSTTTCSSCCCCCSBCSCC
T ss_pred             CCCCcEEEEeccCCCceEEEEEeCCeeEEEEEEECCCceEEeCCCCCCCCHHHHHHHHHhCCccccCCCCceeeCCccCC
Confidence            889999999998 9999999999999999999999988888766579999999999999999988889999999999999


Q ss_pred             CCCCCc
Q psy8552         516 PASGMT  521 (523)
Q Consensus       516 ~~~~~~  521 (523)
                      +.|..+
T Consensus       293 ~~P~~~  298 (302)
T 2y3a_B          293 PGPGPP  298 (302)
T ss_dssp             CC----
T ss_pred             CCCCCC
Confidence            877543

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*

Probab=99.90  E-value=1e-23  Score=185.26  Aligned_cols=111  Identities=30%  Similarity=0.522  Sum_probs=100.8

Q ss_pred             CCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHH
Q psy8552         210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELIN  289 (523)
Q Consensus       210 ~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~  289 (523)
                      .+++.++||||.|+|++||++|.+.++|+||||+|++.+|.|+|||+.+++++||+|...+|.|++.+...|.||.+||+
T Consensus        21 ~~~~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~g~~~l~~~~~F~sl~eLV~  100 (138)
T 2crh_A           21 QDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEKKAFRGLTELVE  100 (138)
T ss_dssp             SCGGGSSSBCCSCCHHHHHHHTTTSCTTEEEEECCSSTTCCCEEEEEETTEEEEEECEEETTEEESSTTCCBSSHHHHHH
T ss_pred             CCCCcCCcccCCCCHHHHHHHhcCCCCCEEEEEECCCCCCCEEEEEEECCeEEEEEEEeCCCEEEECCCCccCCHHHHHH
Confidence            45678999999999999999999989999999999988899999999999999999987888999987889999999999


Q ss_pred             HHhhCCcccCCCCcceeeccccccCCCCccc
Q psy8552         290 YYKHESLSQYNSTLDTRLLYPVSRFSSDVDA  320 (523)
Q Consensus       290 ~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~  320 (523)
                      ||+.+++...++++++.|+.||+++...++.
T Consensus       101 ~y~~~~l~~~~~~l~~~L~~Pv~~~~~~~~~  131 (138)
T 2crh_A          101 FYQQNSLKDCFKSLDTTLQFPFKEPEKRTIS  131 (138)
T ss_dssp             HHTTSCGGGTCTTCCCCCCEESSCCCCCCSS
T ss_pred             HHHhCccccccCCcCcccCCccCCCCCCCCC
Confidence            9999998776678999999999987665544

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A

Probab=99.90  E-value=7.2e-24  Score=179.98  Aligned_cols=101  Identities=28%  Similarity=0.474  Sum_probs=91.3

Q ss_pred             CCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHHHHH
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVELIN  289 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~LV~  289 (523)
                      +++.++||||.|+|++||++|.+.++|+||||+|++.+|.|+||++.+++++||+|.. .+|.|++.+...|+||.+||+
T Consensus         1 sL~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~   80 (112)
T 3k2m_A            1 SLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVH   80 (112)
T ss_dssp             CGGGSTTEEESCCHHHHHHHTTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEESSTTCCBSSHHHHHH
T ss_pred             CCccCcceeeCCCHHHHHHHhccCCCceEEEEeCCCCCCCEEEEEEeCCcEEEEEEEECCCCcEEECCCCeECCHHHHHH
Confidence            3678999999999999999999889999999999988999999999999999999997 577888887889999999999


Q ss_pred             HHhhCCcccCCCCcceeeccccccCCC
Q psy8552         290 YYKHESLSQYNSTLDTRLLYPVSRFSS  316 (523)
Q Consensus       290 ~y~~~~~~~~~~~l~~~L~~p~~~~~~  316 (523)
                      ||+.+..     ++++.|+.||++...
T Consensus        81 ~y~~~~~-----~l~~~L~~P~~~~~~  102 (112)
T 3k2m_A           81 HHSTVAD-----GLITTLHYPAPKRNK  102 (112)
T ss_dssp             HHHHCCT-----TSSSCCCEECCCC--
T ss_pred             HHhhCCC-----CCccCCCCCCCCCCC
Confidence            9999864     899999999998543

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.90  E-value=8.7e-24  Score=181.78  Aligned_cols=111  Identities=27%  Similarity=0.399  Sum_probs=96.6

Q ss_pred             cccccCCCCCCCCCCCcccc-cCCHHHHHHHhcC--CCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEec
Q psy8552         404 LSGAVASTVDFESGEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAE  478 (523)
Q Consensus       404 ~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~--~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~  478 (523)
                      .|+|++++.. .++.++||| .|+|++||.+|..  ..+|+||||.|+  +|.|+||++.+++|+||+|..+.+|.++..
T Consensus         2 ~psnyv~~~~-~l~~~~WyhG~isR~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~   80 (121)
T 2dly_A            2 SSGSSGAEDR-SLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFFLT   80 (121)
T ss_dssp             CSCCCCCSSG-GGGGCSSBCSSCCHHHHHHHHTSSSCCTTCEEEEECSSSSSCEEEEEESSSCEEEEEEEECSSSCEEEE
T ss_pred             CCcccccccc-ccCcCCccccCCCHHHHHHHHhcCCCCCCEEEEEcCCCCCCceEEEEEECCeEEEEEEEEcCCCCEEEC
Confidence            5888888765 788999999 9999999999974  469999999997  899999999999999999999665544444


Q ss_pred             CCCCCCCHHHHHHHHhhCCccccCCccceeecccccCCCCCC
Q psy8552         479 PFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGM  520 (523)
Q Consensus       479 ~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~~~~  520 (523)
                      ....|+||.+||+||++++     +|++++|++||.++.|+.
T Consensus        81 ~~~~F~sl~eLV~~y~~~~-----~~l~~~L~~P~~~~~~~~  117 (121)
T 2dly_A           81 RRKVFSTLNEFVNYYTTTS-----DGLCVKLEKPCLKIQVSG  117 (121)
T ss_dssp             TTEEESSHHHHHHHHTTCC-----SSSSSCCCSBCCCCCSSS
T ss_pred             CCCccCCHHHHHHHHhhCC-----CCCceeCCeecCCCCCCC
Confidence            4579999999999999997     789999999999987654

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*

Probab=99.90  E-value=1.1e-23  Score=185.11  Aligned_cols=117  Identities=31%  Similarity=0.444  Sum_probs=100.5

Q ss_pred             cccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECC
Q psy8552         384 ADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSG  460 (523)
Q Consensus       384 k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~  460 (523)
                      ++.+.+||.+         | |        ..+..++||| .|+|++||++|.+.++|+||||.|+  +|.|+|||+.++
T Consensus         9 ~~~~~~Ww~~---------~-p--------~~~~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~   70 (138)
T 2crh_A            9 AEAEQNWWEG---------P-P--------QDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNV   70 (138)
T ss_dssp             CCCCCCCSCC---------C-S--------SCGGGSSSBCCSCCHHHHHHHTTTSCTTEEEEECCSSTTCCCEEEEEETT
T ss_pred             cCCCCCEeee---------c-C--------CCCCcCCcccCCCCHHHHHHHhcCCCCCEEEEEECCCCCCCEEEEEEECC
Confidence            4567899985         3 2        2467789999 9999999999998889999999998  799999999999


Q ss_pred             eeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCCCCC
Q psy8552         461 APKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG  519 (523)
Q Consensus       461 ~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~~~  519 (523)
                      +|+||+|. ..+|.++......|+||.+||+||+++++...++|++++|++||.++.+.
T Consensus        71 ~v~H~~I~-~~~g~~~l~~~~~F~sl~eLV~~y~~~~l~~~~~~l~~~L~~Pv~~~~~~  128 (138)
T 2crh_A           71 EVKHIKIM-TAEGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKEPEKR  128 (138)
T ss_dssp             EEEEEECE-EETTEEESSTTCCBSSHHHHHHHHTTSCGGGTCTTCCCCCCEESSCCCCC
T ss_pred             eEEEEEEE-eCCCEEEECCCCccCCHHHHHHHHHhCccccccCCcCcccCCccCCCCCC
Confidence            99999996 55565555545799999999999999999877789999999999987554

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.90  E-value=7e-24  Score=176.21  Aligned_cols=96  Identities=31%  Similarity=0.597  Sum_probs=88.9

Q ss_pred             CCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHHHHHH
Q psy8552         214 DAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVELINY  290 (523)
Q Consensus       214 ~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~LV~~  290 (523)
                      +++||||.|+|++||++|.+  .++|+||||+|++.+|.|+||++.+++++||+|.. .+|.|++.+...|+||.+||+|
T Consensus         1 ~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~   80 (100)
T 1rja_A            1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNY   80 (100)
T ss_dssp             CCCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECSSSCEEEETTEEESSHHHHHHH
T ss_pred             CCCcccCCCCHHHHHHHHhccCCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCCcEEECCCCccCCHHHHHHH
Confidence            36899999999999999997  68999999999988899999999999999999998 5788999877899999999999


Q ss_pred             HhhCCcccCCCCcceeeccccccC
Q psy8552         291 YKHESLSQYNSTLDTRLLYPVSRF  314 (523)
Q Consensus       291 y~~~~~~~~~~~l~~~L~~p~~~~  314 (523)
                      |+.+++     ++++.|+.||++.
T Consensus        81 y~~~~~-----~l~~~L~~p~~~~   99 (100)
T 1rja_A           81 HRAQSL-----SHGLRLAAPCRKH   99 (100)
T ss_dssp             HHHCCT-----TSSSCCCSBCCCC
T ss_pred             HhhCCC-----CCCCCCCccCCCC
Confidence            999986     6899999999874

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=4.9e-24  Score=182.71  Aligned_cols=108  Identities=26%  Similarity=0.448  Sum_probs=96.5

Q ss_pred             CCcCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHH
Q psy8552         207 PETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVV  285 (523)
Q Consensus       207 ~~~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~  285 (523)
                      +....++.++||||.|+|++||++|.+.++|+||||+|++.+|.|+||++.+++++||+|.+ .+|.|++.+...|.||.
T Consensus         8 ap~~~l~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~   87 (119)
T 2ecd_A            8 TPVNSLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADGKVYVTAESRFSTLA   87 (119)
T ss_dssp             CSSCCCCCSSSEEEECCHHHHHHHHHTSCTTBEEEEEESSSTTEEEEEEECSSCEEEECCCCCSSSCCCCCSSCCCSSHH
T ss_pred             ccccccccCccccCCCCHHHHHHHhcCCCCCeEEEEeCCCCCCCEEEEEEECCeEEEEEEEEcCCCCEEEcCCCcCCCHH
Confidence            44567889999999999999999999889999999999988999999999999999999987 57788887778999999


Q ss_pred             HHHHHHhhCCcccCCCCcceeeccccccCCCCcc
Q psy8552         286 ELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVD  319 (523)
Q Consensus       286 ~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~  319 (523)
                      +||+||+.++.     ++++.|+.||++...++.
T Consensus        88 ~LV~~y~~~~~-----gl~~~L~~P~~~~~~p~~  116 (119)
T 2ecd_A           88 ELVHHHSTVAD-----GLVTTLHYPAPKCNKSGP  116 (119)
T ss_dssp             HHHHHHHHCCT-----TSSSCCCBCCSSCCSSCC
T ss_pred             HHHHHHhhCCC-----CCceECCCccCCCCCCCC
Confidence            99999999864     789999999998655443

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=178.14  Aligned_cols=106  Identities=26%  Similarity=0.329  Sum_probs=93.6

Q ss_pred             hhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcE
Q psy8552         398 KIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGF  474 (523)
Q Consensus       398 ~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~  474 (523)
                      ++.+||+|+|+++     ++.++||| .|+|++||++|++.++|+||||.|+  +|.|+||++.++.++||+|....+|.
T Consensus         3 ~g~~G~ip~n~v~-----~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~   77 (111)
T 2eo3_A            3 SGSSGMSSARFDS-----SDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRR   77 (111)
T ss_dssp             CCCCCSCSCCCCT-----TCHHHHEEESCCHHHHHHHHSSCCTTCEEEEECSSSSSCEEEEEEETTEEEEEEEEEETTTE
T ss_pred             CCccccccccccc-----cCCCCcccCCCCHHHHHHHhcCCCCceEEEEeecCCCCCEEEEEEeCCeEEEEEEEEcCCCC
Confidence            4678999999973     56789999 9999999999998889999999998  89999999999999999999966665


Q ss_pred             EEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccC
Q psy8552         475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       475 ~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      ++.+ ...|+||.+||+||+++++.      +++|++||++
T Consensus        78 ~~l~-~~~F~sl~~LV~~y~~~~l~------~~~L~~Pv~r  111 (111)
T 2eo3_A           78 FKIG-DQEFDHLPALLEFYKIHYLD------TTTLIEPAPR  111 (111)
T ss_dssp             EEET-TCCBSSHHHHHHHHTTSCSS------SSCCCCBCCC
T ss_pred             EEEC-CcccCCHHHHHHHHhhCCCC------CccCCCcCcC
Confidence            5555 47999999999999999743      6899999975

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*

Probab=99.90  E-value=1.1e-23  Score=176.33  Aligned_cols=97  Identities=24%  Similarity=0.405  Sum_probs=87.3

Q ss_pred             CCCCCccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCC-----CCccCCH
Q psy8552         212 LRDAEWYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSE-----PFKFTSV  284 (523)
Q Consensus       212 l~~~~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~-----~~~F~sl  284 (523)
                      ++.++||||.|+|++||++|.. .++|+||||+|++.+|.|+||++.+++++||+|.. .+|.|++.+     ...|+||
T Consensus         1 l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl   80 (104)
T 1d4t_A            1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKI   80 (104)
T ss_dssp             CTTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEECBCTTSCCCCBSSH
T ss_pred             CCCCceEccCCCHHHHHHHHHhcCCCCEEEEeeCCCCCCCEEEEEEECCeEEEEEEEECCCCeEEEeccCCCCCcccCCH
Confidence            4678999999999999999974 37999999999988999999999999999999996 567888874     6889999


Q ss_pred             HHHHHHHhhCCcccCCCCcceeecccccc
Q psy8552         285 VELINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       285 ~~LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      .+||+||+.++.     ++++.|+.||++
T Consensus        81 ~~LV~~y~~~~~-----~l~~~L~~P~~r  104 (104)
T 1d4t_A           81 KNLISAFQKPDQ-----GIVIPLQYPVEK  104 (104)
T ss_dssp             HHHHHHHTSSSS-----SSSSCCCEECCC
T ss_pred             HHHHHHHhhCCC-----CCeEECCCcCCC
Confidence            999999999874     789999999975

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*

Probab=99.90  E-value=1.8e-23  Score=175.52  Aligned_cols=97  Identities=31%  Similarity=0.575  Sum_probs=88.0

Q ss_pred             CCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEE-----CCeeEEEEEEE-eCCeEEeCCCCccCC
Q psy8552         212 LRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRK-----GGTNKLIKIFH-RNGRYGFSEPFKFTS  283 (523)
Q Consensus       212 l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~-----~~~v~h~~I~~-~~~~~~~~~~~~F~s  283 (523)
                      ++.++||||.|+|++||++|..  .++|+||||+|++.+|.|+||++.     ++.++||+|.. .+|+|++.+...|+|
T Consensus         1 l~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   80 (105)
T 1lkk_A            1 LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPG   80 (105)
T ss_dssp             CCCCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSCBSS
T ss_pred             CCcCceecCCCCHHHHHHHHHhcCCCCceEEEEECCCCCCcEEEEEEEcccCCCCcEEEEEEEECCCCCEEECCCceeCC
Confidence            4678999999999999999985  589999999999889999999998     68999999997 478899987789999


Q ss_pred             HHHHHHHHhhCCcccCCCCcceeecccccc
Q psy8552         284 VVELINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       284 l~~LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      |.+||+||+.++.     ++++.|+.||++
T Consensus        81 l~~LI~~y~~~~~-----~l~~~L~~P~~~  105 (105)
T 1lkk_A           81 LHELVRHYTNASD-----GLCTRLSRPCQT  105 (105)
T ss_dssp             HHHHHHHHHHCCT-----TSSSCCCSBCCC
T ss_pred             HHHHHHHHhhCCC-----CCccCCcCcCCC
Confidence            9999999999875     789999999974

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.90  E-value=1.6e-23  Score=180.21  Aligned_cols=103  Identities=26%  Similarity=0.541  Sum_probs=93.5

Q ss_pred             CCCCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHH
Q psy8552         210 NSLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVE  286 (523)
Q Consensus       210 ~~l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~  286 (523)
                      ..++.++||||.|+|++||++|.+  .++|+||||+|++.+|.|+||++.+++++||+|.. .+|+|++.+...|+||.+
T Consensus        11 ~~l~~~~WyhG~isR~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~e   90 (121)
T 2dly_A           11 RSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFFLTRRKVFSTLNE   90 (121)
T ss_dssp             GGGGGCSSBCSSCCHHHHHHHHTSSSCCTTCEEEEECSSSSSCEEEEEESSSCEEEEEEEECSSSCEEEETTEEESSHHH
T ss_pred             cccCcCCccccCCCHHHHHHHHhcCCCCCCEEEEEcCCCCCCceEEEEEECCeEEEEEEEEcCCCCEEECCCCccCCHHH
Confidence            567889999999999999999985  48999999999988999999999999999999998 678899987789999999


Q ss_pred             HHHHHhhCCcccCCCCcceeeccccccCCCC
Q psy8552         287 LINYYKHESLSQYNSTLDTRLLYPVSRFSSD  317 (523)
Q Consensus       287 LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~  317 (523)
                      ||+||+.+++     ++++.|+.||++....
T Consensus        91 LV~~y~~~~~-----~l~~~L~~P~~~~~~~  116 (121)
T 2dly_A           91 FVNYYTTTSD-----GLCVKLEKPCLKIQVS  116 (121)
T ss_dssp             HHHHHTTCCS-----SSSSCCCSBCCCCCSS
T ss_pred             HHHHHhhCCC-----CCceeCCeecCCCCCC
Confidence            9999999985     7899999999986543

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A*

Probab=99.90  E-value=8.1e-24  Score=177.02  Aligned_cols=102  Identities=30%  Similarity=0.495  Sum_probs=91.6

Q ss_pred             CCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHH
Q psy8552         210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELIN  289 (523)
Q Consensus       210 ~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~  289 (523)
                      .+++.++||||.|+|++||++|..  +|+||||+|++.+|.|+||++.+++++||+|...+|.|.+. +..|+||.+||+
T Consensus         2 ~~l~~~~Wyhg~isR~~Ae~lL~~--~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~g~~~~~-~~~F~sl~~LI~   78 (104)
T 1mil_A            2 SQLRGEPWFHGKLSRREAEALLQL--NGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTK-DHRFESVSHLIS   78 (104)
T ss_dssp             CSTTTCTTBCSSCCHHHHHTTCCS--TTEEEEEECCSSCSSEEEEEEETTEEEEEEEBCTTSSEECS-SCEESSHHHHHH
T ss_pred             CccccCCcCCCCCCHHHHHHHhcc--CCcEEEEeCCCCCCCEEEEEEECCEEEEEEEEeCCCEEEEC-CceeCCHHHHHH
Confidence            357889999999999999999984  99999999998899999999999999999997667778765 589999999999


Q ss_pred             HHhhCCcccCCCCcceeeccccccC
Q psy8552         290 YYKHESLSQYNSTLDTRLLYPVSRF  314 (523)
Q Consensus       290 ~y~~~~~~~~~~~l~~~L~~p~~~~  314 (523)
                      ||+.++++....++.+.|+.||+++
T Consensus        79 ~y~~~~~p~~~~g~~~~L~~Pv~r~  103 (104)
T 1mil_A           79 YHMDNHLPIISAGSELCLQQPVERK  103 (104)
T ss_dssp             HHHHHTCCEEETTEEECCCEECCCC
T ss_pred             HHhhCCCccccCCceEEeCccCCCC
Confidence            9999987665568889999999974

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.89  E-value=3.5e-23  Score=177.54  Aligned_cols=103  Identities=27%  Similarity=0.429  Sum_probs=92.8

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCC-----CCcc
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSE-----PFKF  281 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~-----~~~F  281 (523)
                      ..+++.++||||.|+|++||++|.+ .++|+||||+|++.+|.|+|||+.++.++||+|.+ .+|.|++.+     ...|
T Consensus         4 ~~~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F   83 (119)
T 2ysx_A            4 GSSGMVPCWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQASEGVSMRFF   83 (119)
T ss_dssp             CCSSCCCSSEEESCCHHHHHHHHHHHCCTTEEEEEECSSCTTSEEEEEECSSCEEEEEEEECTTSCEEECCSCSSSCCCB
T ss_pred             ccCCCCCccccCCCCHHHHHHHHhhcCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeccCCcCCccc
Confidence            4667889999999999999999986 78999999999988999999999999999999997 578899875     4789


Q ss_pred             CCHHHHHHHHhhCCcccCCCCcceeeccccccCCC
Q psy8552         282 TSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSS  316 (523)
Q Consensus       282 ~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~  316 (523)
                      .||.+||+||+.+++     ++++.|+.||++...
T Consensus        84 ~sl~eLV~~y~~~~~-----~l~~~L~~P~~~~~~  113 (119)
T 2ysx_A           84 TKLDQLIEFYKKENM-----GLVTHLQYPVPLEEE  113 (119)
T ss_dssp             SSHHHHHHHTTSSSS-----SSSSCCCEECCCCCC
T ss_pred             CCHHHHHHHHhhCCC-----CCCeECCCcCCCCCC
Confidence            999999999999885     789999999998544

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=1.2e-23  Score=180.18  Aligned_cols=109  Identities=31%  Similarity=0.455  Sum_probs=95.4

Q ss_pred             ccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCC
Q psy8552         405 SGAVASTVDFESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFN  481 (523)
Q Consensus       405 p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~  481 (523)
                      |.+++++.. .++.++||| .|+|++||.+|.+..+|+||||.|+  +|.|+||++.+++|+||+|..+.+|.++.....
T Consensus         3 ~~~~vap~~-~l~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~   81 (119)
T 2ecd_A            3 SGSSGTPVN-SLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADGKVYVTAES   81 (119)
T ss_dssp             CCCCCCSSC-CCCCSSSEEEECCHHHHHHHHHTSCTTBEEEEEESSSTTEEEEEEECSSCEEEECCCCCSSSCCCCCSSC
T ss_pred             CCccccccc-ccccCccccCCCCHHHHHHHhcCCCCCeEEEEeCCCCCCCEEEEEEECCeEEEEEEEEcCCCCEEEcCCC
Confidence            345666666 788999999 9999999999987789999999998  899999999999999999998766655555567


Q ss_pred             CCCCHHHHHHHHhhCCccccCCccceeecccccCCCCC
Q psy8552         482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG  519 (523)
Q Consensus       482 ~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~~~  519 (523)
                      .|+||.+||+||++++     +|++++|++||+++.++
T Consensus        82 ~F~sl~~LV~~y~~~~-----~gl~~~L~~P~~~~~~p  114 (119)
T 2ecd_A           82 RFSTLAELVHHHSTVA-----DGLVTTLHYPAPKCNKS  114 (119)
T ss_dssp             CCSSHHHHHHHHHHCC-----TTSSSCCCBCCSSCCSS
T ss_pred             cCCCHHHHHHHHhhCC-----CCCceECCCccCCCCCC
Confidence            9999999999999985     89999999999987443

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A

Probab=99.89  E-value=2.6e-23  Score=177.12  Aligned_cols=101  Identities=27%  Similarity=0.536  Sum_probs=91.6

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEE----CCeeEEEEEEEe-CCeEEeCCCCcc
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRK----GGTNKLIKIFHR-NGRYGFSEPFKF  281 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~----~~~v~h~~I~~~-~~~~~~~~~~~F  281 (523)
                      ...++.++||||.|+|++||++|..  .++|+||||+|++.+|.|+||++.    ++.++||+|... +|+|++.+...|
T Consensus         6 ~~~l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F   85 (114)
T 1blj_A            6 VETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITF   85 (114)
T ss_dssp             SCCSCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETTTEEEEETTEEE
T ss_pred             cCccccCCccCCCCCHHHHHHHHhhCCCCCceEEEEeCCCCCCCEEEEEEEecCCCCcEEEEEEEEcCCCCEEECCCccc
Confidence            4567889999999999999999985  589999999999889999999998    689999999984 788999877899


Q ss_pred             CCHHHHHHHHhhCCcccCCCCcceeeccccccC
Q psy8552         282 TSVVELINYYKHESLSQYNSTLDTRLLYPVSRF  314 (523)
Q Consensus       282 ~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~  314 (523)
                      +||.+||+||+.++.     ++++.|+.||+++
T Consensus        86 ~sl~~LV~~y~~~~~-----~l~~~L~~p~~~~  113 (114)
T 1blj_A           86 PTLQALVQHYSKKGD-----GLCQKLTLPCVNL  113 (114)
T ss_dssp             SSHHHHHHHHHHCCS-----SSSSCCCCCSCCC
T ss_pred             CCHHHHHHHhhhCCC-----CCceecCccCCCC
Confidence            999999999999875     7899999999874

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A

Probab=99.89  E-value=2.5e-23  Score=175.75  Aligned_cols=104  Identities=25%  Similarity=0.469  Sum_probs=88.6

Q ss_pred             CCCCCCccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHH
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELIN  289 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~  289 (523)
                      .++.++||||.|+|++||++|.. .++|+||||+|++.+|.|+||++.+++++||+|...++.|.+.+...|+||.+||+
T Consensus         3 ~l~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~LV~   82 (109)
T 3tkz_A            3 HMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQ   82 (109)
T ss_dssp             ----CCSBCTTCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECSSCEESSSSCCBSSHHHHHH
T ss_pred             ccccCCceecCCCHHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEeCCCEEEecCCcccCCHHHHHH
Confidence            36779999999999999999986 38999999999988999999999999999999998777787877889999999999


Q ss_pred             HHhhCCccc-CCCCcceeeccccccC
Q psy8552         290 YYKHESLSQ-YNSTLDTRLLYPVSRF  314 (523)
Q Consensus       290 ~y~~~~~~~-~~~~l~~~L~~p~~~~  314 (523)
                      ||+.+++.. .++++.+.|+.||+++
T Consensus        83 ~y~~~~~~l~~~~gl~~~L~~Pv~~~  108 (109)
T 3tkz_A           83 YYMEHHGQLKEKNGDVIELKYPLNCA  108 (109)
T ss_dssp             HHHHSTTSEEETTSCBCCCCEECC--
T ss_pred             HHHhCcCccccCCCceEECCCcccCC
Confidence            999988543 2468889999999863

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.89  E-value=7.3e-23  Score=175.39  Aligned_cols=108  Identities=24%  Similarity=0.397  Sum_probs=93.9

Q ss_pred             CCCCcCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEe-CCeEEeC-CCCccC
Q psy8552         205 SGPETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NGRYGFS-EPFKFT  282 (523)
Q Consensus       205 ~~~~~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~-~~~~~~~-~~~~F~  282 (523)
                      ++.....+..++||||.|+|++||++|.+.++|+||||+|++.+| |+||++.+++++||+|... +|+|++. ....|+
T Consensus         6 s~~~~~~~~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~~-y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~~F~   84 (119)
T 2cs0_A            6 SGGQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHT   84 (119)
T ss_dssp             CCSCCCSSSCCSSBCSSCCHHHHHHHHHTSCTTCEEEEECSSSSS-EEEEECCSSSCEEEEEEECTTSCEECTTCSCCBS
T ss_pred             ChhhhccccCCCccccCCCHHHHHHHhcCCCCCEEEEEecCCCCC-EEEEEEECCEEEEEEEEEcCCCcEEEecCCCcCC
Confidence            345567788899999999999999999988999999999998888 9999999999999999974 6789886 468899


Q ss_pred             CHHHHHHHHhhCCcccCCCCcceeeccccccCCCC
Q psy8552         283 SVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSD  317 (523)
Q Consensus       283 sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~  317 (523)
                      ||.+||+||+.+++..    .++.|+.||++..+.
T Consensus        85 sl~eLV~~y~~~~l~~----~~~~L~~P~~~~~p~  115 (119)
T 2cs0_A           85 SLDALVTFHQQKPIEP----RRELLTQPCRQKDSG  115 (119)
T ss_dssp             SHHHHHHHHTTSCCSS----CCCCCCSBCCCSSCC
T ss_pred             CHHHHHHHHhhCcCCC----CCCEeCccCCCCCCC
Confidence            9999999999988742    358899999986443

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*

Probab=99.89  E-value=2.7e-23  Score=173.23  Aligned_cols=99  Identities=23%  Similarity=0.510  Sum_probs=88.3

Q ss_pred             CCCCccccCCCHHHHHHHhc-CCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHHHH
Q psy8552         213 RDAEWYWGDISRDDVNDKLA-DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYY  291 (523)
Q Consensus       213 ~~~~wyhg~isr~~Ae~lL~-~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~y  291 (523)
                      +.++||||.|+|++||++|+ ..++|+||||+|++.+|.|+||++.+++++||+|...+|.|++.+ ..|+||.+||+||
T Consensus         3 ~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~g~~~l~~-~~F~sl~~LV~~y   81 (102)
T 2cia_A            3 LGSEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQ-RRFHTMDELVEHY   81 (102)
T ss_dssp             --CTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEECCSSSCEEEEEEEETTEEEETT-EEESSHHHHHHHH
T ss_pred             cCCccccCCCCHHHHHHHHhhCCCCcEEEEEECCCCCCCEEEEEEeCCeeEEEEEEecCCEEEECC-cCcCCHHHHHHHH
Confidence            56899999999999999995 468999999999988999999999999999999998899999976 7999999999999


Q ss_pred             hhCCcccCCCCcceeeccccc
Q psy8552         292 KHESLSQYNSTLDTRLLYPVS  312 (523)
Q Consensus       292 ~~~~~~~~~~~l~~~L~~p~~  312 (523)
                      +.+++...+.+..+.|++|++
T Consensus        82 ~~~~l~~~~~~~~~~L~~Pip  102 (102)
T 2cia_A           82 KKAPIFTSEHGEKLYLVRALQ  102 (102)
T ss_dssp             HHSCSEECTTSCEECCCEECC
T ss_pred             hhCccccCCCCceEEeCCCCC
Confidence            999886644577889999875

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=3.9e-23  Score=176.82  Aligned_cols=104  Identities=34%  Similarity=0.503  Sum_probs=94.0

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  491 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~  491 (523)
                      .+..++||| .|+|++||++|.+.++|+||||.|+  +|.|+||++.++.|+||+|...++++++ .....|+||.+||+
T Consensus        12 ~l~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~g~~~l-~~~~~F~sl~~LV~   90 (118)
T 2dlz_A           12 DYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHI-TEAKKFDSLLELVE   90 (118)
T ss_dssp             CGGGSTTEEESCCHHHHHHHHHHSCTTBEEEECCSCSSCCEEEEEECSSSEEEEEEEEETTEEES-TTSCCBSSHHHHHH
T ss_pred             ccccCCceecCCCHHHHHHHhcCCCCCEEEEEeCCCCCCCEEEEEEECCcEEEEEEEEcCCEEEE-eCCcccCCHHHHHH
Confidence            588899999 9999999999987789999999998  8999999999999999999997655555 44479999999999


Q ss_pred             HHhhCCccccCCccceeecccccCCCCC
Q psy8552         492 HYAANSLEEHNDDLKTTLAYPVFAPASG  519 (523)
Q Consensus       492 ~y~~~~l~~~~~~l~~~L~~pv~~~~~~  519 (523)
                      ||+.+++...++|++++|++||+++.|+
T Consensus        91 ~y~~~~l~~~~~gl~~~L~~Pv~~p~~g  118 (118)
T 2dlz_A           91 YYQCHSLKESFKQLDTTLKYPYSGPSSG  118 (118)
T ss_dssp             HHTTSCTTTTCTTCCCCCCBCCSCCCCC
T ss_pred             HHhhCcccccCCCcccEeCCcCCCCCCC
Confidence            9999998877779999999999999875

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.89  E-value=7.9e-24  Score=202.93  Aligned_cols=164  Identities=21%  Similarity=0.268  Sum_probs=121.5

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeC------------------
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRN------------------  270 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~------------------  270 (523)
                      ..+++.++||||.|+|++||++|.+.++|+||||+|++.+|.|+||++.+++++||+|.+.+                  
T Consensus         7 ~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~g~~~   86 (230)
T 2dvj_A            7 FDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSP   86 (230)
T ss_dssp             CCSSSSSSSCCSSCCTTHHHHHHTTSSSSCBEEECCSSCTTSCEEECCCSSSCCCEECBCCCSCCSSSSSSSSTTTSCCC
T ss_pred             cccccCCCcccCCCCHHHHHHHhcCCCCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEeCCCCcccccccccccccccc
Confidence            45688899999999999999999988999999999999899999999999999999998743                  


Q ss_pred             CeEEeCCCCccCCHHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCccccccc-ccCccchhHH
Q psy8552         271 GRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTF-SEPFKFTSVV  349 (523)
Q Consensus       271 ~~~~~~~~~~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~  349 (523)
                      +.|.+ +...|.||.+||+||+.+.+.      ++.|+.||++.....          .+.+......+ ...|..+   
T Consensus        87 ~~~~~-~~~~F~sl~~LV~~y~~~~l~------~~~L~~Pv~~~~~~s----------~~~L~~~~~~~~~al~dy~---  146 (230)
T 2dvj_A           87 SRLRI-GDQEFDSLPALLEFYKIHYLD------TTTLIEPVSRSRQGS----------GVILRQEEAEYVRALFDFN---  146 (230)
T ss_dssp             CCEES-SSCEESSHHHHHTTSTTTCSS------SSCCCCBCCSCCCCC----------CCCCSCCCCCCCBCCSCCC---
T ss_pred             eEEEe-CCceeCCHHHHHHHHhhCccc------ccccccccccccccc----------ccccCcccceeEEEeeeec---
Confidence            35666 468999999999999998862      578999998754211          11222211111 1122221   


Q ss_pred             HHHHhhcccchhhhhhhhchhccccc--c-ccccccccccccchhHHHhhhhhcccccccccCCCC
Q psy8552         350 ELINYYKHESLSQYNSTLDTRLLYPV--S-RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTV  412 (523)
Q Consensus       350 ~avk~~~~~~l~~~~~e~~ar~m~~l--~-~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~  412 (523)
                                         |+.-..|  . .+++.+++..+.+||.++.. .+..|++|+++++..
T Consensus       147 -------------------~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~  192 (230)
T 2dvj_A          147 -------------------GNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-EGKRGMIPVPYVEKY  192 (230)
T ss_dssp             -------------------CSSSSSCCCCSSCBCCCCBCSCSSEEEEECT-TSCEEEEEGGGSCCC
T ss_pred             -------------------CCCCCCccCcCCCEEEEEEccCCCcEEEEeC-CCCEEEEehHHeEEc
Confidence                               1111223  2 67888877778899999843 468999999997643

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.89  E-value=3e-23  Score=188.97  Aligned_cols=136  Identities=25%  Similarity=0.501  Sum_probs=110.7

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCC-------Ccc
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEP-------FKF  281 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~-------~~F  281 (523)
                      ...++.++||||.|+|++||++|.+.++|+||||+|++.+|.|+||++.+++++||+|...+|+|++.+.       ..|
T Consensus        11 ~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~rI~~~~g~~~l~~~~~~~~~~~~F   90 (169)
T 2c9w_A           11 LRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIICVKSKLKQF   90 (169)
T ss_dssp             HHHHHHTSCBCTTCCHHHHHHHHTTSCTTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEETTEEEECTTTTTGGGCCCB
T ss_pred             HHhcccCCccccCCCHHHHHHHcCCCCCcEEEEecCCCCCCeEEEEEEECCeeEEEEEEEeCCEEEEccccCccccCCCC
Confidence            3457789999999999999999998899999999999889999999999999999999999999999874       789


Q ss_pred             CCHHHHHHHHhhCCccc-------CCCCcceeeccccccCCCCccc----c--cCCCCcCCCCCcccccccccCcc
Q psy8552         282 TSVVELINYYKHESLSQ-------YNSTLDTRLLYPVSRFSSDVDA----D--IHSNDVDKNPAPGVLRTFSEPFK  344 (523)
Q Consensus       282 ~sl~~LV~~y~~~~~~~-------~~~~l~~~L~~p~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~  344 (523)
                      +||.+||+||+.+++..       ...++++.|++|+.+..+....    .  ...+.++.+++|..+++|+.+|.
T Consensus        91 ~sl~eLI~~y~~~~~~~~~~~~~~~~~~~~~~L~~P~~~~~~sLqhlcR~~i~~~~~~~~~lplp~~l~~yl~~y~  166 (169)
T 2c9w_A           91 DSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKPLYTSAPSLQHLCRLTINKCTGAIWGLPLPTRLKDYLEEYK  166 (169)
T ss_dssp             SCHHHHHHHHHHHTC--------------CCCCCCBCCSSCCCHHHHHHHHHHHHCSCGGGSSSCHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHhCcCCCcccccCCCCcCccceecCccccccccHHHHHHHHHHHhhcchhhCCCCHHHHHHHHhCC
Confidence            99999999999887641       1246789999999984443111    0  12367788999999999977764

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1

Probab=99.89  E-value=3.7e-23  Score=172.87  Aligned_cols=95  Identities=25%  Similarity=0.440  Sum_probs=85.7

Q ss_pred             CCCccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCC-----CCccCCHHH
Q psy8552         214 DAEWYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSE-----PFKFTSVVE  286 (523)
Q Consensus       214 ~~~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~-----~~~F~sl~~  286 (523)
                      .++||||.|+|++||++|.+ .++|+||||+|++.+|.|+||++.+++++||+|.. .+|.|++.+     ...|+||.+
T Consensus         2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl~~   81 (103)
T 1i3z_A            2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIFPNLQE   81 (103)
T ss_dssp             CCTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECTTSCEEECBCTTSCCCEESSSHH
T ss_pred             CCccccCCCCHHHHHHHHhhcCCCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEECCCCeEEEeccCCCCCcccCCHHH
Confidence            57999999999999999985 58999999999988999999999999999999996 578898873     688999999


Q ss_pred             HHHHHhhCCcccCCCCcceeecccccc
Q psy8552         287 LINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       287 LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      ||+||+.++.     ++++.|+.||+|
T Consensus        82 LV~~y~~~~~-----~l~~~L~~P~~R  103 (103)
T 1i3z_A           82 LVSKYGKPGQ-----GLVVHLSNPIMR  103 (103)
T ss_dssp             HHHHTTSSSS-----SSSSCCCEECC-
T ss_pred             HHHHHhhCCC-----CCeEEcCCccCC
Confidence            9999998864     789999999975

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=4.3e-23  Score=176.71  Aligned_cols=108  Identities=24%  Similarity=0.407  Sum_probs=94.5

Q ss_pred             CCCCcCCCCCCCccccCCCHHHHHHHhcCC-CCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccC
Q psy8552         205 SGPETNSLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFT  282 (523)
Q Consensus       205 ~~~~~~~l~~~~wyhg~isr~~Ae~lL~~~-~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~  282 (523)
                      +.+....++.++||||.|+|++||++|++. ++|+||||+|++.+|.|+||++.+++++||+|.. .+|.|++.+ ..|.
T Consensus         6 ~~~~~~~l~~~~WyhG~isR~~Ae~lL~~~g~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~-~~F~   84 (119)
T 2gsb_A            6 SGREEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGG-RYYN   84 (119)
T ss_dssp             CSSCCCSGGGCSSBCCSSCHHHHHHHHHHTCCSSEEEEEECSSSTTCEEEEEECSSCBCCCCEEEETTTEEEESS-CCBS
T ss_pred             CCCCCcccccCCcccCCCCHHHHHHHHhhcCCCCeEEEEeCCCCCCceEEEEEECCEEEEEEEEEcCCCCEEECC-cccC
Confidence            345567789999999999999999999864 7899999999998999999999999999999997 477888864 7899


Q ss_pred             CHHHHHHHHhhCCcccCCCCcceeeccccccCCCCc
Q psy8552         283 SVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDV  318 (523)
Q Consensus       283 sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~  318 (523)
                      ||.+||+||+.+++     ++++.|+.||++.....
T Consensus        85 sl~~LI~~y~~~~l-----~~~~~L~~Pv~~~~~~~  115 (119)
T 2gsb_A           85 SIGDIIDHYRKEQI-----VEGYYLKEPVPMQDQSG  115 (119)
T ss_dssp             CHHHHHHHHTTSCS-----BTTBCCCCCCCCCCCCS
T ss_pred             CHHHHHHHHhhCcc-----CCCCEeCCccCCCCCCC
Confidence            99999999999886     46789999999865443

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A

Probab=99.89  E-value=4.1e-23  Score=176.75  Aligned_cols=101  Identities=25%  Similarity=0.399  Sum_probs=85.6

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE--eCCeEEe--C-CCCcc
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH--RNGRYGF--S-EPFKF  281 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~--~~~~~~~--~-~~~~F  281 (523)
                      ...++.++||||.|+|++||++|..  .++|+||||+|++.+|.|+||++.+++++||+|..  .+|.|++  . +...|
T Consensus         8 ~~~~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~~F   87 (117)
T 3pqz_A            8 AAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRF   87 (117)
T ss_dssp             -CGGGGCTTBCCSCCHHHHHHHHHHTTCCTTEEEEEECCC-CCCEEEEEEETTEEEEEEEEEECCTTCCEEESSTTSSCB
T ss_pred             hhhcccCccccCCCCHHHHHHHHhcCCCCCCEEEEEecCCCCCcEEEEEEeCCeeEEEEEEEecCCCCEEEEECCCCccc
Confidence            4556789999999999999999975  57999999999998899999999999999999997  3565443  3 35789


Q ss_pred             CCHHHHHHHHhhCCcccCCCCcceeeccccccC
Q psy8552         282 TSVVELINYYKHESLSQYNSTLDTRLLYPVSRF  314 (523)
Q Consensus       282 ~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~  314 (523)
                      +||.+||+||+.+++     ++++.|+.||++.
T Consensus        88 ~sl~~LV~~y~~~~~-----~l~~~L~~P~~~~  115 (117)
T 3pqz_A           88 TDLLQLVEFHQLNRG-----ILPCLLRHCCTRV  115 (117)
T ss_dssp             SSHHHHHHHHHHCCT-----TSSSCCCEECC--
T ss_pred             CCHHHHHHHHhhCCC-----CCcEECCCcCccc
Confidence            999999999999885     7899999999874

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A

Probab=99.89  E-value=6.1e-23  Score=169.93  Aligned_cols=94  Identities=23%  Similarity=0.351  Sum_probs=85.5

Q ss_pred             CCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHH
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  492 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~  492 (523)
                      ++.++||| .|+|++||++|++.++|+||||.|+  +|.|+||++.++.++||+|...++++++. ....|+||.+||+|
T Consensus         2 L~~~~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~-~~~~F~sl~~Lv~~   80 (98)
T 3us4_A            2 LSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID-EAVFFCNLMDMVEH   80 (98)
T ss_dssp             CTTCTTBCCSCCHHHHHHHTCSCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEETTEEESS-SSSEESSHHHHHHH
T ss_pred             CccCcccCCCCCHHHHHHHccCCCCcEEEEEeCCCCCCcEEEEEEECCceEEEEEEEeCCEEEEC-CCCccCCHHHHHHH
Confidence            67789999 9999999999998889999999997  89999999999999999999976655554 45799999999999


Q ss_pred             HhhCCccccCCccceeecccccC
Q psy8552         493 YAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       493 y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      |++++     +|++++|++||+|
T Consensus        81 y~~~~-----~~l~~~L~~P~pk   98 (98)
T 3us4_A           81 YSKDK-----GAICTKLVRPKRK   98 (98)
T ss_dssp             HHHCC-----TTSSSCCCSBCCC
T ss_pred             hhhCC-----CCCeEcCCccCCC
Confidence            99996     8999999999975

>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A

Probab=99.89  E-value=6.2e-23  Score=176.36  Aligned_cols=102  Identities=32%  Similarity=0.469  Sum_probs=93.5

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  491 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~  491 (523)
                      +++.++||| .|+|++||++|.+.++|+||||.|+  +|.|+||++.+++++||+|...++++++.+ ...|+||.+||+
T Consensus        18 ~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~l~~-~~~F~sl~eLV~   96 (122)
T 2lnw_A           18 DYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITE-AKKFDSLLELVE   96 (122)
T ss_dssp             CSTTSTTBCCSCCHHHHHHHHHHSCTTBEEEEECCCSSEEEEEEEECSSCEEEEEEEEETTEEESSS-SCCBSSHHHHHH
T ss_pred             CcccCcCCCcCCCHHHHHHHhcCCCCCeEEEEeCCCCCCcEEEEEEeCCcEEEEEEEEcCCEEEECC-CCeECCHHHHHH
Confidence            588999999 9999999999987789999999998  889999999999999999998877666654 589999999999


Q ss_pred             HHhhCCccccCCccceeecccccCCC
Q psy8552         492 HYAANSLEEHNDDLKTTLAYPVFAPA  517 (523)
Q Consensus       492 ~y~~~~l~~~~~~l~~~L~~pv~~~~  517 (523)
                      ||+.++|...++|+.++|++||+++.
T Consensus        97 ~y~~~~l~~~~~~l~~~L~~P~~~pE  122 (122)
T 2lnw_A           97 YYQCHSLKESFKQLDTTLKYPYKSRE  122 (122)
T ss_dssp             HHHHSCGGGTCTTCCCCCCBCSSSCC
T ss_pred             HHhhCcCcccCCCcCeeeCCcCCCCC
Confidence            99999999888999999999998763

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A

Probab=99.88  E-value=8.7e-23  Score=173.29  Aligned_cols=96  Identities=31%  Similarity=0.444  Sum_probs=88.3

Q ss_pred             CCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHH
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  492 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~  492 (523)
                      ++.++||| .|+|++||++|++.++|+||||.|+  +|.|+||++.+++++||+|....+|.++......|+||.+||+|
T Consensus         2 L~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~   81 (112)
T 3k2m_A            2 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHH   81 (112)
T ss_dssp             GGGSTTEEESCCHHHHHHHTTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEESSTTCCBSSHHHHHHH
T ss_pred             CccCcceeeCCCHHHHHHHhccCCCceEEEEeCCCCCCCEEEEEEeCCcEEEEEEEECCCCcEEECCCCeECCHHHHHHH
Confidence            56789999 9999999999988789999999997  99999999999999999999987777776666899999999999


Q ss_pred             HhhCCccccCCccceeecccccCC
Q psy8552         493 YAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       493 y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      |+.++     +|++++|++||++.
T Consensus        82 y~~~~-----~~l~~~L~~P~~~~  100 (112)
T 3k2m_A           82 HSTVA-----DGLITTLHYPAPKR  100 (112)
T ss_dssp             HHHCC-----TTSSSCCCEECCCC
T ss_pred             HhhCC-----CCCccCCCCCCCCC
Confidence            99985     99999999999884

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*

Probab=99.88  E-value=1.8e-23  Score=175.80  Aligned_cols=98  Identities=33%  Similarity=0.666  Sum_probs=88.7

Q ss_pred             CCCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEE-----CCeeEEEEEEEe-CCeEEeCCCCccC
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRK-----GGTNKLIKIFHR-NGRYGFSEPFKFT  282 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~-----~~~v~h~~I~~~-~~~~~~~~~~~F~  282 (523)
                      +++.++||||.|+|++||++|..  .++|+||||+|++.+|.|+||++.     ++.++||+|... +|+|++.+...|+
T Consensus         1 sl~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~   80 (106)
T 1aot_F            1 SIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFE   80 (106)
T ss_dssp             CCCSSSSCCBSCCHHHHHHHHHTTTCCTTEECCBCBSSSSSBBCCEEECCBTTTBCCEEECCBEEETTTEEEEETTEEES
T ss_pred             CCccCccCCCCCCHHHHHHHHhhCCCCCcEEEEEeCCCCCCCEEEEEEecccCCCCcEEEEEEEEeCCCCEEECCCCccC
Confidence            46789999999999999999975  489999999999889999999996     789999999974 7889998778999


Q ss_pred             CHHHHHHHHhhCCcccCCCCcceeecccccc
Q psy8552         283 SVVELINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       283 sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      ||.+||+||+.+..     ++++.|+.||++
T Consensus        81 sl~~LV~~y~~~~~-----~l~~~L~~p~~~  106 (106)
T 1aot_F           81 TLQQLVQHYSERAA-----GLSSRLVVPSHK  106 (106)
T ss_dssp             SHHHHHHHHTTCCT-----TSSSCSCSSCCC
T ss_pred             CHHHHHHHhccCCC-----CCcEeecccCCC
Confidence            99999999999874     789999999975

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.88  E-value=2.4e-23  Score=191.13  Aligned_cols=152  Identities=19%  Similarity=0.252  Sum_probs=115.3

Q ss_pred             CcCCCCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEECCe---eEEEEEEE---e-C----CeEE
Q psy8552         208 ETNSLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGT---NKLIKIFH---R-N----GRYG  274 (523)
Q Consensus       208 ~~~~l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~~~---v~h~~I~~---~-~----~~~~  274 (523)
                      ..+.++.++||||.|+|++||++|++  .++|+||||+| +.+|.|+||++.+++   ++||+|.+   . +    |.|+
T Consensus         5 ~~~~l~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~~~~~   83 (174)
T 3qwx_X            5 GFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVK   83 (174)
T ss_dssp             CSCGGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEEC-SSTTCEEEEEECCSSSSCEEEEEEEECCCCTTSSSCCCEE
T ss_pred             ccCccccCCCccCCCCHHHHHHHHhccCCCCCeEEEEec-CCCCCEEEEEEECCCCCceEEEEEEeccCCCCCcccceEE
Confidence            35678889999999999999999986  57899999999 779999999999999   99999987   3 3    4788


Q ss_pred             eCCCCccCCHHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHh
Q psy8552         275 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINY  354 (523)
Q Consensus       275 ~~~~~~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~  354 (523)
                      +. ...|+||.+||+||+.++.      +.+.|..|++++......                    ..|..+        
T Consensus        84 ~~-~~~F~sl~eLv~~y~~~~~------~~~~L~~P~~~p~~~~~~--------------------alydy~--------  128 (174)
T 3qwx_X           84 IA-NQSFPDIPALLNHFKMRVL------TEASLLAAYKKPIIEVVV--------------------GTFKFT--------  128 (174)
T ss_dssp             ET-TEEESSHHHHHHHTTSSCS------SSCCCCEECCCCCSEEEE--------------------ESSCBC--------
T ss_pred             EC-CeecCcHHHHhhhhhcCcc------cccccccccccccccEEE--------------------EecCcc--------
Confidence            86 6899999999999998874      467788888764211111                    001110        


Q ss_pred             hcccchhhhhhhhchhccccc--c-ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552         355 YKHESLSQYNSTLDTRLLYPV--S-RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS  410 (523)
Q Consensus       355 ~~~~~l~~~~~e~~ar~m~~l--~-~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~  410 (523)
                                    |+.-..|  . .+++.+++..+.+||.++. ..+..|++|+++++
T Consensus       129 --------------~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~-~~g~~G~~P~nyv~  172 (174)
T 3qwx_X          129 --------------GERETDLPFEQGERLEILSKTNQDWWEARN-ALGTTGLVPANYVQ  172 (174)
T ss_dssp             --------------CSSTTBCCBCTTCEEEEEECCSSSEEEEEC-TTCCEEEEEGGGEE
T ss_pred             --------------cCCCCccccccCCEEEEEEccCCCeEEEEE-CCCCEEEEChHHEE
Confidence                          0111122  2 5777887777889999986 45688999999863

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}

Probab=99.88  E-value=1.5e-22  Score=172.14  Aligned_cols=102  Identities=26%  Similarity=0.462  Sum_probs=91.4

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHH
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELI  288 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV  288 (523)
                      ...+..++||||.|+|++||++|..  +|+||||+|++.+|.|+||++.+++++||+|...+|.|.+. +..|+||.+||
T Consensus        11 ~~~~~~~~WyhG~isR~eAe~lL~~--~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~g~y~~~-~~~F~sl~eLV   87 (116)
T 2kk6_A           11 MKPLAEQDWYHGAIPRIEAQELLKK--QGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRFE-GTGFSNIPQLI   87 (116)
T ss_dssp             CCCTTTCTTEEESCCHHHHHHTCCS--TTCEEEEECTTCTTCEEEEEEETTEEEEEEEEEETTEEESS-SCEESCHHHHH
T ss_pred             ccccccCCCccCCCCHHHHHHHhcc--CCcEEEEECCCCCCcEEEEEEECCeEEEEEEEecCCEEEEC-CCEeCCHHHHH
Confidence            3456788999999999999999985  99999999999899999999999999999999888888875 58999999999


Q ss_pred             HHHhhCCcccCCCCcceeeccccccC
Q psy8552         289 NYYKHESLSQYNSTLDTRLLYPVSRF  314 (523)
Q Consensus       289 ~~y~~~~~~~~~~~l~~~L~~p~~~~  314 (523)
                      +||+.+.++.. .++++.|+.||+++
T Consensus        88 ~~y~~~~~~i~-~~~~~~L~~Pv~r~  112 (116)
T 2kk6_A           88 DHHYTTKQVIT-KKSGVVLLNPIPKD  112 (116)
T ss_dssp             HHHHHTTCCSC-TTTTCCCCSCCCCC
T ss_pred             HHHhhCCCCcc-CCCCCeECcccCCC
Confidence            99999987653 46789999999975

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}

Probab=99.88  E-value=9.9e-23  Score=175.78  Aligned_cols=100  Identities=31%  Similarity=0.574  Sum_probs=90.0

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCC-CCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHH
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVEL  287 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~-~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~L  287 (523)
                      ...++.++||||.|+|++||++|.+. .+|+||||+|+ .+|.|+||++.+++++||+|..+++.|.+.+...|+||.+|
T Consensus        13 ~~~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~-~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~L   91 (124)
T 2eob_A           13 PNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKRE-GTDSYAITFRARGKVKHCRINRDGRHFVLGTSAYFESLVEL   91 (124)
T ss_dssp             SCSTTTSTTEESSCCHHHHHHHHHHCCSSSEEEEECCT-TSSCEEEEEEETTEEEEEEEEESSSCEESSSSCCBSSHHHH
T ss_pred             ccccCcCCCeecCCCHHHHHHHHhcCCCCCEEEEEecC-CCCCEEEEEEeCCeEEEEEEEECCCEEEECCCCcCCCHHHH
Confidence            45678899999999999999999876 58999999999 79999999999999999999987777888776679999999


Q ss_pred             HHHHhhCCcccCCCCcceeeccccccC
Q psy8552         288 INYYKHESLSQYNSTLDTRLLYPVSRF  314 (523)
Q Consensus       288 V~~y~~~~~~~~~~~l~~~L~~p~~~~  314 (523)
                      |+||+.+++     ++++.|+.||++.
T Consensus        92 V~~y~~~~~-----~~~~~L~~P~~~~  113 (124)
T 2eob_A           92 VSYYEKHAL-----YRKMRLRYPVTPE  113 (124)
T ss_dssp             HHHHTTSCS-----SSSCCSCEECCHH
T ss_pred             HHHHhhCCC-----CCCcCCCCcCCcH
Confidence            999999886     5789999999874

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=1.1e-22  Score=172.01  Aligned_cols=97  Identities=31%  Similarity=0.561  Sum_probs=87.8

Q ss_pred             CCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHHHH
Q psy8552         210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVELI  288 (523)
Q Consensus       210 ~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~LV  288 (523)
                      ..++.++||||.|+|++||++|.+.++|+||||+|++.+|.|+||++.+++++||+|.. .+|.|++. +..|+||.+||
T Consensus        14 v~~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~-~~~F~sl~~LV   92 (111)
T 2eo3_A           14 DSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIG-DQEFDHLPALL   92 (111)
T ss_dssp             CTTCHHHHEEESCCHHHHHHHHSSCCTTCEEEEECSSSSSCEEEEEEETTEEEEEEEEEETTTEEEET-TCCBSSHHHHH
T ss_pred             cccCCCCcccCCCCHHHHHHHhcCCCCceEEEEeecCCCCCEEEEEEeCCeEEEEEEEEcCCCCEEEC-CcccCCHHHHH
Confidence            34677899999999999999999889999999999988999999999999999999997 67889886 48999999999


Q ss_pred             HHHhhCCcccCCCCcceeecccccc
Q psy8552         289 NYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       289 ~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      +||+.+++.      ++.|+.||+|
T Consensus        93 ~~y~~~~l~------~~~L~~Pv~r  111 (111)
T 2eo3_A           93 EFYKIHYLD------TTTLIEPAPR  111 (111)
T ss_dssp             HHHTTSCSS------SSCCCCBCCC
T ss_pred             HHHhhCCCC------CccCCCcCcC
Confidence            999998862      5889999975

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens}

Probab=99.88  E-value=1.4e-22  Score=175.01  Aligned_cols=106  Identities=31%  Similarity=0.563  Sum_probs=92.5

Q ss_pred             CcCCCCCCCccccCCCHHHHHHHhcCC-CCceEEEEcCCCCCCcEEEEEEE------CCeeEEEEEEEe-CCeEEeCCCC
Q psy8552         208 ETNSLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRK------GGTNKLIKIFHR-NGRYGFSEPF  279 (523)
Q Consensus       208 ~~~~l~~~~wyhg~isr~~Ae~lL~~~-~~G~FLVR~s~~~~g~f~LSv~~------~~~v~h~~I~~~-~~~~~~~~~~  279 (523)
                      ...+++.++||||.|+|++||++|.+. ++|+||||+| ..+|.|+|||+.      ++.++||+|... +|.|++.+..
T Consensus         4 ~~~~l~~~~WyhG~isR~eAe~lL~~~g~~G~FLVR~S-s~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~   82 (125)
T 2ge9_A            4 AEDSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQGVIRHYVVCSTPQSQYYLAEKH   82 (125)
T ss_dssp             CCCSSCCSSSEETTCCHHHHHHHHHHHTCTTEEEEEEC-SSSCCEEEEEEESSSSSTTCEEEEEECEEETTTEEESSTTS
T ss_pred             cccccccCCccccCCCHHHHHHHHhhcCCCceEEEEec-CCCCCEEEEEEeccccCCCCeEEEEEEEEcCCCCEEECCCC
Confidence            346688999999999999999999865 7999999999 458999999997      479999999975 6789998778


Q ss_pred             ccCCHHHHHHHHhhCCcccCCCCcceeeccccccCCCCcc
Q psy8552         280 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVD  319 (523)
Q Consensus       280 ~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~  319 (523)
                      .|+||.+||+||+.++.     ++++.|+.||++.....+
T Consensus        83 ~F~sl~eLV~~y~~~~~-----~l~~~L~~P~~~~~~~~~  117 (125)
T 2ge9_A           83 LFSTIPELINYHQHNSA-----GLISRLKYPVSQQNKNAP  117 (125)
T ss_dssp             CBSSHHHHHHHHHCCCT-----TCSCCSSEECCSSCCCCC
T ss_pred             cCCCHHHHHHHhhhCCC-----CCceeCCCccCCCCCCCc
Confidence            99999999999999884     789999999998655443

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.88  E-value=9.3e-23  Score=172.47  Aligned_cols=98  Identities=35%  Similarity=0.596  Sum_probs=87.5

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCC-CCceEEEEcCCCCCCcEEEEEEE------CCeeEEEEEEEe-CCeEEeCCCCc
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRK------GGTNKLIKIFHR-NGRYGFSEPFK  280 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~-~~G~FLVR~s~~~~g~f~LSv~~------~~~v~h~~I~~~-~~~~~~~~~~~  280 (523)
                      ..+++.++||||.|+|++||++|... ++|+||||+|+ .+|.|+|||+.      ++.++||+|... +|.|++.+...
T Consensus         5 ~~~l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~-~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~   83 (110)
T 2ekx_A            5 SSGLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSS-QVGMYTVSLFSKAVNDKKGTVKHYHVHTNAENKLYLAENYC   83 (110)
T ss_dssp             SSCTTTSSSBCCSCCHHHHHHHHHHTCCTTEEEEEECS-STTCEEEEECCCCSSCSSCCCEEEECEECTTCCEESSTTCC
T ss_pred             cCcccCCCeecCCCCHHHHHHHHhccCCCceEEEEecC-CCCCEEEEEEeccccCCCCcEEEEEEEECCCCCEEECCCCc
Confidence            45688899999999999999999865 89999999994 58999999996      579999999984 67899987789


Q ss_pred             cCCHHHHHHHHhhCCcccCCCCcceeeccccc
Q psy8552         281 FTSVVELINYYKHESLSQYNSTLDTRLLYPVS  312 (523)
Q Consensus       281 F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~  312 (523)
                      |+||.+||+||+.++.     ++++.|+.||+
T Consensus        84 F~sl~~LV~~y~~~~~-----~l~~~L~~Pv~  110 (110)
T 2ekx_A           84 FDSIPKLIHYHQHNSA-----GMITRLRHPVS  110 (110)
T ss_dssp             CSCHHHHHHHHHHSCC-----SSSCCCCEECC
T ss_pred             cCCHHHHHHHHeeCCC-----CCceecCccCC
Confidence            9999999999999884     78999999985

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A

Probab=99.88  E-value=1.6e-22  Score=169.66  Aligned_cols=97  Identities=26%  Similarity=0.536  Sum_probs=83.3

Q ss_pred             CCCCCccccCCCHHHHHHHhcCC--CCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEe--CCe--EEeCC-CCccCCH
Q psy8552         212 LRDAEWYWGDISRDDVNDKLADT--ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR--NGR--YGFSE-PFKFTSV  284 (523)
Q Consensus       212 l~~~~wyhg~isr~~Ae~lL~~~--~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~--~~~--~~~~~-~~~F~sl  284 (523)
                      .+.++||||.|+|++||++|.+.  ++|+||||+|++.+|.|+||++.+++++||+|...  +|.  |.+.+ ...|+||
T Consensus         2 h~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~~F~sl   81 (105)
T 1nrv_A            2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDL   81 (105)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC-----CCEESSTTSSCBSSH
T ss_pred             CccCcccCCCCCHHHHHHHHHhcCCCCceEEEEeCCCCCCCEEEEEEeCCEEEEEEEEEEcCCCCEEEEEcCCCcccCCH
Confidence            35689999999999999999853  89999999999889999999999999999999873  453  54653 5789999


Q ss_pred             HHHHHHHhhCCcccCCCCcceeecccccc
Q psy8552         285 VELINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       285 ~~LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      .+||+||+.++.     ++++.|+.||++
T Consensus        82 ~~LV~~y~~~~~-----~l~~~L~~p~~r  105 (105)
T 1nrv_A           82 IQLVDFYQLNKG-----VLPCKLKHHCIR  105 (105)
T ss_dssp             HHHHHHHTTCCT-----TSSSCCCEECCC
T ss_pred             HHHHHHhhhCCC-----CCcEeCCCcCCC
Confidence            999999999875     789999999975

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A

Probab=99.88  E-value=1.5e-22  Score=170.03  Aligned_cols=99  Identities=28%  Similarity=0.399  Sum_probs=87.1

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  491 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~  491 (523)
                      .++.++||| .|+|++||++|.+.++|+||||.|+  +|.|+||++.+++++||+|...++ .++......|+||.+||+
T Consensus         4 ~L~~~~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~g-~~~l~~~~~F~sl~~Lv~   82 (106)
T 3eaz_A            4 KLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHAS-KLSIDEEVYFENLMQLVE   82 (106)
T ss_dssp             TGGGCTTBCCSCCHHHHHHHTCSCCTTEEEEEECTTSTTCEEEEEEETTEEEEEECEEETT-EEESSSSSCBSSHHHHHH
T ss_pred             ccccCCCcCCCCCHHHHHHHhCCCCCCEEEEEECCCCCCcEEEEEEeCCceEEEEEEecCC-EEEECCCCccCCHHHHHH
Confidence            578889999 9999999999998889999999997  899999999999999999997754 445554579999999999


Q ss_pred             HHhhCCccccCCccceeecccccCCCCC
Q psy8552         492 HYAANSLEEHNDDLKTTLAYPVFAPASG  519 (523)
Q Consensus       492 ~y~~~~l~~~~~~l~~~L~~pv~~~~~~  519 (523)
                      ||++++     +|++++|+.||++..+.
T Consensus        83 ~y~~~~-----~gl~~~L~~P~~~~~~~  105 (106)
T 3eaz_A           83 HYTSDA-----DGLCTRLIKPKVMEGTV  105 (106)
T ss_dssp             HHHHCC-----TTSSSCCCEECCCC---
T ss_pred             HHhhCC-----CCCCeecCCcCCCCCCC
Confidence            999996     89999999999887654

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A

Probab=99.88  E-value=1.1e-22  Score=176.64  Aligned_cols=101  Identities=25%  Similarity=0.392  Sum_probs=89.3

Q ss_pred             CCCCCccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCC-----CCccCCH
Q psy8552         212 LRDAEWYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSE-----PFKFTSV  284 (523)
Q Consensus       212 l~~~~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~-----~~~F~sl  284 (523)
                      ++.++||||.|+|++||++|.. .++|+||||+|++.+|.|+||++.+++++||+|.. .+|.|++.+     ...|+||
T Consensus         1 l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl   80 (128)
T 1ka6_A            1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKI   80 (128)
T ss_dssp             CCCCSSBCCSCCHHHHHHHHHHHCCTTCEEEEECSSSTTCEEEEEESSSCEEEEEEEECTTSCEEEECSTTSCCCEESSH
T ss_pred             CCCCcccCCCCCHHHHHHHHhcCCCCCEEEEeecCCCCCCEEEEEEeCCEEEEEEEEECCCCeEEEeecCCCCCCccCCH
Confidence            4678999999999999999974 47999999999988999999999999999999996 567888873     6889999


Q ss_pred             HHHHHHHhhCCcccCCCCcceeeccccccCCCC
Q psy8552         285 VELINYYKHESLSQYNSTLDTRLLYPVSRFSSD  317 (523)
Q Consensus       285 ~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~  317 (523)
                      .+||+||+.++.     ++++.|+.||++....
T Consensus        81 ~~LV~~y~~~~~-----gl~~~L~~P~~~~~~~  108 (128)
T 1ka6_A           81 KNLISAFQKPDQ-----GIVIPLQYPVEKKSSA  108 (128)
T ss_dssp             HHHHHHTTSSCS-----SSSSCCCSBCCSSCC-
T ss_pred             HHHHHHHhhCCC-----CCcEEcCCcCCCCCCC
Confidence            999999999874     7899999999986543

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B

Probab=99.88  E-value=1.1e-22  Score=174.45  Aligned_cols=102  Identities=36%  Similarity=0.519  Sum_probs=89.8

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCC-CCceEEEEcCCCCCCcEEEEEEEC------CeeEEEEEE---EeCCeEEeCCC
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKG------GTNKLIKIF---HRNGRYGFSEP  278 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~-~~G~FLVR~s~~~~g~f~LSv~~~------~~v~h~~I~---~~~~~~~~~~~  278 (523)
                      ..+++.++||||.|+|++||++|... ++|+||||+| +.+|.|+||++..      +.++||+|.   ..+|.|++.+.
T Consensus         3 ~~~l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~~~g~~~~~~~   81 (118)
T 3s9k_A            3 PNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDS-RTPGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYVAEK   81 (118)
T ss_dssp             --CGGGSTTBCTTCCHHHHHHHHHHHCCTTCEEEEEC-SSTTCEEEEEEECCSCSSSCEEEEEEEEECSCSSCCEEEECS
T ss_pred             ccccccCceecCCCCHHHHHHHHHhcCCCCeEEEEee-CCCCCEEEEEEecccccCCCceEEEEEeEEECCCCCEEECCC
Confidence            35678899999999999999999864 6999999999 6799999999986      899999994   35788999887


Q ss_pred             CccCCHHHHHHHHhhCCcccCCCCcceeeccccccCCC
Q psy8552         279 FKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSS  316 (523)
Q Consensus       279 ~~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~  316 (523)
                      ..|+||.+||+||+.++.     ++++.|+.||+++..
T Consensus        82 ~~F~sl~~LV~~y~~~~~-----~l~~~L~~Pv~~~~~  114 (118)
T 3s9k_A           82 YVFDSIPLLIQYHQYNGG-----GLVTRLRYPVCGSPG  114 (118)
T ss_dssp             CCCSCHHHHHHHHHHCCT-----TSSSCCCCCCCCSTT
T ss_pred             cccCCHHHHHHHheeCCC-----CCccCCCCcCCCCCC
Confidence            899999999999999884     789999999998654

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.88  E-value=2.8e-23  Score=190.59  Aligned_cols=136  Identities=19%  Similarity=0.390  Sum_probs=113.0

Q ss_pred             CCcCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCC----CccC
Q psy8552         207 PETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEP----FKFT  282 (523)
Q Consensus       207 ~~~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~----~~F~  282 (523)
                      ++...++.++||||.|+|++||++|.+.++|+||||+|++..+.|+||++.+++++||+|...+|+|++.+.    ..|+
T Consensus        26 ~~~~~l~~~~WYhG~isR~eAE~lL~~~~dGtFLVR~S~~~~~~lsLSvr~~~~v~H~rI~~~~g~f~l~~~~~~~~~F~  105 (187)
T 2izv_A           26 PDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDPCVFHSP  105 (187)
T ss_dssp             TTHHHHHHCTTEEEECCHHHHHHHHTTCCTTEEEEEECSSTTCSEEEEEEETTEEEEEECEEETTEEESCTTCTTSCCBS
T ss_pred             cchhhcccCCccccCCCHHHHHHHhcCCCCCcEEEEECCCCCceEEEEEeeCCeEEEEEEEECCCEEEEeccCCCccccC
Confidence            334567889999999999999999998899999999999877789999999999999999998999999753    3799


Q ss_pred             CHHHHHHHHhhCCcccCCCCcceeeccccccCCCCccc---------ccCCCCcCCCCCcccccccccCccc
Q psy8552         283 SVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDA---------DIHSNDVDKNPAPGVLRTFSEPFKF  345 (523)
Q Consensus       283 sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~  345 (523)
                      ||.+||+||+.++...   ...+.|+.||.+..+....         .+..+.++.+|+|..+++|+.+|..
T Consensus       106 SL~eLV~hY~~~~~~~---~~~~~L~~Pv~r~~p~sLqhLcR~~i~~~~~~~~i~~LPLP~~Lk~yl~~y~y  174 (187)
T 2izv_A          106 DITGLLEHYKDPSACM---FFEPLLSTPLIRTFPFSLQHICRTVICNCTTYDGIDALPIPSSMKLYLKEYHY  174 (187)
T ss_dssp             SHHHHHHHTCCGGGCC---TTSCCCCEECCCCSCCCHHHHHHHHHHHHSCHHHHHTSSSCHHHHHHHTSSEE
T ss_pred             CHHHHHHHHHhccccc---cccccccccccccccccHHHHHHHHHHhhcCcCcccccCCCHHHHHHHHhCCC
Confidence            9999999999988643   2357899999986542111         1234667889999999999888765

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens}

Probab=99.88  E-value=2.6e-22  Score=173.39  Aligned_cols=100  Identities=25%  Similarity=0.471  Sum_probs=87.5

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCC--CCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE--eCCeEEe--C-CCCcc
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADT--ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH--RNGRYGF--S-EPFKF  281 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~--~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~--~~~~~~~--~-~~~~F  281 (523)
                      ...++.++||||.|+|++||++|.+.  ++|+||||+|++.+|.|+||++.+++++||+|..  .+|.|++  . +...|
T Consensus        20 ~~~l~~~~WyhG~isR~eAe~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~G~~~~~l~~~~~~F   99 (126)
T 2aug_A           20 HMIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEMFHTLDDGHTRF   99 (126)
T ss_dssp             --CGGGSTTEETTCCHHHHHHHHHTTTCCTTEEEEEECSSSSCCEEEEEEETTEEEEEEEEEEEETTEEEEESSTTSSCB
T ss_pred             ccccccCCcccCCCCHHHHHHHHhccCCCCCEEEEeecCCCCCCEEEEEEcCCeEEEEEEEEECCCCeEEEEeCCCCCcc
Confidence            35578889999999999999999874  7999999999988999999999999999999987  3677765  3 35789


Q ss_pred             CCHHHHHHHHhhCCcccCCCCcceeecccccc
Q psy8552         282 TSVVELINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       282 ~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      +||.+||+||+.++.     ++++.|+.||++
T Consensus       100 ~SL~eLV~~y~~~~~-----~l~~~L~~P~~r  126 (126)
T 2aug_A          100 TDLIQLVEFYQLNKG-----VLPCKLKHYCAR  126 (126)
T ss_dssp             SSHHHHHHHHTTCCT-----TSSSCCCEECCC
T ss_pred             CCHHHHHHHHhhCCC-----CCceecCCCcCC
Confidence            999999999999875     789999999975

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus}

Probab=99.87  E-value=3.2e-22  Score=175.94  Aligned_cols=105  Identities=29%  Similarity=0.526  Sum_probs=91.1

Q ss_pred             cCCCCCCCccccCC-CHHHHHHHhcC------CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEe-C-C--eEEeCC
Q psy8552         209 TNSLRDAEWYWGDI-SRDDVNDKLAD------TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-N-G--RYGFSE  277 (523)
Q Consensus       209 ~~~l~~~~wyhg~i-sr~~Ae~lL~~------~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~-~-~--~~~~~~  277 (523)
                      ...+..++||||.| +|++||++|+.      .++|+||||+|++.+|.|+|||+.+++++||+|... + |  .|++.+
T Consensus        16 ~~~~~~~~WyhG~i~sR~eAe~lL~~~c~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~gg~~~~~l~~   95 (138)
T 2dx0_A           16 TELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTD   95 (138)
T ss_dssp             GGTTSCCTTBCTTCCCHHHHHHHHHHHHTTTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEEEETTEEEEESST
T ss_pred             cccccCCCcccCCCCCHHHHHHHHHhhccccCCCCCEEEEEeCCCCCCCeEEEEEECCeEEEEEEEEecCCCceEEEeCC
Confidence            45578899999999 89999999984      589999999999889999999999999999999963 3 4  688888


Q ss_pred             CCccCCHHHHHHHHhhCCcccCCCCcceeeccccccCC
Q psy8552         278 PFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFS  315 (523)
Q Consensus       278 ~~~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~  315 (523)
                      ...|+||.+||+||+.+++..  .++.+.|+.||++..
T Consensus        96 ~~~F~sl~eLI~~y~~~~l~~--~gl~~~L~~Pv~~~~  131 (138)
T 2dx0_A           96 NLTFNSIYALIQHYREAHLRC--AEFELRLTDPVPNPN  131 (138)
T ss_dssp             TSCBSSHHHHHHHTTTSCCCC--GGGSSCCCCBCC---
T ss_pred             CCcCCCHHHHHHHHhhCCCCC--CCcccccCccCCCCC
Confidence            899999999999999998753  478999999999854

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A

Probab=99.87  E-value=2e-22  Score=171.63  Aligned_cols=97  Identities=31%  Similarity=0.489  Sum_probs=86.0

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcC--CCCCeEEeecCC--CCceEEEEEE----CCeeEEEEEEEeCCcEEEecCCCCCCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPST--TGQYALSIVC----SGAPKHCLVYETERGFGFAEPFNIYPS  485 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~--~~~G~FLvR~s~--~~~~~Ls~~~----~~~v~h~~I~~~~~~~~~~~~~~~F~s  485 (523)
                      .++.++||| .|+|++||++|..  ..+|+||||.|+  +|.|+||++.    ++.|+||+|...++|.++......|+|
T Consensus         8 ~l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   87 (114)
T 1blj_A            8 TLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITFPT   87 (114)
T ss_dssp             CSCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETTTEEEEETTEEESS
T ss_pred             ccccCCccCCCCCHHHHHHHHhhCCCCCceEEEEeCCCCCCCEEEEEEEecCCCCcEEEEEEEEcCCCCEEECCCcccCC
Confidence            588899999 9999999999974  579999999998  8999999998    689999999997655444444579999


Q ss_pred             HHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552         486 LGALVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       486 l~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      |.+||+||++++     +|++++|+.||+++
T Consensus        88 l~~LV~~y~~~~-----~~l~~~L~~p~~~~  113 (114)
T 1blj_A           88 LQALVQHYSKKG-----DGLCQKLTLPCVNL  113 (114)
T ss_dssp             HHHHHHHHHHCC-----SSSSSCCCCCSCCC
T ss_pred             HHHHHHHhhhCC-----CCCceecCccCCCC
Confidence            999999999996     89999999999876

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=1.3e-22  Score=175.48  Aligned_cols=106  Identities=32%  Similarity=0.521  Sum_probs=91.9

Q ss_pred             CCcCCCCCCCccccCCCHHHHHHHhcCC-CCceEEEEcCCCCCCcEEEEEEE------CCeeEEEEEEEe-CCeEEeCCC
Q psy8552         207 PETNSLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRK------GGTNKLIKIFHR-NGRYGFSEP  278 (523)
Q Consensus       207 ~~~~~l~~~~wyhg~isr~~Ae~lL~~~-~~G~FLVR~s~~~~g~f~LSv~~------~~~v~h~~I~~~-~~~~~~~~~  278 (523)
                      +....++.++||||.|+|++||++|... ++|+||||+|+ .+|.|+|||+.      ++.++||+|... +|.|++.+.
T Consensus         8 ~~~~~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~-~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~   86 (125)
T 2dm0_A            8 NKITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSR-HLGSYTISVFMGARRSTEAAIKHYQIKKNDSGQWYVAER   86 (125)
T ss_dssp             CCSCCCTTSSSBCCSCCHHHHHHHHHHHCSTTCBCEEEET-TEEEEEEEEECCCSSSSSCCEEEEEEEECTTCCEESSSS
T ss_pred             CCccccccCCcccCCCCHHHHHHHHhhcCCCCEEEEEecC-CCCCEEEEEEeccccCCCCcEEEEEEEEcCCCCEEECCC
Confidence            3456788999999999999999999854 79999999994 58999999997      469999999974 677999877


Q ss_pred             CccCCHHHHHHHHhhCCcccCCCCcceeeccccccCCCCc
Q psy8552         279 FKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDV  318 (523)
Q Consensus       279 ~~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~  318 (523)
                      ..|.||.+||+||+.++.     ++++.|+.||++.....
T Consensus        87 ~~F~sl~eLV~~y~~~~~-----~l~~~L~~P~~~~~~~~  121 (125)
T 2dm0_A           87 HAFQSIPELIWYHQHNAA-----GLMTRLRYPVGLMGSSG  121 (125)
T ss_dssp             CCCSSHHHHHHHHTTCCC-----SSSCCCCSBCCSSCSCC
T ss_pred             CccCCHHHHHHHhhhCCC-----CCccCCCCccCCCCCCC
Confidence            899999999999999875     78999999999864443

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*

Probab=99.87  E-value=3.3e-22  Score=167.77  Aligned_cols=95  Identities=33%  Similarity=0.503  Sum_probs=83.8

Q ss_pred             CCCCcccc-cCCHHHHHHHhcC--CCCCeEEeecCC--CCceEEEEEE-----CCeeEEEEEEEeCCcEEEecCCCCCCC
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPST--TGQYALSIVC-----SGAPKHCLVYETERGFGFAEPFNIYPS  485 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~--~~~G~FLvR~s~--~~~~~Ls~~~-----~~~v~h~~I~~~~~~~~~~~~~~~F~s  485 (523)
                      ++.++||| .|+|++||++|..  .++|+||||.|+  +|.|+||++.     ++.|+||+|...++|.++......|+|
T Consensus         1 l~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   80 (105)
T 1lkk_A            1 LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPG   80 (105)
T ss_dssp             CCCCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSCBSS
T ss_pred             CCcCceecCCCCHHHHHHHHHhcCCCCceEEEEECCCCCCcEEEEEEEcccCCCCcEEEEEEEECCCCCEEECCCceeCC
Confidence            35679999 9999999999974  579999999998  8999999998     689999999997666555555589999


Q ss_pred             HHHHHHHHhhCCccccCCccceeecccccC
Q psy8552         486 LGALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       486 l~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      |.+||+||++++     +|++++|+.||++
T Consensus        81 l~~LI~~y~~~~-----~~l~~~L~~P~~~  105 (105)
T 1lkk_A           81 LHELVRHYTNAS-----DGLCTRLSRPCQT  105 (105)
T ss_dssp             HHHHHHHHHHCC-----TTSSSCCCSBCCC
T ss_pred             HHHHHHHHhhCC-----CCCccCCcCcCCC
Confidence            999999999996     8999999999975

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.87  E-value=1.9e-22  Score=167.58  Aligned_cols=94  Identities=28%  Similarity=0.319  Sum_probs=84.0

Q ss_pred             CCcccc-cCCHHHHHHHhcC--CCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHH
Q psy8552         418 EKTWLV-RMSRAQAEALLSG--RPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  492 (523)
Q Consensus       418 ~~~W~~-~isr~~Ae~~L~~--~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~  492 (523)
                      +++||| .|+|++||++|..  +++|+||||.|+  +|.|+||++.+++++||+|..+++|.++......|+||.+||+|
T Consensus         1 ~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~   80 (100)
T 1rja_A            1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNY   80 (100)
T ss_dssp             CCCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECSSSCEEEETTEEESSHHHHHHH
T ss_pred             CCCcccCCCCHHHHHHHHhccCCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCCcEEECCCCccCCHHHHHHH
Confidence            368999 9999999999987  679999999998  79999999999999999999976665554555799999999999


Q ss_pred             HhhCCccccCCccceeecccccCC
Q psy8552         493 YAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       493 y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      |+.++     .++++.|+.||+++
T Consensus        81 y~~~~-----~~l~~~L~~p~~~~   99 (100)
T 1rja_A           81 HRAQS-----LSHGLRLAAPCRKH   99 (100)
T ss_dssp             HHHCC-----TTSSSCCCSBCCCC
T ss_pred             HhhCC-----CCCCCCCCccCCCC
Confidence            99997     68899999999886

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C*

Probab=99.87  E-value=2.1e-22  Score=170.42  Aligned_cols=103  Identities=22%  Similarity=0.422  Sum_probs=87.0

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCC---CCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCH
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADT---ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSV  284 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~---~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl  284 (523)
                      ..+++.++||||.|+|++||++|...   ++|+||||+|++.+|.|+||++.+++++||+|.. .+|.|++. ...|+||
T Consensus         3 ~~~l~~~~WyhG~isR~~Ae~lL~~~g~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~-~~~F~sl   81 (111)
T 2hdv_A            3 DQPLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQCRVQ-HLHFQSI   81 (111)
T ss_dssp             CCCGGGSTTEEEECCHHHHHHHHHTTGGGGTTEEEEEECSSCTTEEEEEEEETTEEEEEEEEECTTCCEEET-TEEESSH
T ss_pred             CcccccCCCcCCCCCHHHHHHHHHHcCCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCCCEEeC-CceeCCH
Confidence            35678899999999999999999864   8999999999988999999999999999999997 57778886 5899999


Q ss_pred             HHHHHHHhhCCcccCCCC-cceeeccccc
Q psy8552         285 VELINYYKHESLSQYNST-LDTRLLYPVS  312 (523)
Q Consensus       285 ~~LV~~y~~~~~~~~~~~-l~~~L~~p~~  312 (523)
                      .+||+||+.++++....+ ..+.|+.|++
T Consensus        82 ~~LV~~y~~~~l~~~~~~~~~v~L~~~v~  110 (111)
T 2hdv_A           82 FDMLEHFRVHPIPLESGGSSDVVLVSYVP  110 (111)
T ss_dssp             HHHHHHHTTSCCC-------CCCCCEECC
T ss_pred             HHHHHHHhhCCcccccCCccceEcccccc
Confidence            999999999998775444 5777777765

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens}

Probab=99.87  E-value=3.5e-22  Score=168.53  Aligned_cols=99  Identities=17%  Similarity=0.322  Sum_probs=83.4

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEE---CCeeEEEEEEEeCCeEEeC--CCCccC
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRK---GGTNKLIKIFHRNGRYGFS--EPFKFT  282 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~---~~~v~h~~I~~~~~~~~~~--~~~~F~  282 (523)
                      ...+..+|||||.|+|.+||.+|.. ..+|+||||+|++.+ .|+|||+.   ++.|+||+|.+.+|+|+|.  ....|+
T Consensus         9 ~~~l~~epWff~~isR~eAE~lL~~~~~~GaFLVR~Se~~~-~ySLSVR~~~~~~~VKHYkI~~~~G~y~I~~~~~~~F~   87 (125)
T 3maz_A            9 VDVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSDSR-NYSITIRQEIDIPRIKHYKVMSVGQNYTIELEKPVTLP   87 (125)
T ss_dssp             --CCCCCCTTBCCCCHHHHHHHHHHCGGGCSEEEEECTTSS-SEEEEEEECSSSCEEEEEEEEEETTEEEECSSSCEEES
T ss_pred             cccccCCCCCcCCCCHHHHHHHHhccCCCCcEEEEeCCCCC-CEEEEEEecCCCCCEeeeEEEEeCCEEEEecCCCcCcC
Confidence            4567789999999999999998865 358999999998855 89999998   6899999999888999997  345799


Q ss_pred             CHHHHHHHHhhCCcccCCCCcceeecccccc
Q psy8552         283 SVVELINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       283 sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      ||.+||+||+++++     |+++.|..||..
T Consensus        88 SL~eLV~yY~~~ad-----Gl~~~L~~~c~~  113 (125)
T 3maz_A           88 NLFSVIDYFVKETR-----GNLRPFIASTDE  113 (125)
T ss_dssp             SHHHHHHHHHHHTT-----TCCCBCCC----
T ss_pred             CHHHHHHHHHhCCC-----cCcccccccccc
Confidence            99999999999986     899999999853

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*

Probab=99.87  E-value=3.1e-22  Score=167.52  Aligned_cols=95  Identities=26%  Similarity=0.363  Sum_probs=83.9

Q ss_pred             CCCCcccc-cCCHHHHHHHhcCC-CCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEec-----CCCCCCCH
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAE-----PFNIYPSL  486 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~~-~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~-----~~~~F~sl  486 (523)
                      ++.++||| .|+|++||++|... ++|+||||.|+  +|.|+||++.+++|+||+|.+.++|.++..     ....|+||
T Consensus         1 l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl   80 (104)
T 1d4t_A            1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKI   80 (104)
T ss_dssp             CTTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEECBCTTSCCCCBSSH
T ss_pred             CCCCceEccCCCHHHHHHHHHhcCCCCEEEEeeCCCCCCCEEEEEEECCeEEEEEEEECCCCeEEEeccCCCCCcccCCH
Confidence            35679999 99999999999643 79999999997  899999999999999999998777755554     25799999


Q ss_pred             HHHHHHHhhCCccccCCccceeecccccC
Q psy8552         487 GALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       487 ~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      .+||+||+.++     +|++++|++||++
T Consensus        81 ~~LV~~y~~~~-----~~l~~~L~~P~~r  104 (104)
T 1d4t_A           81 KNLISAFQKPD-----QGIVIPLQYPVEK  104 (104)
T ss_dssp             HHHHHHHTSSS-----SSSSSCCCEECCC
T ss_pred             HHHHHHHhhCC-----CCCeEECCCcCCC
Confidence            99999999996     8999999999975

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...

Probab=99.87  E-value=5e-22  Score=169.46  Aligned_cols=103  Identities=24%  Similarity=0.504  Sum_probs=87.8

Q ss_pred             CCCCCCccccCCCHHHHHHHhcCC-CCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHHHH
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVELI  288 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~~~-~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~LV  288 (523)
                      .++.++||||.|+|++||++|.+. ++|+||||+|++.+|.|+||++.+++++||+|.+ .+|.|++.+ ..|+||.+||
T Consensus         2 ~L~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~-~~F~sl~eLV   80 (117)
T 3ov1_A            2 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV-VKFNSLNELV   80 (117)
T ss_dssp             -CCCCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSS-CEESSHHHHH
T ss_pred             CcccCCcccCCCCHHHHHHHHhCCCCCCcEEEEeCCCCCCCEEEEEecCCceEEEEEEECCCCeEEECC-CCcCCHHHHH
Confidence            467899999999999999999985 7899999999988999999999999999999987 577888876 7999999999


Q ss_pred             HHHhhCCcccCCCCcceeeccccccCCCC
Q psy8552         289 NYYKHESLSQYNSTLDTRLLYPVSRFSSD  317 (523)
Q Consensus       289 ~~y~~~~~~~~~~~l~~~L~~p~~~~~~~  317 (523)
                      +||+.+++..   .....|..|++.++..
T Consensus        81 ~~y~~~~l~~---~~~~~L~~~~~~P~~~  106 (117)
T 3ov1_A           81 DYHRSTSVSR---NQQIFLRDIEQVPQQP  106 (117)
T ss_dssp             HHTTTSCSCS---SSCCCCBCCCCCC---
T ss_pred             HHHhhCCCCC---CCceEecCCCcCCCCC
Confidence            9999998753   4566777777765443

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus}

Probab=99.87  E-value=4.6e-22  Score=174.93  Aligned_cols=105  Identities=32%  Similarity=0.477  Sum_probs=86.9

Q ss_pred             CCCCCcccc-cC-CHHHHHHHhc------CCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCC-c--EEEecCCC
Q psy8552         415 ESGEKTWLV-RM-SRAQAEALLS------GRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETER-G--FGFAEPFN  481 (523)
Q Consensus       415 ~~~~~~W~~-~i-sr~~Ae~~L~------~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~-~--~~~~~~~~  481 (523)
                      .+..++||| .| +|++||++|+      +..+|+||||.|+  +|.|+||++.+++|+||+|....+ |  .++.....
T Consensus        18 ~~~~~~WyhG~i~sR~eAe~lL~~~c~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~gg~~~~~l~~~~   97 (138)
T 2dx0_A           18 LHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNL   97 (138)
T ss_dssp             TTSCCTTBCTTCCCHHHHHHHHHHHHTTTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEEEETTEEEEESSTTS
T ss_pred             cccCCCcccCCCCCHHHHHHHHHhhccccCCCCCEEEEEeCCCCCCCeEEEEEECCeEEEEEEEEecCCCceEEEeCCCC
Confidence            378899999 99 8999999997      3689999999998  899999999999999999998754 3  45555568


Q ss_pred             CCCCHHHHHHHHhhCCccccCCccceeecccccCCCCCCc
Q psy8552         482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMT  521 (523)
Q Consensus       482 ~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~~~~~  521 (523)
                      .|+||.+||+||+++++..  +|+.++|++||+++.|..+
T Consensus        98 ~F~sl~eLI~~y~~~~l~~--~gl~~~L~~Pv~~~~p~~~  135 (138)
T 2dx0_A           98 TFNSIYALIQHYREAHLRC--AEFELRLTDPVPNPNPSGP  135 (138)
T ss_dssp             CBSSHHHHHHHTTTSCCCC--GGGSSCCCCBCC-------
T ss_pred             cCCCHHHHHHHHhhCCCCC--CCcccccCccCCCCCCCCC
Confidence            9999999999999998764  6899999999999877543

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens}

Probab=99.87  E-value=2.8e-22  Score=177.02  Aligned_cols=88  Identities=38%  Similarity=0.615  Sum_probs=81.8

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeC---CCCccCCHH
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS---EPFKFTSVV  285 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~---~~~~F~sl~  285 (523)
                      ...++.++||||.|+|++||++|.+.++|+||||+|++.+|.|+||++.+++++||+|...+|.|++.   ....|+||.
T Consensus        18 ~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~g~~~l~~~~~~~~F~sl~   97 (141)
T 2vif_A           18 LKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNGRFSFYEQPDVEGHTSIV   97 (141)
T ss_dssp             HHHHHHHTCBCCSCCHHHHHHHTTTSCTTCEEEEECSSTTCSEEEEEEETTEEEEEEEEEETTEEEETTCCSCCCBSSHH
T ss_pred             hhhhccCCCcccCCCHHHHHHHhcCCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEEECCEEEEeecCCCCccCCHH
Confidence            45577789999999999999999988999999999999889999999999999999999889999998   578999999


Q ss_pred             HHHHHHhhCCc
Q psy8552         286 ELINYYKHESL  296 (523)
Q Consensus       286 ~LV~~y~~~~~  296 (523)
                      +||+||+.+++
T Consensus        98 eLI~~y~~~~~  108 (141)
T 2vif_A           98 DLIEHSIGDSE  108 (141)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhhCCC
Confidence            99999998874

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A

Probab=99.86  E-value=5.2e-22  Score=168.64  Aligned_cols=102  Identities=25%  Similarity=0.367  Sum_probs=90.3

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHH
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELI  288 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV  288 (523)
                      ...++.++||||.|+|++||++|..  +|+||||+|++.+ .|+||++.+++++||+|...+|.|.+. ...|+||.+||
T Consensus        10 ~~~l~~~~WyhG~isR~eAe~lL~~--~G~FLVR~S~~~~-~y~LSv~~~~~v~H~~I~~~~g~~~~~-~~~F~sl~~LV   85 (114)
T 1wqu_A           10 QKPLHEQLWYHGAIPRAEVAELLVH--SGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSLDNLYRLE-GEGFPSIPLLI   85 (114)
T ss_dssp             GSCGGGCTTEEESCCHHHHHTTCCS--TTEEEEEECSSSC-CEEEEEEETTEEEEEECEECSSSEESS-SCCBSSHHHHH
T ss_pred             ccccccCCcEeeCCCHHHHHHHhcc--CCeEEEEEcCCCC-CEEEEEEECCEEEEEEEEecCCEEEEC-CCCCCCHHHHH
Confidence            5567889999999999999999985  9999999999877 999999999999999999877878775 58999999999


Q ss_pred             HHHhhCCcccCCCCcceeeccccccCC
Q psy8552         289 NYYKHESLSQYNSTLDTRLLYPVSRFS  315 (523)
Q Consensus       289 ~~y~~~~~~~~~~~l~~~L~~p~~~~~  315 (523)
                      +||+.+.++. +.++++.|+.||++..
T Consensus        86 ~~y~~~~~~~-~~~~~~~L~~Pv~r~~  111 (114)
T 1wqu_A           86 DHLLSTQQPL-TKKSGVVLHRAVPSGP  111 (114)
T ss_dssp             HHHHHHCCCS-CTTTCCCCCEECCSCT
T ss_pred             HHHHHCCCCc-CCCCCcEECcccCCCC
Confidence            9999987654 3467899999999853

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*

Probab=99.86  E-value=7.4e-22  Score=162.50  Aligned_cols=83  Identities=29%  Similarity=0.666  Sum_probs=76.5

Q ss_pred             CCCccccCCCHHHHHHHhcCCC-CceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHHHHHHH
Q psy8552         214 DAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVELINYY  291 (523)
Q Consensus       214 ~~~wyhg~isr~~Ae~lL~~~~-~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~LV~~y  291 (523)
                      .++||||.|+|++||++|.+.+ +|+||||+|++.+|.|+||++.++.++||+|.. .+|.|++.+ ..|+||.+||+||
T Consensus         2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~-~~F~sl~~LV~~y   80 (96)
T 1jyr_A            2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV-VKFNSLNELVDYH   80 (96)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSS-CEESSHHHHHHHT
T ss_pred             CcceeccCCCHHHHHHHHhcCCCCcEEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCCCEEECC-cccCCHHHHHHHH
Confidence            4799999999999999999876 999999999988999999999999999999997 477888875 8999999999999


Q ss_pred             hhCCcc
Q psy8552         292 KHESLS  297 (523)
Q Consensus       292 ~~~~~~  297 (523)
                      +.+++.
T Consensus        81 ~~~~l~   86 (96)
T 1jyr_A           81 RSTSVS   86 (96)
T ss_dssp             TSSCSC
T ss_pred             hhCCCC
Confidence            998874

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.86  E-value=6.5e-22  Score=166.86  Aligned_cols=91  Identities=35%  Similarity=0.633  Sum_probs=81.4

Q ss_pred             CccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeC------------------CeEEeCC
Q psy8552         216 EWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRN------------------GRYGFSE  277 (523)
Q Consensus       216 ~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~------------------~~~~~~~  277 (523)
                      +||||.|+|++||++|.+.++|+||||+|++.+|.|+||++.+++++||+|...+                  +.|.++ 
T Consensus         1 ~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~g~~~~~~~l~-   79 (109)
T 1ju5_A            1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIG-   79 (109)
T ss_dssp             CCEETTCCHHHHHHHHTTCCTTEEEEEECSSSTTEEEEEEECSSCEEEEEEECCSSSSCCCCCCSSCCTTCCCCCEEET-
T ss_pred             CccccCCCHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCeEEEEEEEECCCCcccccccccccccccccEEEeC-
Confidence            6999999999999999988999999999998899999999999999999998743                  357775 


Q ss_pred             CCccCCHHHHHHHHhhCCcccCCCCcceeecccccc
Q psy8552         278 PFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       278 ~~~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      ...|+||.+||+||+.+++.      ++.|+.||+|
T Consensus        80 ~~~F~sl~~LV~~y~~~~l~------~~~L~~Pv~r  109 (109)
T 1ju5_A           80 DQEFDSLPALLEFYKIHYLD------TTTLIEPVSR  109 (109)
T ss_dssp             TEEESSHHHHHHHHHHSCSS------SSCCCEESCC
T ss_pred             CcccCCHHHHHHHHhhCCCC------CeecCccCCC
Confidence            68999999999999998863      3689999875

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A

Probab=99.86  E-value=7.6e-22  Score=169.36  Aligned_cols=103  Identities=28%  Similarity=0.500  Sum_probs=91.0

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC---CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST---TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  490 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~---~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV  490 (523)
                      .+..++||| .|+|++||++|.+.++|+||||.|+   +|.|+||++.++.++||+|...+++|++. ....|+||.+||
T Consensus         7 ~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~g~y~LSv~~~~~v~H~~I~~~~g~~~l~-~~~~F~sl~~LI   85 (120)
T 2iug_A            7 SLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFS-DPLTFSSVVELI   85 (120)
T ss_dssp             HHHTCTTBCCSCCHHHHHHHHTTCCTTEEEEEECSSGGGCSEEEEEEETTEEEEEEEEEETTEEESS-SSCCBSSHHHHH
T ss_pred             ccccCCccccCCCHHHHHHHhcCCCCcEEEEECCCCCCCCcEEEEEEECCEEEEEEEEEcCCEEEEC-CCCccCCHHHHH
Confidence            367789999 9999999999998889999999998   48999999999999999999986555554 457999999999


Q ss_pred             HHHhhCCccccCCccceeecccccCCCC
Q psy8552         491 LHYAANSLEEHNDDLKTTLAYPVFAPAS  518 (523)
Q Consensus       491 ~~y~~~~l~~~~~~l~~~L~~pv~~~~~  518 (523)
                      +||+.+++....+|++++|++||+++..
T Consensus        86 ~~y~~~~~~~~~~~l~~~L~~Pv~r~~~  113 (120)
T 2iug_A           86 NHYRNESLAQYNPKLDVKLLYPVSKYQQ  113 (120)
T ss_dssp             HHHHHSCGGGTCGGGCCCCCEECCTTTC
T ss_pred             HHHHhCccccccCCcceeeCCcCCcCcc
Confidence            9999999887667899999999998654

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A

Probab=99.86  E-value=5.9e-22  Score=172.40  Aligned_cols=99  Identities=24%  Similarity=0.311  Sum_probs=87.7

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEEC---------------CeeEEEEEEEeCCeE
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKG---------------GTNKLIKIFHRNGRY  273 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~---------------~~v~h~~I~~~~~~~  273 (523)
                      ...+..++||||.|+|++||++|++.++|+||||+|++.+|.|+|||+..               +.|+||+|...+++|
T Consensus        14 ~~~~~~~~Wyhg~isR~eAe~lL~~~~~G~FLVR~S~s~~g~y~LSv~~~~~~~~~~~~~g~~~~~~v~H~~I~~~~~g~   93 (131)
T 2kno_A           14 RGSDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKGV   93 (131)
T ss_dssp             CCCCCHHHHBCTTCCHHHHHHHHTTSCTTBEEEEECSSSTTEEEEEEECSCCSSSSSSCCSCHHHHHEEEEEEECCSSCC
T ss_pred             ccccccCCceecCCCHHHHHHHhcCCCCCeEEEecCCCCCCCEEEEEEeCCCCcccccccccccCCceEEEEEEECCCCC
Confidence            34566789999999999999999988999999999998899999999986               389999999765568


Q ss_pred             Ee---CCCCccCCHHHHHHHHhhCCcccCCCCcceeeccccc
Q psy8552         274 GF---SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS  312 (523)
Q Consensus       274 ~~---~~~~~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~  312 (523)
                      ++   .....|+||.+||+||+.+++     ++++.|+.|+.
T Consensus        94 ~l~g~~~~~~F~SL~eLV~~y~~~~~-----~L~~~L~~P~~  130 (131)
T 2kno_A           94 KIKGCPSEPYFGSLSALVSQHSISPI-----SLPCCLRIPSK  130 (131)
T ss_dssp             CEETCSSCCCCCSHHHHHHTTTTCCS-----SCSSCCBCSSC
T ss_pred             EEecCCCCCccCCHHHHHHHHhhCCC-----CCCeECCCcCC
Confidence            88   466889999999999999986     78999999974

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.86  E-value=1.3e-21  Score=167.83  Aligned_cols=99  Identities=26%  Similarity=0.396  Sum_probs=86.9

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcC-CCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecC-----CCCCCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEP-----FNIYPS  485 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~-~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-----~~~F~s  485 (523)
                      .++.++||| .|+|++||++|+. .++|+||||.|+  +|.|+||++.++.|+||+|....+|.++...     ...|+|
T Consensus         6 ~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~s   85 (119)
T 2ysx_A            6 SGMVPCWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQASEGVSMRFFTK   85 (119)
T ss_dssp             SSCCCSSEEESCCHHHHHHHHHHHCCTTEEEEEECSSCTTSEEEEEECSSCEEEEEEEECTTSCEEECCSCSSSCCCBSS
T ss_pred             CCCCCccccCCCCHHHHHHHHhhcCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeccCCcCCcccCC
Confidence            578889999 9999999999975 579999999998  8999999999999999999987666444442     368999


Q ss_pred             HHHHHHHHhhCCccccCCccceeecccccCCCC
Q psy8552         486 LGALVLHYAANSLEEHNDDLKTTLAYPVFAPAS  518 (523)
Q Consensus       486 l~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~~  518 (523)
                      |.+||+||+.++     .|++++|++||+++..
T Consensus        86 l~eLV~~y~~~~-----~~l~~~L~~P~~~~~~  113 (119)
T 2ysx_A           86 LDQLIEFYKKEN-----MGLVTHLQYPVPLEEE  113 (119)
T ss_dssp             HHHHHHHTTSSS-----SSSSSCCCEECCCCCC
T ss_pred             HHHHHHHHhhCC-----CCCCeECCCcCCCCCC
Confidence            999999999986     7899999999998644

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}

Probab=99.86  E-value=3.6e-22  Score=170.60  Aligned_cols=96  Identities=17%  Similarity=0.209  Sum_probs=86.0

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEE----CCeeEEEEEEEeCCeEEeCCCCcc--
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRK----GGTNKLIKIFHRNGRYGFSEPFKF--  281 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~----~~~v~h~~I~~~~~~~~~~~~~~F--  281 (523)
                      ...++.++||||.|+|++||++|.. .++|+||||+|++.+|.|+|||+.    ++.|+||+|...+|+|++.+...|  
T Consensus        15 ~r~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~~~g~~~i~~~~~F~~   94 (118)
T 2el8_A           15 ARRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGPKYVIDVEQPFSC   94 (118)
T ss_dssp             CCCCSSSCTTCCCCCHHHHHHHHHHSSTTCSBEEEECCSSSSSEEEEECCCBTTBCCCEEECBCCBTTBCCBSSSSCCCC
T ss_pred             hccccCCCceecCCCHHHHHHHHhhCCCCcEEEEeeCCCCCCceEEEEEEecCCCCcEEEEEEEEcCCEEEEeCCCeECC
Confidence            4456789999999999999999964 589999999999989999999999    899999999988889999887899  


Q ss_pred             CCHHHHHHHHhhCCcccCCCCcceeecc
Q psy8552         282 TSVVELINYYKHESLSQYNSTLDTRLLY  309 (523)
Q Consensus       282 ~sl~~LV~~y~~~~~~~~~~~l~~~L~~  309 (523)
                      +||.+||+||+.+++     ++++.|..
T Consensus        95 ~sL~eLV~~y~~~~~-----gl~~~L~~  117 (118)
T 2el8_A           95 TSLDAVVNYFVSHTK-----KALVPFLL  117 (118)
T ss_dssp             SSHHHHHHHHHHHSS-----SCCCBCCC
T ss_pred             CCHHHHHHHHhhCCC-----CCeEeeec
Confidence            999999999999986     67777653

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*

Probab=99.86  E-value=1.5e-21  Score=161.96  Aligned_cols=87  Identities=24%  Similarity=0.552  Sum_probs=79.6

Q ss_pred             CCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEe-CCeEEeCCCCccCCHHHHHH
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NGRYGFSEPFKFTSVVELIN  289 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~-~~~~~~~~~~~F~sl~~LV~  289 (523)
                      +++.++||||.|+|++||++|.+.++|+||||+|++.+|.|+||++.+++++||+|... +|.|++.+ ..|+||.+||+
T Consensus         5 ~l~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~-~~F~sl~~LV~   83 (100)
T 1r1p_A            5 DIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWT-EKFPSLNKLVD   83 (100)
T ss_dssp             -CTTTTTSCTTCCHHHHHHHHHTSCTTBEEEEECSSSTTCEEEEEECSSSEEEEECEECTTCCEESSS-CEESSHHHHHH
T ss_pred             EeccCCccccCCCHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeC-CEeCCHHHHHH
Confidence            47889999999999999999998899999999999889999999999999999999974 67888875 79999999999


Q ss_pred             HHhhCCccc
Q psy8552         290 YYKHESLSQ  298 (523)
Q Consensus       290 ~y~~~~~~~  298 (523)
                      ||+.+++..
T Consensus        84 ~y~~~~l~~   92 (100)
T 1r1p_A           84 YYRTTSISK   92 (100)
T ss_dssp             HHTTSCSSS
T ss_pred             HHHhCCCCC
Confidence            999998754

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.86  E-value=1.1e-21  Score=165.89  Aligned_cols=95  Identities=27%  Similarity=0.431  Sum_probs=84.9

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCC-CCCeEEeecCC-CCceEEEEEE------CCeeEEEEEEEeCCcEEEecCCCCCCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPST-TGQYALSIVC------SGAPKHCLVYETERGFGFAEPFNIYPS  485 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~-~~G~FLvR~s~-~~~~~Ls~~~------~~~v~h~~I~~~~~~~~~~~~~~~F~s  485 (523)
                      .++.++||| .|+|++||++|+.. ++|+||||.|+ +|.|+||++.      ++.|+||+|...++|.++......|+|
T Consensus         7 ~l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   86 (110)
T 2ekx_A            7 GLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQVGMYTVSLFSKAVNDKKGTVKHYHVHTNAENKLYLAENYCFDS   86 (110)
T ss_dssp             CTTTSSSBCCSCCHHHHHHHHHHTCCTTEEEEEECSSTTCEEEEECCCCSSCSSCCCEEEECEECTTCCEESSTTCCCSC
T ss_pred             cccCCCeecCCCCHHHHHHHHhccCCCceEEEEecCCCCCEEEEEEeccccCCCCcEEEEEEEECCCCCEEECCCCccCC
Confidence            578899999 99999999999866 79999999999 9999999997      479999999998777555544579999


Q ss_pred             HHHHHHHHhhCCccccCCccceeeccccc
Q psy8552         486 LGALVLHYAANSLEEHNDDLKTTLAYPVF  514 (523)
Q Consensus       486 l~~LV~~y~~~~l~~~~~~l~~~L~~pv~  514 (523)
                      |.+||+||++++     +|++++|++||+
T Consensus        87 l~~LV~~y~~~~-----~~l~~~L~~Pv~  110 (110)
T 2ekx_A           87 IPKLIHYHQHNS-----AGMITRLRHPVS  110 (110)
T ss_dssp             HHHHHHHHHHSC-----CSSSCCCCEECC
T ss_pred             HHHHHHHHeeCC-----CCCceecCccCC
Confidence            999999999996     899999999985

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens}

Probab=99.85  E-value=1.6e-21  Score=168.42  Aligned_cols=100  Identities=27%  Similarity=0.474  Sum_probs=89.1

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCC-CCCeEEeecCC-CCceEEEEEE------CCeeEEEEEEEeCCcEEEecCCCCCCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPST-TGQYALSIVC------SGAPKHCLVYETERGFGFAEPFNIYPS  485 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~-~~G~FLvR~s~-~~~~~Ls~~~------~~~v~h~~I~~~~~~~~~~~~~~~F~s  485 (523)
                      .++.++||| .|+|++||++|... .+|+||||.|+ +|.|+||++.      ++.|+||+|...++|.++......|+|
T Consensus         7 ~l~~~~WyhG~isR~eAe~lL~~~g~~G~FLVR~Ss~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   86 (125)
T 2ge9_A            7 SIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSSKAGKYTVSVFAKSTGDPQGVIRHYVVCSTPQSQYYLAEKHLFST   86 (125)
T ss_dssp             SSCCSSSEETTCCHHHHHHHHHHHTCTTEEEEEECSSSCCEEEEEEESSSSSTTCEEEEEECEEETTTEEESSTTSCBSS
T ss_pred             ccccCCccccCCCHHHHHHHHhhcCCCceEEEEecCCCCCEEEEEEeccccCCCCeEEEEEEEEcCCCCEEECCCCcCCC
Confidence            588899999 99999999999866 79999999999 9999999997      479999999998777555555579999


Q ss_pred             HHHHHHHHhhCCccccCCccceeecccccCCCCC
Q psy8552         486 LGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG  519 (523)
Q Consensus       486 l~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~~~  519 (523)
                      |.+||+||+.++     +|++++|+.||+++.+.
T Consensus        87 l~eLV~~y~~~~-----~~l~~~L~~P~~~~~~~  115 (125)
T 2ge9_A           87 IPELINYHQHNS-----AGLISRLKYPVSQQNKN  115 (125)
T ss_dssp             HHHHHHHHHCCC-----TTCSCCSSEECCSSCCC
T ss_pred             HHHHHHHhhhCC-----CCCceeCCCccCCCCCC
Confidence            999999999996     88999999999987554

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=1.7e-21  Score=166.72  Aligned_cols=101  Identities=23%  Similarity=0.286  Sum_probs=88.8

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCC-CCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  490 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~-~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV  490 (523)
                      .++.++||| .|+|++||++|+.. .+|+||||.|+  +|.|+||++.+++|+||+|...++|.++.+. ..|+||.+||
T Consensus        12 ~l~~~~WyhG~isR~~Ae~lL~~~g~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~-~~F~sl~~LI   90 (119)
T 2gsb_A           12 PHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGG-RYYNSIGDII   90 (119)
T ss_dssp             SGGGCSSBCCSSCHHHHHHHHHHTCCSSEEEEEECSSSTTCEEEEEECSSCBCCCCEEEETTTEEEESS-CCBSCHHHHH
T ss_pred             ccccCCcccCCCCHHHHHHHHhhcCCCCeEEEEeCCCCCCceEEEEEECCEEEEEEEEEcCCCCEEECC-cccCCHHHHH
Confidence            478889999 99999999999764 68999999998  8999999999999999999998777666664 7999999999


Q ss_pred             HHHhhCCccccCCccceeecccccCCCCCCc
Q psy8552         491 LHYAANSLEEHNDDLKTTLAYPVFAPASGMT  521 (523)
Q Consensus       491 ~~y~~~~l~~~~~~l~~~L~~pv~~~~~~~~  521 (523)
                      +||++++     .+++++|++||+++.+..+
T Consensus        91 ~~y~~~~-----l~~~~~L~~Pv~~~~~~~p  116 (119)
T 2gsb_A           91 DHYRKEQ-----IVEGYYLKEPVPMQDQSGP  116 (119)
T ss_dssp             HHHTTSC-----SBTTBCCCCCCCCCCCCSS
T ss_pred             HHHhhCc-----cCCCCEeCCccCCCCCCCC
Confidence            9999987     4568999999998766543

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A

Probab=99.85  E-value=1.6e-21  Score=163.46  Aligned_cols=95  Identities=23%  Similarity=0.339  Sum_probs=81.3

Q ss_pred             CCCCcccc-cCCHHHHHHHhcC--CCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeC-Cc--EEEec-CCCCCCCH
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETE-RG--FGFAE-PFNIYPSL  486 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~--~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~-~~--~~~~~-~~~~F~sl  486 (523)
                      ++.++||| .|+|++||++|..  +++|+||||.|+  +|.|+||++.+++|+||+|...+ +|  ++... ....|+||
T Consensus         2 h~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~~F~sl   81 (105)
T 1nrv_A            2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDL   81 (105)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC-----CCEESSTTSSCBSSH
T ss_pred             CccCcccCCCCCHHHHHHHHHhcCCCCceEEEEeCCCCCCCEEEEEEeCCEEEEEEEEEEcCCCCEEEEEcCCCcccCCH
Confidence            56789999 9999999999964  479999999998  89999999999999999999854 44  34343 34789999


Q ss_pred             HHHHHHHhhCCccccCCccceeecccccC
Q psy8552         487 GALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       487 ~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      .+||+||+.++     +|++++|+.||++
T Consensus        82 ~~LV~~y~~~~-----~~l~~~L~~p~~r  105 (105)
T 1nrv_A           82 IQLVDFYQLNK-----GVLPCKLKHHCIR  105 (105)
T ss_dssp             HHHHHHHTTCC-----TTSSSCCCEECCC
T ss_pred             HHHHHHhhhCC-----CCCcEeCCCcCCC
Confidence            99999999986     8899999999975

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A*

Probab=99.85  E-value=1.1e-21  Score=164.05  Aligned_cols=99  Identities=32%  Similarity=0.439  Sum_probs=87.2

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  491 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~  491 (523)
                      +++.++||| .|+|++||.+|.  ++|+||||.|+  +|.|+||++.+++|+||+|. ..+|.+..+ ...|+||.+||+
T Consensus         3 ~l~~~~Wyhg~isR~~Ae~lL~--~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~-~~~g~~~~~-~~~F~sl~~LI~   78 (104)
T 1mil_A            3 QLRGEPWFHGKLSRREAEALLQ--LNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLV-DPEGVVRTK-DHRFESVSHLIS   78 (104)
T ss_dssp             STTTCTTBCSSCCHHHHHTTCC--STTEEEEEECCSSCSSEEEEEEETTEEEEEEEB-CTTSSEECS-SCEESSHHHHHH
T ss_pred             ccccCCcCCCCCCHHHHHHHhc--cCCcEEEEeCCCCCCCEEEEEEECCEEEEEEEE-eCCCEEEEC-CceeCCHHHHHH
Confidence            477889999 999999999998  79999999998  89999999999999999997 444555555 479999999999


Q ss_pred             HHhhCCccccCCccceeecccccCCC
Q psy8552         492 HYAANSLEEHNDDLKTTLAYPVFAPA  517 (523)
Q Consensus       492 ~y~~~~l~~~~~~l~~~L~~pv~~~~  517 (523)
                      ||++++++...+|+.+.|++||+++.
T Consensus        79 ~y~~~~~p~~~~g~~~~L~~Pv~r~~  104 (104)
T 1mil_A           79 YHMDNHLPIISAGSELCLQQPVERKL  104 (104)
T ss_dssp             HHHHHTCCEEETTEEECCCEECCCCC
T ss_pred             HHhhCCCccccCCceEEeCccCCCCC
Confidence            99999877666789999999998863

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus}

Probab=99.85  E-value=7.3e-22  Score=176.14  Aligned_cols=88  Identities=24%  Similarity=0.517  Sum_probs=81.1

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCC-------Ccc
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEP-------FKF  281 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~-------~~F  281 (523)
                      ...++.++||||.|+|++||++|.+.++|+||||+|++.+|.|+||++.++.++||+|...+|.|++.+.       ..|
T Consensus        28 ~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~rI~~~~g~f~l~~~~~~~~~~~~F  107 (152)
T 2hmh_A           28 VRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQXEGGSFSLQSDPRSTQPVPRF  107 (152)
T ss_dssp             HHHHHHTSSEETTCCHHHHHHHHHTSCTTEEEEEECCSTTCSEEEEEEETTEEEEEEEECGGGCBEECBCTTCSSCCCCB
T ss_pred             hhhhccCCCcCCCCCHHHHHHHhcCCCCCcEEEEeCCCCCCcEEEEEEcCCceEEEEEEecCCEEEEecccccccccCcc
Confidence            4567789999999999999999998899999999999889999999999999999999988888999765       889


Q ss_pred             CCHHHHHHHHhhCCc
Q psy8552         282 TSVVELINYYKHESL  296 (523)
Q Consensus       282 ~sl~~LV~~y~~~~~  296 (523)
                      +||.+||+||+.++.
T Consensus       108 ~SL~eLV~~Y~~~~~  122 (152)
T 2hmh_A          108 DXVLKLVHHYMPPQA  122 (152)
T ss_dssp             SSHHHHHHHTCCCCC
T ss_pred             CCHHHHHHHHhhCcc
Confidence            999999999999873

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=99.76  E-value=4.1e-23  Score=206.18  Aligned_cols=171  Identities=20%  Similarity=0.254  Sum_probs=122.5

Q ss_pred             CcCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHH
Q psy8552         208 ETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVE  286 (523)
Q Consensus       208 ~~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~  286 (523)
                      ..+.++.++||||.|+|++||++|.+.++|+||||+|++.+|.|+||++.+++++||+|.+ .+|.|.+.+ ..|.||.+
T Consensus         5 ~~d~~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~-~~F~sl~~   83 (303)
T 2lqn_A            5 RFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGD-QEFDHLPA   83 (303)
Confidence            3567889999999999999999999889999999999988999999999999999999997 566677764 89999999


Q ss_pred             HHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccc-cccCccchhHHHHHHhhcccchhhhhh
Q psy8552         287 LINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRT-FSEPFKFTSVVELINYYKHESLSQYNS  365 (523)
Q Consensus       287 LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~avk~~~~~~l~~~~~  365 (523)
                      ||+||+.+++      .++.|+.||++.......   ...-..-+++..... +..-|..+          .        
T Consensus        84 Lv~~y~~~~~------~~~~L~~P~~r~~~~~~~---~~~~p~~~~~~~~~~~~~alydy~----------~--------  136 (303)
T 2lqn_A           84 LLEFYKIHYL------DTTTLIEPAPRYPSPPMG---SVSAPNLPTAEDNLEYVRTLYDFP----------G--------  136 (303)
Confidence            9999999886      478999999985422110   000000011111111 11111111          0        


Q ss_pred             hhchhccccc--c-ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         366 TLDTRLLYPV--S-RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       366 e~~ar~m~~l--~-~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                          +.-..|  . .+++.+++..+.+||.++.. .+..|++|++++..
T Consensus       137 ----~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~~P~~yv~~  180 (303)
T 2lqn_A          137 ----NDAEDLPFKKGEILVIIEKPEEQWWSARNK-DGRVGMIPVPYVEK  180 (303)
Confidence                111122  2 57777776667899999865 56899999998654

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus}

Probab=99.85  E-value=5.4e-22  Score=178.56  Aligned_cols=103  Identities=22%  Similarity=0.451  Sum_probs=94.0

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCC-------Ccc
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEP-------FKF  281 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~-------~~F  281 (523)
                      ...++.++||||.|+|++||++|.+.++|+||||+|++.+|.|+|||+.+++++||+|...+|.|++.+.       ..|
T Consensus        17 ~~~L~~~~WyhG~IsR~eAe~lL~~~~~GtFLVR~S~s~~g~y~LSvr~~~~v~H~rI~~~~g~f~l~~~~~~~~~~~~F   96 (164)
T 2bbu_A           17 VRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGGSFSLQSDPRSTQPVPRF   96 (164)
T ss_dssp             HHHHHHTSCCCTTSCHHHHHHHHHHSSTTCCEEEECSTTSCCEEEEECCTTCCEEEECEEETTEEESSSCCCCCSSCTTC
T ss_pred             hhhhccCCccCCCCCHHHHHHHhcCCCCCCEEEEECCCCCCCEEEEEEECCceEEEEEEeCCCeEEEecCcccccCCCcc
Confidence            4567789999999999999999988889999999999889999999999999999999998999999765       789


Q ss_pred             CCHHHHHHHHhhCCcccCCCCcceeeccccccC
Q psy8552         282 TSVVELINYYKHESLSQYNSTLDTRLLYPVSRF  314 (523)
Q Consensus       282 ~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~  314 (523)
                      +||.+||+||+.+++.   .++++.|+.|++..
T Consensus        97 ~SL~eLV~~Y~~~~~~---~~~~~~l~ep~~~~  126 (164)
T 2bbu_A           97 DCVLKLVHHYMPPPGT---PSFSLPPTEPSSEV  126 (164)
T ss_dssp             CHHHHHHHHHSCCCSC---SCCSSSCSSCCSSC
T ss_pred             CCHHHHHHHHhhCCCC---CCccccccCCCccc
Confidence            9999999999999884   58999999998753

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus}

Probab=99.85  E-value=1.8e-21  Score=171.79  Aligned_cols=108  Identities=29%  Similarity=0.409  Sum_probs=90.3

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcC-CCCceEEEEcCCC--CCCcEEEEEEECCeeEEEEEEE-eCCe-EEeCC----CC
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLAD-TADGTFLVRDTST--KNGEYTLTLRKGGTNKLIKIFH-RNGR-YGFSE----PF  279 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~--~~g~f~LSv~~~~~v~h~~I~~-~~~~-~~~~~----~~  279 (523)
                      ...++.++||||.|+|++||++|.. .++|+||||+|++  .+|.|+|||+.+++++||+|.. .+|+ |.+.+    ..
T Consensus        17 ~~~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~l~~~~~~~~   96 (141)
T 2eo6_A           17 EAELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEATKQYALGKKKNGEE   96 (141)
T ss_dssp             HHTTTTCSSEEESCCHHHHHHHHHHHCCTTCBCEEECSTTCSSCSEEEEEEETTEEEEEEECEETTTTEECSSSCCTTCC
T ss_pred             ccccCCCCeEecCCCHHHHHHHhhccCCCceEEEEECCCCCCCCCEEEEEEECCEEEEEEEEEeCCCCEEEEccccCCCC
Confidence            4568889999999999999999964 5799999999996  6899999999999999999986 5676 55652    58


Q ss_pred             ccCCHHHHHHHHhhCCcccCC----CCcceeeccccccCCC
Q psy8552         280 KFTSVVELINYYKHESLSQYN----STLDTRLLYPVSRFSS  316 (523)
Q Consensus       280 ~F~sl~~LV~~y~~~~~~~~~----~~l~~~L~~p~~~~~~  316 (523)
                      .|+||.+||+||+.+++..+.    .+..+.|++||.+...
T Consensus        97 ~F~sl~eLV~~y~~~~~~l~~~~~~~~~~~~L~~Pv~~~~~  137 (141)
T 2eo6_A           97 YFGSVVEIVNSHQHNPLVLIDSQNNTKDSTRLKYAVKVSSG  137 (141)
T ss_dssp             CBSSHHHHHHHHHHSCCCCCCSSSCCCCCCCCCCBCCCCCC
T ss_pred             ccCCHHHHHHHHhhCCccceecccCCCCceEeCcCcccCCC
Confidence            899999999999999886521    2236889999987543

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A

Probab=99.85  E-value=2.1e-21  Score=166.15  Aligned_cols=97  Identities=26%  Similarity=0.338  Sum_probs=83.4

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcC--CCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEe-CCc-EEEe-c-CCCCCCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYET-ERG-FGFA-E-PFNIYPS  485 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~--~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~-~~~-~~~~-~-~~~~F~s  485 (523)
                      .++.++||| .|+|++||++|..  +++|+||||.|+  +|.|+||++.+++|+||+|.+. ++| +++. . ....|+|
T Consensus        10 ~~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~~F~s   89 (117)
T 3pqz_A           10 IHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTD   89 (117)
T ss_dssp             GGGGCTTBCCSCCHHHHHHHHHHTTCCTTEEEEEECCC-CCCEEEEEEETTEEEEEEEEEECCTTCCEEESSTTSSCBSS
T ss_pred             hcccCccccCCCCHHHHHHHHhcCCCCCCEEEEEecCCCCCcEEEEEEeCCeeEEEEEEEecCCCCEEEEECCCCcccCC
Confidence            478899999 9999999999964  569999999999  7999999999999999999986 444 3443 2 2479999


Q ss_pred             HHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552         486 LGALVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       486 l~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      |.+||+||+.++     +|++++|++||++.
T Consensus        90 l~~LV~~y~~~~-----~~l~~~L~~P~~~~  115 (117)
T 3pqz_A           90 LLQLVEFHQLNR-----GILPCLLRHCCTRV  115 (117)
T ss_dssp             HHHHHHHHHHCC-----TTSSSCCCEECC--
T ss_pred             HHHHHHHHhhCC-----CCCcEECCCcCccc
Confidence            999999999996     89999999999874

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*

Probab=99.85  E-value=6.3e-22  Score=166.30  Aligned_cols=95  Identities=31%  Similarity=0.487  Sum_probs=83.5

Q ss_pred             CCCCcccc-cCCHHHHHHHhcC--CCCCeEEeecCC--CCceEEEEEE-----CCeeEEEEEEEeCCcEEEecCCCCCCC
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPST--TGQYALSIVC-----SGAPKHCLVYETERGFGFAEPFNIYPS  485 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~--~~~G~FLvR~s~--~~~~~Ls~~~-----~~~v~h~~I~~~~~~~~~~~~~~~F~s  485 (523)
                      ++.++||| .|+|++||.+|..  .++|+||||.|+  +|.|+||++.     ++.|+||+|...++|.++......|+|
T Consensus         2 l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   81 (106)
T 1aot_F            2 IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFET   81 (106)
T ss_dssp             CCSSSSCCBSCCHHHHHHHHHTTTCCTTEECCBCBSSSSSBBCCEEECCBTTTBCCEEECCBEEETTTEEEEETTEEESS
T ss_pred             CccCccCCCCCCHHHHHHHHhhCCCCCcEEEEEeCCCCCCCEEEEEEecccCCCCcEEEEEEEEeCCCCEEECCCCccCC
Confidence            57789999 9999999999964  469999999998  8999999996     789999999997665444444579999


Q ss_pred             HHHHHHHHhhCCccccCCccceeecccccC
Q psy8552         486 LGALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       486 l~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      |.+||+||+.++     +|++++|+.||++
T Consensus        82 l~~LV~~y~~~~-----~~l~~~L~~p~~~  106 (106)
T 1aot_F           82 LQQLVQHYSERA-----AGLSSRLVVPSHK  106 (106)
T ss_dssp             HHHHHHHHTTCC-----TTSSSCSCSSCCC
T ss_pred             HHHHHHHhccCC-----CCCcEeecccCCC
Confidence            999999999986     8999999999975

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1

Probab=99.85  E-value=1.4e-21  Score=163.29  Aligned_cols=93  Identities=27%  Similarity=0.461  Sum_probs=81.8

Q ss_pred             CCcccc-cCCHHHHHHHhcC-CCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEec-----CCCCCCCHHH
Q psy8552         418 EKTWLV-RMSRAQAEALLSG-RPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAE-----PFNIYPSLGA  488 (523)
Q Consensus       418 ~~~W~~-~isr~~Ae~~L~~-~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~-----~~~~F~sl~~  488 (523)
                      .++||| .|+|++||++|.. .++|+||||.|+  +|.|+||++.+++|+||+|.+.++|.++..     ....|+||.+
T Consensus         2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl~~   81 (103)
T 1i3z_A            2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIFPNLQE   81 (103)
T ss_dssp             CCTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECTTSCEEECBCTTSCCCEESSSHH
T ss_pred             CCccccCCCCHHHHHHHHhhcCCCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEECCCCeEEEeccCCCCCcccCCHHH
Confidence            468999 9999999999974 479999999997  899999999999999999998776655544     3578999999


Q ss_pred             HHHHHhhCCccccCCccceeecccccC
Q psy8552         489 LVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       489 LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      ||+||++++     +|+++.|++||++
T Consensus        82 LV~~y~~~~-----~~l~~~L~~P~~R  103 (103)
T 1i3z_A           82 LVSKYGKPG-----QGLVVHLSNPIMR  103 (103)
T ss_dssp             HHHHTTSSS-----SSSSSCCCEECC-
T ss_pred             HHHHHhhCC-----CCCeEEcCCccCC
Confidence            999999985     8999999999975

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=1.6e-21  Score=168.68  Aligned_cols=99  Identities=28%  Similarity=0.433  Sum_probs=87.5

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCC-CCCeEEeecCC-CCceEEEEEE------CCeeEEEEEEEeCCcEEEecCCCCCCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPST-TGQYALSIVC------SGAPKHCLVYETERGFGFAEPFNIYPS  485 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~-~~G~FLvR~s~-~~~~~Ls~~~------~~~v~h~~I~~~~~~~~~~~~~~~F~s  485 (523)
                      .++.++||| .|+|++||.+|... .+|+||||.|+ +|.|+|||+.      ++.|+||+|...++|.++......|+|
T Consensus        12 ~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   91 (125)
T 2dm0_A           12 NLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRHLGSYTISVFMGARRSTEAAIKHYQIKKNDSGQWYVAERHAFQS   91 (125)
T ss_dssp             CCTTSSSBCCSCCHHHHHHHHHHHCSTTCBCEEEETTEEEEEEEEECCCSSSSSCCEEEEEEEECTTCCEESSSSCCCSS
T ss_pred             ccccCCcccCCCCHHHHHHHHhhcCCCCEEEEEecCCCCCEEEEEEeccccCCCCcEEEEEEEEcCCCCEEECCCCccCC
Confidence            588899999 99999999999755 79999999998 9999999998      469999999998777555555579999


Q ss_pred             HHHHHHHHhhCCccccCCccceeecccccCCCC
Q psy8552         486 LGALVLHYAANSLEEHNDDLKTTLAYPVFAPAS  518 (523)
Q Consensus       486 l~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~~  518 (523)
                      |.+||+||++++     +|++++|++||.++..
T Consensus        92 l~eLV~~y~~~~-----~~l~~~L~~P~~~~~~  119 (125)
T 2dm0_A           92 IPELIWYHQHNA-----AGLMTRLRYPVGLMGS  119 (125)
T ss_dssp             HHHHHHHHTTCC-----CSSSCCCCSBCCSSCS
T ss_pred             HHHHHHHhhhCC-----CCCccCCCCccCCCCC
Confidence            999999999996     8899999999998643

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.85  E-value=2.9e-22  Score=200.14  Aligned_cols=162  Identities=22%  Similarity=0.266  Sum_probs=118.7

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE------------------eC
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH------------------RN  270 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~------------------~~  270 (523)
                      ..+++.++||||.|+|++||++|+..++|+||||+|++.+|.|+||++.+++++||+|.+                  .+
T Consensus         5 ~~~~~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~   84 (304)
T 2eyz_A            5 FDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSP   84 (304)
T ss_dssp             CCCSSSSSSCCCCCCSSHHHHTTTTCCSSCEECCSCCSSSSCCEEEECSSSSCEEEECCCCSSCCSSCCCCCCCSSSSSC
T ss_pred             cccccCCCCccCCCCHHHHHHHhcCCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEeeccccccccccccccccccCC
Confidence            567888999999999999999999889999999999998999999999999999999987                  34


Q ss_pred             CeEEeCCCCccCCHHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccc-cccCccchhHH
Q psy8552         271 GRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRT-FSEPFKFTSVV  349 (523)
Q Consensus       271 ~~~~~~~~~~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~  349 (523)
                      +.|.+ +...|.||.+||+||+.+.+     + ++.|+.||++.......         . .+..... +..-|..+   
T Consensus        85 ~~~~~-~~~~F~sl~~LV~~y~~~~l-----~-~~~L~~P~~~~~~~~g~---------~-~~~~~~~~~~alydy~---  144 (304)
T 2eyz_A           85 SRLRI-GDQEFDSLPALLEFYKIHYL-----D-TTTLIEPVSRSRQGSGV---------I-LRQEEAEYVRALFDFN---  144 (304)
T ss_dssp             CCCCB-TTBCCSCHHHHHTTTTTSCC-----S-SSSSCCBCCSCSCCSCC---------C-CCCCCCCEEEECSCCC---
T ss_pred             CeEEe-CCcEECCHHHHHHHhhhCcc-----c-cceeccccccccccccc---------c-CCcccceeEEEEeeec---
Confidence            55655 46899999999999999886     2 68899999985422100         0 0000111 11111111   


Q ss_pred             HHHHhhcccchhhhhhhhchhccccc--c-ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552         350 ELINYYKHESLSQYNSTLDTRLLYPV--S-RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS  410 (523)
Q Consensus       350 ~avk~~~~~~l~~~~~e~~ar~m~~l--~-~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~  410 (523)
                                         |..-..|  . .+++.+++..+.+||.++.. .+..|++|++++.
T Consensus       145 -------------------~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~  188 (304)
T 2eyz_A          145 -------------------GNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-EGKRGMIPVPYVE  188 (304)
T ss_dssp             -------------------CSCSSSCCCCTTCEEEEEECCSSSEEEEECT-TSCEEEEESTTEE
T ss_pred             -------------------CCCCCcCcccCCCEEEEEEecCCCcEEEEeC-CCceeccchhccc
Confidence                               1111123  2 67788877777899998843 4688999999854

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A

Probab=99.85  E-value=2.3e-21  Score=164.61  Aligned_cols=109  Identities=23%  Similarity=0.325  Sum_probs=92.1

Q ss_pred             cccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEe
Q psy8552         400 AFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFA  477 (523)
Q Consensus       400 ~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~  477 (523)
                      ++|++|....     .+..++||| .|+|++||++|.  ++|+||||.|+ ...|+||++.+++|+||+|...++ .+..
T Consensus         2 ~~g~vp~~~~-----~l~~~~WyhG~isR~eAe~lL~--~~G~FLVR~S~~~~~y~LSv~~~~~v~H~~I~~~~g-~~~~   73 (114)
T 1wqu_A            2 SSGSSGEVQK-----PLHEQLWYHGAIPRAEVAELLV--HSGDFLVRESQGKQEYVLSVLWDGLPRHFIIQSLDN-LYRL   73 (114)
T ss_dssp             CCCCCCGGGS-----CGGGCTTEEESCCHHHHHTTCC--STTEEEEEECSSSCCEEEEEEETTEEEEEECEECSS-SEES
T ss_pred             CccccCCccc-----ccccCCcEeeCCCHHHHHHHhc--cCCeEEEEEcCCCCCEEEEEEECCEEEEEEEEecCC-EEEE
Confidence            5788887653     477889999 999999999998  69999999999 449999999999999999998765 4444


Q ss_pred             cCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCCCC
Q psy8552         478 EPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPAS  518 (523)
Q Consensus       478 ~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~~  518 (523)
                      + ...|+||.+||+||+.++.+.+ .++++.|++||+++.+
T Consensus        74 ~-~~~F~sl~~LV~~y~~~~~~~~-~~~~~~L~~Pv~r~~~  112 (114)
T 1wqu_A           74 E-GEGFPSIPLLIDHLLSTQQPLT-KKSGVVLHRAVPSGPS  112 (114)
T ss_dssp             S-SCCBSSHHHHHHHHHHHCCCSC-TTTCCCCCEECCSCTT
T ss_pred             C-CCCCCCHHHHHHHHHHCCCCcC-CCCCcEECcccCCCCC
Confidence            4 4799999999999999865542 4678999999998755

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A

Probab=99.85  E-value=2.3e-21  Score=163.66  Aligned_cols=101  Identities=27%  Similarity=0.403  Sum_probs=82.6

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCC-CCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  490 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~-~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV  490 (523)
                      .++.++||| .|+|++||++|... ++|+||||.|+  +|.|+||++.++.++||+|...++ ++.......|+||.+||
T Consensus         3 ~l~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~-~~~~~~~~~F~sl~~LV   81 (109)
T 3tkz_A            3 HMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGD-YYDLYGGEKFATLAELV   81 (109)
T ss_dssp             ----CCSBCTTCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECSS-CEESSSSCCBSSHHHHH
T ss_pred             ccccCCceecCCCHHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEeCCC-EEEecCCcccCCHHHHH
Confidence            467889999 99999999999754 69999999998  899999999999999999998654 44434457899999999


Q ss_pred             HHHhhCCccc-cCCccceeecccccCC
Q psy8552         491 LHYAANSLEE-HNDDLKTTLAYPVFAP  516 (523)
Q Consensus       491 ~~y~~~~l~~-~~~~l~~~L~~pv~~~  516 (523)
                      +||+++++.. .++|+.++|++||.++
T Consensus        82 ~~y~~~~~~l~~~~gl~~~L~~Pv~~~  108 (109)
T 3tkz_A           82 QYYMEHHGQLKEKNGDVIELKYPLNCA  108 (109)
T ss_dssp             HHHHHSTTSEEETTSCBCCCCEECC--
T ss_pred             HHHHhCcCccccCCCceEECCCcccCC
Confidence            9999997542 2578999999999875

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.85  E-value=6.2e-21  Score=163.36  Aligned_cols=101  Identities=33%  Similarity=0.439  Sum_probs=87.4

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCc-EEEecCCCCCCCHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERG-FGFAEPFNIYPSLGALV  490 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~-~~~~~~~~~F~sl~~LV  490 (523)
                      .+..++||| .|+|++||++|++.++|+||||.|+  ++ |+||++.+++|+||+|...++| |++.+....|+||.+||
T Consensus        12 ~~~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~~-y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~~F~sl~eLV   90 (119)
T 2cs0_A           12 QDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALV   90 (119)
T ss_dssp             SSSCCSSBCSSCCHHHHHHHHHTSCTTCEEEEECSSSSS-EEEEECCSSSCEEEEEEECTTSCEECTTCSCCBSSHHHHH
T ss_pred             cccCCCccccCCCHHHHHHHhcCCCCCEEEEEecCCCCC-EEEEEEECCEEEEEEEEEcCCCcEEEecCCCcCCCHHHHH
Confidence            577889999 9999999999988889999999998  66 9999999999999999998765 44543457999999999


Q ss_pred             HHHhhCCccccCCccceeecccccCCCCCC
Q psy8552         491 LHYAANSLEEHNDDLKTTLAYPVFAPASGM  520 (523)
Q Consensus       491 ~~y~~~~l~~~~~~l~~~L~~pv~~~~~~~  520 (523)
                      +||+++++..    .++.|++||+++.|..
T Consensus        91 ~~y~~~~l~~----~~~~L~~P~~~~~p~~  116 (119)
T 2cs0_A           91 TFHQQKPIEP----RRELLTQPCRQKDSGP  116 (119)
T ss_dssp             HHHTTSCCSS----CCCCCCSBCCCSSCCS
T ss_pred             HHHhhCcCCC----CCCEeCccCCCCCCCC
Confidence            9999998653    2488999999987754

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A

Probab=99.84  E-value=2.4e-21  Score=168.15  Aligned_cols=97  Identities=26%  Similarity=0.355  Sum_probs=85.2

Q ss_pred             CCCCcccc-cCCHHHHHHHhcC-CCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEec-----CCCCCCCH
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAE-----PFNIYPSL  486 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~-~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~-----~~~~F~sl  486 (523)
                      ++.++||| .|+|++||++|.. .++|+||||.|+  +|.|+||++.+++|+||+|.+..+|.++..     ....|+||
T Consensus         1 l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl   80 (128)
T 1ka6_A            1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKI   80 (128)
T ss_dssp             CCCCSSBCCSCCHHHHHHHHHHHCCTTCEEEEECSSSTTCEEEEEESSSCEEEEEEEECTTSCEEEECSTTSCCCEESSH
T ss_pred             CCCCcccCCCCCHHHHHHHHhcCCCCCEEEEeecCCCCCCEEEEEEeCCEEEEEEEEECCCCeEEEeecCCCCCCccCCH
Confidence            35679999 9999999999963 379999999997  899999999999999999998776655544     25799999


Q ss_pred             HHHHHHHhhCCccccCCccceeecccccCCC
Q psy8552         487 GALVLHYAANSLEEHNDDLKTTLAYPVFAPA  517 (523)
Q Consensus       487 ~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~  517 (523)
                      .+||+||++++     +|++++|++||.++.
T Consensus        81 ~~LV~~y~~~~-----~gl~~~L~~P~~~~~  106 (128)
T 1ka6_A           81 KNLISAFQKPD-----QGIVIPLQYPVEKKS  106 (128)
T ss_dssp             HHHHHHTTSSC-----SSSSSCCCSBCCSSC
T ss_pred             HHHHHHHhhCC-----CCCcEEcCCcCCCCC
Confidence            99999999986     889999999998764

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B

Probab=99.84  E-value=3e-21  Score=165.47  Aligned_cols=99  Identities=25%  Similarity=0.392  Sum_probs=85.6

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCC-CCCeEEeecCC-CCceEEEEEEC------CeeEEEEEE--EeCCcEEEecCCCCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPST-TGQYALSIVCS------GAPKHCLVY--ETERGFGFAEPFNIY  483 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~-~~G~FLvR~s~-~~~~~Ls~~~~------~~v~h~~I~--~~~~~~~~~~~~~~F  483 (523)
                      .++.++||| .|+|++||.+|... .+|+||||.|. +|.|+||++..      +.|+||+|.  ...+|.++......|
T Consensus         5 ~l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~~~g~~~~~~~~~F   84 (118)
T 3s9k_A            5 NLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYVAEKYVF   84 (118)
T ss_dssp             CGGGSTTBCTTCCHHHHHHHHHHHCCTTCEEEEECSSTTCEEEEEEECCSCSSSCEEEEEEEEECSCSSCCEEEECSCCC
T ss_pred             ccccCceecCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCEEEEEEecccccCCCceEEEEEeEEECCCCCEEECCCccc
Confidence            478889999 99999999999764 59999999999 99999999997      899999995  345554444445799


Q ss_pred             CCHHHHHHHHhhCCccccCCccceeecccccCCCC
Q psy8552         484 PSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPAS  518 (523)
Q Consensus       484 ~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~~  518 (523)
                      +||.+||+||+.++     +|++++|++||+++.+
T Consensus        85 ~sl~~LV~~y~~~~-----~~l~~~L~~Pv~~~~~  114 (118)
T 3s9k_A           85 DSIPLLIQYHQYNG-----GGLVTRLRYPVCGSPG  114 (118)
T ss_dssp             SCHHHHHHHHHHCC-----TTSSSCCCCCCCCSTT
T ss_pred             CCHHHHHHHheeCC-----CCCccCCCCcCCCCCC
Confidence            99999999999997     8999999999987654

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}

Probab=99.84  E-value=4.1e-21  Score=165.65  Aligned_cols=96  Identities=32%  Similarity=0.458  Sum_probs=84.6

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCC-CCCeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  491 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~-~~G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~  491 (523)
                      .++.++||| .|+|++||++|.+. .+|+||||.|+ ++.|+||++.++.++||+|..++ +++..+....|+||.+||+
T Consensus        15 ~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~g~y~LSv~~~~~v~H~~I~~~~-~~~~~~~~~~F~sl~~LV~   93 (124)
T 2eob_A           15 PHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGTDSYAITFRARGKVKHCRINRDG-RHFVLGTSAYFESLVELVS   93 (124)
T ss_dssp             STTTSTTEESSCCHHHHHHHHHHCCSSSEEEEECCTTSSCEEEEEEETTEEEEEEEEESS-SCEESSSSCCBSSHHHHHH
T ss_pred             ccCcCCCeecCCCHHHHHHHHhcCCCCCEEEEEecCCCCCEEEEEEeCCeEEEEEEEECC-CEEEECCCCcCCCHHHHHH
Confidence            688899999 99999999999876 49999999999 99999999999999999999865 4444555456999999999


Q ss_pred             HHhhCCccccCCccceeecccccCC
Q psy8552         492 HYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       492 ~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      ||++++     .+++++|++||+++
T Consensus        94 ~y~~~~-----~~~~~~L~~P~~~~  113 (124)
T 2eob_A           94 YYEKHA-----LYRKMRLRYPVTPE  113 (124)
T ss_dssp             HHTTSC-----SSSSCCSCEECCHH
T ss_pred             HHhhCC-----CCCCcCCCCcCCcH
Confidence            999997     56799999999864

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens}

Probab=99.84  E-value=3e-21  Score=162.88  Aligned_cols=95  Identities=16%  Similarity=0.136  Sum_probs=78.5

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCC-CCCeEEeecCC-CCceEEEEEE---CCeeEEEEEEEeCCcEEEec--CCCCCCCH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPST-TGQYALSIVC---SGAPKHCLVYETERGFGFAE--PFNIYPSL  486 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~-~~G~FLvR~s~-~~~~~Ls~~~---~~~v~h~~I~~~~~~~~~~~--~~~~F~sl  486 (523)
                      .+..+|||+ +|+|.+||.+|... .+|+||||+|+ .+.|+||++.   .+.|+||+|.+.+ |.+++.  ....|+||
T Consensus        11 ~l~~epWff~~isR~eAE~lL~~~~~~GaFLVR~Se~~~~ySLSVR~~~~~~~VKHYkI~~~~-G~y~I~~~~~~~F~SL   89 (125)
T 3maz_A           11 VLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSDSRNYSITIRQEIDIPRIKHYKVMSVG-QNYTIELEKPVTLPNL   89 (125)
T ss_dssp             CCCCCCTTBCCCCHHHHHHHHHHCGGGCSEEEEECTTSSSEEEEEEECSSSCEEEEEEEEEET-TEEEECSSSCEEESSH
T ss_pred             cccCCCCCcCCCCHHHHHHHHhccCCCCcEEEEeCCCCCCEEEEEEecCCCCCEeeeEEEEeC-CEEEEecCCCcCcCCH
Confidence            366789999 99999999988543 48999999999 6699999998   5799999999985 555554  23579999


Q ss_pred             HHHHHHHhhCCccccCCccceeecccccC
Q psy8552         487 GALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       487 ~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      .|||+||++++     +|++++|.+||..
T Consensus        90 ~eLV~yY~~~a-----dGl~~~L~~~c~~  113 (125)
T 3maz_A           90 FSVIDYFVKET-----RGNLRPFIASTDE  113 (125)
T ss_dssp             HHHHHHHHHHT-----TTCCCBCCC----
T ss_pred             HHHHHHHHhCC-----CcCcccccccccc
Confidence            99999999996     9999999999943

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens}

Probab=99.84  E-value=8.6e-21  Score=163.81  Aligned_cols=106  Identities=22%  Similarity=0.285  Sum_probs=83.5

Q ss_pred             ccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCC--CCCeEEeecCC--CCceEEEEEECCeeEEEEEEEe-CCc-
Q psy8552         401 FTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGR--PDGTFLIRPST--TGQYALSIVCSGAPKHCLVYET-ERG-  473 (523)
Q Consensus       401 ~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~--~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~-~~~-  473 (523)
                      .|.+|...+.    .+..++||| .|+|++||++|...  ++|+||||.|+  +|.|+||++.+++|+||+|... ++| 
T Consensus        12 ~~~~~~~~~~----~l~~~~WyhG~isR~eAe~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~G~   87 (126)
T 2aug_A           12 SGLVPRGSHM----IHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGE   87 (126)
T ss_dssp             --------------CGGGSTTEETTCCHHHHHHHHHTTTCCTTEEEEEECSSSSCCEEEEEEETTEEEEEEEEEEEETTE
T ss_pred             CcccccCCcc----ccccCCcccCCCCHHHHHHHHhccCCCCCEEEEeecCCCCCCEEEEEEcCCeEEEEEEEEECCCCe
Confidence            4555543321    477889999 99999999999754  69999999998  8999999999999999999985 345 


Q ss_pred             EEE-ec-CCCCCCCHHHHHHHHhhCCccccCCccceeecccccC
Q psy8552         474 FGF-AE-PFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       474 ~~~-~~-~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      +++ .. ....|+||.+||+||+.++     +|++++|++||++
T Consensus        88 ~~~~l~~~~~~F~SL~eLV~~y~~~~-----~~l~~~L~~P~~r  126 (126)
T 2aug_A           88 MFHTLDDGHTRFTDLIQLVEFYQLNK-----GVLPCKLKHYCAR  126 (126)
T ss_dssp             EEEESSTTSSCBSSHHHHHHHHTTCC-----TTSSSCCCEECCC
T ss_pred             EEEEeCCCCCccCCHHHHHHHHhhCC-----CCCceecCCCcCC
Confidence            444 22 3468999999999999986     8899999999975

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*

Probab=99.84  E-value=4.1e-21  Score=159.93  Aligned_cols=96  Identities=25%  Similarity=0.371  Sum_probs=83.1

Q ss_pred             CCCcccc-cCCHHHHHHHhc-CCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHH
Q psy8552         417 GEKTWLV-RMSRAQAEALLS-GRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  492 (523)
Q Consensus       417 ~~~~W~~-~isr~~Ae~~L~-~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~  492 (523)
                      +.++||| .|+|++||++|. ..++|+||||.|+  +|.|+||++.+++++||+|...+++|++ +. ..|+||.+||+|
T Consensus         3 ~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~g~~~l-~~-~~F~sl~~LV~~   80 (102)
T 2cia_A            3 LGSEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCI-GQ-RRFHTMDELVEH   80 (102)
T ss_dssp             --CTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEECCSSSCEEEEEEEETTEEEE-TT-EEESSHHHHHHH
T ss_pred             cCCccccCCCCHHHHHHHHhhCCCCcEEEEEECCCCCCCEEEEEEeCCeeEEEEEEecCCEEEE-CC-cCcCCHHHHHHH
Confidence            5679999 999999999994 5579999999998  8999999999999999999965554555 43 699999999999


Q ss_pred             HhhCCccccCCccceeeccccc
Q psy8552         493 YAANSLEEHNDDLKTTLAYPVF  514 (523)
Q Consensus       493 y~~~~l~~~~~~l~~~L~~pv~  514 (523)
                      |+++++..+++|..+.|++|++
T Consensus        81 y~~~~l~~~~~~~~~~L~~Pip  102 (102)
T 2cia_A           81 YKKAPIFTSEHGEKLYLVRALQ  102 (102)
T ss_dssp             HHHSCSEECTTSCEECCCEECC
T ss_pred             HhhCccccCCCCceEEeCCCCC
Confidence            9999998766788999999985

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...

Probab=99.83  E-value=9.9e-21  Score=161.42  Aligned_cols=102  Identities=28%  Similarity=0.374  Sum_probs=85.4

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCC-CCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  490 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~-~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV  490 (523)
                      .++.++||| .|+|++||.+|... ++|+||||.|+  +|.|+||++.+++++||+|.+..+|.++... ..|+||.+||
T Consensus         2 ~L~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~-~~F~sl~eLV   80 (117)
T 3ov1_A            2 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV-VKFNSLNELV   80 (117)
T ss_dssp             -CCCCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSS-CEESSHHHHH
T ss_pred             CcccCCcccCCCCHHHHHHHHhCCCCCCcEEEEeCCCCCCCEEEEEecCCceEEEEEEECCCCeEEECC-CCcCCHHHHH
Confidence            467889999 99999999999875 48999999997  8999999999999999999987777666665 7999999999


Q ss_pred             HHHhhCCccccCCccceeecccccCCCCCC
Q psy8552         491 LHYAANSLEEHNDDLKTTLAYPVFAPASGM  520 (523)
Q Consensus       491 ~~y~~~~l~~~~~~l~~~L~~pv~~~~~~~  520 (523)
                      +||+++++..   +-...|+.|++.|+|+.
T Consensus        81 ~~y~~~~l~~---~~~~~L~~~~~~P~~~~  107 (117)
T 3ov1_A           81 DYHRSTSVSR---NQQIFLRDIEQVPQQPT  107 (117)
T ss_dssp             HHTTTSCSCS---SSCCCCBCCCCCC----
T ss_pred             HHHhhCCCCC---CCceEecCCCcCCCCCc
Confidence            9999999763   33677888888776654

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=99.83  E-value=7.8e-21  Score=186.45  Aligned_cols=109  Identities=30%  Similarity=0.519  Sum_probs=96.0

Q ss_pred             CcCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCC-CCccCCHHH
Q psy8552         208 ETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSE-PFKFTSVVE  286 (523)
Q Consensus       208 ~~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~-~~~F~sl~~  286 (523)
                      ....+..++||||.|+|++||.+|.+.++|+||||.| +.+|.|+|||+.++.|+||+|...+++|++.+ ...|+||.+
T Consensus       187 ~~~~l~~~~WyhG~IsR~eAE~lL~~~~~GtFLVR~S-s~~g~y~LSv~~~~~V~H~rI~~~~~g~~~~~~~~~F~SL~e  265 (302)
T 2y3a_B          187 ALPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTATGFGFAEPYNLYGSLKE  265 (302)
T ss_dssp             -CGGGSSTTTBCCSCCHHHHHHHHTTSCTTBEEBCCC-SSTTCEEEEEECSSSEEEEEEEEETTEEESBTTBCCCSSHHH
T ss_pred             ccccccCCCccCCCCCHHHHHHHhcCCCCCcEEEEec-cCCCceEEEEEeCCeeEEEEEEECCCceEEeCCCCCCCCHHH
Confidence            3466788999999999999999998889999999999 77999999999999999999998888887765 478999999


Q ss_pred             HHHHHhhCCcccCCCCcceeeccccccCCCC
Q psy8552         287 LINYYKHESLSQYNSTLDTRLLYPVSRFSSD  317 (523)
Q Consensus       287 LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~  317 (523)
                      ||+||+.+++...++++++.|+.||++..+.
T Consensus       266 LV~~Y~~~~L~~~~~gl~~~L~~Pv~~~~P~  296 (302)
T 2y3a_B          266 LVLHYQHASLVQHNDALTVTLAHPVRAPGPG  296 (302)
T ss_dssp             HHHTTSSSCSTTTCSSCCCCCSBCSCCCC--
T ss_pred             HHHHHHhCCccccCCCCceeeCCccCCCCCC
Confidence            9999999988766789999999999986443

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C*

Probab=99.83  E-value=6.2e-21  Score=161.34  Aligned_cols=99  Identities=20%  Similarity=0.277  Sum_probs=84.2

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCC---CCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGR---PDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGA  488 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~---~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~  488 (523)
                      .+..++||| .|+|++||++|...   ++|+||||.|+  +|.|+||++.+++++||+|....+|.++.+ ...|+||.+
T Consensus         5 ~l~~~~WyhG~isR~~Ae~lL~~~g~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~-~~~F~sl~~   83 (111)
T 2hdv_A            5 PLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQCRVQ-HLHFQSIFD   83 (111)
T ss_dssp             CGGGSTTEEEECCHHHHHHHHHTTGGGGTTEEEEEECSSCTTEEEEEEEETTEEEEEEEEECTTCCEEET-TEEESSHHH
T ss_pred             ccccCCCcCCCCCHHHHHHHHHHcCCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCCCEEeC-CceeCCHHH
Confidence            477889999 99999999999865   79999999997  899999999999999999998777766665 479999999


Q ss_pred             HHHHHhhCCccccCCc-cceeeccccc
Q psy8552         489 LVLHYAANSLEEHNDD-LKTTLAYPVF  514 (523)
Q Consensus       489 LV~~y~~~~l~~~~~~-l~~~L~~pv~  514 (523)
                      ||+||+++++....+| ..+.|+.||+
T Consensus        84 LV~~y~~~~l~~~~~~~~~v~L~~~v~  110 (111)
T 2hdv_A           84 MLEHFRVHPIPLESGGSSDVVLVSYVP  110 (111)
T ss_dssp             HHHHHTTSCCC-------CCCCCEECC
T ss_pred             HHHHHhhCCcccccCCccceEcccccc
Confidence            9999999999887777 7899999886

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.83  E-value=1.9e-20  Score=171.97  Aligned_cols=100  Identities=32%  Similarity=0.580  Sum_probs=90.3

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEE-----CCeeEEEEEEE-eCCeEEeCCCCc
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRK-----GGTNKLIKIFH-RNGRYGFSEPFK  280 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~-----~~~v~h~~I~~-~~~~~~~~~~~~  280 (523)
                      ...++.++||||.|+|++||++|..  .++|+||||+|++.+|.|+||++.     ++.++||+|.+ .+|.|++.+...
T Consensus        68 ~~~l~~~~w~~g~isr~~ae~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~v~H~~I~~~~~g~~~~~~~~~  147 (175)
T 4d8k_A           68 ANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRIT  147 (175)
T ss_dssp             TTCSTTCTTBCSSCCHHHHHHHHHSTTCCTTCEEEEECSSSTTCEEEEEEEECTTSCEEEEEEEEEECSSSCEESSTTSE
T ss_pred             cccccccceecCcccHHHHHHHHhcCCCCCCEEEEEECCCCCCeEEEEEEeCcccCCCceEEEEEEECCCCCEEECCCCc
Confidence            4557889999999999999999976  579999999999889999999998     78999999987 578899988889


Q ss_pred             cCCHHHHHHHHhhCCcccCCCCcceeecccccc
Q psy8552         281 FTSVVELINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       281 F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      |+||.+||+||+.++.     ++++.|+.||++
T Consensus       148 F~sl~~LV~~y~~~~~-----gl~~~L~~Pc~~  175 (175)
T 4d8k_A          148 FPGLHELVRHYTNASD-----GLCTRLSRPCQT  175 (175)
T ss_dssp             ESSHHHHHHHHHHCCT-----TSSSCCCSBCCC
T ss_pred             cCCHHHHHHHHhhCCC-----CCcccCCCcCCC
Confidence            9999999999999874     899999999973

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.82  E-value=7.5e-21  Score=190.35  Aligned_cols=151  Identities=19%  Similarity=0.253  Sum_probs=114.9

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEECCe---eEEEEEEE-e-C------CeEEe
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGT---NKLIKIFH-R-N------GRYGF  275 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~~~---v~h~~I~~-~-~------~~~~~  275 (523)
                      ..+++.++||||.|+|++||++|++  .++|+||||+| +.+|.|+|||+.+++   |+||+|.+ . +      |.|++
T Consensus        35 ~~~l~~~~Wyhg~i~R~~Ae~lL~~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~g~~~~  113 (308)
T 3qwy_A           35 FDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKI  113 (308)
T ss_dssp             CCGGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEEC-SSTTCEEEEEECCSSSSCEEEEEEEECCCCTTTTCCCCEEE
T ss_pred             cCcccccccccCCCCHHHHHHHHhccCCCCceEEEEcc-CCCCCEEEEEEeCCCCCceEEEEEeeccCCCcCcccceEEE
Confidence            4668889999999999999999986  57899999999 779999999999999   99999987 3 2      77888


Q ss_pred             CCCCccCCHHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhh
Q psy8552         276 SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYY  355 (523)
Q Consensus       276 ~~~~~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~  355 (523)
                      .+ ..|.|+.+||+||+.+++      ..+.|..|++++......                    ..|..+         
T Consensus       114 ~~-~~F~Sl~eLv~~y~~~~~------~~~~L~~P~~~p~~~~~~--------------------al~dy~---------  157 (308)
T 3qwy_A          114 AN-QSFPDIPALLNHFKMRVL------TEASLLAAYKKPIIEVVV--------------------GTFKFT---------  157 (308)
T ss_dssp             TT-EEESSHHHHHHHHHHSCS------SSCCCCEECCCCCCEEEE--------------------ESSCBC---------
T ss_pred             eC-eeeCCHHHHHHHHhhccc------ccchhccccccccceeEE--------------------EeceEc---------
Confidence            75 899999999999999875      356788888764211111                    001100         


Q ss_pred             cccchhhhhhhhchhccccc--c-ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552         356 KHESLSQYNSTLDTRLLYPV--S-RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS  410 (523)
Q Consensus       356 ~~~~l~~~~~e~~ar~m~~l--~-~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~  410 (523)
                                   ++.-..|  . .+++.+++..+.+||.++.. .+..|++|++++.
T Consensus       158 -------------~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~  201 (308)
T 3qwy_A          158 -------------GERETDLPFEQGERLEILSKTNQDWWEARNA-LGTTGLVPANYVQ  201 (308)
T ss_dssp             -------------CSSTTBCCBCTTCEEEEEECCSSSEEEEECT-TSCEEEEEGGGEE
T ss_pred             -------------CCCCCcCcCCCCCEEEEEEcCCCCeEEEEeC-CCCeeEecccccc
Confidence                         0111122  2 67778877677899999863 5578999999876

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A

Probab=99.82  E-value=1.2e-20  Score=164.06  Aligned_cols=95  Identities=31%  Similarity=0.426  Sum_probs=84.8

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEEC---------------CeeEEEEEEEeCCcEEE
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCS---------------GAPKHCLVYETERGFGF  476 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~---------------~~v~h~~I~~~~~~~~~  476 (523)
                      .++.++||| .|+|++||++|+++++|+||||.|+  +|.|+|||+..               +.|+||+|...++|+++
T Consensus        16 ~~~~~~Wyhg~isR~eAe~lL~~~~~G~FLVR~S~s~~g~y~LSv~~~~~~~~~~~~~g~~~~~~v~H~~I~~~~~g~~l   95 (131)
T 2kno_A           16 SDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKGVKI   95 (131)
T ss_dssp             CCCHHHHBCTTCCHHHHHHHHTTSCTTBEEEEECSSSTTEEEEEEECSCCSSSSSSCCSCHHHHHEEEEEEECCSSCCCE
T ss_pred             ccccCCceecCCCHHHHHHHhcCCCCCeEEEecCCCCCCCEEEEEEeCCCCcccccccccccCCceEEEEEEECCCCCEE
Confidence            467789999 9999999999988889999999997  89999999986               38999999998888666


Q ss_pred             e--cCCCCCCCHHHHHHHHhhCCccccCCccceeeccccc
Q psy8552         477 A--EPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVF  514 (523)
Q Consensus       477 ~--~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~  514 (523)
                      .  .....|+||.+||+||+.++     .|++|+|++||.
T Consensus        96 ~g~~~~~~F~SL~eLV~~y~~~~-----~~L~~~L~~P~~  130 (131)
T 2kno_A           96 KGCPSEPYFGSLSALVSQHSISP-----ISLPCCLRIPSK  130 (131)
T ss_dssp             ETCSSCCCCCSHHHHHHTTTTCC-----SSCSSCCBCSSC
T ss_pred             ecCCCCCccCCHHHHHHHHhhCC-----CCCCeECCCcCC
Confidence            3  24578999999999999997     889999999995

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}

Probab=99.82  E-value=2.9e-20  Score=158.04  Aligned_cols=98  Identities=22%  Similarity=0.353  Sum_probs=85.4

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  491 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~  491 (523)
                      .+..++||| .|+|++||++|+  ++|+||||.|+  +|.|+||++.++.|+||+|...+ |.+..+ ...|+||.+||+
T Consensus        13 ~~~~~~WyhG~isR~eAe~lL~--~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-g~y~~~-~~~F~sl~eLV~   88 (116)
T 2kk6_A           13 PLAEQDWYHGAIPRIEAQELLK--KQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVD-NMYRFE-GTGFSNIPQLID   88 (116)
T ss_dssp             CTTTCTTEEESCCHHHHHHTCC--STTCEEEEECTTCTTCEEEEEEETTEEEEEEEEEET-TEEESS-SCEESCHHHHHH
T ss_pred             ccccCCCccCCCCHHHHHHHhc--cCCcEEEEECCCCCCcEEEEEEECCeEEEEEEEecC-CEEEEC-CCEeCCHHHHHH
Confidence            467889999 999999999998  79999999998  88999999999999999999755 444554 479999999999


Q ss_pred             HHhhCCccccCCccceeecccccCCC
Q psy8552         492 HYAANSLEEHNDDLKTTLAYPVFAPA  517 (523)
Q Consensus       492 ~y~~~~l~~~~~~l~~~L~~pv~~~~  517 (523)
                      ||+.++++.. .++++.|++||+++.
T Consensus        89 ~y~~~~~~i~-~~~~~~L~~Pv~r~~  113 (116)
T 2kk6_A           89 HHYTTKQVIT-KKSGVVLLNPIPKDK  113 (116)
T ss_dssp             HHHHTTCCSC-TTTTCCCCSCCCCCC
T ss_pred             HHhhCCCCcc-CCCCCeECcccCCCC
Confidence            9999976653 467899999998873

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*

Probab=99.81  E-value=6e-20  Score=151.03  Aligned_cols=91  Identities=30%  Similarity=0.409  Sum_probs=78.0

Q ss_pred             CCcccc-cCCHHHHHHHhcCCC-CCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHH
Q psy8552         418 EKTWLV-RMSRAQAEALLSGRP-DGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY  493 (523)
Q Consensus       418 ~~~W~~-~isr~~Ae~~L~~~~-~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y  493 (523)
                      +++||| .|+|++||++|...+ +|+||||.|+  +|.|+||++.++.|+||+|..+++|.++... ..|+||.+||+||
T Consensus         2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~-~~F~sl~~LV~~y   80 (96)
T 1jyr_A            2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV-VKFNSLNELVDYH   80 (96)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSS-CEESSHHHHHHHT
T ss_pred             CcceeccCCCHHHHHHHHhcCCCCcEEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCCCEEECC-cccCCHHHHHHHH
Confidence            468999 999999999998876 9999999997  8999999999999999999997776666654 7999999999999


Q ss_pred             hhCCccccCCccceeeccc
Q psy8552         494 AANSLEEHNDDLKTTLAYP  512 (523)
Q Consensus       494 ~~~~l~~~~~~l~~~L~~p  512 (523)
                      +.+++..   +-.+.|+.|
T Consensus        81 ~~~~l~~---~~~~~L~~~   96 (96)
T 1jyr_A           81 RSTSVSR---NQQIFLRDI   96 (96)
T ss_dssp             TSSCSCS---SSCCCCBCC
T ss_pred             hhCCCCC---CCceEecCC
Confidence            9998763   234555543

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens}

Probab=99.81  E-value=1.1e-20  Score=166.79  Aligned_cols=114  Identities=23%  Similarity=0.299  Sum_probs=86.2

Q ss_pred             cccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEec
Q psy8552         402 TNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAE  478 (523)
Q Consensus       402 g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~  478 (523)
                      +..|.++++... .+..++||| .|+|++||++|.+.++|+||||.|+  ++.|+||++.++.++||+|...+++|++.+
T Consensus         8 ~~~~~~~v~~~~-~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~g~~~l~~   86 (141)
T 2vif_A            8 PMDVTSLTEELK-KLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNGRFSFYE   86 (141)
T ss_dssp             ------HHHHHH-HHHHHTCBCCSCCHHHHHHHTTTSCTTCEEEEECSSTTCSEEEEEEETTEEEEEEEEEETTEEEETT
T ss_pred             CCchhhhhcchh-hhccCCCcccCCCHHHHHHHhcCCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEEECCEEEEee
Confidence            344445544433 567789999 9999999999988889999999999  799999999999999999999865566652


Q ss_pred             --CCCCCCCHHHHHHHHhhCCccc----------cCCccceeecccccCC
Q psy8552         479 --PFNIYPSLGALVLHYAANSLEE----------HNDDLKTTLAYPVFAP  516 (523)
Q Consensus       479 --~~~~F~sl~~LV~~y~~~~l~~----------~~~~l~~~L~~pv~~~  516 (523)
                        ....|+||.+||+||+++++..          ...+..+.|++||.+.
T Consensus        87 ~~~~~~F~sl~eLI~~y~~~~~~gl~c~l~~~~~~~~~~~v~L~~Pv~R~  136 (141)
T 2vif_A           87 QPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSATYPVRLTNPVSRF  136 (141)
T ss_dssp             CCSCCCBSSHHHHHHHHHHHHHHTCCEEESCCSTTCCCEECCCCCBCCSS
T ss_pred             cCCCCccCCHHHHHHHHhhCCCCCcceeccccCCCCCccceEeCCCCccc
Confidence              4689999999999999886310          1233466677777653

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.81  E-value=4.2e-20  Score=155.77  Aligned_cols=89  Identities=34%  Similarity=0.478  Sum_probs=77.9

Q ss_pred             cccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCC-----------------cEEEecC
Q psy8552         420 TWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETER-----------------GFGFAEP  479 (523)
Q Consensus       420 ~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~-----------------~~~~~~~  479 (523)
                      +||| .|+|++||++|++.++|+||||.|+  +|.|+||++.+++|+||+|...++                 +.+..+ 
T Consensus         1 ~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~g~~~~~~~l~-   79 (109)
T 1ju5_A            1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIG-   79 (109)
T ss_dssp             CCEETTCCHHHHHHHHTTCCTTEEEEEECSSSTTEEEEEEECSSCEEEEEEECCSSSSCCCCCCSSCCTTCCCCCEEET-
T ss_pred             CccccCCCHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCeEEEEEEEECCCCcccccccccccccccccEEEeC-
Confidence            6999 9999999999988889999999998  899999999999999999998763                 234444 


Q ss_pred             CCCCCCHHHHHHHHhhCCccccCCccceeecccccC
Q psy8552         480 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       480 ~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      ...|+||.+||+||+.+++.      +++|++||++
T Consensus        80 ~~~F~sl~~LV~~y~~~~l~------~~~L~~Pv~r  109 (109)
T 1ju5_A           80 DQEFDSLPALLEFYKIHYLD------TTTLIEPVSR  109 (109)
T ss_dssp             TEEESSHHHHHHHHHHSCSS------SSCCCEESCC
T ss_pred             CcccCCHHHHHHHHhhCCCC------CeecCccCCC
Confidence            47999999999999999754      4689999975

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A

Probab=99.81  E-value=8.3e-20  Score=177.59  Aligned_cols=98  Identities=28%  Similarity=0.457  Sum_probs=89.0

Q ss_pred             CCCCCCCccccCCCHHHHHHHhcCC--CCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHH
Q psy8552         210 NSLRDAEWYWGDISRDDVNDKLADT--ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVE  286 (523)
Q Consensus       210 ~~l~~~~wyhg~isr~~Ae~lL~~~--~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~  286 (523)
                      ..++.++||||.|+|++||++|...  ++|+||||+| +.+|.|+||++.+++++||+|.. .+|.|++.+...|+||.+
T Consensus       154 ~~l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S-~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~  232 (254)
T 2oq1_A          154 TAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPR-KEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQ  232 (254)
T ss_dssp             HGGGGSTTBCSSCCHHHHHHHHHSSCCCTTEEEEEEC-SSTTEEEEEEEETTEEEEEEEEECTTSCEESTTSCCBSSHHH
T ss_pred             cccCCCcccccCCCHHHHHHHHHhcCCCCceEEEEec-CCCCCEEEEEEECCeEEEEEEEEcCCCCEEECCCceECCHHH
Confidence            4467889999999999999999864  8999999999 66999999999999999999997 578898887799999999


Q ss_pred             HHHHHhhCCcccCCCCcceeecccccc
Q psy8552         287 LINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       287 LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      ||+||+.++.     ++++.|+.||++
T Consensus       233 LV~~y~~~~~-----~l~~~L~~p~~r  254 (254)
T 2oq1_A          233 LVEYLKLKAD-----GLIYCLKEACPN  254 (254)
T ss_dssp             HHHHHHHCCT-----TSSSCCCSBCCC
T ss_pred             HHHHHHhCCC-----CCCeeCCccCcC
Confidence            9999999885     789999999975

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.81  E-value=8e-20  Score=166.27  Aligned_cols=106  Identities=24%  Similarity=0.394  Sum_probs=87.5

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCC------CCCCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPF------NIYPS  485 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~------~~F~s  485 (523)
                      .++.++||| .|+|++||++|.+.++|+||||+|+  +|.|+||++.++.++||+|...+++|++.+..      ..|+|
T Consensus        13 ~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~rI~~~~g~~~l~~~~~~~~~~~~F~s   92 (169)
T 2c9w_A           13 ELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIICVKSKLKQFDS   92 (169)
T ss_dssp             HHHHTSCBCTTCCHHHHHHHHTTSCTTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEETTEEEECTTTTTGGGCCCBSC
T ss_pred             hcccCCccccCCCHHHHHHHcCCCCCcEEEEecCCCCCCeEEEEEEECCeeEEEEEEEeCCEEEEccccCccccCCCCCC
Confidence            366789999 9999999999998889999999998  88999999999999999999976666665531      78999


Q ss_pred             HHHHHHHHhhCCccc-------cCCccceeecccccCCCCCC
Q psy8552         486 LGALVLHYAANSLEE-------HNDDLKTTLAYPVFAPASGM  520 (523)
Q Consensus       486 l~~LV~~y~~~~l~~-------~~~~l~~~L~~pv~~~~~~~  520 (523)
                      |.+||+||+++++..       ...++++.|++||.+..+.+
T Consensus        93 l~eLI~~y~~~~~~~~~~~~~~~~~~~~~~L~~P~~~~~~sL  134 (169)
T 2c9w_A           93 VVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKPLYTSAPSL  134 (169)
T ss_dssp             HHHHHHHHHHHTC--------------CCCCCCBCCSSCCCH
T ss_pred             HHHHHHHHHhCcCCCcccccCCCCcCccceecCccccccccH
Confidence            999999999987642       13568999999999877653

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A*

Probab=99.80  E-value=1e-19  Score=176.88  Aligned_cols=98  Identities=26%  Similarity=0.461  Sum_probs=89.2

Q ss_pred             CCCCCCCccccCCCHHHHHHHhcCC--CCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHH
Q psy8552         210 NSLRDAEWYWGDISRDDVNDKLADT--ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVE  286 (523)
Q Consensus       210 ~~l~~~~wyhg~isr~~Ae~lL~~~--~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~  286 (523)
                      ..++.++||||.|+|++||++|...  ++|+||||+| +.+|.|+||++.+++++||+|.. .+|.|++.+...|+||.+
T Consensus       153 ~~~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S-~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~  231 (254)
T 1a81_A          153 TAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRAR-DNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQ  231 (254)
T ss_dssp             TSGGGSTTEEEECCHHHHHHHHHSSCCCTTCEEEEEC-SSSSCEEEEEEETTEEEEEEEEECTTSCEECTTSCCBSCHHH
T ss_pred             cccccCCccccCCCHHHHHHHHHhcCCCCceEEEEec-CCCCCEEEEEEECCEEEEEEEEEcCCCCEEecCCcccCCHHH
Confidence            4567899999999999999999864  8999999999 66999999999999999999997 478899887799999999


Q ss_pred             HHHHHhhCCcccCCCCcceeecccccc
Q psy8552         287 LINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       287 LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      ||+||+.++.     ++++.|+.||++
T Consensus       232 LV~~y~~~~~-----~l~~~L~~p~~r  253 (254)
T 1a81_A          232 LVEHYSYKAD-----GLLRVLTVPCQK  253 (254)
T ss_dssp             HHHHHTTCCT-----TSSSCCCCBCCC
T ss_pred             HHHHHHHCCC-----CCCeecCCcCCC
Confidence            9999999885     789999999986

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*

Probab=99.80  E-value=1.5e-19  Score=149.78  Aligned_cols=85  Identities=32%  Similarity=0.491  Sum_probs=76.1

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  491 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~  491 (523)
                      +++.++||| .|+|++||++|..+++|+||||.|+  +|.|+||++.+++++||+|...++|.++... ..|+||.+||+
T Consensus         5 ~l~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~-~~F~sl~~LV~   83 (100)
T 1r1p_A            5 DIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWT-EKFPSLNKLVD   83 (100)
T ss_dssp             -CTTTTTSCTTCCHHHHHHHHHTSCTTBEEEEECSSSTTCEEEEEECSSSEEEEECEECTTCCEESSS-CEESSHHHHHH
T ss_pred             EeccCCccccCCCHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeC-CEeCCHHHHHH
Confidence            477889999 9999999999998889999999998  8999999999999999999997666555554 79999999999


Q ss_pred             HHhhCCccc
Q psy8552         492 HYAANSLEE  500 (523)
Q Consensus       492 ~y~~~~l~~  500 (523)
                      ||+.+++..
T Consensus        84 ~y~~~~l~~   92 (100)
T 1r1p_A           84 YYRTTSISK   92 (100)
T ss_dssp             HHTTSCSSS
T ss_pred             HHHhCCCCC
Confidence            999998764

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus}

Probab=99.80  E-value=1.4e-19  Score=159.66  Aligned_cols=104  Identities=26%  Similarity=0.227  Sum_probs=84.8

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcC-CCCCeEEeecCC----CCceEEEEEECCeeEEEEEEEeCCc-EEEec----CCCCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPST----TGQYALSIVCSGAPKHCLVYETERG-FGFAE----PFNIY  483 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~-~~~G~FLvR~s~----~~~~~Ls~~~~~~v~h~~I~~~~~~-~~~~~----~~~~F  483 (523)
                      .++.++||| .|+|++||++|.. ..+|+||||.|+    +|.|+|||+.+++|+||+|.+..+| +++.+    ....|
T Consensus        19 ~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~l~~~~~~~~~F   98 (141)
T 2eo6_A           19 ELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYF   98 (141)
T ss_dssp             TTTTCSSEEESCCHHHHHHHHHHHCCTTCBCEEECSTTCSSCSEEEEEEETTEEEEEEECEETTTTEECSSSCCTTCCCB
T ss_pred             ccCCCCeEecCCCHHHHHHHhhccCCCceEEEEECCCCCCCCCEEEEEEECCEEEEEEEEEeCCCCEEEEccccCCCCcc
Confidence            578889999 9999999999963 569999999997    4899999999999999999976555 35544    24799


Q ss_pred             CCHHHHHHHHhhCCccc----cCCccceeecccccCCCC
Q psy8552         484 PSLGALVLHYAANSLEE----HNDDLKTTLAYPVFAPAS  518 (523)
Q Consensus       484 ~sl~~LV~~y~~~~l~~----~~~~l~~~L~~pv~~~~~  518 (523)
                      +||.+||+||+++++..    ...+..++|++||....+
T Consensus        99 ~sl~eLV~~y~~~~~~l~~~~~~~~~~~~L~~Pv~~~~~  137 (141)
T 2eo6_A           99 GSVVEIVNSHQHNPLVLIDSQNNTKDSTRLKYAVKVSSG  137 (141)
T ss_dssp             SSHHHHHHHHHHSCCCCCCSSSCCCCCCCCCCBCCCCCC
T ss_pred             CCHHHHHHHHhhCCccceecccCCCCceEeCcCcccCCC
Confidence            99999999999998543    112237899999987533

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}

Probab=99.78  E-value=8.6e-20  Score=155.84  Aligned_cols=91  Identities=19%  Similarity=0.234  Sum_probs=78.7

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcC-CCCCeEEeecCC--CCceEEEEEE----CCeeEEEEEEEeCCcEEEecCCCCC--C
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPST--TGQYALSIVC----SGAPKHCLVYETERGFGFAEPFNIY--P  484 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~-~~~G~FLvR~s~--~~~~~Ls~~~----~~~v~h~~I~~~~~~~~~~~~~~~F--~  484 (523)
                      ..+.++||| .|+|++||++|.. .++|+||||.|+  +|.|+||++.    ++.|+||+|...+++|++ .....|  +
T Consensus        17 ~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~~~g~~~i-~~~~~F~~~   95 (118)
T 2el8_A           17 RALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGPKYVI-DVEQPFSCT   95 (118)
T ss_dssp             CCSSSCTTCCCCCHHHHHHHHHHSSTTCSBEEEECCSSSSSEEEEECCCBTTBCCCEEECBCCBTTBCCB-SSSSCCCCS
T ss_pred             cccCCCceecCCCHHHHHHHHhhCCCCcEEEEeeCCCCCCceEEEEEEecCCCCcEEEEEEEEcCCEEEE-eCCCeECCC
Confidence            467789999 9999999999953 379999999998  8999999999    899999999985444544 445789  9


Q ss_pred             CHHHHHHHHhhCCccccCCccceeecc
Q psy8552         485 SLGALVLHYAANSLEEHNDDLKTTLAY  511 (523)
Q Consensus       485 sl~~LV~~y~~~~l~~~~~~l~~~L~~  511 (523)
                      ||.+||+||++++     .|++++|.+
T Consensus        96 sL~eLV~~y~~~~-----~gl~~~L~~  117 (118)
T 2el8_A           96 SLDAVVNYFVSHT-----KKALVPFLL  117 (118)
T ss_dssp             SHHHHHHHHHHHS-----SSCCCBCCC
T ss_pred             CHHHHHHHHhhCC-----CCCeEeeec
Confidence            9999999999997     899999875

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus}

Probab=99.78  E-value=1.8e-19  Score=162.11  Aligned_cols=99  Identities=22%  Similarity=0.285  Sum_probs=85.9

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecC------CCCCCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEP------FNIYPS  485 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~------~~~F~s  485 (523)
                      .++.++||| .|+|++||++|++.++|+||||+|+  +|.|+||++.++.++||+|...+++|++...      ...|+|
T Consensus        19 ~L~~~~WyhG~IsR~eAe~lL~~~~~GtFLVR~S~s~~g~y~LSvr~~~~v~H~rI~~~~g~f~l~~~~~~~~~~~~F~S   98 (164)
T 2bbu_A           19 KLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGGSFSLQSDPRSTQPVPRFDC   98 (164)
T ss_dssp             HHHHTSCCCTTSCHHHHHHHHHHSSTTCCEEEECSTTSCCEEEEECCTTCCEEEECEEETTEEESSSCCCCCSSCTTCCH
T ss_pred             hhccCCccCCCCCHHHHHHHhcCCCCCCEEEEECCCCCCCEEEEEEECCceEEEEEEeCCCeEEEecCcccccCCCccCC
Confidence            366789999 9999999999988889999999998  8999999999999999999986554554432      169999


Q ss_pred             HHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552         486 LGALVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       486 l~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      |.+||+||+.+++.   .|+++.|+.|++..
T Consensus        99 L~eLV~~Y~~~~~~---~~~~~~l~ep~~~~  126 (164)
T 2bbu_A           99 VLKLVHHYMPPPGT---PSFSLPPTEPSSEV  126 (164)
T ss_dssp             HHHHHHHHSCCCSC---SCCSSSCSSCCSSC
T ss_pred             HHHHHHHHhhCCCC---CCccccccCCCccc
Confidence            99999999999864   68999999999854

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus}

Probab=99.78  E-value=3.1e-19  Score=159.14  Aligned_cols=101  Identities=23%  Similarity=0.334  Sum_probs=83.1

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCC------CCCCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPF------NIYPS  485 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~------~~F~s  485 (523)
                      .++.++||| .|+|++||++|.+.++|+||||.|+  +|.|+||++.++.++||+|...+++|++....      ..|+|
T Consensus        30 ~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~rI~~~~g~f~l~~~~~~~~~~~~F~S  109 (152)
T 2hmh_A           30 KLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQXEGGSFSLQSDPRSTQPVPRFDX  109 (152)
T ss_dssp             HHHHTSSEETTCCHHHHHHHHHTSCTTEEEEEECCSTTCSEEEEEEETTEEEEEEEECGGGCBEECBCTTCSSCCCCBSS
T ss_pred             hhccCCCcCCCCCHHHHHHHhcCCCCCcEEEEeCCCCCCcEEEEEEcCCceEEEEEEecCCEEEEecccccccccCccCC
Confidence            366789999 9999999999988889999999998  89999999999999999999865556665431      79999


Q ss_pred             HHHHHHHHhhCCc------------cccCCccceeecccccC
Q psy8552         486 LGALVLHYAANSL------------EEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       486 l~~LV~~y~~~~l------------~~~~~~l~~~L~~pv~~  515 (523)
                      |.+||+||+.++.            .....+..+.|+.|+.+
T Consensus       110 L~eLV~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Pl~~  151 (152)
T 2hmh_A          110 VLKLVHHYMPPQALPGSTPKRAYYIYSGGEKIPLVLSRPLSS  151 (152)
T ss_dssp             HHHHHHHTCCCCC---------EEEC----CEEECCCEECCC
T ss_pred             HHHHHHHHhhCcccccccccccceecCCCcceeEEEcccCcC
Confidence            9999999999974            22224567778888754

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.77  E-value=3.1e-19  Score=188.51  Aligned_cols=136  Identities=21%  Similarity=0.234  Sum_probs=118.4

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCC--CCCeEEeecCC--CCc
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGR--PDGTFLIRPST--TGQ  451 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~--~~G~FLvR~s~--~~~  451 (523)
                      .|++.+++..+.+||.++...++..|++|++++++.. .++.++||| .|+|++||.+|+..  .+|+||||.|+  +|.
T Consensus        24 gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~-~le~~~w~~g~~~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~  102 (452)
T 1fmk_A           24 GERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD-SIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGA  102 (452)
T ss_dssp             TCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETT-SGGGSTTEEETCCHHHHHHHHTCTTSCTTEEEEEECSSSTTC
T ss_pred             CCEEEEeccCCCCceEEEEcCCCcccccCcccccccc-cccccccccCCccHHHHHHHhccCCCCCceEEEEeCCCCCCc
Confidence            6788887777889999998777899999999988766 688899999 99999999999754  57999999998  899


Q ss_pred             eEEEEEE-----CCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCCCC
Q psy8552         452 YALSIVC-----SGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPAS  518 (523)
Q Consensus       452 ~~Ls~~~-----~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~~  518 (523)
                      |+||++.     ++.++||+|...++|.++......|+|+.+||+||+.+.     +|+++.|..||+...|
T Consensus       103 y~lsv~~~~~~~~~~v~h~~I~~~~~g~~~~~~~~~F~Sl~~Li~~y~~~~-----~~l~~~l~~~~~~~~~  169 (452)
T 1fmk_A          103 YCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHA-----DGLCHRLTTVCPTSKP  169 (452)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSEESSHHHHHHHHTTCC-----TTSSSCCCEECCCCCC
T ss_pred             eEEEEEeeccCCCCcEEEEEEEEcCCCCEEEecCcccCCHHHHHHHhhhcc-----ccchhhcccccccccc
Confidence            9999997     678999999998777666666678999999999999875     8999999999976544

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.77  E-value=2.2e-19  Score=164.76  Aligned_cols=99  Identities=25%  Similarity=0.370  Sum_probs=85.6

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCC---CCCCCHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPF---NIYPSLGA  488 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~---~~F~sl~~  488 (523)
                      .++.++||| .|+|++||++|.++++|+||||+|+  ++.|+||++.+++++||+|...+++|++....   ..|+||.+
T Consensus        30 ~l~~~~WYhG~isR~eAE~lL~~~~dGtFLVR~S~~~~~~lsLSvr~~~~v~H~rI~~~~g~f~l~~~~~~~~~F~SL~e  109 (187)
T 2izv_A           30 QINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPDITG  109 (187)
T ss_dssp             HHHHCTTEEEECCHHHHHHHHTTCCTTEEEEEECSSTTCSEEEEEEETTEEEEEECEEETTEEESCTTCTTSCCBSSHHH
T ss_pred             hcccCCccccCCCHHHHHHHhcCCCCCcEEEEECCCCCceEEEEEeeCCeEEEEEEEECCCEEEEeccCCCccccCCHHH
Confidence            467789999 9999999999998889999999999  66899999999999999999986666665432   37999999


Q ss_pred             HHHHHhhCCccccCCcc--ceeecccccCCCC
Q psy8552         489 LVLHYAANSLEEHNDDL--KTTLAYPVFAPAS  518 (523)
Q Consensus       489 LV~~y~~~~l~~~~~~l--~~~L~~pv~~~~~  518 (523)
                      ||+||++++     .++  .+.|++||.+..|
T Consensus       110 LV~hY~~~~-----~~~~~~~~L~~Pv~r~~p  136 (187)
T 2izv_A          110 LLEHYKDPS-----ACMFFEPLLSTPLIRTFP  136 (187)
T ss_dssp             HHHHTCCGG-----GCCTTSCCCCEECCCCSC
T ss_pred             HHHHHHhcc-----cccccccccccccccccc
Confidence            999999987     444  4899999998765

>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*

Probab=99.77  E-value=1.1e-18  Score=168.41  Aligned_cols=96  Identities=27%  Similarity=0.553  Sum_probs=84.7

Q ss_pred             CCCCCCccccCCCHHHHHHHhcCC-CCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHH
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELIN  289 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~~~-~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~  289 (523)
                      .++.++||||.|+|++||++|.+. .+|+||||.|+. +|.|+||++.+++++||+|..+++.|.+. ...|+||.+||+
T Consensus       118 ~~~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~s~~-~g~y~Lsv~~~~~v~H~~I~~~~~~~~~~-~~~F~sL~~Lv~  195 (246)
T 4fbn_A          118 AHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNE-PNSYAISFRAEGKIKHCRVQQEGQTVMLG-NSEFDSLVDLIS  195 (246)
T ss_dssp             GGGGSTTEESSCCHHHHHHHHHTSCCTTEEEEEECSS-TTEEEEEEEETTEEEEEEEEEETTEEEET-TEEESCHHHHHH
T ss_pred             CcccCCeeecCccHHHHHHHHhhCCCCCeEEEEecCC-CCCEEEEEEeCCCeEEEEEEeCCCEEEeC-CCccCCHHHHHH
Confidence            356789999999999999999875 489999999855 89999999999999999999876666554 578999999999


Q ss_pred             HHhhCCcccCCCCcceeecccccc
Q psy8552         290 YYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       290 ~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      ||+.+++     ++.+.|++||.+
T Consensus       196 ~y~~~p~-----~~~~~L~~Pv~~  214 (246)
T 4fbn_A          196 YYEKHPL-----YRKMKLRYPINE  214 (246)
T ss_dssp             HHHHSCS-----BTTBCCCEECSH
T ss_pred             HhCcCCC-----CCCcCCCCcCCC
Confidence            9999987     578999999986

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.76  E-value=2.4e-19  Score=171.76  Aligned_cols=104  Identities=30%  Similarity=0.437  Sum_probs=88.5

Q ss_pred             cccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCC------
Q psy8552         402 TNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETER------  472 (523)
Q Consensus       402 g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~------  472 (523)
                      |++|.|+.     .++.++||| .|+|++||++|++..+|+||||.|+  +|.|+||++.+++|+||+|...++      
T Consensus         1 g~i~~~~~-----~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~   75 (230)
T 2dvj_A            1 GAMAGNFD-----SEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPP   75 (230)
T ss_dssp             --CCSCCC-----SSSSSSSCCSSCCTTHHHHHHTTSSSSCBEEECCSSCTTSCEEECCCSSSCCCEECBCCCSCCSSSS
T ss_pred             CCcCcccc-----cccCCCcccCCCCHHHHHHHhcCCCCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEeCCCCccccc
Confidence            67888875     477789999 9999999999988789999999998  899999999999999999998763      


Q ss_pred             -----------cEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCCC
Q psy8552         473 -----------GFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA  517 (523)
Q Consensus       473 -----------~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~  517 (523)
                                 +.++.+ ...|+||.+||+||+++++.      ++.|++||.++.
T Consensus        76 ~~~~~~~g~~~~~~~~~-~~~F~sl~~LV~~y~~~~l~------~~~L~~Pv~~~~  124 (230)
T 2dvj_A           76 SPAQPPPGVSPSRLRIG-DQEFDSLPALLEFYKIHYLD------TTTLIEPVSRSR  124 (230)
T ss_dssp             SSSSTTTSCCCCCEESS-SCEESSHHHHHTTSTTTCSS------SSCCCCBCCSCC
T ss_pred             ccccccccccceEEEeC-CceeCCHHHHHHHHhhCccc------cccccccccccc
Confidence                       345554 47999999999999998732      688999998764

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.76  E-value=7.4e-19  Score=187.74  Aligned_cols=167  Identities=21%  Similarity=0.307  Sum_probs=133.2

Q ss_pred             CcCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHH
Q psy8552         208 ETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVE  286 (523)
Q Consensus       208 ~~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~  286 (523)
                      ...+++.++||||.|+|++||.+|....+|+||||+|+..+|.|+||++.++.++||+|.. .+|.|++.....|.|+.+
T Consensus        98 ~~~~le~~~wyhg~i~r~~ae~ll~~~~~G~fLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~g~~~~~~~~~F~sl~e  177 (495)
T 1opk_A           98 PVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAE  177 (495)
T ss_dssp             ESSSGGGSTTEEEECCHHHHHHHGGGCCTTEEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSTTSCBSSHHH
T ss_pred             ccccccchhhhccCCCHHHHHHHhhCCCCceEEEEeCCCCCCceEEEEeeCCeEEEEEEEecCCCceEeccCccchhHHH
Confidence            3566788999999999999999998888999999999988999999999999999999997 577888888889999999


Q ss_pred             HHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCccccccc-----ccCccc--------hhHHHHHH
Q psy8552         287 LINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTF-----SEPFKF--------TSVVELIN  353 (523)
Q Consensus       287 LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~--------~~~~~avk  353 (523)
                      ||+||....     +++++.|..|+++....... ......+.|++.....+.     .|.||.        ....||+|
T Consensus       178 Lv~~~~~~~-----~g~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK  251 (495)
T 1opk_A          178 LVHHHSTVA-----DGLITTLHYPAPKRNKPTIY-GVSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVK  251 (495)
T ss_dssp             HHHHHTTCC-----TTSSSCCCEECCCCSCCCCS-SSCSSSSCCBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEE
T ss_pred             Hhhhhcccc-----cccchhcccccccccccccc-ccCccccccccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEE
Confidence            999998776     37888888888764433322 112234667776654444     566666        34568899


Q ss_pred             hhccc--chhhhhhhhchhcccccc-cccccc
Q psy8552         354 YYKHE--SLSQYNSTLDTRLLYPVS-RFSSDV  382 (523)
Q Consensus       354 ~~~~~--~l~~~~~e~~ar~m~~l~-~~~~~l  382 (523)
                      .++.+  ..+++.+|  +++|+.++ |+++++
T Consensus       252 ~~~~~~~~~~~~~~E--~~~l~~l~hpniv~l  281 (495)
T 1opk_A          252 TLKEDTMEVEEFLKE--AAVMKEIKHPNLVQL  281 (495)
T ss_dssp             ECCSSSSCHHHHHHH--HHHHHHCCCTTBCCE
T ss_pred             EecCcccchHHHHHH--HHHHHhcCCCCEeeE
Confidence            88755  34558888  78999998 999998

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=99.75  E-value=1.1e-18  Score=176.62  Aligned_cols=103  Identities=28%  Similarity=0.500  Sum_probs=92.3

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC---CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST---TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  490 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~---~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV  490 (523)
                      .++.++||| .|+|.+||.+|.+.++|+||||.|+   +|.|+|||+.++.++||+|...+++|++. ....|+||.+||
T Consensus         6 sL~~~~WYhG~IsR~eAE~lL~~~~dG~FLVR~S~s~~~g~y~LSvr~~~~v~H~rI~~~~g~y~l~-~~~~F~SL~eLV   84 (373)
T 3hhm_B            6 SLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFS-DPLTFSSVVELI   84 (373)
T ss_dssp             GGGGCTTEEESCCHHHHHHHTTTCCTTEEEEEECSCC--CCEEEEEEETTEEEEEEECCSSSCBCSS-SSCCBSSSHHHH
T ss_pred             CcccCCccCCCCCHHHHHHHhcCCCCCCEEEeccCCCCCCCEEEEEEECCeeEEEEEEecCCeEEeC-CCCCcCCHHHHH
Confidence            478889999 9999999999998899999999998   58999999999999999999877666664 447899999999


Q ss_pred             HHHhhCCccccCCccceeecccccCCCC
Q psy8552         491 LHYAANSLEEHNDDLKTTLAYPVFAPAS  518 (523)
Q Consensus       491 ~~y~~~~l~~~~~~l~~~L~~pv~~~~~  518 (523)
                      +||+.+++...++|++++|++||+++..
T Consensus        85 ~~Y~~~~l~~~~~gl~~~L~~Pv~r~~q  112 (373)
T 3hhm_B           85 NHYRNESLAQYNPKLDVKLLYPVSKYQQ  112 (373)
T ss_dssp             HHHHHSCGGGSCTTCCCCCCEECCSCCC
T ss_pred             HHHhhCCccccCCCCCcccCCCCCCcch
Confidence            9999999988889999999999998543

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.75  E-value=1e-18  Score=186.66  Aligned_cols=132  Identities=24%  Similarity=0.283  Sum_probs=115.3

Q ss_pred             ccccccccc-cccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCce
Q psy8552         377 RFSSDVDAD-IHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQY  452 (523)
Q Consensus       377 ~~~~~l~k~-~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~  452 (523)
                      .+++.+++. ++.+||.++..  +..|++|++++.+.. .++.++||| .|+|.+||.+|....+|+||||.|+  +|.|
T Consensus        65 gd~~~v~~~~~~~~w~~~~~~--~~~G~~P~~yv~~~~-~le~~~wyhg~i~r~~ae~ll~~~~~G~fLvR~s~~~~~~~  141 (495)
T 1opk_A           65 GEKLRVLGYNHNGEWCEAQTK--NGQGWVPSNYITPVN-SLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQR  141 (495)
T ss_dssp             TCEEEEEEECTTSSEEEEECS--SCEEEEEGGGEEESS-SGGGSTTEEEECCHHHHHHHGGGCCTTEEEEEECSSSTTCE
T ss_pred             CCEEEEeecCCCCCceeeeec--CCcceeccccccccc-cccchhhhccCCCHHHHHHHhhCCCCceEEEEeCCCCCCce
Confidence            677777543 37799998865  467999999988766 788999999 9999999999987779999999998  8999


Q ss_pred             EEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552         453 ALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       453 ~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      +||++.++.|+||+|...++|.++......|+|+.+||+||+..+     +|+++.|.+|+++.
T Consensus       142 ~lsv~~~~~v~h~~I~~~~~g~~~~~~~~~F~sl~eLv~~~~~~~-----~g~~~~l~~~~~~~  200 (495)
T 1opk_A          142 SISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVA-----DGLITTLHYPAPKR  200 (495)
T ss_dssp             EEEEEETTEEEEEECEECTTSCEESSTTSCBSSHHHHHHHHTTCC-----TTSSSCCCEECCCC
T ss_pred             EEEEeeCCeEEEEEEEecCCCceEeccCccchhHHHHhhhhcccc-----cccchhcccccccc
Confidence            999999999999999998777777666678999999999998875     89999999999764

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=1.1e-18  Score=150.11  Aligned_cols=112  Identities=19%  Similarity=0.255  Sum_probs=91.1

Q ss_pred             ccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCCC-CCeEEeecCC-CCceEEEEEEC--
Q psy8552         385 DIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGRP-DGTFLIRPST-TGQYALSIVCS--  459 (523)
Q Consensus       385 ~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~~-~G~FLvR~s~-~~~~~Ls~~~~--  459 (523)
                      +.+.+||+        .+++|+|+++... .++.++||| -+.        .+.. ||+||||.|+ +|.|+|||+.+  
T Consensus         5 ~~~~~~~~--------~~~iPsnyv~~~~-~l~~~~Wyh~Ll~--------~g~~~dG~FLVR~S~~~g~y~LSv~~~~~   67 (126)
T 2cr4_A            5 SSGEDYEK--------VPLPNSVFVNTTE-SCEVERLFKATSP--------RGEPQDGLYCIRNSSTKSGKVLVVWDETS   67 (126)
T ss_dssp             CCCCCCCS--------CSSCTTTBCSCCC-HHHHHHHHHHHST--------TSCCCTTCEEEEECSSTTCEEEEEEETTT
T ss_pred             CCCCCeEE--------cCCCCHhhcCccc-ccccCCCHHHHhh--------CCCCCCCeEEEEecCCCCCEEEEEEeCCC
Confidence            34557775        5889999998766 688899999 222        2333 6999999999 99999999999  


Q ss_pred             CeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCCC
Q psy8552         460 GAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA  517 (523)
Q Consensus       460 ~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~  517 (523)
                      ++|+||+|...+++++ ......|+||.+||+||++++++.+   ..+.|++||.++.
T Consensus        68 ~~vkH~rI~~~~~~~~-i~~~~~F~sL~eLV~hY~~~~l~~~---~~~~L~~P~~~~~  121 (126)
T 2cr4_A           68 NKVRNYRIFEKDSKFY-LEGEVLFVSVGSMVEHYHTHVLPSH---QSLLLRHPYGYTS  121 (126)
T ss_dssp             TEECCEECEEETTEEE-SSSSCEESSHHHHHHHHTTSCCSSS---SSCCCCSBSSCCC
T ss_pred             CCEEEEEEEECCCeEE-EcCCccCCCHHHHHHHHhhCCcCCC---CCEEeCCcCCCCC
Confidence            9999999998887554 4445789999999999999998863   4678999998653

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.75  E-value=8.8e-19  Score=184.92  Aligned_cols=165  Identities=17%  Similarity=0.250  Sum_probs=128.2

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHH
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELI  288 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV  288 (523)
                      ...++.++||||.|+|++||++|....+|+||||.|++.+|.|+||++.++.++||+|...+++|++.....|.|+.+||
T Consensus        74 ~~~~~~~~wyhg~i~r~~ae~~L~~~~~G~FlvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~~~i~~~~~F~sl~eLv  153 (450)
T 1k9a_A           74 GTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVYFENLMQLV  153 (450)
T ss_dssp             CTTEESCTTBCTTCCHHHHHHHTCSCCTTEEEEEECSSSTTSEEEEEECSSSEEEEEEEEETTEEESSSSSCBSSHHHHH
T ss_pred             ccccccccccccCcCHHHhhhhhccCCCceEEEEecCCCCCceEEEEEeCCeeeEEEEEecCCceEeccccccccHHHHH
Confidence            35568899999999999999999877889999999999899999999999999999998889999998889999999999


Q ss_pred             HHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCccccccc-----ccCccc------hhHHHHHHhhcc
Q psy8552         289 NYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTF-----SEPFKF------TSVVELINYYKH  357 (523)
Q Consensus       289 ~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~------~~~~~avk~~~~  357 (523)
                      +||+....     +++..|..|+.........  .......|++.....+.     .|.||.      ....+|+|.++.
T Consensus       154 ~~y~~~~~-----~~~~~l~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~vavK~~~~  226 (450)
T 1k9a_A          154 EHYTTDAD-----GLCTRLIKPKVMEGTVAAQ--DEFYRSGWALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKN  226 (450)
T ss_dssp             HHHHHCCT-----TSSSCCCEECCCTTCEEHH--HHHHHTTCBCCGGGEEEEEEEEECSSEEEEEEEETTEEEEEEEESS
T ss_pred             hhhccccc-----chhhhccccccccCcccch--hhhcccccccChHHeEEEeeecCcCCeeEEEEEecCCeEEEEEeCC
Confidence            99998764     6778888877653221111  00012345555443333     556665      334688998876


Q ss_pred             cc-hhhhhhhhchhcccccc-cccccc
Q psy8552         358 ES-LSQYNSTLDTRLLYPVS-RFSSDV  382 (523)
Q Consensus       358 ~~-l~~~~~e~~ar~m~~l~-~~~~~l  382 (523)
                      +. .+.+.+|  +++|+.++ |+++++
T Consensus       227 ~~~~~~~~~E--~~~l~~l~h~niv~~  251 (450)
T 1k9a_A          227 DATAQAFLAE--ASVMTQLRHSNLVQL  251 (450)
T ss_dssp             CTTSHHHHHH--HHHHHTCCCTTBCCE
T ss_pred             chHHHHHHHH--HHHHHhccCCCEEEE
Confidence            53 3447888  79999998 999998

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.75  E-value=9.8e-19  Score=188.56  Aligned_cols=136  Identities=21%  Similarity=0.234  Sum_probs=116.1

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcCC--CCCeEEeecCC--CCc
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSGR--PDGTFLIRPST--TGQ  451 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~~--~~G~FLvR~s~--~~~  451 (523)
                      .|++.+++..+.+||.++...++..|++|++|++... .++.++||| .|+|++||.+|+..  .+|+||||.|+  +|.
T Consensus       107 gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~-~l~~~~wy~g~i~r~~ae~~L~~~~~~~G~FLvR~S~~~~g~  185 (535)
T 2h8h_A          107 GERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD-SIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGA  185 (535)
T ss_dssp             TCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEETT-SGGGSTTBCCSCCHHHHHHHHTCTTCCTTEEEEEECSSSTTC
T ss_pred             CCEEEEEEecCCCceEEEECCCCcceEecchhhcccc-cccccceeccccCHHHHHHHhccCCCCCCeEEEEecCCCCCc
Confidence            6788887777889999998877899999999988765 678899999 99999999999754  57999999998  899


Q ss_pred             eEEEEEE-----CCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCCCC
Q psy8552         452 YALSIVC-----SGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPAS  518 (523)
Q Consensus       452 ~~Ls~~~-----~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~~  518 (523)
                      |+|||+.     ++.++||+|...++|.++......|.||.+||+||+++.     +|+++.|..+|....|
T Consensus       186 y~lsv~~~~~~~~~~v~h~~I~~~~~g~~~i~~~~~F~SL~eLv~~y~~~~-----~~~~~~l~~~~~~~~~  252 (535)
T 2h8h_A          186 YCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHA-----DGLCHRLTTVCPTSKP  252 (535)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEBC-CCSCEEEETTEEESSHHHHHHHHHHCC-----TTSSSCCCEECCCCCC
T ss_pred             EEEEEEeeccCCCCceEEEEEEEcCCCcEEeeccccccChHHhheeecccc-----Cccccccccccccccc
Confidence            9999996     568999999987766555555578999999999999985     8999999999976443

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.74  E-value=2e-18  Score=182.24  Aligned_cols=163  Identities=22%  Similarity=0.343  Sum_probs=128.2

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEE-----CCeeEEEEEEE-eCCeEEeCCCCc
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRK-----GGTNKLIKIFH-RNGRYGFSEPFK  280 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~-----~~~v~h~~I~~-~~~~~~~~~~~~  280 (523)
                      ..+++.++||||.|+|++||++|+.  .++|+||||.|+..+|.|+|||+.     ++.++||+|.+ .+|+|++.+...
T Consensus        59 ~~~le~~~w~~g~~~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~~g~~~~~~~~~  138 (452)
T 1fmk_A           59 SDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQ  138 (452)
T ss_dssp             TTSGGGSTTEEETCCHHHHHHHHTCTTSCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSE
T ss_pred             cccccccccccCCccHHHHHHHhccCCCCCceEEEEeCCCCCCceEEEEEeeccCCCCcEEEEEEEEcCCCCEEEecCcc
Confidence            4567789999999999999999986  367999999999889999999996     67899999997 567899988889


Q ss_pred             cCCHHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCccccccc-----ccCccc-------hhH
Q psy8552         281 FTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTF-----SEPFKF-------TSV  348 (523)
Q Consensus       281 F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~-------~~~  348 (523)
                      |.|+.+||+||+....     +++..|..||+......    .....+.|+++....+.     .|.||.       ...
T Consensus       139 F~Sl~~Li~~y~~~~~-----~l~~~l~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~  209 (452)
T 1fmk_A          139 FNSLQQLVAYYSKHAD-----GLCHRLTTVCPTSKPQT----QGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTT  209 (452)
T ss_dssp             ESSHHHHHHHHTTCCT-----TSSSCCCEECCCCCCCC----SSSSTTCSBCCGGGEEEEEEEEECSSCEEEEEEETTTE
T ss_pred             cCCHHHHHHHhhhccc-----cchhhcccccccccccc----CCCCccccccChhHceeeeeecCCCCeEEEEEEECCCc
Confidence            9999999999988764     77888888887532211    12234567776654443     566766       223


Q ss_pred             HHHHHhhcccc--hhhhhhhhchhcccccc-cccccc
Q psy8552         349 VELINYYKHES--LSQYNSTLDTRLLYPVS-RFSSDV  382 (523)
Q Consensus       349 ~~avk~~~~~~--l~~~~~e~~ar~m~~l~-~~~~~l  382 (523)
                      .||+|.++.+.  .+++++|  +++|+.++ |+++++
T Consensus       210 ~vavK~~~~~~~~~~~~~~E--~~~l~~l~hp~iv~~  244 (452)
T 1fmk_A          210 RVAIKTLKPGTMSPEAFLQE--AQVMKKLRHEKLVQL  244 (452)
T ss_dssp             EEEEEECCTTSSCHHHHHHH--HHHHHHCCCTTBCCE
T ss_pred             eEEEEEeccCCCCHHHHHHH--HHHHHhCCCCCEeeE
Confidence            48899887653  3458888  78999998 999988

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.72  E-value=5.4e-18  Score=179.03  Aligned_cols=135  Identities=24%  Similarity=0.299  Sum_probs=115.2

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhc--CCCCCeEEeecCC--CCc
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPST--TGQ  451 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~--~~~~G~FLvR~s~--~~~  451 (523)
                      .+++.+++. +.+||.++...++..|++|+++++... .++.++||| .|+|++||.+|.  ++.+|+||||.|+  +|.
T Consensus        30 gd~~~v~~~-~~~W~~~~~~~~g~~G~~P~~yv~~~~-~le~~~W~~g~i~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~  107 (454)
T 1qcf_A           30 GDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVD-SLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGS  107 (454)
T ss_dssp             TCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETT-CGGGSTTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTS
T ss_pred             CCEEEEEec-CCCCeEEEECCCCceEEecchhccccc-ccccccccccccchhhhhhhhhcCCCCCceEEEEECcCCCCe
Confidence            567777554 368999998777899999999988766 688899999 999999999995  4579999999997  999


Q ss_pred             eEEEEEE-----CCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCCCC
Q psy8552         452 YALSIVC-----SGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPAS  518 (523)
Q Consensus       452 ~~Ls~~~-----~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~~  518 (523)
                      |+||++.     ++.++||+|...++|.++......|.|+.+||+||++..     +|++..|..||....|
T Consensus       108 y~lsv~~~~~~~~~~v~H~~I~~~~~g~~~i~~~~~F~sl~eLv~~y~~~~-----~~l~~~~~~~~~~~~~  174 (454)
T 1qcf_A          108 YSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHYKKGN-----DGLCQKLSVPCMSSKP  174 (454)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEECTTSCEESSSSSCBSSHHHHHHHHTSSC-----TTSSSCCCSBCCCCCC
T ss_pred             EEEEEEecccCCCCceEEEEEEEcCCCcEEEeCccccCCHHHHHHHHHhcc-----CCccccccccccccCc
Confidence            9999998     678999999987777666666679999999999999985     8899999999876544

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.72  E-value=3.9e-18  Score=183.88  Aligned_cols=164  Identities=22%  Similarity=0.341  Sum_probs=128.3

Q ss_pred             CcCCCCCCCccccCCCHHHHHHHhcCC--CCceEEEEcCCCCCCcEEEEEEE-----CCeeEEEEEEE-eCCeEEeCCCC
Q psy8552         208 ETNSLRDAEWYWGDISRDDVNDKLADT--ADGTFLVRDTSTKNGEYTLTLRK-----GGTNKLIKIFH-RNGRYGFSEPF  279 (523)
Q Consensus       208 ~~~~l~~~~wyhg~isr~~Ae~lL~~~--~~G~FLVR~s~~~~g~f~LSv~~-----~~~v~h~~I~~-~~~~~~~~~~~  279 (523)
                      ....++.++||||.|+|++||++|+..  .+|+||||.|+..+|.|+|||+.     ++.++||+|.+ .+|+|++....
T Consensus       141 ~~~~l~~~~wy~g~i~r~~ae~~L~~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~~g~~~i~~~~  220 (535)
T 2h8h_A          141 PSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT  220 (535)
T ss_dssp             ETTSGGGSTTBCCSCCHHHHHHHHTCTTCCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEBC-CCSCEEEETTE
T ss_pred             ccccccccceeccccCHHHHHHHhccCCCCCCeEEEEecCCCCCcEEEEEEeeccCCCCceEEEEEEEcCCCcEEeeccc
Confidence            345677889999999999999999863  67999999999889999999996     56899999987 57789998888


Q ss_pred             ccCCHHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCccccccc-----ccCccc-------hh
Q psy8552         280 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTF-----SEPFKF-------TS  347 (523)
Q Consensus       280 ~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~-------~~  347 (523)
                      .|.||.+||+||+.+..     +++..|..+|+......    .....+.|+++....+.     .|.||.       ..
T Consensus       221 ~F~SL~eLv~~y~~~~~-----~~~~~l~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~  291 (535)
T 2h8h_A          221 QFNSLQQLVAYYSKHAD-----GLCHRLTTVCPTSKPQT----QGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGT  291 (535)
T ss_dssp             EESSHHHHHHHHHHCCT-----TSSSCCCEECCCCCCCC----SSSSTTCSBCCGGGEEEEEEEEECSSEEEEEEEETTT
T ss_pred             cccChHHhheeeccccC-----ccccccccccccccccc----cccCccceecchhhhhhheecccCCCeEEEEEEECCC
Confidence            99999999999998774     77888888886532211    22334567776654443     566666       22


Q ss_pred             HHHHHHhhcccc--hhhhhhhhchhcccccc-cccccc
Q psy8552         348 VVELINYYKHES--LSQYNSTLDTRLLYPVS-RFSSDV  382 (523)
Q Consensus       348 ~~~avk~~~~~~--l~~~~~e~~ar~m~~l~-~~~~~l  382 (523)
                      ..||+|.++.+.  .+++++|  +++|+.++ ++++++
T Consensus       292 ~~vavK~~~~~~~~~~~~~~E--~~~l~~l~hpniv~~  327 (535)
T 2h8h_A          292 TRVAIKTLKPGTMSPEAFLQE--AQVMKKLRHEKLVQL  327 (535)
T ss_dssp             EEEEEEEECTTSSCHHHHHHH--HHHHHHCCCTTBCCE
T ss_pred             ceEEEEEeCCCCCCHHHHHHH--HHHHHhCCCCCEeeE
Confidence            348899887653  3458888  78999998 999988

>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}

Probab=99.72  E-value=4.1e-17  Score=147.86  Aligned_cols=160  Identities=16%  Similarity=0.218  Sum_probs=126.5

Q ss_pred             CCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEE-ECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHHHH
Q psy8552         213 RDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLR-KGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYY  291 (523)
Q Consensus       213 ~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~-~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~y  291 (523)
                      -.+|||+ +++..+||++|+.. +|+||||.|+. ++.++||++ .++.+.|++|...+..|.+++ ..|.+|.|||.+|
T Consensus        12 I~HP~F~-n~s~~qAe~~L~~~-~G~~liRPSsk-~~~ltit~Kv~d~~~~Hi~I~E~~k~l~ig~-~~fedLDElI~~y   87 (178)
T 2xp1_A           12 YKHPLFK-NFNVTESENYLRSS-TDDFLIRKGSR-HGYCVLVIKFASDVFVHMKIEEHSEHYTCSN-KHFEDIDEVISVY   87 (178)
T ss_dssp             GGSTTEE-CCCHHHHHHHHHHS-SCCEEEEECSS-TTEEEEEEEEETTEEEEEEEEECSSCEEETT-EEESSHHHHHHHT
T ss_pred             ccCCCcC-CCCHHHHHHHHhcC-CCCEEEeecCC-CCcEEEEEEECCCcEEEEEEEECCCEEEECC-cEECCHHHHHHHH
Confidence            4579999 89999999999985 49999999998 778999999 588899999987555676654 6999999999999


Q ss_pred             hhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCcccccccccCccchhHHHHHHhhcccchhhhhhhhchhc
Q psy8552         292 KHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRL  371 (523)
Q Consensus       292 ~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~avk~~~~~~l~~~~~e~~ar~  371 (523)
                      .. ++.               +                                                 .+++     
T Consensus        88 v~-pm~---------------~-------------------------------------------------~~~~-----   97 (178)
T 2xp1_A           88 VR-PIL---------------R-------------------------------------------------NLKS-----   97 (178)
T ss_dssp             HH-HHH---------------H-------------------------------------------------HHHH-----
T ss_pred             HH-HHH---------------H-------------------------------------------------HHHH-----
Confidence            87 320               0                                                 0111     


Q ss_pred             cccccccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccccCCHHHHHHHhcCCCCC--eEEeecCC-
Q psy8552         372 LYPVSRFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLVRMSRAQAEALLSGRPDG--TFLIRPST-  448 (523)
Q Consensus       372 m~~l~~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~~isr~~Ae~~L~~~~~G--~FLvR~s~-  448 (523)
                                                                  ....+||+. +++++|++|....++  .|.++.|. 
T Consensus        98 --------------------------------------------~~~h~kf~~-s~~~~e~~L~~~~p~~~~Y~f~~s~~  132 (178)
T 2xp1_A           98 --------------------------------------------IKAHAKYFN-SPEDAEKLLSSFDGSKVVYAFYFSRK  132 (178)
T ss_dssp             --------------------------------------------HHHSTTBCS-CTTTSHHHHHTCCSSSCEEEEEECSS
T ss_pred             --------------------------------------------HHhCCccCC-CHHHHHHHHHHhCCCCceEEEEecCC
Confidence                                                        223478887 788899999655333  48888887 


Q ss_pred             -CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhh
Q psy8552         449 -TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAA  495 (523)
Q Consensus       449 -~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~  495 (523)
                       ||.|+|++. .+.++|..|.-. .|+.+  .+..|+||.+||+||++
T Consensus       133 ~PG~f~l~~~-~~~~~~e~i~V~-~g~~~--~~~~f~sl~~L~~~fK~  176 (178)
T 2xp1_A          133 YPGKLTFAYN-NGSILEEYIGVS-DMLTY--NNSTFKDIDSFVAYRKR  176 (178)
T ss_dssp             STTEEEEEEE-SSSEEEEEEEES-SSEEE--TTEEESSHHHHHHHHHC
T ss_pred             CCCeEEEEEc-CCCCceeeEEEc-cCCEE--cCcCCcCHHHHHHHHhh
Confidence             999999997 777888777777 57777  34699999999999986

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.71  E-value=9.2e-18  Score=177.10  Aligned_cols=134  Identities=23%  Similarity=0.278  Sum_probs=112.9

Q ss_pred             ccccccccc-cccchhHHHhhhhhcccccccccCCCCC-----CCCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC-
Q psy8552         377 RFSSDVDAD-IHSNDVDKYINLKIAFTNLSGAVASTVD-----FESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST-  448 (523)
Q Consensus       377 ~~~~~l~k~-~~~~w~~~r~~~~~~~g~~p~~~~~~~~-----~~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~-  448 (523)
                      .+++.+++. .+.+||.++.. ++..|++|++|+++..     ..++.++||| .|+|++||.+|+...+|+||||.|+ 
T Consensus        33 gd~i~v~~~~~~~~ww~~~~~-~g~~G~~P~~yv~~~~~~~~~~~~~~~~wyhg~i~r~~ae~~L~~~~~G~FlvR~S~~  111 (450)
T 1k9a_A           33 GDVLTIVAVTKDPNWYKAKNK-VGREGIIPANYVQKREGVKAGTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTN  111 (450)
T ss_dssp             TCEEEEEEECSSTTEEEEECT-TCCEEEEEGGGEEECCCCCCCTTEESCTTBCTTCCHHHHHHHTCSCCTTEEEEEECSS
T ss_pred             CCEEEEeeccCCCCceEEEEC-CCceeeechhccccccccccccccccccccccCcCHHHhhhhhccCCCceEEEEecCC
Confidence            677777654 67789999876 6789999999965422     1468889999 9999999999987779999999998 


Q ss_pred             -CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCCC
Q psy8552         449 -TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA  517 (523)
Q Consensus       449 -~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~  517 (523)
                       +|.|+||+..++.++||+|....+++++. ....|.|+.+||+||+...     +|++++|..|+....
T Consensus       112 ~~g~~~Lsv~~~~~v~H~~I~~~~~~~~i~-~~~~F~sl~eLv~~y~~~~-----~~~~~~l~~~~~~~~  175 (450)
T 1k9a_A          112 YPGDYTLCVSCEGKVEHYRIMYHASKLSID-EEVYFENLMQLVEHYTTDA-----DGLCTRLIKPKVMEG  175 (450)
T ss_dssp             STTSEEEEEECSSSEEEEEEEEETTEEESS-SSSCBSSHHHHHHHHHHCC-----TTSSSCCCEECCCTT
T ss_pred             CCCceEEEEEeCCeeeEEEEEecCCceEec-cccccccHHHHHhhhcccc-----cchhhhccccccccC
Confidence             89999999999999999997766655554 4579999999999999885     889999999886643

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.71  E-value=2.6e-17  Score=180.22  Aligned_cols=98  Identities=27%  Similarity=0.326  Sum_probs=87.9

Q ss_pred             CCCCcccc-cCCHHHHHHHh--cCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHH
Q psy8552         416 SGEKTWLV-RMSRAQAEALL--SGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  490 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L--~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV  490 (523)
                      ....+||| .|+|.+||++|  .+.++|+||||+|+  +|.|+||++.+++|+||+|.+.++|.++......|+||.+||
T Consensus         5 ~~~~~W~~g~i~r~~ae~~L~~~~~~~G~fLvR~s~~~~g~~~ls~~~~~~~~h~~i~~~~~g~~~~~~~~~f~sl~~Lv   84 (613)
T 2ozo_A            5 AAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELC   84 (613)
T ss_dssp             TSSCTTBCBSCCHHHHHHHHHTTTCCTTEEEEEECTTBTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHH
T ss_pred             CCCCCCcCccCCHHHHHHHHhccCCCCCeEEEEecCCCCCCEEEEEEECCeEEEEEEEECCCCcEEECCCCCcCCHHHHH
Confidence            45678999 99999999999  45679999999998  899999999999999999998877766666668899999999


Q ss_pred             HHHhhCCccccCCccceeecccccCCCC
Q psy8552         491 LHYAANSLEEHNDDLKTTLAYPVFAPAS  518 (523)
Q Consensus       491 ~~y~~~~l~~~~~~l~~~L~~pv~~~~~  518 (523)
                      +||++++     +|+++.|++||+++.+
T Consensus        85 ~~y~~~~-----~~l~~~L~~p~~~~~~  107 (613)
T 2ozo_A           85 EFYSRDP-----DGLPCNLRKPCNRPSG  107 (613)
T ss_dssp             HHHTSCC-----TTSSSCCCSBCCCCTT
T ss_pred             HHHhhCC-----CCCCccCCccCCCCCC
Confidence            9999996     8999999999998743

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.70  E-value=1.5e-17  Score=175.70  Aligned_cols=162  Identities=24%  Similarity=0.369  Sum_probs=126.8

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEE-----CCeeEEEEEEE-eCCeEEeCCCCc
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRK-----GGTNKLIKIFH-RNGRYGFSEPFK  280 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~-----~~~v~h~~I~~-~~~~~~~~~~~~  280 (523)
                      ..+++.++||||.|+|++||++|..  ..+|+||||.|+..+|.|+||++.     ++.++||+|.. .+|.|++.....
T Consensus        64 ~~~le~~~W~~g~i~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~H~~I~~~~~g~~~i~~~~~  143 (454)
T 1qcf_A           64 VDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRST  143 (454)
T ss_dssp             TTCGGGSTTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECTTSCEESSSSSC
T ss_pred             ccccccccccccccchhhhhhhhhcCCCCCceEEEEECcCCCCeEEEEEEecccCCCCceEEEEEEEcCCCcEEEeCccc
Confidence            4567889999999999999999964  579999999999889999999997     77899999997 577899888789


Q ss_pred             cCCHHHHHHHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCccccccc-----ccCccc-------hhH
Q psy8552         281 FTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTF-----SEPFKF-------TSV  348 (523)
Q Consensus       281 F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~-------~~~  348 (523)
                      |.|+.+||+||+....     +++..+..|+.......     ....+.|+++....+.     .|.||.       ...
T Consensus       144 F~sl~eLv~~y~~~~~-----~l~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~  213 (454)
T 1qcf_A          144 FSTLQELVDHYKKGND-----GLCQKLSVPCMSSKPQK-----PWEKDAWEIPRESLKLEKKLGAGQFGEVWMATYNKHT  213 (454)
T ss_dssp             BSSHHHHHHHHTSSCT-----TSSSCCCSBCCCCCCCC-----CCCTTCSBCCGGGEEEEEEEECCSSEEEEEEEETTTE
T ss_pred             cCCHHHHHHHHHhccC-----CccccccccccccCccc-----cccccceeechHHeEEEEEcccCCceEEEEEEECCcc
Confidence            9999999999998764     67777877776432211     1223456666654443     556666       234


Q ss_pred             HHHHHhhccc--chhhhhhhhchhcccccc-cccccc
Q psy8552         349 VELINYYKHE--SLSQYNSTLDTRLLYPVS-RFSSDV  382 (523)
Q Consensus       349 ~~avk~~~~~--~l~~~~~e~~ar~m~~l~-~~~~~l  382 (523)
                      .||+|.++.+  ..+++++|  +++|+.++ |+++++
T Consensus       214 ~vavK~~~~~~~~~~~~~~E--~~~l~~l~h~~iv~l  248 (454)
T 1qcf_A          214 KVAVKTMKPGSMSVEAFLAE--ANVMKTLQHDKLVKL  248 (454)
T ss_dssp             EEEEEEECTTSBCHHHHHHH--HHHHTTCCCTTBCCE
T ss_pred             EEEEEEecCCCccHHHHHHH--HHHHhhCCCCCEeeE
Confidence            5789988754  44558888  79999998 999988

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.70  E-value=2.7e-17  Score=180.69  Aligned_cols=99  Identities=23%  Similarity=0.278  Sum_probs=90.0

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcC--CCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGAL  489 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~--~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~L  489 (523)
                      .++.++||| .|+|.+||++|..  +++|+||||+|+  +|.|+||++.+++|+||+|.+.++|.++......|+||.+|
T Consensus         9 ~l~~~~Wy~g~isr~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~v~h~~i~~~~~g~~~~~~~~~f~sl~~L   88 (635)
T 4fl3_A            9 SANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADL   88 (635)
T ss_dssp             CCTTCTTBCBSCCHHHHHHHHHHTTCCTTEEEEEECTTSSSCEEEEEEETTEEEEEEEEECTTSCEESTTCCCBSSHHHH
T ss_pred             hhhcCCccCCCCCHHHHHHHHhcCCCCCceEEEeecccCCCCEEEEEEeCCEEEeEEEEEcCCCCEEeCCCCccCCHHHH
Confidence            477889999 9999999999964  569999999998  99999999999999999999987777777667899999999


Q ss_pred             HHHHhhCCccccCCccceeecccccCCCC
Q psy8552         490 VLHYAANSLEEHNDDLKTTLAYPVFAPAS  518 (523)
Q Consensus       490 V~~y~~~~l~~~~~~l~~~L~~pv~~~~~  518 (523)
                      |+||++++     +|++++|++||.++.+
T Consensus        89 v~~y~~~~-----~~l~~~L~~p~~~~~~  112 (635)
T 4fl3_A           89 CHYHSQES-----DGLVCLLKKPFNRPQG  112 (635)
T ss_dssp             HHHHTTCC-----TTSSSCCCEECCCCTT
T ss_pred             HHHHhhCC-----CCCeeccCCcCCCccC
Confidence            99999996     9999999999998754

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.70  E-value=3.7e-17  Score=155.30  Aligned_cols=85  Identities=28%  Similarity=0.665  Sum_probs=76.4

Q ss_pred             CCCCCccccCCCHHHHHHHhc-CCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHHHHH
Q psy8552         212 LRDAEWYWGDISRDDVNDKLA-DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVELIN  289 (523)
Q Consensus       212 l~~~~wyhg~isr~~Ae~lL~-~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~LV~  289 (523)
                      +...+||||.|+|++||.+|. ..++|+||||.|++.+|.|+||++.++.++||+|.+ .+|.|++. ...|+|+.+||+
T Consensus        55 ~~~~~w~~g~isr~~ae~lL~~~~~~G~fLvR~S~~~~g~~~LSv~~~~~v~h~~I~~~~~g~~~~~-~~~f~sl~eLv~  133 (217)
T 1gri_A           55 MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLW-VVKFNSLNELVD  133 (217)
T ss_dssp             CCCCSSBCTTCCHHHHHHHHHTCSSTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECSSSCEESS-SCEESSHHHHHH
T ss_pred             cccchhhcccCCHHHHHHHHhccCCCceEEEEccCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEe-eeEcCCHHHHHH
Confidence            456799999999999999994 568999999999998999999999999999999997 56778776 688999999999


Q ss_pred             HHhhCCcc
Q psy8552         290 YYKHESLS  297 (523)
Q Consensus       290 ~y~~~~~~  297 (523)
                      ||+.+++.
T Consensus       134 ~~~~~~~~  141 (217)
T 1gri_A          134 YHRSTSVS  141 (217)
T ss_dssp             HHHHSCSS
T ss_pred             hhhccccc
Confidence            99998764

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=1.6e-17  Score=142.91  Aligned_cols=96  Identities=18%  Similarity=0.262  Sum_probs=80.0

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcC-C-CCceEEEEcCCCCCCcEEEEEEEC--CeeEEEEEEEeCCeEEeCCCCccCCH
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLAD-T-ADGTFLVRDTSTKNGEYTLTLRKG--GTNKLIKIFHRNGRYGFSEPFKFTSV  284 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~-~-~~G~FLVR~s~~~~g~f~LSv~~~--~~v~h~~I~~~~~~~~~~~~~~F~sl  284 (523)
                      ..+++.++|||         .+|.. . .+|+||||+|+ .+|.|+|||+.+  ++|+||+|...+++|++.+...|+||
T Consensus        24 ~~~l~~~~Wyh---------~Ll~~g~~~dG~FLVR~S~-~~g~y~LSv~~~~~~~vkH~rI~~~~~~~~i~~~~~F~sL   93 (126)
T 2cr4_A           24 TESCEVERLFK---------ATSPRGEPQDGLYCIRNSS-TKSGKVLVVWDETSNKVRNYRIFEKDSKFYLEGEVLFVSV   93 (126)
T ss_dssp             CCHHHHHHHHH---------HHSTTSCCCTTCEEEEECS-STTCEEEEEEETTTTEECCEECEEETTEEESSSSCEESSH
T ss_pred             ccccccCCCHH---------HHhhCCCCCCCeEEEEecC-CCCCEEEEEEeCCCCCEEEEEEEECCCeEEEcCCccCCCH
Confidence            34567789999         33332 3 36999999999 799999999999  99999999988889999888899999


Q ss_pred             HHHHHHHhhCCcccCCCCcceeeccccccCCCC
Q psy8552         285 VELINYYKHESLSQYNSTLDTRLLYPVSRFSSD  317 (523)
Q Consensus       285 ~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~~~~  317 (523)
                      .+||+||+.++++.   +..+.|+.|+.+...+
T Consensus        94 ~eLV~hY~~~~l~~---~~~~~L~~P~~~~~~~  123 (126)
T 2cr4_A           94 GSMVEHYHTHVLPS---HQSLLLRHPYGYTSGP  123 (126)
T ss_dssp             HHHHHHHTTSCCSS---SSSCCCCSBSSCCCCT
T ss_pred             HHHHHHHhhCCcCC---CCCEEeCCcCCCCCCC
Confidence            99999999999875   3567899999875443

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=99.70  E-value=2.1e-17  Score=174.34  Aligned_cols=106  Identities=21%  Similarity=0.301  Sum_probs=90.6

Q ss_pred             ccccchhHHHhhhhhcccccccccCCCCCCCCCCCccc-----c-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEE
Q psy8552         385 DIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWL-----V-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSI  456 (523)
Q Consensus       385 ~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~-----~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~  456 (523)
                      +.+.+||++++.+++++||+|++++++.+  ++.++||     | .|+|++||.+|.+ ++|+||||+|+  +|.|+||+
T Consensus        14 ~~~~~ww~~~~~~~~~~g~~P~~~v~~~~--~~~~~wy~~~w~hg~i~r~~ae~lL~~-~~G~FLvR~S~~~~g~~~Lsv   90 (463)
T 3cxl_A           14 LYFQGVWKSYLYQLQQEAPHPRRITCTCE--VENRPKYYGREFHGMISREAADQLLIV-AEGSYLIRESQRQPGTYTLAL   90 (463)
T ss_dssp             ----CCSCCHHHHHHHHSCCCEECCCCCC--CTTCCTTCCTTBCCSCCHHHHHHHHTT-STTEEEEEECSSSTTCEEEEE
T ss_pred             CCCCCEEEEEecCcCccCCCCcCccCCcc--ccCCCCccccccccCCCHHHHHHHHcC-CCCeEEEeccCCCCCCEEEEE
Confidence            45679999999999999999999988654  7788888     9 9999999999974 68999999998  89999999


Q ss_pred             EECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHH-----HHhhC
Q psy8552         457 VCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL-----HYAAN  496 (523)
Q Consensus       457 ~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~-----~y~~~  496 (523)
                      +.+++|+||+|.. + |.++.+. ..|+||.+||+     ||+..
T Consensus        91 ~~~~~v~H~~I~~-~-g~~~~~~-~~F~sl~~Lv~dGl~~~~~~~  132 (463)
T 3cxl_A           91 RFGSQTRNFRLYY-D-GKHFVGE-KRFESIHDLVTDGLITLYIET  132 (463)
T ss_dssp             ECSSSEEEEECEE-S-SSEESSS-CCBSCHHHHHHHHHHHHHHHH
T ss_pred             EECCEEEEEEEec-C-CeEEECC-CccCCHHHHHHHHHHhhhccC
Confidence            9999999999988 4 4455554 79999999999     99865

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.69  E-value=3.2e-17  Score=150.19  Aligned_cols=95  Identities=26%  Similarity=0.352  Sum_probs=81.2

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcC--CCCCeEEeecCC-CCceEEEEEECCe---eEEEEEEE---eCC----cEEEecCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPST-TGQYALSIVCSGA---PKHCLVYE---TER----GFGFAEPF  480 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~--~~~G~FLvR~s~-~~~~~Ls~~~~~~---v~h~~I~~---~~~----~~~~~~~~  480 (523)
                      .++.++||| .|+|++||++|+.  .++|+||||.|. +|.|+||++.+++   |+||+|..   ..+    +.++.+ .
T Consensus         8 ~l~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~~~~~~~-~   86 (174)
T 3qwx_X            8 PFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIA-N   86 (174)
T ss_dssp             GGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEECSSTTCEEEEEECCSSSSCEEEEEEEECCCCTTSSSCCCEEET-T
T ss_pred             ccccCCCccCCCCHHHHHHHHhccCCCCCeEEEEecCCCCCEEEEEEECCCCCceEEEEEEeccCCCCCcccceEEEC-C
Confidence            478889999 9999999999975  458999999999 9999999999999   99999998   433    344444 5


Q ss_pred             CCCCCHHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552         481 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       481 ~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      ..|+||.+||+||+.+++      +.+.|+.||+++
T Consensus        87 ~~F~sl~eLv~~y~~~~~------~~~~L~~P~~~p  116 (174)
T 3qwx_X           87 QSFPDIPALLNHFKMRVL------TEASLLAAYKKP  116 (174)
T ss_dssp             EEESSHHHHHHHTTSSCS------SSCCCCEECCCC
T ss_pred             eecCcHHHHhhhhhcCcc------cccccccccccc
Confidence            799999999999999862      578899999875

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.69  E-value=6.7e-18  Score=173.90  Aligned_cols=153  Identities=22%  Similarity=0.272  Sum_probs=99.2

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHH
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELI  288 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV  288 (523)
                      ..+++.++||||.|+|++||++|..  +|+||||+|++.+ .|+|||+.+++++||+|...++.|.+ ++..|+|+.+||
T Consensus         7 ~~~l~~~~wyhg~i~r~~a~~lL~~--~G~flvR~s~~~~-~~~lsv~~~~~~~h~~i~~~~~~~~~-~~~~F~sl~~LI   82 (377)
T 3cbl_A            7 QKPLHEQLWYHGAIPRAEVAELLVH--SGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSLDNLYRL-EGEGFPSIPLLI   82 (377)
T ss_dssp             GSCGGGCTTBCTTCCHHHHHHHCCS--TTEEEEEECC--C-CEEEEC-----CCEEEC----CCCCC-----CCSHHHHH
T ss_pred             ccccccCCccCCCCCHHHHHHHHhc--CCCEEEEEeCCCC-cEEEEEEECCCccchhhccccceEEe-cceeccchHHHH
Confidence            4567889999999999999999986  9999999999866 99999999999999999987665554 457899999999


Q ss_pred             HHHhhCCcccCCCCcceeeccccccCCCCcccccCCCCcCCCCCccccccc-----ccCccc--------hhHHHHHHhh
Q psy8552         289 NYYKHESLSQYNSTLDTRLLYPVSRFSSDVDADIHSNDVDKNPAPGVLRTF-----SEPFKF--------TSVVELINYY  355 (523)
Q Consensus       289 ~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~--------~~~~~avk~~  355 (523)
                      +||+....+.. ......+..|+++              +.|.+.....+.     .|.||.        +...||+|.+
T Consensus        83 ~~y~~~~~~l~-~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~  147 (377)
T 3cbl_A           83 DHLLSTQQPLT-KKSGVVLHRAVPK--------------DKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSC  147 (377)
T ss_dssp             HHHHHHTCCC------CCCCEECCC--------------CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEC
T ss_pred             HHHhhccCCcc-cccCcccccCccc--------------cccEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEc
Confidence            99998765321 1112223333322              345544433332     455555        3456788877


Q ss_pred             ccc----chhhhhhhhchhcccccc-cccccc
Q psy8552         356 KHE----SLSQYNSTLDTRLLYPVS-RFSSDV  382 (523)
Q Consensus       356 ~~~----~l~~~~~e~~ar~m~~l~-~~~~~l  382 (523)
                      +..    ..+++.+|  +++|+.++ |+++++
T Consensus       148 ~~~~~~~~~~~~~~E--~~~l~~l~hpniv~~  177 (377)
T 3cbl_A          148 RETLPPDLKAKFLQE--ARILKQYSHPNIVRL  177 (377)
T ss_dssp             CTTSCHHHHTTTTHH--HHHHTTCCCTTBCCE
T ss_pred             cccCCHHHHHHHHHH--HHHHHhCCCCCEEEE
Confidence            643    23347788  78999998 999998

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.67  E-value=1.8e-17  Score=165.27  Aligned_cols=96  Identities=32%  Similarity=0.454  Sum_probs=83.8

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEe-----------------CCcE
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYET-----------------ERGF  474 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~-----------------~~~~  474 (523)
                      .++.++||| .|+|++||.+|++..+|+||||.|+  +|.|+||++.+++|+||+|.+.                 .+++
T Consensus         7 ~~~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~~~   86 (304)
T 2eyz_A            7 SEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSR   86 (304)
T ss_dssp             CSSSSSSCCCCCCSSHHHHTTTTCCSSCEECCSCCSSSSCCEEEECSSSSCEEEECCCCSSCCSSCCCCCCCSSSSSCCC
T ss_pred             cccCCCCccCCCCHHHHHHHhcCCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEeeccccccccccccccccccCCCe
Confidence            478889999 9999999999998889999999998  8999999999999999999982                 4455


Q ss_pred             EEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCCC
Q psy8552         475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA  517 (523)
Q Consensus       475 ~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~~  517 (523)
                      ++.+ ...|+||.+||+||+++++     + +++|++||+++.
T Consensus        87 ~~~~-~~~F~sl~~LV~~y~~~~l-----~-~~~L~~P~~~~~  122 (304)
T 2eyz_A           87 LRIG-DQEFDSLPALLEFYKIHYL-----D-TTTLIEPVSRSR  122 (304)
T ss_dssp             CCBT-TBCCSCHHHHHTTTTTSCC-----S-SSSSCCBCCSCS
T ss_pred             EEeC-CcEECCHHHHHHHhhhCcc-----c-cceecccccccc
Confidence            5554 4699999999999999873     2 689999998764

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.66  E-value=1.5e-16  Score=151.08  Aligned_cols=116  Identities=24%  Similarity=0.265  Sum_probs=96.6

Q ss_pred             cccccccccc-ccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHh-cCCCCCeEEeecCC--CCc
Q psy8552         377 RFSSDVDADI-HSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPST--TGQ  451 (523)
Q Consensus       377 ~~~~~l~k~~-~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L-~~~~~G~FLvR~s~--~~~  451 (523)
                      .+++.+++.. +.+||.++.  .+..|++|++++..     ...+||| .|+|.+||.+| .+.++|+||||.|+  +|.
T Consensus        22 Gd~i~v~~~~~~~~W~~~~~--~g~~G~~P~~yv~~-----~~~~w~~g~isr~~ae~lL~~~~~~G~fLvR~S~~~~g~   94 (217)
T 1gri_A           22 GDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIEM-----KPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGD   94 (217)
T ss_dssp             TCEEEC------CCEEEEES--SSCEEEEEGGGEEC-----CCCSSBCTTCCHHHHHHHHHTCSSTTCEEEEECSSSTTC
T ss_pred             CCEEEEEeccCCCCeEeecc--CCccceECCccccc-----ccchhhcccCCHHHHHHHHhccCCCceEEEEccCCCCCC
Confidence            5777775444 678999874  56899999999753     3469999 99999999999 45679999999998  999


Q ss_pred             eEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHhhCCccc
Q psy8552         452 YALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEE  500 (523)
Q Consensus       452 ~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~  500 (523)
                      |+||++.++.++||+|.+..+|.++.. ...|+|+.+||+||+++++..
T Consensus        95 ~~LSv~~~~~v~h~~I~~~~~g~~~~~-~~~f~sl~eLv~~~~~~~~~~  142 (217)
T 1gri_A           95 FSLSVKFGNDVQHFKVLRDGAGKYFLW-VVKFNSLNELVDYHRSTSVSR  142 (217)
T ss_dssp             EEEEEEETTEEEEEEEEECSSSCEESS-SCEESSHHHHHHHHHHSCSSS
T ss_pred             EEEEEEECCEEEEEEEEEcCCCCEEEe-eeEcCCHHHHHHhhhcccccc
Confidence            999999999999999999888877766 479999999999999998654

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=99.47  E-value=8.1e-18  Score=167.78  Aligned_cols=95  Identities=27%  Similarity=0.372  Sum_probs=85.0

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  491 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~  491 (523)
                      .++.++||| .|+|++||.+|..+.+|+||||.|+  +|.|+||++.+++|+||+|.+..+|.++.+. ..|+||.+||+
T Consensus         8 ~~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~-~~F~sl~~Lv~   86 (303)
T 2lqn_A            8 SSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGD-QEFDHLPALLE   86 (303)
Confidence            478889999 9999999999998889999999997  8999999999999999999987666555554 79999999999


Q ss_pred             HHhhCCccccCCccceeecccccCC
Q psy8552         492 HYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       492 ~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      ||+++++      +++.|++||.++
T Consensus        87 ~y~~~~~------~~~~L~~P~~r~  105 (303)
T 2lqn_A           87 FYKIHYL------DTTTLIEPAPRY  105 (303)
Confidence            9999974      489999999884

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.65  E-value=2.1e-16  Score=158.09  Aligned_cols=105  Identities=23%  Similarity=0.310  Sum_probs=83.6

Q ss_pred             cccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhcC--CCCCeEEeecCC-CCceEEEEEECCe---eEEEEEEE-eC
Q psy8552         400 AFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPST-TGQYALSIVCSGA---PKHCLVYE-TE  471 (523)
Q Consensus       400 ~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~~--~~~G~FLvR~s~-~~~~~Ls~~~~~~---v~h~~I~~-~~  471 (523)
                      ..|++|+++.     .++.++||| .|+|++||++|+.  ..+|+||||.|. +|.|+||++.+++   |+||+|.. ..
T Consensus        27 ~~~~~~~~~~-----~l~~~~Wyhg~i~R~~Ae~lL~~~~~~~G~FLVR~S~~~g~y~LSv~~~~~~~~v~H~~I~~~~~  101 (308)
T 3qwy_A           27 GQQMTTNGFD-----PFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIERGEP  101 (308)
T ss_dssp             -------CCC-----GGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEECSSTTCEEEEEECCSSSSCEEEEEEEECCC
T ss_pred             CccccccccC-----cccccccccCCCCHHHHHHHHhccCCCCceEEEEccCCCCCEEEEEEeCCCCCceEEEEEeeccC
Confidence            4567776663     478889999 9999999999975  459999999999 9999999999999   99999988 54


Q ss_pred             C------cEEEecCCCCCCCHHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552         472 R------GFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       472 ~------~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      +      +.++... ..|+|+.+||+||+.+++      ..+.|.+||.++
T Consensus       102 ~~~g~~~g~~~~~~-~~F~Sl~eLv~~y~~~~~------~~~~L~~P~~~p  145 (308)
T 3qwy_A          102 KEDGTAAAGVKIAN-QSFPDIPALLNHFKMRVL------TEASLLAAYKKP  145 (308)
T ss_dssp             CTTTTCCCCEEETT-EEESSHHHHHHHHHHSCS------SSCCCCEECCCC
T ss_pred             CCcCcccceEEEeC-eeeCCHHHHHHHHhhccc------ccchhccccccc
Confidence            3      5555554 799999999999999863      477899999775

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}

Probab=99.64  E-value=2.7e-16  Score=170.90  Aligned_cols=100  Identities=24%  Similarity=0.415  Sum_probs=90.2

Q ss_pred             CCCCccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEECC---------eeEEEEEEEeCCeEEeCCCCccC
Q psy8552         213 RDAEWYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKGG---------TNKLIKIFHRNGRYGFSEPFKFT  282 (523)
Q Consensus       213 ~~~~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~~~---------~v~h~~I~~~~~~~~~~~~~~F~  282 (523)
                      ..++||||.|+|++||++|.. ..+|+||||+|++.+|.|+|||++++         +++||+|...+|+|++.+...|+
T Consensus       106 ~~~~Wy~g~~~r~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~~~~~v~H~~I~~~~~~~~~~~~~~F~  185 (595)
T 3ps5_A          106 TSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFD  185 (595)
T ss_dssp             CCSTTEEESCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEEEEESSSTTSCEEEEEEEEBCGGGCBBSSSSCCBS
T ss_pred             cccccccccCCHHHHHHHHhccCCCceEEEEecCCCCCcEEEEEEECCccccccCCCceEEEEEEEeCCEEEEcCCcCCC
Confidence            467899999999999999965 46899999999998999999999888         89999999888899998888999


Q ss_pred             CHHHHHHHHhhCCcccCCCCcceeecccccc
Q psy8552         283 SVVELINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       283 sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      ||.+||+||+.+++.. ..++.+.|++|+..
T Consensus       186 sl~~LV~~y~~~~l~~-~~g~~~~L~~p~~~  215 (595)
T 3ps5_A          186 SLTDLVEHFKKTGIEE-ASGAFVYLRQPYYA  215 (595)
T ss_dssp             SHHHHHHHHHHSCBCC-TTSCCBCCCEECCC
T ss_pred             CHHHHHHHHhcCCccc-cCCcEEEeeccccc
Confidence            9999999999988765 36889999999875

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1

Probab=99.63  E-value=1.1e-15  Score=164.11  Aligned_cols=101  Identities=22%  Similarity=0.484  Sum_probs=91.2

Q ss_pred             CCCCccccCCCHHHHHHHhcCC-CCceEEEEcCCCCCCcEEEEEEECC----------eeEEEEEEEeCCeEEeCCCCcc
Q psy8552         213 RDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGG----------TNKLIKIFHRNGRYGFSEPFKF  281 (523)
Q Consensus       213 ~~~~wyhg~isr~~Ae~lL~~~-~~G~FLVR~s~~~~g~f~LSv~~~~----------~v~h~~I~~~~~~~~~~~~~~F  281 (523)
                      +.++||||.|+|++||++|.+. ++|+||||+|++.+|.|+||++.++          .++||+|.+.+|+|++.+...|
T Consensus       108 ~~~~w~~g~~~r~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~~~~~~v~H~~I~~~~g~~~l~~~~~F  187 (525)
T 2shp_A          108 TSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGERF  187 (525)
T ss_dssp             TTCTTBCCSCCHHHHHHHHHHTCCTTEEEEEECSSSTTCEEEEEEECC-----CCCCCEEEEEEEEEETTEEESSSSCCB
T ss_pred             ccceeecccCCHHHHHHHHhccCCCceEEEEecCCCCCCEEEEEEECCccccccccccceEEEEEEecCCeEEECCCcee
Confidence            4579999999999999999864 7999999999998999999999987          8999999998999999888899


Q ss_pred             CCHHHHHHHHhhCCcccCCCCcceeeccccccC
Q psy8552         282 TSVVELINYYKHESLSQYNSTLDTRLLYPVSRF  314 (523)
Q Consensus       282 ~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~  314 (523)
                      .||.+||+||+.+++.. ..++.+.|++||.+.
T Consensus       188 ~sL~eLV~~y~~~~l~~-~~g~~~~L~~P~~~t  219 (525)
T 2shp_A          188 DSLTDLVEHYKKNPMVE-TLGTVLQLKQPLNTT  219 (525)
T ss_dssp             SSHHHHHHHHHHSCCBC-TTSCBCCCCEECCCS
T ss_pred             CcHHHHHHhhhccCccc-cCCeEEEeecccccc
Confidence            99999999999998754 357889999998874

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*

Probab=99.59  E-value=1.7e-15  Score=162.80  Aligned_cols=99  Identities=26%  Similarity=0.417  Sum_probs=84.4

Q ss_pred             Ccccc-cCCHHHHHHHhcCC-CCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHh
Q psy8552         419 KTWLV-RMSRAQAEALLSGR-PDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYA  494 (523)
Q Consensus       419 ~~W~~-~isr~~Ae~~L~~~-~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~  494 (523)
                      ++||| .|+|.+||++|... ++|+||||.|+  +|.|+||++.++.++||+|...++.|.+.+ ...|+||.+||+||+
T Consensus         2 ~~Wyhg~i~r~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~~~~~~-~~~F~sl~~Lv~~y~   80 (532)
T 2b3o_A            2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYG-GEKFATLTELVEYYT   80 (532)
T ss_dssp             CTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSSSEEEEEEEETTEEEEEEEECSSSCEEETT-SCEESCHHHHHHHHH
T ss_pred             CCceeCCCCHHHHHHHHHhcCCCCCEEEecCCCCCCceEEEEEECCEEEEEEEEecCCEEEECC-CcccCCHHHHHHHHH
Confidence            58999 99999999999755 69999999998  899999999999999999997554444534 478999999999999


Q ss_pred             hCCcccc-CCccceeecccccCCCC
Q psy8552         495 ANSLEEH-NDDLKTTLAYPVFAPAS  518 (523)
Q Consensus       495 ~~~l~~~-~~~l~~~L~~pv~~~~~  518 (523)
                      ++++... .+|+.+.|++||+.+.|
T Consensus        81 ~~~~~l~~~~g~~~~L~~P~~~~~p  105 (532)
T 2b3o_A           81 QQQGVLQDRDGTIIHLKYPLNCSDP  105 (532)
T ss_dssp             TTCSCBCCSSSCCBCCCEECCCCCG
T ss_pred             hcccccccccCchhhcccccccccc
Confidence            9874322 47999999999988765

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.25  E-value=3.9e-12  Score=130.68  Aligned_cols=79  Identities=28%  Similarity=0.524  Sum_probs=58.4

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  492 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~  492 (523)
                      .++.++||| .|+|++||.+|.  .+|+||||.|+ .+.|+||++.+++++||+|...++.+.+ . +..|+|+++||+|
T Consensus         9 ~l~~~~wyhg~i~r~~a~~lL~--~~G~flvR~s~~~~~~~lsv~~~~~~~h~~i~~~~~~~~~-~-~~~F~sl~~LI~~   84 (377)
T 3cbl_A            9 PLHEQLWYHGAIPRAEVAELLV--HSGDFLVRESQGKQEYVLSVLWDGLPRHFIIQSLDNLYRL-E-GEGFPSIPLLIDH   84 (377)
T ss_dssp             CGGGCTTBCTTCCHHHHHHHCC--STTEEEEEECC--CCEEEEC-----CCEEEC----CCCCC------CCSHHHHHHH
T ss_pred             ccccCCccCCCCCHHHHHHHHh--cCCCEEEEEeCCCCcEEEEEEECCCccchhhccccceEEe-c-ceeccchHHHHHH
Confidence            578889999 999999999998  78999999999 4499999999999999999987653333 3 3689999999999


Q ss_pred             HhhCC
Q psy8552         493 YAANS  497 (523)
Q Consensus       493 y~~~~  497 (523)
                      |+.++
T Consensus        85 y~~~~   89 (377)
T 3cbl_A           85 LLSTQ   89 (377)
T ss_dssp             HHHHT
T ss_pred             Hhhcc
Confidence            99865

>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}

Probab=98.94  E-value=1.4e-09  Score=98.43  Aligned_cols=76  Identities=17%  Similarity=0.260  Sum_probs=65.3

Q ss_pred             CCCcccccCCHHHHHHHhcCCCCCeEEeecCC-CCceEEEEEE-CCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHHh
Q psy8552         417 GEKTWLVRMSRAQAEALLSGRPDGTFLIRPST-TGQYALSIVC-SGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYA  494 (523)
Q Consensus       417 ~~~~W~~~isr~~Ae~~L~~~~~G~FLvR~s~-~~~~~Ls~~~-~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y~  494 (523)
                      -..|||++++..|||++|+.. +|+||||+|+ ++.++||++. ++.+.|++|...+..+.+ ++ ..|.+|+|||.+|.
T Consensus        12 I~HP~F~n~s~~qAe~~L~~~-~G~~liRPSsk~~~ltit~Kv~d~~~~Hi~I~E~~k~l~i-g~-~~fedLDElI~~yv   88 (178)
T 2xp1_A           12 YKHPLFKNFNVTESENYLRSS-TDDFLIRKGSRHGYCVLVIKFASDVFVHMKIEEHSEHYTC-SN-KHFEDIDEVISVYV   88 (178)
T ss_dssp             GGSTTEECCCHHHHHHHHHHS-SCCEEEEECSSTTEEEEEEEEETTEEEEEEEEECSSCEEE-TT-EEESSHHHHHHHTH
T ss_pred             ccCCCcCCCCHHHHHHHHhcC-CCCEEEeecCCCCcEEEEEEECCCcEEEEEEEECCCEEEE-CC-cEECCHHHHHHHHH
Confidence            346999999999999999875 5999999999 8889999995 889999999877654544 43 48999999999998


Q ss_pred             h
Q psy8552         495 A  495 (523)
Q Consensus       495 ~  495 (523)
                      +
T Consensus        89 ~   89 (178)
T 2xp1_A           89 R   89 (178)
T ss_dssp             H
T ss_pred             H
Confidence            8

>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A*

Probab=98.08  E-value=3e-06  Score=86.80  Aligned_cols=72  Identities=17%  Similarity=0.272  Sum_probs=59.5

Q ss_pred             CCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEEC---CeeEEEEEEEeCCeEEeCCCCccCCHHHHHHHH
Q psy8552         215 AEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKG---GTNKLIKIFHRNGRYGFSEPFKFTSVVELINYY  291 (523)
Q Consensus       215 ~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~---~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~y  291 (523)
                      ..|+||.|+|++|+++|.+.+.|+||||-|++..|.|++|++..   ++++|+.|.-....      ..-.|+.|.|.-|
T Consensus       351 dg~I~GFIsk~ea~~lL~~~~~GTFLLRFSeS~~GgitIsyV~~d~~~~~kh~~v~p~t~~------ls~~SL~D~I~d~  424 (473)
T 1uur_A          351 EGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDTA------AAKKTFPDFLSEH  424 (473)
T ss_dssp             HTSSCBSCCHHHHHHTTSSCCTTCEEEEECSSSTTCEEEEEECSSSSCCEEEEECCGGGSB------TTTBCHHHHHTTC
T ss_pred             cCcEEEEecHHHHHHHhhCCCCCeEEEEeccCCCceEEEEEEeecCCCceeEEEecCCccc------cccCCHHHHHhcc
Confidence            48999999999999999999999999999999999999999964   68889988643222      2347888888754


Q ss_pred             h
Q psy8552         292 K  292 (523)
Q Consensus       292 ~  292 (523)
                      .
T Consensus       425 ~  425 (473)
T 1uur_A          425 S  425 (473)
T ss_dssp             T
T ss_pred             H
Confidence            3

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=97.82  E-value=3.3e-07  Score=76.43  Aligned_cols=58  Identities=12%  Similarity=0.046  Sum_probs=49.9

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhc
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLS  435 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~  435 (523)
                      .+++.++...+.+||.++....+..|++|++++.... .+..++||| .|+|.+||++|.
T Consensus        49 Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~-~~~~~~w~~g~isR~~Ae~lL~  107 (109)
T 2yt6_A           49 GERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPAD-SIQAEEWYFGKMGRKDAESGPS  107 (109)
T ss_dssp             TCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESS-SCTTTHHHHHCCCSCCCCCCSC
T ss_pred             CCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECC-cccccccccCCcCHHHHHHHhh
Confidence            5777776666789999987667789999999988766 688889999 999999999986

>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}

Probab=97.77  E-value=3.5e-06  Score=96.58  Aligned_cols=79  Identities=16%  Similarity=0.313  Sum_probs=0.0

Q ss_pred             CCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEE-ECCeeEEEEEEE--eCCe------EEeCCCCccCC
Q psy8552         213 RDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLR-KGGTNKLIKIFH--RNGR------YGFSEPFKFTS  283 (523)
Q Consensus       213 ~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~-~~~~v~h~~I~~--~~~~------~~~~~~~~F~s  283 (523)
                      =.+|-|| +++-.+|++.|.+++.|+++||.|+..+...+++++ .+|-..|+-|..  .++.      +.|+ +..|.+
T Consensus      1022 I~HP~F~-n~~~~qAe~~L~~~~~Gd~vIRPSSkG~dhLtvTwKv~d~vyqHidV~E~~K~n~~slG~~L~I~-~~~y~D 1099 (1219)
T 3psi_A         1022 INHPYYF-PFNGRQAEDYLRSKERGEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELEKENPLALGKVLIVD-NQKYND 1099 (1219)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCCC-CCCHHHHHHHHhcCCCCCEEEeecCCCCCceEEEEEEcCCcEEEEEEEecCCccccccCceEEEC-CceECC
Confidence            3467888 799999999999999999999999986666788888 556677888874  2222      3333 469999


Q ss_pred             HHHHHHHHhh
Q psy8552         284 VVELINYYKH  293 (523)
Q Consensus       284 l~~LV~~y~~  293 (523)
                      |.|||.-|..
T Consensus      1100 LDEli~r~V~ 1109 (1219)
T 3psi_A         1100 LDQIIVEYLQ 1109 (1219)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHH
Confidence            9999987755

>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A*

Probab=97.35  E-value=0.00019  Score=73.55  Aligned_cols=73  Identities=21%  Similarity=0.305  Sum_probs=60.0

Q ss_pred             CCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEEC---CeeEEEEEEEeCCcEEEecCCCCCCCHHHH
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCS---GAPKHCLVYETERGFGFAEPFNIYPSLGAL  489 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~---~~v~h~~I~~~~~~~~~~~~~~~F~sl~~L  489 (523)
                      +....|+| .|+|++|+++|.+++.|+||+|.|+  .|.|+++++..   ++++||.|......       ..-.||.|+
T Consensus       348 lW~dg~I~GFIsk~ea~~lL~~~~~GTFLLRFSeS~~GgitIsyV~~d~~~~~kh~~v~p~t~~-------ls~~SL~D~  420 (473)
T 1uur_A          348 LWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDTA-------AAKKTFPDF  420 (473)
T ss_dssp             HHHHTSSCBSCCHHHHHHTTSSCCTTCEEEEECSSSTTCEEEEEECSSSSCCEEEEECCGGGSB-------TTTBCHHHH
T ss_pred             HHhcCcEEEEecHHHHHHHhhCCCCCeEEEEeccCCCceEEEEEEeecCCCceeEEEecCCccc-------cccCCHHHH
Confidence            34458999 9999999999999999999999998  99999999974   68999988865432       134689999


Q ss_pred             HHHHhh
Q psy8552         490 VLHYAA  495 (523)
Q Consensus       490 V~~y~~  495 (523)
                      |..|..
T Consensus       421 I~d~~q  426 (473)
T 1uur_A          421 LSEHSQ  426 (473)
T ss_dssp             HTTCTT
T ss_pred             HhccHH
Confidence            987644

>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}

Probab=97.02  E-value=0.00045  Score=73.05  Aligned_cols=71  Identities=20%  Similarity=0.332  Sum_probs=51.8

Q ss_pred             CccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCe-eEEEEEEEeCCeEEeCCCCccCCHHHHHHHH
Q psy8552         216 EWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGT-NKLIKIFHRNGRYGFSEPFKFTSVVELINYY  291 (523)
Q Consensus       216 ~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~-v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~y  291 (523)
                      .|.+|.|+|.+|+++|.+.+.|+||+|-|++..|.|++|+...+. ..++.|.-    |.. ..-.-.||.|.|..|
T Consensus       465 G~I~Gfisk~~a~~~L~~~~~GtFLlRFSds~~G~~tisyv~~~~~~~v~~v~P----~t~-kdl~~~sL~d~I~d~  536 (585)
T 1y1u_A          465 GAILGFVNKQQAHDLLINKPDGTFLLRFSDSEIGGITIAWKFDSPDRNLWNLKP----FTT-RDFSIRSLADRLGDL  536 (585)
T ss_dssp             TCCCBSCCHHHHHHHHHTSCTTCEEEEEETTSTTEEEEEECCSSCCSSCSEEEE----ECH-HHHHHSCHHHHHHHC
T ss_pred             cceEEeccHHHHHHHHhCCCCCceEEEeccCCcCcEEEEEEecCCCceeEeecC----Cch-hhcccCCHHHHHhcc
Confidence            456789999999999999999999999999999999999986432 22222332    110 111247889988876

>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}

Probab=96.91  E-value=0.0011  Score=71.26  Aligned_cols=73  Identities=25%  Similarity=0.349  Sum_probs=53.1

Q ss_pred             CccccCCCHHHHHHHhcCCCCceEEEEcCCC-CCCcEEEEEEEC---C-eeEEEEEEEeCCeEEeCCCCccCCHHHHHHH
Q psy8552         216 EWYWGDISRDDVNDKLADTADGTFLVRDTST-KNGEYTLTLRKG---G-TNKLIKIFHRNGRYGFSEPFKFTSVVELINY  290 (523)
Q Consensus       216 ~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~-~~g~f~LSv~~~---~-~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~  290 (523)
                      .|.+|.|+|++|+++|.+.++|+||+|-|++ ..|.+++++...   + .+.++.|.-    |... .-.-.||.|.|..
T Consensus       576 G~I~GFIsK~~a~~lL~~~~~GTFLLRFSdS~~~Ggitia~V~~~~~~~~~~v~~v~P----~t~k-dl~~~sl~d~i~d  650 (683)
T 1yvl_A          576 GCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEP----YTKK-ELSAVTFPDIIRN  650 (683)
T ss_dssp             TCCCBCCCHHHHHHHHSSSCSSCEEEEECSSCSSCEEEEEEEECCC---CCEEEEBCC----EEHH-HHTTSCHHHHHHH
T ss_pred             CceEEeecHHHHHHHHhCCCCCeEEEecCCCCCCCceEEEEEeccCCCccceEEecCC----CchH-hhhhCCHHHHhhc
Confidence            3457789999999999999999999999999 899999999863   2 343443332    2111 1123688999988


Q ss_pred             Hhh
Q psy8552         291 YKH  293 (523)
Q Consensus       291 y~~  293 (523)
                      |+.
T Consensus       651 ~~~  653 (683)
T 1yvl_A          651 YKV  653 (683)
T ss_dssp             CCE
T ss_pred             hhh
Confidence            854

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=96.87  E-value=8e-05  Score=59.46  Aligned_cols=56  Identities=16%  Similarity=-0.016  Sum_probs=28.7

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHHHHHHhc
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQAEALLS  435 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~Ae~~L~  435 (523)
                      .+++.++.. +.+||.++....+..|++|++++.... .....+ || .|+|.+|+.+|.
T Consensus        25 Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~-~~~~~~-~~~~~~r~~ae~lL~   81 (90)
T 3reb_B           25 GDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVD-SGGGTS-GGGRHRRRQAERMSQ   81 (90)
T ss_dssp             TCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEEC-C---------------------
T ss_pred             CCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECC-CCCCcc-cccCcCHHHHHHHHh
Confidence            567777554 357999998777899999999987655 344444 99 999999999995

>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1

Probab=96.43  E-value=0.0017  Score=68.13  Aligned_cols=72  Identities=25%  Similarity=0.358  Sum_probs=51.1

Q ss_pred             ccccCCCHHHHHHHhcCCCCceEEEEcCCC-CCCcEEEEEEEC---C-eeEEEEEEEeCCeEEeCCCCccCCHHHHHHHH
Q psy8552         217 WYWGDISRDDVNDKLADTADGTFLVRDTST-KNGEYTLTLRKG---G-TNKLIKIFHRNGRYGFSEPFKFTSVVELINYY  291 (523)
Q Consensus       217 wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~-~~g~f~LSv~~~---~-~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~y  291 (523)
                      |-+|.|++++|+++|.+.+.|+||+|-|++ ..|.+++++...   + .+.++.|.-    |... .-.-.||.|.|..|
T Consensus       442 ~I~GFIsK~~a~~lL~~~~~GTFLLRFSdS~~~GgITia~V~~~~~~~~~~v~~v~P----~T~k-dl~~~sL~d~i~d~  516 (575)
T 1bf5_A          442 CIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEP----YTKK-ELSAVTFPDIIRNY  516 (575)
T ss_dssp             CCCCCCCHHHHHHHTTTCCSCCCCEEECSSCSSCCEEEEECCCCSSSSCCCCEECCC----BCHH-HHHSSCHHHHHHTC
T ss_pred             ceEEeecHHHHHHHHhCCCCCeEEEecCCCCCCCcEEEEEEecCCCCccceeEecCC----Cchh-hhhhCCHHHHhhcc
Confidence            446788999999999999999999999998 899999998853   2 333333322    1110 01225788988777


Q ss_pred             hh
Q psy8552         292 KH  293 (523)
Q Consensus       292 ~~  293 (523)
                      +.
T Consensus       517 ~~  518 (575)
T 1bf5_A          517 KV  518 (575)
T ss_dssp             CC
T ss_pred             hh
Confidence            54

>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A

Probab=96.34  E-value=0.00036  Score=73.56  Aligned_cols=72  Identities=28%  Similarity=0.395  Sum_probs=52.9

Q ss_pred             CccccCCCHHHHHHHhcCCCCceEEEEcCCC-CCCcEEEEEEEC---CeeEEEEEEEeCCeEEeCCCCccCCHHHHHHHH
Q psy8552         216 EWYWGDISRDDVNDKLADTADGTFLVRDTST-KNGEYTLTLRKG---GTNKLIKIFHRNGRYGFSEPFKFTSVVELINYY  291 (523)
Q Consensus       216 ~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~-~~g~f~LSv~~~---~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~y  291 (523)
                      .|-+|.|+|++|+++|.+.+.|+||+|-|++ ..|.+++|++..   |.+.|+.|.-    |.. +.-...||.|+|..|
T Consensus       457 G~I~Gfisk~~a~~lL~~~~~GTFLlRFSes~~~Ggitis~v~~~~~g~~~~~~v~P----~t~-~~l~~~sLad~I~d~  531 (596)
T 1bg1_A          457 GYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVEP----YTK-QQLNNMSFAEIIMGY  531 (596)
T ss_dssp             SCCCBCCCTTGGGTTTTTSCTTCBCEEECSSCSSCCEEECCCCSSSCSSCCCCCCCC----BCG-GGGTSSCHHHHTTSC
T ss_pred             CCeEEEecHHHHHHHHhCCCCCeeEEeecCCCCCCcEEEEEEecCCCCceeEEecCC----Cch-hhhccCCHHHHHHhh
Confidence            4557889999999999999999999999999 899999998853   3454555433    111 111235889998655


Q ss_pred             h
Q psy8552         292 K  292 (523)
Q Consensus       292 ~  292 (523)
                      +
T Consensus       532 ~  532 (596)
T 1bg1_A          532 K  532 (596)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*

Probab=95.84  E-value=0.013  Score=56.31  Aligned_cols=51  Identities=18%  Similarity=0.324  Sum_probs=43.8

Q ss_pred             CCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEEC-CeeEE
Q psy8552         213 RDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKG-GTNKL  263 (523)
Q Consensus       213 ~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~-~~v~h  263 (523)
                      -.+|=|.|.||-.||.++|++  ...|+|++|-|.+..|.|++++... +.+.|
T Consensus       241 ~~hpGy~aFlTydEv~~~L~~~~~kpGsYIfR~ScTrlGqwAIgyV~~~~~I~q  294 (329)
T 3bux_B          241 VTHPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQ  294 (329)
T ss_dssp             TSCTTBCTTCCHHHHHHHHGGGTTSTTEEEEEECSSSTTSEEEEEECTTSCEEE
T ss_pred             hcCcchhheeeHHHHHHHHHHhcCCCCcEEEEeccCccCceEEEEECCCCceee
Confidence            446779999999999999998  7899999999999999999999854 34433

>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}

Probab=95.54  E-value=0.017  Score=55.12  Aligned_cols=51  Identities=18%  Similarity=0.380  Sum_probs=43.9

Q ss_pred             CCCCccccCCCHHHHHHHhc--CCCCceEEEEcCCCCCCcEEEEEEE-CCeeEE
Q psy8552         213 RDAEWYWGDISRDDVNDKLA--DTADGTFLVRDTSTKNGEYTLTLRK-GGTNKL  263 (523)
Q Consensus       213 ~~~~wyhg~isr~~Ae~lL~--~~~~G~FLVR~s~~~~g~f~LSv~~-~~~v~h  263 (523)
                      -++|=|.|.||-.||.+.|+  ....|+|++|-|.+..|.|+|++.. ++.+.|
T Consensus       226 v~hpGy~aFlTydEV~~~L~~~~~KpGsYIfR~ScTrlGqwAIgYV~s~g~I~q  279 (323)
T 3op0_A          226 VNHPGYMAFLTYDEVQERLQACRDKPGSYIFRPSCTRLGQWAIGYVSSDGSILQ  279 (323)
T ss_dssp             TTCTTBCTTCCHHHHHHHTTGGGGSTTEEEEEECSSSTTCEEEEEECTTSCEEE
T ss_pred             hcCcceeeeeeHHHHHHHHHHhccCCCcEEEEeccCccCceEEEEEcCCCceee
Confidence            35788999999999999999  5689999999999999999999985 444444

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=95.39  E-value=0.0018  Score=50.73  Aligned_cols=52  Identities=6%  Similarity=-0.173  Sum_probs=33.7

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc-cCCHHH
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV-RMSRAQ  429 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~-~isr~~  429 (523)
                      .+++.++...+.+||.++....+..|++|++++.... ....++|++ .+.+.+
T Consensus        28 Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~-~~~~e~~~~~~~~~~~   80 (84)
T 4ag1_C           28 GEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD-SIQGEQKLISEEDLHH   80 (84)
T ss_dssp             TCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETT-TCC-------------
T ss_pred             CCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECC-CcccccCCCcccChhh
Confidence            6777777666789999998777899999999988766 688899998 776643

>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}

Probab=94.97  E-value=0.015  Score=61.47  Aligned_cols=70  Identities=21%  Similarity=0.201  Sum_probs=50.4

Q ss_pred             CCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECC-eeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHH
Q psy8552         418 EKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSG-APKHCLVYETERGFGFAEPFNIYPSLGALVLHY  493 (523)
Q Consensus       418 ~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~-~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y  493 (523)
                      ...|.+ .|+|.+|+.+|.+++.|+||+|.|+  .|.|+++++.++ ..+++.|.....      ..-.-.||.|+|..|
T Consensus       463 ~dG~I~Gfisk~~a~~~L~~~~~GtFLlRFSds~~G~~tisyv~~~~~~~v~~v~P~t~------kdl~~~sL~d~I~d~  536 (585)
T 1y1u_A          463 NDGAILGFVNKQQAHDLLINKPDGTFLLRFSDSEIGGITIAWKFDSPDRNLWNLKPFTT------RDFSIRSLADRLGDL  536 (585)
T ss_dssp             HHTCCCBSCCHHHHHHHHHTSCTTCEEEEEETTSTTEEEEEECCSSCCSSCSEEEEECH------HHHHHSCHHHHHHHC
T ss_pred             cccceEEeccHHHHHHHHhCCCCCceEEEeccCCcCcEEEEEEecCCCceeEeecCCch------hhcccCCHHHHHhcc
Confidence            346778 8999999999999999999999998  999999998742 222333443221      101235788888876

>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}

Probab=94.21  E-value=0.052  Score=58.39  Aligned_cols=71  Identities=23%  Similarity=0.313  Sum_probs=51.5

Q ss_pred             Ccccc-cCCHHHHHHHhcCCCCCeEEeecCC---CCceEEEEEEC---C-eeEEEEEEEeCCcEEEecCCCCCCCHHHHH
Q psy8552         419 KTWLV-RMSRAQAEALLSGRPDGTFLIRPST---TGQYALSIVCS---G-APKHCLVYETERGFGFAEPFNIYPSLGALV  490 (523)
Q Consensus       419 ~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~---~~~~~Ls~~~~---~-~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV  490 (523)
                      ..|.. .|+|++|+++|+++++|+||+|.|+   .|.++++++..   + .+.++.|..-.      ...-.=-||.|.|
T Consensus       575 dG~I~GFIsK~~a~~lL~~~~~GTFLLRFSdS~~~Ggitia~V~~~~~~~~~~v~~v~P~t------~kdl~~~sl~d~i  648 (683)
T 1yvl_A          575 DGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEPYT------KKELSAVTFPDII  648 (683)
T ss_dssp             TTCCCBCCCHHHHHHHHSSSCSSCEEEEECSSCSSCEEEEEEEECCC---CCEEEEBCCEE------HHHHTTSCHHHHH
T ss_pred             CCceEEeecHHHHHHHHhCCCCCeEEEecCCCCCCCceEEEEEeccCCCccceEEecCCCc------hHhhhhCCHHHHh
Confidence            35667 8999999999999999999999886   78899998873   3 55555554321      1101235889999


Q ss_pred             HHHhh
Q psy8552         491 LHYAA  495 (523)
Q Consensus       491 ~~y~~  495 (523)
                      ..|..
T Consensus       649 ~d~~~  653 (683)
T 1yvl_A          649 RNYKV  653 (683)
T ss_dssp             HHCCE
T ss_pred             hchhh
Confidence            98853

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=93.54  E-value=0.0069  Score=46.76  Aligned_cols=44  Identities=7%  Similarity=-0.188  Sum_probs=30.1

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcc
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTW  421 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W  421 (523)
                      .+++.+++..+.+||.++...++..|++|++++...+ ..+.++|
T Consensus        27 Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~-~~~~~~~   70 (79)
T 3cqt_A           27 GEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVD-RLDYKDD   70 (79)
T ss_dssp             TCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC---------
T ss_pred             CCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECC-ccccCCC
Confidence            6777777667789999998777899999999987665 5666666

>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}

Probab=93.36  E-value=0.014  Score=67.04  Aligned_cols=78  Identities=22%  Similarity=0.364  Sum_probs=0.0

Q ss_pred             CCcccccCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEE-CCeeEEEEEEEeC--C----c-EEEecCCCCCCCHH
Q psy8552         418 EKTWLVRMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVC-SGAPKHCLVYETE--R----G-FGFAEPFNIYPSLG  487 (523)
Q Consensus       418 ~~~W~~~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~-~~~v~h~~I~~~~--~----~-~~~~~~~~~F~sl~  487 (523)
                      ..|-||+++-.+|++.|..+..|.++||+|+  .+..+++++. ++...|+-|.-.+  +    | .+.++ +..|.+|.
T Consensus      1023 ~HP~F~n~~~~qAe~~L~~~~~Gd~vIRPSSkG~dhLtvTwKv~d~vyqHidV~E~~K~n~~slG~~L~I~-~~~y~DLD 1101 (1219)
T 3psi_A         1023 NHPYYFPFNGRQAEDYLRSKERGEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELEKENPLALGKVLIVD-NQKYNDLD 1101 (1219)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCCCCCCHHHHHHHHhcCCCCCEEEeecCCCCCceEEEEEEcCCcEEEEEEEecCCccccccCceEEEC-CceECCHH
Confidence            3478889999999999998889999999999  4457778875 5777787777432  1    1 22333 35999999


Q ss_pred             HHHHHHhhC
Q psy8552         488 ALVLHYAAN  496 (523)
Q Consensus       488 ~LV~~y~~~  496 (523)
                      |||..|-+.
T Consensus      1102 Eli~r~V~p 1110 (1219)
T 3psi_A         1102 QIIVEYLQN 1110 (1219)
T ss_dssp             ---------
T ss_pred             HHHHHHHHH
Confidence            999988765

>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*

Probab=92.92  E-value=0.13  Score=49.37  Aligned_cols=42  Identities=21%  Similarity=0.358  Sum_probs=36.7

Q ss_pred             cccc-cCCHHHHHHHhcC--CCCCeEEeecCC--CCceEEEEEECCe
Q psy8552         420 TWLV-RMSRAQAEALLSG--RPDGTFLIRPST--TGQYALSIVCSGA  461 (523)
Q Consensus       420 ~W~~-~isr~~Ae~~L~~--~~~G~FLvR~s~--~~~~~Ls~~~~~~  461 (523)
                      |=|. .+|-+||.++|..  +..|+|++|-|.  .|.|+|+++....
T Consensus       244 pGy~aFlTydEv~~~L~~~~~kpGsYIfR~ScTrlGqwAIgyV~~~~  290 (329)
T 3bux_B          244 PGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADG  290 (329)
T ss_dssp             TTBCTTCCHHHHHHHHGGGTTSTTEEEEEECSSSTTSEEEEEECTTS
T ss_pred             cchhheeeHHHHHHHHHHhcCCCCcEEEEeccCccCceEEEEECCCC
Confidence            4577 8999999999987  679999999998  9999999987543

>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1

Probab=92.26  E-value=0.072  Score=55.96  Aligned_cols=70  Identities=23%  Similarity=0.360  Sum_probs=48.9

Q ss_pred             Ccccc-cCCHHHHHHHhcCCCCCeEEeecCC---CCceEEEEEEC---C-eeEEEEEEEeCCcEEEecCCCCCCCHHHHH
Q psy8552         419 KTWLV-RMSRAQAEALLSGRPDGTFLIRPST---TGQYALSIVCS---G-APKHCLVYETERGFGFAEPFNIYPSLGALV  490 (523)
Q Consensus       419 ~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~---~~~~~Ls~~~~---~-~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV  490 (523)
                      ..|.. .|++++|+.+|++++.|+||+|.|+   .|.++++++..   + .+.++.+..-..+ -+     .=-||.|.|
T Consensus       440 dG~I~GFIsK~~a~~lL~~~~~GTFLLRFSdS~~~GgITia~V~~~~~~~~~~v~~v~P~T~k-dl-----~~~sL~d~i  513 (575)
T 1bf5_A          440 DGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEPYTKK-EL-----SAVTFPDII  513 (575)
T ss_dssp             TTCCCCCCCHHHHHHHTTTCCSCCCCEEECSSCSSCCEEEEECCCCSSSSCCCCEECCCBCHH-HH-----HSSCHHHHH
T ss_pred             CCceEEeecHHHHHHHHhCCCCCeEEEecCCCCCCCcEEEEEEecCCCCccceeEecCCCchh-hh-----hhCCHHHHh
Confidence            35666 7899999999999999999999887   78888888763   2 4444444432110 01     113788888


Q ss_pred             HHHh
Q psy8552         491 LHYA  494 (523)
Q Consensus       491 ~~y~  494 (523)
                      ..|.
T Consensus       514 ~d~~  517 (575)
T 1bf5_A          514 RNYK  517 (575)
T ss_dssp             HTCC
T ss_pred             hcch
Confidence            7775

>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A

Probab=92.08  E-value=0.016  Score=61.21  Aligned_cols=70  Identities=24%  Similarity=0.367  Sum_probs=51.6

Q ss_pred             Ccccc-cCCHHHHHHHhcCCCCCeEEeecCC---CCceEEEEEEC---CeeEEEEEEEeCCcEEEecCCCCCCCHHHHHH
Q psy8552         419 KTWLV-RMSRAQAEALLSGRPDGTFLIRPST---TGQYALSIVCS---GAPKHCLVYETERGFGFAEPFNIYPSLGALVL  491 (523)
Q Consensus       419 ~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~---~~~~~Ls~~~~---~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~  491 (523)
                      ..|.+ .|+|++|+++|.+++.|+||+|.|+   .|.++++++..   +.+.|+.|....      ...-.--||.|+|.
T Consensus       456 dG~I~Gfisk~~a~~lL~~~~~GTFLlRFSes~~~Ggitis~v~~~~~g~~~~~~v~P~t------~~~l~~~sLad~I~  529 (596)
T 1bg1_A          456 EGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVEPYT------KQQLNNMSFAEIIM  529 (596)
T ss_dssp             SSCCCBCCCTTGGGTTTTTSCTTCBCEEECSSCSSCCEEECCCCSSSCSSCCCCCCCCBC------GGGGTSSCHHHHTT
T ss_pred             cCCeEEEecHHHHHHHHhCCCCCeeEEeecCCCCCCcEEEEEEecCCCCceeEEecCCCc------hhhhccCCHHHHHH
Confidence            36777 8999999999999999999999887   78899988763   456566665421      11112348999997


Q ss_pred             HHh
Q psy8552         492 HYA  494 (523)
Q Consensus       492 ~y~  494 (523)
                      .|+
T Consensus       530 d~~  532 (596)
T 1bg1_A          530 GYK  532 (596)
T ss_dssp             SCC
T ss_pred             hhh
Confidence            663

>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}

Probab=92.01  E-value=0.28  Score=46.88  Aligned_cols=46  Identities=24%  Similarity=0.422  Sum_probs=38.6

Q ss_pred             Ccccc-cCCHHHHHHHhc--CCCCCeEEeecCC--CCceEEEEEEC-CeeEE
Q psy8552         419 KTWLV-RMSRAQAEALLS--GRPDGTFLIRPST--TGQYALSIVCS-GAPKH  464 (523)
Q Consensus       419 ~~W~~-~isr~~Ae~~L~--~~~~G~FLvR~s~--~~~~~Ls~~~~-~~v~h  464 (523)
                      .|=|. .||-+||.++|.  .+..|+|++|.|.  .|.|+|+++.. +.+.|
T Consensus       228 hpGy~aFlTydEV~~~L~~~~~KpGsYIfR~ScTrlGqwAIgYV~s~g~I~q  279 (323)
T 3op0_A          228 HPGYMAFLTYDEVQERLQACRDKPGSYIFRPSCTRLGQWAIGYVSSDGSILQ  279 (323)
T ss_dssp             CTTBCTTCCHHHHHHHTTGGGGSTTEEEEEECSSSTTCEEEEEECTTSCEEE
T ss_pred             CcceeeeeeHHHHHHHHHHhccCCCcEEEEeccCccCceEEEEEcCCCceee
Confidence            45677 999999999998  6679999999998  99999999874 44443

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=91.88  E-value=0.015  Score=42.94  Aligned_cols=35  Identities=11%  Similarity=-0.046  Sum_probs=29.7

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.+++..+.+||.+++..++..|++|++++.+
T Consensus        28 Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~   62 (65)
T 2lj0_A           28 GDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP   62 (65)
T ss_dssp             TCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEE
T ss_pred             CCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEE
Confidence            67888877777899999988888999999999754

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=91.49  E-value=0.031  Score=43.51  Aligned_cols=44  Identities=2%  Similarity=-0.206  Sum_probs=32.9

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV  423 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~  423 (523)
                      .+++.++...+.+||.++  ..+..|++|++++.... .....|||+
T Consensus        39 Gd~i~Vl~~~~~gWw~g~--~~g~~G~~P~~yv~~~~-~~~~~p~~~   82 (83)
T 1neg_A           39 GDILTLLNSTNKDWWKVE--VNDRQGFVPAAYVKKLA-AAWSHPQFE   82 (83)
T ss_dssp             TCEEEEEECCSSSEEEEE--ETTEEEEEEGGGEEECC-TTSCCCCC-
T ss_pred             CCEEEEEEecCCCEEEEE--ECCeEEEEEHHHEEECC-CCCCCCCcC
Confidence            677777766677999984  45689999999977655 455578885

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=91.14  E-value=0.022  Score=43.13  Aligned_cols=40  Identities=5%  Similarity=-0.204  Sum_probs=26.0

Q ss_pred             cccccccccc-ccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc
Q psy8552         377 RFSSDVDADI-HSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV  423 (523)
Q Consensus       377 ~~~~~l~k~~-~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~  423 (523)
                      .+++.+++.. +.+||.++.  .+..|++|++++..     ..++|||
T Consensus        31 Gd~i~v~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~-----~~~~w~~   71 (74)
T 1gbq_A           31 GDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIEM-----KPHPEFI   71 (74)
T ss_dssp             TCEEECCBCSSCSSEEEEEE--TTEEEEEEGGGEEE-----EC-----
T ss_pred             CCEEEEeEecCCCCEEEEEE--CCCEEEEehHhEEE-----cCCcccc
Confidence            5777775544 668999885  56899999999753     3468998

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.33  E-value=0.045  Score=42.63  Aligned_cols=44  Identities=2%  Similarity=-0.271  Sum_probs=33.5

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCC-CCCCCCCcc
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTV-DFESGEKTW  421 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~-~~~~~~~~W  421 (523)
                      .+++.+++..+.+||.++. ..+..|++|++++... +.+++.++|
T Consensus        41 Gd~i~v~~~~~~~Ww~~~~-~~g~~G~~P~~yv~~~~~~~l~~~~W   85 (85)
T 2yuq_A           41 NEEYCLLDSSEIHWWRVQD-RNGHEGYVPSSYLVEKSPNNLETYEW   85 (85)
T ss_dssp             TEEEEEEECCSSSEEEEEC-SSSCEEEEETTTCEECCCCSCCCCCC
T ss_pred             CCEEEEEEecCCCeEEEEE-CCCCEEEEehHHeEEccCCCcccCCC
Confidence            6778887767789999876 3468999999998764 225777787

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=90.15  E-value=0.031  Score=41.72  Aligned_cols=37  Identities=3%  Similarity=-0.231  Sum_probs=29.6

Q ss_pred             ccccccccc-cccchhHHHhhhhhcccccccccCCCCC
Q psy8552         377 RFSSDVDAD-IHSNDVDKYINLKIAFTNLSGAVASTVD  413 (523)
Q Consensus       377 ~~~~~l~k~-~~~~w~~~r~~~~~~~g~~p~~~~~~~~  413 (523)
                      .+++.+++. .+.+||.+++..++..|++|++++.+.+
T Consensus        32 Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~   69 (70)
T 1gcq_C           32 GDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   69 (70)
T ss_dssp             TCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             CCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEECC
Confidence            678888655 5789999987777899999999976543

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=90.08  E-value=0.037  Score=42.34  Aligned_cols=37  Identities=3%  Similarity=-0.231  Sum_probs=29.8

Q ss_pred             ccccccccc-cccchhHHHhhhhhcccccccccCCCCC
Q psy8552         377 RFSSDVDAD-IHSNDVDKYINLKIAFTNLSGAVASTVD  413 (523)
Q Consensus       377 ~~~~~l~k~-~~~~w~~~r~~~~~~~g~~p~~~~~~~~  413 (523)
                      .+++.+++. .+.+||.+++..++..|++|++++.+.+
T Consensus        40 Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~~   77 (78)
T 1k1z_A           40 GDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   77 (78)
T ss_dssp             TCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEESC
T ss_pred             CCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEECC
Confidence            678888665 4889999998777899999999976543

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=89.19  E-value=0.033  Score=39.76  Aligned_cols=34  Identities=6%  Similarity=-0.337  Sum_probs=28.4

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS  410 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~  410 (523)
                      .+++.+++..+.+||.++...++..|++|++++.
T Consensus        23 Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~   56 (58)
T 1zuy_A           23 GDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK   56 (58)
T ss_dssp             TCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEE
T ss_pred             CCEEEEEEecCCCeEEEEECCCCCEEEecHHHEE
Confidence            6777776666788999999888899999999864

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=88.70  E-value=0.13  Score=39.18  Aligned_cols=34  Identities=0%  Similarity=-0.424  Sum_probs=27.6

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.+++..+.+||.++. ..+..|++|++++..
T Consensus        42 Gd~i~v~~~~~~~Ww~~~~-~~g~~G~~P~~yv~~   75 (77)
T 1awj_A           42 DEEYYLLDSSEIHWWRVQD-KNGHEGYAPSSYLVE   75 (77)
T ss_dssp             SSCCSCCCTTSSSBCCCCC-SSSCCCCCBSTTCCC
T ss_pred             CCEEEEEEecCCCCEEEEE-CCCCEEEEehHHEEE
Confidence            6788887777789999987 457899999999764

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=88.51  E-value=0.057  Score=39.12  Aligned_cols=33  Identities=0%  Similarity=-0.355  Sum_probs=26.2

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS  410 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~  410 (523)
                      .+++.+++..+.+||.+++. .+..|++|++|+.
T Consensus        26 Gd~i~v~~~~~~~Ww~g~~~-~G~~G~fP~nyVe   58 (60)
T 2lx7_A           26 GELITLLQVPDGGWWEGEKE-DGLRGWFPASYVQ   58 (60)
T ss_dssp             TCEEEBSCCCTTSCEEEECT-TSCEEEECGGGEE
T ss_pred             CCEEEEeEecCCCeEEEEeC-CCCEEEEcHHHEE
Confidence            67888877777899999853 4578999999864

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=88.48  E-value=0.047  Score=39.00  Aligned_cols=34  Identities=3%  Similarity=-0.335  Sum_probs=28.7

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS  410 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~  410 (523)
                      .+++.+++..+.+||.++...++..|++|++++.
T Consensus        22 Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~   55 (58)
T 1jo8_A           22 NDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS   55 (58)
T ss_dssp             TCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEE
T ss_pred             CCEEEEEEecCCCcEEEEECCCCCEEEechHHeE
Confidence            6777777767789999999878899999999864

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=87.90  E-value=0.061  Score=40.59  Aligned_cols=35  Identities=3%  Similarity=-0.330  Sum_probs=29.1

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.+++..+.+||.++...++..|++|+++++.
T Consensus        27 Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~   61 (73)
T 2lcs_A           27 GDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSY   61 (73)
T ss_dssp             TCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEE
T ss_pred             CCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEE
Confidence            67777766677789999998778999999999654

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=87.76  E-value=0.14  Score=40.49  Aligned_cols=43  Identities=2%  Similarity=-0.078  Sum_probs=31.5

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV  423 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~  423 (523)
                      .+++.++...+.+||.++.  .+..|++|++++...+  ....++++
T Consensus        40 Gd~i~V~~~~~~gWw~g~~--~g~~G~fPsnyV~~~~--~~~~~~~~   82 (92)
T 2o2o_A           40 GDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFIKELS--GESDELGI   82 (92)
T ss_dssp             SCEEECCCGGGSSCBCCEE--TTEECCBCSSSEECCS--SCSSTTTT
T ss_pred             CCEEEEeEecCCCEEEEEE--CCeEEEeehHHEEECC--CCCccccc
Confidence            6777777767789999986  5689999999976544  23334544

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=87.71  E-value=0.051  Score=40.39  Aligned_cols=36  Identities=8%  Similarity=-0.301  Sum_probs=29.7

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTV  412 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~  412 (523)
                      .+++.++...+.+||.++...++..|++|++++...
T Consensus        25 Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   60 (69)
T 1ruw_A           25 GDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPY   60 (69)
T ss_dssp             TCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEEC
T ss_pred             CCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEc
Confidence            677777666678999999988889999999997543

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=87.69  E-value=0.022  Score=46.75  Aligned_cols=25  Identities=28%  Similarity=0.771  Sum_probs=21.7

Q ss_pred             cCCCCCCCccccCCCHHHHHHHhcC
Q psy8552         209 TNSLRDAEWYWGDISRDDVNDKLAD  233 (523)
Q Consensus       209 ~~~l~~~~wyhg~isr~~Ae~lL~~  233 (523)
                      ...++.++||||.|+|.+||++|..
T Consensus        84 ~~~~~~~~w~~g~isR~~Ae~lL~~  108 (109)
T 2yt6_A           84 ADSIQAEEWYFGKMGRKDAESGPSS  108 (109)
T ss_dssp             SSSCTTTHHHHHCCCSCCCCCCSCC
T ss_pred             CCcccccccccCCcCHHHHHHHhhC
Confidence            4567888999999999999999864

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.13  E-value=0.082  Score=39.55  Aligned_cols=35  Identities=3%  Similarity=-0.294  Sum_probs=28.8

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.++...+.+||.++...++..|++|++++..
T Consensus        30 Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~   64 (71)
T 2gqi_A           30 GDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE   64 (71)
T ss_dssp             TCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEE
T ss_pred             CCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEE
Confidence            57777766667899999977778999999999754

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=87.00  E-value=0.061  Score=39.47  Aligned_cols=35  Identities=3%  Similarity=-0.294  Sum_probs=28.5

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.++...+.+||.++...++..|++|++++..
T Consensus        28 Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   62 (65)
T 2j05_A           28 GDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE   62 (65)
T ss_dssp             TCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEE
Confidence            57777766667799999977778999999999754

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=86.95  E-value=0.051  Score=38.91  Aligned_cols=35  Identities=3%  Similarity=-0.330  Sum_probs=28.5

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.+++..+.+||.++...++..|++|++++..
T Consensus        23 Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (59)
T 1yn8_A           23 GDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSY   57 (59)
T ss_dssp             TCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEE
T ss_pred             CCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEE
Confidence            56777766677789999988878999999998653

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=86.82  E-value=0.11  Score=38.27  Aligned_cols=35  Identities=0%  Similarity=-0.348  Sum_probs=27.9

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTV  412 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~  412 (523)
                      .+++.+++..+.+||.++.. .+..|++|++++...
T Consensus        24 Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A           24 GQEYIILEKNDLHWWRARDK-YGSEGYIPSNYVTGK   58 (67)
T ss_dssp             TCEEEEEECSSSSEEEEECS-SSCEEEEETTSEESS
T ss_pred             CCEEEEEEccCCCcEEEEEC-CCCEEEEEhHhEEEc
Confidence            57777777677899999854 468999999998765

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=86.81  E-value=0.058  Score=39.99  Aligned_cols=35  Identities=3%  Similarity=-0.312  Sum_probs=28.8

Q ss_pred             ccccccccccccchhHHHhhhhh---cccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKI---AFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~---~~g~~p~~~~~~  411 (523)
                      .+++.+++..+.+||.+++..++   ..|++|++++..
T Consensus        29 Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~   66 (68)
T 1tg0_A           29 DQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAV   66 (68)
T ss_dssp             TCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEE
T ss_pred             CCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEE
Confidence            57777776677899999998777   899999998653

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=86.42  E-value=0.09  Score=39.36  Aligned_cols=37  Identities=3%  Similarity=-0.247  Sum_probs=29.8

Q ss_pred             ccccccccc-cccchhHHHhhhhhcccccccccCCCCC
Q psy8552         377 RFSSDVDAD-IHSNDVDKYINLKIAFTNLSGAVASTVD  413 (523)
Q Consensus       377 ~~~~~l~k~-~~~~w~~~r~~~~~~~g~~p~~~~~~~~  413 (523)
                      .+++.+++. .+.+||.+++..++..|++|++++...+
T Consensus        30 Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~   67 (72)
T 1spk_A           30 GDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS   67 (72)
T ss_dssp             TCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECS
T ss_pred             CCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            577777654 7889999999877899999999976543

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=86.15  E-value=0.074  Score=39.21  Aligned_cols=35  Identities=3%  Similarity=-0.218  Sum_probs=28.8

Q ss_pred             cccccccc-ccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDA-DIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k-~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.++. +.+.+||.++...++..|++|++++..
T Consensus        29 Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~   64 (67)
T 2kxc_A           29 GDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKL   64 (67)
T ss_dssp             TCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEE
T ss_pred             CCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEE
Confidence            67777765 478899999988778999999998754

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.90  E-value=0.14  Score=39.97  Aligned_cols=43  Identities=9%  Similarity=-0.206  Sum_probs=32.0

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCccc
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWL  422 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~  422 (523)
                      .+++.+++..+.+||.++..  +..|++|++++.... ..+.++|.
T Consensus        39 Gd~i~v~~~~~~~Ww~g~~~--g~~G~~P~~yv~~~~-~~~~~~~~   81 (88)
T 1x2q_A           39 GEIIIVLDDSDANWWKGENH--RGIGLFPSNFVTTNL-NIETEAAA   81 (88)
T ss_dssp             SCEEEEEECSCSSSEEEEET--TEEEEECGGGEESCS-SCCSCCCS
T ss_pred             CCEEEEEEeCCCCEEEEEEC--CcEEEEehHHEEEcC-CcCccccc
Confidence            67788877777899999876  468999999977654 44445554

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=85.84  E-value=0.084  Score=39.60  Aligned_cols=35  Identities=0%  Similarity=-0.237  Sum_probs=28.6

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.++...+.+||.++....+..|++|++++.+
T Consensus        37 Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~   71 (73)
T 3h0h_A           37 GEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP   71 (73)
T ss_dssp             TCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEE
Confidence            57777776667889999987778899999998653

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=85.02  E-value=0.12  Score=39.97  Aligned_cols=37  Identities=8%  Similarity=-0.095  Sum_probs=28.9

Q ss_pred             ccccccccccccchhHHHhhh----hhcccccccccCCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINL----KIAFTNLSGAVASTVD  413 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~----~~~~g~~p~~~~~~~~  413 (523)
                      .+++.+++..+.+||.+++..    ++..|++|++++...+
T Consensus        41 GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           41 GDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             TCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             CCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            678888776777899998764    4689999999976543

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.98  E-value=0.11  Score=40.86  Aligned_cols=35  Identities=6%  Similarity=-0.174  Sum_probs=29.4

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.+++..+.+||.+++..++..|++|++++..
T Consensus        39 Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~   73 (90)
T 2yup_A           39 GEHICLIRKVNENWYEGRITGTGRQGIFPASYVQV   73 (90)
T ss_dssp             TCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEE
T ss_pred             CCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEE
Confidence            67788877777899999998778999999998653

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=84.87  E-value=0.15  Score=36.86  Aligned_cols=35  Identities=6%  Similarity=-0.168  Sum_probs=27.7

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVD  413 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~  413 (523)
                      .+++.+++..+.+||.++.  .+..|++|++++...+
T Consensus        27 Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S           27 GDIILVLSKVNEEWLEGES--KGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             SCEEEEEEESSSSCEEEEC--SSCEEEECGGGCCCSC
T ss_pred             CCEEEEEEeCCCCEEEEEE--CCcEEEEeHHHEEECC
Confidence            6777776666789999984  5689999999987654

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=84.73  E-value=0.085  Score=39.25  Aligned_cols=36  Identities=6%  Similarity=-0.152  Sum_probs=29.2

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTV  412 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~  412 (523)
                      .+++.+++..+.+||.++...++..|++|++++...
T Consensus        29 Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   64 (70)
T 2ecz_A           29 GERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI   64 (70)
T ss_dssp             TCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEES
T ss_pred             CCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEEC
Confidence            567777666677999999988789999999997643

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=84.70  E-value=0.092  Score=38.02  Aligned_cols=35  Identities=11%  Similarity=-0.166  Sum_probs=28.3

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.+++..+.+||.++...++..|++|++++..
T Consensus        25 Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~   59 (62)
T 2fpe_A           25 DDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE   59 (62)
T ss_dssp             TCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CCEEEEEEecCCCEEEEEECCCCCEEEechHHEEE
Confidence            57777766677899999876678999999998754

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=84.46  E-value=0.18  Score=36.96  Aligned_cols=34  Identities=3%  Similarity=0.005  Sum_probs=27.4

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTV  412 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~  412 (523)
                      .+++.++...+.+||.++.  .+..|++|++++...
T Consensus        23 Gd~i~v~~~~~~gWw~g~~--~g~~G~fP~~yv~~~   56 (65)
T 2fei_A           23 GDIIDINEEVEEGWWSGTL--NNKLGLFPSNFVKEL   56 (65)
T ss_dssp             TCEEECCCCSSSSEEEEES--SSCEEEEETTTSCBC
T ss_pred             CCEEEEEEecCCCEEEEEE--CCcEEEecHHHEEEc
Confidence            6777787777889999985  568999999997653

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=84.22  E-value=0.14  Score=38.78  Aligned_cols=37  Identities=8%  Similarity=-0.286  Sum_probs=29.6

Q ss_pred             ccccccccccccchhHHHhhhh-hcc------cccccccCCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLK-IAF------TNLSGAVASTVD  413 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~-~~~------g~~p~~~~~~~~  413 (523)
                      .+++.+++..+.+||.++...+ +..      |++|++++....
T Consensus        29 Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~   72 (77)
T 2d8j_A           29 GDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDS   72 (77)
T ss_dssp             TCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECC
T ss_pred             CCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcC
Confidence            6777777767889999999876 677      999999976543

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=84.09  E-value=0.11  Score=38.36  Aligned_cols=35  Identities=6%  Similarity=-0.186  Sum_probs=28.9

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.+++..+.+||.++...++..|++|++++..
T Consensus        28 Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~   62 (67)
T 2o9s_A           28 GERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV   62 (67)
T ss_dssp             TCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEE
T ss_pred             CCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEE
Confidence            57777766667799999998888999999998653

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=83.65  E-value=0.12  Score=37.89  Aligned_cols=35  Identities=0%  Similarity=-0.333  Sum_probs=27.4

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTV  412 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~  412 (523)
                      .+++.+++..+.+||.++... +..|++|++++...
T Consensus        25 Gd~i~v~~~~~~~Ww~g~~~~-g~~G~~P~~yv~~~   59 (65)
T 1b07_A           25 GDILRIRDKPEEQWWNAEDSE-GKRGMIPVPYVEKY   59 (65)
T ss_dssp             TCEEEEEECSSSSEEEEECTT-SCEEEEEGGGEEEC
T ss_pred             CCEEEEEEecCCCeEEEEECC-CCEEEEChHHEeec
Confidence            677788776778999998443 68999999997643

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=83.50  E-value=0.11  Score=37.58  Aligned_cols=33  Identities=0%  Similarity=-0.386  Sum_probs=25.5

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS  410 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~  410 (523)
                      .+++.+++..+ +||.++...++..|++|++++.
T Consensus        28 Gd~i~v~~~~~-~Ww~g~~~~~g~~G~~P~~yv~   60 (62)
T 2iim_A           28 GEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVA   60 (62)
T ss_dssp             TCEEEEEECCS-SEEEEEETTTCCEEEEEGGGEE
T ss_pred             CCEEEEEEcCC-CEEEEEECCCCCEEEEEHHHEE
Confidence            56777755544 8999987667789999999864

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=83.47  E-value=0.13  Score=36.55  Aligned_cols=33  Identities=6%  Similarity=-0.281  Sum_probs=26.0

Q ss_pred             ccccccccccc-cchhHHHhhhhhcccccccccC
Q psy8552         377 RFSSDVDADIH-SNDVDKYINLKIAFTNLSGAVA  409 (523)
Q Consensus       377 ~~~~~l~k~~~-~~w~~~r~~~~~~~g~~p~~~~  409 (523)
                      .+++.+++..+ .+||.++....+..|++|++++
T Consensus        23 Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv   56 (58)
T 1zuu_A           23 GDKISLVARDTGSGWTKINNDTTGETGLVPTTYI   56 (58)
T ss_dssp             TCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGE
T ss_pred             CCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHE
Confidence            56777755554 7899999876778999999985

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=83.36  E-value=0.12  Score=38.60  Aligned_cols=36  Identities=14%  Similarity=-0.130  Sum_probs=29.0

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTV  412 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~  412 (523)
                      .+++.++...+.+||.++...++..|++|++++...
T Consensus        28 Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~   63 (71)
T 2fpf_A           28 DDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEV   63 (71)
T ss_dssp             TCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEEC
Confidence            677777666778999998767789999999997543

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=83.08  E-value=0.13  Score=38.26  Aligned_cols=36  Identities=6%  Similarity=-0.280  Sum_probs=28.6

Q ss_pred             cccccccccc-ccchhHHHhhhhhcccccccccCCCC
Q psy8552         377 RFSSDVDADI-HSNDVDKYINLKIAFTNLSGAVASTV  412 (523)
Q Consensus       377 ~~~~~l~k~~-~~~w~~~r~~~~~~~g~~p~~~~~~~  412 (523)
                      .+++.++... +.+||.++....+..|++|++++...
T Consensus        28 Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   64 (71)
T 2jt4_A           28 GDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   64 (71)
T ss_dssp             TCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             CCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEEC
Confidence            5677776554 78999999877789999999997643

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.62  E-value=0.12  Score=38.33  Aligned_cols=35  Identities=11%  Similarity=-0.012  Sum_probs=28.6

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.+++..+.+||.++...++..|++|++++..
T Consensus        29 Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   63 (70)
T 2ct3_A           29 GDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP   63 (70)
T ss_dssp             TEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEE
T ss_pred             CCEEEEEEECCCCEEEEEECCCCCEEEechHHeEE
Confidence            56777766667899999988778999999999764

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=82.55  E-value=0.14  Score=38.79  Aligned_cols=36  Identities=6%  Similarity=-0.271  Sum_probs=28.6

Q ss_pred             ccccccccccccchhHHHhhh-hhcccccccccCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINL-KIAFTNLSGAVASTV  412 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~-~~~~g~~p~~~~~~~  412 (523)
                      .+++.+++..+.+||.+++.. ++..|++|++++...
T Consensus        32 Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~   68 (76)
T 2ed1_A           32 GEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHIL   68 (76)
T ss_dssp             SCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEEC
T ss_pred             CCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEEC
Confidence            577778777788999999764 568999999996543

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=82.46  E-value=0.19  Score=38.12  Aligned_cols=36  Identities=8%  Similarity=-0.126  Sum_probs=26.9

Q ss_pred             ccccccccc-cccchhHHHhhhhhcccccccccCCCCC
Q psy8552         377 RFSSDVDAD-IHSNDVDKYINLKIAFTNLSGAVASTVD  413 (523)
Q Consensus       377 ~~~~~l~k~-~~~~w~~~r~~~~~~~g~~p~~~~~~~~  413 (523)
                      .+++.+++. .+.+||.++.. .+..|++|++++...+
T Consensus        32 Gd~i~v~~~~~~~gW~~g~~~-~g~~G~~P~~yv~~~~   68 (77)
T 2enm_A           32 GEIITVTNPNVGGGWLEGKNN-KGEQGLVPTDYVEILP   68 (77)
T ss_dssp             TCEEEEEESCCSSSEEEEECT-TCCEEEEETTTEEEEC
T ss_pred             CCEEEEeEccCCCCeEEEEEC-CCCEEEeehHHeEECC
Confidence            567777555 36899999854 3789999999976544

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=82.44  E-value=0.13  Score=36.74  Aligned_cols=34  Identities=3%  Similarity=-0.331  Sum_probs=27.3

Q ss_pred             ccccccccc-cccchhHHHhhhhhcccccccccCC
Q psy8552         377 RFSSDVDAD-IHSNDVDKYINLKIAFTNLSGAVAS  410 (523)
Q Consensus       377 ~~~~~l~k~-~~~~w~~~r~~~~~~~g~~p~~~~~  410 (523)
                      .+++.++.. .+.+||.++....+..|++|++++.
T Consensus        24 Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~   58 (60)
T 2v1q_A           24 GDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE   58 (60)
T ss_dssp             TCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEE
T ss_pred             CCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            567777665 4789999998777899999999864

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=82.31  E-value=0.15  Score=36.06  Aligned_cols=33  Identities=0%  Similarity=-0.344  Sum_probs=26.0

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS  410 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~  410 (523)
                      .+++.+++..+.+||.++... +..|++|++++.
T Consensus        23 Gd~i~v~~~~~~~Ww~g~~~~-g~~G~~P~~yv~   55 (57)
T 1cka_A           23 GDILRIRDKPEEQWWNAEDSE-GKRGMIPVPYVE   55 (57)
T ss_dssp             TCEEEEEECSSSSEEEEECTT-SCEEEEEGGGEE
T ss_pred             CCEEEEEEecCCCcEEEEeCC-CCEEEEeHHHEE
Confidence            577777666778999998544 689999999864

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=82.30  E-value=0.14  Score=36.36  Aligned_cols=33  Identities=3%  Similarity=-0.135  Sum_probs=26.6

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.+++..+.+||.++.  .+..|++|++++..
T Consensus        23 Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~   55 (58)
T 1uti_A           23 GEVVEVLDSSNPSWWTGRL--HNKLGLFPANYVAP   55 (58)
T ss_dssp             TCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEE
T ss_pred             CCEEEEEEECCCCEEEEEE--CCeEEEeeHHHeEE
Confidence            5777777667789999987  46899999998654

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=82.18  E-value=0.13  Score=37.22  Aligned_cols=35  Identities=6%  Similarity=-0.286  Sum_probs=28.1

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.++...+.+||.++...++..|++|++++..
T Consensus        28 Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~   62 (64)
T 4f14_A           28 GDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF   62 (64)
T ss_dssp             TCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEE
T ss_pred             CCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEE
Confidence            56777766667899999988778999999998643

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=82.13  E-value=0.31  Score=35.73  Aligned_cols=35  Identities=0%  Similarity=-0.313  Sum_probs=27.3

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTV  412 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~  412 (523)
                      .+++.+++..+.+||.++.. .+..|++|++++...
T Consensus        30 Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~   64 (67)
T 1aww_A           30 GDEYFILEESNLPWWRARDK-NGQEGYIPSNYVTEA   64 (67)
T ss_dssp             SCEEECCCCCSSSEECCBCT-TSCBCCEETTTBCCS
T ss_pred             CCEEEEEEccCCCcEEEEEC-CCCEEEEchHhEEEc
Confidence            56777776677899998853 468999999997654

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=81.96  E-value=0.13  Score=38.10  Aligned_cols=36  Identities=8%  Similarity=-0.159  Sum_probs=28.7

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTV  412 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~  412 (523)
                      .+++.+++..+.+||.++...++..|++|++++...
T Consensus        29 Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   64 (70)
T 2cuc_A           29 GEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPV   64 (70)
T ss_dssp             TCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEEC
T ss_pred             CCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEEC
Confidence            567777666678999999777789999999997643

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=81.95  E-value=0.11  Score=37.77  Aligned_cols=34  Identities=3%  Similarity=-0.186  Sum_probs=27.2

Q ss_pred             ccccccccccccchhHHHhhhh------hcccccccccCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLK------IAFTNLSGAVAS  410 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~------~~~g~~p~~~~~  410 (523)
                      .+++.++...+.+||.++...+      +..|++|++++.
T Consensus        23 Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~   62 (65)
T 2oaw_A           23 GDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK   62 (65)
T ss_dssp             TCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEE
T ss_pred             CCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeE
Confidence            5777777767789999988744      789999999864

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=81.44  E-value=0.17  Score=37.15  Aligned_cols=35  Identities=0%  Similarity=-0.357  Sum_probs=27.7

Q ss_pred             cccccccc-ccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDA-DIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k-~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.+++ ..+.+||.++...++..|++|++++..
T Consensus        30 Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~   65 (67)
T 3rnj_A           30 GDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV   65 (67)
T ss_dssp             TCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEE
Confidence            67777753 457799999977778999999998653

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=81.07  E-value=0.2  Score=38.48  Aligned_cols=34  Identities=0%  Similarity=-0.236  Sum_probs=25.3

Q ss_pred             cccccccccc--ccchhHHHhhhhh--cccccccccCC
Q psy8552         377 RFSSDVDADI--HSNDVDKYINLKI--AFTNLSGAVAS  410 (523)
Q Consensus       377 ~~~~~l~k~~--~~~w~~~r~~~~~--~~g~~p~~~~~  410 (523)
                      .+.++++...  +.+||.+|.....  ++||+|++++.
T Consensus        39 Gd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl~   76 (82)
T 1u3o_A           39 GQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTLC   76 (82)
T ss_dssp             TCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGSC
T ss_pred             CCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEEe
Confidence            5777775443  5899999874433  67999999973

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=81.03  E-value=0.21  Score=52.68  Aligned_cols=46  Identities=4%  Similarity=-0.301  Sum_probs=37.8

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCCCCCCCCcccc
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVDFESGEKTWLV  423 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~~~~~~~~W~~  423 (523)
                      .|++.++...+.+||.++...++..|++|++++++.. ..+.+|||.
T Consensus       464 GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~-~~~~~p~y~  509 (526)
T 2de0_X          464 GDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKI-ETVKYPTYP  509 (526)
T ss_dssp             TCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECC-CEECCCCCC
T ss_pred             CCEEEEccccCCCeeEEEeCCCCCEEEECchheeEcc-cCCCCCChh
Confidence            5677776667889999987777899999999988765 677889996

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=81.01  E-value=0.17  Score=36.01  Aligned_cols=33  Identities=3%  Similarity=-0.294  Sum_probs=26.5

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.++...+.+||.++.  .+..|++|++++..
T Consensus        23 Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~   55 (58)
T 2bz8_A           23 GEIITNIRKEDGGWWEGQI--NGRRGLFPDNFVRE   55 (58)
T ss_dssp             TCEEEEEECCTTTEEEEEE--TTEEEEEEGGGEEE
T ss_pred             CCEEEEEEeCCCCEEEEEE--CCeEEEEehHHeEE
Confidence            6777776666789999986  56899999998654

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.84  E-value=0.22  Score=38.28  Aligned_cols=36  Identities=3%  Similarity=-0.283  Sum_probs=27.4

Q ss_pred             ccccccccccc-cchhHHHhhhhhcccccccccCCCC
Q psy8552         377 RFSSDVDADIH-SNDVDKYINLKIAFTNLSGAVASTV  412 (523)
Q Consensus       377 ~~~~~l~k~~~-~~w~~~r~~~~~~~g~~p~~~~~~~  412 (523)
                      .+++.++...+ .+||.+++...+..|++|++++...
T Consensus        39 Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   75 (81)
T 1x6g_A           39 GDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRER   75 (81)
T ss_dssp             TCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEc
Confidence            57777755444 4899998766788999999997643

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=80.23  E-value=0.17  Score=36.05  Aligned_cols=32  Identities=0%  Similarity=-0.225  Sum_probs=25.8

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS  410 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~  410 (523)
                      .+++.+++..+.+||.++.  .+..|++|++++.
T Consensus        24 Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~   55 (58)
T 1zx6_A           24 GDKVQLLEKLSPEWYKGSC--NGRTGIFPANYVK   55 (58)
T ss_dssp             TCEEEEEEECSSSEEEEEE--TTEEEEEEGGGEE
T ss_pred             CCEEEEEEecCCCEEEEEE--CCcEEEeeHHHEE
Confidence            5777776666789999986  5689999999864

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.22  E-value=0.17  Score=38.77  Aligned_cols=34  Identities=6%  Similarity=-0.224  Sum_probs=27.8

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.+++ .+.+||.++...++..|++|++++..
T Consensus        39 Gd~i~v~~-~~~~Ww~~~~~~~g~~G~~P~~yv~~   72 (79)
T 2cud_A           39 GEKLRVIS-DEGGWWKAISLSTGRESYIPGICVAR   72 (79)
T ss_dssp             TCEEEEEE-EETTEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CCEEEEEe-cCCCeEEEEECCCCCEEEeeHHHeEE
Confidence            57777766 46799999988778999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	523
d1fu6a_	111	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	2e-32
d1fu6a_	111	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	4e-20
d1fu6a_	111	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	2e-10
d1qada_	107	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	5e-27
d1qada_	107	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	2e-26
d1qada_	107	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	3e-07
d2izva2	112	d.93.1.1 (A:274-385) Suppressor of cytokine signal	2e-26
d2izva2	112	d.93.1.1 (A:274-385) Suppressor of cytokine signal	2e-16
d2izva2	112	d.93.1.1 (A:274-385) Suppressor of cytokine signal	1e-04
d1mila_	104	d.93.1.1 (A:) Shc adaptor protein {Human (Homo sap	2e-25
d1mila_	104	d.93.1.1 (A:) Shc adaptor protein {Human (Homo sap	1e-17
d2shpa2	109	d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Huma	3e-24
d2shpa2	109	d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Huma	3e-16
d2shpa2	109	d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Huma	8e-05
d1jwoa_	97	d.93.1.1 (A:) Csk homologous kinase Chk {Human (Ho	3e-24
d1jwoa_	97	d.93.1.1 (A:) Csk homologous kinase Chk {Human (Ho	1e-16
d1r1qa_	97	d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA	1e-23
d1r1qa_	97	d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA	9e-19
d2c9wa2	103	d.93.1.1 (A:32-134) Suppressor of cytokine signali	2e-23
d2c9wa2	103	d.93.1.1 (A:32-134) Suppressor of cytokine signali	1e-14
d1k9aa2	101	d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (	4e-23
d1k9aa2	101	d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (	2e-17
d1k9aa2	101	d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (	7e-04
d1nrva_	105	d.93.1.1 (A:) Growth factor receptor-bound protein	1e-21
d1nrva_	105	d.93.1.1 (A:) Growth factor receptor-bound protein	9e-17
d2eyva1	109	d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo	6e-21
d2eyva1	109	d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo	9e-17
d1opka2	101	d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (M	7e-21
d1opka2	101	d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (M	3e-18
d1rpya_	86	d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus nor	4e-20
d1rpya_	86	d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus nor	3e-13
d1jyra_	96	d.93.1.1 (A:) Growth factor receptor-bound protein	4e-20
d1jyra_	96	d.93.1.1 (A:) Growth factor receptor-bound protein	1e-15
d1bg1a3	141	d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus)	4e-20
d1bg1a3	141	d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus)	6e-10
d1d4ta_	104	d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sap	6e-20
d1d4ta_	104	d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sap	1e-15
d2qmsa1	113	d.93.1.1 (A:420-532) Growth factor receptor-bound	8e-20
d2qmsa1	113	d.93.1.1 (A:420-532) Growth factor receptor-bound	1e-15
d2qmsa1	113	d.93.1.1 (A:420-532) Growth factor receptor-bound	8e-05
d1rjaa_	100	d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tu	9e-20
d1rjaa_	100	d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tu	4e-16
d1rjaa_	100	d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tu	3e-04
d1xa6a2	141	d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal dom	9e-20
d1xa6a2	141	d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal dom	7e-17
d2shpa3	108	d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Hu	1e-19
d2shpa3	108	d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Hu	2e-13
d2shpa3	108	d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Hu	3e-04
d1lkka_	105	d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo	1e-19
d1lkka_	105	d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo	1e-15
d1o48a_	106	d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo s	1e-19
d1o48a_	106	d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo s	4e-15
d1qcfa2	103	d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {H	2e-19
d1qcfa2	103	d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {H	5e-15
d2cs0a1	106	d.93.1.1 (A:8-113) Hematopoietic SH2 domain contai	3e-19
d2cs0a1	106	d.93.1.1 (A:8-113) Hematopoietic SH2 domain contai	5e-15
d2cs0a1	106	d.93.1.1 (A:8-113) Hematopoietic SH2 domain contai	2e-04
d1g83a2	104	d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (H	3e-19
d1g83a2	104	d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (H	1e-14
d2fcia1	105	d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (B	3e-19
d2fcia1	105	d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (B	1e-13
d2oq1a1	130	d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70	4e-19
d2oq1a1	130	d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70	2e-15
d2oq1a1	130	d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70	5e-04
d1luia_	108	d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mou	1e-18
d1luia_	108	d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mou	2e-12
d1luia_	108	d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mou	0.002
d2oq1a2	124	d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-7	1e-18
d2oq1a2	124	d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-7	1e-16
d1i3za_	103	d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat	2e-18
d1i3za_	103	d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat	1e-15
d1a81a1	129	d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Hom	1e-17
d1a81a1	129	d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Hom	2e-15
d1blja_	114	d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mou	2e-17
d1blja_	114	d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mou	2e-13
d1a81a2	125	d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (H	2e-16
d1a81a2	125	d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (H	2e-15
d1uura3	131	d.93.1.1 (A:577-707) STAT homologue {Dictyostelium	2e-12
d1uura3	131	d.93.1.1 (A:577-707) STAT homologue {Dictyostelium	2e-11
d1xa6a1	196	a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d	3e-10
d1pbwa_	184	a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu	7e-10
d1tx4a_	196	a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi	8e-10
d1f7ca_	191	a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI	6e-09

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 111

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  117 bits (295), Expect = 2e-32
 Identities = 78/105 (74%), Positives = 94/105 (89%), Gaps = 1/105 (0%)

Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHR 269
           SL+DAEWYWGDISR++VN+KL DTADGTFLVRD STK +G+YTLTLRKGG NK IKIFHR
Sbjct: 7   SLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHR 66

Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRF 314
           +G+YGFS+P  F SVVELIN+Y++ESL+QYN  LD +LLYPVS++
Sbjct: 67  DGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSKY 111

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 111

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.5 bits (206), Expect = 4e-20
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
            +SR +    L    DGTFL+R ++T   G Y L++   G  K   ++  +  +GF++P 
Sbjct: 17  DISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKYGFSDPL 76

Query: 481 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
             + S+  L+ HY   SL ++N  L   L YPV
Sbjct: 77  T-FNSVVELINHYRNESLAQYNPKLDVKLLYPV 108

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 111

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.8 bits (134), Expect = 2e-10
 Identities = 26/40 (65%), Positives = 34/40 (85%)

Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRF 378
           FS+P  F SVVELIN+Y++ESL+QYN  LD +LLYPVS++
Sbjct: 72  FSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSKY 111

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 107

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  102 bits (256), Expect = 5e-27
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR- 269
              +  W  G  +R+   + L    DGTFLVR+ S+K G Y  ++   G  K   I    
Sbjct: 5   HHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRE-SSKQGCYACSVVVDGEVKHCVINKTA 63

Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
            G         ++S+ EL+ +Y+H SL Q+N +L+  L YPV
Sbjct: 64  TGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPV 105

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 107

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (252), Expect = 2e-26
 Identities = 56/100 (56%), Positives = 70/100 (70%), Gaps = 2/100 (2%)

Query: 418 EKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFG 475
           EKTW V   +R +AE LL G+ DGTFL+R S+  G YA S+V  G  KHC++ +T  G+G
Sbjct: 8   EKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYG 67

Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 515
           FAEP+N+Y SL  LVLHY   SL +HND L  TLAYPV+A
Sbjct: 68  FAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 107

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 107

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 375
                 ++S+ EL+ +Y+H SL Q+N +L+  L YPV
Sbjct: 69  AEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPV 105

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 2e-26
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 7/111 (6%)

Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
           P+   + +   YWG + +      L    +GTFL+RD++ ++  ++++ R+   +   +I
Sbjct: 3   PDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARI 62

Query: 267 FHRNGRYGF----SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
              N  + F       F    +  L+ +YK  S   +   L   L  P+ R
Sbjct: 63  EQWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPL---LSTPLIR 110

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (179), Expect = 2e-16
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 8/98 (8%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAE--- 478
            M +  AEALL G+P+GTFL+R S      +++S        H  + +    F F     
Sbjct: 17  VMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDP 76

Query: 479 PFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 516
                P +  L+ HY   S     + L   L+ P+   
Sbjct: 77  CVFHSPDITGLLEHYKDPSACMFFEPL---LSTPLIRT 111

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 340 SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
              F    +  L+ +YK  S   +   L   L  P+ R
Sbjct: 76  PCVFHSPDITGLLEHYKDPSACMFFEPL---LSTPLIR 110

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.1 bits (244), Expect = 2e-25
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR 269
           + LR   W+ G +SR +    L    +G FLVR+++T  G+Y LT  + G  K + +   
Sbjct: 2   SQLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDP 59

Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
            G     +  +F SV  LI+Y+    L   ++  +  L  PV R
Sbjct: 60  EGVVRTKDH-RFESVSHLISYHMDNHLPIISAGSELCLQQPVER 102

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (187), Expect = 1e-17
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 6/92 (6%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
           ++SR +AEALL  + +G FL+R STT  GQY L+ + SG PKH L+ + E      +  +
Sbjct: 13  KLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKD--H 68

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + S+  L+ ++  N L   +   +  L  PV
Sbjct: 69  RFESVSHLISYHMDNHLPIISAGSELCLQQPV 100

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.5 bits (237), Expect = 3e-24
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 2/103 (1%)

Query: 213 RDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG 271
           +   W+  +I+  +  + L     DG+FL R + +  G+ TL++R+ G    IKI +   
Sbjct: 1   KSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGD 60

Query: 272 RYGFSEPFKFTSVVELINYYKHESLSQY-NSTLDTRLLYPVSR 313
            Y      KF ++ EL+ YY          +     L YP++ 
Sbjct: 61  YYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNC 103

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (177), Expect = 3e-16
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 424 RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
            ++  +AE LL  R  DG+FL RPS +  G   LS+  +GA  H  +  T   +      
Sbjct: 9   NITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYGG- 67

Query: 481 NIYPSLGALVLHYAANSLEEHNDD-LKTTLAYPV 513
             + +L  LV +Y  +  +    +     L YP+
Sbjct: 68  EKFATLAELVQYYMEHHGQLKEKNGDVIELKYPL 101

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 8e-05
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 339 FSEPFKFTSVVELINYYKHESLSQY-NSTLDTRLLYPVSR 377
                KF ++ EL+ YY          +     L YP++ 
Sbjct: 64  LYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNC 103

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (235), Expect = 3e-24
 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG 271
           L    W+ G IS  +   +L    DG FLVR+++   G+Y L +  G      ++ HR+G
Sbjct: 1   LSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDG 60

Query: 272 RYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
                E   F ++++++ +Y  +  +     + T+L+ P  +
Sbjct: 61  HLTIDEAVFFCNLMDMVEHYSKDKGA-----ICTKLVRPKRK 97

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (179), Expect = 1e-16
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
           ++S  +A   L    DG FL+R S    G Y L +       H  V   +      E   
Sbjct: 10  KISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEA-V 68

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + +L  +V HY      +    + T L  P 
Sbjct: 69  FFCNLMDMVEHY-----SKDKGAICTKLVRPK 95

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.0 bits (231), Expect = 1e-23
 Identities = 20/89 (22%), Positives = 43/89 (48%)

Query: 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG 271
           +   EW+   +SR    + L     G F++R + +  G++++++R     +  K+     
Sbjct: 3   IEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTK 62

Query: 272 RYGFSEPFKFTSVVELINYYKHESLSQYN 300
              F    KF S+ +L++YY+  S+S+  
Sbjct: 63  GNYFLWTEKFPSLNKLVDYYRTTSISKQK 91

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.2 bits (195), Expect = 9e-19
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 412 VDFESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVY 468
           +D E  E  W    +SR QAE LL G+  G F+IR S +  G +++S+      +H  V 
Sbjct: 1   IDIEFPE--WFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVM 58

Query: 469 ETERGFGFAEPFNIYPSLGALVLHYAANSLEEHND 503
              +G  F      +PSL  LV +Y   S+ +   
Sbjct: 59  RDTKGNYFLWT-EKFPSLNKLVDYYRTTSISKQKQ 92

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.8 bits (230), Expect = 2e-23
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
                L    WYWG ++ ++  +KL +  +GTFL+RD+S  +   T++++       ++I
Sbjct: 7   KALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRI 66

Query: 267 FHRNGRYGFSEPF-------KFTSVVELINYYKHES 295
            +++G++             +F SVV LI+YY    
Sbjct: 67  EYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMC 102

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (165), Expect = 1e-14
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
            M+  +A+  L   P+GTFLIR S+       +S+  S  P +  +   +  F       
Sbjct: 21  SMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIIC 80

Query: 482 I------YPSLGALVLHYAANS 497
           +      + S+  L+ +Y    
Sbjct: 81  VKSKLKQFDSVVHLIDYYVQMC 102

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (227), Expect = 4e-23
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNG 271
           L    W+ G I+R+     L     G FLVR+++   G+YTL +   G  +  +I +   
Sbjct: 1   LSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHAS 60

Query: 272 RYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSS 316
           +    E   F ++++L+ +Y  ++       L TRL+ P     +
Sbjct: 61  KLSIDEEVYFENLMQLVEHYTTDADG-----LCTRLIKPKVMEGT 100

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (186), Expect = 2e-17
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
           +++R QAE LL     G FL+R ST   G Y L + C G  +H  +          E   
Sbjct: 10  KITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEE-V 68

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + +L  LV HY         D L T L  P 
Sbjct: 69  YFENLMQLVEHY-----TTDADGLCTRLIKPK 95

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 5/42 (11%)

Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFSS 380
             E   F ++++L+ +Y  ++       L TRL+ P     +
Sbjct: 64  IDEEVYFENLMQLVEHYTTDADG-----LCTRLIKPKVMEGT 100

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (217), Expect = 1e-21
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 12/108 (11%)

Query: 213 RDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF--H 268
           R   W+ G ISR++ +  +      DG FL+RD+ +    + LTL      K  +I    
Sbjct: 3   RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62

Query: 269 RNGRYGFS---EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
            +G+  FS      KF+ +++L+++Y+          L  +L +   R
Sbjct: 63  DDGQTFFSLDDGNTKFSDLIQLVDFYQLNKGV-----LPCKLKHHCIR 105

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (181), Expect = 9e-17
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 13/98 (13%)

Query: 424 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG----FG 475
           R+SR ++  ++   G  DG FL+R S +    + L++      K+  +   E      F 
Sbjct: 11  RISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFS 70

Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
             +    +  L  LV  Y       +   L   L +  
Sbjct: 71  LDDGNTKFSDLIQLVDFYQ-----LNKGVLPCKLKHHC 103

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (211), Expect = 6e-21
 Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 23/114 (20%)

Query: 217 WYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFS 276
           WYWG +SR +    L     G FLVRD+ST  G+Y L++ +        I     R    
Sbjct: 2   WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 61

Query: 277 EPF-----------------KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
                               +F S+  L+ +YK   L        T L+ PVSR
Sbjct: 62  PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT------TTLIEPVSR 109

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (181), Expect = 9e-17
 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 25/113 (22%)

Query: 420 TWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF 476
           +W   R+SR +A ALL G+  G FL+R S+T  G Y LS+  +    H ++  +      
Sbjct: 1   SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPV 60

Query: 477 AEPFNI----------------YPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
                                 + SL AL+  Y  + L+       TTL  PV
Sbjct: 61  PPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT------TTLIEPV 107

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.5 bits (211), Expect = 7e-21
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 6/104 (5%)

Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI-FHR 269
           SL    WY G +SR+     L+   +G+FLVR++ +  G+ +++LR  G     +I    
Sbjct: 1   SLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTAS 60

Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
           +G+   S   +F ++ EL++++   +       L T L YP  +
Sbjct: 61  DGKLYVSSESRFNTLAELVHHHSTVADG-----LITTLHYPAPK 99

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.1 bits (192), Expect = 3e-18
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
            +SR  AE LLS   +G+FL+R S +  GQ ++S+   G   H  +     G  +    +
Sbjct: 11  PVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSES 70

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + +L  LV H+         D L TTL YP 
Sbjct: 71  RFNTLAELVHHH-----STVADGLITTLHYPA 97

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 82.7 bits (204), Expect = 4e-20
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 212 LRDAEWYWGDISRDDVNDKLADTA---DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
           L D  W+ G +SR      +        G F++R + T+ GE  LT    G  K +++  
Sbjct: 2   LSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSL 61

Query: 269 RNGRYGFSEPFKFTSVVELINYYK 292
                   +   F SV +++ ++ 
Sbjct: 62  NGHGQCHVQHLWFQSVFDMLRHFH 85

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.1 bits (153), Expect = 3e-13
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 424 RMSRAQAEALLS---GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAE 478
            +SR +A  L+     R  G F+IR S T  G+  L+    G  KH  +     G    +
Sbjct: 11  TLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSLNGHGQCHVQ 70

Query: 479 PFNIYPSLGALVLHY 493
               + S+  ++ H+
Sbjct: 71  H-LWFQSVFDMLRHF 84

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (205), Expect = 4e-20
 Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 217 WYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF 275
           W++G I R    + L+    DG FL+R++ +  G+++L+++ G   +  K+        F
Sbjct: 5   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64

Query: 276 SEPFKFTSVVELINYYKHESLSQYN 300
               KF S+ EL++Y++  S+S+  
Sbjct: 65  LWVVKFNSLNELVDYHRSTSVSRNQ 89

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (172), Expect = 1e-15
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 424 RMSRAQAEALLS-GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
           ++ RA+AE +LS  R DG FLIR S +  G ++LS+      +H  V     G  F    
Sbjct: 9   KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 68

Query: 481 NIYPSLGALVLHYAANSLEEHN 502
             + SL  LV ++ + S+  + 
Sbjct: 69  K-FNSLNELVDYHRSTSVSRNQ 89

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.6 bits (209), Expect = 4e-20
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 16/144 (11%)

Query: 211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRD-TSTKNGEYTLTLRKGGTNKLIKIFHR 269
           +L +  +  G IS++     L+    GTFL+R   S+K G  T T  +   +   +I   
Sbjct: 3   ALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSV 62

Query: 270 NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP-------VSRFSSDVDADI 322
                  +     S  E+I  YK    +    +     LYP         ++      + 
Sbjct: 63  EPYT--KQQLNNMSFAEIIMGYKIMDATNILVS-PLVYLYPDIPKEEAFGKYCRPESQEH 119

Query: 323 HSNDVDKNPAPGVLRT---FSEPF 343
              + D   A   L+T      PF
Sbjct: 120 P--EADPGSAAPYLKTKFICVTPF 141

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.3 bits (133), Expect = 6e-10
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 14/82 (17%)

Query: 425 MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
           +S+ +  A+LS +P GTFL+R S +   G    + V         +          EP+ 
Sbjct: 14  ISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQS-------VEPYT 66

Query: 482 I----YPSLGALVLHYAANSLE 499
                  S   +++ Y      
Sbjct: 67  KQQLNNMSFAEIIMGYKIMDAT 88

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (204), Expect = 6e-20
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 212 LRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRN 270
           +     Y G ISR+     L  T  DG++L+RD+ +  G Y L +   G     ++    
Sbjct: 1   MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60

Query: 271 GRYGFSEPF------KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
                +E         F  +  LI+ ++          +   L YPV +
Sbjct: 61  TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQG-----IVIPLQYPVEK 104

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 1e-15
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 13/98 (13%)

Query: 424 RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
           ++SR   E LL     DG++L+R S +  G Y L ++  G      V +TE G   AE  
Sbjct: 10  KISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETA 69

Query: 481 -----NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
                  +  +  L+  +     ++ +  +   L YPV
Sbjct: 70  PGVHKRYFRKIKNLISAF-----QKPDQGIVIPLQYPV 102

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (204), Expect = 8e-20
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 12/110 (10%)

Query: 213 RDAEWYWGDISRDDVNDKLADTA--DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF--H 268
           R   W+ G ISR++    +      DG FLVR++      + L+L      K   I    
Sbjct: 8   RTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSE 67

Query: 269 RNGRYGFS---EPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFS 315
             GR  FS      +FT +++L+ +++          L   L +  +R +
Sbjct: 68  EEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGI-----LPCLLRHCCTRVA 112

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (174), Expect = 1e-15
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 13/98 (13%)

Query: 424 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG----FG 475
           R+SR +++ L+   G  DG FL+R S      + LS+      KH L+  +E      F 
Sbjct: 16  RISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFS 75

Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
             +    +  L  LV  +       +   L   L +  
Sbjct: 76  MDDGQTRFTDLLQLVEFHQ-----LNRGILPCLLRHCC 108

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 8e-05
 Identities = 6/40 (15%), Positives = 17/40 (42%), Gaps = 5/40 (12%)

Query: 340 SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSRFS 379
               +FT +++L+ +++          L   L +  +R +
Sbjct: 78  DGQTRFTDLLQLVEFHQLNRGI-----LPCLLRHCCTRVA 112

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.0 bits (202), Expect = 9e-20
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 8/101 (7%)

Query: 216 EWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NGR 272
            W++G ISR +   +L     A G FL+R +   + +Y L++R     +  KI+ R  GR
Sbjct: 3   PWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGR 62

Query: 273 YGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
              +E   F S+ EL+NY++ +SLS        RL  P  +
Sbjct: 63  LHLNEAVSFLSLPELVNYHRAQSLS-----HGLRLAAPCRK 98

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (176), Expect = 4e-16
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 424 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 479
            +SR++A   L   G   G FLIR S      Y LS+  + A +H  ++    G      
Sbjct: 8   CISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNE 67

Query: 480 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
              + SL  LV ++        +      LA P 
Sbjct: 68  AVSFLSLPELVNYH-----RAQSLSHGLRLAAPC 96

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
            +E   F S+ EL+NY++ +SLS        RL  P  +
Sbjct: 65  LNEAVSFLSLPELVNYHRAQSLS-----HGLRLAAPCRK 98

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (206), Expect = 9e-20
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 4/113 (3%)

Query: 207 PETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
            E         + G ISR+  ++ L    +G +++R++  + G YTL LR G      ++
Sbjct: 27  VENRPKYYGREFHGIISREQADELLGG-VEGAYILRESQRQPGCYTLALRFGNQTLNYRL 85

Query: 267 FHRNGRYGFSEPFK-FTSVVE--LINYYKHESLSQYNSTLDTRLLYPVSRFSS 316
           FH    +   + F+    +V   LI  Y     ++Y S + T  +Y    +++
Sbjct: 86  FHDGKHFVGEKRFESIHDLVTDGLITLYIETKAAEYISKMTTNPIYEHIGYAT 138

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (185), Expect = 7e-17
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 481
            +SR QA+ LL G  +G +++R S    G Y L++       +  ++   + F   + F 
Sbjct: 41  IISREQADELLGG-VEGAYILRESQRQPGCYTLALRFGNQTLNYRLFHDGKHFVGEKRFE 99

Query: 482 IYPSL--GALVLHYAANSLEEHNDDLKTTLAYPVF 514
               L    L+  Y      E+   + T   Y   
Sbjct: 100 SIHDLVTDGLITLYIETKAAEYISKMTTNPIYEHI 134

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (202), Expect = 1e-19
 Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 12/107 (11%)

Query: 217 WYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGT----------NKLIK 265
           W+ G +S  +    L +    G+FLVR++ +  G++ L++R G               + 
Sbjct: 2   WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVM 61

Query: 266 IFHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 312
           I  +  +Y      +F S+ +L+ +YK   + +       +L  P++
Sbjct: 62  IRCQELKYDVGGGERFDSLTDLVEHYKKNPMVE-TLGTVLQLKQPLN 107

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 2e-13
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 15/103 (14%)

Query: 424 RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAP----------KHCLVYET 470
            +S  +AE LL+ +   G+FL+R S +  G + LS+                 H ++   
Sbjct: 6   HLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQ 65

Query: 471 ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
           E  +        + SL  LV HY  N + E        L  P+
Sbjct: 66  ELKYDVGGG-ERFDSLTDLVEHYKKNPMVE-TLGTVLQLKQPL 106

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVS 376
                +F S+ +L+ +YK   + +       +L  P++
Sbjct: 71  VGGGERFDSLTDLVEHYKKNPMVE-TLGTVLQLKQPLN 107

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (201), Expect = 1e-19
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 13/108 (12%)

Query: 212 LRDAEWYWGDISRDDVNDKLA--DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH- 268
           L    W++ ++SR D   +L       G+FL+R++ +  G ++L++R    N+   + H 
Sbjct: 1   LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 60

Query: 269 -----RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
                 NG +  S    F  + EL+ +Y + S       L TRL  P 
Sbjct: 61  KIRNLDNGGFYISPRITFPGLHELVRHYTNASDG-----LCTRLSRPC 103

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 1e-15
 Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 14/99 (14%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 474
            +SR  AE  L   G   G+FLIR S +  G ++LS+           KH  +   + G 
Sbjct: 10  NLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGG 69

Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            +  P   +P L  LV HY        +D L T L+ P 
Sbjct: 70  FYISPRITFPGLHELVRHY-----TNASDGLCTRLSRPC 103

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.7 bits (201), Expect = 1e-19
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 13/109 (11%)

Query: 211 SLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
           S++  EWY+G I+R +    L  A+   GTFLVR++ T  G Y L++      K + + H
Sbjct: 1   SIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKH 60

Query: 269 ------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
                  +G +  +   +F S+ +L+ YY   +       L  RL    
Sbjct: 61  YKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADG-----LCHRLTTVC 104

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.9 bits (168), Expect = 4e-15
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 14/99 (14%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCS-----GAPKHCLVYETERGF 474
           +++R ++E LL  +  P GTFL+R S T  G Y LS+           KH  + + + G 
Sbjct: 11  KITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGG 70

Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            +      + SL  LV +Y      +H D L   L    
Sbjct: 71  FYITSRTQFNSLQQLVAYY-----SKHADGLCHRLTTVC 104

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 2e-19
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 13/104 (12%)

Query: 216 EWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH----- 268
           EW++  ISR D   +L       G+F++RD+ T  G Y+L++R     +   + H     
Sbjct: 2   EWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRT 61

Query: 269 -RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
             NG +  S    F+++ EL+++YK  +       L  +L  P 
Sbjct: 62  LDNGGFYISPRSTFSTLQELVDHYKKGNDG-----LCQKLSVPC 100

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (167), Expect = 5e-15
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 14/99 (14%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 474
            +SR  AE  L   G   G+F+IR S T  G Y+LS+           KH  +   + G 
Sbjct: 7   GISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGG 66

Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            +  P + + +L  LV HY     ++ ND L   L+ P 
Sbjct: 67  FYISPRSTFSTLQELVDHY-----KKGNDGLCQKLSVPC 100

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 3e-19
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 216 EWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRY-G 274
           EW+ G ISR+D  + L     G+FL+R + +  G       +      +     +G +  
Sbjct: 10  EWFHGAISREDAENLLESQPLGSFLIRVSHSHVGYTLSYKAQSSCCHFMVKLLDDGTFMI 69

Query: 275 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
             E    TS+  L+ +++ + +          L  P  +
Sbjct: 70  PGEKVAHTSLDALVTFHQQKPIEPRR----ELLTQPCRQ 104

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (168), Expect = 5e-15
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRP-STTGQYALSIVCSGAPKHCLVYETERG-FGFAEPFN 481
            +SR  AE LL  +P G+FLIR   +   Y LS     +  H +V   + G F       
Sbjct: 15  AISREDAENLLESQPLGSFLIRVSHSHVGYTLSYKAQSSCCHFMVKLLDDGTFMIPGEKV 74

Query: 482 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
            + SL ALV  +    +    +  +  L  P 
Sbjct: 75  AHTSLDALVTFHQQKPI----EPRRELLTQPC 102

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 4/44 (9%)

Query: 334 GVLRTFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
           G      E    TS+  L+ +++ + +          L  P  +
Sbjct: 65  GTFMIPGEKVAHTSLDALVTFHQQKPIEPRR----ELLTQPCRQ 104

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 3e-19
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 210 NSLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF 267
           +S++  EWY+G + R D   +L       GTFL+R++ T  G Y+L++R     K   + 
Sbjct: 1   DSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVK 60

Query: 268 H------RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
           H       NG Y  +   +F ++ +L+ +Y   +       L +RL+ P
Sbjct: 61  HYKIRKLDNGGYYITTRAQFETLQQLVQHYSERAAG-----LSSRLVVP 104

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (165), Expect = 1e-14
 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCS-----GAPKHCLVYETERGF 474
           ++ R  AE  L   G P GTFLIR S T  G Y+LSI           KH  + + + G 
Sbjct: 12  KLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGG 71

Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
            +      + +L  LV HY      E    L + L  P
Sbjct: 72  YYITTRAQFETLQQLVQHY-----SERAAGLSSRLVVP 104

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.8 bits (199), Expect = 3e-19
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 210 NSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
                 EWY   ++R      L     DG FLVR    +   Y ++ R  G  K  ++  
Sbjct: 4   GIHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRK-RNEPNSYAISFRAEGKIKHCRVQQ 62

Query: 269 RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
                      +F S+V+LI+YY+   L         +L YP++ 
Sbjct: 63  EGQTVMLGNS-EFDSLVDLISYYEKHPLY-----RKMKLRYPINE 101

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (157), Expect = 1e-13
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 418 EKTWLV-RMSRAQAEALLSGRP-DGTFLIRPSTTGQ-YALSIVCSGAPKHCLVYETERGF 474
            K W    ++RAQAE +L   P DG FL+R       YA+S    G  KHC V +  +  
Sbjct: 8   SKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQEGQTV 67

Query: 475 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
                   + SL  L+ +Y  + L       K  L YP+
Sbjct: 68  MLGNSE--FDSLVDLISYYEKHPLY-----RKMKLRYPI 99

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (200), Expect = 4e-19
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 8/107 (7%)

Query: 210 NSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI- 266
           +      +++G ISR +  + L  A  ADG FL+R      G Y L+L          I 
Sbjct: 1   DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIE 60

Query: 267 FHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
              NG Y  +         EL  +Y  +        L   L  P +R
Sbjct: 61  RQLNGTYAIAGGKAHCGPAELCEFYSRDPDG-----LPCNLRKPCNR 102

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (174), Expect = 2e-15
 Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 479
            +SRA+AE  L  +G  DG FL+R      G Y LS+V      H  +     G      
Sbjct: 12  SISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAG 71

Query: 480 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
              +     L   Y         D L   L  P 
Sbjct: 72  GKAHCGPAELCEFY-----SRDPDGLPCNLRKPC 100

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 5/39 (12%)

Query: 339 FSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 377
            +         EL  +Y  +        L   L  P +R
Sbjct: 69  IAGGKAHCGPAELCEFYSRDPDG-----LPCNLRKPCNR 102

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.4 bits (195), Expect = 1e-18
 Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 16/112 (14%)

Query: 210 NSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLR---KGGTNKLIK 265
           N+L   EWY   ISRD     L DT  +G F+VRD+ T  G YT+++        N  IK
Sbjct: 1   NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCIK 59

Query: 266 IFHR------NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 311
            +H         RY  +E + F S+  LI Y+++         L TRL YPV
Sbjct: 60  HYHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGG-----LVTRLRYPV 106

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 15/100 (15%)

Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIVCSGAP------KHCLVYETERGFG 475
            +SR +AE LL     +G F++R S T G Y +S+            KH  + ET     
Sbjct: 12  SISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKHYHIKETNDSPK 71

Query: 476 FAEPFN--IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
                   ++ S+  L+ ++     + +   L T L YPV
Sbjct: 72  RYYVAEKYVFDSIPLLIQYH-----QYNGGGLVTRLRYPV 106

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)

Query: 340 SEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPV 375
           +E + F S+  LI Y+++         L TRL YPV
Sbjct: 76  AEKYVFDSIPLLIQYHQYNGGG-----LVTRLRYPV 106

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.3 bits (195), Expect = 1e-18
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 15/125 (12%)

Query: 196 SSLDVAKMSSGPE------TNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTK 247
            +L+ A +S  P+      T +     WY   ++R++   KL      DG FL+R    +
Sbjct: 4   EALEQAIISQAPQVEKLIATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRP-RKE 62

Query: 248 NGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTR 306
            G Y L+L  G T     I   + G+Y   E  KF ++ +L+ Y K ++       L   
Sbjct: 63  QGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKADG-----LIYC 117

Query: 307 LLYPV 311
           L    
Sbjct: 118 LKEAC 122

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (181), Expect = 1e-16
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
            ++R +AE  L    + DG FL+RP    G YALS++      H L+ + + G       
Sbjct: 35  SLTREEAERKLYSGAQTDGKFLLRPRKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEG 94

Query: 481 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
             + +L  LV +      +   D L   L    
Sbjct: 95  TKFDTLWQLVEYL-----KLKADGLIYCLKEAC 122

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (192), Expect = 2e-18
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 12/107 (11%)

Query: 214 DAEWYWGDISRDDVNDKLA-DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF-HRNG 271
           D  +Y G +++ +    L     DG FL+RD+ +  G   L +         +IF  ++G
Sbjct: 2   DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHG 61

Query: 272 RY-----GFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
            Y       +    F ++ EL++ Y           L   L  P+ R
Sbjct: 62  YYRIETDAHTPRTIFPNLQELVSKYGKPGQG-----LVVHLSNPIMR 103

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (172), Expect = 1e-15
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 424 RMSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 475
            +++ + EALL  G  DG FLIR S +  G   L +          ++  + G+      
Sbjct: 9   CLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETD 68

Query: 476 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
              P  I+P+L  LV  Y      +    L   L+ P+
Sbjct: 69  AHTPRTIFPNLQELVSKY-----GKPGQGLVVHLSNPI 101

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 129

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (189), Expect = 1e-17
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 211 SLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH 268
           S     +++G+I+R++  D L     +DG +L+R +    G + L++  G       I  
Sbjct: 1   SANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIER 60

Query: 269 R-NGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
             NG Y  +      S  +L +Y+  ES       L   L  P +R
Sbjct: 61  ELNGTYAIAGGRTHASPADLCHYHSQESDG-----LVCLLKKPFNR 101

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 129

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (173), Expect = 2e-15
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 9/94 (9%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 479
            ++R +AE  L   G  DG +L+R S    G +ALS+       H  +     G      
Sbjct: 11  NITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAG 70

Query: 480 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
              + S   L  ++      + +D L   L  P 
Sbjct: 71  GRTHASPADLCHYH-----SQESDGLVCLLKKPF 99

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.3 bits (187), Expect = 2e-17
 Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 208 ETNSLRDAEWYWGDISRDDVNDKLADTA--DGTFLVRDTSTKNGEYTLTLR-KGGTNKLI 264
              +L   +W++  ISR D   +L       G+FL+R++ +  G ++L+++      +++
Sbjct: 5   PVETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVV 64

Query: 265 KIF----HRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYP 310
           K +      NG Y  S    F ++  L+ +Y  +        L  +L  P
Sbjct: 65  KHYKIRSLDNGGYYISPRITFPTLQALVQHYSKKGDG-----LCQKLTLP 109

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.7 bits (157), Expect = 2e-13
 Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 16/116 (13%)

Query: 406 GAVASTVDFESGEKTWLV-RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCS- 459
           G+VA     E  +  W    +SR  AE  L       G+FLIR S +  G ++LS+    
Sbjct: 1   GSVAPVETLEVEK--WFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDIT 58

Query: 460 ---GAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 512
                 KH  +   + G  +  P   +P+L ALV HY      +  D L   L  P
Sbjct: 59  TQGEVVKHYKIRSLDNGGYYISPRITFPTLQALVQHY-----SKKGDGLCQKLTLP 109

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.6 bits (180), Expect = 2e-16
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 9/108 (8%)

Query: 209 TNSLRDAEWYWGDISRDDVNDKL--ADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKI 266
           T +     W+ G ISR++    +      +G FL+R     NG Y L L   G     +I
Sbjct: 23  TTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRA-RDNNGSYALCLLHEGKVLHYRI 81

Query: 267 -FHRNGRYGFSEPFKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR 313
              + G+    E  KF ++ +L+ +Y +++       L   L  P  +
Sbjct: 82  DKDKTGKLSIPEGKKFDTLWQLVEHYSYKADG-----LLRVLTVPCQK 124

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 2e-15
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 8/93 (8%)

Query: 424 RMSRAQAEALL--SGRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPF 480
           ++SR ++E ++    + +G FLIR     G YAL ++  G   H  + + + G       
Sbjct: 35  KISREESEQIVLIGSKTNGKFLIRARDNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEG 94

Query: 481 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 513
             + +L  LV HY         D L   L  P 
Sbjct: 95  KKFDTLWQLVEHY-----SYKADGLLRVLTVPC 122

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]} Length = 131

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 61.9 bits (150), Expect = 2e-12
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIF-- 267
           ++L      +G + R +VND L +   GTF++R +    G++ +          IK +  
Sbjct: 4   STLWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLV 63

Query: 268 -HRNGRYGF-SEPFKFTSVVELINYYKHES 295
              +      + P   +   + +N  +   
Sbjct: 64  QPNDTAAAKKTFPDFLSEHSQFVNLLQWTK 93

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]} Length = 131

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 59.2 bits (143), Expect = 2e-11
 Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 5/82 (6%)

Query: 424 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVC---SGAPKHCLVYETERGFGFAE 478
            M R +    L  +  GTF+IR S    GQ+ ++ +        KH LV   +       
Sbjct: 15  YMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDTAAAKKT 74

Query: 479 PFNIYPSLGALVLHYAANSLEE 500
             +        V          
Sbjct: 75  FPDFLSEHSQFVNLLQWTKDTN 96

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 3e-10
 Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 9/140 (6%)

Query: 40  GLSAANLF-EPGNASQVAEL---FHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLI 95
           GL +  L+   G    + ++   F     +         +  ++   LK Y + L  P+I
Sbjct: 33  GLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVI 92

Query: 96  PYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVRE 155
            Y  Y KF+     SN       +  ++   P  H+  LRYLM HL ++      +    
Sbjct: 93  TYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVT--MNEKDNFM 150

Query: 156 PPTILIQSFTFVLPTFSSPP 175
               L   F    PT   PP
Sbjct: 151 NAENLGIVFG---PTLMRPP 167

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 7e-10
 Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 8/140 (5%)

Query: 40  GLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYVY 99
           GL  + L+   ++S +AEL      +  S +   ++  +LA   K YL  L  P+IP   
Sbjct: 29  GLECSTLYRTQSSSNLAELRQLLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAV 88

Query: 100 YEKFVSL---LSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREP 156
           Y + +SL   +  S +     +        P  ++  L+YL+ H  ++   Q +      
Sbjct: 89  YSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLS--QTSSKNLLN 146

Query: 157 PTILIQSFTFVLPTFSSPPA 176
             +L + F+   P      A
Sbjct: 147 ARVLSEIFS---PMLFRFSA 163

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 8e-10
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 7/137 (5%)

Query: 40  GLSAANLF-EPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLIPYV 98
            L+   +F    N   V E+   Y+  +           L A++LKT+L+ L EPL+ + 
Sbjct: 39  ALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFD 98

Query: 99  YYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPT 158
            Y   V  L+    + +      ++Q  P  ++  LR+L A L ++    ++   +   T
Sbjct: 99  LYPHVVGFLNIDESQRV-PATLQVLQTLPEENYQVLRFLTAFLVQIS--AHSDQNKMTNT 155

Query: 159 ILIQSFTFVLPTFSSPP 175
            L   F    P      
Sbjct: 156 NLAVVFG---PNLLWAK 169

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.6 bits (128), Expect = 6e-09
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 40  GLSAANLF-EPGNASQVAELFHAY-----SGEIKSYNFSKLEPALLAIMLKTYLKSLTEP 93
           G++   L+   G  S+V +L         + E ++   ++ E   +   LKTYL+ L  P
Sbjct: 22  GINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGP 81

Query: 94  LIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMC 145
           L+ Y +   F+      N     S + +LV   P  +   L  LM HLA++ 
Sbjct: 82  LMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVA 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	523
d1xa6a1	196	Beta-chimaerin, C-terminal domain {Human (Homo sap	99.96
d1pbwa_	184	p85 alpha subunit RhoGAP domain {Human (Homo sapie	99.96
d1f7ca_	191	Graf {Chicken (Gallus gallus) [TaxId: 9031]}	99.94
d1tx4a_	196	p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96	99.93
d1jwoa_	97	Csk homologous kinase Chk {Human (Homo sapiens) [T	99.93
d1k9aa2	101	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.92
d1opka2	101	Abl tyrosine kinase {Mouse (Mus musculus) [TaxId:	99.92
d1rjaa_	100	Tyrosine-protein kinase 6 (Breast tumor kinase, Br	99.92
d1a81a1	129	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.91
d1opka2	101	Abl tyrosine kinase {Mouse (Mus musculus) [TaxId:	99.9
d2oq1a1	130	Tyrosine-protein kinase zap-70 {Human (Homo sapien	99.9
d1mila_	104	Shc adaptor protein {Human (Homo sapiens) [TaxId:	99.9
d1jwoa_	97	Csk homologous kinase Chk {Human (Homo sapiens) [T	99.9
d2shpa2	109	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.9
d1k9aa2	101	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.9
d1lkka_	105	p56-lck tyrosine kinase {Human (Homo sapiens) [Tax	99.9
d1rjaa_	100	Tyrosine-protein kinase 6 (Breast tumor kinase, Br	99.9
d1a81a1	129	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.9
d1nrva_	105	Growth factor receptor-bound protein 10, GRB10 {Hu	99.9
d1i3za_	103	Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus	99.9
d1a81a2	125	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.89
d1a81a2	125	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.89
d1blja_	114	P55 Blk protein tyrosine kinase {Mouse (Mus muscul	99.89
d1qada_	107	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.89
d2oq1a2	124	Tyrosine-protein kinase zap-70 {Human (Homo sapien	99.89
d2oq1a2	124	Tyrosine-protein kinase zap-70 {Human (Homo sapien	99.89
d1o48a_	106	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.89
d2oq1a1	130	Tyrosine-protein kinase zap-70 {Human (Homo sapien	99.89
d1nrva_	105	Growth factor receptor-bound protein 10, GRB10 {Hu	99.89
d1d4ta_	104	The Xlp protein Sap {Human (Homo sapiens) [TaxId:	99.89
d1lkka_	105	p56-lck tyrosine kinase {Human (Homo sapiens) [Tax	99.88
d2fcia1	105	Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId:	99.88
d1qada_	107	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.88
d1g83a2	104	Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId:	99.88
d1qcfa2	103	Hemopoetic cell kinase Hck {Human (Homo sapiens) [	99.88
d2izva2	112	Suppressor of cytokine signaling 4, SOCS-4 {Human	99.88
d1fu6a_	111	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.88
d2qmsa1	113	Growth factor receptor-bound protein 7 {Human (Hom	99.88
d2fcia1	105	Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId:	99.88
d1r1qa_	97	GRB2-related adaptor protein 2 (MONA, GRID) {Mouse	99.87
d2shpa2	109	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.87
d1blja_	114	P55 Blk protein tyrosine kinase {Mouse (Mus muscul	99.87
d1jyra_	96	Growth factor receptor-bound protein 2 (GRB2) {Hum	99.87
d1qcfa2	103	Hemopoetic cell kinase Hck {Human (Homo sapiens) [	99.87
d1o48a_	106	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.87
d1i3za_	103	Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus	99.87
d2qmsa1	113	Growth factor receptor-bound protein 7 {Human (Hom	99.87
d1luia_	108	Itk/tsk protein tyrosine kinase {Mouse (Mus muscul	99.87
d1d4ta_	104	The Xlp protein Sap {Human (Homo sapiens) [TaxId:	99.87
d1mila_	104	Shc adaptor protein {Human (Homo sapiens) [TaxId:	99.86
d2cs0a1	106	Hematopoietic SH2 domain containing protein HSH2D	99.86
d1g83a2	104	Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId:	99.85
d1luia_	108	Itk/tsk protein tyrosine kinase {Mouse (Mus muscul	99.85
d2shpa3	108	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.85
d2eyva1	109	Crk proto-oncogen {Human (Homo sapiens) [TaxId: 96	99.85
d1r1qa_	97	GRB2-related adaptor protein 2 (MONA, GRID) {Mouse	99.84
d1rpya_	86	Adaptor protein Aps {Rat (Rattus norvegicus) [TaxI	99.84
d1fu6a_	111	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.83
d2c9wa2	103	Suppressor of cytokine signaling 2, SOCS-2 {Human	99.83
d2cs0a1	106	Hematopoietic SH2 domain containing protein HSH2D	99.83
d1jyra_	96	Growth factor receptor-bound protein 2 (GRB2) {Hum	99.83
d2izva2	112	Suppressor of cytokine signaling 4, SOCS-4 {Human	99.82
d2shpa3	108	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.79
d2eyva1	109	Crk proto-oncogen {Human (Homo sapiens) [TaxId: 96	99.79
d2c9wa2	103	Suppressor of cytokine signaling 2, SOCS-2 {Human	99.76
d1rpya_	86	Adaptor protein Aps {Rat (Rattus norvegicus) [TaxI	99.75
d1xa6a2	141	Beta-chimaerin, N-terminal domain {Human (Homo sap	99.72
d1xa6a2	141	Beta-chimaerin, N-terminal domain {Human (Homo sap	99.64
d1uura3	131	STAT homologue {Dictyostelium discoideum [TaxId: 4	99.35
d1bg1a3	141	STAT3b {Mouse (Mus musculus) [TaxId: 10090]}	99.28
d1uura3	131	STAT homologue {Dictyostelium discoideum [TaxId: 4	99.08
d1bg1a3	141	STAT3b {Mouse (Mus musculus) [TaxId: 10090]}	98.9
d1bf5a3	142	STAT-1 {Human (Homo sapiens) [TaxId: 9606]}	97.33
d1bf5a3	142	STAT-1 {Human (Homo sapiens) [TaxId: 9606]}	95.86
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	93.14
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	91.25
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	91.15
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	91.08
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	90.86
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	90.6
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	90.09
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	89.45
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	88.3
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	87.8
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	86.11
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	85.9
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	85.88
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	85.88
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	85.65
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	85.64
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	85.45
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	85.22
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	84.59
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	83.76
d3buxb3	88	Cbl {Human (Homo sapiens) [TaxId: 9606]}	83.62
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	83.0
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	82.35
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	81.35
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	80.59
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	80.15

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-30  Score=240.40  Aligned_cols=159  Identities=23%  Similarity=0.309  Sum_probs=141.5

Q ss_pred             CCCcccccCCCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCC---CCCHHHHHH
Q psy8552           6 PNLLNKTDNVSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFS---KLEPALLAI   81 (523)
Q Consensus         6 p~~L~~~~~~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~---~~d~~~va~   81 (523)
                      +-+|...+.+++..||.+|.+|++||+++     |+++|||||++|+ .++++|++.||++....+++   ..|+|+||+
T Consensus         4 g~~L~~~~~~~~~~iP~iv~~~i~~l~~~-----gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~d~~~va~   78 (196)
T d1xa6a1           4 CCDLTTLVKAHNTQRPMVVDICIREIEAR-----GLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITG   78 (196)
T ss_dssp             TSCHHHHHHHHTCSSCHHHHHHHHHHHHS-----CSSSTTTTTSCCCHHHHHHHHHHHSSTTTTSCCCSSSSCCTHHHHH
T ss_pred             CCCHHHHHHhcCCCCChHHHHHHHHHHHh-----CCCCCCeeeeCCCHHHHHHHHHHHhcCCCccccccccccchhHHHH
Confidence            45788888888999999999999999999     8999999999955 99999999999865444443   358999999


Q ss_pred             HHHHHHhhcCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchh
Q psy8552          82 MLKTYLKSLTEPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILI  161 (523)
Q Consensus        82 lLK~flr~LpePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~  161 (523)
                      +||.|||+||+||+|.++|+.|+.+.+..+.++++.+++.++..||+.|+.+|.||+.||.+|+++++.|+|+..  ++|
T Consensus        79 ~lK~fLr~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~--nLA  156 (196)
T d1xa6a1          79 ALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAE--NLG  156 (196)
T ss_dssp             HHHHHHHHCSSCTTCSTTHHHHHTTTTCCCHHHHHHHHHHHHTTSCHHHHHHHHHTTTTTHHHHTTTTTSCCCHH--HHH
T ss_pred             HHHHHHHhCCCccCCHHHHHHHHHHHhccchhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhhccchh--hhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999988877655  777


Q ss_pred             hhhccccccCCCC
Q psy8552         162 QSFTFVLPTFSSP  174 (523)
Q Consensus       162 ~~~~~v~P~~~~p  174 (523)
                      .+||   |++..+
T Consensus       157 ~~f~---P~l~~~  166 (196)
T d1xa6a1         157 IVFG---PTLMRP  166 (196)
T ss_dssp             HHHT---TTSCCC
T ss_pred             HHhc---cccccC
Confidence            7776   555554

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-30  Score=237.58  Aligned_cols=149  Identities=23%  Similarity=0.351  Sum_probs=133.6

Q ss_pred             CCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCChhHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC
Q psy8552          16 SSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNASQVAELFHAYSGEIKSYNFSKLEPALLAIMLKTYLKSLTEPLI   95 (523)
Q Consensus        16 ~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~~~v~~l~~~~~~~~~~~~~~~~d~~~va~lLK~flr~LpePli   95 (523)
                      .++.||.+|.+||++|+++     |+++|||||++|+++++++++.++++....+++.+|+|+||++||.|||+||+|||
T Consensus        10 ~~~~vP~~l~~~i~~ie~~-----gl~~eGIFR~~g~~~i~~l~~~~~~~~~~~~~~~~~~~~va~lLK~flreLp~pli   84 (184)
T d1pbwa_          10 PPDIAPPLLIKLVEAIEKK-----GLECSTLYRTQSSSNLAELRQLLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVI   84 (184)
T ss_dssp             TTSCSCHHHHHHHHHHHHH-----HTTCTTTTSSCCSCCTTHHHHHSCSSSSCCCGGGBCHHHHHHHHHHHHHTSSSCSS
T ss_pred             CCCCCCHHHHHHHHHHHHh-----CCCCCCeeeCCchHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHHhCCCccc
Confidence            4567999999999999999     89999999999777799999999998766778899999999999999999999999


Q ss_pred             ChhhHHHHHHHhc-CCChHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccccccCC
Q psy8552          96 PYVYYEKFVSLLS-GSNDRHIGSRLFALVQ--DFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTFS  172 (523)
Q Consensus        96 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~--~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~~~  172 (523)
                      |+++|+.|+.+.. ..+.+++++.++.++.  +||..|+.+|+||+.||.+|+.+++.|+|+..  ++|.+||   |++.
T Consensus        85 p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LP~~n~~~L~~L~~~l~~v~~~~~~NkM~~~--nLA~~f~---P~l~  159 (184)
T d1pbwa_          85 PAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNAR--VLSEIFS---PMLF  159 (184)
T ss_dssp             CHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH--HHHHHHH---HHHH
T ss_pred             cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhhcccHh--HHHHHhc---chhc
Confidence            9999999999765 7788889999999996  69999999999999999999999999987766  7777887   5555


Q ss_pred             CC
Q psy8552         173 SP  174 (523)
Q Consensus       173 ~p  174 (523)
                      ++
T Consensus       160 ~~  161 (184)
T d1pbwa_         160 RF  161 (184)
T ss_dssp             TC
T ss_pred             CC
Confidence            44

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=7e-28  Score=222.69  Aligned_cols=147  Identities=23%  Similarity=0.282  Sum_probs=129.0

Q ss_pred             CCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCC-----CCCCCCHHHHHHHHHHHHhhcC
Q psy8552          18 TTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSY-----NFSKLEPALLAIMLKTYLKSLT   91 (523)
Q Consensus        18 ~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~-----~~~~~d~~~va~lLK~flr~Lp   91 (523)
                      ..+|.+|.+|++||+++     |+++|||||++|+ .+++++++.++.+....     ...++|+|+||++||.|||+||
T Consensus         5 ~~~~~iv~~ci~~l~~~-----gl~~eGIFR~~G~~~~v~~l~~~~~~~~~~~~~~~~~~~~~dv~~va~~lK~~lreLp   79 (191)
T d1f7ca_           5 SIGFSIIKKCIHAVETR-----GINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLP   79 (191)
T ss_dssp             HHHHHHHHHHHHHHHHH-----CTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSS
T ss_pred             ccccHHHHHHHHHHHHh-----CCCCCCeeeCCCCHHHHHHHHHHHhCcCcccccccccccccCHHHHHHHHHHHHHhCC
Confidence            34688999999999999     8999999999955 99999999999876422     2346799999999999999999


Q ss_pred             CCCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhccccccC
Q psy8552          92 EPLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFTFVLPTF  171 (523)
Q Consensus        92 ePli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~~v~P~~  171 (523)
                      +||+|.++|+.|+.+.+..+.++++.+++.++.+||+.|+.+|+||+.||++|++++..|+|+..  ++|.+|+   |++
T Consensus        80 ~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~~~~~L~~l~~~l~~v~~~~~~NkM~~~--nLA~~f~---P~l  154 (191)
T d1f7ca_          80 GPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVA--NLGVVFG---PTL  154 (191)
T ss_dssp             SCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH--HHHHHHH---HHH
T ss_pred             CCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccCcHH--HHHHHhh---chh
Confidence            99999999999999999999999999999999999999999999999999999999999987654  7788886   444


Q ss_pred             CCC
Q psy8552         172 SSP  174 (523)
Q Consensus       172 ~~p  174 (523)
                      .++
T Consensus       155 ~~~  157 (191)
T d1f7ca_         155 LRP  157 (191)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            443

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-26  Score=215.24  Aligned_cols=142  Identities=22%  Similarity=0.365  Sum_probs=127.1

Q ss_pred             CCCCCCCHHHHHHHHHHhccCCCCCCCccceEEecCCh-hHHHHHHHHHhCCCCCCCCCCC-CHHHHHHHHHHHHhhcCC
Q psy8552          15 VSSTTSPFKSDNLKAASEHYSKPDCGLSAANLFEPGNA-SQVAELFHAYSGEIKSYNFSKL-EPALLAIMLKTYLKSLTE   92 (523)
Q Consensus        15 ~~~~~vP~vv~~~i~~l~~~~~~~~Gl~~eGifR~~~~-~~v~~l~~~~~~~~~~~~~~~~-d~~~va~lLK~flr~Lpe   92 (523)
                      .....||.+|.+|++||+++     |+++|||||++|+ ++++++++.+|+|.. .++... |+|+||++||.|||+||+
T Consensus        19 ~~~~~vP~~l~~~~~~l~~~-----gl~~eGIFR~~g~~~~i~~l~~~~~~~~~-~~~~~~~~~~~va~~lK~fLr~Lp~   92 (196)
T d1tx4a_          19 PEQEPIPIVLRETVAYLQAH-----ALTTEGIFRRSANTQVVREVQQKYNMGLP-VDFDQYNALHLPAVILKTFLRELPE   92 (196)
T ss_dssp             TTCCSSCHHHHHHHHHHHHH-----CTTCTTTTTSCCCHHHHHHHHHHHHTTCC-CCGGGSSCTHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCChHHHHHHHHHHHc-----CCCCCCeeecCCcHHHHHHHHHHHhCCCC-ccccccccHHHHHHHHHHHHHhCCC
Confidence            34567999999999999999     8999999999955 999999999999875 455544 799999999999999999


Q ss_pred             CCCChhhHHHHHHHhcCCChHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccchhhhhc
Q psy8552          93 PLIPYVYYEKFVSLLSGSNDRHIGSRLFALVQDFPAHHFSALRYLMAHLARMCALQYARGVREPPTILIQSFT  165 (523)
Q Consensus        93 Pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~m~~~~~~l~~~~~  165 (523)
                      ||+|.++|+.|+.+.+. .+.+++.+++.++.+||+.|+.+|.+|+.||.+|+.+++.|+|+..  ++|.+|+
T Consensus        93 pLi~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~Lp~~~~~~L~~l~~~l~~i~~~~~~nkM~~~--nLa~~f~  162 (196)
T d1tx4a_          93 PLLTFDLYPHVVGFLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNT--NLAVVFG  162 (196)
T ss_dssp             CTTCGGGHHHHHTGGGS-CGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH--HHHHHHH
T ss_pred             CcchHHHHHHHHHHHhc-ChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHccCHH--HHHHHHh
Confidence            99999999999998875 4456888999999999999999999999999999999999988755  7888887

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.1e-26  Score=186.14  Aligned_cols=97  Identities=26%  Similarity=0.550  Sum_probs=90.6

Q ss_pred             CCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHHHH
Q psy8552         212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYY  291 (523)
Q Consensus       212 l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~y  291 (523)
                      |..+|||||.|+|++||++|++.++|+||||+|++.+|.|+|||+.+++++||+|...+|+|++.+...|+||.+||+||
T Consensus         1 ls~~PWy~g~isR~eAe~~L~~~~~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~LI~~y   80 (97)
T d1jwoa_           1 LSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEAVFFCNLMDMVEHY   80 (97)
T ss_dssp             CTTCTTEEESCCHHHHHHHTCSCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEESSSEESSTTSCCBSCHHHHHHHH
T ss_pred             CCcCCccCCCCCHHHHHHHhcCCCCCeEEEEecCCCCccEEEEEEecCceEEEEEEEcCCcEEecCCcccCCHHHHHHHH
Confidence            35689999999999999999998999999999998899999999999999999999888999998889999999999999


Q ss_pred             hhCCcccCCCCcceeecccccc
Q psy8552         292 KHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       292 ~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      +.++.     ++++.|+.||+|
T Consensus        81 ~~~~~-----~L~~~L~~P~~k   97 (97)
T d1jwoa_          81 SKDKG-----AICTKLVRPKRK   97 (97)
T ss_dssp             HHCCT-----TSSSCCCCBCCC
T ss_pred             hhCCC-----CCCccCCccCcC
Confidence            99874     789999999985

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-25  Score=184.96  Aligned_cols=97  Identities=26%  Similarity=0.465  Sum_probs=90.8

Q ss_pred             CCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHHHHh
Q psy8552         213 RDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYK  292 (523)
Q Consensus       213 ~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~y~  292 (523)
                      ..+|||||.|+|++||++|.+.++|+||||+|++.+|.|+||++.+++++||+|...+++|++.++..|+||.+||+||+
T Consensus         2 ~~~PWy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~LV~~y~   81 (101)
T d1k9aa2           2 SLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHYT   81 (101)
T ss_dssp             ESCTTBCTTCCHHHHHHHTCSCCTTEEEEEECSSSTTSEEEEEECSSSEEEEEEEEETTEEESSSSSCBSSHHHHHHHHH
T ss_pred             CcCCccCCCCCHHHHHHHHcCCCCCCEEEeccCCCCCCEEEEEEeCCccEEEEEEEcCCCceecCCcccCCHHHHHHHHh
Confidence            46899999999999999999989999999999988999999999999999999999999999988889999999999999


Q ss_pred             hCCcccCCCCcceeeccccccC
Q psy8552         293 HESLSQYNSTLDTRLLYPVSRF  314 (523)
Q Consensus       293 ~~~~~~~~~~l~~~L~~p~~~~  314 (523)
                      .++.     ++++.|+.||++.
T Consensus        82 ~~~~-----gl~~~L~~P~~~~   98 (101)
T d1k9aa2          82 TDAD-----GLCTRLIKPKVME   98 (101)
T ss_dssp             HCCT-----TSSSCCCEECCCT
T ss_pred             hCCC-----CCceeCCccccCC
Confidence            9874     7899999999874

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.6e-25  Score=184.23  Aligned_cols=99  Identities=28%  Similarity=0.480  Sum_probs=90.8

Q ss_pred             CCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHHHHH
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVELIN  289 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~LV~  289 (523)
                      +|+.++||||.|+|++||++|.+.++|+||||+|++.+|.|+||++.+++++||+|.. .+|.|++.+...|+||.+||+
T Consensus         1 sLe~~~Wy~g~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LI~   80 (101)
T d1opka2           1 SLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVH   80 (101)
T ss_dssp             SGGGSTTEEEECCHHHHHHHGGGCCTTEEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSTTSCBSSHHHHHH
T ss_pred             CcccCcccCCCCCHHHHHHHhcCCCCCeEEEEecCCCCCCEEEEEEcCcceEEEEeEECCCCCEEeCCCcccCCHHHHHH
Confidence            4678999999999999999999999999999999988999999999999999999987 467788888889999999999


Q ss_pred             HHhhCCcccCCCCcceeeccccccC
Q psy8552         290 YYKHESLSQYNSTLDTRLLYPVSRF  314 (523)
Q Consensus       290 ~y~~~~~~~~~~~l~~~L~~p~~~~  314 (523)
                      ||+.++.     ++.+.|+.||+++
T Consensus        81 ~y~~~~~-----~l~~~L~~P~pr~  100 (101)
T d1opka2          81 HHSTVAD-----GLITTLHYPAPKR  100 (101)
T ss_dssp             HHTTCCT-----TSSSCCCEECCCC
T ss_pred             HHhhCCC-----CCceECCCccCCC
Confidence            9998874     7899999999873

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.5e-25  Score=182.46  Aligned_cols=96  Identities=31%  Similarity=0.597  Sum_probs=87.7

Q ss_pred             CCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHHHHHH
Q psy8552         214 DAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVELINY  290 (523)
Q Consensus       214 ~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~LV~~  290 (523)
                      ++|||||.|+|++||++|+.  .++|+||||+|++.+|.|+|||+.+++++||+|.. .+|+|++.+...|+||.+||+|
T Consensus         1 sepWy~g~isR~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~   80 (100)
T d1rjaa_           1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNY   80 (100)
T ss_dssp             CCCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECSSSCEEEETTEEESSHHHHHHH
T ss_pred             CCCCcCCCCCHHHHHHHHhccCCCCCeEEeecCCCCCCCEEEEEEcCCCceEEEEEECCCCCEEecCCCccCCHHHHHHH
Confidence            47999999999999999974  48999999999988999999999999999999987 5678999888899999999999


Q ss_pred             HhhCCcccCCCCcceeeccccccC
Q psy8552         291 YKHESLSQYNSTLDTRLLYPVSRF  314 (523)
Q Consensus       291 y~~~~~~~~~~~l~~~L~~p~~~~  314 (523)
                      |+.+++     ++++.|+.||++.
T Consensus        81 y~~~~~-----~~~~~L~~Pc~~~   99 (100)
T d1rjaa_          81 HRAQSL-----SHGLRLAAPCRKH   99 (100)
T ss_dssp             HHHCCT-----TSSSCCCSBCCCC
T ss_pred             HhhCCC-----CCccCcCeecCCC
Confidence            999886     6789999999874

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.9e-25  Score=186.69  Aligned_cols=102  Identities=25%  Similarity=0.400  Sum_probs=91.2

Q ss_pred             CCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHHHH
Q psy8552         212 LRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVELI  288 (523)
Q Consensus       212 l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~LV  288 (523)
                      .+++|||||.|+|++||++|..  .++|+||||+|++.+|.|+|||+++++++||+|.+ .+|.|++.+...|+||.+||
T Consensus         2 ~~~~PWyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~i~~~~~F~sl~eLV   81 (129)
T d1a81a1           2 ANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADLC   81 (129)
T ss_dssp             TTSSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHH
T ss_pred             CCCCCcccCCCCHHHHHHHHHhcCCCCccEEEEccCCCCcceEEEeeecccceEEEEEEcCCCCeeecCCcccCCHHHHH
Confidence            4678999999999999999965  38899999999998999999999999999999987 46789998888999999999


Q ss_pred             HHHhhCCcccCCCCcceeeccccccCCCCc
Q psy8552         289 NYYKHESLSQYNSTLDTRLLYPVSRFSSDV  318 (523)
Q Consensus       289 ~~y~~~~~~~~~~~l~~~L~~p~~~~~~~~  318 (523)
                      +||+.++.     |++|.|+.||+++....
T Consensus        82 ~~Y~~~~~-----gl~~~L~~P~~~~~~~~  106 (129)
T d1a81a1          82 HYHSQESD-----GLVCLLKKPFNRPQGVQ  106 (129)
T ss_dssp             HHHTTCCT-----TSSSCCCEECCCCSSCC
T ss_pred             HHHhhCCC-----CCcccCCCCCCCCCCCC
Confidence            99998774     89999999998755543

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.8e-24  Score=177.99  Aligned_cols=96  Identities=31%  Similarity=0.444  Sum_probs=89.2

Q ss_pred             CCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHH
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  492 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~  492 (523)
                      ++.++||| .|+|++||.+|++.++|+||||.|+  +|.|+||++.+++|+||+|....+|.++......|+||.+||+|
T Consensus         2 Le~~~Wy~g~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LI~~   81 (101)
T d1opka2           2 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHH   81 (101)
T ss_dssp             GGGSTTEEEECCHHHHHHHGGGCCTTEEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSTTSCBSSHHHHHHH
T ss_pred             cccCcccCCCCCHHHHHHHhcCCCCCeEEEEecCCCCCCEEEEEEcCcceEEEEeEECCCCCEEeCCCcccCCHHHHHHH
Confidence            67889999 9999999999998899999999997  88999999999999999999998887777777889999999999


Q ss_pred             HhhCCccccCCccceeecccccCC
Q psy8552         493 YAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       493 y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      |+.++     +|+.++|+.||+++
T Consensus        82 y~~~~-----~~l~~~L~~P~pr~  100 (101)
T d1opka2          82 HSTVA-----DGLITTLHYPAPKR  100 (101)
T ss_dssp             HTTCC-----TTSSSCCCEECCCC
T ss_pred             HhhCC-----CCCceECCCccCCC
Confidence            99986     89999999999875

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.2e-24  Score=183.03  Aligned_cols=100  Identities=27%  Similarity=0.394  Sum_probs=90.1

Q ss_pred             CCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHHHH
Q psy8552         212 LRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVELI  288 (523)
Q Consensus       212 l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~LV  288 (523)
                      ...+|||||.|+|++||++|+.  .++|+||||+|++.+|.|+||++.+++++||+|.. .+|.|++.+...|+||.+||
T Consensus         3 ~~~~pWy~g~i~R~~Ae~~L~~~g~~~G~FLVR~S~~~~g~yvLSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~Lv   82 (130)
T d2oq1a1           3 AAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELC   82 (130)
T ss_dssp             TTTCTTBCBSCCHHHHHHHHHHTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHH
T ss_pred             ccCCCCccCCCCHHHHHHHHHhcCCCCceEEEEecCCCCccEEEEEeeCCceEEEEEEEcCCCceeccCCCCcCCHHHHH
Confidence            4567999999999999999974  48999999999998999999999999999999986 46789998878999999999


Q ss_pred             HHHhhCCcccCCCCcceeeccccccCCC
Q psy8552         289 NYYKHESLSQYNSTLDTRLLYPVSRFSS  316 (523)
Q Consensus       289 ~~y~~~~~~~~~~~l~~~L~~p~~~~~~  316 (523)
                      +||+.++.     ++++.|+.||++...
T Consensus        83 ~~Y~~~~~-----gL~~~L~~P~~r~~~  105 (130)
T d2oq1a1          83 EFYSRDPD-----GLPCNLRKPCNRPSG  105 (130)
T ss_dssp             HHHHHCCT-----TSSSCCCSBCCCCTT
T ss_pred             HHHhhCCC-----CCCccCCccCCCCCC
Confidence            99998874     899999999998544

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-24  Score=179.47  Aligned_cols=102  Identities=30%  Similarity=0.495  Sum_probs=91.2

Q ss_pred             CCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHH
Q psy8552         210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELIN  289 (523)
Q Consensus       210 ~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~  289 (523)
                      ..++.+|||||.|+|++||++|+.  +|+||||.|++.+|.|+||++.+++++||+|...+|.|.+. +..|+||.+||+
T Consensus         2 ~~l~~~pWyhG~i~R~~Ae~lL~~--~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~~~~~~~~~~-~~~F~sl~~LV~   78 (104)
T d1mila_           2 SQLRGEPWFHGKLSRREAEALLQL--NGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTK-DHRFESVSHLIS   78 (104)
T ss_dssp             CSTTTCTTBCSSCCHHHHHTTCCS--TTEEEEEECCSSCSSEEEEEEETTEEEEEEEBCTTSSEECS-SCEESSHHHHHH
T ss_pred             cccccCCCcCCCCCHHHHHHHHhc--CCcEEEEecCCCCCCEEEEEEEccccceEEEEeCCCEEEeC-CeeECCHHHHHH
Confidence            357899999999999999999975  99999999999899999999999999999998777788775 578999999999


Q ss_pred             HHhhCCcccCCCCcceeeccccccC
Q psy8552         290 YYKHESLSQYNSTLDTRLLYPVSRF  314 (523)
Q Consensus       290 ~y~~~~~~~~~~~l~~~L~~p~~~~  314 (523)
                      ||+.++++....++.+.|++|+.|.
T Consensus        79 ~y~~~~~~~~~~~~~~~L~~Pi~R~  103 (104)
T d1mila_          79 YHMDNHLPIISAGSELCLQQPVERK  103 (104)
T ss_dssp             HHHHHTCCEEETTEEECCCEECCCC
T ss_pred             HHhhCCCCcccCCcceEeCCCcCCc
Confidence            9999888766667788899999873

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.7e-24  Score=175.27  Aligned_cols=93  Identities=24%  Similarity=0.362  Sum_probs=84.3

Q ss_pred             CCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHH
Q psy8552         417 GEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY  493 (523)
Q Consensus       417 ~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y  493 (523)
                      ..+|||| .|+|++||++|++.+||+||||.|+  +|.|+|||+.+++++||+|...++++++. ....|+||.+||+||
T Consensus         2 s~~PWy~g~isR~eAe~~L~~~~~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~~~~~~~~~~-~~~~F~sl~~LI~~y   80 (97)
T d1jwoa_           2 SLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID-EAVFFCNLMDMVEHY   80 (97)
T ss_dssp             TTCTTEEESCCHHHHHHHTCSCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEESSSEESST-TSCCBSCHHHHHHHH
T ss_pred             CcCCccCCCCCHHHHHHHhcCCCCCeEEEEecCCCCccEEEEEEecCceEEEEEEEcCCcEEec-CCcccCCHHHHHHHH
Confidence            4579999 9999999999998889999999997  89999999999999999998877666554 457999999999999


Q ss_pred             hhCCccccCCccceeecccccC
Q psy8552         494 AANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       494 ~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      ++++     +|++++|++||+|
T Consensus        81 ~~~~-----~~L~~~L~~P~~k   97 (97)
T d1jwoa_          81 SKDK-----GAICTKLVRPKRK   97 (97)
T ss_dssp             HHCC-----TTSSSCCCCBCCC
T ss_pred             hhCC-----CCCCccCCccCcC
Confidence            9986     8999999999975

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.9e-24  Score=177.57  Aligned_cols=103  Identities=25%  Similarity=0.462  Sum_probs=91.0

Q ss_pred             CCCCccccCCCHHHHHHHhcCC-CCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHHHH
Q psy8552         213 RDAEWYWGDISRDDVNDKLADT-ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYY  291 (523)
Q Consensus       213 ~~~~wyhg~isr~~Ae~lL~~~-~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~y  291 (523)
                      ++++||||.|+|++||++|.+. .+|+||||+|.+.+|.|+|||+.+++++|++|...+++|++.+...|+||.+||+||
T Consensus         1 ~~~~Wy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~LV~~y   80 (109)
T d2shpa2           1 KSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYY   80 (109)
T ss_dssp             CCSTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEECSSSCEEETTSCEESSHHHHHHHH
T ss_pred             CCCccccCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCcEEEEEEEEcCCeEEEcCCcccCCHHHHHHHH
Confidence            3679999999999999999754 489999999998899999999999999999999888899998889999999999999


Q ss_pred             hhCCccc-CCCCcceeeccccccCC
Q psy8552         292 KHESLSQ-YNSTLDTRLLYPVSRFS  315 (523)
Q Consensus       292 ~~~~~~~-~~~~l~~~L~~p~~~~~  315 (523)
                      +.+++.. ...++.+.|+.|+++..
T Consensus        81 ~~~~~~~~~~~~~~~~L~~P~~~~~  105 (109)
T d2shpa2          81 MEHHGQLKEKNGDVIELKYPLNCAD  105 (109)
T ss_dssp             HTCTTCSBSSSSCBCCCCEECCCCC
T ss_pred             HHCCCCcccCCCCeeeccccCCCCC
Confidence            9877644 24568889999998644

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.1e-24  Score=175.43  Aligned_cols=95  Identities=32%  Similarity=0.513  Sum_probs=86.5

Q ss_pred             CCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHH
Q psy8552         417 GEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY  493 (523)
Q Consensus       417 ~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y  493 (523)
                      ..+|||| .|+|++||++|.++++|+||||.|+  +|.|+||++.+++++||+|..+++++++.+ ...|+||.+||+||
T Consensus         2 ~~~PWy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~-~~~F~sl~~LV~~y   80 (101)
T d1k9aa2           2 SLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDE-EVYFENLMQLVEHY   80 (101)
T ss_dssp             ESCTTBCTTCCHHHHHHHTCSCCTTEEEEEECSSSTTSEEEEEECSSSEEEEEEEEETTEEESSS-SSCBSSHHHHHHHH
T ss_pred             CcCCccCCCCCHHHHHHHHcCCCCCCEEEeccCCCCCCEEEEEEeCCccEEEEEEEcCCCceecC-CcccCCHHHHHHHH
Confidence            4579999 9999999999998899999999997  889999999999999999999888777654 57899999999999


Q ss_pred             hhCCccccCCccceeecccccCCC
Q psy8552         494 AANSLEEHNDDLKTTLAYPVFAPA  517 (523)
Q Consensus       494 ~~~~l~~~~~~l~~~L~~pv~~~~  517 (523)
                      ++++     +|++|.|+.||+++.
T Consensus        81 ~~~~-----~gl~~~L~~P~~~~~   99 (101)
T d1k9aa2          81 TTDA-----DGLCTRLIKPKVMEG   99 (101)
T ss_dssp             HHCC-----TTSSSCCCEECCCTT
T ss_pred             hhCC-----CCCceeCCccccCCC
Confidence            9986     899999999998764

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.9e-24  Score=176.64  Aligned_cols=96  Identities=30%  Similarity=0.544  Sum_probs=85.4

Q ss_pred             CCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEECC-----eeEEEEEEE-eCCeEEeCCCCccCC
Q psy8552         212 LRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGG-----TNKLIKIFH-RNGRYGFSEPFKFTS  283 (523)
Q Consensus       212 l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~~-----~v~h~~I~~-~~~~~~~~~~~~F~s  283 (523)
                      ++.++||||.|+|++||++|+.  .++|+||||+|++.+|.|+||++..+     .++|++|.. .+|+|++.+...|+|
T Consensus         1 le~~pWy~g~isR~eAe~~L~~~~~~~GtFLVR~S~~~~g~~~lsv~~~~~~~~~~v~h~~i~~~~~~~~~~~~~~~F~s   80 (105)
T d1lkka_           1 LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPG   80 (105)
T ss_dssp             CCCCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSCBSS
T ss_pred             CccCCccCCCCCHHHHHHHHHhcCCCCCcEEEEccCCCCCCEEEEEEEcccCCCccEEEEEEEEcCCCCEEecCCcccCC
Confidence            5788999999999999999954  68999999999998999999998643     389999987 577899988888999


Q ss_pred             HHHHHHHHhhCCcccCCCCcceeeccccc
Q psy8552         284 VVELINYYKHESLSQYNSTLDTRLLYPVS  312 (523)
Q Consensus       284 l~~LV~~y~~~~~~~~~~~l~~~L~~p~~  312 (523)
                      |.+||+||+.+++     ++++.|+.||+
T Consensus        81 l~~LV~~y~~~~~-----gL~~~L~~Pcp  104 (105)
T d1lkka_          81 LHELVRHYTNASD-----GLCTRLSRPCQ  104 (105)
T ss_dssp             HHHHHHHHHHCCT-----TSSSCCCSBCC
T ss_pred             HHHHHHHHhhCCC-----CCCccCCCcCC
Confidence            9999999999875     78999999987

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.3e-24  Score=175.74  Aligned_cols=95  Identities=27%  Similarity=0.315  Sum_probs=84.1

Q ss_pred             CCcccc-cCCHHHHHHHhcC--CCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHH
Q psy8552         418 EKTWLV-RMSRAQAEALLSG--RPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  492 (523)
Q Consensus       418 ~~~W~~-~isr~~Ae~~L~~--~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~  492 (523)
                      ++|||| .|+|++||.+|+.  .++|+||||.|+  +|.|+|||+.+++++||+|.++.+|.++......|+||.+||+|
T Consensus         1 sepWy~g~isR~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~   80 (100)
T d1rjaa_           1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNY   80 (100)
T ss_dssp             CCCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECSSSCEEEETTEEESSHHHHHHH
T ss_pred             CCCCcCCCCCHHHHHHHHhccCCCCCeEEeecCCCCCCCEEEEEEcCCCceEEEEEECCCCCEEecCCCccCCHHHHHHH
Confidence            479999 9999999999964  469999999997  88999999999999999999987775555555789999999999


Q ss_pred             HhhCCccccCCccceeecccccCCC
Q psy8552         493 YAANSLEEHNDDLKTTLAYPVFAPA  517 (523)
Q Consensus       493 y~~~~l~~~~~~l~~~L~~pv~~~~  517 (523)
                      |+.++     .|++++|+.||++++
T Consensus        81 y~~~~-----~~~~~~L~~Pc~~~e  100 (100)
T d1rjaa_          81 HRAQS-----LSHGLRLAAPCRKHE  100 (100)
T ss_dssp             HHHCC-----TTSSSCCCSBCCCCC
T ss_pred             HhhCC-----CCCccCcCeecCCCC
Confidence            99997     778999999998863

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-23  Score=179.89  Aligned_cols=98  Identities=24%  Similarity=0.306  Sum_probs=87.5

Q ss_pred             CCCCcccc-cCCHHHHHHHhc--CCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHH
Q psy8552         416 SGEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  490 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~--~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV  490 (523)
                      .+.+|||| .|+|++||++|.  +.+||+||||.|+  +|.|+||++++++|+||+|.+.++|+++.+....|+||.+||
T Consensus         2 ~~~~PWyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~i~~~~~F~sl~eLV   81 (129)
T d1a81a1           2 ANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADLC   81 (129)
T ss_dssp             TTSSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHH
T ss_pred             CCCCCcccCCCCHHHHHHHHHhcCCCCccEEEEccCCCCcceEEEeeecccceEEEEEEcCCCCeeecCCcccCCHHHHH
Confidence            45689999 999999999995  4579999999998  899999999999999999999888766666667899999999


Q ss_pred             HHHhhCCccccCCccceeecccccCCCC
Q psy8552         491 LHYAANSLEEHNDDLKTTLAYPVFAPAS  518 (523)
Q Consensus       491 ~~y~~~~l~~~~~~l~~~L~~pv~~~~~  518 (523)
                      +||++++     +|++|.|+.||+++.+
T Consensus        82 ~~Y~~~~-----~gl~~~L~~P~~~~~~  104 (129)
T d1a81a1          82 HYHSQES-----DGLVCLLKKPFNRPQG  104 (129)
T ss_dssp             HHHTTCC-----TTSSSCCCEECCCCSS
T ss_pred             HHHhhCC-----CCCcccCCCCCCCCCC
Confidence            9999986     8999999999987544

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-23  Score=174.17  Aligned_cols=96  Identities=25%  Similarity=0.505  Sum_probs=82.7

Q ss_pred             CCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEe-CC---eEEeCC-CCccCCHH
Q psy8552         213 RDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NG---RYGFSE-PFKFTSVV  285 (523)
Q Consensus       213 ~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~-~~---~~~~~~-~~~F~sl~  285 (523)
                      ++++||||.|+|++||++|.+  .++|+||||+|++.+|.|+|||+.+++++||+|... ++   .|.+.+ ...|+||.
T Consensus         3 ~~~~Wyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~F~sl~   82 (105)
T d1nrva_           3 RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDLI   82 (105)
T ss_dssp             TTSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC-----CCEESSTTSSCBSSHH
T ss_pred             ccCcccCCCCCHHHHHHHHhhcCCCCceEEEEeCCCCCCCEEEEEEECCceeEEEEEEecCCCeEEEEECCCCcccCCHH
Confidence            578999999999999999964  588999999999989999999999999999999862 22   255544 46799999


Q ss_pred             HHHHHHhhCCcccCCCCcceeecccccc
Q psy8552         286 ELINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       286 ~LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      +||+||+.++.     ++++.|+.||+|
T Consensus        83 ~LV~~y~~~~~-----~L~~~L~~Pc~r  105 (105)
T d1nrva_          83 QLVDFYQLNKG-----VLPCKLKHHCIR  105 (105)
T ss_dssp             HHHHHHTTCCT-----TSSSCCCEECCC
T ss_pred             HHHHHhccCcC-----CCCccCCcCCCC
Confidence            99999998774     789999999985

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=6.2e-24  Score=175.15  Aligned_cols=95  Identities=25%  Similarity=0.439  Sum_probs=83.3

Q ss_pred             CCCccccCCCHHHHHHHhc-CCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCC-----CCccCCHHH
Q psy8552         214 DAEWYWGDISRDDVNDKLA-DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSE-----PFKFTSVVE  286 (523)
Q Consensus       214 ~~~wyhg~isr~~Ae~lL~-~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~-----~~~F~sl~~  286 (523)
                      ++|||||.|+|++||++|. +.++|+||||+|++.+|.|+||++++++++||+|.+ .+|.|++.+     ...|+||.+
T Consensus         2 d~PWy~g~isR~~AE~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~~~~~~F~sl~~   81 (103)
T d1i3za_           2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIFPNLQE   81 (103)
T ss_dssp             CCTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECTTSCEEECBCTTSCCCEESSSHH
T ss_pred             CCCcccCCCCHHHHHHHHHhCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEeEEcCCCcEEEeccCCcCccccCCHHH
Confidence            5799999999999999995 468899999999998999999999999999999986 677788743     246999999


Q ss_pred             HHHHHhhCCcccCCCCcceeecccccc
Q psy8552         287 LINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       287 LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      ||+||+.++.     |+.+.|+.||.|
T Consensus        82 LV~~y~~~~~-----gl~~~L~~P~~R  103 (103)
T d1i3za_          82 LVSKYGKPGQ-----GLVVHLSNPIMR  103 (103)
T ss_dssp             HHHHTTSSSS-----SSSSCCCEECC-
T ss_pred             HHHHhhhCCC-----CCeEeCCccccC
Confidence            9999998764     789999999875

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.5e-24  Score=179.81  Aligned_cols=97  Identities=26%  Similarity=0.499  Sum_probs=86.4

Q ss_pred             CCCCCCccccCCCHHHHHHHhc--CCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeCCCCccCCHHHH
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLA--DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFSEPFKFTSVVEL  287 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~--~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~L  287 (523)
                      .++.+|||||.|+|++||++|.  +.++|+||||+|+. +|.|+|||+.+++++||+|.. .+|.|+++++..|+||.+|
T Consensus        25 ~he~~pWyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~-~~~yvLSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sL~~L  103 (125)
T d1a81a2          25 AHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDN-NGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQL  103 (125)
T ss_dssp             SGGGSTTEEEECCHHHHHHHHHSSCCCTTCEEEEECSS-SSCEEEEEEETTEEEEEEEEECTTSCEECTTSCCBSCHHHH
T ss_pred             ccccCCccCCCCCHHHHHHHHHhcCCCCceEEEEecCC-CCCEEEEeeccccceeEeeeEcCCCcEeccCCcccCCHHHH
Confidence            4567899999999999999995  46899999999976 789999999999999999997 4667888877889999999


Q ss_pred             HHHHhhCCcccCCCCcceeecccccc
Q psy8552         288 INYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       288 V~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      |+||+.++     +++++.|+.||+|
T Consensus       104 I~~y~~~~-----~gL~~~L~~P~~k  124 (125)
T d1a81a2         104 VEHYSYKA-----DGLLRVLTVPCQK  124 (125)
T ss_dssp             HHHHTTCC-----TTSSSCCCCBCCC
T ss_pred             HHHHhhCC-----CCCCccCCeeCCC
Confidence            99999876     3789999999986

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.1e-23  Score=179.35  Aligned_cols=96  Identities=26%  Similarity=0.448  Sum_probs=87.6

Q ss_pred             CCCCCcccc-cCCHHHHHHHh--cCCCCCeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALL--SGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  490 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L--~~~~~G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV  490 (523)
                      .++.+|||| .|+|++||++|  .++++|+||||.|+ +|.|+|||+.+++|+||+|..+++|+++......|+||.+||
T Consensus        25 ~he~~pWyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~~yvLSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sL~~LI  104 (125)
T d1a81a2          25 AHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLV  104 (125)
T ss_dssp             SGGGSTTEEEECCHHHHHHHHHSSCCCTTCEEEEECSSSSCEEEEEEETTEEEEEEEEECTTSCEECTTSCCBSCHHHHH
T ss_pred             ccccCCccCCCCCHHHHHHHHHhcCCCCceEEEEecCCCCCEEEEeeccccceeEeeeEcCCCcEeccCCcccCCHHHHH
Confidence            478889999 99999999999  45679999999999 899999999999999999999888877776667899999999


Q ss_pred             HHHhhCCccccCCccceeecccccC
Q psy8552         491 LHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       491 ~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      +||+.++     +||.|+|++||++
T Consensus       105 ~~y~~~~-----~gL~~~L~~P~~k  124 (125)
T d1a81a2         105 EHYSYKA-----DGLLRVLTVPCQK  124 (125)
T ss_dssp             HHHTTCC-----TTSSSCCCCBCCC
T ss_pred             HHHhhCC-----CCCCccCCeeCCC
Confidence            9999885     8999999999986

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=7.8e-24  Score=178.06  Aligned_cols=102  Identities=26%  Similarity=0.530  Sum_probs=89.9

Q ss_pred             CCcCCCCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEE----CCeeEEEEEEE-eCCeEEeCCCC
Q psy8552         207 PETNSLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRK----GGTNKLIKIFH-RNGRYGFSEPF  279 (523)
Q Consensus       207 ~~~~~l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~----~~~v~h~~I~~-~~~~~~~~~~~  279 (523)
                      ...++++.++||||.|+|++||++|+.  .++|+||||+|++.+|.|+||++.    ++.++||+|.. .+|.|++.+..
T Consensus         4 ap~~~l~~e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~v~H~~i~~~~~g~~~l~~~~   83 (114)
T d1blja_           4 APVETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRI   83 (114)
T ss_dssp             CSSCCSCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETTTEEEEETTE
T ss_pred             CCcCccccCCCcCCCCCHHHHHHHHHhcCCCCceEEEeccCCCCCCeEEEEEeeccCCCEEEEEEEEEcCCCCEEecCCc
Confidence            346778899999999999999999964  589999999999889999999984    35689999997 46789998778


Q ss_pred             ccCCHHHHHHHHhhCCcccCCCCcceeecccccc
Q psy8552         280 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       280 ~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      .|+||.+||+||+.+++     ++++.|+.||++
T Consensus        84 ~F~sl~eLV~~y~~~~~-----gL~~~L~~PC~~  112 (114)
T d1blja_          84 TFPTLQALVQHYSKKGD-----GLCQKLTLPCVN  112 (114)
T ss_dssp             EESSHHHHHHHHHHCCS-----SSSSCCCCCSCC
T ss_pred             eECCHHHHHHHHhhCCC-----CCCccCCccCcC
Confidence            89999999999999875     789999999986

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=1.2e-23  Score=174.92  Aligned_cols=100  Identities=55%  Similarity=0.962  Sum_probs=92.6

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  492 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~  492 (523)
                      .++.++||| .|+|++||.+|.++++|+||||.|+ +|.|+||++.+++++||+|...++|+++......|+||.+||+|
T Consensus         5 ~~~~~~Wy~g~isR~eAe~lL~~~~~G~FLVR~S~~~~~y~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LI~~   84 (107)
T d1qada_           5 HHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLKELVLH   84 (107)
T ss_dssp             GGSGGGTEEEECCHHHHHHHHTTCCTTEEEEEEC---CCEEEEEEETTEEEEEEEEEETTEEESSTTCCCBSSHHHHHHH
T ss_pred             ccCCCcccCCCCCHHHHHHHHcCCCCCcEEEEecCCCCCEEEEEEecCCeEEEEEEECCCCeEEcCCCCccCCHHHHHHH
Confidence            578889999 9999999999998899999999999 99999999999999999999999998887777789999999999


Q ss_pred             HhhCCccccCCccceeeccccc
Q psy8552         493 YAANSLEEHNDDLKTTLAYPVF  514 (523)
Q Consensus       493 y~~~~l~~~~~~l~~~L~~pv~  514 (523)
                      |+++++...+++++++|++||.
T Consensus        85 Y~~~~l~~~~~~l~~~L~~Pv~  106 (107)
T d1qada_          85 YQHTSLVQHNDSLNVTLAYPVY  106 (107)
T ss_dssp             HHHSCGGGTCTTCCCCCCEETT
T ss_pred             HHhCccccccCCCceEcccccc
Confidence            9999999989999999999985

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-23  Score=177.83  Aligned_cols=96  Identities=28%  Similarity=0.452  Sum_probs=86.3

Q ss_pred             CCCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEe-CCeEEeCCCCccCCHHHH
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NGRYGFSEPFKFTSVVEL  287 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~-~~~~~~~~~~~F~sl~~L  287 (523)
                      .++.+|||||.|+|++||++|..  .++|+||||.|++ +|.|+|||+++++++||+|... +|.|++.+...|+||.+|
T Consensus        25 ~~e~~pWyhg~isR~eAe~lL~~~~~~dGtFLVR~S~~-~g~yvLSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~L  103 (124)
T d2oq1a2          25 AHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQL  103 (124)
T ss_dssp             GGGGSTTBCSSCCHHHHHHHHHSSCCCTTEEEEEECSS-TTEEEEEEEETTEEEEEEEEECTTSCEESTTSCCBSSHHHH
T ss_pred             cccCCCCccCCCCHHHHHHHHhhcCCCCceEEeEecCC-CCCEEEEeecCCceEEEEEEECCCCCEEeCCCcccCCHHHH
Confidence            34678999999999999999975  4889999999976 7899999999999999999874 667888877899999999


Q ss_pred             HHHHhhCCcccCCCCcceeeccccc
Q psy8552         288 INYYKHESLSQYNSTLDTRLLYPVS  312 (523)
Q Consensus       288 V~~y~~~~~~~~~~~l~~~L~~p~~  312 (523)
                      |+||+.++.     ++++.|+.|||
T Consensus       104 V~~y~~~~~-----gL~~~L~~PcP  123 (124)
T d2oq1a2         104 VEYLKLKAD-----GLIYCLKEACP  123 (124)
T ss_dssp             HHHHHHCCT-----TSSSCCCSBCC
T ss_pred             HHHHhhCCC-----CCcccCCCcCc
Confidence            999998874     79999999997

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.3e-23  Score=177.07  Aligned_cols=96  Identities=26%  Similarity=0.358  Sum_probs=87.2

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcC--CCCCeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  490 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~--~~~G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV  490 (523)
                      .++.+|||| .|+|++||.+|+.  .+||+||||.|+ +|.|+|||+++++++||+|.++++|.++...+..|+||.+||
T Consensus        25 ~~e~~pWyhg~isR~eAe~lL~~~~~~dGtFLVR~S~~~g~yvLSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV  104 (124)
T d2oq1a2          25 AHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLV  104 (124)
T ss_dssp             GGGGSTTBCSSCCHHHHHHHHHSSCCCTTEEEEEECSSTTEEEEEEEETTEEEEEEEEECTTSCEESTTSCCBSSHHHHH
T ss_pred             cccCCCCccCCCCHHHHHHHHhhcCCCCceEEeEecCCCCCEEEEeecCCceEEEEEEECCCCCEEeCCCcccCCHHHHH
Confidence            367889999 9999999999954  468999999999 999999999999999999999888777776678999999999


Q ss_pred             HHHhhCCccccCCccceeecccccC
Q psy8552         491 LHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       491 ~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      +||++++     +||+|+|+.||+.
T Consensus       105 ~~y~~~~-----~gL~~~L~~PcP~  124 (124)
T d2oq1a2         105 EYLKLKA-----DGLIYCLKEACPN  124 (124)
T ss_dssp             HHHHHCC-----TTSSSCCCSBCCC
T ss_pred             HHHhhCC-----CCCcccCCCcCcC
Confidence            9999986     8999999999973

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.4e-23  Score=174.06  Aligned_cols=97  Identities=31%  Similarity=0.544  Sum_probs=85.6

Q ss_pred             CCCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEECC-----eeEEEEEEE-eCCeEEeCCCCccC
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKGG-----TNKLIKIFH-RNGRYGFSEPFKFT  282 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~~-----~v~h~~I~~-~~~~~~~~~~~~F~  282 (523)
                      +++.++||||.|+|++||++|++  .++|+||||+|.+.+|.|+||++..+     .++|++|.. .+|.|++.+...|+
T Consensus         1 ~l~~~~Wy~g~i~R~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~i~h~~i~~~~~g~~~~~~~~~F~   80 (106)
T d1o48a_           1 SIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFN   80 (106)
T ss_dssp             CGGGSTTEEESCCHHHHHHHHCCTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSEES
T ss_pred             CcccCCccCCCCCHHHHHHHHHhcCCCCCcEEEEcccCCCCCEEEEEEecccCcccceEEEEEEEecCCCEEEcCCeeEC
Confidence            46789999999999999999965  58999999999988999999998644     577888876 57789998888999


Q ss_pred             CHHHHHHHHhhCCcccCCCCcceeeccccc
Q psy8552         283 SVVELINYYKHESLSQYNSTLDTRLLYPVS  312 (523)
Q Consensus       283 sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~  312 (523)
                      ||.+||+||+.++.     ++++.|+.|||
T Consensus        81 sl~eLV~~y~~~~~-----gL~~~L~~pcP  105 (106)
T d1o48a_          81 SLQQLVAYYSKHAD-----GLCHRLTTVCP  105 (106)
T ss_dssp             SHHHHHHHHTTCCT-----TSSSCCCSBCC
T ss_pred             CHHHHHHHHhhCCC-----CCCccCCCcCC
Confidence            99999999999874     79999999987

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.1e-23  Score=176.80  Aligned_cols=99  Identities=26%  Similarity=0.305  Sum_probs=88.2

Q ss_pred             CCCCcccc-cCCHHHHHHHhc--CCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHH
Q psy8552         416 SGEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  490 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~--~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV  490 (523)
                      ...+|||| .|+|++||++|+  ++++|+||||.|+  +|.|+||++.+++++||+|...++|.++...+..|+||.+||
T Consensus         3 ~~~~pWy~g~i~R~~Ae~~L~~~g~~~G~FLVR~S~~~~g~yvLSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~Lv   82 (130)
T d2oq1a1           3 AAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELC   82 (130)
T ss_dssp             TTTCTTBCBSCCHHHHHHHHHHTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHH
T ss_pred             ccCCCCccCCCCHHHHHHHHHhcCCCCceEEEEecCCCCccEEEEEeeCCceEEEEEEEcCCCceeccCCCCcCCHHHHH
Confidence            45679999 999999999995  4579999999997  899999999999999999998887766666667899999999


Q ss_pred             HHHhhCCccccCCccceeecccccCCCCC
Q psy8552         491 LHYAANSLEEHNDDLKTTLAYPVFAPASG  519 (523)
Q Consensus       491 ~~y~~~~l~~~~~~l~~~L~~pv~~~~~~  519 (523)
                      +||+.++     +||+|+|+.||+++.+.
T Consensus        83 ~~Y~~~~-----~gL~~~L~~P~~r~~~~  106 (130)
T d2oq1a1          83 EFYSRDP-----DGLPCNLRKPCNRPSGL  106 (130)
T ss_dssp             HHHHHCC-----TTSSSCCCSBCCCCTTC
T ss_pred             HHHhhCC-----CCCCccCCccCCCCCCC
Confidence            9999986     89999999999987543

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.4e-23  Score=172.40  Aligned_cols=95  Identities=23%  Similarity=0.346  Sum_probs=80.7

Q ss_pred             CCCCcccc-cCCHHHHHHHhc--CCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCc---EEE-ecCCCCCCCH
Q psy8552         416 SGEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERG---FGF-AEPFNIYPSL  486 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~--~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~---~~~-~~~~~~F~sl  486 (523)
                      +++++||| .|+|++||++|.  +.+||+||||.|+  +|.|+|||+.+++|+||+|...+++   ++. .+....|+||
T Consensus         2 h~~~~Wyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~F~sl   81 (105)
T d1nrva_           2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDL   81 (105)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC-----CCEESSTTSSCBSSH
T ss_pred             CccCcccCCCCCHHHHHHHHhhcCCCCceEEEEeCCCCCCCEEEEEEECCceeEEEEEEecCCCeEEEEECCCCcccCCH
Confidence            57889999 999999999994  5679999999998  8899999999999999999986543   233 3334689999


Q ss_pred             HHHHHHHhhCCccccCCccceeecccccC
Q psy8552         487 GALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       487 ~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      .+||+||++++     +||+|+|+.||++
T Consensus        82 ~~LV~~y~~~~-----~~L~~~L~~Pc~r  105 (105)
T d1nrva_          82 IQLVDFYQLNK-----GVLPCKLKHHCIR  105 (105)
T ss_dssp             HHHHHHHTTCC-----TTSSSCCCEECCC
T ss_pred             HHHHHHhccCc-----CCCCccCCcCCCC
Confidence            99999999986     8999999999975

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.3e-23  Score=171.53  Aligned_cols=97  Identities=24%  Similarity=0.405  Sum_probs=84.7

Q ss_pred             CCCCCccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEe-CCeEEeC-----CCCccCCH
Q psy8552         212 LRDAEWYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHR-NGRYGFS-----EPFKFTSV  284 (523)
Q Consensus       212 l~~~~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~-~~~~~~~-----~~~~F~sl  284 (523)
                      ++.+|||||.|+|++||++|.+ ..+|+||||+|++.+|.|+||++.++++.||+|.+. +|.|.+.     +...|+||
T Consensus         1 le~~pwyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~F~sl   80 (104)
T d1d4ta_           1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKI   80 (104)
T ss_dssp             CTTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEECBCTTSCCCCBSSH
T ss_pred             CCcCCccccCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEecCCCceEEEEEEcCCCcEEEeeccCCCCcccCCH
Confidence            5789999999999999999975 458999999999989999999999999999999974 5566552     34679999


Q ss_pred             HHHHHHHhhCCcccCCCCcceeecccccc
Q psy8552         285 VELINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       285 ~~LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      .+||+||+.++.     ++++.|+.||+|
T Consensus        81 ~~Li~~y~~~~~-----gl~~~L~~P~~r  104 (104)
T d1d4ta_          81 KNLISAFQKPDQ-----GIVIPLQYPVEK  104 (104)
T ss_dssp             HHHHHHHTSSSS-----SSSSCCCEECCC
T ss_pred             HHHHHHHhhCCC-----CCcEeCCccccC
Confidence            999999998764     789999999985

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3e-23  Score=171.86  Aligned_cols=94  Identities=34%  Similarity=0.528  Sum_probs=83.1

Q ss_pred             CCCCcccc-cCCHHHHHHHh--cCCCCCeEEeecCC--CCceEEEEEECC-----eeEEEEEEEeCCcEEEecCCCCCCC
Q psy8552         416 SGEKTWLV-RMSRAQAEALL--SGRPDGTFLIRPST--TGQYALSIVCSG-----APKHCLVYETERGFGFAEPFNIYPS  485 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L--~~~~~G~FLvR~s~--~~~~~Ls~~~~~-----~v~h~~I~~~~~~~~~~~~~~~F~s  485 (523)
                      ++.++||| .|+|++||++|  .++++|+||||.|+  +|.|+||++..+     .|+||+|...++|.++......|+|
T Consensus         1 le~~pWy~g~isR~eAe~~L~~~~~~~GtFLVR~S~~~~g~~~lsv~~~~~~~~~~v~h~~i~~~~~~~~~~~~~~~F~s   80 (105)
T d1lkka_           1 LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPG   80 (105)
T ss_dssp             CCCCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSCBSS
T ss_pred             CccCCccCCCCCHHHHHHHHHhcCCCCCcEEEEccCCCCCCEEEEEEEcccCCCccEEEEEEEEcCCCCEEecCCcccCC
Confidence            46789999 99999999999  45679999999997  899999998743     3899999998877777666678999


Q ss_pred             HHHHHHHHhhCCccccCCccceeeccccc
Q psy8552         486 LGALVLHYAANSLEEHNDDLKTTLAYPVF  514 (523)
Q Consensus       486 l~~LV~~y~~~~l~~~~~~l~~~L~~pv~  514 (523)
                      |.+||+||++++     +||+|+|+.||+
T Consensus        81 l~~LV~~y~~~~-----~gL~~~L~~Pcp  104 (105)
T d1lkka_          81 LHELVRHYTNAS-----DGLCTRLSRPCQ  104 (105)
T ss_dssp             HHHHHHHHHHCC-----TTSSSCCCSBCC
T ss_pred             HHHHHHHHhhCC-----CCCCccCCCcCC
Confidence            999999999996     899999999996

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=1.3e-23  Score=173.31  Aligned_cols=99  Identities=26%  Similarity=0.521  Sum_probs=85.6

Q ss_pred             CCCCCCCccccCCCHHHHHHHhcCCC-CceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHH
Q psy8552         210 NSLRDAEWYWGDISRDDVNDKLADTA-DGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELI  288 (523)
Q Consensus       210 ~~l~~~~wyhg~isr~~Ae~lL~~~~-~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV  288 (523)
                      ..++.++||||.|+|++||++|.+.+ +|+||||+|+. +|.|+|||+.+++++||+|..+++.|.++ ...|.||.+||
T Consensus         4 ~~he~~~Wy~g~i~R~eAe~lL~~~~~~G~FLVR~S~~-~~~yvLSv~~~~~v~H~~I~~~~~~~~~~-~~~F~sl~~LV   81 (105)
T d2fcia1           4 GIHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNE-PNSYAISFRAEGKIKHCRVQQEGQTVMLG-NSEFDSLVDLI   81 (105)
T ss_dssp             CTTSSSCCCCSSSCSHHHHHHHHHSSSSCCEEEEECSS-TTCEEEEEEETTEECCCEEBCCSSCEECS-SSEESTTHHHH
T ss_pred             cccccCCCccCCCCHHHHHHHHHhCCCCCeEEEEecCC-CCCEEEEEEeccccEEEEEEecCCeEecC-CcccCCHHHHH
Confidence            44678899999999999999998654 89999999965 89999999999999999998765555554 57899999999


Q ss_pred             HHHhhCCcccCCCCcceeeccccccCC
Q psy8552         289 NYYKHESLSQYNSTLDTRLLYPVSRFS  315 (523)
Q Consensus       289 ~~y~~~~~~~~~~~l~~~L~~p~~~~~  315 (523)
                      +||+.+++     ++.+.|+.||++..
T Consensus        82 ~~y~~~~~-----~~~~~L~~P~~~~~  103 (105)
T d2fcia1          82 SYYEKHPL-----YRKMKLRYPINEEN  103 (105)
T ss_dssp             HHHHHSCC-----STTCSSCCCCCCTT
T ss_pred             HHHhhCCC-----CCccCCCCCCCCCC
Confidence            99999886     67899999998743

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=4.2e-23  Score=171.51  Aligned_cols=102  Identities=33%  Similarity=0.518  Sum_probs=89.0

Q ss_pred             CCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEe-CCCCccCCHHHHH
Q psy8552         210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGF-SEPFKFTSVVELI  288 (523)
Q Consensus       210 ~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~-~~~~~F~sl~~LV  288 (523)
                      ..++.++||||.|+|++||++|.+.++|+||||.|+. +|.|+||++.+++++||+|...++++++ .....|+||.+||
T Consensus         4 p~~~~~~Wy~g~isR~eAe~lL~~~~~G~FLVR~S~~-~~~y~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LI   82 (107)
T d1qada_           4 PHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSK-QGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLKELV   82 (107)
T ss_dssp             GGGSGGGTEEEECCHHHHHHHHTTCCTTEEEEEEC----CCEEEEEEETTEEEEEEEEEETTEEESSTTCCCBSSHHHHH
T ss_pred             CccCCCcccCCCCCHHHHHHHHcCCCCCcEEEEecCC-CCCEEEEEEecCCeEEEEEEECCCCeEEcCCCCccCCHHHHH
Confidence            3467789999999999999999999999999999965 8999999999999999999987777666 4557799999999


Q ss_pred             HHHhhCCcccCCCCcceeeccccc
Q psy8552         289 NYYKHESLSQYNSTLDTRLLYPVS  312 (523)
Q Consensus       289 ~~y~~~~~~~~~~~l~~~L~~p~~  312 (523)
                      +||+.+++...+.++.+.|+.|+-
T Consensus        83 ~~Y~~~~l~~~~~~l~~~L~~Pv~  106 (107)
T d1qada_          83 LHYQHTSLVQHNDSLNVTLAYPVY  106 (107)
T ss_dssp             HHHHHSCGGGTCTTCCCCCCEETT
T ss_pred             HHHHhCccccccCCCceEcccccc
Confidence            999999988877889999999974

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.1e-23  Score=170.76  Aligned_cols=95  Identities=34%  Similarity=0.689  Sum_probs=84.8

Q ss_pred             CCCCCCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEE-----CCeeEEEEEEE-eCCeEEeCCCCccC
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRK-----GGTNKLIKIFH-RNGRYGFSEPFKFT  282 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~-----~~~v~h~~I~~-~~~~~~~~~~~~F~  282 (523)
                      +++.++||||.|+|++||++|.+  .++|+||||+|++.+|.|+||++.     ++.++|++|.. .+|.|++.+...|+
T Consensus         2 ~l~~~~Wy~g~i~R~eAe~~L~~~g~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~h~~i~~~~~g~~~~~~~~~F~   81 (104)
T d1g83a2           2 SIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFE   81 (104)
T ss_dssp             SGGGSSSBCTTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTCEEEEEEEECSSSCEEEEEEEEEECTTSCEEETTTEEES
T ss_pred             ccccCCCcCCCCCHHHHHHHHHhcCCCCCcEEEeccCCCCCCeEEEEEEeecCcCCeEEEEEEEEcCCCCEEecCCcccC
Confidence            57889999999999999999975  479999999999989999999985     56799999986 56788888888999


Q ss_pred             CHHHHHHHHhhCCcccCCCCcceeeccc
Q psy8552         283 SVVELINYYKHESLSQYNSTLDTRLLYP  310 (523)
Q Consensus       283 sl~~LV~~y~~~~~~~~~~~l~~~L~~p  310 (523)
                      ||.+||+||+.++.     +|++.|+.|
T Consensus        82 sl~~LV~~y~~~~~-----gL~~~L~~P  104 (104)
T d1g83a2          82 TLQQLVQHYSERAA-----GLSSRLVVP  104 (104)
T ss_dssp             SHHHHHHHHHHCCT-----TSSSCCCCC
T ss_pred             CHHHHHHHHhhCCC-----CCceeCCCC
Confidence            99999999999875     789999877

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.2e-23  Score=170.39  Aligned_cols=94  Identities=34%  Similarity=0.586  Sum_probs=84.0

Q ss_pred             CCccccCCCHHHHHHHhc--CCCCceEEEEcCCCCCCcEEEEEEE-----CCeeEEEEEEE-eCCeEEeCCCCccCCHHH
Q psy8552         215 AEWYWGDISRDDVNDKLA--DTADGTFLVRDTSTKNGEYTLTLRK-----GGTNKLIKIFH-RNGRYGFSEPFKFTSVVE  286 (523)
Q Consensus       215 ~~wyhg~isr~~Ae~lL~--~~~~G~FLVR~s~~~~g~f~LSv~~-----~~~v~h~~I~~-~~~~~~~~~~~~F~sl~~  286 (523)
                      ++||||.|+|++||++|.  +.++|+||||+|++.+|.|+|||+.     ++.|+|++|.. .+|.|++.+...|+||.+
T Consensus         1 e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~H~~i~~~~~g~~~~~~~~~F~sl~~   80 (103)
T d1qcfa2           1 EEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQE   80 (103)
T ss_dssp             STTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECTTSCEESSSSSCBSSHHH
T ss_pred             CCccCCCCCHHHHHHHHhhcCCCCCcEEEEccCCCCCCeEEEEEecCCCcCceEEEEEEEEcCCCceeecCCcccCCHHH
Confidence            589999999999999995  3689999999999989999999985     57899999987 467888877788999999


Q ss_pred             HHHHHhhCCcccCCCCcceeecccccc
Q psy8552         287 LINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       287 LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      ||+||+.+++     ++++.|+.||++
T Consensus        81 LV~~y~~~~~-----gL~~~L~~PC~~  102 (103)
T d1qcfa2          81 LVDHYKKGND-----GLCQKLSVPCMS  102 (103)
T ss_dssp             HHHHHTSSCT-----TSSSCCCSBCCC
T ss_pred             HHHHHhhCCC-----CCCccCCccCCC
Confidence            9999998874     799999999985

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-23  Score=175.02  Aligned_cols=103  Identities=21%  Similarity=0.429  Sum_probs=89.8

Q ss_pred             CcCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCC----CccCC
Q psy8552         208 ETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEP----FKFTS  283 (523)
Q Consensus       208 ~~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~----~~F~s  283 (523)
                      ++..+++++||||.|+|++||++|.+.++|+||||+|++.+|.|+||++.+++++|++|...+|+|.+...    ..|+|
T Consensus         4 ~~~~l~~~~Wy~g~isR~~Ae~lL~~~~~GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~~~~l~~~~~~~~~F~s   83 (112)
T d2izva2           4 DLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPD   83 (112)
T ss_dssp             THHHHHHCTTEEEECCHHHHHHHHTTCCTTEEEEEECSSTTCSEEEEEEETTEEEEEECEEETTEEESCTTCTTSCCBSS
T ss_pred             ChHHhccCCCcCCCCCHHHHHHHHccCCCCcEEEeecCCCCCCeEEEEEecCCceEEEEEEeCCeEEEeecccCcccCCC
Confidence            34567889999999999999999999899999999999889999999999999999999999999998643    26999


Q ss_pred             HHHHHHHHhhCCcccCCCCcceeecccccc
Q psy8552         284 VVELINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       284 l~~LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      |.+||+||+.++...   .....|+.||++
T Consensus        84 l~~LV~~Y~~~~~~~---~~~~llt~P~~r  110 (112)
T d2izva2          84 ITGLLEHYKDPSACM---FFEPLLSTPLIR  110 (112)
T ss_dssp             HHHHHHHTCCGGGCC---TTSCCCCEECCC
T ss_pred             HHHHHHHHhcccccc---cCccccCCCCCC
Confidence            999999999887643   234568888876

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=4.6e-24  Score=178.82  Aligned_cols=106  Identities=74%  Similarity=1.250  Sum_probs=96.5

Q ss_pred             CcCCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCC-CCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHH
Q psy8552         208 ETNSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVE  286 (523)
Q Consensus       208 ~~~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~-~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~  286 (523)
                      ...+++.++||||.|+|++||++|.+.++|+||||+|++. ++.|+||++.++.++|++|...+|+|++.+...|+||.+
T Consensus         4 ~~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~~ls~~~~~~~~H~~I~~~~~~~~~~~~~~F~sl~~   83 (111)
T d1fu6a_           4 NNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKYGFSDPLTFNSVVE   83 (111)
T ss_dssp             CCCCCSCCSSCCSSCCSHHHHHHSSSCSSCCCCCBSSCCSSSCCSBCEEEETTEEEECCCCCTTTCCCTTTTSCCCCTTH
T ss_pred             CCCccCcCcCCCCCCCHHHHHHHhCcCCCCEEEEEeccCCCCccEEEEEecCCceEEEEEEEcCCeEEECCCcccCCHHH
Confidence            3456889999999999999999999888999999999865 467999999999999999998889999988889999999


Q ss_pred             HHHHHhhCCcccCCCCcceeecccccc
Q psy8552         287 LINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       287 LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      ||+||+.+++.....++++.|++||.|
T Consensus        84 LV~~y~~~~l~~~~~~l~~~L~~Pv~r  110 (111)
T d1fu6a_          84 LINHYRNESLAQYNPKLDVKLLYPVSK  110 (111)
T ss_dssp             HHHHHHTTCSTTTCSSCCCCSCCCCCC
T ss_pred             HHHHHhhCcCCccCCCCccccCccccC
Confidence            999999999877677899999999986

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.7e-23  Score=171.37  Aligned_cols=98  Identities=24%  Similarity=0.439  Sum_probs=84.4

Q ss_pred             CCCCCccccCCCHHHHHHHhc--CCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-e-CCe--EEeCC-CCccCCH
Q psy8552         212 LRDAEWYWGDISRDDVNDKLA--DTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-R-NGR--YGFSE-PFKFTSV  284 (523)
Q Consensus       212 l~~~~wyhg~isr~~Ae~lL~--~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~-~~~--~~~~~-~~~F~sl  284 (523)
                      +..++||||.|+|++||++|.  +.++|+||||+|++.+|.|+||++.+++++||+|.. + ++.  |.+.+ ...|+||
T Consensus         7 h~~~~Wy~g~isR~~Ae~lL~~~g~~dG~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~F~sl   86 (113)
T d2qmsa1           7 HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDL   86 (113)
T ss_dssp             TTCCTTEEEEBCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEEESSSCEEEESSTTSSCBSSH
T ss_pred             hcCCCccCCCCCHHHHHHHHhccCCCCccEEEEeccCCCCCEEEEEEeCCeEEEEEEEEeCCCCeEEEEecCCCcccCCH
Confidence            467899999999999999996  358999999999998999999999999999999985 3 333  34444 3569999


Q ss_pred             HHHHHHHhhCCcccCCCCcceeeccccccC
Q psy8552         285 VELINYYKHESLSQYNSTLDTRLLYPVSRF  314 (523)
Q Consensus       285 ~~LV~~y~~~~~~~~~~~l~~~L~~p~~~~  314 (523)
                      .+||+||+.++.     ++++.|+.||+|.
T Consensus        87 ~~LI~~y~~~~~-----~L~~~L~~pc~r~  111 (113)
T d2qmsa1          87 LQLVEFHQLNRG-----ILPCLLRHCCTRV  111 (113)
T ss_dssp             HHHHHHHTTCCT-----TSSSCCCEECCSS
T ss_pred             HHHHHHhccCCC-----CCccccCCCCcCc
Confidence            999999999875     7899999999974

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=1.7e-23  Score=172.59  Aligned_cols=98  Identities=32%  Similarity=0.461  Sum_probs=86.4

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCC-CCeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRP-DGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  491 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~-~G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~  491 (523)
                      .++.++||| .|+|++||++|.+.+ +|+||||.|+ +|.|+|||+.+++|+||+|..++. ++..+ ...|+||.+||+
T Consensus         5 ~he~~~Wy~g~i~R~eAe~lL~~~~~~G~FLVR~S~~~~~yvLSv~~~~~v~H~~I~~~~~-~~~~~-~~~F~sl~~LV~   82 (105)
T d2fcia1           5 IHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQEGQ-TVMLG-NSEFDSLVDLIS   82 (105)
T ss_dssp             TTSSSCCCCSSSCSHHHHHHHHHSSSSCCEEEEECSSTTCEEEEEEETTEECCCEEBCCSS-CEECS-SSEESTTHHHHH
T ss_pred             ccccCCCccCCCCHHHHHHHHHhCCCCCeEEEEecCCCCCEEEEEEeccccEEEEEEecCC-eEecC-CcccCCHHHHHH
Confidence            578999999 999999999997665 8999999999 999999999999999999987654 34444 468999999999


Q ss_pred             HHhhCCccccCCccceeecccccCCCCC
Q psy8552         492 HYAANSLEEHNDDLKTTLAYPVFAPASG  519 (523)
Q Consensus       492 ~y~~~~l~~~~~~l~~~L~~pv~~~~~~  519 (523)
                      ||++++     .++.++|++||+++.|.
T Consensus        83 ~y~~~~-----~~~~~~L~~P~~~~~ps  105 (105)
T d2fcia1          83 YYEKHP-----LYRKMKLRYPINEENSS  105 (105)
T ss_dssp             HHHHSC-----CSTTCSSCCCCCCTTTC
T ss_pred             HHhhCC-----CCCccCCCCCCCCCCCC
Confidence            999997     67799999999998774

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.4e-22  Score=164.82  Aligned_cols=87  Identities=23%  Similarity=0.488  Sum_probs=77.9

Q ss_pred             CCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHHH
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINY  290 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~  290 (523)
                      +++..+||||.|+|++||++|.+.++|+||||.|++.+|.|+||++.+++++||+|...++++++.++..|+||.+||+|
T Consensus         2 d~~~~~Wy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~F~sl~~LV~~   81 (97)
T d1r1qa_           2 DIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNKLVDY   81 (97)
T ss_dssp             CCSCCTTBCTTCCHHHHHHHHHTSCTTCEEEEECSSSTTCEEEEEECSSSEEEEECEECTTCCEESSSCCBSSHHHHHHH
T ss_pred             CcccCCccCCCCCHHHHHHHHhcCCCCCEEEeecCCCCCCEEEEEEecCCeEEEEEEEcCCCeEEeCCCCcCCHHHHHHH
Confidence            46788999999999999999999899999999999889999999999999999999986554444456889999999999


Q ss_pred             HhhCCcc
Q psy8552         291 YKHESLS  297 (523)
Q Consensus       291 y~~~~~~  297 (523)
                      |+.+++.
T Consensus        82 y~~~~l~   88 (97)
T d1r1qa_          82 YRTTSIS   88 (97)
T ss_dssp             TTTSCSC
T ss_pred             HccCCcC
Confidence            9998864

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.3e-22  Score=168.77  Aligned_cols=102  Identities=26%  Similarity=0.424  Sum_probs=89.3

Q ss_pred             CCcccc-cCCHHHHHHHhcCCC-CCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHH
Q psy8552         418 EKTWLV-RMSRAQAEALLSGRP-DGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY  493 (523)
Q Consensus       418 ~~~W~~-~isr~~Ae~~L~~~~-~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y  493 (523)
                      +++||| .|+|++||++|.+++ +|+||||.|.  +|.|+||++.+++|+||+|...++++++.+. ..|+||.+||+||
T Consensus         2 ~~~Wy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~-~~F~sl~~LV~~y   80 (109)
T d2shpa2           2 SRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYGG-EKFATLAELVQYY   80 (109)
T ss_dssp             CSTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEECSSSCEEETTS-CEESSHHHHHHHH
T ss_pred             CCccccCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCcEEEEEEEEcCCeEEEcCC-cccCCHHHHHHHH
Confidence            579999 999999999997655 8999999997  8999999999999999999988887777654 7899999999999


Q ss_pred             hhCCccc-cCCccceeecccccCCCCCC
Q psy8552         494 AANSLEE-HNDDLKTTLAYPVFAPASGM  520 (523)
Q Consensus       494 ~~~~l~~-~~~~l~~~L~~pv~~~~~~~  520 (523)
                      +++++.. .++|+.+.|++||+.+.|..
T Consensus        81 ~~~~~~~~~~~~~~~~L~~P~~~~~Pss  108 (109)
T d2shpa2          81 MEHHGQLKEKNGDVIELKYPLNCADPTS  108 (109)
T ss_dssp             HTCTTCSBSSSSCBCCCCEECCCCCCTT
T ss_pred             HHCCCCcccCCCCeeeccccCCCCCCCC
Confidence            9987643 35678899999999887753

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.1e-22  Score=170.95  Aligned_cols=97  Identities=31%  Similarity=0.475  Sum_probs=85.0

Q ss_pred             CCCCCcccc-cCCHHHHHHHhc--CCCCCeEEeecCC--CCceEEEEEE----CCeeEEEEEEEeCCcEEEecCCCCCCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPST--TGQYALSIVC----SGAPKHCLVYETERGFGFAEPFNIYPS  485 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~--~~~~G~FLvR~s~--~~~~~Ls~~~----~~~v~h~~I~~~~~~~~~~~~~~~F~s  485 (523)
                      .++.++||| .|+|++||++|.  ++++|+||||.|+  +|.|+||++.    ++.|+||+|.+.++|.++......|+|
T Consensus         8 ~l~~e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~v~H~~i~~~~~g~~~l~~~~~F~s   87 (114)
T d1blja_           8 TLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITFPT   87 (114)
T ss_dssp             CSCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETTTEEEEETTEEESS
T ss_pred             ccccCCCcCCCCCHHHHHHHHHhcCCCCceEEEeccCCCCCCeEEEEEeeccCCCEEEEEEEEEcCCCCEEecCCceECC
Confidence            688899999 999999999884  4579999999997  8999999985    356999999998877666666568999


Q ss_pred             HHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552         486 LGALVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       486 l~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      |.+||+||++++     +||+++|+.||++.
T Consensus        88 l~eLV~~y~~~~-----~gL~~~L~~PC~~~  113 (114)
T d1blja_          88 LQALVQHYSKKG-----DGLCQKLTLPCVNL  113 (114)
T ss_dssp             HHHHHHHHHHCC-----SSSSSCCCCCSCCC
T ss_pred             HHHHHHHHhhCC-----CCCCccCCccCcCc
Confidence            999999999986     89999999999864

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.7e-22  Score=163.79  Aligned_cols=84  Identities=27%  Similarity=0.597  Sum_probs=74.6

Q ss_pred             CCCccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHHHHh
Q psy8552         214 DAEWYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINYYK  292 (523)
Q Consensus       214 ~~~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~y~  292 (523)
                      ++|||||.|+|++||++|.. .++|+||||+|++.+|.|+||++.+++++||+|...++++++.+...|+||.+||+||+
T Consensus         2 s~pWy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~F~sl~~LV~~y~   81 (96)
T d1jyra_           2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHR   81 (96)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSSCEESSHHHHHHHTT
T ss_pred             CCCccCCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCceEEEEEEECCCCeEEeCCccCCCHHHHHHHHh
Confidence            57999999999999999964 58999999999988999999999999999999998655444455678999999999999


Q ss_pred             hCCcc
Q psy8552         293 HESLS  297 (523)
Q Consensus       293 ~~~~~  297 (523)
                      .+++.
T Consensus        82 ~~~l~   86 (96)
T d1jyra_          82 STSVS   86 (96)
T ss_dssp             SSCSC
T ss_pred             hCCCC
Confidence            98874

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.5e-22  Score=167.07  Aligned_cols=92  Identities=32%  Similarity=0.527  Sum_probs=82.3

Q ss_pred             Ccccc-cCCHHHHHHHh--cCCCCCeEEeecCC--CCceEEEEEE-----CCeeEEEEEEEeCCcEEEecCCCCCCCHHH
Q psy8552         419 KTWLV-RMSRAQAEALL--SGRPDGTFLIRPST--TGQYALSIVC-----SGAPKHCLVYETERGFGFAEPFNIYPSLGA  488 (523)
Q Consensus       419 ~~W~~-~isr~~Ae~~L--~~~~~G~FLvR~s~--~~~~~Ls~~~-----~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~  488 (523)
                      ++||| .|+|++||++|  .+.++|+||||.|+  +|.|+|||+.     ++.|+||+|...++|.++......|+||.+
T Consensus         1 e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~H~~i~~~~~g~~~~~~~~~F~sl~~   80 (103)
T d1qcfa2           1 EEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQE   80 (103)
T ss_dssp             STTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECTTSCEESSSSSCBSSHHH
T ss_pred             CCccCCCCCHHHHHHHHhhcCCCCCcEEEEccCCCCCCeEEEEEecCCCcCceEEEEEEEEcCCCceeecCCcccCCHHH
Confidence            48999 99999999999  45679999999998  8999999986     478999999998887777666678999999


Q ss_pred             HHHHHhhCCccccCCccceeecccccC
Q psy8552         489 LVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       489 LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      ||+||++++     +||+|+|+.||++
T Consensus        81 LV~~y~~~~-----~gL~~~L~~PC~~  102 (103)
T d1qcfa2          81 LVDHYKKGN-----DGLCQKLSVPCMS  102 (103)
T ss_dssp             HHHHHTSSC-----TTSSSCCCSBCCC
T ss_pred             HHHHHhhCC-----CCCCccCCccCCC
Confidence            999999986     8999999999975

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.3e-22  Score=168.23  Aligned_cols=94  Identities=29%  Similarity=0.413  Sum_probs=83.0

Q ss_pred             CCCCcccc-cCCHHHHHHHhcC--CCCCeEEeecCC--CCceEEEEEEC-----CeeEEEEEEEeCCcEEEecCCCCCCC
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPST--TGQYALSIVCS-----GAPKHCLVYETERGFGFAEPFNIYPS  485 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~--~~~G~FLvR~s~--~~~~~Ls~~~~-----~~v~h~~I~~~~~~~~~~~~~~~F~s  485 (523)
                      ++.++||| .|+|++||++|..  .++|+||||.|.  +|.|+||++..     ..|+||+|...++|.++......|+|
T Consensus         2 l~~~~Wy~g~i~R~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~i~h~~i~~~~~g~~~~~~~~~F~s   81 (106)
T d1o48a_           2 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNS   81 (106)
T ss_dssp             GGGSTTEEESCCHHHHHHHHCCTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSEESS
T ss_pred             cccCCccCCCCCHHHHHHHHHhcCCCCCcEEEEcccCCCCCEEEEEEecccCcccceEEEEEEEecCCCEEEcCCeeECC
Confidence            57889999 9999999999953  469999999997  89999999874     35889999998887777666678999


Q ss_pred             HHHHHHHHhhCCccccCCccceeeccccc
Q psy8552         486 LGALVLHYAANSLEEHNDDLKTTLAYPVF  514 (523)
Q Consensus       486 l~~LV~~y~~~~l~~~~~~l~~~L~~pv~  514 (523)
                      |.+||+||++++     +||+|+|+.||+
T Consensus        82 l~eLV~~y~~~~-----~gL~~~L~~pcP  105 (106)
T d1o48a_          82 LQQLVAYYSKHA-----DGLCHRLTTVCP  105 (106)
T ss_dssp             HHHHHHHHTTCC-----TTSSSCCCSBCC
T ss_pred             HHHHHHHHhhCC-----CCCCccCCCcCC
Confidence            999999999996     899999999997

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.3e-22  Score=167.15  Aligned_cols=93  Identities=27%  Similarity=0.461  Sum_probs=80.1

Q ss_pred             CCcccc-cCCHHHHHHHhc-CCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecC-----CCCCCCHHH
Q psy8552         418 EKTWLV-RMSRAQAEALLS-GRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEP-----FNIYPSLGA  488 (523)
Q Consensus       418 ~~~W~~-~isr~~Ae~~L~-~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-----~~~F~sl~~  488 (523)
                      ++|||| .|+|++||.+|. +..||+||||+|+  +|.|+||++.+++|+||+|.+.++|.++...     ...|+||.+
T Consensus         2 d~PWy~g~isR~~AE~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~~~~~~F~sl~~   81 (103)
T d1i3za_           2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIFPNLQE   81 (103)
T ss_dssp             CCTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECTTSCEEECBCTTSCCCEESSSHH
T ss_pred             CCCcccCCCCHHHHHHHHHhCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEeEEcCCCcEEEeccCCcCccccCCHHH
Confidence            468999 999999999995 5579999999997  9999999999999999999987776544322     246999999


Q ss_pred             HHHHHhhCCccccCCccceeecccccC
Q psy8552         489 LVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       489 LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      ||+||++++     +|+.|.|++||.+
T Consensus        82 LV~~y~~~~-----~gl~~~L~~P~~R  103 (103)
T d1i3za_          82 LVSKYGKPG-----QGLVVHLSNPIMR  103 (103)
T ss_dssp             HHHHTTSSS-----SSSSSCCCEECC-
T ss_pred             HHHHhhhCC-----CCCeEeCCccccC
Confidence            999999885     8999999999975

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.2e-22  Score=168.55  Aligned_cols=97  Identities=25%  Similarity=0.295  Sum_probs=82.9

Q ss_pred             CCCCCcccc-cCCHHHHHHHhc--CCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCc--E-EEe-cCCCCCCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERG--F-GFA-EPFNIYPS  485 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~--~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~--~-~~~-~~~~~F~s  485 (523)
                      .+..++||| .|+|++||++|.  +++||+||||.|+  +|.|+||++.+++++||+|...+++  + +.. +....|+|
T Consensus         6 ~h~~~~Wy~g~isR~~Ae~lL~~~g~~dG~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~F~s   85 (113)
T d2qmsa1           6 IHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTD   85 (113)
T ss_dssp             STTCCTTEEEEBCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEEESSSCEEEESSTTSSCBSS
T ss_pred             hhcCCCccCCCCCHHHHHHHHhccCCCCccEEEEeccCCCCCEEEEEEeCCeEEEEEEEEeCCCCeEEEEecCCCcccCC
Confidence            467889999 999999999995  5679999999998  7999999999999999999875433  2 222 23457999


Q ss_pred             HHHHHHHHhhCCccccCCccceeecccccCC
Q psy8552         486 LGALVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       486 l~~LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      |.+||+||++++     +|+.|.|+.||++-
T Consensus        86 l~~LI~~y~~~~-----~~L~~~L~~pc~r~  111 (113)
T d2qmsa1          86 LLQLVEFHQLNR-----GILPCLLRHCCTRV  111 (113)
T ss_dssp             HHHHHHHHTTCC-----TTSSSCCCEECCSS
T ss_pred             HHHHHHHhccCC-----CCCccccCCCCcCc
Confidence            999999999986     88999999999874

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.3e-22  Score=167.14  Aligned_cols=97  Identities=38%  Similarity=0.562  Sum_probs=83.3

Q ss_pred             CCCCCCCccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEEC------CeeEEEEEEEe-C--CeEEeCCCC
Q psy8552         210 NSLRDAEWYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKG------GTNKLIKIFHR-N--GRYGFSEPF  279 (523)
Q Consensus       210 ~~l~~~~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~~------~~v~h~~I~~~-~--~~~~~~~~~  279 (523)
                      ++++.++||||.|+|++||++|.+ .++|+||||+|++ +|.|+||+++.      +.++||+|... +  +.|++.+..
T Consensus         1 ~~l~~~~Wy~g~isR~eAe~lL~~~~~~G~FLVR~S~~-~g~y~LSv~~~~~~~~~~~i~h~~I~~~~~~~~~~~~~~~~   79 (108)
T d1luia_           1 NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYVAEKY   79 (108)
T ss_dssp             CCCTTSTTBCTTCCHHHHHHHHHHHCCTTEEEEEECCT-TTCEEEEEECSCCTTTCSCEEEEECEECCCSSCCEESSSSC
T ss_pred             CccccCCCcCCCCCHHHHHHHHHhcCCCCeEEEEecCC-CCCEEEEEEecCCcccCCceeEEEEEEecCCCceeecCCCc
Confidence            357889999999999999999964 5789999999976 89999999963      46899999863 3  347777778


Q ss_pred             ccCCHHHHHHHHhhCCcccCCCCcceeeccccc
Q psy8552         280 KFTSVVELINYYKHESLSQYNSTLDTRLLYPVS  312 (523)
Q Consensus       280 ~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~  312 (523)
                      .|+||.+||+||+.++.     ++++.|+.||+
T Consensus        80 ~F~sl~~LV~~y~~~~~-----~L~~~L~~Pv~  107 (108)
T d1luia_          80 VFDSIPLLIQYHQYNGG-----GLVTRLRYPVC  107 (108)
T ss_dssp             CBSSHHHHHHHHHTTCC-----SSSSSSSEECC
T ss_pred             ccCCHHHHHHHHhhCCC-----CCccCCCCcCC
Confidence            99999999999998874     78999999987

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.3e-22  Score=166.38  Aligned_cols=95  Identities=26%  Similarity=0.363  Sum_probs=83.5

Q ss_pred             CCCCcccc-cCCHHHHHHHhcCC-CCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEec-----CCCCCCCH
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAE-----PFNIYPSL  486 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~~-~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~-----~~~~F~sl  486 (523)
                      +++.|||| .|+|++||++|++. .+|+||||.|+  +|.|+||++.+++++||+|.+.++|+++..     ....|+||
T Consensus         1 le~~pwyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~F~sl   80 (104)
T d1d4ta_           1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKI   80 (104)
T ss_dssp             CTTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEECBCTTSCCCCBSSH
T ss_pred             CCcCCccccCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEecCCCceEEEEEEcCCCcEEEeeccCCCCcccCCH
Confidence            46789999 99999999999754 48999999998  889999999999999999999887765542     24679999


Q ss_pred             HHHHHHHhhCCccccCCccceeecccccC
Q psy8552         487 GALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       487 ~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      .+||+||++++     .|+++.|++||+|
T Consensus        81 ~~Li~~y~~~~-----~gl~~~L~~P~~r  104 (104)
T d1d4ta_          81 KNLISAFQKPD-----QGIVIPLQYPVEK  104 (104)
T ss_dssp             HHHHHHHTSSS-----SSSSSCCCEECCC
T ss_pred             HHHHHHHhhCC-----CCCcEeCCccccC
Confidence            99999999885     8999999999975

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.2e-22  Score=165.67  Aligned_cols=98  Identities=33%  Similarity=0.444  Sum_probs=86.5

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  491 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~  491 (523)
                      .++.+|||| .|+|++||++|+  .+|+||||.|+  +|.|+||++.+++++||+|...++.+ +.. ...|+||.|||+
T Consensus         3 ~l~~~pWyhG~i~R~~Ae~lL~--~~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~~~~~~~-~~~-~~~F~sl~~LV~   78 (104)
T d1mila_           3 QLRGEPWFHGKLSRREAEALLQ--LNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVV-RTK-DHRFESVSHLIS   78 (104)
T ss_dssp             STTTCTTBCSSCCHHHHHTTCC--STTEEEEEECCSSCSSEEEEEEETTEEEEEEEBCTTSSE-ECS-SCEESSHHHHHH
T ss_pred             ccccCCCcCCCCCHHHHHHHHh--cCCcEEEEecCCCCCCEEEEEEEccccceEEEEeCCCEE-EeC-CeeECCHHHHHH
Confidence            578899999 999999999996  69999999997  89999999999999999997655444 444 368999999999


Q ss_pred             HHhhCCccccCCccceeecccccCC
Q psy8552         492 HYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       492 ~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      ||+.++++....++.+.|++||+++
T Consensus        79 ~y~~~~~~~~~~~~~~~L~~Pi~R~  103 (104)
T d1mila_          79 YHMDNHLPIISAGSELCLQQPVERK  103 (104)
T ss_dssp             HHHHHTCCEEETTEEECCCEECCCC
T ss_pred             HHhhCCCCcccCCcceEeCCCcCCc
Confidence            9999988766778899999999875

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.9e-22  Score=162.81  Aligned_cols=99  Identities=23%  Similarity=0.406  Sum_probs=85.7

Q ss_pred             CCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEE-eCCeEEeC-CCCccCCHHHHH
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFH-RNGRYGFS-EPFKFTSVVELI  288 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~-~~~~~~~~-~~~~F~sl~~LV  288 (523)
                      +-...+||||.|+|++||++|.+.++|+||||.|...++ |+||++.++.++|++|.. .+|.|++. ....|+||.+||
T Consensus         5 ~~~~~pWy~g~isR~eAe~lL~~~~~G~FLvR~S~~~~~-y~Lsv~~~~~~~h~~I~~~~~g~~~~~~~~~~F~sl~eLV   83 (106)
T d2cs0a1           5 QDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALV   83 (106)
T ss_dssp             SSSCCSSBCSSCCHHHHHHHHHTSCTTCEEEEECSSSSS-EEEEECCSSSCEEEEEEECTTSCEECTTCSCCBSSHHHHH
T ss_pred             CCCCCCCccCCCCHHHHHHHHcCCCCCcEEEEecCCCCC-EEEEEEecCCceeEEEEEcCCCCEEEecCCccCCCHHHHH
Confidence            334579999999999999999999999999999987555 999999999999999987 45667775 446799999999


Q ss_pred             HHHhhCCcccCCCCcceeeccccccC
Q psy8552         289 NYYKHESLSQYNSTLDTRLLYPVSRF  314 (523)
Q Consensus       289 ~~y~~~~~~~~~~~l~~~L~~p~~~~  314 (523)
                      +||+.+++.    ++++.|++||+++
T Consensus        84 ~~y~~~~~~----~~~~~L~~P~~~~  105 (106)
T d2cs0a1          84 TFHQQKPIE----PRRELLTQPCRQK  105 (106)
T ss_dssp             HHHTTSCCS----SCCCCCCSBCCCS
T ss_pred             HHHHHCCCC----CccCcccCcCCCC
Confidence            999998873    6788999999874

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.5e-22  Score=163.09  Aligned_cols=93  Identities=32%  Similarity=0.525  Sum_probs=81.9

Q ss_pred             CCCCCcccc-cCCHHHHHHHhc--CCCCCeEEeecCC--CCceEEEEEE-----CCeeEEEEEEEeCCcEEEecCCCCCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPST--TGQYALSIVC-----SGAPKHCLVYETERGFGFAEPFNIYP  484 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~--~~~~G~FLvR~s~--~~~~~Ls~~~-----~~~v~h~~I~~~~~~~~~~~~~~~F~  484 (523)
                      +++.++||| .|+|++||++|.  +.++|+||||.|+  +|.|+||++.     ++.|+||+|...++|.++......|+
T Consensus         2 ~l~~~~Wy~g~i~R~eAe~~L~~~g~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~h~~i~~~~~g~~~~~~~~~F~   81 (104)
T d1g83a2           2 SIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFE   81 (104)
T ss_dssp             SGGGSSSBCTTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTCEEEEEEEECSSSCEEEEEEEEEECTTSCEEETTTEEES
T ss_pred             ccccCCCcCCCCCHHHHHHHHHhcCCCCCcEEEeccCCCCCCeEEEEEEeecCcCCeEEEEEEEEcCCCCEEecCCcccC
Confidence            367889999 999999999995  3469999999998  8999999986     46799999999887766666667899


Q ss_pred             CHHHHHHHHhhCCccccCCccceeeccc
Q psy8552         485 SLGALVLHYAANSLEEHNDDLKTTLAYP  512 (523)
Q Consensus       485 sl~~LV~~y~~~~l~~~~~~l~~~L~~p  512 (523)
                      ||.+||+||++++     +||+|+|++|
T Consensus        82 sl~~LV~~y~~~~-----~gL~~~L~~P  104 (104)
T d1g83a2          82 TLQQLVQHYSERA-----AGLSSRLVVP  104 (104)
T ss_dssp             SHHHHHHHHHHCC-----TTSSSCCCCC
T ss_pred             CHHHHHHHHhhCC-----CCCceeCCCC
Confidence            9999999999986     8999999987

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.3e-21  Score=162.59  Aligned_cols=95  Identities=28%  Similarity=0.428  Sum_probs=82.4

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcC-CCCCeEEeecCC-CCceEEEEEEC------CeeEEEEEEEeCCc--EEEecCCCCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPST-TGQYALSIVCS------GAPKHCLVYETERG--FGFAEPFNIY  483 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~-~~~G~FLvR~s~-~~~~~Ls~~~~------~~v~h~~I~~~~~~--~~~~~~~~~F  483 (523)
                      .++.++||| .|+|++||++|++ .++|+||||+|+ +|.|+||+++.      +.++||+|....++  .++......|
T Consensus         2 ~l~~~~Wy~g~isR~eAe~lL~~~~~~G~FLVR~S~~~g~y~LSv~~~~~~~~~~~i~h~~I~~~~~~~~~~~~~~~~~F   81 (108)
T d1luia_           2 NLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYVAEKYVF   81 (108)
T ss_dssp             CCTTSTTBCTTCCHHHHHHHHHHHCCTTEEEEEECCTTTCEEEEEECSCCTTTCSCEEEEECEECCCSSCCEESSSSCCB
T ss_pred             ccccCCCcCCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCEEEEEEecCCcccCCceeEEEEEEecCCCceeecCCCccc
Confidence            478889999 9999999999954 468999999999 99999999873      46899999987654  4566666799


Q ss_pred             CCHHHHHHHHhhCCccccCCccceeeccccc
Q psy8552         484 PSLGALVLHYAANSLEEHNDDLKTTLAYPVF  514 (523)
Q Consensus       484 ~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~  514 (523)
                      +||.+||+||++++     +||+|+|++||+
T Consensus        82 ~sl~~LV~~y~~~~-----~~L~~~L~~Pv~  107 (108)
T d1luia_          82 DSIPLLIQYHQYNG-----GGLVTRLRYPVC  107 (108)
T ss_dssp             SSHHHHHHHHHTTC-----CSSSSSSSEECC
T ss_pred             CCHHHHHHHHhhCC-----CCCccCCCCcCC
Confidence            99999999999986     899999999996

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.4e-21  Score=161.33  Aligned_cols=96  Identities=23%  Similarity=0.513  Sum_probs=85.8

Q ss_pred             CccccCCCHHHHHHHhcC-CCCceEEEEcCCCCCCcEEEEEEEC----------CeeEEEEEEEeCCeEEeCCCCccCCH
Q psy8552         216 EWYWGDISRDDVNDKLAD-TADGTFLVRDTSTKNGEYTLTLRKG----------GTNKLIKIFHRNGRYGFSEPFKFTSV  284 (523)
Q Consensus       216 ~wyhg~isr~~Ae~lL~~-~~~G~FLVR~s~~~~g~f~LSv~~~----------~~v~h~~I~~~~~~~~~~~~~~F~sl  284 (523)
                      .||||.|+|++||++|++ .++|+||||+|++.+|.|+||++..          +.++|+.|...+++|++.+...|+||
T Consensus         1 rWyhG~i~R~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~F~sl   80 (108)
T d2shpa3           1 RWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGERFDSL   80 (108)
T ss_dssp             TTBCCSCCHHHHHHHHHHTCCTTEEEEEECSSSTTCEEEEEEECC-----CCCCCEEEEEEEEEETTEEESSSSCCBSSH
T ss_pred             CCCcCCCCHHHHHHHHhhcCCCCeEEEEecCCCCCCeEEEEEecCccccccccccceeeEEEEeCCCceEeCCCcccCCH
Confidence            499999999999999975 4789999999998899999999975          45789999988999999888999999


Q ss_pred             HHHHHHHhhCCcccCCCCcceeeccccc
Q psy8552         285 VELINYYKHESLSQYNSTLDTRLLYPVS  312 (523)
Q Consensus       285 ~~LV~~y~~~~~~~~~~~l~~~L~~p~~  312 (523)
                      .+||+||+.+++.. .+|+.+.|++||.
T Consensus        81 ~~LV~~y~~~~l~~-~~g~~~~L~~Pv~  107 (108)
T d2shpa3          81 TDLVEHYKKNPMVE-TLGTVLQLKQPLN  107 (108)
T ss_dssp             HHHHHHHHHSCCBC-TTSCBCCCCEECC
T ss_pred             HHHHHHHhhCCCCC-CCCceEEcCCCCc
Confidence            99999999998765 4678899999985

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.1e-21  Score=163.67  Aligned_cols=92  Identities=35%  Similarity=0.558  Sum_probs=79.1

Q ss_pred             CccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCe-----------------EEeCCC
Q psy8552         216 EWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGR-----------------YGFSEP  278 (523)
Q Consensus       216 ~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~-----------------~~~~~~  278 (523)
                      .||||.|+|++||++|.+.++|+||||+|+..+|.|+||++.+++++||+|...+++                 +++.++
T Consensus         1 sWy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~~~~~LS~~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (109)
T d2eyva1           1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGD   80 (109)
T ss_dssp             TSCCBCCCHHHHHHHCSSCSTTCEEEECCCSSSSCEEEEEEETTEEEEEEEECCCCSSCCCSSSSCCCCSCCCCCEEETT
T ss_pred             CCCCCCCCHHHHHHHhcCCCCCeEEeeecCCCCCCEEEEEEECCEEEEEEEEEcCCcceeeccccccccccccceEEeCC
Confidence            599999999999999998899999999999889999999999999999999975433                 223345


Q ss_pred             CccCCHHHHHHHHhhCCcccCCCCcceeecccccc
Q psy8552         279 FKFTSVVELINYYKHESLSQYNSTLDTRLLYPVSR  313 (523)
Q Consensus       279 ~~F~sl~~LV~~y~~~~~~~~~~~l~~~L~~p~~~  313 (523)
                      ..|+||.+||+||+.+.+      ..+.|+.||+|
T Consensus        81 ~~F~sl~~LV~~y~~~~l------~~~~L~~P~~r  109 (109)
T d2eyva1          81 QEFDSLPALLEFYKIHYL------DTTTLIEPVSR  109 (109)
T ss_dssp             EEESSHHHHHHHSSSSCS------SSSCCCSBCCS
T ss_pred             eeeCCHHHHHHHHhhCcC------CCCccCCcCCC
Confidence            689999999999999875      24568999875

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.7e-21  Score=156.35  Aligned_cols=85  Identities=32%  Similarity=0.491  Sum_probs=78.5

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  491 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~  491 (523)
                      +++.++||| .|+|++||++|.++++|+||||.|+  +|.|+||++.+++++||+|.++++|+++... ..|+||.+||+
T Consensus         2 d~~~~~Wy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~-~~F~sl~~LV~   80 (97)
T d1r1qa_           2 DIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWT-EKFPSLNKLVD   80 (97)
T ss_dssp             CCSCCTTBCTTCCHHHHHHHHHTSCTTCEEEEECSSSTTCEEEEEECSSSEEEEECEECTTCCEESSS-CCBSSHHHHHH
T ss_pred             CcccCCccCCCCCHHHHHHHHhcCCCCCEEEeecCCCCCCEEEEEEecCCeEEEEEEEcCCCeEEeCC-CCcCCHHHHHH
Confidence            567889999 9999999999998899999999997  8999999999999999999999988877765 78999999999


Q ss_pred             HHhhCCccc
Q psy8552         492 HYAANSLEE  500 (523)
Q Consensus       492 ~y~~~~l~~  500 (523)
                      ||++++|..
T Consensus        81 ~y~~~~l~~   89 (97)
T d1r1qa_          81 YYRTTSISK   89 (97)
T ss_dssp             HTTTSCSCS
T ss_pred             HHccCCcCC
Confidence            999998764

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=2.2e-22  Score=160.24  Aligned_cols=82  Identities=23%  Similarity=0.444  Sum_probs=70.2

Q ss_pred             CCCCCccccCCCHHHHHHHhcCC---CCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHH
Q psy8552         212 LRDAEWYWGDISRDDVNDKLADT---ADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELI  288 (523)
Q Consensus       212 l~~~~wyhg~isr~~Ae~lL~~~---~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV  288 (523)
                      +..+|||||.|+|++||++|...   ++|+||||+|++.+|.|+|||+.+++++|++|...+++|++.+...|+||.+||
T Consensus         2 l~~~pWyhg~isR~~Ae~lL~~~~~~~dG~FLvR~S~~~~g~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV   81 (86)
T d1rpya_           2 LSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSLNGHGQCHVQHLWFQSVFDML   81 (86)
T ss_dssp             GGGSTTBCTTCCHHHHHHHHHTTGGGGTTCEEEEECSSSTTCEEEEEEETTEEEEEEC----CCCHHHHHHHHHHHHHHH
T ss_pred             CccCcccCCCCCHHHHHHHHHhCCCCCCceEEEEecCCCCCcEEEEEEECCceEEEEEEEcCCceEEeCCCeeCCHHHHH
Confidence            56789999999999999999763   579999999998899999999999999999999866666665568899999999


Q ss_pred             HHHhh
Q psy8552         289 NYYKH  293 (523)
Q Consensus       289 ~~y~~  293 (523)
                      +||++
T Consensus        82 ~~y~t   86 (86)
T d1rpya_          82 RHFHT   86 (86)
T ss_dssp             HHHTC
T ss_pred             HhhcC
Confidence            99974

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=4.6e-22  Score=166.43  Aligned_cols=100  Identities=29%  Similarity=0.544  Sum_probs=90.2

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC---CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST---TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  490 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~---~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV  490 (523)
                      .+..++||| .|+|++||++|.++++|+||||.|+   ++.|+||++.++.++||+|...++++++.+ ...|+||.+||
T Consensus         7 ~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~~ls~~~~~~~~H~~I~~~~~~~~~~~-~~~F~sl~~LV   85 (111)
T d1fu6a_           7 SLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKYGFSD-PLTFNSVVELI   85 (111)
T ss_dssp             CCSCCSSCCSSCCSHHHHHHSSSCSSCCCCCBSSCCSSSCCSBCEEEETTEEEECCCCCTTTCCCTTT-TSCCCCTTHHH
T ss_pred             ccCcCcCCCCCCCHHHHHHHhCcCCCCEEEEEeccCCCCccEEEEEecCCceEEEEEEEcCCeEEECC-CcccCCHHHHH
Confidence            578899999 9999999999998889999999987   568999999999999999998776666654 47899999999


Q ss_pred             HHHhhCCccccCCccceeecccccC
Q psy8552         491 LHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       491 ~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      +||+++++.....+++++|++||.+
T Consensus        86 ~~y~~~~l~~~~~~l~~~L~~Pv~r  110 (111)
T d1fu6a_          86 NHYRNESLAQYNPKLDVKLLYPVSK  110 (111)
T ss_dssp             HHHHTTCSTTTCSSCCCCSCCCCCC
T ss_pred             HHHhhCcCCccCCCCccccCccccC
Confidence            9999999988788999999999976

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.7e-21  Score=157.41  Aligned_cols=86  Identities=29%  Similarity=0.655  Sum_probs=78.0

Q ss_pred             CCCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCC-------CCccC
Q psy8552         210 NSLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSE-------PFKFT  282 (523)
Q Consensus       210 ~~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~-------~~~F~  282 (523)
                      ..++.++||||.|+|++||++|.+.++|+||||.|+..+|.|+||++.+++++|++|...+++|.++.       ...|+
T Consensus        10 ~~l~~~~Wy~g~i~R~~Ae~~L~~~~~GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~F~   89 (103)
T d2c9wa2          10 RELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIICVKSKLKQFD   89 (103)
T ss_dssp             HHHHHTSCBCTTCCHHHHHHHHTTSCTTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEETTEEEECTTTTTGGGCCCBS
T ss_pred             HHHhhCCCcCCCCCHHHHHHHhcCCCCCceEEeccCCCCCCEEEEEEECCEEEEEEEEEcCCeEeeCCccccccCCCccC
Confidence            45677899999999999999999989999999999998999999999999999999999899998854       35699


Q ss_pred             CHHHHHHHHhhCC
Q psy8552         283 SVVELINYYKHES  295 (523)
Q Consensus       283 sl~~LV~~y~~~~  295 (523)
                      ||.+||+||+..+
T Consensus        90 sl~~LI~~y~~~s  102 (103)
T d2c9wa2          90 SVVHLIDYYVQMC  102 (103)
T ss_dssp             CHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998753

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=9.9e-21  Score=156.69  Aligned_cols=97  Identities=29%  Similarity=0.349  Sum_probs=84.9

Q ss_pred             CCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC-CCceEEEEEECCeeEEEEEEEeCCcEEEe-cCCCCCCCHHHHHHH
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST-TGQYALSIVCSGAPKHCLVYETERGFGFA-EPFNIYPSLGALVLH  492 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~-~~~~~F~sl~~LV~~  492 (523)
                      ...++||| .|+|++||++|.++++|+||||.|. ...|+||++.++.++||+|...++|.++. .....|+||.+||+|
T Consensus         6 ~~~~pWy~g~isR~eAe~lL~~~~~G~FLvR~S~~~~~y~Lsv~~~~~~~h~~I~~~~~g~~~~~~~~~~F~sl~eLV~~   85 (106)
T d2cs0a1           6 DGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVGYTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALVTF   85 (106)
T ss_dssp             SSCCSSBCSSCCHHHHHHHHHTSCTTCEEEEECSSSSSEEEEECCSSSCEEEEEEECTTSCEECTTCSCCBSSHHHHHHH
T ss_pred             CCCCCCccCCCCHHHHHHHHcCCCCCcEEEEecCCCCCEEEEEEecCCceeEEEEEcCCCCEEEecCCccCCCHHHHHHH
Confidence            34579999 9999999999998889999999999 55699999999999999999988875554 444679999999999


Q ss_pred             HhhCCccccCCccceeecccccCC
Q psy8552         493 YAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       493 y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      |+++++    .++++.|++||+++
T Consensus        86 y~~~~~----~~~~~~L~~P~~~~  105 (106)
T d2cs0a1          86 HQQKPI----EPRRELLTQPCRQK  105 (106)
T ss_dssp             HTTSCC----SSCCCCCCSBCCCS
T ss_pred             HHHCCC----CCccCcccCcCCCC
Confidence            999974    46789999999876

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.1e-20  Score=153.09  Aligned_cols=82  Identities=33%  Similarity=0.477  Sum_probs=74.2

Q ss_pred             CCcccc-cCCHHHHHHHhc-CCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHHHH
Q psy8552         418 EKTWLV-RMSRAQAEALLS-GRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY  493 (523)
Q Consensus       418 ~~~W~~-~isr~~Ae~~L~-~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y  493 (523)
                      ++|||| .|+|++||++|. +.++|+||||.|+  +|.|+||++.+++|+||+|.++++|+++... ..|+||.+||+||
T Consensus         2 s~pWy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~-~~F~sl~~LV~~y   80 (96)
T d1jyra_           2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV-VKFNSLNELVDYH   80 (96)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSS-CEESSHHHHHHHT
T ss_pred             CCCccCCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCceEEEEEEECCCCeEEeCC-ccCCCHHHHHHHH
Confidence            679999 999999999995 4479999999998  8899999999999999999999888777664 6899999999999


Q ss_pred             hhCCccc
Q psy8552         494 AANSLEE  500 (523)
Q Consensus       494 ~~~~l~~  500 (523)
                      +++++..
T Consensus        81 ~~~~l~~   87 (96)
T d1jyra_          81 RSTSVSR   87 (96)
T ss_dssp             TSSCSCS
T ss_pred             hhCCCCC
Confidence            9999764

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.9e-21  Score=159.56  Aligned_cols=99  Identities=25%  Similarity=0.349  Sum_probs=84.4

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCC---CCCCCHHH
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPF---NIYPSLGA  488 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~---~~F~sl~~  488 (523)
                      .++.++||| .|+|++||++|+++++|+||||.|+  ++.|+||++.+++++||+|...++++.+....   ..|+||.+
T Consensus         7 ~l~~~~Wy~g~isR~~Ae~lL~~~~~GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~~~~l~~~~~~~~~F~sl~~   86 (112)
T d2izva2           7 QINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPDITG   86 (112)
T ss_dssp             HHHHCTTEEEECCHHHHHHHHTTCCTTEEEEEECSSTTCSEEEEEEETTEEEEEECEEETTEEESCTTCTTSCCBSSHHH
T ss_pred             HhccCCCcCCCCCHHHHHHHHccCCCCcEEEeecCCCCCCeEEEEEecCCceEEEEEEeCCeEEEeecccCcccCCCHHH
Confidence            467789999 9999999999998899999999998  88999999999999999999988877775432   36999999


Q ss_pred             HHHHHhhCCccccCCccceeecccccCC
Q psy8552         489 LVLHYAANSLEEHNDDLKTTLAYPVFAP  516 (523)
Q Consensus       489 LV~~y~~~~l~~~~~~l~~~L~~pv~~~  516 (523)
                      ||+||+++++..   .....|+.||+++
T Consensus        87 LV~~Y~~~~~~~---~~~~llt~P~~r~  111 (112)
T d2izva2          87 LLEHYKDPSACM---FFEPLLSTPLIRT  111 (112)
T ss_dssp             HHHHTCCGGGCC---TTSCCCCEECCCC
T ss_pred             HHHHHhcccccc---cCccccCCCCCCC
Confidence            999999987432   2245699999764

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-19  Score=151.08  Aligned_cols=93  Identities=28%  Similarity=0.450  Sum_probs=81.3

Q ss_pred             cccc-cCCHHHHHHHhcCC-CCCeEEeecCC--CCceEEEEEEC----------CeeEEEEEEEeCCcEEEecCCCCCCC
Q psy8552         420 TWLV-RMSRAQAEALLSGR-PDGTFLIRPST--TGQYALSIVCS----------GAPKHCLVYETERGFGFAEPFNIYPS  485 (523)
Q Consensus       420 ~W~~-~isr~~Ae~~L~~~-~~G~FLvR~s~--~~~~~Ls~~~~----------~~v~h~~I~~~~~~~~~~~~~~~F~s  485 (523)
                      -||| .|+|++||++|+++ .+|+||||.|+  +|.|+||++..          +.++|+.|...++++++.+ ...|+|
T Consensus         1 rWyhG~i~R~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~-~~~F~s   79 (108)
T d2shpa3           1 RWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGG-GERFDS   79 (108)
T ss_dssp             TTBCCSCCHHHHHHHHHHTCCTTEEEEEECSSSTTCEEEEEEECC-----CCCCCEEEEEEEEEETTEEESSS-SCCBSS
T ss_pred             CCCcCCCCHHHHHHHHhhcCCCCeEEEEecCCCCCCeEEEEEecCccccccccccceeeEEEEeCCCceEeCC-CcccCC
Confidence            3999 99999999999755 59999999998  89999999985          4578999988777766655 578999


Q ss_pred             HHHHHHHHhhCCccccCCccceeeccccc
Q psy8552         486 LGALVLHYAANSLEEHNDDLKTTLAYPVF  514 (523)
Q Consensus       486 l~~LV~~y~~~~l~~~~~~l~~~L~~pv~  514 (523)
                      |.+||+||+++++.. .+|+.++|++||.
T Consensus        80 l~~LV~~y~~~~l~~-~~g~~~~L~~Pv~  107 (108)
T d2shpa3          80 LTDLVEHYKKNPMVE-TLGTVLQLKQPLN  107 (108)
T ss_dssp             HHHHHHHHHHSCCBC-TTSCBCCCCEECC
T ss_pred             HHHHHHHHhhCCCCC-CCCceEEcCCCCc
Confidence            999999999999876 5889999999995

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.7e-20  Score=152.70  Aligned_cols=90  Identities=33%  Similarity=0.479  Sum_probs=76.7

Q ss_pred             cccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEe----------------cCC
Q psy8552         420 TWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFA----------------EPF  480 (523)
Q Consensus       420 ~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~----------------~~~  480 (523)
                      .||| .|+|++||++|.++++|+||||.|+  +|.|+||++.+++++||+|...++++.+.                ...
T Consensus         1 sWy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~~~~~LS~~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (109)
T d2eyva1           1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGD   80 (109)
T ss_dssp             TSCCBCCCHHHHHHHCSSCSTTCEEEECCCSSSSCEEEEEEETTEEEEEEEECCCCSSCCCSSSSCCCCSCCCCCEEETT
T ss_pred             CCCCCCCCHHHHHHHhcCCCCCeEEeeecCCCCCCEEEEEEECCEEEEEEEEEcCCcceeeccccccccccccceEEeCC
Confidence            4999 9999999999998889999999998  89999999999999999999876553222                123


Q ss_pred             CCCCCHHHHHHHHhhCCccccCCccceeecccccC
Q psy8552         481 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA  515 (523)
Q Consensus       481 ~~F~sl~~LV~~y~~~~l~~~~~~l~~~L~~pv~~  515 (523)
                      ..|+||.+||+||+.+++.      .++|.+||++
T Consensus        81 ~~F~sl~~LV~~y~~~~l~------~~~L~~P~~r  109 (109)
T d2eyva1          81 QEFDSLPALLEFYKIHYLD------TTTLIEPVSR  109 (109)
T ss_dssp             EEESSHHHHHHHSSSSCSS------SSCCCSBCCS
T ss_pred             eeeCCHHHHHHHHhhCcCC------CCccCCcCCC
Confidence            4799999999999998643      5679999975

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=6.7e-19  Score=144.81  Aligned_cols=83  Identities=25%  Similarity=0.388  Sum_probs=73.8

Q ss_pred             CCCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecC------CCCCCC
Q psy8552         415 ESGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEP------FNIYPS  485 (523)
Q Consensus       415 ~~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~------~~~F~s  485 (523)
                      .++.++||| .|+|++||.+|.++++|+||||.|+  +|.|+||++.++.++|++|...++++.+...      ...|+|
T Consensus        11 ~l~~~~Wy~g~i~R~~Ae~~L~~~~~GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~F~s   90 (103)
T d2c9wa2          11 ELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIICVKSKLKQFDS   90 (103)
T ss_dssp             HHHHTSCBCTTCCHHHHHHHHTTSCTTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEETTEEEECTTTTTGGGCCCBSC
T ss_pred             HHhhCCCcCCCCCHHHHHHHhcCCCCCceEEeccCCCCCCEEEEEEECCEEEEEEEEEcCCeEeeCCccccccCCCccCC
Confidence            366789999 9999999999998899999999998  8899999999999999999998877777542      357999


Q ss_pred             HHHHHHHHhhCC
Q psy8552         486 LGALVLHYAANS  497 (523)
Q Consensus       486 l~~LV~~y~~~~  497 (523)
                      |.+||+||++.+
T Consensus        91 l~~LI~~y~~~s  102 (103)
T d2c9wa2          91 VVHLIDYYVQMC  102 (103)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhC
Confidence            999999999864

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=6.7e-20  Score=145.59  Aligned_cols=79  Identities=23%  Similarity=0.384  Sum_probs=67.2

Q ss_pred             CCCCcccc-cCCHHHHHHHhcCC---CCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHH
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSGR---PDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGAL  489 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~~---~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~L  489 (523)
                      +..+|||| .|+|++||++|...   +||+||||.|+  +|.|+||++.+++++||+|..+++|+++... ..|+||.+|
T Consensus         2 l~~~pWyhg~isR~~Ae~lL~~~~~~~dG~FLvR~S~~~~g~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~-~~F~sl~~L   80 (86)
T d1rpya_           2 LSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSLNGHGQCHVQH-LWFQSVFDM   80 (86)
T ss_dssp             GGGSTTBCTTCCHHHHHHHHHTTGGGGTTCEEEEECSSSTTCEEEEEEETTEEEEEEC----CCCHHHHH-HHHHHHHHH
T ss_pred             CccCcccCCCCCHHHHHHHHHhCCCCCCceEEEEecCCCCCcEEEEEEECCceEEEEEEEcCCceEEeCC-CeeCCHHHH
Confidence            56789999 99999999999653   58999999997  8999999999999999999998888777664 689999999


Q ss_pred             HHHHhh
Q psy8552         490 VLHYAA  495 (523)
Q Consensus       490 V~~y~~  495 (523)
                      |+||+.
T Consensus        81 V~~y~t   86 (86)
T d1rpya_          81 LRHFHT   86 (86)
T ss_dssp             HHHHTC
T ss_pred             HHhhcC
Confidence            999974

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.7e-18  Score=147.86  Aligned_cols=82  Identities=27%  Similarity=0.517  Sum_probs=69.6

Q ss_pred             CCCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHH-
Q psy8552         211 SLRDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELIN-  289 (523)
Q Consensus       211 ~l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~-  289 (523)
                      .+...+||||.|+|++||++|.+ .+|+||||+|++.+|.|+|||+.+++++||+|.+ +|++++.+ ..|+|+.+||+ 
T Consensus        31 ~~~~~~wyhG~isR~eAe~lL~~-~dGsFLVR~S~~~~g~y~LSv~~~~~v~H~~I~~-~g~~~~~~-~~F~sl~eLV~d  107 (141)
T d1xa6a2          31 PKYYGREFHGIISREQADELLGG-VEGAYILRESQRQPGCYTLALRFGNQTLNYRLFH-DGKHFVGE-KRFESIHDLVTD  107 (141)
T ss_dssp             SCSSCSSEEEECCHHHHHHHHCS-CTTBEEEEECSSSTTCEEEEEEETTEEEECCCEE-SSSEECSS-SCCCCSSHHHHH
T ss_pred             cccccceeeccCCHHHHHHHHcC-CCCeEEEEecCCCCCCEEEEEEECCEEEEEEEEE-CCCEEECC-CeECCHHHHHhh
Confidence            34556899999999999999976 5799999999988999999999999999999986 56666654 68999999885 


Q ss_pred             ----HHhhCC
Q psy8552         290 ----YYKHES  295 (523)
Q Consensus       290 ----~y~~~~  295 (523)
                          +|+...
T Consensus       108 gLv~~~~~~~  117 (141)
T d1xa6a2         108 GLITLYIETK  117 (141)
T ss_dssp             HHHHHHHHHS
T ss_pred             hhhhhhcccc
Confidence                565544

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.8e-17  Score=138.26  Aligned_cols=99  Identities=19%  Similarity=0.290  Sum_probs=77.5

Q ss_pred             CCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHH-
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL-  491 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~-  491 (523)
                      +...+||| .|+|++||.+|.+ .||+||||.|+  +|.|+||++.+++|+||+|.+++ ++++ .. ..|+|+.+||+ 
T Consensus        32 ~~~~~wyhG~isR~eAe~lL~~-~dGsFLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~g-~~~~-~~-~~F~sl~eLV~d  107 (141)
T d1xa6a2          32 KYYGREFHGIISREQADELLGG-VEGAYILRESQRQPGCYTLALRFGNQTLNYRLFHDG-KHFV-GE-KRFESIHDLVTD  107 (141)
T ss_dssp             CSSCSSEEEECCHHHHHHHHCS-CTTBEEEEECSSSTTCEEEEEEETTEEEECCCEESS-SEEC-SS-SCCCCSSHHHHH
T ss_pred             ccccceeeccCCHHHHHHHHcC-CCCeEEEEecCCCCCCEEEEEEECCEEEEEEEEECC-CEEE-CC-CeECCHHHHHhh
Confidence            56668999 9999999999974 58999999997  89999999999999999998743 4444 33 58999999874 


Q ss_pred             ----HHhhCCccccCCccceeecccccCCCCCCc
Q psy8552         492 ----HYAANSLEEHNDDLKTTLAYPVFAPASGMT  521 (523)
Q Consensus       492 ----~y~~~~l~~~~~~l~~~L~~pv~~~~~~~~  521 (523)
                          +|+.....   ..+...++.||..+.|-++
T Consensus       108 gLv~~~~~~~~~---~~~~~~~t~p~~~~~p~~~  138 (141)
T d1xa6a2         108 GLITLYIETKAA---EYISKMTTNPIYEHIGYAT  138 (141)
T ss_dssp             HHHHHHHHHSCH---HHHHHTTSSCCGGGSSSSS
T ss_pred             hhhhhhcccccc---cccccccCccccccCCcee
Confidence                67765422   1234557788888777554

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.35  E-value=2.6e-13  Score=115.43  Aligned_cols=74  Identities=16%  Similarity=0.266  Sum_probs=61.8

Q ss_pred             CCCCccccCCCHHHHHHHhcCCCCceEEEEcCCCCCCcEEEEEEEC---CeeEEEEEEEeCCeEEeCCCCccCCHHHHHH
Q psy8552         213 RDAEWYWGDISRDDVNDKLADTADGTFLVRDTSTKNGEYTLTLRKG---GTNKLIKIFHRNGRYGFSEPFKFTSVVELIN  289 (523)
Q Consensus       213 ~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~~g~f~LSv~~~---~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~  289 (523)
                      -...||||.|+|++||++|++.++|+||||.|++.+|.|+||++..   ++++||+|...++      ...|.++.+++.
T Consensus         7 w~~~~~~G~isr~~ae~~L~~~~~GtFLvR~S~s~~g~~~ls~~~~~~~~~v~h~~i~~~~~------~~~~~sl~d~l~   80 (131)
T d1uura3           7 WQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDT------AAAKKTFPDFLS   80 (131)
T ss_dssp             HHHTSSCBSCCHHHHHHTTSSCCTTCEEEEECSSSTTCEEEEEECSSSSCCEEEEECCGGGS------BTTTBCHHHHHT
T ss_pred             hhCCcEEccCCHHHHHHHHhcCCCCeEEEEecCCCCCcEEEEEEEecCCCcEEEEEEeecCC------CcccccHHHHHH
Confidence            3458999999999999999998999999999998899999999964   6799999965333      245788888776


Q ss_pred             HHh
Q psy8552         290 YYK  292 (523)
Q Consensus       290 ~y~  292 (523)
                      .|.
T Consensus        81 ~~~   83 (131)
T d1uura3          81 EHS   83 (131)
T ss_dssp             TCT
T ss_pred             hHH
Confidence            554

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=4.5e-14  Score=120.33  Aligned_cols=83  Identities=25%  Similarity=0.305  Sum_probs=69.7

Q ss_pred             CCCCCccccCCCHHHHHHHhcCCCCceEEEEcCCC-CCCcEEEEEEECCeeEEEEEEEeCCeEEeCCCCccCCHHHHHHH
Q psy8552         212 LRDAEWYWGDISRDDVNDKLADTADGTFLVRDTST-KNGEYTLTLRKGGTNKLIKIFHRNGRYGFSEPFKFTSVVELINY  290 (523)
Q Consensus       212 l~~~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~-~~g~f~LSv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~~  290 (523)
                      +-...||||.|+|++||++|.+.++|+||||.|++ ..|.|+||++.++...|++|..... |. .+.-.|.||.|+|.|
T Consensus         4 lW~~gw~~G~isr~~a~~~L~~~~~GtFLvR~S~~s~~G~~tis~~~~~~~~~~~i~~~~p-~t-~~dl~~~sL~dlI~~   81 (141)
T d1bg1a3           4 LWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVEP-YT-KQQLNNMSFAEIIMG   81 (141)
T ss_dssp             HHHSSCCCBCCCTTGGGTTTTTSCTTCBCEEECSSCSSCCEEECCCCSSSCSSCCCCCCCC-BC-GGGGTSSCHHHHTTS
T ss_pred             eecCCeEEEeCCHHHHHHHhhCCCCCeEEEEecCCccCCCEEEEEEecCcCCceEEeecCC-ee-cCccccCCHHHHHHh
Confidence            44578999999999999999999999999999984 5899999999999999999875332 43 334679999999999


Q ss_pred             HhhCCc
Q psy8552         291 YKHESL  296 (523)
Q Consensus       291 y~~~~~  296 (523)
                      |+....
T Consensus        82 y~~~~~   87 (141)
T d1bg1a3          82 YKIMDA   87 (141)
T ss_dssp             CCCBCT
T ss_pred             hhhhcc
Confidence            986554

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.08  E-value=4.6e-11  Score=101.29  Aligned_cols=90  Identities=18%  Similarity=0.232  Sum_probs=67.9

Q ss_pred             CCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC--CCceEEEEEEC---CeeEEEEEEEeCCcEEEecCCCCCCCHHHHH
Q psy8552         417 GEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCS---GAPKHCLVYETERGFGFAEPFNIYPSLGALV  490 (523)
Q Consensus       417 ~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~--~~~~~Ls~~~~---~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV  490 (523)
                      ....||| .|+|++||++|+++++|+||||.|+  +|.|+||++..   ++|+||+|...+++       ..|.++.++|
T Consensus         7 w~~~~~~G~isr~~ae~~L~~~~~GtFLvR~S~s~~g~~~ls~~~~~~~~~v~h~~i~~~~~~-------~~~~sl~d~l   79 (131)
T d1uura3           7 WQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDTA-------AAKKTFPDFL   79 (131)
T ss_dssp             HHHTSSCBSCCHHHHHHTTSSCCTTCEEEEECSSSTTCEEEEEECSSSSCCEEEEECCGGGSB-------TTTBCHHHHH
T ss_pred             hhCCcEEccCCHHHHHHHHhcCCCCeEEEEecCCCCCcEEEEEEEecCCCcEEEEEEeecCCC-------cccccHHHHH
Confidence            4457999 9999999999998899999999997  89999999974   78999999865532       3678998888


Q ss_pred             HHHhhCCc----cccCCccceeecccc
Q psy8552         491 LHYAANSL----EEHNDDLKTTLAYPV  513 (523)
Q Consensus       491 ~~y~~~~l----~~~~~~l~~~L~~pv  513 (523)
                      ..|.....    .....+..+.|..|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~Pk  106 (131)
T d1uura3          80 SEHSQFVNLLQWTKDTNGAPRFLKLHK  106 (131)
T ss_dssp             TTCTTCCSBEEEEECTTSCEEEEECCH
T ss_pred             HhHHHhhhheeccccccCCccccCCCc
Confidence            76644321    111234455566553

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=4.1e-11  Score=101.78  Aligned_cols=79  Identities=20%  Similarity=0.309  Sum_probs=65.6

Q ss_pred             CCCCcccc-cCCHHHHHHHhcCCCCCeEEeecCC---CCceEEEEEECCeeEEEEEEEeCCcEEEecCCCCCCCHHHHHH
Q psy8552         416 SGEKTWLV-RMSRAQAEALLSGRPDGTFLIRPST---TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  491 (523)
Q Consensus       416 ~~~~~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~---~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~  491 (523)
                      +....||| .|+|++|+++|+.+++|+||||.|+   .|.|+|+++.++...|++|...+. +.  .....|.||.|+|.
T Consensus         4 lW~~gw~~G~isr~~a~~~L~~~~~GtFLvR~S~~s~~G~~tis~~~~~~~~~~~i~~~~p-~t--~~dl~~~sL~dlI~   80 (141)
T d1bg1a3           4 LWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVEP-YT--KQQLNNMSFAEIIM   80 (141)
T ss_dssp             HHHSSCCCBCCCTTGGGTTTTTSCTTCBCEEECSSCSSCCEEECCCCSSSCSSCCCCCCCC-BC--GGGGTSSCHHHHTT
T ss_pred             eecCCeEEEeCCHHHHHHHhhCCCCCeEEEEecCCccCCCEEEEEEecCcCCceEEeecCC-ee--cCccccCCHHHHHH
Confidence            34568999 9999999999999999999999886   789999999999999998875432 32  23357999999999


Q ss_pred             HHhhCC
Q psy8552         492 HYAANS  497 (523)
Q Consensus       492 ~y~~~~  497 (523)
                      ||+...
T Consensus        81 ~y~~~~   86 (141)
T d1bg1a3          81 GYKIMD   86 (141)
T ss_dssp             SCCCBC
T ss_pred             hhhhhc
Confidence            997654

>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=7.8e-05  Score=61.62  Aligned_cols=73  Identities=25%  Similarity=0.350  Sum_probs=51.3

Q ss_pred             CCccccCCCHHHHHHHhcCCCCceEEEEcCCCC-CCcEEEEEEEC----CeeEEEEEEEeCCeEEeCCCCccCCHHHHHH
Q psy8552         215 AEWYWGDISRDDVNDKLADTADGTFLVRDTSTK-NGEYTLTLRKG----GTNKLIKIFHRNGRYGFSEPFKFTSVVELIN  289 (523)
Q Consensus       215 ~~wyhg~isr~~Ae~lL~~~~~G~FLVR~s~~~-~g~f~LSv~~~----~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV~  289 (523)
                      ..|..|.|+|++|+++|++.+.|+||+|-|++. +|..++++...    ++..++.+.-    |.. ..-.-.||.|.|.
T Consensus         7 dG~I~GFIsK~~a~~~L~~~~~GTFLLRFSdS~~~GgitiawV~~~~~~~~~~v~~lqP----~t~-kdl~~~sLad~Ir   81 (142)
T d1bf5a3           7 DGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEP----YTK-KELSAVTFPDIIR   81 (142)
T ss_dssp             TTCCCCCCCHHHHHHHTTTCCSCCCCEEECSSCSSCCEEEEECCCCSSSSCCCCEECCC----BCH-HHHHSSCHHHHHH
T ss_pred             CCEEEEEecHHHHHHHhhCCCCceEEEEeccCccCCceEEEEEEecCCCCceeEEeeCC----Cch-hhhccCCHHHHHH
Confidence            357789999999999999999999999999986 69899988743    2232332321    100 0011368899888


Q ss_pred             HHh
Q psy8552         290 YYK  292 (523)
Q Consensus       290 ~y~  292 (523)
                      .|+
T Consensus        82 d~~   84 (142)
T d1bf5a3          82 NYK   84 (142)
T ss_dssp             TCC
T ss_pred             HHH
Confidence            765

>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0027  Score=52.10  Aligned_cols=69  Identities=23%  Similarity=0.363  Sum_probs=48.1

Q ss_pred             cccc-cCCHHHHHHHhcCCCCCeEEeecCC---CCceEEEEEEC----CeeEEEEEEEeCCcEEEecCCCCCCCHHHHHH
Q psy8552         420 TWLV-RMSRAQAEALLSGRPDGTFLIRPST---TGQYALSIVCS----GAPKHCLVYETERGFGFAEPFNIYPSLGALVL  491 (523)
Q Consensus       420 ~W~~-~isr~~Ae~~L~~~~~G~FLvR~s~---~~~~~Ls~~~~----~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~  491 (523)
                      -|.. .|+|++|+++|+.++.|+||+|.|+   +|-.+++++..    ++..++.+..-... -+     .=-||.|.|.
T Consensus         8 G~I~GFIsK~~a~~~L~~~~~GTFLLRFSdS~~~GgitiawV~~~~~~~~~~v~~lqP~t~k-dl-----~~~sLad~Ir   81 (142)
T d1bf5a3           8 GCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEPYTKK-EL-----SAVTFPDIIR   81 (142)
T ss_dssp             TCCCCCCCHHHHHHHTTTCCSCCCCEEECSSCSSCCEEEEECCCCSSSSCCCCEECCCBCHH-HH-----HSSCHHHHHH
T ss_pred             CEEEEEecHHHHHHHhhCCCCceEEEEeccCccCCceEEEEEEecCCCCceeEEeeCCCchh-hh-----ccCCHHHHHH
Confidence            4566 8999999999999999999999997   58889988753    23444444421110 00     1238888888


Q ss_pred             HHh
Q psy8552         492 HYA  494 (523)
Q Consensus       492 ~y~  494 (523)
                      .|+
T Consensus        82 d~~   84 (142)
T d1bf5a3          82 NYK   84 (142)
T ss_dssp             TCC
T ss_pred             HHH
Confidence            775

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.14  E-value=0.0046  Score=43.88  Aligned_cols=37  Identities=3%  Similarity=-0.224  Sum_probs=30.5

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVD  413 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~  413 (523)
                      .+++.++...+.+||.++...+++.|++|++++++..
T Consensus        24 Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~   60 (64)
T d1fmka1          24 GERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD   60 (64)
T ss_dssp             TCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             CCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEECc
Confidence            5777777777778999998888899999999976543

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.25  E-value=0.0098  Score=41.16  Aligned_cols=34  Identities=3%  Similarity=-0.335  Sum_probs=29.2

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS  410 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~  410 (523)
                      .+++.+++..+.+||.++...++..|++|+++++
T Consensus        22 Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe   55 (58)
T d1jo8a_          22 NDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS   55 (58)
T ss_dssp             TCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEE
T ss_pred             CCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEE
Confidence            6777777777889999999888999999999864

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.012  Score=41.02  Aligned_cols=34  Identities=6%  Similarity=-0.243  Sum_probs=29.0

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS  410 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~  410 (523)
                      .+++.+++..+.+||.++...++..|++|+++++
T Consensus        25 Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve   58 (60)
T d1arka_          25 GDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE   58 (60)
T ss_dssp             TCEECCSEECSSSEEEEECTTTCCEEEEETTTCE
T ss_pred             CCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEE
Confidence            6777777777789999998888899999999964

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.08  E-value=0.01  Score=42.71  Aligned_cols=35  Identities=3%  Similarity=-0.178  Sum_probs=28.8

Q ss_pred             cccccccc-ccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDA-DIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k-~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .|++.+++ +.+..||.+++..++..|++|++++++
T Consensus        32 GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVeP   67 (69)
T d1gcqc_          32 GDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP   67 (69)
T ss_dssp             TCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEE
T ss_pred             CCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEE
Confidence            67888864 456789999998888999999999754

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.86  E-value=0.011  Score=40.72  Aligned_cols=35  Identities=0%  Similarity=-0.237  Sum_probs=29.2

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.++...+.+||.++...++..|++|++++++
T Consensus        22 Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~p   56 (57)
T d1efna_          22 GEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP   56 (57)
T ss_dssp             TCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEE
T ss_pred             CCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEE
Confidence            67777777777789999988888999999999753

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=90.60  E-value=0.016  Score=39.24  Aligned_cols=32  Identities=0%  Similarity=-0.440  Sum_probs=26.4

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVA  409 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~  409 (523)
                      .+++.+++..+.+||.++. ..+..|++|++|+
T Consensus        20 Gd~~~vl~~~~~~Ww~~~~-~~g~~G~vP~~yv   51 (53)
T d2rn8a1          20 DEEYYLLDSSEIHWWRVQD-KNGHEGYAPSSYL   51 (53)
T ss_dssp             TCEEEECCCSCSSCEEEEC-TTSCEEEECGGGE
T ss_pred             CCEEEEeEEcCCCeEEEEe-CCCCEEEEeHHHE
Confidence            6778888888889999875 4568899999985

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.09  E-value=0.021  Score=39.94  Aligned_cols=35  Identities=6%  Similarity=-0.168  Sum_probs=28.3

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVD  413 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~  413 (523)
                      .+++.+++..+.+||.++.  .+..|++|++++++.+
T Consensus        27 Gd~i~vl~~~~~~Ww~g~~--~g~~G~~P~~yVe~~~   61 (62)
T d1k4us_          27 GDIILVLSKVNEEWLEGES--KGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             SCEEEEEEESSSSCEEEEC--SSCEEEECGGGCCCSC
T ss_pred             CCEEEEeEEcCCCEEEEEE--CCcEEEEchHHeEECC
Confidence            6777787777789999886  4689999999987653

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.45  E-value=0.042  Score=39.01  Aligned_cols=36  Identities=0%  Similarity=-0.307  Sum_probs=28.2

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVD  413 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~  413 (523)
                      .+++.++...+.+||.++. ..+..|++|++++...+
T Consensus        30 Gd~i~v~~~~~~~Ww~~~~-~~g~~G~vP~~yv~~~~   65 (67)
T d1awwa_          30 GDEYFILEESNLPWWRARD-KNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             SCEEECCCCCSSSEECCBC-TTSCBCCEETTTBCCSC
T ss_pred             CCEEEEEEEcCCCeEEEEE-CCCCEEEEcHHHeEECc
Confidence            5777777777789999875 45689999999986543

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.30  E-value=0.025  Score=38.87  Aligned_cols=33  Identities=0%  Similarity=-0.344  Sum_probs=27.0

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS  410 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~  410 (523)
                      .+++.++...+.+||.++... +..|++|+++++
T Consensus        23 Gd~i~v~~~~~~~Ww~~~~~~-g~~G~vP~~yve   55 (57)
T d1ckaa_          23 GDILRIRDKPEEQWWNAEDSE-GKRGMIPVPYVE   55 (57)
T ss_dssp             TCEEEEEECSSSSEEEEECTT-SCEEEEEGGGEE
T ss_pred             CCEEEEEEEcCCCeEEEEECC-CCEEEEcHHHeE
Confidence            678888777788999998654 578999999864

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.80  E-value=0.044  Score=38.88  Aligned_cols=36  Identities=0%  Similarity=-0.361  Sum_probs=27.9

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVD  413 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~  413 (523)
                      .+++.++...+.+||.++. ..+..|++|++++....
T Consensus        24 Gd~i~v~~~~~~~Ww~~~~-~~g~~G~~P~~yV~~~~   59 (67)
T d1gl5a_          24 GQEYIILEKNDLHWWRARD-KYGSEGYIPSNYVTGKK   59 (67)
T ss_dssp             TCEEEEEECSSSSEEEEEC-SSSCEEEEETTSEESST
T ss_pred             CCEEEEEEecCCCcEEEEE-CCCCEEEEEhHHeEEec
Confidence            6788887777788999875 44578999999976543

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.11  E-value=0.074  Score=36.44  Aligned_cols=33  Identities=9%  Similarity=-0.187  Sum_probs=26.9

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.++...+.+||.++.  ++..|++|++++++
T Consensus        24 Gd~i~vl~~~~~~Ww~~~~--~g~~G~~P~~yve~   56 (58)
T d1ng2a1          24 GDVVEVVEKSESGWWFCQM--KAKRGWIPASFLEP   56 (58)
T ss_dssp             TCEEEEEECCTTSCCEEEE--CCCCCCCCGGGCCC
T ss_pred             CCEEEEEEecCCCeEEEEE--CCCCcEEcHhHEEE
Confidence            6788887777889999875  46889999999764

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.90  E-value=0.036  Score=38.00  Aligned_cols=33  Identities=3%  Similarity=-0.135  Sum_probs=26.1

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.++...+.+||.+++  .++.|++|++++++
T Consensus        23 Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yve~   55 (57)
T d1utia_          23 GEVVEVLDSSNPSWWTGRL--HNKLGLFPANYVAP   55 (57)
T ss_dssp             TCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEE
T ss_pred             CCEEEEeEEcCCCEEEEEE--CCcEEEEEHHHEEE
Confidence            5677777777778999986  36899999998754

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.88  E-value=0.04  Score=39.98  Aligned_cols=36  Identities=17%  Similarity=-0.029  Sum_probs=28.2

Q ss_pred             ccccccccccccchhHHHhhhh----hcccccccccCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLK----IAFTNLSGAVASTV  412 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~----~~~g~~p~~~~~~~  412 (523)
                      .+++.+++..+.+||.++...+    +.+|++|++++++.
T Consensus        29 Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~   68 (74)
T d1wfwa_          29 GEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPF   68 (74)
T ss_dssp             TCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBC
T ss_pred             CCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEEC
Confidence            5777787777889999877543    47899999998754

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=85.88  E-value=0.035  Score=42.37  Aligned_cols=32  Identities=6%  Similarity=-0.085  Sum_probs=26.6

Q ss_pred             ccccccccccccchhHHHhhhh-hccccccccc
Q psy8552         377 RFSSDVDADIHSNDVDKYINLK-IAFTNLSGAV  408 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~-~~~g~~p~~~  408 (523)
                      .|++.++...+.+||.+++..+ +..|++|+++
T Consensus        50 GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~   82 (96)
T d1t0ha_          50 KDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   82 (96)
T ss_dssp             TCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             CCEEEEeeeeCCCceEEEEcCCCCCEEEecCcH
Confidence            7888888888889999998654 5779999876

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.65  E-value=0.038  Score=37.73  Aligned_cols=33  Identities=6%  Similarity=-0.235  Sum_probs=26.5

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.++...+.+||.++..  +..|++|++++++
T Consensus        23 Gd~i~v~~~~~~~W~~g~~~--g~~G~~P~~yv~~   55 (56)
T d1gcqa_          23 GDFIHVMDNSDPNWWKGACH--GQTGMFPRNYVTP   55 (56)
T ss_dssp             TCEEEEEECCSSSEEEEEET--TEEEEEEGGGEEE
T ss_pred             CCEEEEEEecCCCEEEEEEC--CeEEEEEHhHEEE
Confidence            67777777777899998874  6899999998753

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=85.64  E-value=0.036  Score=38.15  Aligned_cols=33  Identities=6%  Similarity=-0.193  Sum_probs=26.6

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.++...+.+||.+++.  +..|++|++++++
T Consensus        24 Gd~i~v~~~~~~~W~~g~~~--g~~G~~P~~yvep   56 (58)
T d1sema_          24 GDVITLINKDDPNWWEGQLN--NRRGIFPSNYVCP   56 (58)
T ss_dssp             TCEEEEEECSSSSEEEEEET--TEEEEEEGGGEEE
T ss_pred             CCEEEEeEEcCCCEEEEEEC--CeEEEEEhhhEEE
Confidence            67777777778899999863  5899999999753

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.45  E-value=0.041  Score=37.82  Aligned_cols=32  Identities=9%  Similarity=-0.188  Sum_probs=26.0

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAS  410 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~  410 (523)
                      .+++.+++..+.+||.+++  .+..|++|+++++
T Consensus        24 Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yV~   55 (58)
T d1uj0a_          24 GELITVLDDSDANWWQGEN--HRGTGLFPSNFVT   55 (58)
T ss_dssp             TCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEE
T ss_pred             CCEEEEeEEeCCCEEEEEE--CCeEEEEehHhEe
Confidence            5777777777889999886  3688999999965

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.22  E-value=0.041  Score=42.11  Aligned_cols=34  Identities=3%  Similarity=-0.352  Sum_probs=27.5

Q ss_pred             ccccccccccccchhHHHhh----hhhcccccccccCC
Q psy8552         377 RFSSDVDADIHSNDVDKYIN----LKIAFTNLSGAVAS  410 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~----~~~~~g~~p~~~~~  410 (523)
                      .+++.++...+.+||.+++.    ..+..|++|+|+..
T Consensus        28 Gdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~   65 (96)
T d1kjwa1          28 GDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV   65 (96)
T ss_dssp             TCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHH
T ss_pred             CCEEEEeeeccCceEEEEEccCCCCCCCEeEEecccee
Confidence            68888887788899999874    34578999999853

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.59  E-value=0.059  Score=38.80  Aligned_cols=36  Identities=3%  Similarity=-0.258  Sum_probs=27.2

Q ss_pred             ccccccccc-cccchhHHHhhhhhcccccccccCCCC
Q psy8552         377 RFSSDVDAD-IHSNDVDKYINLKIAFTNLSGAVASTV  412 (523)
Q Consensus       377 ~~~~~l~k~-~~~~w~~~r~~~~~~~g~~p~~~~~~~  412 (523)
                      .+++.++.. ....||.+++..++..|++|++++...
T Consensus        30 Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i   66 (72)
T d1spka_          30 GDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL   66 (72)
T ss_dssp             TCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEEC
T ss_pred             CCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEEC
Confidence            567777544 444688888888889999999997643

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.76  E-value=0.052  Score=38.20  Aligned_cols=36  Identities=8%  Similarity=-0.229  Sum_probs=27.4

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVD  413 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~  413 (523)
                      .+++.+++ .+.+||.++...++..|++|+++++...
T Consensus        26 Gd~i~v~~-~~~~ww~~~~~~~g~~G~vP~~yv~~~~   61 (65)
T d1qcfa1          26 GDQMVVLE-ESGEWWKARSLATRKEGYIPSNYVARVD   61 (65)
T ss_dssp             TCEEEEEE-CCTTEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             CCEEEEEE-ECCCCEEEEEccCCCEEEEchHHeEECc
Confidence            56666654 3457999888888899999999976543

>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Cbl
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.62  E-value=1.4  Score=31.03  Aligned_cols=44  Identities=18%  Similarity=0.386  Sum_probs=37.9

Q ss_pred             CCccccCCCHHHHHHHhcC--CCCceEEEEcCCCCCCcEEEEEEEC
Q psy8552         215 AEWYWGDISRDDVNDKLAD--TADGTFLVRDTSTKNGEYTLTLRKG  258 (523)
Q Consensus       215 ~~wyhg~isr~~Ae~lL~~--~~~G~FLVR~s~~~~g~f~LSv~~~  258 (523)
                      +|=|...|+-+|+.+.|++  ...|+|+.|-|.++.|.+.+-+...
T Consensus         2 HPgY~AFlTYDevk~rL~~~~~kPGSYiFRlSCTrlGQWAIGyvt~   47 (88)
T d3buxb3           2 HPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTA   47 (88)
T ss_dssp             CTTBCTTCCHHHHHHHHGGGTTSTTEEEEEECSSSTTSEEEEEECT
T ss_pred             CCceeEEEeHHHHHHHHHHHhcCCCceEEeeccccccceeeeeecc
Confidence            4667889999999999986  4789999999999999998887753

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.00  E-value=0.068  Score=35.91  Aligned_cols=31  Identities=3%  Similarity=-0.274  Sum_probs=25.2

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVA  409 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~  409 (523)
                      .+++.+++..+.+||.++.  .+..|++|++++
T Consensus        22 Gd~v~vl~~~~~gWw~g~~--~g~~G~~P~~yv   52 (53)
T d1wlpb1          22 GEAVEVIHKLLDGWWVIRK--DDVTGYFPSMYL   52 (53)
T ss_dssp             TCEEEEEECCTTSSEEEES--SSCEEEECSTTE
T ss_pred             CCEEEEEeecCCceEEEEE--CCcEeEecHHhC
Confidence            6778887777889999984  458999999875

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.35  E-value=0.061  Score=37.42  Aligned_cols=34  Identities=0%  Similarity=-0.356  Sum_probs=25.5

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.+++.. .+||.++...++..|++|++|+++
T Consensus        28 Gd~i~v~~~~-~~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1          28 GEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             TCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CCEEEEeEEc-CCCEEEEeccCCeEeEEcHHHEEe
Confidence            5677776544 368887777778999999999753

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.35  E-value=0.18  Score=35.90  Aligned_cols=36  Identities=0%  Similarity=-0.352  Sum_probs=28.0

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVASTVD  413 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~~~  413 (523)
                      .+++.+++..+.+||.+++ ..+..|++|++++....
T Consensus        28 Gd~i~v~~~~~~~Ww~g~~-~~~~~G~fP~~yv~~~~   63 (71)
T d2hspa_          28 SAIIQNVEKQEGGWWRGDY-GGKKQLWFPSNYVEEMV   63 (71)
T ss_dssp             TCEEBSCCCBTTTEECCBC-SSCCSCCEETTTCCSCS
T ss_pred             CCEEEEEEecCCCEEEEEE-CCeEEEEEchHHeEEcC
Confidence            6788887777889999985 44566899999987543

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.59  E-value=0.13  Score=39.22  Aligned_cols=33  Identities=6%  Similarity=-0.210  Sum_probs=26.8

Q ss_pred             ccccccccccccchhHHHhhhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYINLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~~~~~~~g~~p~~~~~~  411 (523)
                      .+++.+++..+.+||.+++  .+..|++|++|++.
T Consensus        56 Gd~i~Vl~~~~~gWw~g~~--~g~~G~~P~nyVe~   88 (98)
T d1udla_          56 GQLINVMNKDDPDWWQGEI--NGVTGLFPSNYVKM   88 (98)
T ss_dssp             TCEEEECBCCSSSEEBCBS--SSCBCCEETTSEEE
T ss_pred             CCEEEEeEecCCCeEEEEE--CCeEEEEchHHEEE
Confidence            6788887777789999985  46899999999653

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.15  E-value=0.079  Score=38.86  Aligned_cols=35  Identities=6%  Similarity=-0.272  Sum_probs=27.4

Q ss_pred             ccccccccccccchhHHHh---hhhhcccccccccCCC
Q psy8552         377 RFSSDVDADIHSNDVDKYI---NLKIAFTNLSGAVAST  411 (523)
Q Consensus       377 ~~~~~l~k~~~~~w~~~r~---~~~~~~g~~p~~~~~~  411 (523)
                      .+++.+++..+.+||.+++   ..+++.|++|++|+..
T Consensus        29 Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~   66 (80)
T d1ue9a_          29 GQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL   66 (80)
T ss_dssp             TCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEE
T ss_pred             CCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEE
Confidence            6788887777789999876   3456789999999653