Psyllid ID: psy8554

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MLQINKVIFYSASTSGGPDTSCPPMPSLSALNRTERDLPHHDEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMTVV
Secondary Structure (PSIPRED)
ccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccEEEEEEcccccEEEEEEEccEEEEEEEEEcccEEEEcccccccccHHHHHHHHHHccccccccccEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEcccccccccccccccccccHccccccccccccccEEEccccHHHHHHHHccccccEEEEEEcccccEEEEEEEccEEEEEEEEEEccEEEcccccccEccHHHHHHHHHHccHHHccccccccccEEccccccccEEc
Coil and Loop (DISEMBL)
MLQINKVIFYSastsggpdtscppmpslsalnrterdlphhdekTWLVRMSRAQAEALlsgrpdgtflirpsttgqyALSIvcsgapkhclvyetergfgfaepfniypSLGALVLHYAANSLEehnddlkttlaypvfapasgmtvv
Flexible Loop (DISEMBL)
MLQINKVIFYsastsggpdtscPPMPSLSALNRTERDLPHHDEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAypvfapasgmtvv
Low Complexity Region (SEG)
MLQINKVIFYSASTSGGPDTSCPPMPSLSALNRTERDLPHHDEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMTVV
Disordered region (IsUnstruct)
******VIFY***********************************WLVRM******ALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA********
Disordered Region (DISOPRED)
*LQINKV*********************************HDEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP*******
Disordered Region (DISEMBL)
MLQINKVIFYSAS*********PPMPSLSALNRTERDLPHHDEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMTVV
Disordered Region (DISPRO)
MLQINKVIFYSAS***************************HDEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMTV*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQINKVIFYSASTSGGPDTSCPPMPSLSALNRTERDLPHHDEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMTVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
Q64143	461	Phosphatidylinositol 3-ki	yes	N/A	0.743	0.238	0.571	2e-32
Q92569	461	Phosphatidylinositol 3-ki	yes	N/A	0.743	0.238	0.571	2e-32
O46404	461	Phosphatidylinositol 3-ki	yes	N/A	0.743	0.238	0.571	3e-32
Q63789	461	Phosphatidylinositol 3-ki	yes	N/A	0.743	0.238	0.562	7e-31
O08908	722	Phosphatidylinositol 3-ki	no	N/A	0.777	0.159	0.564	1e-30
O00459	728	Phosphatidylinositol 3-ki	no	N/A	0.736	0.149	0.585	2e-30
Q5R685	724	Phosphatidylinositol 3-ki	no	N/A	0.75	0.153	0.566	2e-30
P26450	724	Phosphatidylinositol 3-ki	no	N/A	0.75	0.153	0.566	2e-30
P27986	724	Phosphatidylinositol 3-ki	no	N/A	0.75	0.153	0.566	2e-30
P23727	724	Phosphatidylinositol 3-ki	no	N/A	0.75	0.153	0.566	2e-30

>sp|Q64143|P55G_MOUSE Phosphatidylinositol 3-kinase regulatory subunit gamma OS=Mus musculus GN=Pik3r3 PE=1 SV=1

 Score =  137 bits (346), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/112 (57%), Positives = 79/112 (70%), Gaps = 2/112 (1%)

Query: 31  LNRTERDLPHHDEKTWLVR-MSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
           +N  + +LPH+DEKTW V  ++R QAE LL G+PDG FLIR S+  G YA S+V  G  K
Sbjct: 343 INEEDENLPHYDEKTWFVEDINRVQAEDLLYGKPDGAFLIRESSKKGCYACSVVADGEVK 402

Query: 89  HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
           HC++Y T RG+GFAEP+N+Y SL  LVLHY   SL +HND L   LAYPV A
Sbjct: 403 HCVIYSTARGYGFAEPYNLYSSLKELVLHYQQTSLVQHNDSLNVRLAYPVHA 454

Binds to activated (phosphorylated) protein-tyrosine kinases through its SH2 domain and regulates their kinase activity. During insulin stimulation, it also binds to IRS-1.
Mus musculus (taxid: 10090)

>sp|Q92569|P55G_HUMAN Phosphatidylinositol 3-kinase regulatory subunit gamma OS=Homo sapiens GN=PIK3R3 PE=1 SV=2

 Score =  137 bits (346), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/112 (57%), Positives = 79/112 (70%), Gaps = 2/112 (1%)

Query: 31  LNRTERDLPHHDEKTWLVR-MSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
           +N  + +LPH+DEKTW V  ++R QAE LL G+PDG FLIR S+  G YA S+V  G  K
Sbjct: 343 INEEDENLPHYDEKTWFVEDINRVQAEDLLYGKPDGAFLIRESSKKGCYACSVVADGEVK 402

Query: 89  HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
           HC++Y T RG+GFAEP+N+Y SL  LVLHY   SL +HND L   LAYPV A
Sbjct: 403 HCVIYSTARGYGFAEPYNLYSSLKELVLHYQQTSLVQHNDSLNVRLAYPVHA 454

Binds to activated (phosphorylated) protein-tyrosine kinases through its SH2 domain and regulates their kinase activity. During insulin stimulation, it also binds to IRS-1.

Homo sapiens (taxid: 9606)

>sp|O46404|P55G_BOVIN Phosphatidylinositol 3-kinase regulatory subunit gamma OS=Bos taurus GN=PIK3R3 PE=2 SV=1

 Score =  137 bits (344), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/112 (57%), Positives = 79/112 (70%), Gaps = 2/112 (1%)

Query: 31  LNRTERDLPHHDEKTWLVR-MSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
           +N  + +LPH+DEKTW V  ++R QAE LL G+PDG FLIR S+  G YA S+V  G  K
Sbjct: 343 INEEDENLPHYDEKTWFVEDINRVQAEDLLYGKPDGAFLIRESSKKGCYACSVVADGEVK 402

Query: 89  HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
           HC++Y T RG+GFAEP+N+Y SL  LVLHY   SL +HND L   LAYPV A
Sbjct: 403 HCVIYSTARGYGFAEPYNLYGSLKELVLHYQRTSLVQHNDSLNVRLAYPVHA 454

Binds to activated (phosphorylated) protein-tyrosine kinases through its SH2 domain and regulates their kinase activity. During insulin stimulation, it also binds to IRS-1.

Bos taurus (taxid: 9913)

>sp|Q63789|P55G_RAT Phosphatidylinositol 3-kinase regulatory subunit gamma OS=Rattus norvegicus GN=Pik3r3 PE=2 SV=1

 Score =  132 bits (332), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 63/112 (56%), Positives = 77/112 (68%), Gaps = 2/112 (1%)

Query: 31  LNRTERDLPHHDEKTWLVR-MSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
           +N  +  LPH+DEKTW V  ++R QAE LL G+PDG FLIR S+  G YA S+V  G  K
Sbjct: 343 INEDDESLPHYDEKTWFVEDVNRVQAEDLLYGKPDGAFLIRESSKKGCYACSVVADGEVK 402

Query: 89  HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
            C++Y   RG+GFAEP+N+Y SL  LVLHY   SL +HND L  TLAYPV A
Sbjct: 403 PCVIYSPARGYGFAEPYNLYGSLKELVLHYQQTSLVQHNDSLNVTLAYPVHA 454

Binds to activated (phosphorylated) protein-tyrosine kinases through its SH2 domain and regulates their kinase activity. During insulin stimulation, it also binds to IRS-1.

Rattus norvegicus (taxid: 10116)

>sp|O08908|P85B_MOUSE Phosphatidylinositol 3-kinase regulatory subunit beta OS=Mus musculus GN=Pik3r2 PE=1 SV=2

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 82/117 (70%), Gaps = 2/117 (1%)

Query: 30  ALNRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAP 87
           +L   E  LPHH+E+TW V +++R QAE +LSG+ DGTFLIR S+  G YA S+V  G  
Sbjct: 600 SLMEDEDALPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRESSQRGCYACSVVVDGDT 659

Query: 88  KHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG 144
           KHC++Y T  GFGFAEP+N+Y SL  LVLHY   SL +HND L  TLA+PV AP  G
Sbjct: 660 KHCVIYRTATGFGFAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRAPGPG 716

Binds to activated (phosphorylated) protein-tyrosine kinases, through its SH2 domain, and acts as an adapter, mediating the association of the p110 catalytic unit to the plasma membrane.

Mus musculus (taxid: 10090)

>sp|O00459|P85B_HUMAN Phosphatidylinositol 3-kinase regulatory subunit beta OS=Homo sapiens GN=PIK3R2 PE=1 SV=2

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 80/111 (72%), Gaps = 2/111 (1%)

Query: 30  ALNRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAP 87
           AL   E DLPHH+E+TW V +++R QAE +LSG+ DGTFLIR S+  G YA S+V  G  
Sbjct: 606 ALMEDEDDLPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRESSQRGCYACSVVVDGDT 665

Query: 88  KHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
           KHC++Y T  GFGFAEP+N+Y SL  LVLHY   SL +HND L  TLA+PV
Sbjct: 666 KHCVIYRTATGFGFAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPV 716

Binds to activated (phosphorylated) protein-tyrosine kinases, through its SH2 domain, and acts as an adapter, mediating the association of the p110 catalytic unit to the plasma membrane.

Homo sapiens (taxid: 9606)

>sp|Q5R685|P85A_PONAB Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Pongo abelii GN=PIK3R1 PE=2 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/113 (56%), Positives = 79/113 (69%), Gaps = 2/113 (1%)

Query: 30  ALNRTERDLPHHDEKTWLVRMS-RAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAP 87
           +L   + DLPHHDEKTW V  S R +AE LL G+ DGTFL+R S+  G YA S+V  G  
Sbjct: 608 SLVEDDEDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEV 667

Query: 88  KHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
           KHC++ +T  G+GFAEP+N+Y SL  LVLHY   SL +HND L  TLAYPV+A
Sbjct: 668 KHCVINKTATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 720

Binds to activated (phosphorylated) protein-Tyr kinases, through its SH2 domain, and acts as an adapter, mediating the association of the p110 catalytic unit to the plasma membrane. Necessary for the insulin-stimulated increase in glucose uptake and glycogen synthesis in insulin-sensitive tissues. Plays an important role in signaling in response to FGFR1, FGFR2, FGFR3, FGFR4, KITLG/SCF, KIT, PDGFRA and PDGFRB. Likewise, plays a role in ITGB2 signaling.

Pongo abelii (taxid: 9601)

>sp|P26450|P85A_MOUSE Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Mus musculus GN=Pik3r1 PE=1 SV=2

 Score =  130 bits (328), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/113 (56%), Positives = 79/113 (69%), Gaps = 2/113 (1%)

Query: 30  ALNRTERDLPHHDEKTWLVRMS-RAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAP 87
           +L   + DLPHHDEKTW V  S R +AE LL G+ DGTFL+R S+  G YA S+V  G  
Sbjct: 608 SLVEDDEDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEV 667

Query: 88  KHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
           KHC++ +T  G+GFAEP+N+Y SL  LVLHY   SL +HND L  TLAYPV+A
Sbjct: 668 KHCVINKTATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 720

Binds to activated (phosphorylated) protein-Tyr kinases, through its SH2 domain, and acts as an adapter, mediating the association of the p110 catalytic unit to the plasma membrane. Necessary for the insulin-stimulated increase in glucose uptake and glycogen synthesis in insulin-sensitive tissues. Plays an important role in signaling in response to FGFR1, FGFR2, FGFR3, FGFR4, KITLG/SCF, KIT, PDGFRA and PDGFRB. Likewise, plays a role in ITGB2 signaling.

Mus musculus (taxid: 10090)

>sp|P27986|P85A_HUMAN Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Homo sapiens GN=PIK3R1 PE=1 SV=2

 Score =  130 bits (328), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/113 (56%), Positives = 79/113 (69%), Gaps = 2/113 (1%)

Query: 30  ALNRTERDLPHHDEKTWLVRMS-RAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAP 87
           +L   + DLPHHDEKTW V  S R +AE LL G+ DGTFL+R S+  G YA S+V  G  
Sbjct: 608 SLVEDDEDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEV 667

Query: 88  KHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
           KHC++ +T  G+GFAEP+N+Y SL  LVLHY   SL +HND L  TLAYPV+A
Sbjct: 668 KHCVINKTATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 720

Binds to activated (phosphorylated) protein-Tyr kinases, through its SH2 domain, and acts as an adapter, mediating the association of the p110 catalytic unit to the plasma membrane. Necessary for the insulin-stimulated increase in glucose uptake and glycogen synthesis in insulin-sensitive tissues. Plays an important role in signaling in response to FGFR1, FGFR2, FGFR3, FGFR4, KITLG/SCF, KIT, PDGFRA and PDGFRB. Likewise, plays a role in ITGB2 signaling.

Homo sapiens (taxid: 9606)

>sp|P23727|P85A_BOVIN Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Bos taurus GN=PIK3R1 PE=1 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/113 (56%), Positives = 79/113 (69%), Gaps = 2/113 (1%)

Query: 30  ALNRTERDLPHHDEKTWLVRMS-RAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAP 87
           +L   + DLPHHDEKTW V  S R +AE LL G+ DGTFL+R S+  G YA S+V  G  
Sbjct: 608 SLVEDDEDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEV 667

Query: 88  KHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
           KHC++ +T  G+GFAEP+N+Y SL  LVLHY   SL +HND L  TLAYPV+A
Sbjct: 668 KHCVINKTATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 720

Binds to activated (phosphorylated) protein-Tyr kinases, through its SH2 domain, and acts as an adapter, mediating the association of the p110 catalytic unit to the plasma membrane. Necessary for the insulin-stimulated increase in glucose uptake and glycogen synthesis in insulin-sensitive tissues. Plays an important role in signaling in response to FGFR1, FGFR2, FGFR3, FGFR4, KITLG/SCF, KIT, PDGFRA and PDGFRB. Likewise, plays a role in ITGB2 signaling.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
242021327	726	Phosphatidylinositol 3-kinase regulatory	0.709	0.144	0.669	5e-38
312377934	1156	hypothetical protein AND_10630 [Anophele	0.743	0.095	0.621	5e-36
66500538	1256	PREDICTED: hypothetical protein LOC40857	0.722	0.085	0.648	5e-35
340709184	1263	PREDICTED: hypothetical protein LOC10064	0.810	0.095	0.614	4e-34
307211841	723	Phosphatidylinositol 3-kinase regulatory	0.722	0.147	0.629	4e-34
350425237	1255	PREDICTED: hypothetical protein LOC10074	0.682	0.080	0.676	6e-34
328699600	394	PREDICTED: phosphatidylinositol 3-kinase	0.709	0.266	0.660	1e-33
328710005	441	PREDICTED: phosphatidylinositol 3-kinase	0.817	0.274	0.574	4e-33
345486690	969	PREDICTED: phosphatidylinositol 3-kinase	0.716	0.109	0.635	5e-33
157136595	568	phosphatidylinositol 3-kinase regulatory	0.716	0.186	0.588	9e-33

>gi|242021327|ref|XP_002431096.1| Phosphatidylinositol 3-kinase regulatory subunit alpha, putative [Pediculus humanus corporis] gi|212516345|gb|EEB18358.1| Phosphatidylinositol 3-kinase regulatory subunit alpha, putative [Pediculus humanus corporis]

 Score =  162 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 71/106 (66%), Positives = 87/106 (82%), Gaps = 1/106 (0%)

Query: 36  RDLPHHDEKTW-LVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYE 94
           + +PH +E  W L   SRAQA  LL  +P+GTFL+RPS++GQYALSIVC+G   HC++Y+
Sbjct: 601 KSMPHQNEYLWNLPECSRAQAATLLESKPEGTFLVRPSSSGQYALSIVCNGVINHCIIYQ 660

Query: 95  TERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
           T+RGFGFAEP+NIYPSL  LVLHYA NSLEEHN++LKTTL YPVFA
Sbjct: 661 TDRGFGFAEPYNIYPSLKQLVLHYANNSLEEHNEELKTTLMYPVFA 706

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377934|gb|EFR24642.1| hypothetical protein AND_10630 [Anopheles darlingi]

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 88/111 (79%), Gaps = 1/111 (0%)

Query: 32   NRTERDLPHHDEKTWLVR-MSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHC 90
            N++  ++PH DE TWL+   SR +AE  L+ +P GTFLIRP + G YALSI C+GA  HC
Sbjct: 996  NQSGEEMPHLDETTWLLEGCSRQEAEEKLAKKPTGTFLIRPRSAGHYALSIACNGATNHC 1055

Query: 91   LVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
            ++YET+RG+GFAEP+ IY SL ALV+HYA+NSLEEHND+L+ TL YPVFAP
Sbjct: 1056 IIYETDRGYGFAEPYFIYESLKALVVHYASNSLEEHNDNLQATLKYPVFAP 1106

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66500538|ref|XP_392119.2| PREDICTED: hypothetical protein LOC408577 [Apis mellifera]

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 70/108 (64%), Positives = 85/108 (78%), Gaps = 1/108 (0%)

Query: 40   HHDEKTWL-VRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERG 98
            H DEKTWL +  SR+ A+ +L+ RPDGTFLIR S TGQYALSI+C+G   HC++Y TERG
Sbjct: 1122 HSDEKTWLYLECSRSDADRILADRPDGTFLIRTSRTGQYALSIMCNGTVNHCIIYGTERG 1181

Query: 99   FGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMT 146
            FGFAEP+NI+ SL  LVLHYA NSLEEHN+ L TTLAYP FA  + ++
Sbjct: 1182 FGFAEPYNIHKSLKHLVLHYAQNSLEEHNESLNTTLAYPAFASPAALS 1229

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709184|ref|XP_003393192.1| PREDICTED: hypothetical protein LOC100643962 [Bombus terrestris]

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 90/122 (73%), Gaps = 2/122 (1%)

Query: 21   SCPPMPSLSALNRTERDLP-HHDEKTWL-VRMSRAQAEALLSGRPDGTFLIRPSTTGQYA 78
            S P +  L+  +  E DL  H DE TWL +  SR+ A+ +L+ RPDGTFLIR S TGQYA
Sbjct: 1102 SNPLLGDLAYGDLQEVDLEVHSDETTWLYLECSRSDADRILAERPDGTFLIRTSRTGQYA 1161

Query: 79   LSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            LSI+C+G   HC++Y TERGFGFAEP+NI+ SL  LVLHYA NSLEEHN+ L TTLAYP 
Sbjct: 1162 LSIMCNGTVNHCIIYGTERGFGFAEPYNIHKSLKHLVLHYAQNSLEEHNESLNTTLAYPA 1221

Query: 139  FA 140
            FA
Sbjct: 1222 FA 1223

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211841|gb|EFN87788.1| Phosphatidylinositol 3-kinase regulatory subunit alpha [Harpegnathos saltator]

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/108 (62%), Positives = 86/108 (79%), Gaps = 1/108 (0%)

Query: 40  HHDEKTWL-VRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERG 98
           H D+K+WL ++ SR+ A+  L GRPDGTFL+R S TGQYALSIVC+G  +HC++Y TERG
Sbjct: 581 HSDDKSWLFLKGSRSDADRFLMGRPDGTFLVRRSRTGQYALSIVCNGTVQHCIIYATERG 640

Query: 99  FGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMT 146
           +GFAEP+NI+ SL  LVLHYA NSLEEHN+ L TTLAYP FA  + ++
Sbjct: 641 YGFAEPYNIHESLKHLVLHYAQNSLEEHNECLTTTLAYPAFASPAALS 688

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425237|ref|XP_003494056.1| PREDICTED: hypothetical protein LOC100743083 [Bombus impatiens]

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 81/102 (79%), Gaps = 1/102 (0%)

Query: 40   HHDEKTWL-VRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERG 98
            H DE TWL +  SR+ A+ +L+ RPDGTFLIR S TGQYALSI+C+G   HC++Y TERG
Sbjct: 1114 HSDETTWLYLECSRSDADRILAERPDGTFLIRTSRTGQYALSIMCNGTVNHCIIYGTERG 1173

Query: 99   FGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
            FGFAEP+NI+ SL  LVLHYA NSLEEHN+ L TTLAYP FA
Sbjct: 1174 FGFAEPYNIHKSLKHLVLHYAQNSLEEHNESLNTTLAYPAFA 1215

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328699600|ref|XP_001952098.2| PREDICTED: phosphatidylinositol 3-kinase regulatory subunit gamma-like [Acyrthosiphon pisum]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/106 (66%), Positives = 82/106 (77%), Gaps = 1/106 (0%)

Query: 36  RDLPHHDEKTWLVR-MSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYE 94
           ++L H DE TWL++  SR  AE LL+GR +GTFLIRPS TGQ ALSIVC+G   HC+VY 
Sbjct: 281 QNLSHLDEGTWLLQPCSRVDAERLLNGRRNGTFLIRPSRTGQSALSIVCNGVVNHCIVYS 340

Query: 95  TERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
           T +GFGFAEP+NIY SL  LV+HY+  SLEEHND L TTLAYPV A
Sbjct: 341 TPKGFGFAEPYNIYSSLKDLVMHYSQTSLEEHNDSLTTTLAYPVIA 386

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328710005|ref|XP_001949153.2| PREDICTED: phosphatidylinositol 3-kinase regulatory subunit beta-like [Acyrthosiphon pisum]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/127 (57%), Positives = 87/127 (68%), Gaps = 6/127 (4%)

Query: 15  SGGPDTSCPPMPSLSALNRTERDLPHHDEKTWLVR-MSRAQAEALLSGRPDGTFLIRPST 73
           +G    +C P     A N     L H DE TWL++  SRA AE +L+G+ +GTFLIRPS 
Sbjct: 315 NGTDWNTCKPEDIQLAQN-----LSHLDESTWLLQSCSRADAERMLNGKRNGTFLIRPSR 369

Query: 74  TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTT 133
           TGQ ALSIVC+G   HC+VY T +GFGFAEP+NIY SL  LV+HY+  SLEEHND L  T
Sbjct: 370 TGQSALSIVCNGVVNHCIVYRTPKGFGFAEPYNIYSSLKDLVMHYSQTSLEEHNDSLTIT 429

Query: 134 LAYPVFA 140
           LAYPV A
Sbjct: 430 LAYPVLA 436

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486690|ref|XP_001606345.2| PREDICTED: phosphatidylinositol 3-kinase regulatory subunit alpha-like [Nasonia vitripennis]

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 68/107 (63%), Positives = 82/107 (76%), Gaps = 1/107 (0%)

Query: 40  HHDEKTWL-VRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYETERG 98
           H DEKTWL +  SR+ A+ +L  RP+GTFL+R ST GQYALSI+C G   HC++Y TERG
Sbjct: 819 HSDEKTWLYLDGSRSDADRILKDRPEGTFLVRRSTIGQYALSIMCQGTVNHCIIYATERG 878

Query: 99  FGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGM 145
           FGFAEP+NI+ SL  LVLHYA NSLEEHN+ L TTLAYP FA  + +
Sbjct: 879 FGFAEPYNIHESLRHLVLHYAQNSLEEHNECLTTTLAYPCFASPAAL 925

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157136595|ref|XP_001663781.1| phosphatidylinositol 3-kinase regulatory subunit [Aedes aegypti] gi|108869909|gb|EAT34134.1| AAEL013596-PA [Aedes aegypti]

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 63/107 (58%), Positives = 83/107 (77%), Gaps = 1/107 (0%)

Query: 36  RDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCSGAPKHCLVYE 94
           +++PH+DE TWLV   +R  AE  L+ +P+GTF+IRP + G YALSI C+    HC++ +
Sbjct: 456 QEMPHNDESTWLVPTFNRTDAEKELASKPNGTFVIRPGSGGPYALSIKCNDTVNHCIIQQ 515

Query: 95  TERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
           T+RG+GFAEP+NIY SL +LVLHYA NSLEEHND L+TTL YP+ AP
Sbjct: 516 TDRGYGFAEPYNIYDSLKSLVLHYATNSLEEHNDTLQTTLKYPLLAP 562

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
UNIPROTKB|D4A6X0	402	Pik3r3 "Phosphatidylinositol 3	0.743	0.273	0.580	6.9e-31
UNIPROTKB|E2RPB0	461	PIK3R3 "Uncharacterized protei	0.743	0.238	0.571	1.8e-30
UNIPROTKB|Q92569	461	PIK3R3 "Phosphatidylinositol 3	0.743	0.238	0.571	1.8e-30
UNIPROTKB|E7EMU8	366	PIK3R3 "Phosphatidylinositol 3	0.743	0.300	0.571	1.8e-30
UNIPROTKB|F1MDQ5	461	PIK3R3 "Phosphatidylinositol 3	0.743	0.238	0.571	2.3e-30
UNIPROTKB|O46404	461	PIK3R3 "Phosphatidylinositol 3	0.743	0.238	0.571	2.3e-30
UNIPROTKB|F1S3V4	430	PIK3R3 "Uncharacterized protei	0.743	0.255	0.571	2.3e-30
UNIPROTKB|E1C5L1	728	PIK3R3 "Uncharacterized protei	0.743	0.151	0.580	2.6e-30
UNIPROTKB|E1C8M6	730	PIK3R3 "Uncharacterized protei	0.743	0.150	0.580	2.6e-30
UNIPROTKB|E1BQ48	738	PIK3R3 "Uncharacterized protei	0.743	0.149	0.580	2.7e-30

UNIPROTKB|D4A6X0 Pik3r3 "Phosphatidylinositol 3-kinase regulatory subunit gamma" [Rattus norvegicus (taxid:10116)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 65/112 (58%), Positives = 79/112 (70%)

Query:    31 LNRTERDLPHHDEKTWLVR-MSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
             +N  +  LPH+DEKTW V  ++R QAE LL G+PDG FLIR S+  G YA S+V  G  K
Sbjct:   284 INEDDESLPHYDEKTWFVEDVNRVQAEDLLYGKPDGAFLIRESSKKGCYACSVVADGEVK 343

Query:    89 HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
             HC++Y T RG+GFAEP+N+Y SL  LVLHY   SL +HND L  TLAYPV A
Sbjct:   344 HCVIYSTARGYGFAEPYNLYGSLKELVLHYQQTSLVQHNDSLNVTLAYPVHA 395

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

GO:0035014 "phosphatidylinositol 3-kinase regulator activity" evidence=IEA

UNIPROTKB|E2RPB0 PIK3R3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 64/112 (57%), Positives = 79/112 (70%)

Query:    31 LNRTERDLPHHDEKTWLVR-MSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
             +N  + +LPH+DEKTW V  ++R QAE LL G+PDG FLIR S+  G YA S+V  G  K
Sbjct:   343 INEEDENLPHYDEKTWFVEDINRVQAEDLLYGKPDGAFLIRESSKKGCYACSVVADGEVK 402

Query:    89 HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
             HC++Y T RG+GFAEP+N+Y SL  LVLHY   SL +HND L   LAYPV A
Sbjct:   403 HCVIYSTARGYGFAEPYNLYSSLKELVLHYQQTSLVQHNDSLNVRLAYPVHA 454

GO:0046935 "1-phosphatidylinositol-3-kinase regulator activity" evidence=IEA

GO:0008286 "insulin receptor signaling pathway" evidence=IEA

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

UNIPROTKB|Q92569 PIK3R3 "Phosphatidylinositol 3-kinase regulatory subunit gamma" [Homo sapiens (taxid:9606)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 64/112 (57%), Positives = 79/112 (70%)

Query:    31 LNRTERDLPHHDEKTWLVR-MSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
             +N  + +LPH+DEKTW V  ++R QAE LL G+PDG FLIR S+  G YA S+V  G  K
Sbjct:   343 INEEDENLPHYDEKTWFVEDINRVQAEDLLYGKPDGAFLIRESSKKGCYACSVVADGEVK 402

Query:    89 HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
             HC++Y T RG+GFAEP+N+Y SL  LVLHY   SL +HND L   LAYPV A
Sbjct:   403 HCVIYSTARGYGFAEPYNLYSSLKELVLHYQQTSLVQHNDSLNVRLAYPVHA 454

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

GO:0008286 "insulin receptor signaling pathway" evidence=IEA

GO:0046935 "1-phosphatidylinositol-3-kinase regulator activity" evidence=IEA

GO:0016303 "1-phosphatidylinositol-3-kinase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0031295 "T cell costimulation" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0036092 "phosphatidylinositol-3-phosphate biosynthetic process" evidence=TAS

UNIPROTKB|E7EMU8 PIK3R3 "Phosphatidylinositol 3-kinase regulatory subunit gamma" [Homo sapiens (taxid:9606)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 64/112 (57%), Positives = 79/112 (70%)

Query:    31 LNRTERDLPHHDEKTWLVR-MSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
             +N  + +LPH+DEKTW V  ++R QAE LL G+PDG FLIR S+  G YA S+V  G  K
Sbjct:   248 INEEDENLPHYDEKTWFVEDINRVQAEDLLYGKPDGAFLIRESSKKGCYACSVVADGEVK 307

Query:    89 HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
             HC++Y T RG+GFAEP+N+Y SL  LVLHY   SL +HND L   LAYPV A
Sbjct:   308 HCVIYSTARGYGFAEPYNLYSSLKELVLHYQQTSLVQHNDSLNVRLAYPVHA 359

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

GO:0035014 "phosphatidylinositol 3-kinase regulator activity" evidence=IEA

UNIPROTKB|F1MDQ5 PIK3R3 "Phosphatidylinositol 3-kinase regulatory subunit gamma" [Bos taurus (taxid:9913)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 64/112 (57%), Positives = 79/112 (70%)

Query:    31 LNRTERDLPHHDEKTWLVR-MSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
             +N  + +LPH+DEKTW V  ++R QAE LL G+PDG FLIR S+  G YA S+V  G  K
Sbjct:   343 INEEDENLPHYDEKTWFVEDINRVQAEDLLYGKPDGAFLIRESSKKGCYACSVVADGEVK 402

Query:    89 HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
             HC++Y T RG+GFAEP+N+Y SL  LVLHY   SL +HND L   LAYPV A
Sbjct:   403 HCVIYSTARGYGFAEPYNLYGSLKELVLHYQRTSLVQHNDSLNVRLAYPVHA 454

GO:0046935 "1-phosphatidylinositol-3-kinase regulator activity" evidence=IEA

GO:0008286 "insulin receptor signaling pathway" evidence=IEA

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

UNIPROTKB|O46404 PIK3R3 "Phosphatidylinositol 3-kinase regulatory subunit gamma" [Bos taurus (taxid:9913)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 64/112 (57%), Positives = 79/112 (70%)

Query:    31 LNRTERDLPHHDEKTWLVR-MSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
             +N  + +LPH+DEKTW V  ++R QAE LL G+PDG FLIR S+  G YA S+V  G  K
Sbjct:   343 INEEDENLPHYDEKTWFVEDINRVQAEDLLYGKPDGAFLIRESSKKGCYACSVVADGEVK 402

Query:    89 HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
             HC++Y T RG+GFAEP+N+Y SL  LVLHY   SL +HND L   LAYPV A
Sbjct:   403 HCVIYSTARGYGFAEPYNLYGSLKELVLHYQRTSLVQHNDSLNVRLAYPVHA 454

GO:0035014 "phosphatidylinositol 3-kinase regulator activity" evidence=IEA

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

UNIPROTKB|F1S3V4 PIK3R3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 64/112 (57%), Positives = 79/112 (70%)

Query:    31 LNRTERDLPHHDEKTWLVR-MSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
             +N  + +LPH+DEKTW V  ++R QAE LL G+PDG FLIR S+  G YA S+V  G  K
Sbjct:   312 VNEEDENLPHYDEKTWFVEDVNRVQAEDLLYGKPDGAFLIRESSKKGCYACSVVADGEVK 371

Query:    89 HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
             HC++Y T RG+GFAEP+N+Y SL  LVLHY   SL +HND L   LAYPV A
Sbjct:   372 HCVIYSTARGYGFAEPYNLYSSLKELVLHYQQTSLVQHNDSLNVRLAYPVHA 423

GO:0046935 "1-phosphatidylinositol-3-kinase regulator activity" evidence=IEA

GO:0008286 "insulin receptor signaling pathway" evidence=IEA

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

UNIPROTKB|E1C5L1 PIK3R3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 343 (125.8 bits), Expect = 2.6e-30, P = 2.6e-30
 Identities = 65/112 (58%), Positives = 80/112 (71%)

Query:    31 LNRTERDLPHHDEKTWLVR-MSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
             +N  E +LPHHDEKTW V  ++R QAE LL G+PDG FLIR S+  G YA S+V  G  K
Sbjct:   609 VNEEEENLPHHDEKTWFVGDLNRIQAEDLLCGKPDGAFLIRESSKKGCYACSVVADGEVK 668

Query:    89 HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
             HC++Y T RG+GFAEP+N+Y +L  LVLHY   SL +HND L   LAYPV+A
Sbjct:   669 HCVIYSTPRGYGFAEPYNLYSTLKDLVLHYQQTSLVQHNDSLNVRLAYPVYA 720

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0035014 "phosphatidylinositol 3-kinase regulator activity" evidence=IEA

UNIPROTKB|E1C8M6 PIK3R3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 343 (125.8 bits), Expect = 2.6e-30, P = 2.6e-30
 Identities = 65/112 (58%), Positives = 80/112 (71%)

Query:    31 LNRTERDLPHHDEKTWLVR-MSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
             +N  E +LPHHDEKTW V  ++R QAE LL G+PDG FLIR S+  G YA S+V  G  K
Sbjct:   615 VNEEEENLPHHDEKTWFVGDLNRIQAEDLLCGKPDGAFLIRESSKKGCYACSVVADGEVK 674

Query:    89 HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
             HC++Y T RG+GFAEP+N+Y +L  LVLHY   SL +HND L   LAYPV+A
Sbjct:   675 HCVIYSTPRGYGFAEPYNLYSTLKDLVLHYQQTSLVQHNDSLNVRLAYPVYA 726

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0035014 "phosphatidylinositol 3-kinase regulator activity" evidence=IEA

UNIPROTKB|E1BQ48 PIK3R3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 343 (125.8 bits), Expect = 2.7e-30, P = 2.7e-30
 Identities = 65/112 (58%), Positives = 80/112 (71%)

Query:    31 LNRTERDLPHHDEKTWLVR-MSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
             +N  E +LPHHDEKTW V  ++R QAE LL G+PDG FLIR S+  G YA S+V  G  K
Sbjct:   623 VNEEEENLPHHDEKTWFVGDLNRIQAEDLLCGKPDGAFLIRESSKKGCYACSVVADGEVK 682

Query:    89 HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
             HC++Y T RG+GFAEP+N+Y +L  LVLHY   SL +HND L   LAYPV+A
Sbjct:   683 HCVIYSTPRGYGFAEPYNLYSTLKDLVLHYQQTSLVQHNDSLNVRLAYPVYA 734

GO:0005942 "phosphatidylinositol 3-kinase complex" evidence=IEA

GO:0008286 "insulin receptor signaling pathway" evidence=IEA

GO:0046935 "1-phosphatidylinositol-3-kinase regulator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q64143	P55G_MOUSE	No assigned EC number	0.5714	0.7432	0.2386	yes	N/A
O46404	P55G_BOVIN	No assigned EC number	0.5714	0.7432	0.2386	yes	N/A
Q92569	P55G_HUMAN	No assigned EC number	0.5714	0.7432	0.2386	yes	N/A
Q63789	P55G_RAT	No assigned EC number	0.5625	0.7432	0.2386	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	148
cd09930	104	cd09930, SH2_cSH2_p85_like, C-terminal Src homolog	3e-58
smart00252	84	smart00252, SH2, Src homology 2 domains	1e-19
cd00173	79	cd00173, SH2, Src homology 2 (SH2) domain	6e-19
cd09940	102	cd09940, SH2_Vav_family, Src homology 2 (SH2) doma	6e-18
pfam00017	77	pfam00017, SH2, SH2 domain	3e-17
cd09942	110	cd09942, SH2_nSH2_p85_like, N-terminal Src homolog	1e-15
cd09932	104	cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src	4e-11
cd10341	99	cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src	4e-10
cd09923	81	cd09923, SH2_SOCS_family, Src homology 2 (SH2) dom	8e-10
cd10405	103	cd10405, SH2_Vav1, Src homology 2 (SH2) domain fou	1e-09
cd10355	92	cd10355, SH2_DAPP1_BAM32_like, Src homology 2 doma	2e-09
cd10406	103	cd10406, SH2_Vav2, Src homology 2 (SH2) domain fou	2e-09
cd10407	103	cd10407, SH2_Vav3, Src homology 2 (SH2) domain fou	4e-09
cd09925	104	cd09925, SH2_SHC, Src homology 2 (SH2) domain foun	5e-09
cd09935	94	cd09935, SH2_ABL, Src homology 2 (SH2) domain foun	9e-09
cd09933	101	cd09933, SH2_Src_family, Src homology 2 (SH2) doma	1e-08
cd10352	91	cd10352, SH2_a2chimerin_b2chimerin, Src homology 2	6e-08
cd10347	81	cd10347, SH2_Nterm_shark_like, N-terminal Src homo	6e-08
cd09937	98	cd09937, SH2_csk_like, Src homology 2 (SH2) domain	3e-07
cd10344	104	cd10344, SH2_SLAP, Src homology 2 domain found in	2e-06
cd10386	81	cd10386, SH2_SOCS5, Src homology 2 (SH2) domain fo	4e-06
cd10369	96	cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain	7e-06
cd09931	99	cd09931, SH2_C-SH2_SHP_like, C-terminal Src homolo	8e-06
cd09945	98	cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2	1e-05
cd10357	87	cd10357, SH2_ShkD_ShkE, Src homology 2 (SH2) domai	1e-05
cd09927	116	cd09927, SH2_Tensin_like, Src homology 2 domain fo	2e-05
cd09943	93	cd09943, SH2_Nck_family, Src homology 2 (SH2) doma	3e-05
cd09941	95	cd09941, SH2_Grb2_like, Src homology 2 domain foun	3e-05
cd09934	104	cd09934, SH2_Tec_family, Src homology 2 (SH2) doma	6e-05
cd10391	98	cd10391, SH2_SHE, Src homology 2 domain found in S	6e-05
cd10361	90	cd10361, SH2_Fps_family, Src homology 2 (SH2) doma	6e-05
cd10388	101	cd10388, SH2_SOCS7, Src homology 2 (SH2) domain fo	2e-04
cd10399	106	cd10399, SH2_Tec_Bmx, Src homology 2 (SH2) domain	3e-04
cd10348	86	cd10348, SH2_Cterm_shark_like, C-terminal Src homo	3e-04
cd10360	79	cd10360, SH2_Srm, Src homology 2 (SH2) domain foun	3e-04
cd10387	100	cd10387, SH2_SOCS6, Src homology 2 (SH2) domain fo	3e-04
cd10366	101	cd10366, SH2_Src_Yes, Src homology 2 (SH2) domain	3e-04
cd10367	101	cd10367, SH2_Src_Fgr, Src homology 2 (SH2) domain	4e-04
cd10356	113	cd10356, SH2_ShkA_ShkC, Src homology 2 (SH2) domai	4e-04
cd09926	106	cd09926, SH2_CRK_like, Src homology 2 domain found	6e-04
cd10354	77	cd10354, SH2_Cterm_RasGAP, C-terminal Src homology	0.001
cd10368	101	cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain	0.001
cd10385	101	cd10385, SH2_SOCS4, Src homology 2 (SH2) domain fo	0.001
cd10363	104	cd10363, SH2_Src_HCK, Src homology 2 (SH2) domain	0.001
cd09918	85	cd09918, SH2_Nterm_SPT6_like, N-terminal Src homol	0.002
cd09944	108	cd09944, SH2_Grb7_family, Src homology 2 (SH2) dom	0.002
cd10419	101	cd10419, SH2_Src_Fyn_isoform_b_like, Src homology	0.002
cd10390	98	cd10390, SH2_SHD, Src homology 2 domain found in S	0.003
cd09946	102	cd09946, SH2_HSH2_like, Src homology 2 domain foun	0.004

>gnl|CDD|198184 cd09930, SH2_cSH2_p85_like, C-terminal Src homology 2 (cSH2) domain found in p85

 Score =  175 bits (446), Expect = 3e-58
 Identities = 70/104 (67%), Positives = 84/104 (80%), Gaps = 2/104 (1%)

Query: 39  PHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETE 96
           PHHDE+TWLV  ++R QAE LL G+PDGTFLIR S+T G YA S+VC+G  KHC++Y+TE
Sbjct: 1   PHHDERTWLVGDINRTQAEELLRGKPDGTFLIRESSTQGCYACSVVCNGEVKHCVIYKTE 60

Query: 97  RGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
            G+GFAEP+N+Y SL  LVLHYA NSLE+HND L  TLAYPV A
Sbjct: 61  TGYGFAEPYNLYESLKELVLHYAHNSLEQHNDSLTVTLAYPVLA 104

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, a inter SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and 2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, 2) p85 iSH2 domain with C2 domain of p110alpha, and 3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|214585 smart00252, SH2, Src homology 2 domains

 Score = 77.3 bits (191), Expect = 1e-19
 Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
            +SR +AE LL    DG FL+R S +  G Y LS+   G  KH  +   E G  + E   
Sbjct: 7   FISREEAEKLLKNEGDGDFLVRDSESSPGDYVLSVRVKGKVKHYRIRRNEDGKFYLEGGR 66

Query: 107 IYPSLGALVLHYAANSL 123
            +PSL  LV HY  NSL
Sbjct: 67  KFPSLVELVEHYQKNSL 83

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae. Length = 84

>gnl|CDD|198173 cd00173, SH2, Src homology 2 (SH2) domain

 Score = 75.2 bits (185), Expect = 6e-19
 Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 4/74 (5%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVC-SGAPKHCLVYETERGFGFA-EP 104
            +SR +AE LL G+PDGTFL+R S++  G Y LS+    G  KH L+   E G+      
Sbjct: 6   SISREEAERLLRGKPDGTFLVRESSSEPGDYVLSVRSGDGKVKHYLIERNEGGYYLLGGS 65

Query: 105 FNIYPSLGALVLHY 118
              +PSL  LV HY
Sbjct: 66  GRTFPSLPELVEHY 79

In general, SH2 domains are involved in signal transduction; they bind pTyr-containing polypeptide ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. They are present in a wide array of proteins including: adaptor proteins (Nck1, Crk, Grb2), scaffolds (Slp76, Shc, Dapp1), kinases (Src, Syk, Fps, Tec), phosphatases (Shp-1, Shp-2), transcription factors (STAT1), Ras signaling molecules (Ras-Gap), ubiquitination factors (c-Cbl), cytoskeleton regulators (Tensin), signal regulators (SAP), and phospholipid second messengers (PLCgamma), amongst others. Length = 79

>gnl|CDD|198193 cd09940, SH2_Vav_family, Src homology 2 (SH2) domain found in the Vav family

 Score = 73.5 bits (181), Expect = 6e-18
 Identities = 40/99 (40%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 43  EKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTTG--QYALSIVCSGAPKHCLVYETERGF 99
           E  W V  M R  AE  L  RPDGT+L+R    G  QYALSI  +G  KH  + +   G 
Sbjct: 4   EFLWFVGEMERDTAENRLENRPDGTYLVRVRPQGETQYALSIKYNGDVKHMKIEQRSDGL 63

Query: 100 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            +      + SL  LV +Y  NSL E+   L TTL +P 
Sbjct: 64  YYLSESRHFKSLVELVNYYERNSLGENFAGLDTTLKWPY 102

Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, Vav2 and Vav3 are more ubiquitously expressed. The members here include insect and amphibian Vavs. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|215658 pfam00017, SH2, SH2 domain

 Score = 70.7 bits (174), Expect = 3e-17
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 50  MSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAEP 104
           +SR +AE LL + +PDGTFL+R S +  G Y LS+   G  KH  +   + G  +     
Sbjct: 6   ISREEAERLLLNPKPDGTFLVRESESKPGDYTLSVRDDGRVKHYRIQSLDNGGYYISGGV 65

Query: 105 FNIYPSLGALVLHY 118
              + SL  LV HY
Sbjct: 66  T--FNSLPELVEHY 77

Length = 77

>gnl|CDD|198195 cd09942, SH2_nSH2_p85_like, N-terminal Src homology 2 (nSH2) domain found in p85

 Score = 67.7 bits (166), Expect = 1e-15
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
            +SR +    +   PDGTFL+R ++T  G Y L++   G  K   ++  +  +GF++P  
Sbjct: 13  DISREEVNEKMRDTPDGTFLVRDASTMKGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLT 72

Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + S+  L+ +Y  NSL E+N  L   L YPV
Sbjct: 73  -FNSVVELINYYRNNSLAEYNRKLDVKLLYPV 103

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, an internal SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and (2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, (2) p85 iSH2 domain with C2 domain of p110alpha, and (3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 110

>gnl|CDD|198186 cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src homology 2 (C-SH2) domain in Phospholipase C gamma

 Score = 55.7 bits (135), Expect = 4e-11
 Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 41  HDEKTW-LVRMSRAQAEALLSGRP-DGTFLIRPSTTGQ--YALSIVCSGAPKHCLVYETE 96
           H+ K W    ++R QAE +L   P DG FL+RPS T    +A+S    G  KHC + +  
Sbjct: 1   HESKEWFHANLTREQAEEMLMRVPRDGAFLVRPSETDPNSFAISFRAEGKIKHCRIKQEG 60

Query: 97  RGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
           R F      + + SL  LV +Y  + L       K  L YPV
Sbjct: 61  RLFVIGT--SQFESLVELVSYYEKHPLYR-----KIKLRYPV 95

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|199829 cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src homology 2 (N-SH2) domain in Phospholipase C gamma

 Score = 53.1 bits (128), Expect = 4e-10
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 10/81 (12%)

Query: 52  RAQAEALLS---GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYET----ERGFGFA 102
           R +AE LL       DGTFL+R S T  G Y LS   +G  +HC +       E+ +   
Sbjct: 15  RDEAEKLLLEYCEGGDGTFLVRESETFVGDYTLSFWRNGKVQHCRIRSRQENGEKKYYLT 74

Query: 103 EPFNIYPSLGALVLHYAANSL 123
           +   ++ SL  L+ +Y  N L
Sbjct: 75  DNL-VFDSLYELIDYYRQNPL 94

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198178 cd09923, SH2_SOCS_family, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) family

 Score = 51.8 bits (125), Expect = 8e-10
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 7/76 (9%)

Query: 50  MSRAQAEALLSGRPDGTFLIRPSTTGQY--ALSIVCSGAPKHC-LVYETERGFGF-AEPF 105
           ++R +AE LL+G+P+GTFL+R S+  +Y  ++S    G   H  + Y   R F F +   
Sbjct: 7   ITRYEAEELLAGKPEGTFLVRDSSDSRYLFSVSFRTYGRTLHARIEYSNGR-FSFDSSDP 65

Query: 106 NI--YPSLGALVLHYA 119
           ++  +P +  L+ HY 
Sbjct: 66  SVPRFPCVVELIEHYV 81

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|198268 cd10405, SH2_Vav1, Src homology 2 (SH2) domain found in the Vav1 proteins

 Score = 52.3 bits (125), Expect = 1e-09
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 50  MSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 107
           M RA AE++L+ R DGT+L+R       ++A+SI  +   KH  +   E  +   E    
Sbjct: 12  MERAGAESILANRSDGTYLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEK-KA 70

Query: 108 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
           +  L  LV  Y  NSL++    L TTL +P
Sbjct: 71  FRGLTELVEFYQQNSLKDCFKSLDTTLQFP 100

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav1 plays a role in T-cell and B-cell development and activation. It has been identified as the specific binding partner of Nef proteins from HIV-1, resulting in morphological changes, cytoskeletal rearrangements, and the JNK/SAPK signaling cascade, leading to increased levels of viral transcription and replication. Vav1 has been shown to interact with Ku70, PLCG1, Lymphocyte cytosolic protein 2, Janus kinase 2, SIAH2, S100B, Abl gene, ARHGDIB, SHB, PIK3R1, PRKCQ, Grb2, MAPK1, Syk, Linker of activated T cells, Cbl gene and EZH2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198218 cd10355, SH2_DAPP1_BAM32_like, Src homology 2 domain found in dual adaptor for phosphotyrosine and 3-phosphoinositides ( DAPP1)/B lymphocyte adaptor molecule of 32 kDa (Bam32)-like proteins

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 50  MSRAQAEA-LLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
           ++R  AEA LLS   DG++L+R S   TG ++LS+    + KH  V  T   F F   FN
Sbjct: 13  LTRHAAEALLLSNGVDGSYLLRNSNEGTGLFSLSVRAKDSVKHFHVEYTGYSFKFG--FN 70

Query: 107 IYPSLGALVLHYA 119
            + SL   V H+A
Sbjct: 71  EFSSLQDFVKHFA 83

DAPP1/Bam32 contains a putative myristoylation site at its N-terminus, followed by a SH2 domain, and a pleckstrin homology (PH) domain at its C-terminus. DAPP1 could potentially be recruited to the cell membrane by any of these domains. Its putative myristoylation site could facilitate the interaction of DAPP1 with the lipid bilayer. Its SH2 domain may also interact with phosphotyrosine residues on membrane-associated proteins such as activated tyrosine kinase receptors. And finally its PH domain exhibits a high-affinity interaction with the PtdIns(3,4,5)P(3) PtdIns(3,4)P(2) second messengers produced at the cell membrane following the activation of PI 3-kinases. DAPP1 is thought to interact with both tyrosine phosphorylated proteins and 3-phosphoinositides and therefore may play a role in regulating the location and/or activity of such proteins(s) in response to agonists that elevate PtdIns(3,4,5)P(3) and PtdIns(3,4)P(2). This protein is likely to play an important role in triggering signal transduction pathways that lie downstream from receptor tyrosine kinases and PI 3-kinase. It is likely that DAPP1 functions as an adaptor to recruit other proteins to the plasma membrane in response to extracellular signals. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 92

>gnl|CDD|198269 cd10406, SH2_Vav2, Src homology 2 (SH2) domain found in the Vav2 proteins

 Score = 51.2 bits (122), Expect = 2e-09
 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 50  MSRAQAEALLSGRPDGTFLIR--PSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 107
           M R Q + LL     GT+LIR  P+   ++A+SI  +   KH  V E +      E    
Sbjct: 12  MERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEA-KK 70

Query: 108 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
           + SL  LV +Y  +SL+E    L TTL YP
Sbjct: 71  FESLLELVEYYQCHSLKESFKQLDTTLKYP 100

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav2 is a GEF for RhoA, RhoB and RhoG and may activate Rac1 and Cdc42. Vav2 has been shown to interact with CD19 and Grb2. Alternatively spliced transcript variants encoding different isoforms have been found for Vav2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198270 cd10407, SH2_Vav3, Src homology 2 (SH2) domain found in the Vav3 proteins

 Score = 50.8 bits (121), Expect = 4e-09
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 50  MSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 107
           M R QAE  L  R + T+L+R  T  +G+YA+SI  +   KH  +   +  F  AE    
Sbjct: 12  MERLQAETELINRVNSTYLVRHRTKESGEYAISIKYNNEVKHIKILTRDGFFHIAENRK- 70

Query: 108 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
           + SL  LV +Y  +SL+E    L TTL +P
Sbjct: 71  FKSLMELVEYYKHHSLKEGFRSLDTTLQFP 100

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav3 preferentially activates RhoA, RhoG and, to a lesser extent, Rac1. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. VAV3 has been shown to interact with Grb2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198179 cd09925, SH2_SHC, Src homology 2 (SH2) domain found in SH2 adaptor protein C (SHC)

 Score = 50.4 bits (121), Expect = 5e-09
 Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 4/45 (8%)

Query: 49 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCL 91
          +MSR  AE+LL  + DG FL+R STT  GQY L+ + +G PKH L
Sbjct: 13 KMSRRDAESLL--QTDGDFLVRESTTTPGQYVLTGMQNGQPKHLL 55

SHC is involved in a wide variety of pathways including regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. An adapter protein, SHC has been implicated in Ras activation following the stimulation of a number of different receptors, including growth factors [insulin, epidermal growth factor (EGF), nerve growth factor, and platelet derived growth factor (PDGF)], cytokines [interleukins 2, 3, and 5], erythropoietin, and granulocyte/macrophage colony-stimulating factor, and antigens [T-cell and B-cell receptors]. SHC has been shown to bind to tyrosine-phosphorylated receptors, and receptor stimulation leads to tyrosine phosphorylation of SHC. Upon phosphorylation, SHC interacts with another adapter protein, Grb2, which binds to the Ras GTP/GDP exchange factor mSOS which leads to Ras activation. SHC is composed of an N-terminal domain that interacts with proteins containing phosphorylated tyrosines, a (glycine/proline)-rich collagen-homology domain that contains the phosphorylated binding site, and a C-terminal SH2 domain. SH2 has been shown to interact with the tyrosine-phosphorylated receptors of EGF and PDGF and with the tyrosine-phosphorylated C chain of the T-cell receptor, providing one of the mechanisms of T-cell-mediated Ras activation. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198189 cd09935, SH2_ABL, Src homology 2 (SH2) domain found in Abelson murine lymphosarcoma virus (ABL) proteins

 Score = 49.3 bits (118), Expect = 9e-09
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
            +SR  AE LLS   +G+FL+R S +  GQY++S+   G   H  + E   G  +    +
Sbjct: 9   PISRNAAEYLLSSGINGSFLVRESESSPGQYSISLRYDGRVYHYRISEDSDGKVYVTQEH 68

Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
            + +L  LV H++ N+     D L TTL YP
Sbjct: 69  RFNTLAELVHHHSKNA-----DGLITTLRYP 94

ABL-family proteins are highly conserved tyrosine kinases. Each ABL protein contains an SH3-SH2-TK (Src homology 3-Src homology 2-tyrosine kinase) domain cassette, which confers autoregulated kinase activity and is common among nonreceptor tyrosine kinases. Several types of posttranslational modifications control ABL catalytic activity, subcellular localization, and stability, with consequences for both cytoplasmic and nuclear ABL functions. Binding partners provide additional regulation of ABL catalytic activity, substrate specificity, and downstream signaling. By combining this cassette with actin-binding and -bundling domain, ABL proteins are capable of connecting phosphoregulation with actin-filament reorganization. Vertebrate paralogs, ABL1 and ABL2, have evolved to perform specialized functions. ABL1 includes nuclear localization signals and a DNA binding domain which is used to mediate DNA damage-repair functions, while ABL2 has additional binding capacity for actin and for microtubules to enhance its cytoskeletal remodeling functions. SH2 is involved in several autoinhibitory mechanism that constrain the enzymatic activity of the ABL-family kinases. In one mechanism SH2 and SH3 cradle the kinase domain while a cap sequence stabilizes the inactive conformation resulting in a locked inactive state. Another involves phosphatidylinositol 4,5-bisphosphate (PIP2) which binds the SH2 domain through residues normally required for phosphotyrosine binding in the linker segment between the SH2 and kinase domains. The SH2 domain contributes to ABL catalytic activity and target site specificity. It is thought that the ABL catalytic site and SH2 pocket have coevolved to recognize the same sequences. Recent work now supports a hierarchical processivity model in which the substrate target site most compatible with ABL kinase domain preferences is phosphorylated with greatest efficiency. If this site is compatible with the ABL SH2 domain specificity, it will then reposition and dock in the SH2 pocket. This mechanism also explains how ABL kinases phosphorylates poor targets on the same substrate if they are properly positioned and how relatively poor substrate proteins might be recruited to ABL through a complex with strong substrates that can also dock with the SH2 pocket. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 94

>gnl|CDD|199827 cd09933, SH2_Src_family, Src homology 2 (SH2) domain found in the Src family of non-receptor tyrosine kinases

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 14/104 (13%)

Query: 43  EKTWLVRMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVY 93
           E+ +  ++ R  AE LL   G P GTFLIR S T  G Y+LS+           KH  + 
Sbjct: 3   EEWFFGKIKRKDAEKLLLAPGNPRGTFLIRESETTPGAYSLSVRDGDDARGDTVKHYRIR 62

Query: 94  ETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
           + + G  +      +P+L  LV HY      +  D L   L  P
Sbjct: 63  KLDNGGYYITTRATFPTLQELVQHY-----SKDADGLCCRLTVP 101

The Src family kinases are nonreceptor tyrosine kinases that have been implicated in pathways regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. It is thought that transforming ability of Src is linked to its ability to activate key signaling molecules in these pathways, rather than through direct activity. As such blocking Src activation has been a target for drug companies. Src family members can be divided into 3 groups based on their expression pattern: 1) Src, Fyn, and Yes; 2) Blk, Fgr, Hck, Lck, and Lyn; and 3) Frk-related kinases Frk/Rak and Iyk/Bsk Of these, cellular c-Src is the best studied and most frequently implicated in oncogenesis. The c-Src contains five distinct regions: a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Src exists in both active and inactive conformations. Negative regulation occurs through phosphorylation of Tyr, resulting in an intramolecular association between phosphorylated Tyr and the SH2 domain of SRC, which locks the protein in a closed conformation. Further stabilization of the inactive state occurs through interactions between the SH3 domain and a proline-rich stretch of residues within the kinase domain. Conversely, dephosphorylation of Tyr allows SRC to assume an open conformation. Full activity requires additional autophosphorylation of a Tyr residue within the catalytic domain. Loss of the negative-regulatory C-terminal segment has been shown to result in increased activity and transforming potential. Phosphorylation of the C-terminal Tyr residue by C-terminal Src kinase (Csk) and Csk homology kinase results in increased intramolecular interactions and consequent Src inactivation. Specific phosphatases, protein tyrosine phosphatase a (PTPa) and the SH-containing phosphatases SHP1/SHP2, have also been shown to take a part in Src activation. Src is also activated by direct binding of focal adhesion kinase (Fak) and Crk-associated substrate (Cas) to the SH2 domain. SRC activity can also be regulated by numerous receptor tyrosine kinases (RTKs), such as Her2, epidermal growth factor receptor (EGFR), fibroblast growth factor receptor, platelet-derived growth factor receptor (PDGFR), and vascular endothelial growth factor receptor (VEGFR). In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198215 cd10352, SH2_a2chimerin_b2chimerin, Src homology 2 (SH2) domain found in alpha2-chimerin and beta2-chimerin proteins

 Score = 47.4 bits (113), Expect = 6e-08
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 50 MSRAQAEALLSGRPDGTFLIR--PSTTGQYALSIVCSGAPKHCLVY 93
          +SR +AE LLSG  DG++LIR      G Y LS+  +G  K+  +Y
Sbjct: 13 ISREEAEQLLSGASDGSYLIRESSRDDGYYTLSLRFNGKVKNYKLY 58

Chimerins are a family of phorbol ester- and diacylglycerol-responsive GTPase-activating proteins. Alpha1-chimerin (formerly known as n-chimerin) and alpha2-chimerin are alternatively spliced products of a single gene, as are beta1- and beta2-chimerin. alpha1- and beta1-chimerin have a relatively short N-terminal region that does not encode any recognizable domains, whereas alpha2- and beta2-chimerin both include a functional SH2 domain that can bind to phosphotyrosine motifs within receptors. All of the isoforms contain a GAP domain with specificity in vitro for Rac1 and a diacylglycerol (DAG)-binding C1 domain which allows them to translocate to membranes in response to DAG signaling and anchors them in close proximity to activated Rac. Other C1 domain-containing diacylglycerol receptors including: PKC, Munc-13 proteins, phorbol ester binding scaffolding proteins involved in Ca2+-stimulated exocytosis, and RasGRPs, diacylglycerol-activated guanine-nucleotide exchange factors (GEFs) for Ras and Rap1. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 91

>gnl|CDD|198210 cd10347, SH2_Nterm_shark_like, N-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins

 Score = 47.0 bits (112), Expect = 6e-08
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 11/78 (14%)

Query: 49  RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETER----GFG 100
           ++SR  AEALL   G  DG FL+R ST+  G Y LS++  G   H   Y+  R     F 
Sbjct: 7   KISREVAEALLLREGGRDGLFLVRESTSAPGDYVLSLLAQGEVLH---YQIRRHGEDAFF 63

Query: 101 FAEPFNIYPSLGALVLHY 118
             +   I+  L  L+ HY
Sbjct: 64  SDDGPLIFHGLDTLIEHY 81

These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in the carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|198190 cd09937, SH2_csk_like, Src homology 2 (SH2) domain found in Carboxyl-Terminal Src Kinase (Csk)

 Score = 45.7 bits (109), Expect = 3e-07
 Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
           ++SR +AE LL    DG FL+R ST   G Y L +   G  +H  V          E   
Sbjct: 9   KISREEAERLLQPPEDGLFLVRESTNYPGDYTLCVSFEGKVEHYRVIYRNGKLTIDEE-E 67

Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + +L  LV HY  ++     D L T L  P 
Sbjct: 68  YFENLIQLVEHYTKDA-----DGLCTRLVKPK 94

Both the C-terminal Src kinase (CSK) and CSK-homologous kinase (CHK) are members of the CSK-family of protein tyrosine kinases. These proteins suppress activity of Src-family kinases (SFK) by selectively phosphorylating the conserved C-terminal tail regulatory tyrosine by a similar mechanism. CHK is also capable of inhibiting SFKs by a non-catalytic mechanism that involves binding of CHK to SFKs to form stable protein complexes. The unphosphorylated form of SFKs is inhibited by CSK and CHK by a two-step mechanism. The first step involves the formation of a complex of SFKs with CSK/CHK with the SFKs in the complex are inactive. The second step, involves the phosphorylation of the C-terminal tail tyrosine of SFKs, which then dissociates and adopt an inactive conformation. The structural basis of how the phosphorylated SFKs dissociate from CSK/CHK to adopt the inactive conformation is not known. The inactive conformation of SFKs is stabilized by two intramolecular inhibitory interactions: (a) the pYT:SH2 interaction in which the phosphorylated C-terminal tail tyrosine (YT) binds to the SH2 domain, and (b) the linker:SH3 interaction of which the SH2-kinase domain linker binds to the SH3 domain. SFKs are activated by multiple mechanisms including binding of the ligands to the SH2 and SH3 domains to displace the two inhibitory intramolecular interactions, autophosphorylation, and dephosphorylation of YT. By selective phosphorylation and the non-catalytic inhibitory mechanism CSK and CHK are able to inhibit the active forms of SFKs. CSK and CHK are regulated by phosphorylation and inter-domain interactions. They both contain SH3, SH2, and kinase domains separated by the SH3-SH2 connector and SH2 kinase linker, intervening segments separating the three domains. They lack a conserved tyrosine phosphorylation site in the kinase domain and the C-terminal tail regulatory tyrosine phosphorylation site. The CSK SH2 domain is crucial for stabilizing the kinase domain in the active conformation. A disulfide bond here regulates CSK kinase activity. The subcellular localization and activity of CSK are regulated by its SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198207 cd10344, SH2_SLAP, Src homology 2 domain found in Src-like adaptor proteins

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 46  WL-VRMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYET 95
           WL   +SR +AE LL   G   G+FLIR S T  G Y+LS+   G+      KH  ++  
Sbjct: 12  WLFEGLSREKAEELLMLPGNQVGSFLIRESETRRGCYSLSVRHRGSQSRDSVKHYRIFRL 71

Query: 96  ERGFGFAEPFNIYPSLGALVLHYAANS 122
           + G+ +  P   +  L  +V HY+ ++
Sbjct: 72  DNGWFYISPRLTFQCLEDMVNHYSESA 98

SLAP belongs to the subfamily of adapter proteins that negatively regulate cellular signaling initiated by tyrosine kinases. It has a myristylated N-terminus, SH3 and SH2 domains with high homology to Src family tyrosine kinases, and a unique C-terminal tail, which is important for c-Cbl binding. SLAP negatively regulates platelet-derived growth factor (PDGF)-induced mitogenesis in fibroblasts and regulates F-actin assembly for dorsal ruffles formation. c-Cbl mediated SLAP inhibition towards actin remodeling. Moreover, SLAP enhanced PDGF-induced c-Cbl phosphorylation by SFK. In contrast, SLAP mitogenic inhibition was not mediated by c-Cbl, but it rather involved a competitive mechanism with SFK for PDGF-receptor (PDGFR) association and mitogenic signaling. Accordingly, phosphorylation of the Src mitogenic substrates Stat3 and Shc were reduced by SLAP. Thus, we concluded that SLAP regulates PDGFR signaling by two independent mechanisms: a competitive mechanism for PDGF-induced Src mitogenic signaling and a non-competitive mechanism for dorsal ruffles formation mediated by c-Cbl. SLAP is a hematopoietic adaptor containing Src homology (SH)3 and SH2 motifs and a unique carboxy terminus. Unlike c-Src, SLAP lacks a tyrosine kinase domain. Unlike c-Src, SLAP does not impact resorptive function of mature osteoclasts but induces their early apoptosis. SLAP negatively regulates differentiation of osteoclasts and proliferation of their precursors. Conversely, SLAP decreases osteoclast death by inhibiting activation of caspase 3. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198249 cd10386, SH2_SOCS5, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) family

 Score = 42.0 bits (98), Expect = 4e-06
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 50 MSRAQAEALLSGRPDGTFLIRPSTTGQYALSI 81
          M R +AEALL G+P+GTFL+R S    Y  S+
Sbjct: 7  MDRYEAEALLEGKPEGTFLLRDSAQEDYLFSV 38

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|199831 cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain found in the Fyn-related kinase (Frk)

 Score = 41.8 bits (98), Expect = 7e-06
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 50  MSRAQAEA--LLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
           + RA AE   L S    G FLIR S +  G+++LS++  G  KH  +   + G  F    
Sbjct: 10  IKRADAEKQLLYSENQTGAFLIRESESQKGEFSLSVLDGGVVKHYRIRRLDEGGFFLTRR 69

Query: 106 NIYPSLGALVLHYAANS 122
             + +L   V +Y   S
Sbjct: 70  KTFSTLNEFVNYYTTTS 86

Frk is a member of the Src non-receptor type tyrosine kinase family of proteins. The Frk subfamily is composed of Frk/Rak and Iyk/Bsk/Gst. It is expressed primarily epithelial cells. Frk is a nuclear protein and may function during G1 and S phase of the cell cycle and suppress growth. Unlike the other Src members it lacks a glycine at position 2 of SH4 which is important for addition of a myristic acid moiety that is involved in targeting Src PTKs to cellular membranes. FRK and SHB exert similar effects when overexpressed in rat phaeochromocytoma (PC12) and beta-cells, where both induce PC12 cell differentiation and beta-cell proliferation. Under conditions that cause beta-cell degeneration these proteins augment beta-cell apoptosis. The FRK-SHB responses involve FAK and insulin receptor substrates (IRS) -1 and -2. Frk has been demonstrated to interact with retinoblastoma protein. Frk regulates PTEN protein stability by phosphorylating PTEN, which in turn prevents PTEN degradation. Frk also plays a role in regulation of embryonal pancreatic beta cell formation. Frk has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its activation loop. The tryosine involved is at the same site as the tyrosine involved in the autophosphorylation of Src. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 96

>gnl|CDD|198185 cd09931, SH2_C-SH2_SHP_like, C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins

 Score = 41.9 bits (99), Expect = 8e-06
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 11/85 (12%)

Query: 50  MSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAP-KHCLVYETERG---FGFA 102
           +S  +AE LL  +   G+FL+R S +  G + LS+        H ++   + G    G  
Sbjct: 7   LSGKEAEKLLLEKGKPGSFLVRESQSKPGDFVLSVRTDDDKVTHIMIR-CQGGKYDVGGG 65

Query: 103 EPFNIYPSLGALVLHYAANSLEEHN 127
           E F+   SL  LV HY  N + E +
Sbjct: 66  EEFD---SLTDLVEHYKKNPMVETS 87

The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [SIVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198198 cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2 domain found in SH2 domain-containing adapter proteins B, D, E, and F (SHB, SHD, SHE, SHF)

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 18/99 (18%)

Query: 50  MSRAQAEALLSGRPDGTFLIRPSTTGQ--YALSIVCSGAPKHCLVYETERG---FG-FAE 103
           ++R +AE+LL    +G++L+R S + +  Y+LS+  +    H  +   E G    G F+ 
Sbjct: 8   ITRIEAESLLRPCKEGSYLVRNSESTKQDYSLSLKSAKGFMHMRIQRNETGQYILGQFSR 67

Query: 104 PFNIYPSLGALVLHYAANSL----EEHNDDLKTTLAYPV 138
           PF    ++  ++ HY  N L     EH       L  PV
Sbjct: 68  PF---ETIPEMIRHYCLNKLPVRGAEH-----MCLLEPV 98

SHB, SHD, SHE, and SHF are SH2 domain-containing proteins that play various roles throughout the cell. SHB functions in generating signaling compounds in response to tyrosine kinase activation. SHB contains proline-rich motifs, a phosphotyrosine binding (PTB) domain, tyrosine phosphorylation sites, and a SH2 domain. SHB mediates certain aspects of platelet-derived growth factor (PDGF) receptor-, fibroblast growth factor (FGF) receptor-, neural growth factor (NGF) receptor TRKA-, T cell receptor-, interleukin-2 (IL-2) receptor- and focal adhesion kinase- (FAK) signaling. SRC-like FYN-Related Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB regulate apoptosis, proliferation and differentiation. SHB promotes apoptosis and is also required for proper mitogenicity, spreading and tubular morphogenesis in endothelial cells. SHB also plays a role in preventing early cavitation of embryoid bodies and reduces differentiation to cells expressing albumin, amylase, insulin and glucagon. SHB is a multifunctional protein that has difference responses in different cells under various conditions. SHE is expressed in heart, lung, brain, and skeletal muscle, while expression of SHD is restricted to the brain. SHF is mainly expressed in skeletal muscle, brain, liver, prostate, testis, ovary, small intestine, and colon. SHD may be a physiological substrate of c-Abl and may function as an adapter protein in the central nervous system. It is also thought to be involved in apoptotic regulation. SHD contains five YXXP motifs, a substrate sequence preferred by Abl tyrosine kinases, in addition to a poly-proline rich region and a C-terminal SH2 domain. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. SHF contains four putative tyrosine phosphorylation sites and an SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198220 cd10357, SH2_ShkD_ShkE, Src homology 2 (SH2) domain found in SH2 domain-bearing protein kinases D and E (ShkD and ShkE)

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 7/35 (20%)

Query: 40 HHDEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTT 74
          H D       +SR +AE  L GRP+GTFLIR S+T
Sbjct: 14 HGD-------ISRDEAEKRLRGRPEGTFLIRLSST 41

SH2-bearing genes cloned from Dictyostelium include two transcription factors, STATa and STATc, and a signaling factor, SHK1 (shkA). A database search of the Dictyostelium discoideum genome revealed two additional putative STAT sequences, dd-STATb and dd-STATd, and four additional putative SHK genes, dd-SHK2 (shkB), dd-SHK3 (shkC), dd-SHK4 (shkD), and dd-SHK5 (shkE). This model contains members of shkD and shkE. All of the SHK members are most closely related to the protein kinases found in plants. However these kinases in plants are not conjugated to any SH2 or SH2-like sequences. Alignment data indicates that the SHK SH2 domains carry some features of the STAT SH2 domains in Dictyostelium. When STATc's linker domain was used for a BLAST search, the sequence between the protein kinase domain and the SH2 domain (the linker) of SHK was recovered, suggesting a close relationship among these molecules within this region. SHK's linker domain is predicted to contain an alpha-helix which is indeed homologous to that of STAT. Based on the phylogenetic alignment, SH2 domains can be grouped into two categories, STAT-type and Src-type. SHK family members are in between, but are closer to the STAT-type which indicates a close relationship between SHK and STAT families in their SH2 domains and further supports the notion that SHKs linker-SH2 domain evolved from STAT or STATL (STAT-like Linker-SH2) domain found in plants. In SHK, STAT, and SPT6, the linker-SH2 domains all reside exclusively in the C-terminal regions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 87

>gnl|CDD|198181 cd09927, SH2_Tensin_like, Src homology 2 domain found in Tensin-like proteins

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 25/89 (28%)

Query: 50  MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAP-----------------KHC 90
           +SR QA ALL  +P GTFL+R STT  G Y L++  +  P                 +H 
Sbjct: 10  ISRDQAIALLKDKPPGTFLVRDSTTYKGAYGLAVKVATPPPGVNPFEAKGDPESELVRHF 69

Query: 91  LVYETERGF---GFA-EPFNIYPSLGALV 115
           L+  + +G    G   EP   + SL ALV
Sbjct: 70  LIEPSPKGVKLKGCPNEPV--FGSLSALV 96

SH2 domain found in Tensin-like proteins. The Tensins are a family of intracellular proteins that interact with receptor tyrosine kinases (RTKs), integrins, and actin. They are thought act as signaling bridges between the extracellular space and the cytoskeleton. There are four homologues: Tensin1, Tensin2 (TENC1, C1-TEN), Tensin3 and Tensin4 (cten), all of which contain a C-terminal tandem SH2-PTB domain pairing, as well as actin-binding regions that may localize them to focal adhesions. The isoforms of Tensin2 and Tensin3 contain N-terminal C1 domains, which are atypical and not expected to bind to phorbol esters. Tensins 1-3 contain a phosphatase (PTPase) and C2 domain pairing which resembles PTEN (phosphatase and tensin homologue deleted on chromosome 10) protein. PTEN is a lipid phosphatase that dephosphorylates phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) to yield phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). As PtdIns(3,4,5)P3 is the product of phosphatidylinositol 3-kinase (PI3K) activity, PTEN is therefore a key negative regulator of the PI3K pathway. Because of their PTEN-like domains, the Tensins may also possess phosphoinositide-binding or phosphatase capabilities. However, only Tensin2 and Tensin3 have the potential to be phosphatases since only their PTPase domains contain a cysteine residue that is essential for catalytic activity. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 116

>gnl|CDD|198196 cd09943, SH2_Nck_family, Src homology 2 (SH2) domain found in the Nck family

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 49  RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
           R++R QAE LL+    +G FLIR S +  G Y++S+   G  KH  V   +  +   +  
Sbjct: 7   RITRHQAETLLNEHGHEGDFLIRDSESNPGDYSVSLKAPGRNKHFKVQVVDNVYCIGQ-- 64

Query: 106 NIYPSLGALVLHYAA 120
             + ++  LV HY  
Sbjct: 65  RKFHTMDELVEHYKK 79

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 93

>gnl|CDD|199828 cd09941, SH2_Grb2_like, Src homology 2 domain found in Growth factor receptor-bound protein 2 (Grb2) and similar proteins

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 8/79 (10%)

Query: 49  RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERG--FGFAE 103
           ++SRA+AE +L   RPDG FLIR S  + G ++LS+      +H  V     G  F +  
Sbjct: 9   KISRAEAEEILMNQRPDGAFLIRESESSPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 68

Query: 104 PFNIYPSLGALVLHYAANS 122
            FN   SL  LV ++   S
Sbjct: 69  KFN---SLNELVDYHRTTS 84

The adaptor proteins here include homologs Grb2 in humans, Sex muscle abnormal protein 5 (Sem-5) in Caenorhabditis elegans, and Downstream of receptor kinase (drk) in Drosophila melanogaster. They are composed of one SH2 and two SH3 domains. Grb2/Sem-5/drk regulates the Ras pathway by linking the tyrosine kinases to the Ras guanine nucleotide releasing protein Sos, which converts Ras to the active GTP-bound state. The SH2 domain of Grb2/Sem-5/drk binds class II phosphotyrosyl peptides while its SH3 domain binds to Sos and Sos-derived, proline-rich peptides. Besides it function in Ras signaling, Grb2 is also thought to play a role in apoptosis. Unlike most SH2 structures in which the peptide binds in an extended conformation (such that the +3 peptide residue occupies a hydrophobic pocket in the protein, conferring a modest degree of selectivity), Grb2 forms several hydrogen bonds via main chain atoms with the side chain of +2 Asn. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 95

>gnl|CDD|198188 cd09934, SH2_Tec_family, Src homology 2 (SH2) domain found in Tec-like proteins

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 16/102 (15%)

Query: 46  WLVR-MSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIV--CSGAP--KHCLVYETERG 98
           W V  MSR +AE+LL     +G F++R S+T G Y +S+     G+P  KH  + +  R 
Sbjct: 8   WYVGDMSRQRAESLLKQEDKEGCFVVRNSSTKGLYTVSLFTKVPGSPHVKHYHIKQNARS 67

Query: 99  -FGFAEPFNIYPSLGALVLHYAANSLEEHND-DLKTTLAYPV 138
            F  AE    + ++  L+ +Y      +HN   L T L YPV
Sbjct: 68  EFYLAEKH-CFETIPELI-NY-----HQHNSGGLATRLKYPV 102

The Tec protein tyrosine kinase is the founding member of a family that includes Btk, Itk, Bmx, and Txk. The members have a PH domain, a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is involved in B-cell receptor signaling with mutations in Btk responsible for X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency (xid) in mice. Itk is involved in T-cell receptor signaling. Tec is expressed in both T and B cells, and is thought to function in activated and effector T lymphocytes to induce the expression of genes regulated by NFAT transcription factors. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198254 cd10391, SH2_SHE, Src homology 2 domain found in SH2 domain-containing adapter protein E (SHE)

 Score = 39.6 bits (92), Expect = 6e-05
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 12/96 (12%)

Query: 50  MSRAQAEALLSGRPDGTFLIRPSTTG--QYALSIVCSGAPKHCLVYET-ERGFGFAEPFN 106
           +SRA+AE+ L    + ++L+R S +G  +Y++++  S    H +V +T +  +   +   
Sbjct: 8   ISRAEAESRLQPCKEASYLVRNSESGNSKYSIALKTSQGCVHIIVAQTKDNKYTLNQTSA 67

Query: 107 IYPSLGALVLHYAANSL----EEHNDDLKTTLAYPV 138
           ++ S+  +V +Y+   L     EH      TL +PV
Sbjct: 68  VFDSIPEVVHYYSNEKLPFKGAEH-----MTLLHPV 98

SHE is expressed in heart, lung, brain, and skeletal muscle. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198224 cd10361, SH2_Fps_family, Src homology 2 (SH2) domain found in feline sarcoma, Fujinami poultry sarcoma, and fes-related (Fes/Fps/Fer) proteins

 Score = 39.0 bits (92), Expect = 6e-05
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 12/82 (14%)

Query: 50  MSRAQAEALLSGRPDGTFLIR-----PSTTGQYALSIVCSGAPKHCLVYETE-RGFGF-A 102
           + R  AE LL  + DG FL+R          +  LS+   G  +H ++   +   +    
Sbjct: 13  LPREDAEELL--KNDGDFLVRKTEPKGGGKRKLVLSVRWDGKIRHFVINRDDGGKYYIEG 70

Query: 103 EPFNIYPSLGALVLHYAANSLE 124
           + F    S+  L+ +Y      
Sbjct: 71  KSFK---SISELINYYQKTKEP 89

The Fps family consists of members Fps/Fes and Fer/Flk/Tyk3. They are cytoplasmic protein-tyrosine kinases implicated in signaling downstream from cytokines, growth factors and immune receptors. Fes/Fps/Fer contains three coiled-coil regions, an SH2 (Src-homology-2) and a TK (tyrosine kinase catalytic) domain signature. Members here include: Fps/Fes, Fer, Kin-31, and In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 90

>gnl|CDD|198251 cd10388, SH2_SOCS7, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 50 MSRAQAEALLSGRPDGTFLIRPSTTGQYALSI 81
          MS   AE +LS +PDG+FL+R S+  +Y  S+
Sbjct: 17 MSWEDAEKVLSNKPDGSFLVRDSSDDRYIFSL 48

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198262 cd10399, SH2_Tec_Bmx, Src homology 2 (SH2) domain found in Tec protein, Bmx

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 11/91 (12%)

Query: 42  DEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPST-TGQYALSIVC------SGAPKHCLV 92
           D   W    +SR+Q+E LL  +  +G F++R S+  G Y +S+         G  KH  V
Sbjct: 4   DAYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQVGMYTVSLFSKAVNDKKGTVKHYHV 63

Query: 93  YET-ERGFGFAEPFNIYPSLGALVLHYAANS 122
           +   E     AE +  + S+  L+ ++  NS
Sbjct: 64  HTNAENKLYLAENY-CFDSIPKLIHYHQHNS 93

A member of the Tec protein tyrosine kinase Bmx is expressed in the endothelium of large arteries, fetal endocardium, adult endocardium of the left ventricle, bone marrow, lung, testis, granulocytes, myeloid cell lines, and prostate cell lines. Bmx is involved in the regulation of Rho and serum response factor (SRF). Bmx has been shown to interact with PAK1, PTK2, PTPN21, and RUFY1. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains. It is not present in Txk and the type 1 splice form of the Drosophila homolog. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198211 cd10348, SH2_Cterm_shark_like, C-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 50  MSRAQAEALL--SGRPDGTFLIRPST--TGQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
           + R +A  +L      DG+FL+R S    G Y L++V      H  +   +  + + +  
Sbjct: 7   LDRNEAVEILKQKADADGSFLVRYSRRRPGGYVLTLVYENHVYHFEIQNRDDKWFYIDDG 66

Query: 106 NIYPSLGALVLHY 118
             + SL  L+ HY
Sbjct: 67  PYFESLEHLIEHY 79

These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in its carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 86

>gnl|CDD|198223 cd10360, SH2_Srm, Src homology 2 (SH2) domain found in Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristoylation sites (srm)

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 50  MSRAQAEALLSGRPD--GTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
           +SR QA+ LL   P+  G FLIRPS +  G Y+LS+       H  +     G  + +  
Sbjct: 7   ISRTQAQQLLLSPPNEPGAFLIRPSESSLGGYSLSVRAQAKVCHYRICMAPSGSLYLQKG 66

Query: 106 NIYPSLGALVLHY 118
            ++P L  L+ +Y
Sbjct: 67  RLFPGLEELLAYY 79

Srm is a nonreceptor protein kinase that has two SH2 domains, a SH3 domain, and a kinase domain with a tyrosine residue for autophosphorylation. However it lacks an N-terminal glycine for myristoylation and a C-terminal tyrosine which suppresses kinase activity when phosphorylated. Srm is most similar to members of the Tec family who other members include: Tec, Btk/Emb, and Itk/Tsk/Emt. However Srm differs in its N-terminal unique domain it being much smaller than in the Tec family and is closer to Src. Srm is thought to be a new family of nonreceptor tyrosine kinases that may be redundant in function. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 79

>gnl|CDD|198250 cd10387, SH2_SOCS6, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTTGQY--ALSIVCSGAPKHCLVYETERGFGFAEPFN 106
            ++R +AE  L+  PDG+FL+R S+  +Y  +LS    G   H  +  +   F F E  +
Sbjct: 16  PITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNGRFSFYEQPD 75

Query: 107 I--YPSLGALVLH 117
           +  + S+  L+ H
Sbjct: 76  VEGHTSIVDLIEH 88

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|198229 cd10366, SH2_Src_Yes, Src homology 2 (SH2) domain found in Yes

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 14/97 (14%)

Query: 43  EKTWLVRMSRAQAEALL--SGRPDGTFLIRPS--TTGQYALSI-----VCSGAPKHCLVY 93
           E+ +  +M R  AE LL   G   G FL+R S  T G Y+LSI     V     KH  + 
Sbjct: 3   EEWYFGKMGRKDAERLLLNPGNQRGIFLVRESETTKGAYSLSIRDWDEVRGDNVKHYKIR 62

Query: 94  ETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDL 130
           + + G  +      + +L  LV HY      EH D L
Sbjct: 63  KLDNGGYYITTRAQFDTLQKLVKHYT-----EHADGL 94

Yes is a member of the Src non-receptor type tyrosine kinase family of proteins. Yes is the cellular homolog of the Yamaguchi sarcoma virus oncogene. In humans it is encoded by the YES1 gene which maps to chromosome 18 and is in close proximity to thymidylate synthase. A corresponding Yes pseudogene has been found on chromosome 22. YES1 has been shown to interact with Janus kinase 2, CTNND1,RPL10, and Occludin. Yes1 has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198230 cd10367, SH2_Src_Fgr, Src homology 2 (SH2) domain found in Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog, Fgr

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 43 EKTWLVRMSRAQAEALL--SGRPDGTFLIRPS--TTGQYALSI 81
          E+ +  ++ R  AE  L   G P G FLIR S  T G Y+LSI
Sbjct: 3  EEWYFGKIGRKDAERQLLSPGNPRGAFLIRESETTKGAYSLSI 45

Fgr is a member of the Src non-receptor type tyrosine kinase family of proteins. The protein contains N-terminal sites for myristoylation and palmitoylation, a PTK domain, and SH2 and SH3 domains which are involved in mediating protein-protein interactions with phosphotyrosine-containing and proline-rich motifs, respectively. Fgr is expressed in B-cells and myeloid cells, localizes to plasma membrane ruffles, and functions as a negative regulator of cell migration and adhesion triggered by the beta-2 integrin signal transduction pathway. Multiple alternatively spliced variants, encoding the same protein, have been identified Fgr has been shown to interact with Wiskott-Aldrich syndrome protein. Fgr has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198219 cd10356, SH2_ShkA_ShkC, Src homology 2 (SH2) domain found in SH2 domain-bearing protein kinases A and C (ShkA and ShkC)

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%)

Query: 50 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAP-KH 89
          +S +++E  L+G+P+GTFL+R ST+  G Y +S V       H
Sbjct: 17 ISTSESENRLNGKPEGTFLVRFSTSEPGAYTISKVSKNGGISH 59

SH2-bearing genes cloned from Dictyostelium include two transcription factors, STATa and STATc, and a signaling factor, SHK1 (shkA). A database search of the Dictyostelium discoideum genome revealed two additional putative STAT sequences, dd-STATb and dd-STATd, and four additional putative SHK genes, dd-SHK2 (shkB), dd-SHK3 (shkC), dd-SHK4 (shkD), and dd-SHK5 (shkE). This model contains members of shkA and shkC. All of the SHK members are most closely related to the protein kinases found in plants. However these kinases in plants are not conjugated to any SH2 or SH2-like sequences. Alignment data indicates that the SHK SH2 domains carry some features of the STAT SH2 domains in Dictyostelium. When STATc's linker domain was used for a BLAST search, the sequence between the protein kinase domain and the SH2 domain (the linker) of SHK was recovered, suggesting a close relationship among these molecules within this region. SHK's linker domain is predicted to contain an alpha-helix which is indeed homologous to that of STAT. Based on the phylogenetic alignment, SH2 domains can be grouped into two categories, STAT-type and Src-type. SHK family members are in between, but are closer to the STAT-type which indicates a close relationship between SHK and STAT families in their SH2 domains and further supports the notion that SHKs linker-SH2 domain evolved from STAT or STATL (STAT-like Linker-SH2) domain found in plants. In SHK, STAT, and SPT6, the linker-SH2 domains all reside exclusively in the C-terminal regions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 113

>gnl|CDD|198180 cd09926, SH2_CRK_like, Src homology 2 domain found in cancer-related signaling adaptor protein CRK

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 42 DEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSI 81
          D  +W    MSR +A+ LL G+  G FL+R S+T  G Y LS+
Sbjct: 5  DRSSWYFGPMSRQEAQELLQGQRHGVFLVRDSSTIPGDYVLSV 47

SH2 domain in the CRK proteins. CRKI (SH2-SH3) and CRKII (SH2-SH3-SH3) are splicing isoforms of the oncoprotein CRK. CRKs regulate transcription and cytoskeletal reorganization for cell growth and motility by linking tyrosine kinases to small G proteins. The SH2 domain of CRK associates with tyrosine-phosphorylated receptors or components of focal adhesions, such as p130Cas and paxillin. CRK transmits signals to small G proteins through effectors that bind its SH3 domain, such as C3G, the guanine-nucleotide exchange factor (GEF) for Rap1 and R-Ras, and DOCK180, the GEF for Rac6. The binding of p130Cas to the CRK-C3G complex activates Rap1, leading to regulation of cell adhesion, and activates R-Ras, leading to JNK-mediated activation of cell proliferation, whereas the binding of CRK DOCK180 induces Rac1-mediated activation of cellular migration. The activity of the different splicing isoforms varies greatly with CRKI displaying substantial transforming activity, CRKII less so, and phosphorylated CRKII with no biological activity whatsoever. CRKII has a linker region with a phosphorylated Tyr and an additional C-terminal SH3 domain. The phosphorylated Tyr creates a binding site for its SH2 domain which disrupts the association between CRK and its SH2 target proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198217 cd10354, SH2_Cterm_RasGAP, C-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP)

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 49  RMSRAQAEALL-SGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
           ++SR +A  +L      G+FL+R S  T G Y+LS   +   KH  +  T     F    
Sbjct: 6   KISREEAYNMLVKVGGPGSFLVRESDNTPGDYSLSFRVNEGIKHFKIIPTGNN-QFMMGG 64

Query: 106 NIYPSLGALVLHY 118
             + SL  ++  Y
Sbjct: 65  RYFSSLDDVIDRY 77

RasGAP is part of the GAP1 family of GTPase-activating proteins. The protein is located in the cytoplasm and stimulates the GTPase activity of normal RAS p21, but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in RAS inactivation, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Alternative splicing results in two isoforms. The shorter isoform which lacks the N-terminal hydrophobic region, has the same activity, and is expressed in placental tissues. In general longer isoform contains 2 SH2 domains, a SH3 domain, a pleckstrin homology (PH) domain, and a calcium-dependent phospholipid-binding C2 domain. The C-terminus contains the catalytic domain of RasGap which catalyzes the activation of Ras by hydrolyzing GTP-bound active Ras into an inactive GDP-bound form of Ras. This model contains the C-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 77

>gnl|CDD|198231 cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain found in Fyn

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 43  EKTWLVRMSRAQAE-ALLS-GRPDGTFLIRPS--TTGQYALSI-----VCSGAPKHCLVY 93
           E+ +  ++ R  AE  LLS G P GTFLIR S  T G Y+LSI     +     KH  + 
Sbjct: 3   EEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIR 62

Query: 94  ETERGFGFAEPFNIYPSLGALVLHYA 119
           + + G  +      + +L  LV HY+
Sbjct: 63  KLDNGGYYITTRAQFETLQQLVQHYS 88

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198248 cd10385, SH2_SOCS4, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 50 MSRAQAEALLSGRPDGTFLIRPSTTGQYALSI 81
          M +  AEALL G+P+GTFL+R S    Y  S+
Sbjct: 17 MDKYAAEALLEGKPEGTFLLRDSAQEDYLFSV 48

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198226 cd10363, SH2_Src_HCK, Src homology 2 (SH2) domain found in HCK

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 15/102 (14%)

Query: 46  WLVR-MSRAQAEA--LLSGRPDGTFLIRPS--TTGQYALSI-----VCSGAPKHCLVYET 95
           W  + +SR  AE   L  G   G+F+IR S  T G Y+LS+           KH  +   
Sbjct: 5   WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPQHGDTVKHYKIRTL 64

Query: 96  ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
           + G  +  P + + +L  LV HY     ++ ND L   L+ P
Sbjct: 65  DNGGFYISPRSTFSTLQELVDHY-----KKGNDGLCQKLSVP 101

HCK is a member of the Src non-receptor type tyrosine kinase family of proteins and is expressed in hemopoietic cells. HCK is proposed to couple the Fc receptor to the activation of the respiratory burst. It may also play a role in neutrophil migration and in the degranulation of neutrophils. It has two different translational starts that have different subcellular localization. HCK has been shown to interact with BCR gene, ELMO1 Cbl gene, RAS p21 protein activator 1, RASA3, Granulocyte colony-stimulating factor receptor, ADAM15 and RAPGEF1. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its C-terminal tail. In general SH2 domains are involved in signal transduction. HCK has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198174 cd09918, SH2_Nterm_SPT6_like, N-terminal Src homology 2 (SH2) domain found in Spt6

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 50  MSRAQAEALLSGRPDGTFLIRPSTTGQYALSI---VCSGAPKHCLVYETERGFGFA 102
           ++  QAEA L  +  G  +IRPS+ G   L++   V  G  +H  + E  +   F+
Sbjct: 8   VNYKQAEAYLKSKDVGEVVIRPSSKGVDHLTVTWKVADGVYQHIDIEELNKENPFS 63

N-terminal SH2 domain in Spt6. Spt6 is an essential transcription elongation factor and histone chaperone that binds the C-terminal repeat domain (CTD) of RNA polymerase II. Spt6 contains a tandem SH2 domain with a novel structure and CTD-binding mode. The tandem SH2 domain binds to a serine 2-phosphorylated CTD peptide in vitro, whereas its N-terminal SH2 subdomain does not. CTD binding requires a positively charged crevice in the C-terminal SH2 subdomain, which lacks the canonical phospho-binding pocket of SH2 domains. The tandem SH2 domain is apparently required for transcription elongation in vivo as its deletion in cells is lethal in the presence of 6-azauracil. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 85

>gnl|CDD|198197 cd09944, SH2_Grb7_family, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 7 (Grb7) proteins

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 49 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG 98
           +SR +A  L+   G  DG FL+R S +  G + LS+      KH  +   E  
Sbjct: 11 GISRDEAARLIRQQGLVDGVFLVRESQSNPGAFVLSLKHGQKIKHYQIIPIEDE 64

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. There are 3 members of the Grb7 family of proteins: Grb7, Grb10, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb7 binds strongly to the erbB2 receptor, unlike Grb10 and Grb14 which bind weakly to it. Grb14 binds to Fibroblast Growth Factor Receptor (FGFR). Grb10 has been shown to interact with many different proteins, including the insulin and IGF1 receptors, platelet-derived growth factor (PDGF) receptor-beta, Ret, Kit, Raf1 and MEK1, and Nedd4. Grb7 family proteins are phosphorylated on serine/threonine as well as tyrosine residues. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198282 cd10419, SH2_Src_Fyn_isoform_b_like, Src homology 2 (SH2) domain found in Fyn isoform b like proteins

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 10/89 (11%)

Query: 44  KTWLV-RMSRAQAE-ALLS-GRPDGTFLIRPS--TTGQYALSI-----VCSGAPKHCLVY 93
           + W   ++ R  AE  LLS G P GTFLIR S  T G Y+LSI     +     KH  + 
Sbjct: 3   EEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIR 62

Query: 94  ETERGFGFAEPFNIYPSLGALVLHYAANS 122
           + + G  +      + +L  LV HY+  +
Sbjct: 63  KLDNGGYYITTRAQFETLQQLVQHYSEKA 91

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. This cd contains the SH2 domain found in Fyn isoform b type proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198253 cd10390, SH2_SHD, Src homology 2 domain found in SH2 domain-containing adapter proteins D (SHD)

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 50  MSRAQAEALLSGRPDGTFLIRPSTTGQY--ALSIVCSGAPKHCLVYET-ERGFGFAEPFN 106
           +SRA AE LLS   +G++L+R S T     +LS+  S    H     T E      +   
Sbjct: 8   LSRADAENLLSLCKEGSYLVRLSETRPQDCSLSLRSSQGFLHLKFARTRENQVVLGQHSG 67

Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            +PS+  LVLHY++  L     +    L YPV
Sbjct: 68  PFPSVPELVLHYSSRPLPVQGAE-HLALLYPV 98

The expression of SHD is restricted to the brain. SHD may be a physiological substrate of c-Abl and may function as an adapter protein in the central nervous system. It is also thought to be involved in apoptotic regulation. SHD contains five YXXP motifs, a substrate sequence preferred by Abl tyrosine kinases, in addition to a poly-proline rich region and a C-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198199 cd09946, SH2_HSH2_like, Src homology 2 domain found in hematopoietic SH2 (HSH2) protein

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 50  MSRAQAEALLSGRPDGTFLIRPSTTG-QYALSIVCSGAPKHCLVYETERG-FGFAEPFNI 107
           +SR  AE +L  +P G+FLIR S +   Y LS     + +H +V   + G F        
Sbjct: 14  ISREAAENMLESQPLGSFLIRVSHSHVGYTLSYKAQSSCRHFMVKLLDDGTFMIPGEKVA 73

Query: 108 YPSLGALVLHYAANSLEEHNDDL 130
           + SL ALV  +    +E   + L
Sbjct: 74  HTSLHALVTFHQQKPIEPRRELL 96

HSH2 is thought to function as an adapter protein involved in tyrosine kinase signaling. It may also be involved in regulating cytokine signaling and cytoskeletal reorganization in hematopoietic cells. HSH2 contains several putative protein-binding motifs, SH3-binding proline-rich regions, and phosphotyrosine sites, but lacks enzymatic motifs. HSH2 was found to interact with cytokine-regulated tyrosine kinase c-FES and an activated Cdc42-associated tyrosine kinase ACK1. HSH2 binds c-FES through both its C-terminal region and its N-terminal region including the SH2 domain and binds ACK1 via its N-terminal proline-rich region. Both kinases bound and tyrosine-phosphorylated HSH2 in mammalian cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
cd00173	94	SH2 Src homology 2 domains; Signal transduction, i	99.92
smart00252	84	SH2 Src homology 2 domains. Src homology 2 domains	99.89
PF00017	77	SH2: SH2 domain; InterPro: IPR000980 The Src homol	99.88
KOG4637|consensus	464		99.87
KOG4637|consensus	464		99.8
KOG4278|consensus	1157		99.78
KOG4226|consensus	379		99.75
KOG1264|consensus	1267		99.75
KOG0790|consensus	600		99.73
KOG2996|consensus	865		99.72
KOG1264|consensus	1267		99.69
KOG0197|consensus	468		99.69
KOG4792|consensus	293		99.68
KOG0194|consensus	474		99.47
KOG1930|consensus	483		99.47
KOG0790|consensus	600		99.44
KOG3601|consensus	222		99.16
KOG3697|consensus	345		98.74
KOG3751|consensus	622		98.42
PF14633	220	SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_	98.26
KOG4566|consensus	258		97.56
KOG1856|consensus	1299		96.77
PF14633	220	SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_	96.67
KOG1856|consensus	1299		95.25
PF02762	86	Cbl_N3: CBL proto-oncogene N-terminus, SH2-like do	87.63

>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr)

Probab=99.92  E-value=4.4e-24  Score=140.14  Aligned_cols=91  Identities=42%  Similarity=0.715  Sum_probs=83.2

Q ss_pred             cccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHHhhC
Q psy8554          45 TWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAAN  121 (148)
Q Consensus        45 ~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y~~~  121 (148)
                      +||| .|+|++||++|++.++|+||||.|  .++.|+||++.+++++|++|....+++++......|+||.|||+||+.+
T Consensus         1 ~w~~g~i~r~~Ae~~L~~~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~f~sl~eLv~~y~~~   80 (94)
T cd00173           1 PWYHGPISREEAEELLKKKPDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDGYYLLGEGRSFPSLPELIEHYQKN   80 (94)
T ss_pred             CccccCCCHHHHHHHHhcCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCCeEEecCCCccCCHHHHHHHHhhC
Confidence            6999 999999999999899999999999  6899999999999999999999988877776457899999999999999


Q ss_pred             CccccCCCccceecccc
Q psy8554         122 SLEEHNDDLKTTLAYPV  138 (148)
Q Consensus       122 ~l~~~~~~l~~~L~~Pv  138 (148)
                      ++   .+++.+.|+.|+
T Consensus        81 ~~---~~~~~~~L~~p~   94 (94)
T cd00173          81 PL---SDGLGVKLRYPV   94 (94)
T ss_pred             cc---CCCcccEeCCcC
Confidence            87   367889999886

SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.

>smart00252 SH2 Src homology 2 domains

Probab=99.89  E-value=1.1e-22  Score=131.25  Aligned_cols=80  Identities=40%  Similarity=0.604  Sum_probs=72.0

Q ss_pred             ccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHHhh
Q psy8554          44 KTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAA  120 (148)
Q Consensus        44 ~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y~~  120 (148)
                      ++||| .|+|++||++|.+.++|+||||.|  .++.|+||++.++.++||+|...++|.|+++....|+||.|||+||+.
T Consensus         1 ~~w~~g~i~r~~Ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~~~~l~~~~~F~sl~eLI~~y~~   80 (84)
T smart00252        1 QPWYHGFISREEAEKLLKNEGDGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDGKFYLDGGRKFPSLVELVEHYQK   80 (84)
T ss_pred             CCeecccCCHHHHHHHHhcCCCcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCCcEEECCCCccCCHHHHHHHHhh
Confidence            47999 999999999998878999999999  489999999999999999999987666666656789999999999998


Q ss_pred             CCc
Q psy8554         121 NSL  123 (148)
Q Consensus       121 ~~l  123 (148)
                      +++
T Consensus        81 ~~~   83 (84)
T smart00252       81 NSL   83 (84)
T ss_pred             CCC
Confidence            863

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.

>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []

Probab=99.88  E-value=2e-22  Score=128.11  Aligned_cols=73  Identities=47%  Similarity=0.737  Sum_probs=68.4

Q ss_pred             ccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHH
Q psy8554          46 WLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY  118 (148)
Q Consensus        46 Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y  118 (148)
                      ||| .|+|++||++|+. .++|+||||.|  .+|.|+||++.+++++|++|.+.+++.++......|+||.+||+||
T Consensus         1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y   77 (77)
T PF00017_consen    1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENGGYFLSDGKKFPSLSDLVEHY   77 (77)
T ss_dssp             TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTSEEESSTSSEBSSHHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecCCceEEccCCCcCCCHHHHHHhC
Confidence            999 9999999999988 89999999999  6899999999999999999999999867776667899999999998

Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....

>KOG4637|consensus

Probab=99.87  E-value=3.1e-22  Score=156.55  Aligned_cols=100  Identities=30%  Similarity=0.569  Sum_probs=93.0

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      +..++||| .|||+++...|++++||+||||+-  .+|.|+|+++.+|..+=++|.+.++.+.|.+. -.|+|+.+||+|
T Consensus        20 L~~a~WYWgdisReev~~~L~d~PDGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgKyGF~d~-ltf~SVVelIn~   98 (464)
T KOG4637|consen   20 LQDAEWYWGDISREEVNKKLRDQPDGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGKYGFSDP-LTFNSVVELINH   98 (464)
T ss_pred             hhhccccccccCHHHHHHHhcCCCCCcEEeeccccCCCceEEEEecCCccceeeeEEecCccCCCCc-hhhHHHHHHHHH
Confidence            47789999 999999999999999999999988  69999999999999999999998877778765 689999999999


Q ss_pred             HhhCCccccCCCccceecccccCC
Q psy8554         118 YAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       118 y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      |+..+|..++..|.++|.+||.+-
T Consensus        99 yr~~SL~~yN~~LDvrLlyPVs~~  122 (464)
T KOG4637|consen   99 YRNESLAQYNPKLDVRLLYPVSRY  122 (464)
T ss_pred             HhhhHHHhhCcccceeeechHHHh
Confidence            999999999999999999999863

>KOG4637|consensus

Probab=99.80  E-value=5.6e-20  Score=144.01  Aligned_cols=117  Identities=59%  Similarity=1.006  Sum_probs=107.6

Q ss_pred             ccccccccCCCCCCccccccc-cCCHHHHHHHhcCCCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCC
Q psy8554          28 LSALNRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPF  105 (148)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~  105 (148)
                      ...+-+.++++|+....-|+. .+.|..||.+|++.++|+||||.| ..|+|+|||..++.|+|+.|..+..|+.|....
T Consensus       316 qy~l~et~~~~ph~~e~~w~~~~a~r~kAe~llrg~~dGtFLIR~ss~~g~yalSV~~~~~V~HClIy~tatG~GFa~py  395 (464)
T KOG4637|consen  316 QYLLCETDENLPHNDEKTWRVRDANRDKAEELLRGKPDGTFLIRESSKGGCYALSVVHDGEVKHCLIYQTATGFGFAEPY  395 (464)
T ss_pred             HHHHhcccccCcchhhhHhHHhhhhHHHHHHHhcCCCCCeEEEeeccCCCceEEEEEECCceeeeEEeeccccccccchh
Confidence            344667778899988889999 999999999999999999999998 999999999999999999999999999998877


Q ss_pred             CCCCCHHHHHHHHhhCCccccCCCccceecccccCCCCC
Q psy8554         106 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG  144 (148)
Q Consensus       106 ~~F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~p~  144 (148)
                      ..+.||.+||.||++++|..+++.+.++|++|+..+.+.
T Consensus       396 n~y~tlk~lV~hY~h~SLe~HnDal~ttLr~Pv~~~~~~  434 (464)
T KOG4637|consen  396 NLYSTLKELVLHYQHTSLEQHNDALTTTLRYPVFAQVTS  434 (464)
T ss_pred             HHHHHHHHHHHHHhhhhHHhhccccccccccceecccCC
Confidence            789999999999999999999999999999999876443

>KOG4278|consensus

Probab=99.78  E-value=4.2e-19  Score=148.07  Aligned_cols=101  Identities=30%  Similarity=0.465  Sum_probs=93.4

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      .++.+.||| .++|..||.+|...-.|+||||+|  .+|.|+||+++.|+|.||+|..+.+|+.|+.....|.+|.|||.
T Consensus       148 SLeKhsWYHGpvSRsaaEy~LsSgInGSFLVRESEsSpgQ~sISlRyeGRVyHYRINt~~dgK~yvt~EsrF~TLaELVH  227 (1157)
T KOG4278|consen  148 SLEKHSWYHGPVSRSAAEYILSSGINGSFLVRESESSPGQYSISLRYEGRVYHYRINTDNDGKMYVTQESRFRTLAELVH  227 (1157)
T ss_pred             chhhcccccCccccchhhhhhhcCcccceEEeeccCCCcceeEEEEecceEEEEEeeccCCccEEEeehhhhhHHHHHHh
Confidence            468889999 999999999999999999999999  99999999999999999999999999888877778999999999


Q ss_pred             HHhhCCccccCCCccceecccccCCCCCC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFAPASGM  145 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~~~p~~  145 (148)
                      ||....     +||.++|.+|.+|.+..+
T Consensus       228 HHStvA-----DGLittLhYPApK~nKpt  251 (1157)
T KOG4278|consen  228 HHSTVA-----DGLITTLHYPAPKKNKPT  251 (1157)
T ss_pred             hccccc-----cceeEeeeccCccCCCCc
Confidence            999987     999999999999755443

>KOG4226|consensus

Probab=99.75  E-value=1.9e-17  Score=125.69  Aligned_cols=98  Identities=26%  Similarity=0.386  Sum_probs=85.8

Q ss_pred             Cccccccc-cCCHHHHHHHh-cCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL-~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      +...+||+ .|+|.+||..| ....+|+||||+|  ++|.|.+|++..++-+||++...++ -|.++. +.|.++.+||+
T Consensus       278 ~ag~~WYyG~itR~qae~~Ln~hG~eGdFLiRDSEsnpgD~SvSlka~grNKHFkVq~~d~-~ycIGq-RkF~tmd~Lv~  355 (379)
T KOG4226|consen  278 FAGRPWYYGNITRHQAECALNEHGHEGDFLIRDSESNPGDFSVSLKASGRNKHFKVQLVDN-VYCIGQ-RKFHTMDELVE  355 (379)
T ss_pred             ccCCcceeccccHHHHHHHHhccCccCceEEecCCCCCcceeEEeeccCCCcceEEEEecc-eEEecc-ceeccHHHHHH
Confidence            47789999 99999999999 5589999999999  9999999999999999999987654 566665 68999999999


Q ss_pred             HHhhCCccccCCCccceecccccC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      ||++.++-.+..|....|..+.++
T Consensus       356 HY~kaPIfts~qgEKLyLvr~Lpk  379 (379)
T KOG4226|consen  356 HYKKAPIFTSEQGEKLYLVRALPK  379 (379)
T ss_pred             hhhcCCceecCCCceEEEeccCCC
Confidence            999999877667888888887754

>KOG1264|consensus

Probab=99.75  E-value=4.2e-18  Score=144.10  Aligned_cols=104  Identities=34%  Similarity=0.544  Sum_probs=91.0

Q ss_pred             Cccccccc-cCC-HHHHHHHhc------CCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCc---eEEecCCCC
Q psy8554          41 HDEKTWLV-RMS-RAQAEALLS------GRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERG---FGFAEPFNI  107 (148)
Q Consensus        41 ~~~~~Wyh-~is-r~~Ae~lL~------~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g---~~~~~~~~~  107 (148)
                      |..+.||| .+. |.+|+++|.      +.++|+||||+|  ..|.|+||+..+|++.|++|+....+   +||...+..
T Consensus       531 H~~E~WFHgkle~R~eAekll~eycke~G~~dGtFlVReS~tFvgDytLSfwr~grv~HcRIrsk~e~gt~Kyyl~dN~v  610 (1267)
T KOG1264|consen  531 HFGEKWFHGKLEGRTEAEKLLQEYCKETGGKDGTFLVRESETFVGDYTLSFWRSGRVQHCRIRSKMEGGTLKYYLTDNLV  610 (1267)
T ss_pred             ccchhhhhcccccchHHHHHHHHHHHHhCCCCccEEEeeccccccceeeeeeECCceeeEEEEeeecCCceeEEEecchh
Confidence            55678999 998 999999994      357999999999  99999999999999999999875433   566666689


Q ss_pred             CCCHHHHHHHHhhCCccccCCCccceecccccCCCCCCc
Q psy8554         108 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMT  146 (148)
Q Consensus       108 F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~p~~~  146 (148)
                      |+||-+||.||+++.|-+  ....++|+.||++++||..
T Consensus       611 fdslY~LI~~Y~~~~Lr~--aeF~m~LtePvPqp~~He~  647 (1267)
T KOG1264|consen  611 FDSLYALIQHYRETHLRC--AEFEMRLTEPVPQPNPHES  647 (1267)
T ss_pred             HHHHHHHHHHHHhccccc--cceEEEecCCCCCCCcccC
Confidence            999999999999999987  6688999999999999853

>KOG0790|consensus

Probab=99.73  E-value=1.3e-17  Score=133.77  Aligned_cols=97  Identities=29%  Similarity=0.391  Sum_probs=84.8

Q ss_pred             ccccccc-cCCHHHHHHHh-cCCCCceEEEEeC--CCCCEEEEEEeCC---------eeEEEEEEEeCCceEEecCCCCC
Q psy8554          42 DEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPS--TTGQYALSIVCSG---------APKHCLVYETERGFGFAEPFNIY  108 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL-~~~~~G~FLvR~s--~~~~~~Lsv~~~~---------~v~H~~I~~~~~g~~~~~~~~~F  108 (148)
                      .++.||| .++..+||.|| .....|+||||+|  .+|.|+||++.++         +|.|..|...+ |.|-+++...|
T Consensus       108 tserWfHG~LsgkeAekLl~ekgk~gsfLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~-~kydVGgge~F  186 (600)
T KOG0790|consen  108 TSERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQE-GKYDVGGGERF  186 (600)
T ss_pred             hhhhhhccCCCchhHHHHHHhcCCCccEEEeccccCCCceEEEEEcCCcccCCCCccceEEEEEEecc-cccccCCcccc
Confidence            3457999 99999999999 4579999999999  9999999999865         89999998864 67777888899


Q ss_pred             CCHHHHHHHHhhCCccccCCCccceecccccC
Q psy8554         109 PSLGALVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       109 ~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      +|+.+||+||+++++.+ ..|..+.|++|+..
T Consensus       187 ~sltdLidhykknpmvE-t~gtvv~LrqP~na  217 (600)
T KOG0790|consen  187 DSLTDLVEHYKKNPMVE-TLGTVVYLRQPLNA  217 (600)
T ss_pred             chHHHHHHHhccCchhh-hcceeEEeeccccc
Confidence            99999999999999876 36677899999863

>KOG2996|consensus

Probab=99.72  E-value=9e-18  Score=138.10  Aligned_cols=98  Identities=35%  Similarity=0.464  Sum_probs=90.6

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      ++.++||. .|.|.+||..|+++++|+||||.+  ..+.|++|+++++.++|++|... +|++.+...+.|+|+.|||+|
T Consensus       682 ~s~~~WyaG~MERaqaes~Lk~~~ngT~LVR~r~kea~e~AISikynnevKHikI~~~-dg~~~i~E~k~F~sl~ELVey  760 (865)
T KOG2996|consen  682 YSEFPWYAGEMERAQAESTLKNRPNGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETN-DGKVHITEDKKFNSLVELVEY  760 (865)
T ss_pred             hhhhhhhcchHhhhhhhhHhhcCCCceEEEEecccchhheeEEEEeccccceEEEEec-CCeEEechhhhhhhHHHHHHH
Confidence            46679999 999999999999999999999999  88899999999999999999987 677777777899999999999


Q ss_pred             HhhCCccccCCCccceeccccc
Q psy8554         118 YAANSLEEHNDDLKTTLAYPVF  139 (148)
Q Consensus       118 y~~~~l~~~~~~l~~~L~~Pv~  139 (148)
                      |+.++|...-..|.+.|++|..
T Consensus       761 Yq~~sLke~Fk~LDTtLk~Pyk  782 (865)
T KOG2996|consen  761 YQSHSLKEIFKALDTTLKFPYK  782 (865)
T ss_pred             HHhccHHHHHHHhhhhhcCCCc
Confidence            9999998877889999999997

>KOG1264|consensus

Probab=99.69  E-value=4.7e-17  Score=137.83  Aligned_cols=94  Identities=36%  Similarity=0.565  Sum_probs=80.3

Q ss_pred             CCccccccc-cCCHHHHHHHhcC-CCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      .|++++||| .++|++||++|.. ..||+||||.+ ..+.|+||++.+|+++|++|.++  |..|+-+...|.||.+||+
T Consensus       644 ~He~k~W~~as~treqAE~mL~rvp~DGaFLiR~~~~~nsy~iSfr~~gkikHcRi~rd--Gr~fvl~t~~FesLv~lv~  721 (1267)
T KOG1264|consen  644 PHESKPWYHASLTREQAEDMLMRVPRDGAFLIRKREGSNSYAISFRARGKIKHCRINRD--GRHFVLGTSAFESLVELVS  721 (1267)
T ss_pred             cccCCccccccccHHHHHHHHhhCccCcceEEEeccCCceEEEEEEEcCcEeEEEEccC--ceEEEeccHHHHHHHHHHH
Confidence            367889999 9999999999954 78899999977 89999999999999999999874  5444433467999999999


Q ss_pred             HHhhCCccccCCCccceecccccC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      ||.+++|..     .++|++||..
T Consensus       722 yY~k~~lyR-----~mkLr~PVne  740 (1267)
T KOG1264|consen  722 YYEKHPLYR-----KMKLRYPVNE  740 (1267)
T ss_pred             HHhcChhhh-----cccccCcCCH
Confidence            999999764     5789999853

>KOG0197|consensus

Probab=99.69  E-value=6.1e-17  Score=131.95  Aligned_cols=96  Identities=30%  Similarity=0.494  Sum_probs=85.7

Q ss_pred             CCccccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeCC------eeEEEEEEEeCCceEE--ecCCC
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCSG------APKHCLVYETERGFGF--AEPFN  106 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~~------~v~H~~I~~~~~g~~~--~~~~~  106 (148)
                      .++.++||+ .|+|++||+.|..  +..|+||||+|  .+|.|+||++...      .++||+|...++|.++  +....
T Consensus        77 ~l~~~~Wf~~~isR~~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~~~~~~~~~~~~~  156 (468)
T KOG0197|consen   77 KLSDEPWFFGKISREEAERQLLAPENKEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLDGGGLYPYIDERE  156 (468)
T ss_pred             ccccCCchhccccHHHHHHhhcCCCCCccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcCCCCeecCCCHHH
Confidence            467789999 9999999977754  56699999999  9999999999865      8999999999888666  77678


Q ss_pred             CCCCHHHHHHHHhhCCccccCCCccceecccccC
Q psy8554         107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       107 ~F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      .|+++.+||+||+.++     +|++.+|..||.+
T Consensus       157 ~F~~l~~lv~~~~~~~-----~gl~~~l~~p~~~  185 (468)
T KOG0197|consen  157 LFSSLQQLVNYYSKNA-----DGLCTRLRDPCSK  185 (468)
T ss_pred             hhhhHHHHHhhhhccC-----cchhhcccCchhc
Confidence            9999999999999997     9999999999987

>KOG4792|consensus

Probab=99.68  E-value=1.7e-16  Score=117.74  Aligned_cols=96  Identities=30%  Similarity=0.450  Sum_probs=80.0

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCc-------eEEecCCCCCCC
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERG-------FGFAEPFNIYPS  110 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g-------~~~~~~~~~F~s  110 (148)
                      .+...||+ .|||+||..+|.+.+.|.||||+|  .+|.|+|||+.+.+|.||.|......       .+-++. +.|++
T Consensus         8 ~er~swYfg~mSRqeA~~lL~~~r~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rIgd-Q~Fd~   86 (293)
T KOG4792|consen    8 SERSSWYFGPMSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRIGD-QEFDS   86 (293)
T ss_pred             hhccceecCcccHHHHHHHhcCcceeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeeecc-ccccc
Confidence            35568999 999999999999988999999999  69999999999999999999872211       344554 88999


Q ss_pred             HHHHHHHHhhCCccccCCCccceecccccCCCC
Q psy8554         111 LGALVLHYAANSLEEHNDDLKTTLAYPVFAPAS  143 (148)
Q Consensus       111 l~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~p  143 (148)
                      |+.|++||+-+-|..      +.|..|.+|..-
T Consensus        87 lPaLL~fykihyLdt------ttLi~p~~r~~~  113 (293)
T KOG4792|consen   87 LPALLEFYKIHYLDT------TTLIEPAKRSRQ  113 (293)
T ss_pred             hHHHHhheeEeeecc------cccccccccccc
Confidence            999999999887643      678888877543

>KOG0194|consensus

Probab=99.47  E-value=3.7e-13  Score=110.80  Aligned_cols=96  Identities=29%  Similarity=0.401  Sum_probs=78.4

Q ss_pred             ccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCC---CE-EEEEEeC--CeeEEEEEEEeCCceEEecCCCCCCCHH
Q psy8554          42 DEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTG---QY-ALSIVCS--GAPKHCLVYETERGFGFAEPFNIYPSLG  112 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~---~~-~Lsv~~~--~~v~H~~I~~~~~g~~~~~~~~~F~sl~  112 (148)
                      ..++||| .+.|++|+.+|.  .+|+||||.+  ..|   .+ +||+...  ..++||.|.+.+++ ++......|+|+.
T Consensus        47 ~~~~~yHG~l~red~~~lL~--~~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~~~-~~~~~~~~F~si~  123 (474)
T KOG0194|consen   47 RELPYYHGLLPREDAEKLLK--NDGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNGNL-FFFEGLRKFPTIS  123 (474)
T ss_pred             hcCccccccccHhHHHHHhC--CCCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcCCe-eEEeccccCCcHH
Confidence            4469999 999999999999  6999999999  333   24 8999885  78899999998774 4444457899999


Q ss_pred             HHHHHHhhCCccccCCCccceecccccCCC
Q psy8554         113 ALVLHYAANSLEEHNDDLKTTLAYPVFAPA  142 (148)
Q Consensus       113 eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~  142 (148)
                      +||.||+.+.+.+  .+....|+.|+.++.
T Consensus       124 ~li~~~~~~~~~~--~~~~~~L~~PI~r~~  151 (474)
T KOG0194|consen  124 ELVNYYKFSKLEI--TGKNFFLKRPIPRQK  151 (474)
T ss_pred             HHHHHHHhcccce--eccceeecccccccc
Confidence            9999999999887  334558999998753

>KOG1930|consensus

Probab=99.47  E-value=7.3e-14  Score=111.29  Aligned_cols=97  Identities=31%  Similarity=0.473  Sum_probs=80.5

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeC---------------CeeEEEEEEEeCCceEE
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCS---------------GAPKHCLVYETERGFGF  101 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~---------------~~v~H~~I~~~~~g~~~  101 (148)
                      ...++-||. +|+|++|..||+++++|+||||+|  .+|.|-|.++..               ..|+||.|+....|-.+
T Consensus       208 ~DTSKyWYKP~isREQAIalLrdkePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spkGVkL  287 (483)
T KOG1930|consen  208 KDTSKYWYKPNISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPKGVKL  287 (483)
T ss_pred             ecccccccCCCCCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCCceec
Confidence            456778999 999999999999999999999999  999999999851               35999999998888555


Q ss_pred             e--cCCCCCCCHHHHHHHHhhCCccccCCCccceecccccCC
Q psy8554         102 A--EPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       102 ~--~~~~~F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      .  .....|.||..||-.|.-.+     -.|+|.|..|=..+
T Consensus       288 KGC~nEP~FGSLSALV~QHSIt~-----LALPckL~iP~rDp  324 (483)
T KOG1930|consen  288 KGCDNEPVFGSLSALVYQHSITA-----LALPCKLVIPDRDP  324 (483)
T ss_pred             cCCCCCCccchhHHHHhhccchh-----hhcceeEeccCCCc
Confidence            3  23478999999998887776     44788888876543

>KOG0790|consensus

Probab=99.44  E-value=2.6e-13  Score=109.32  Aligned_cols=102  Identities=24%  Similarity=0.334  Sum_probs=85.8

Q ss_pred             cccccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHH
Q psy8554          43 EKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY  118 (148)
Q Consensus        43 ~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y  118 (148)
                      +..||| .|+..+||.||+. ..+|+||.|.|  ++|.|+|+++.++.+.|++|....+. |-+-++..|.++.|||+||
T Consensus         3 s~~wfh~~~~g~~ae~Ll~~~g~dgsfl~r~s~sNp~~fsl~~r~~~~v~hikiq~~~~~-~~l~~gekfat~~ELvqyy   81 (600)
T KOG0790|consen    3 SRRWFHPDLSGVEAETLLKERGVDGSFLARPSESNPGDFSLSVRRGDKVTHIKIQNSGDF-YDLYGGEKFATLAELVQYY   81 (600)
T ss_pred             chhhcCCCccchhHHHHHHHhccccchhhccccCCCcceeEEEEeCCceEEEEEeecCcc-ccccCCccccchHHHHHHH
Confidence            457999 9999999999976 79999999999  99999999999999999999875443 3344447899999999999


Q ss_pred             hhCC-ccccCCCccceecccccCCCCCC
Q psy8554         119 AANS-LEEHNDDLKTTLAYPVFAPASGM  145 (148)
Q Consensus       119 ~~~~-l~~~~~~l~~~L~~Pv~~~~p~~  145 (148)
                      +.+. -...+.|..+.|++|+....|..
T Consensus        82 me~~~~lkekng~~ielK~pl~cAdpts  109 (600)
T KOG0790|consen   82 MEHHGQLKEKNGDVIELKYPLNCADPTS  109 (600)
T ss_pred             HhhhHHHHhcCCCEEEecCCCccCCchh
Confidence            9886 22336888999999998877754

>KOG3601|consensus

Probab=99.16  E-value=2.9e-12  Score=94.26  Aligned_cols=83  Identities=30%  Similarity=0.386  Sum_probs=76.0

Q ss_pred             ccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHH
Q psy8554          42 DEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY  118 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y  118 (148)
                      ...+||+ .|+|..||++|....+|+||+|.+  .+|.|.++++....|.|+++.+...|+++... ..|+|+.+|++||
T Consensus        56 ~~~~wve~~i~r~~ae~~l~~~~~G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~-skfnslnplv~Y~  134 (222)
T KOG3601|consen   56 KPHEWVEGLIPRPLAEDLLSKKRDGDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWS-SKFNSLNPLVSYH  134 (222)
T ss_pred             ccccceecccccchhhhhhhccCcchhhhhhhhcCcccccccccCCCCceeccccccCccccccch-hhccCCCCCcccC
Confidence            3568999 999999999998899999999999  99999999999999999999998889898875 5799999999999


Q ss_pred             hhCCccc
Q psy8554         119 AANSLEE  125 (148)
Q Consensus       119 ~~~~l~~  125 (148)
                      +.++...
T Consensus       135 rt~s~~r  141 (222)
T KOG3601|consen  135 RTASQSR  141 (222)
T ss_pred             ccccccc
Confidence            9987654

>KOG3697|consensus

Probab=98.74  E-value=1.6e-08  Score=77.80  Aligned_cols=96  Identities=23%  Similarity=0.207  Sum_probs=80.1

Q ss_pred             ccccccc-cCCHHHHHHHhcCCCCceEEEEeC------------------------------------------------
Q psy8554          42 DEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS------------------------------------------------   72 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s------------------------------------------------   72 (148)
                      ...+||+ .++++.++..|.  .+|.|++|.+                                                
T Consensus       199 ~k~pp~~g~l~~~~~q~~l~--~~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~~~~  276 (345)
T KOG3697|consen  199 SKMPPPGGFLDTRLKQRPLA--PDAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLFDET  276 (345)
T ss_pred             ccCCCCCCccchhhhhccCC--cccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhcccc
Confidence            4568999 999999999998  7788887743                                                


Q ss_pred             -CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHHhhCCccccCCCccceecccccCC
Q psy8554          73 -TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus        73 -~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                       .+|.|+|+-..++..+|..+. +.+|..- ..++.|+|+..||+||..+.|++.+.|...-|++||.++
T Consensus       277 ~~~gqyvltgl~~~~~khlllv-dpegvvr-tkd~~fdsishli~yh~~~~lpiis~~sel~l~~pv~r~  344 (345)
T KOG3697|consen  277 TTPGQYVLTGLQSGQPKHLLLV-DPEGVVR-TKDRRFDSISHLINYHMDNHLPIISAGSELCLQQPVERK  344 (345)
T ss_pred             CCCccEEEecccCCCcceEEEE-CCcccee-cccchhhHHHHHHHHhhhccCceecCcchhhhhCccccc
Confidence             467888988888999998775 3455333 344789999999999999999999999999999999875

>KOG3751|consensus

Probab=98.42  E-value=9.2e-08  Score=78.84  Aligned_cols=97  Identities=27%  Similarity=0.371  Sum_probs=79.0

Q ss_pred             CCCccccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCC-c-eEEe--cCCCCCC
Q psy8554          39 PHHDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETER-G-FGFA--EPFNIYP  109 (148)
Q Consensus        39 ~~~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~-g-~~~~--~~~~~F~  109 (148)
                      ..+..+.||| .|+|+++.++++.  -.+|-||+|+|  ++..|++++....+++||+|.-.+. | .++.  .+...|.
T Consensus       514 ~~h~sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~~~~~~t~~~g~t~~s  593 (622)
T KOG3751|consen  514 AIHRSQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDDGCTFFTLDDGPTKFS  593 (622)
T ss_pred             hhcccccCcccccCchhhhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCCCceeeccCCCCcccc
Confidence            4467789999 9999999998854  58899999999  8888999999999999999986443 3 2332  2236799


Q ss_pred             CHHHHHHHHhhCCccccCCCccceecccccC
Q psy8554         110 SLGALVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       110 sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      ++..|+++|+-++     .-+.|.|+..|.+
T Consensus       594 d~~ql~~~~ql~k-----~~l~~al~~~~~r  619 (622)
T KOG3751|consen  594 DLIQLVEFYQLNK-----GVLPCALKHCCER  619 (622)
T ss_pred             ccccccchhhcCC-----CcchHHHHHHHHh
Confidence            9999999999885     6788888887754

>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A

Probab=98.26  E-value=8.7e-06  Score=61.32  Aligned_cols=76  Identities=21%  Similarity=0.281  Sum_probs=54.9

Q ss_pred             ccccccCCHHHHHHHhcCCCCceEEEEeCC--CCCEEEEEEe-CCeeEEEEEEEeCC------c-eEEecCCCCCCCHHH
Q psy8554          44 KTWLVRMSRAQAEALLSGRPDGTFLIRPST--TGQYALSIVC-SGAPKHCLVYETER------G-FGFAEPFNIYPSLGA  113 (148)
Q Consensus        44 ~~Wyh~isr~~Ae~lL~~~~~G~FLvR~s~--~~~~~Lsv~~-~~~v~H~~I~~~~~------g-~~~~~~~~~F~sl~e  113 (148)
                      +|-|++++-.+|++.|.+...|.++||+|.  ....+++++. +|...|+.|...+.      | ...++ +..|.+|.|
T Consensus        38 HP~F~n~~~~qAe~~L~~~~~Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~~L~i~-~~~yeDLDE  116 (220)
T PF14633_consen   38 HPLFKNFNYKQAEEYLADQDVGEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEFSLGKTLKIG-GEEYEDLDE  116 (220)
T ss_dssp             STTEESS-HHHHHHHHCCS-TT-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTTS-SSEEEET-TEEESSHHH
T ss_pred             CCCccCCCHHHHHHHHhcCCCCCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCccccCcEEEEC-CeEECCHHH
Confidence            356669999999999998889999999993  3457888886 46677998876432      2 23455 478999999


Q ss_pred             HHHHHhh
Q psy8554         114 LVLHYAA  120 (148)
Q Consensus       114 LI~~y~~  120 (148)
                      ||.-|-.
T Consensus       117 ii~r~V~  123 (220)
T PF14633_consen  117 IIARHVE  123 (220)
T ss_dssp             HHHHCHH
T ss_pred             HHHHHHH
Confidence            9998844

>KOG4566|consensus

Probab=97.56  E-value=0.00031  Score=54.11  Aligned_cols=83  Identities=20%  Similarity=0.268  Sum_probs=64.7

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEe-----cC--CCCCC
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFA-----EP--FNIYP  109 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~-----~~--~~~F~  109 (148)
                      .+.+..||| .+++.+|+..|...+.|+|+||++  .+-.+.|+++...+.+..+|.+.++. +..     ..  -..|+
T Consensus        48 ~~~~~g~~w~~~~~~~~~~~l~~~p~~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~~s-fr~ds~~~~~~pl~~~e  126 (258)
T KOG4566|consen   48 LLDSSGHYWGLETANEAELCLGQEPRGTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQDSS-FRLDSSHRHTPPLISFE  126 (258)
T ss_pred             ccccCCcccccccchhHHHhhcCCCccceeeecCcCccccceeEeeeccCCCCccccccccc-eecccccccCCCcccCh
Confidence            355568999 999999999998789999999999  66667999998888888888765532 222     11  24799


Q ss_pred             CHHHHHHHHhhCCc
Q psy8554         110 SLGALVLHYAANSL  123 (148)
Q Consensus       110 sl~eLI~~y~~~~l  123 (148)
                      ++..+|.||+...+
T Consensus       127 ~~~~~~~~y~~~~~  140 (258)
T KOG4566|consen  127 DVEVLIHHYRQSRK  140 (258)
T ss_pred             hHHHHHHhhhhhhh
Confidence            99999999966553

>KOG1856|consensus

Probab=96.77  E-value=0.0028  Score=57.18  Aligned_cols=79  Identities=25%  Similarity=0.329  Sum_probs=58.2

Q ss_pred             cccccccCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeC-CeeEEEEEEEeCC------ceEEecCCCCCCCHHH
Q psy8554          43 EKTWLVRMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCS-GAPKHCLVYETER------GFGFAEPFNIYPSLGA  113 (148)
Q Consensus        43 ~~~Wyh~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~-~~v~H~~I~~~~~------g~~~~~~~~~F~sl~e  113 (148)
                      .+|.||+++-++|+.+|.....|.++||+|  .....+++++.. +...|+.|...+.      |..+.-++..|..|.|
T Consensus      1107 ~HP~F~n~n~eQAe~yL~~~d~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~~l~i~~e~feDLDE 1186 (1299)
T KOG1856|consen 1107 AHPLFKNLNAEQAEAYLSDMDQGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSLGKTLWIGGEEFEDLDE 1186 (1299)
T ss_pred             cCccccCCCHHHHHHHHHhcccccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccccceEEECCcccccHHH
Confidence            357888999999999999999999999999  555567777764 5567777754221      2222223478999999


Q ss_pred             HHHHHhhC
Q psy8554         114 LVLHYAAN  121 (148)
Q Consensus       114 LI~~y~~~  121 (148)
                      +|.-|-..
T Consensus      1187 iI~r~vqp 1194 (1299)
T KOG1856|consen 1187 IIARYVQP 1194 (1299)
T ss_pred             HHHHHHHH
Confidence            99888553

>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A

Probab=96.67  E-value=0.0033  Score=47.48  Aligned_cols=76  Identities=22%  Similarity=0.337  Sum_probs=53.1

Q ss_pred             ccccccCCHHHHHHHhcC-----CCCceEEEEeC--CCCCEEEEEEeCCeeEEEE--EEEeCCceEEecCCCCCCCHHHH
Q psy8554          44 KTWLVRMSRAQAEALLSG-----RPDGTFLIRPS--TTGQYALSIVCSGAPKHCL--VYETERGFGFAEPFNIYPSLGAL  114 (148)
Q Consensus        44 ~~Wyh~isr~~Ae~lL~~-----~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~--I~~~~~g~~~~~~~~~F~sl~eL  114 (148)
                      ...|..-+++++|++|..     ..--.|.+..+  .+|.|.|+...+...+|..  |....+|++|-+  ..|+++.+|
T Consensus       135 h~kf~~g~~~e~e~~L~~~k~~nP~~i~Y~f~~~~~~PG~F~L~y~~~~~~~~~~~~v~V~p~Gf~~r~--~~f~~~~~L  212 (220)
T PF14633_consen  135 HRKFKDGTKEEVEEWLKEEKKANPKRIPYAFCISKEHPGYFILSYKPNKNPRHEYWPVKVTPDGFRFRK--QVFPSLDRL  212 (220)
T ss_dssp             STTEESS-CCCCHHHHHCHHHHSTTS-EEEEEE-TTSTTEEEEEEESSTTS-EEEEEEEE-SSSEEETT--EEESSHHHH
T ss_pred             CccccCCCHHHHHHHHHHHHHhCCCCceEEEEECCCCCCEEEEEEEcCCCCceEEeeEEEecCcEEEec--ccCCCHHHH
Confidence            344545567788888853     23345666766  9999999999876666555  877888987754  589999999


Q ss_pred             HHHHhhC
Q psy8554         115 VLHYAAN  121 (148)
Q Consensus       115 I~~y~~~  121 (148)
                      +.+++.+
T Consensus       213 ~~~FK~~  219 (220)
T PF14633_consen  213 INWFKKH  219 (220)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhc
Confidence            9999864

>KOG1856|consensus

Probab=95.25  E-value=0.06  Score=48.99  Aligned_cols=77  Identities=21%  Similarity=0.330  Sum_probs=61.4

Q ss_pred             ccccccCCHHHHHHHhcC--CCCceEE---EEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          44 KTWLVRMSRAQAEALLSG--RPDGTFL---IRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        44 ~~Wyh~isr~~Ae~lL~~--~~~G~FL---vR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      +.+|..=++++.|++|+.  +.++.+.   +.-|  .+|.|.|+.+.++.++|--|.....|++|.+  +.|+|+.+|..
T Consensus      1205 hkyf~~Gt~~~~ek~L~~~k~~np~~~~Y~F~~s~~~PG~F~L~y~~~~k~~heyv~v~p~g~~~rg--~~f~tld~L~~ 1282 (1299)
T KOG1856|consen 1205 HKYFFTGTKKEVEKLLRDYKKVNPKKSVYFFCASHEHPGKFCLSYKPSSKPRHEYVKVVPEGFRFRG--QNFGTLDELCR 1282 (1299)
T ss_pred             hhHhhcCCHHHHHHHHHHHhccCCCeeeEEEEecccCCceEEEEeccCCCccceeEEEcccceEEec--ccchhHHHHHH
Confidence            345554458889999963  3444444   4556  9999999999999999999988999988876  47999999999


Q ss_pred             HHhhCC
Q psy8554         117 HYAANS  122 (148)
Q Consensus       117 ~y~~~~  122 (148)
                      +++.+-
T Consensus      1283 ~FK~h~ 1288 (1299)
T KOG1856|consen 1283 WFKRHY 1288 (1299)
T ss_pred             HHHHHh
Confidence            999875

>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface

Probab=87.63  E-value=2.4  Score=26.75  Aligned_cols=40  Identities=23%  Similarity=0.356  Sum_probs=31.6

Q ss_pred             cccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeC
Q psy8554          45 TWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCS   84 (148)
Q Consensus        45 ~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~   84 (148)
                      +-|. .|+=+|+...|+.  ..+|+|+.|-|  +-|.+++-....
T Consensus         3 pgY~AFlTYdevk~~L~~~~~kpGsYiFRlSCTrLGQWAIGyV~~   47 (86)
T PF02762_consen    3 PGYMAFLTYDEVKARLQHYRDKPGSYIFRLSCTRLGQWAIGYVTQ   47 (86)
T ss_dssp             TTBETT--HHHHHHHHGGGTTSTTEEEEEEESSSTTSEEEEEEET
T ss_pred             CceeEEEeHHHHHHHHHHHhCCcccEEEeeccccccceeEEEEcC
Confidence            5577 8899999999964  68899999999  899998876554

The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	148
2y3a_B	302	Crystal Structure Of P110beta In Complex With Icsh2		2e-32
1qad_A	111	Crystal Structure Of The C-Terminal Sh2 Domain Of T		6e-31
1bfi_A	112	Solution Structure Of The C-Terminal Sh2 Domain Of		6e-31
1h9o_A	112	Phosphatidylinositol 3-Kinase, P85-Alpha Subunit: C		7e-30
3hhm_B	373	Crystal Structure Of P110alpha H1047r Mutant In Com		3e-21
2dlz_A	118	Solution Structure Of The Sh2 Domain Of Human Prote		3e-09
1fu5_A	111	Nmr Structure Of The N-Sh2 Domain Of The P85 Subuni		8e-09
2iug_A	120	Crystal Structure Of The Pi3-Kinase P85 N-Terminal		1e-08
2rd0_B	279	Structure Of A Human P110alpha/p85alpha Complex Len		1e-08
2pna_A	104	Structure Of An Sh2 Domain Of The P85 Alpha Subunit		2e-08
1oo3_A	111	P395s Mutant Of The P85 Regulatory Subunit Of The N		5e-08
2lnw_A	122	Identification And Structural Basis For A Novel Int		9e-08
2lct_A	107	Solution Structure Of The Vav1 Sh2 Domain Complexed		1e-07
2crh_A	138	Solution Structure Of The Sh2 Domain Of Human Proto		2e-07
2eob_A	124	Solution Structure Of The Second Sh2 Domain From Ra		6e-06
1mil_A	104	Transforming Protein Length = 104		2e-05
1tce_A	107	Solution Nmr Structure Of The Shc Sh2 Domain Comple		5e-05
1r1p_A	100	Structural Basis For Differential Recognition Of Ty		6e-05
2fci_A	105	Structural Basis For The Requirement Of Two Phospho		8e-05
3gqi_B	226	Crystal Structure Of Activated Receptor Tyrosine Ki		1e-04
4ey0_A	246	Structure Of Tandem Sh2 Domains From Plcgamma1 Leng		2e-04
4fbn_A	246	Insights Into Structural Integration Of The Plcgamm		2e-04
2ecd_A	119	Solution Structure Of The Human Abl2 Sh2 Domain Len		3e-04
1ab2_A	109	Three-Dimensional Solution Structure Of The Src Hom		3e-04

>pdb|2Y3A|B Chain B, Crystal Structure Of P110beta In Complex With Icsh2 Of P85beta And The Drug Gdc-0941 Length = 302

Iteration: 1
 Score =  134 bits (337), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 82/117 (70%), Gaps = 2/117 (1%)
Query: 30  ALNRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAP 87
           +L   E  LPHH+E+TW V +++R QAE +LSG+ DGTFLIR S+  G YA S+V  G  
Sbjct: 180 SLMEDEDALPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRESSQRGCYACSVVVDGDT 239
Query: 88  KHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG 144
           KHC++Y T  GFGFAEP+N+Y SL  LVLHY   SL +HND L  TLA+PV AP  G
Sbjct: 240 KHCVIYRTATGFGFAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRAPGPG 296

>pdb|1QAD|A Chain A, Crystal Structure Of The C-Terminal Sh2 Domain Of The P85 Alpha Regulatory Subunit Of Phosphoinositide 3-Kinase: An Sh2 Domain Mimicking Its Own Substrate Length = 111

Iteration: 1
 Score =  129 bits (324), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Query: 37  DLPHHDEKTWLVRMS-RAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYE 94
           DLPHHDEKTW V  S R +AE LL G+ DGTFL+R S+  G YA S+V  G  KHC++ +
Sbjct: 2   DLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINK 61
Query: 95  TERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
           T  G+GFAEP+N+Y SL  LVLHY   SL +HND L  TLAYPV+A
Sbjct: 62  TATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 107

>pdb|1BFI|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The P85alpha Regulatory Subunit Of Phosphoinositide 3-Kinase, Nmr, 30 Structures Length = 112

Iteration: 1
 Score =  129 bits (324), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Query: 37  DLPHHDEKTWLVRMS-RAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYE 94
           DLPHHDEKTW V  S R +AE LL G+ DGTFL+R S+  G YA S+V  G  KHC++ +
Sbjct: 3   DLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINK 62
Query: 95  TERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
           T  G+GFAEP+N+Y SL  LVLHY   SL +HND L  TLAYPV+A
Sbjct: 63  TATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 108

>pdb|1H9O|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit: C-Terminal Sh2 Domain Complexed With A Tyr751 Phosphopeptide From The Pdgf Receptor, Crystal Structure At 1.79 A Length = 112

Iteration: 1
 Score =  125 bits (315), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 75/105 (71%), Gaps = 2/105 (1%)
Query: 38  LPHHDEKTWLVRMS-RAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYET 95
           +PHHDEKTW V  S R +AE LL G+ DGTFL+R S+  G YA S+V  G  KHC++ +T
Sbjct: 4   IPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKT 63
Query: 96  ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
             G+GFAEP+N+Y SL  LVLHY   SL +HND L  TLAYPV+A
Sbjct: 64  ATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 108

>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex With Nish2 Of P85alpha And The Drug Wortmannin Length = 373

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Query: 30  ALNRTERDLPHHDEKTWLVRMS-RAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAP 87
           +L   + DLPHHDEKTW V  S R +AE LL G+ DGTFL+R S+  G YA S+V  G  
Sbjct: 287 SLVEDDEDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEV 346
Query: 88  KHCLVYETERGFGFAEPFNIYPSLGAL 114
           KHC++ +T  G+GFAEP+N+Y SL  L
Sbjct: 347 KHCVINKTATGYGFAEPYNLYSSLKEL 373

>pdb|2DLZ|A Chain A, Solution Structure Of The Sh2 Domain Of Human Protein Vav-2 Length = 118

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 50  MSRAQAEALLSGRPDGTFLIR--PSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 107
           M R Q + LL     GT+LIR  P+   ++A+SI  +   KH  V E +      E    
Sbjct: 23  MERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEA-KK 81
Query: 108 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG 144
           + SL  LV +Y  +SL+E    L TTL YP   P+SG
Sbjct: 82  FDSLLELVEYYQCHSLKESFKQLDTTLKYPYSGPSSG 118

>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide Derived From Polyomavirus Middle T Antigen Length = 111

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 50  MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
           +SR +    L    DGTFL+R ++T   G Y L++   G  K   ++  +  +GF++P  
Sbjct: 18  ISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKYGFSDPL- 76
Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + S+  L+ HY   SL ++N  L   L YPV
Sbjct: 77  TFNSVVELINHYRNESLAQYNPKLDVKLLYPV 108

>pdb|2IUG|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2 Domain Length = 120

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 50  MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
           +SR +    L    DGTFL+R ++T   G Y L++   G  K   ++  +  +GF++P  
Sbjct: 18  ISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL- 76
Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + S+  L+ HY   SL ++N  L   L YPV
Sbjct: 77  TFSSVVELINHYRNESLAQYNPKLDVKLLYPV 108

>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex Length = 279

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 50  MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
           +SR +    L    DGTFL+R ++T   G Y L++   G  K   ++  +  +GF++P  
Sbjct: 17  ISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL- 75
Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMTV 147
            + S+  L+ HY   SL ++N  L   L YPV        V
Sbjct: 76  TFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVV 116

>pdb|2PNA|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of Phosphatidylinositol-3-Oh Kinase Length = 104

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 50  MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
           +SR +    L    DGTFL+R ++T   G Y L++   G  K   ++  +  +GF++P  
Sbjct: 11  ISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL- 69
Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + S+  L+ HY   SL ++N  L   L YPV
Sbjct: 70  TFNSVVELINHYRNESLAQYNPKLDVKLLYPV 101

>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N- Terminal Src Homology 2 Domain Of Pi3-Kinase Length = 111

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 50  MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
           +SR +    L    DGTFL+R ++T   G Y L++   G  K   ++  +  +GF++   
Sbjct: 18  ISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKYGFSDSL- 76
Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + S+  L+ HY   SL ++N  L   L YPV
Sbjct: 77  TFNSVVELINHYRNESLAQYNPKLDVKLLYPV 108

>pdb|2LNW|A Chain A, Identification And Structural Basis For A Novel Interaction Between Vav2 And Arap3 Length = 122

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 50  MSRAQAEALLSGRPDGTFLIR--PSTTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 107
           M R Q + LL     GT+LIR  P+   ++A+SI  +   KH  V E +      E    
Sbjct: 29  MERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEA-KK 87
Query: 108 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
           + SL  LV +Y  +SL+E    L TTL YP
Sbjct: 88  FDSLLELVEYYQCHSLKESFKQLDTTLKYP 117

>pdb|2LCT|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A Syk-Derived Doubly Phosphorylated Peptide Length = 107

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 50  MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 107
           M RA AE++L+ R DGTFL+R       ++A+SI  +   KH  +   E  +   E    
Sbjct: 16  MERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEK-KA 74
Query: 108 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
           +  L  LV  Y  NSL++    L TTL +P
Sbjct: 75  FRGLTELVEFYQQNSLKDCFKSLDTTLQFP 104

>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto- Oncogene Protein Vav1 Length = 138

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 50  MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 107
           M RA AE++L+ R DGTFL+R       ++A+SI  +   KH  +   E  +   E    
Sbjct: 33  MERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEK-KA 91
Query: 108 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
           +  L  LV  Y  NSL++    L TTL +P   P
Sbjct: 92  FRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKEP 125

>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc Gamma-2 Length = 124

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 41  HDEKTWLV-RMSRAQAEALLSGRP-DGTFLIRPST-TGQYALSIVCSGAPKHCLVYETER 97
           H+ K W   R+SR +AE +L   P DG FLIR    T  YA++    G  KHC +    R
Sbjct: 16  HESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGTDSYAITFRARGKVKHCRINRDGR 75
Query: 98  GFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            F        + SL  LV +Y     E+H    K  L YPV
Sbjct: 76  HFVLGTS-AYFESLVELVSYY-----EKHALYRKMRLRYPV 110

>pdb|1MIL|A Chain A, Transforming Protein Length = 104

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 4/50 (8%)
Query: 49 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETE 96
          ++SR +AEALL  + +G FL+R STT  GQY L+ + SG PKH L+ + E
Sbjct: 13 KLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPE 60

>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed With A Tyrosine-Phosphorylated Peptide From The T-Cell Receptor, Minimized Average Structure Length = 107

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 4/50 (8%)
Query: 49 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETE 96
          ++SR +AEALL  + +G FL+R STT  GQY L+   SG PKH L+ + E
Sbjct: 13 KLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGSQSGQPKHLLLVDPE 60

>pdb|1R1P|A Chain A, Structural Basis For Differential Recognition Of Tyrosine Phosphorylated Sites In The Linker For Activation Of T Cells (lat) By The Adaptor Protein Gads Length = 100

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 50  MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG--FGFAEPF 105
           +SR QAE LL G+  G F+IR S +  G +++S+      +H  V    +G  F + E F
Sbjct: 16  LSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWTEKF 75
Query: 106 NIYPSLGALVLHYAANSLEEHN 127
              PSL  LV +Y   S+ +  
Sbjct: 76  ---PSLNKLVDYYRTTSISKQK 94

>pdb|2FCI|A Chain A, Structural Basis For The Requirement Of Two Phosphotyrosines In Signaling Mediated By Syk Tyrosine Kinase Length = 105

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 41  HDEKTWL-VRMSRAQAEALLSGRP-DGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETER 97
           H+ K W    ++RAQAE +L   P DG FL+R       YA+S    G  KHC V +  +
Sbjct: 6   HESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQEGQ 65
Query: 98  G--FGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
               G +E    + SL  L+ +Y     E+H    K  L YP+
Sbjct: 66  TVMLGNSE----FDSLVDLISYY-----EKHPLYRKMKLRYPI 99

>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 226

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 41  HDEKTWL-VRMSRAQAEALLSGRP-DGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETER 97
           H+ K W    ++RAQAE +L   P DG FL+R       YA+S    G  KHC V +  +
Sbjct: 119 HESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQEGQ 178
Query: 98  G--FGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA 142
               G +E    + SL  L+ +Y     E+H    K  L YP+   A
Sbjct: 179 TVMLGNSE----FDSLVDLISYY-----EKHPLYRKMKLRYPINEEA 216

>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1 Length = 246

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 41  HDEKTWL-VRMSRAQAEALLSGRP-DGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETER 97
           H+ K W    ++RAQAE +L   P DG FL+R       YA+S    G  KHC V +  +
Sbjct: 119 HESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQEGQ 178
Query: 98  G--FGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
               G +E    + SL  L+ +Y     E+H    K  L YP+
Sbjct: 179 TVMLGNSE----FDSLVDLISYY-----EKHPLYRKMKLRYPI 212

>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma Regulatory Region And Mechanism Of Autoinhibition And Activation Based On Key Roles Of Sh2 Domains Length = 246

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 41  HDEKTWL-VRMSRAQAEALLSGRP-DGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETER 97
           H+ K W    ++RAQAE +L   P DG FL+R       YA+S    G  KHC V +  +
Sbjct: 119 HESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQEGQ 178
Query: 98  G--FGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
               G +E    + SL  L+ +Y     E+H    K  L YP+
Sbjct: 179 TVMLGNSE----FDSLVDLISYY-----EKHPLYRKMKLRYPI 212

>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain Length = 119

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 50  MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 107
           +SR+ AE LLS   +G+FL+R S +  GQ ++S+   G   H  +  T  G  +    + 
Sbjct: 23  VSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADGKVYVTAESR 82
Query: 108 YPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
           + +L  LV H++  +     D L TTL YP
Sbjct: 83  FSTLAELVHHHSTVA-----DGLVTTLHYP 107

>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology 2 Domain Of C-Abl Length = 109

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 50  MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 107
           +SR  AE LLS   +G+FL+R S +  GQ ++S+   G   H  +     G  +    + 
Sbjct: 16  VSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESR 75
Query: 108 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGM 145
           + +L  LV H++  +     D L TTL YP  AP  G+
Sbjct: 76  FNTLAELVHHHSTVA-----DGLITTLHYP--APKRGI 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	148
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	3e-45
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	7e-45
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	2e-35
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	5e-31
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	3e-30
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	4e-27
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	1e-29
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	1e-25
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	4e-25
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	1e-24
2dly_A	121	FYN-related kinase; BRK family kinase, structural	1e-23
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	2e-23
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	1e-22
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	3e-20
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	1e-22
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	2e-22
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	3e-22
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	4e-22
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	6e-22
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	6e-22
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	9e-22
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	1e-21
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	2e-18
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	1e-21
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	3e-21
3gqi_B	226	Phospholipase C-gamma-1; phosphorylated kinase, PY	3e-21
3gqi_B	226	Phospholipase C-gamma-1; phosphorylated kinase, PY	1e-14
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	5e-21
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	7e-21
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	7e-21
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	2e-20
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	2e-20
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	4e-20
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	4e-20
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	4e-20
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	6e-20
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	9e-20
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	1e-19
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	1e-19
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	1e-19
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	2e-19
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	2e-19
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	4e-19
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	5e-19
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	5e-19
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	1e-18
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	1e-18
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	7e-18
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	1e-17
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	2e-17
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	3e-17
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-16
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	3e-16
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	2e-15
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-15
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	5e-15
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	7e-15
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-13
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-11
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-13
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	2e-13
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	2e-13
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-12
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-11
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-11
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	3e-11
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	4e-11
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	5e-11
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	1e-10
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	4e-09
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	3e-08
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	4e-08
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	8e-08
1uur_A	473	Stata protein, STAT protein; transcription activat	3e-07
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	1e-06
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	7e-06
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	7e-06
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	1e-05
2xp1_A	178	SPT6; transcription, IWS1, histone chaperone, mRNA	1e-04
3psi_A	1219	Transcription elongation factor SPT6; nucleus; 3.3	8e-04

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} Length = 302

 Score =  148 bits (375), Expect = 3e-45
 Identities = 65/113 (57%), Positives = 80/113 (70%), Gaps = 2/113 (1%)

Query: 31  LNRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
           L   E  LPHH+E+TW V +++R QAE +LSG+ DGTFLIR S+  G YA S+V  G  K
Sbjct: 181 LMEDEDALPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRESSQRGCYACSVVVDGDTK 240

Query: 89  HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
           HC++Y T  GFGFAEP+N+Y SL  LVLHY   SL +HND L  TLA+PV AP
Sbjct: 241 HCVIYRTATGFGFAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRAP 293

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A Length = 112

 Score =  141 bits (358), Expect = 7e-45
 Identities = 60/106 (56%), Positives = 75/106 (70%), Gaps = 2/106 (1%)

Query: 38  LPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYET 95
           +PHHDEKTW V   +R +AE LL G+ DGTFL+R S+  G YA S+V  G  KHC++ +T
Sbjct: 4   IPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKT 63

Query: 96  ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
             G+GFAEP+N+Y SL  LVLHY   SL +HND L  TLAYPV+A 
Sbjct: 64  ATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYAQ 109

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score =  118 bits (297), Expect = 2e-35
 Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 40  HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETE 96
            +    W    M R Q + LL     GT+LIR       ++A+SI  +   KH  V E +
Sbjct: 12  DYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKD 71

Query: 97  RGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG 144
                 E    + SL  LV +Y  +SL+E    L TTL YP   P+SG
Sbjct: 72  NWIHITEAKK-FDSLLELVEYYQCHSLKESFKQLDTTLKYPYSGPSSG 118

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A* Length = 138

 Score =  107 bits (269), Expect = 5e-31
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
            M RA AE++L+ R DGTFL+R       ++A+SI  +   KH  +   E  +   E   
Sbjct: 32  PMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEK-K 90

Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            +  L  LV  Y  NSL++    L TTL +P 
Sbjct: 91  AFRGLTELVEFYQQNSLKDCFKSLDTTLQFPF 122

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Length = 373

 Score =  111 bits (277), Expect = 3e-30
 Identities = 46/86 (53%), Positives = 59/86 (68%), Gaps = 2/86 (2%)

Query: 31  LNRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 88
           L   + DLPHHDEKTW V   +R +AE LL G+ DGTFL+R S+  G YA S+V  G  K
Sbjct: 288 LVEDDEDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVK 347

Query: 89  HCLVYETERGFGFAEPFNIYPSLGAL 114
           HC++ +T  G+GFAEP+N+Y SL  L
Sbjct: 348 HCVINKTATGYGFAEPYNLYSSLKEL 373

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Length = 373

 Score =  102 bits (256), Expect = 4e-27
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
            +SR +    L    DGTFL+R ++T   G Y L++   G  K   ++  +  +GF++P 
Sbjct: 16  DISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL 75

Query: 106 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
             + S+  L+ HY   SL ++N  L   L YPV
Sbjct: 76  T-FSSVVELINHYRNESLAQYNPKLDVKLLYPV 107

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A Length = 120

 Score =  103 bits (258), Expect = 1e-29
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
            +SR +    L    DGTFL+R ++T   G Y L++   G  K   ++  +  +GF++P 
Sbjct: 17  DISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL 76

Query: 106 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
             + S+  L+ HY   SL ++N  L   L YPV
Sbjct: 77  T-FSSVVELINHYRNESLAQYNPKLDVKLLYPV 108

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 93.5 bits (233), Expect = 1e-25
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 13/115 (11%)

Query: 38  LPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYE 94
           +   ++ +W    +SR+ AE LLS   +G+FL+R S +  GQ ++S+   G   H  +  
Sbjct: 10  VNSLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINT 69

Query: 95  TERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVF-----APASG 144
           T  G  +    + + +L  LV H+         D L TTL YP        P+SG
Sbjct: 70  TADGKVYVTAESRFSTLAELVHHH-----STVADGLVTTLHYPAPKCNKSGPSSG 119

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A* Length = 100

 Score = 91.1 bits (227), Expect = 4e-25
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
            +SR QAE LL G+  G F+IR S +  G +++S+      +H  V    +G  F     
Sbjct: 15  GLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWT-E 73

Query: 107 IYPSLGALVLHYAANSLEEHNDDL 130
            +PSL  LV +Y   S+ +     
Sbjct: 74  KFPSLNKLVDYYRTTSISKQKQVF 97

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus} Length = 124

 Score = 90.8 bits (226), Expect = 1e-24
 Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 9/101 (8%)

Query: 41  HDEKTWLV-RMSRAQAEALLSGRP-DGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETER 97
           H+ K W   R+SR +AE +L   P DG FLIR    T  YA++    G  KHC +    R
Sbjct: 16  HESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGTDSYAITFRARGKVKHCRINRDGR 75

Query: 98  GFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            F        + SL  LV +Y     E+H    K  L YPV
Sbjct: 76  HFVLGTSAY-FESLVELVSYY-----EKHALYRKMRLRYPV 110

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 121

 Score = 88.1 bits (219), Expect = 1e-23
 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 10/108 (9%)

Query: 39  PHHDEKTWLV-RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVY 93
                + W    + RA AE  L  S    G FLIR S +  G ++LS++  G  KH  + 
Sbjct: 11  RSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIR 70

Query: 94  ETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
             + G  F     ++ +L   V +Y   S     D L   L  P    
Sbjct: 71  RLDEGGFFLTRRKVFSTLNEFVNYYTTTS-----DGLCVKLEKPCLKI 113

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A Length = 112

 Score = 87.3 bits (217), Expect = 2e-23
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
            +SR  AE LLS   +G+FL+R S +  GQ ++S+   G   H  +     G  +    +
Sbjct: 11  PVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSES 70

Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + +L  LV H++  +     D L TTL YP 
Sbjct: 71  RFNTLAELVHHHSTVA-----DGLITTLHYPA 97

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A* Length = 254

 Score = 88.8 bits (220), Expect = 1e-22
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%)

Query: 39  PHHDEKTWLV-RMSRAQAEALL--SGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYE 94
             H++  W   ++SR ++E ++    + +G FLIR     G YAL ++  G   H  + +
Sbjct: 153 TAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNNGSYALCLLHEGKVLHYRIDK 212

Query: 95  TERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + G         + +L  LV HY         D L   L  P 
Sbjct: 213 DKTGKLSIPEGKKFDTLWQLVEHY-----SYKADGLLRVLTVPC 251

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A* Length = 254

 Score = 82.7 bits (204), Expect = 3e-20
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 49  RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 104
            ++R +AE  L   G  DG +L+R S    G +ALS+       H  +     G      
Sbjct: 11  NITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAG 70

Query: 105 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
              + S   L  +++  S     D L   L  P   P
Sbjct: 71  GRTHASPADLCHYHSQES-----DGLVCLLKKPFNRP 102

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} PDB: 1jwo_A Length = 98

 Score = 84.5 bits (210), Expect = 1e-22
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
           ++S  +A   L    DG FL+R S    G Y L +       H  V   +      E   
Sbjct: 11  KISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEA-V 69

Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + +L  +V HY      +    + T L  P 
Sbjct: 70  FFCNLMDMVEHY-----SKDKGAICTKLVRPK 96

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A Length = 106

 Score = 84.2 bits (209), Expect = 2e-22
 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
           +++R QAE LL     G FL+R ST   G Y L +   G  +H  +          E   
Sbjct: 14  KITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSIDEE-V 72

Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + +L  LV HY         D L T L  P 
Sbjct: 73  YFENLMQLVEHY-----TSDADGLCTRLIKPK 99

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 119

 Score = 84.3 bits (209), Expect = 3e-22
 Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 32  NRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTTGQ-YALSIVCSGAPKH 89
             +   L       W    +SR  AE LL  +P G+FLIR S +   Y LS     +  H
Sbjct: 4   GSSGGQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVGYTLSYKAQSSCCH 63

Query: 90  CLVYETERGFGF-AEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG 144
            +V   + G          + SL ALV  +    +E   + L          P+SG
Sbjct: 64  FMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIEPRRELLTQPCRQKDSGPSSG 119

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 125

 Score = 84.3 bits (209), Expect = 4e-22
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 19/118 (16%)

Query: 41  HDEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIV------CSGAPKHCL 91
            +   W    ++R QAE LL     +G F++R S   G Y +S+          A KH  
Sbjct: 13  LEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRHLGSYTISVFMGARRSTEAAIKHYQ 72

Query: 92  VYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVF-----APASG 144
           + + + G  +    + + S+  L+ ++     + +   L T L YPV       P+SG
Sbjct: 73  IKKNDSGQWYVAERHAFQSIPELIWYH-----QHNAAGLMTRLRYPVGLMGSSGPSSG 125

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A Length = 109

 Score = 83.5 bits (207), Expect = 6e-22
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 49  RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
            ++  +AE LL  R  DG+FL RPS +  G + LS+  +GA  H  +  T   +      
Sbjct: 13  NITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGG- 71

Query: 106 NIYPSLGALVLHYAANSLEEHNDD-LKTTLAYPV 138
             + +L  LV +Y  +  +    +     L YP+
Sbjct: 72  EKFATLAELVQYYMEHHGQLKEKNGDVIELKYPL 105

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens} Length = 125

 Score = 83.9 bits (208), Expect = 6e-22
 Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 17/117 (14%)

Query: 31  LNRTERDLPHHDEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIVCS--- 84
           +   E  +  ++   W    M+R+QAE LL     +G F++R S+  G+Y +S+      
Sbjct: 1   MTEAEDSIEMYE---WYSKHMTRSQAEQLLKQEGKEGGFIVRDSSKAGKYTVSVFAKSTG 57

Query: 85  ---GAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
              G  +H +V  T +   +    +++ ++  L+ ++     + ++  L + L YPV
Sbjct: 58  DPQGVIRHYVVCSTPQSQYYLAEKHLFSTIPELINYH-----QHNSAGLISRLKYPV 109

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ... Length = 117

 Score = 83.1 bits (206), Expect = 9e-22
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 49  RMSRAQAEALLS-GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
           ++ RA+AE +LS  R DG FLIR S +  G ++LS+      +H  V     G  F    
Sbjct: 12  KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV- 70

Query: 106 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
             + SL  LV ++ + S+   N  +       V
Sbjct: 71  VKFNSLNELVDYHRSTSVSR-NQQIFLRDIEQV 102

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A Length = 254

 Score = 86.5 bits (214), Expect = 1e-21
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 39  PHHDEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYE 94
             H+   W    ++R +AE  L    + DG FL+RP    G YALS++      H L+ +
Sbjct: 154 TAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQGTYALSLIYGKTVYHYLISQ 213

Query: 95  TERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + G         + +L  LV +      +   D L   L    
Sbjct: 214 DKAGKYCIPEGTKFDTLWQLVEYL-----KLKADGLIYCLKEAC 252

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A Length = 254

 Score = 77.6 bits (191), Expect = 2e-18
 Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 49  RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 104
            +SRA+AE  L  +G  DG FL+R      G Y LS+V      H  +     G      
Sbjct: 12  SISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAG 71

Query: 105 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
              +     L   Y+ +      D L   L  P   P
Sbjct: 72  GKAHCGPAELCEFYSRDP-----DGLPCNLRKPCNRP 103

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score = 82.3 bits (204), Expect = 1e-21
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 10/101 (9%)

Query: 41  HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETER 97
            D   W +  +SR +A+  L G+  G FL+R S+T  G Y LS+  +    H ++     
Sbjct: 16  SDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPN 75

Query: 98  GFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
                     +  L AL+  Y  + L+       TTL  P 
Sbjct: 76  RRFKIGD-QEFDHLPALLEFYKIHYLDT------TTLIEPA 109

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 110

 Score = 81.9 bits (203), Expect = 3e-21
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 14/107 (13%)

Query: 41  HDEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIVCS------GAPKHCL 91
            D+  W    +SR+Q+E LL     +G F++R S+  G Y +S+         G  KH  
Sbjct: 8   LDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQVGMYTVSLFSKAVNDKKGTVKHYH 67

Query: 92  VYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
           V+       +      + S+  L+ ++     + ++  + T L +PV
Sbjct: 68  VHTNAENKLYLAENYCFDSIPKLIHYH-----QHNSAGMITRLRHPV 109

>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition, tandem SH2 domains, A analog, ATP-binding, craniosynostosis, disease mutation; HET: PTR DVT ACP; 2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A* Length = 226

 Score = 85.0 bits (210), Expect = 3e-21
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 39  PHHDEKTWLV-RMSRAQAEALLSGRP-DGTFLIRPSTT-GQYALSIVCSGAPKHCLVYET 95
             H+ K W    ++RAQAE +L   P DG FL+R       YA+S    G  KHC V + 
Sbjct: 117 NAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQE 176

Query: 96  ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            +        + + SL  L+ +Y     E+H    K  L YP+
Sbjct: 177 GQTVML--GNSEFDSLVDLISYY-----EKHPLYRKMKLRYPI 212

>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition, tandem SH2 domains, A analog, ATP-binding, craniosynostosis, disease mutation; HET: PTR DVT ACP; 2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A* Length = 226

 Score = 67.2 bits (164), Expect = 1e-14
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 17/118 (14%)

Query: 41  HDEKTW------LVRMSRAQAEALL------SGRPDGTFLIRPSTT--GQYALSIVCSGA 86
           H  + W        R  R  AE LL      +G PDG+FL+R S T  G Y LS   +G 
Sbjct: 1   HSSEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGK 60

Query: 87  PKHCLVYETE---RGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
            +HC ++  +       F     ++ SL  L+ HY    L  +  +++ +   P    
Sbjct: 61  VQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRLSEPVPQTNA 118

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1 Length = 103

 Score = 80.8 bits (200), Expect = 5e-21
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 49  RMSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 100
            +++ + EALL  G  DG FLIR S +  G   L +          ++  + G+      
Sbjct: 9   CLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETD 68

Query: 101 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
              P  I+P+L  LV  Y      +    L   L+ P+
Sbjct: 69  AHTPRTIFPNLQELVSKY-----GKPGQGLVVHLSNPI 101

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 109

 Score = 80.7 bits (199), Expect = 7e-21
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 24/108 (22%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
           R+SR +A ALL G+  G FL+R S+T  G Y LS+  +    H ++  +           
Sbjct: 6   RLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPA 65

Query: 107 I----------------YPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
                            + SL AL+  Y  + L+       TTL  PV
Sbjct: 66  QPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT------TTLIEPV 107

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens} Length = 141

 Score = 81.8 bits (202), Expect = 7e-21
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 15/118 (12%)

Query: 36  RDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLV 92
            +L    ++ W    ++R +AE  L+  PDG+FL+R S+      +LS    G   H  +
Sbjct: 16  EELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRI 75

Query: 93  YETERGFGFAEP--FNIYPSLGALVLHYAANSL----------EEHNDDLKTTLAYPV 138
             +   F F E      + S+  L+ H   +S              +      L  PV
Sbjct: 76  EHSNGRFSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSATYPVRLTNPV 133

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A* Length = 104

 Score = 79.6 bits (197), Expect = 2e-20
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 6/92 (6%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
           ++SR +AEALL  + +G FL+R STT  GQY L+ + SG PKH L+ + E      +   
Sbjct: 13  KLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHR- 69

Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + S+  L+ ++  N L   +   +  L  PV
Sbjct: 70  -FESVSHLISYHMDNHLPIISAGSELCLQQPV 100

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 100

 Score = 79.1 bits (196), Expect = 2e-20
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 49  RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 104
            +SR++A   L   G   G FLIR S      Y LS+  + A +H  ++    G      
Sbjct: 8   CISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNE 67

Query: 105 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
              + SL  LV ++        +      LA P 
Sbjct: 68  AVSFLSLPELVNYH-----RAQSLSHGLRLAAPC 96

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A Length = 117

 Score = 78.9 bits (195), Expect = 4e-20
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 13/102 (12%)

Query: 49  RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG----FG 100
           R+SR +++ L+   G  DG FL+R S      + LS+      KH L+  +E      F 
Sbjct: 20  RISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFS 79

Query: 101 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA 142
             +    +  L  LV  +     + +   L   L +     A
Sbjct: 80  MDDGQTRFTDLLQLVEFH-----QLNRGILPCLLRHCCTRVA 116

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A* Length = 96

 Score = 78.4 bits (194), Expect = 4e-20
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 49  RMSRAQAEALLS-GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
           ++ RA+AE +LS  R DG FLIR S +  G ++LS+      +H  V     G  F    
Sbjct: 9   KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV- 67

Query: 106 NIYPSLGALVLHYAANSLEE 125
             + SL  LV ++ + S+  
Sbjct: 68  VKFNSLNELVDYHRSTSVSR 87

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A* Length = 102

 Score = 78.4 bits (194), Expect = 4e-20
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 49  RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
            ++R QAE  L+ R  +G FLIR S +    +++S+  SG  KH  V   +  +   +  
Sbjct: 11  NVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQ-- 68

Query: 106 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
             + ++  LV HY    +       K  L   +
Sbjct: 69  RRFHTMDELVEHYKKAPIFTSEHGEKLYLVRAL 101

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A Length = 105

 Score = 78.1 bits (193), Expect = 6e-20
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 13/98 (13%)

Query: 49  RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG----FG 100
           R+SR ++  ++   G  DG FL+R S +    + L++      K+  +   E      F 
Sbjct: 11  RISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFS 70

Query: 101 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
             +    +  L  LV  Y     + +   L   L +  
Sbjct: 71  LDDGNTKFSDLIQLVDFY-----QLNKGVLPCKLKHHC 103

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 169

 Score = 79.5 bits (196), Expect = 9e-20
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 15/105 (14%)

Query: 50  MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 107
           M+  +A+  L   P+GTFLIR S+       +S+  S  P +  +   +  F       +
Sbjct: 24  MTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIICV 83

Query: 108 ------YPSLGALVLHYAANSLE-------EHNDDLKTTLAYPVF 139
                 + S+  L+ +Y     +         N  +   L  P++
Sbjct: 84  KSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKPLY 128

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 119

 Score = 77.7 bits (192), Expect = 1e-19
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 49  RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 100
            ++R++AE LLS    DG+FL+R S +    YAL ++         +   E         
Sbjct: 16  NITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQAS 75

Query: 101 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
                  +  L  L+  Y     ++ N  L T L YPV
Sbjct: 76  EGVSMRFFTKLDQLIEFY-----KKENMGLVTHLQYPV 108

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A Length = 128

 Score = 77.8 bits (192), Expect = 1e-19
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 13/107 (12%)

Query: 49  RMSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 100
           ++SR   E LL +   DG++L+R S +  G Y L ++  G      V +TE G       
Sbjct: 10  KISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETA 69

Query: 101 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGMTV 147
                  +  +  L+  +     ++ +  +   L YPV   +S  + 
Sbjct: 70  PGVHKRYFRKIKNLISAF-----QKPDQGIVIPLQYPVEKKSSARST 111

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A* Length = 104

 Score = 77.0 bits (190), Expect = 1e-19
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 13/98 (13%)

Query: 49  RMSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 100
           ++SR   E LL +   DG++L+R S +  G Y L ++  G      V +TE G       
Sbjct: 10  KISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETA 69

Query: 101 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
                  +  +  L+  +     ++ +  +   L YPV
Sbjct: 70  PGVHKRYFRKIKNLISAF-----QKPDQGIVIPLQYPV 102

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C* Length = 111

 Score = 77.0 bits (190), Expect = 2e-19
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 49  RMSRAQAEALL---SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAE 103
            +SR +A  L+        G FL+R S T  G+  L+    G  KH  +     G    +
Sbjct: 15  MLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQCRVQ 74

Query: 104 PFNIYPSLGALVLHYAANSL-EEHNDDLKTTLAYPV 138
               + S+  ++ H+  + +  E        L   V
Sbjct: 75  -HLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYV 109

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 187

 Score = 78.8 bits (194), Expect = 2e-19
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 37  DLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVY 93
           DL   +        M +  AEALL G+P+GTFL+R S      +++S        H  + 
Sbjct: 27  DLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIE 86

Query: 94  ETERGFGFAE---PFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
           +    F F          P +  L+ HY   S        +  L+ P+
Sbjct: 87  QWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFF---EPLLSTPL 131

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 76.6 bits (189), Expect = 4e-19
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 15/113 (13%)

Query: 41  HDEKTWLV-RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETE 96
           H+ K W   ++S+ +A  LL       +FL+RPS    G Y+L    +   +   +  T 
Sbjct: 13  HEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTP 72

Query: 97  RGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV-----FAPASG 144
               F      Y S+G ++ HY      +        L  PV       P+SG
Sbjct: 73  NN-QFMMGGRYYNSIGDIIDHY-----RKEQIVEGYYLKEPVPMQDQSGPSSG 119

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus} Length = 152

 Score = 76.9 bits (189), Expect = 5e-19
 Identities = 27/135 (20%), Positives = 42/135 (31%), Gaps = 11/135 (8%)

Query: 18  PDTSCPPMPSLSA--LNRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT 74
            DTS       S          +    E  +    ++  +A  LLS  P GTFLIR S+ 
Sbjct: 6   LDTSLRLKTFSSKSEYQLVVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSD 65

Query: 75  --GQYALSIVCSGAPKHCLVYETERGFGF------AEPFNIYPSLGALVLHYAANSLEEH 126
               + LS+      K+  +      F         +P   +  +  LV HY        
Sbjct: 66  QRHFFTLSVKTQSGTKNLRIQXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYMPPQALPG 125

Query: 127 NDDLKTTLAYPVFAP 141
           +   +    Y     
Sbjct: 126 STPKRAYYIYSGGEK 140

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A* Length = 105

 Score = 75.8 bits (187), Expect = 5e-19
 Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 14/99 (14%)

Query: 49  RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 99
            +SR  AE  L   G   G+FLIR S +  G ++LS+           KH  +   + G 
Sbjct: 10  NLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGG 69

Query: 100 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            +  P   +P L  LV HY   S     D L T L+ P 
Sbjct: 70  FYISPRITFPGLHELVRHYTNAS-----DGLCTRLSRPC 103

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens} Length = 126

 Score = 75.5 bits (186), Expect = 1e-18
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 13/98 (13%)

Query: 49  RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--- 101
           ++SR +A+ L+   G  DG FL+R S +    + LS+      KH  +   E        
Sbjct: 32  KISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEMFHT 91

Query: 102 -AEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
             +    +  L  LV  Y     + +   L   L +  
Sbjct: 92  LDDGHTRFTDLIQLVEFY-----QLNKGVLPCKLKHYC 124

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens} Length = 116

 Score = 75.1 bits (185), Expect = 1e-18
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
            + R +A+ LL  +  G FL+R S    G+Y LS+   G  +H ++   +  + F     
Sbjct: 23  AIPRIEAQELL--KKQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRFEGTG- 79

Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + ++  L+ H+               L  P+
Sbjct: 80  -FSNIPQLIDHHYTTKQVITKKS-GVVLLNPI 109

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F* Length = 106

 Score = 73.1 bits (180), Expect = 7e-18
 Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 14/99 (14%)

Query: 49  RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCS-----GAPKHCLVYETERGF 99
           ++ R  AE  L   G P GTFLIR S T  G Y+LSI           KH  + + + G 
Sbjct: 11  KLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGG 70

Query: 100 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            +      + +L  LV HY+  +       L + L  P 
Sbjct: 71  YYITTRAQFETLQQLVQHYSERA-----AGLSSRLVVPS 104

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus} Length = 141

 Score = 73.4 bits (180), Expect = 1e-17
 Identities = 31/139 (22%), Positives = 47/139 (33%), Gaps = 23/139 (16%)

Query: 24  PMPSLSALNRTERDLPHHDEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPSTT----GQY 77
           P  S       +++     +  W      R  AE  L     DG+FLIR S+       Y
Sbjct: 8   PFNS----TFADQEAELLGKP-WYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPY 62

Query: 78  ALSIVCSGAPKHCLVYETERGFGFA-----EPFNIYPSLGALVLHYAANSL----EEHND 128
            L    +    +  V   E    +A          + S+  +V  +  N L     ++N 
Sbjct: 63  TLVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQNNT 122

Query: 129 DLKTTLAYPV---FAPASG 144
              T L Y V     P+SG
Sbjct: 123 KDSTRLKYAVKVSSGPSSG 141

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A Length = 131

 Score = 72.6 bits (178), Expect = 2e-17
 Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 27/118 (22%)

Query: 41  HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAP---------- 87
              K W    +SR QA ALL  +  G FLIR S +  G Y L++  +  P          
Sbjct: 17  DTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDP 76

Query: 88  -----KHCLVYETERGF---GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
                +H L+    +G    G       + SL ALV  ++ +        L   L  P
Sbjct: 77  VEQLVRHFLIETGPKGVKIKGCPSEP-YFGSLSALVSQHSISP-----ISLPCCLRIP 128

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus} Length = 164

 Score = 72.7 bits (178), Expect = 3e-17
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 50  MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF------ 101
           ++  +A  LLS  P GTFLIR S+     + LS+      K+  +      F        
Sbjct: 30  VTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGGSFSLQSDPRS 89

Query: 102 AEPFNIYPSLGALVLHYAANSL 123
            +P   +  +  LV HY     
Sbjct: 90  TQPVPRFDCVLKLVHHYMPPPG 111

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
            +SR  AE LLS   +G+FL+R S +  GQ ++S+   G   H  +     G  +    +
Sbjct: 111 PVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSES 170

Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + +L  LV H++  +     D L TTL YP 
Sbjct: 171 RFNTLAELVHHHSTVA-----DGLITTLHYPA 197

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B Length = 118

 Score = 68.9 bits (169), Expect = 3e-16
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 16/109 (14%)

Query: 41  HDEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIVCSGAP------KHCL 91
            +   W    +SR +AE LL     +G F++R S T G Y +S+            KH  
Sbjct: 6   LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKHYH 65

Query: 92  VYETERGFG--FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
           + ET       +     ++ S+  L+ ++     + +   L T L YPV
Sbjct: 66  IKETNDSPKRYYVAEKYVFDSIPLLIQYH-----QYNGGGLVTRLRYPV 109

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus} Length = 138

 Score = 67.6 bits (165), Expect = 2e-15
 Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 13/99 (13%)

Query: 51  SRAQAEALL------SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFG-- 100
           SR  AE LL      +G  DGTFL+R S T    Y LS   SG  +HC +  T       
Sbjct: 31  SRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMK 90

Query: 101 -FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            +      + S+ AL+ HY    L     + +  L  PV
Sbjct: 91  YYLTDNLTFNSIYALIQHYREAHLR--CAEFELRLTDPV 127

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A Length = 114

 Score = 67.0 bits (164), Expect = 2e-15
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 107
            + RA+   LL     G FL+R S    +Y LS++  G P+H ++   +  +        
Sbjct: 22  AIPRAEVAELL--VHSGDFLVRESQGKQEYVLSVLWDGLPRHFIIQSLDNLYRLEG--EG 77

Query: 108 YPSLGALVLHYAANSLEEHNDDLKTTLAYPV-FAPASG 144
           +PS+  L+ H  +             L   V   P+SG
Sbjct: 78  FPSIPLLIDHLLSTQQPLTKKS-GVVLHRAVPSGPSSG 114

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A Length = 114

 Score = 65.8 bits (161), Expect = 5e-15
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 13/98 (13%)

Query: 49  RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP----KHCLVYETERGFG 100
            +SR  AE  L       G+FLIR S +  G ++LS+          KH  +   + G  
Sbjct: 18  TISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGY 77

Query: 101 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
           +  P   +P+L ALV HY+        D L   L  P 
Sbjct: 78  YISPRITFPTLQALVQHYSKKG-----DGLCQKLTLPC 110

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens} Length = 125

 Score = 65.6 bits (160), Expect = 7e-15
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 49  RMSRAQAEALLSGRP-DGTFLIRPSTT-GQYALSIVCS---GAPKHCLVYETERGFGFA- 102
            +SR +A  +L   P  G  ++RP +    Y+++I         KH  V    + +    
Sbjct: 21  TVSRKEATEMLQKNPSLGNMILRPGSDSRNYSITIRQEIDIPRIKHYKVMSVGQNYTIEL 80

Query: 103 EPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
           E     P+L +++ ++      +            
Sbjct: 81  EKPVTLPNLFSVIDYF-----VKETRGNLRPFIAS 110

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 65.7 bits (160), Expect = 1e-13
 Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 49  RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 104
            +SRA+AE  L  +G  DG FL+R      G Y LS+V      H  +     G      
Sbjct: 14  SISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAG 73

Query: 105 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
              +     L   Y         D L   L  P 
Sbjct: 74  GKAHCGPAELCEFY-----SRDPDGLPCNLRKPC 102

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 60.0 bits (145), Expect = 1e-11
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 49  RMSRAQAEALL--SGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
            ++R +AE  L    + DG FL+RP    G YALS++      H L+ + + G       
Sbjct: 167 SLTREEAERKLYSGAQTDGKFLLRPRKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEG 226

Query: 106 NIYPSLGALVLHYAANS 122
             + +L  LV +    +
Sbjct: 227 TKFDTLWQLVEYLKLKA 243

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
           +++R QAE LL     G FL+R ST   G Y L + C G  +H  +          E   
Sbjct: 86  KITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVY 145

Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + +L  LV HY  ++     D L T L  P 
Sbjct: 146 -FENLMQLVEHYTTDA-----DGLCTRLIKPK 171

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 65.0 bits (157), Expect = 2e-13
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 41  HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETER 97
            D   W +  +SR +A+  L G+  G FL+R S+T  G Y LS+  +    H ++     
Sbjct: 9   SDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPN 68

Query: 98  GFGFAEPFNIYPSLGALVLHYAAN 121
              F      +  L AL+  Y  +
Sbjct: 69  RR-FKIGDQEFDHLPALLEFYKIH 91

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 63.8 bits (154), Expect = 2e-13
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 41  HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETER 97
            +  +W   R+SR +A ALL G+  G FL+R S+T  G Y LS+  +    H ++  +  
Sbjct: 10  EERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGP 69

Query: 98  GFGFAEPFNIYPS 110
                      P 
Sbjct: 70  RPPVPPSPAQPPP 82

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 62.3 bits (152), Expect = 2e-12
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 107
            + RA+   LL     G FL+R S    +Y LS++  G P+H ++   +  +        
Sbjct: 19  AIPRAEVAELL--VHSGDFLVRESQGKQEYVLSVLWDGLPRHFIIQSLDNLYRLEGEG-- 74

Query: 108 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
           +PS+  L+ H  +         L       +   
Sbjct: 75  FPSIPLLIDHLLSTQ-----QPLTKKSGVVLHRA 103

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 14/107 (13%)

Query: 41  HDEKTWLVRMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCL 91
             E+ +  +++R ++E LL  +  P GTFL+R S T  G Y LS+           KH  
Sbjct: 146 QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYK 205

Query: 92  VYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
           + + + G  +      + SL  LV +Y+ ++     D L   L    
Sbjct: 206 IRKLDSGGFYITSRTQFNSLQQLVAYYSKHA-----DGLCHRLTTVC 247

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 58.8 bits (141), Expect = 2e-11
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 41  HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETER 97
            +  +W   R+SR +A ALL G+  G FL+R S+T  G Y LS+  +    H ++  +  
Sbjct: 8   EERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGP 67

Query: 98  GFGFAE 103
                 
Sbjct: 68  RPPVPP 73

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 57.8 bits (139), Expect = 3e-11
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 39  PHHDEKTWLVRMSRAQAEALLS-GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYET 95
                  +  ++ RA+AE +LS  R DG FLIR S +  G ++LS+      +H  V   
Sbjct: 54  EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD 113

Query: 96  ERGFGFAEPFNIYPSLGALVLHYAANSL 123
             G  +      + SL  LV ++ + S+
Sbjct: 114 GAGK-YFLWVVKFNSLNELVDYHRSTSV 140

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 58.6 bits (142), Expect = 4e-11
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 14/104 (13%)

Query: 49  RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 99
           +++R ++E LL  +  P GTFL+R S T  G Y LS+           KH  + + + G 
Sbjct: 71  KITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGG 130

Query: 100 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPAS 143
            +      + SL  LV +Y+ ++     D L   L         
Sbjct: 131 FYITSRTQFNSLQQLVAYYSKHA-----DGLCHRLTTVCPTSKP 169

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 58.2 bits (141), Expect = 5e-11
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 14/99 (14%)

Query: 49  RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSI-----VCSGAPKHCLVYETERGF 99
            +SR  AE  L   G   G+F+IR S T  G Y+LS+           KH  +   + G 
Sbjct: 76  GISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGG 135

Query: 100 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            +  P + + +L  LV HY   +     D L   L+ P 
Sbjct: 136 FYISPRSTFSTLQELVDHYKKGN-----DGLCQKLSVPC 169

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 55.8 bits (134), Expect = 1e-10
 Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 14/121 (11%)

Query: 27  SLSALNRTERDLPHHDEKTWLVRMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIV 82
                N   +      E  +   +SR  AE  L   G   G+FLIR S +  G ++LS+ 
Sbjct: 58  GFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVR 117

Query: 83  CSGAP-----KHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
                     KH  +   + G  +  P   +P L  LV HY        +D L T L+ P
Sbjct: 118 DFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHY-----TNASDGLCTRLSRP 172

Query: 138 V 138
            
Sbjct: 173 C 173

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 51.3 bits (122), Expect = 4e-09
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 13/115 (11%)

Query: 41  HDEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPSTT-GQYALSIVCS---GAPKHCLVY 93
            + +++    MSR +A  LL       GTFL+R S+  G+Y+L++  +    A  H L+ 
Sbjct: 9   FEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIE 68

Query: 94  ETERGF------GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA 142
             E         G       +P + AL+ H+    L E +               
Sbjct: 69  RGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVG 123

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens} Length = 118

 Score = 48.2 bits (114), Expect = 3e-08
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 46  WLVRMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAP----KHCLVYETERG 98
             +++SR +A+ LL   P  G  L+RPS       +++           +H  V      
Sbjct: 24  CFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGPK 83

Query: 99  F--GFAEPFNIYPSLGALVLHYAANS 122
           +     +PF+   SL A+V ++ +++
Sbjct: 84  YVIDVEQPFSC-TSLDAVVNYFVSHT 108

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 49.8 bits (118), Expect = 4e-08
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 13/115 (11%)

Query: 41  HDEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPSTT-GQYALSIVCSGAP---KHCLVY 93
            + +++    MSR +A  LL       GTFL+R S+  G+Y+L++  +       H L+ 
Sbjct: 38  FEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIE 97

Query: 94  ETERGFGFAEP--FNI----YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA 142
             E            I    +P + AL+ H+    L E +               
Sbjct: 98  RGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVG 152

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 47.1 bits (111), Expect = 8e-08
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 54  QAEALLSGRPDGTFLIRPSTT--GQYALSIVCS-GAPKHCLVYETERGFGFAEPFNIYPS 110
           +A +      DG + IR S+T  G+  +    +    ++  ++E +  F       ++ S
Sbjct: 34  KATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRIFEKDSKFYLEGEV-LFVS 92

Query: 111 LGALVLHYAANSLEEHNDDLKTTLAYP---VFAPASG 144
           +G++V HY  + L  H       L +P      P+SG
Sbjct: 93  VGSMVEHYHTHVLPSHQS---LLLRHPYGYTSGPSSG 126

>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A* Length = 473

 Score = 47.7 bits (112), Expect = 3e-07
 Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 17/120 (14%)

Query: 26  PSLSALNRTERDLPHHDEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVC 83
            S+  L           E      M R +    L  +  GTF+IR S    GQ+ ++ + 
Sbjct: 334 KSMQTLRYQRHISTLWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIG 393

Query: 84  ---SGAPKHCLVYETERGFG---FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
                  KH LV   +       F +  + +             +L +   D      + 
Sbjct: 394 VEMPARIKHYLVQPNDTAAAKKTFPDFLSEHSQF---------VNLLQWTKDTNGAPRFL 444

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A* Length = 532

 Score = 43.3 bits (102), Expect = 7e-06
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 11/101 (10%)

Query: 49  RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--AE 103
            +S   AE LL GR   G+FL RPS    G ++LS+       H  +  +   +     E
Sbjct: 8   DLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGE 67

Query: 104 PFNIYPSLGALVLHYAAN--SLEEHNDDLKTTLAYPVFAPA 142
            F    +L  LV +Y      L++ +  +   L YP+    
Sbjct: 68  KF---ATLTELVEYYTQQQGVLQDRDGTI-IHLKYPLNCSD 104

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1 Length = 525

 Score = 43.3 bits (102), Expect = 7e-06
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 11/100 (11%)

Query: 49  RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--AE 103
            ++  +AE LL  R  DG+FL RPS +  G   LS+  +GA  H  +  T   +     E
Sbjct: 10  NITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYGGE 69

Query: 104 PFNIYPSLGALVLHY--AANSLEEHNDDLKTTLAYPVFAP 141
            F    +L  LV +Y      L+E N D+   L YP+   
Sbjct: 70  KF---ATLAELVQYYMEHHGQLKEKNGDV-IELKYPLNCA 105

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens} Length = 595

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 11/101 (10%)

Query: 49  RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--AE 103
            +S   AE LL GR   G+FL RPS    G ++LS+       H  +  +   +     E
Sbjct: 8   DLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGE 67

Query: 104 PFNIYPSLGALVLHYAAN--SLEEHNDDLKTTLAYPVFAPA 142
            F    +L  LV +Y      L++ +      L YP+    
Sbjct: 68  KF---ATLTELVEYYTQQQGVLQDRDGT-IIHLKYPLNCSD 104

>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae} Length = 178

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 50  MSRAQAEALLSGRPDGTFLIRPSTTGQY-ALSI-VCSGAPKHCLVYETERGFGFAEPFNI 107
            +  ++E  L       FLIR  +   Y  L I   S    H  + E    +  +     
Sbjct: 20  FNVTESENYLRSST-DDFLIRKGSRHGYCVLVIKFASDVFVHMKIEEHSEHYTCSN--KH 76

Query: 108 YPSLGALVLHYAANSLEEHNDDLKT 132
           +  +  ++  Y    +  +   +K 
Sbjct: 77  FEDIDEVISVYVRP-ILRNLKSIKA 100

>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} Length = 1219

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 50   MSRAQAEALLSGRPDGTFLIRPSTTGQYALSI---VCSGAPKHCLVYETERGFGFA 102
             +  QAE  L  +  G F+IR S+ G   L I   +     +H  + E E+    A
Sbjct: 1030 FNGRQAEDYLRSKERGEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELEKENPLA 1085

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	99.97
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	99.96
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	99.96
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	99.96
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	99.96
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	99.96
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	99.96
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	99.96
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	99.96
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	99.96
2lnw_A	122	VAV-2, guanine nucleotide exchange factor VAV2; si	99.95
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	99.95
2dly_A	121	FYN-related kinase; BRK family kinase, structural	99.95
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	99.95
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	99.95
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	99.95
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	99.95
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	99.95
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	99.95
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	99.95
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	99.95
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.95
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	99.95
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	99.95
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	99.95
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	99.95
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	99.95
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	99.95
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	99.95
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	99.94
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	99.94
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	99.94
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	99.94
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	99.94
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	99.94
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	99.94
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	99.94
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.94
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	99.93
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.93
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	99.93
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	99.93
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	99.93
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	99.93
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	99.93
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.93
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	99.92
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	99.92
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	99.92
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	99.92
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	99.92
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	99.92
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	99.92
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	99.92
4fbn_A	246	1-phosphatidylinositol 4,5-bisphosphate phosphodi	99.91
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	99.91
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	99.91
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.89
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.89
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.89
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.89
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.88
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.88
4fbn_A	246	1-phosphatidylinositol 4,5-bisphosphate phosphodi	99.88
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.87
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	99.78
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.85
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	99.84
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	99.84
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	99.82
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	99.82
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	99.81
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	99.8
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.79
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.79
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	99.77
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.76
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.74
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.74
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	99.73
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.71
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	99.69
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.68
2xp1_A	178	SPT6; transcription, IWS1, histone chaperone, mRNA	99.38
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	98.72
2xp1_A	178	SPT6; transcription, IWS1, histone chaperone, mRNA	98.45
1uur_A	473	Stata protein, STAT protein; transcription activat	98.22
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	97.56
1y1u_A	585	Signal transducer and activator of transcription;	97.24
1yvl_A	683	Signal transducer and activator of transcription 1	97.09
3psi_A	1219	Transcription elongation factor SPT6; nucleus; 3.3	96.98
1bg1_A	596	Protein (transcription factor STAT3B); protein-DNA	96.88
1bf5_A	575	Signal transducer and activator of transcription 1	96.32
3bux_B	329	E3 ubiquitin-protein ligase CBL; TKB, signal trans	96.0
3op0_A	323	Signal transduction protein CBL-C; structural geno	95.81
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	90.67
3psi_A	1219	Transcription elongation factor SPT6; nucleus; 3.3	90.04

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A

Probab=99.97  E-value=2.3e-31  Score=180.03  Aligned_cols=109  Identities=55%  Similarity=0.960  Sum_probs=97.1

Q ss_pred             CCCCCCccccccc-cCCHHHHHHHhcCCCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHH
Q psy8554          36 RDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGA  113 (148)
Q Consensus        36 ~~~~~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~e  113 (148)
                      ++++.++.++||| .|+|++||++|++.++|+||||+| .+|.|+||++.++.++||+|.+.++|+++.+....|+||.+
T Consensus         2 ~~~~~~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~   81 (112)
T 1h9o_A            2 SPIPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLKE   81 (112)
T ss_dssp             CSCGGGSGGGTBCCSCCHHHHHHHHTTCCTTEEEEEECSSTTCEEEEEEETTEEEEEEEEEETTEEESSTTCCCBSSHHH
T ss_pred             CCCccccCCCcccCCCCHHHHHHHhcCCCCceEEEeecCCCCCEEEEEEECCEEEEEEEEEcCCceEEeCCCCCcCCHHH
Confidence            4567788999999 999999999998889999999999 89999999999999999999998888777765578999999


Q ss_pred             HHHHHhhCCccccCCCccceecccccCCCCC
Q psy8554         114 LVLHYAANSLEEHNDDLKTTLAYPVFAPASG  144 (148)
Q Consensus       114 LI~~y~~~~l~~~~~~l~~~L~~Pv~~~~p~  144 (148)
                      ||+||++++|...++++.+.|+.||++++|.
T Consensus        82 LV~~y~~~~l~~~~~gl~~~L~~P~~~~~p~  112 (112)
T 1h9o_A           82 LVLHYQHTSLVQHNDSLNVTLAYPVYAQQRR  112 (112)
T ss_dssp             HHHHHHHSCGGGTCTTCCCCCCEETTC----
T ss_pred             HHHHHhhCcccccCCCcCeeCCCCcCCCCCC
Confidence            9999999999887789999999999998773

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A

Probab=99.96  E-value=3.4e-29  Score=169.22  Aligned_cols=100  Identities=30%  Similarity=0.446  Sum_probs=88.6

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      ++.++||| .|+|++||++|++.++|+||||+|  .+|.|+||++.++.++||+|.+..+|.+++.....|+||.|||+|
T Consensus         2 L~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~   81 (112)
T 3k2m_A            2 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHH   81 (112)
T ss_dssp             GGGSTTEEESCCHHHHHHHTTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEESSTTCCBSSHHHHHHH
T ss_pred             CccCcceeeCCCHHHHHHHhccCCCceEEEEeCCCCCCCEEEEEEeCCcEEEEEEEECCCCcEEECCCCeECCHHHHHHH
Confidence            46789999 999999999998889999999999  789999999999999999999988888888767899999999999


Q ss_pred             HhhCCccccCCCccceecccccC-CCCCC
Q psy8554         118 YAANSLEEHNDDLKTTLAYPVFA-PASGM  145 (148)
Q Consensus       118 y~~~~l~~~~~~l~~~L~~Pv~~-~~p~~  145 (148)
                      |+.+.     +++.++|+.||++ ..|.+
T Consensus        82 y~~~~-----~~l~~~L~~P~~~~~~p~~  105 (112)
T 3k2m_A           82 HSTVA-----DGLITTLHYPAPKRNKPTV  105 (112)
T ss_dssp             HHHCC-----TTSSSCCCEECCCC-----
T ss_pred             HhhCC-----CCCccCCCCCCCCCCCCCC
Confidence            99986     8999999999987 45543

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.96  E-value=5.5e-29  Score=169.77  Aligned_cols=104  Identities=34%  Similarity=0.493  Sum_probs=93.5

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      .++.++||| .|+|++||++|++.++|+||||+|  .+|.|+||++.++.++||+|.+. +|.|++.+...|+||.|||+
T Consensus        12 ~l~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~-~g~~~l~~~~~F~sl~~LV~   90 (118)
T 2dlz_A           12 DYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEK-DNWIHITEAKKFDSLLELVE   90 (118)
T ss_dssp             CGGGSTTEEESCCHHHHHHHHHHSCTTBEEEECCSCSSCCEEEEEECSSSEEEEEEEEE-TTEEESTTSCCBSSHHHHHH
T ss_pred             ccccCCceecCCCHHHHHHHhcCCCCCEEEEEeCCCCCCCEEEEEEECCcEEEEEEEEc-CCEEEEeCCcccCCHHHHHH
Confidence            457789999 999999999998789999999999  68999999999999999999986 56677665589999999999


Q ss_pred             HHhhCCccccCCCccceecccccCCCCC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFAPASG  144 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~~~p~  144 (148)
                      ||+.+++...+.++.++|+.||+++.|+
T Consensus        91 ~y~~~~l~~~~~gl~~~L~~Pv~~p~~g  118 (118)
T 2dlz_A           91 YYQCHSLKESFKQLDTTLKYPYSGPSSG  118 (118)
T ss_dssp             HHTTSCTTTTCTTCCCCCCBCCSCCCCC
T ss_pred             HHhhCcccccCCCcccEeCCcCCCCCCC
Confidence            9999998876678999999999998874

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A

Probab=99.96  E-value=6.5e-29  Score=164.06  Aligned_cols=94  Identities=24%  Similarity=0.358  Sum_probs=85.4

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      ++.++||| .|+|++||++|++.++|+||||+|  .+|.|+||++.++.++||+|.+.+ |.|++.+...|+||.+||+|
T Consensus         2 L~~~~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~~~~~~~~~~F~sl~~Lv~~   80 (98)
T 3us4_A            2 LSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRD-GHLTIDEAVFFCNLMDMVEH   80 (98)
T ss_dssp             CTTCTTBCCSCCHHHHHHHTCSCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEET-TEEESSSSSEESSHHHHHHH
T ss_pred             CccCcccCCCCCHHHHHHHccCCCCcEEEEEeCCCCCCcEEEEEEECCceEEEEEEEeC-CEEEECCCCccCCHHHHHHH
Confidence            46789999 999999999998889999999999  789999999999999999999864 55666656789999999999


Q ss_pred             HhhCCccccCCCccceecccccC
Q psy8554         118 YAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       118 y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      |+.++     +++.++|+.||+|
T Consensus        81 y~~~~-----~~l~~~L~~P~pk   98 (98)
T 3us4_A           81 YSKDK-----GAICTKLVRPKRK   98 (98)
T ss_dssp             HHHCC-----TTSSSCCCSBCCC
T ss_pred             hhhCC-----CCCeEcCCccCCC
Confidence            99997     8999999999976

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A

Probab=99.96  E-value=1.3e-28  Score=164.81  Aligned_cols=98  Identities=28%  Similarity=0.398  Sum_probs=87.9

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      .++.++||| .|+|++||++|++.++|+||||+|  .+|.|+||++.++.++||+|... +|.|++++...|+||.+||+
T Consensus         4 ~L~~~~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~-~g~~~l~~~~~F~sl~~Lv~   82 (106)
T 3eaz_A            4 KLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYH-ASKLSIDEEVYFENLMQLVE   82 (106)
T ss_dssp             TGGGCTTBCCSCCHHHHHHHTCSCCTTEEEEEECTTSTTCEEEEEEETTEEEEEECEEE-TTEEESSSSSCBSSHHHHHH
T ss_pred             ccccCCCcCCCCCHHHHHHHhCCCCCCEEEEEECCCCCCcEEEEEEeCCceEEEEEEec-CCEEEECCCCccCCHHHHHH
Confidence            457789999 999999999998889999999999  78999999999999999999975 56777776678999999999


Q ss_pred             HHhhCCccccCCCccceecccccCCCC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFAPAS  143 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~~~p  143 (148)
                      ||+.++     +++.++|+.||++..|
T Consensus        83 ~y~~~~-----~gl~~~L~~P~~~~~~  104 (106)
T 3eaz_A           83 HYTSDA-----DGLCTRLIKPKVMEGT  104 (106)
T ss_dssp             HHHHCC-----TTSSSCCCEECCCC--
T ss_pred             HHhhCC-----CCCCeecCCcCCCCCC
Confidence            999996     8999999999998655

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.96  E-value=4.6e-29  Score=170.39  Aligned_cols=101  Identities=33%  Similarity=0.472  Sum_probs=90.5

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      .++.++||| .|+|++||++|++.++|+||||+|  .+|.|+||++.++.++||+|.+..+|.|++.....|+||.|||+
T Consensus        12 ~l~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~   91 (119)
T 2ecd_A           12 SLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADGKVYVTAESRFSTLAELVH   91 (119)
T ss_dssp             CCCCSSSEEEECCHHHHHHHHHTSCTTBEEEEEESSSTTEEEEEEECSSCEEEECCCCCSSSCCCCCSSCCCSSHHHHHH
T ss_pred             ccccCccccCCCCHHHHHHHhcCCCCCeEEEEeCCCCCCCEEEEEEECCeEEEEEEEEcCCCCEEEcCCCcCCCHHHHHH
Confidence            456789999 999999999998889999999999  78999999999999999999987778777766689999999999


Q ss_pred             HHhhCCccccCCCccceecccccCC-CCCC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFAP-ASGM  145 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~~-~p~~  145 (148)
                      ||+.+.     +++.++|+.||+++ +|.+
T Consensus        92 ~y~~~~-----~gl~~~L~~P~~~~~~p~~  116 (119)
T 2ecd_A           92 HHSTVA-----DGLVTTLHYPAPKCNKSGP  116 (119)
T ss_dssp             HHHHCC-----TTSSSCCCBCCSSCCSSCC
T ss_pred             HHhhCC-----CCCceECCCccCCCCCCCC
Confidence            999986     88999999999985 4443

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*

Probab=99.96  E-value=2e-28  Score=163.53  Aligned_cols=94  Identities=34%  Similarity=0.537  Sum_probs=84.9

Q ss_pred             ccccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEe-----CCeeEEEEEEEeCCceEEecCCCCCCCH
Q psy8554          42 DEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVC-----SGAPKHCLVYETERGFGFAEPFNIYPSL  111 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~-----~~~v~H~~I~~~~~g~~~~~~~~~F~sl  111 (148)
                      +.++||| .|+|++||++|..  .++|+||||+|  .+|.|+||++.     ++.++||+|.+.++|.|++.+...|+||
T Consensus         2 ~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl   81 (105)
T 1lkk_A            2 EPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGL   81 (105)
T ss_dssp             CCCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSCBSSH
T ss_pred             CcCceecCCCCHHHHHHHHHhcCCCCceEEEEECCCCCCcEEEEEEEcccCCCCcEEEEEEEECCCCCEEECCCceeCCH
Confidence            5679999 9999999999964  69999999999  68999999998     6899999999887777887766899999


Q ss_pred             HHHHHHHhhCCccccCCCccceecccccC
Q psy8554         112 GALVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       112 ~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      .+||+||+.++     +++.++|+.||++
T Consensus        82 ~~LI~~y~~~~-----~~l~~~L~~P~~~  105 (105)
T 1lkk_A           82 HELVRHYTNAS-----DGLCTRLSRPCQT  105 (105)
T ss_dssp             HHHHHHHHHCC-----TTSSSCCCSBCCC
T ss_pred             HHHHHHHhhCC-----CCCccCCcCcCCC
Confidence            99999999996     8899999999975

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A

Probab=99.96  E-value=2.3e-28  Score=167.10  Aligned_cols=104  Identities=27%  Similarity=0.402  Sum_probs=90.9

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--C-CCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--T-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~-~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      ++.++||| .|+|++||++|++.++|+||||+|  . +|.|+||++.++.++||+|.+. +|.|++.....|+||.+||+
T Consensus         8 l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~g~y~LSv~~~~~v~H~~I~~~-~g~~~l~~~~~F~sl~~LI~   86 (120)
T 2iug_A            8 LQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHR-DGKYGFSDPLTFSSVVELIN   86 (120)
T ss_dssp             HHTCTTBCCSCCHHHHHHHHTTCCTTEEEEEECSSGGGCSEEEEEEETTEEEEEEEEEE-TTEEESSSSCCBSSHHHHHH
T ss_pred             cccCCccccCCCHHHHHHHhcCCCCcEEEEECCCCCCCCcEEEEEEECCEEEEEEEEEc-CCEEEECCCCccCCHHHHHH
Confidence            46679999 999999999998889999999999  4 7999999999999999999987 56666655578999999999


Q ss_pred             HHhhCCccccCCCccceecccccCCCCCC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFAPASGM  145 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~~~p~~  145 (148)
                      ||+.++++..++++.++|+.||+++....
T Consensus        87 ~y~~~~~~~~~~~l~~~L~~Pv~r~~~~~  115 (120)
T 2iug_A           87 HYRNESLAQYNPKLDVKLLYPVSKYQQDQ  115 (120)
T ss_dssp             HHHHSCGGGTCGGGCCCCCEECCTTTC--
T ss_pred             HHHhCccccccCCcceeeCCcCCcCcccc
Confidence            99999988766789999999999865543

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.96  E-value=1.3e-28  Score=163.35  Aligned_cols=93  Identities=28%  Similarity=0.322  Sum_probs=85.2

Q ss_pred             ccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHH
Q psy8554          44 KTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY  118 (148)
Q Consensus        44 ~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y  118 (148)
                      ++||| .|+|++||++|+.  .++|+||||+|  .+|.|+||++.++.++||+|.+.++|.|++.....|+||.|||+||
T Consensus         2 ~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y   81 (100)
T 1rja_A            2 EPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNYH   81 (100)
T ss_dssp             CCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECSSSCEEEETTEEESSHHHHHHHH
T ss_pred             CCcccCCCCHHHHHHHHhccCCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCCcEEECCCCccCCHHHHHHHH
Confidence            58999 9999999999986  68999999999  6799999999999999999999777878777667899999999999


Q ss_pred             hhCCccccCCCccceecccccCC
Q psy8554         119 AANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       119 ~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      +.++     .++.+.|+.||+++
T Consensus        82 ~~~~-----~~l~~~L~~p~~~~   99 (100)
T 1rja_A           82 RAQS-----LSHGLRLAAPCRKH   99 (100)
T ss_dssp             HHCC-----TTSSSCCCSBCCCC
T ss_pred             hhCC-----CCCCCCCCccCCCC
Confidence            9997     67899999999875

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*

Probab=99.96  E-value=1.6e-28  Score=163.84  Aligned_cols=94  Identities=28%  Similarity=0.390  Sum_probs=85.0

Q ss_pred             ccccccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecC-----CCCCCCHH
Q psy8554          42 DEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEP-----FNIYPSLG  112 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~-----~~~F~sl~  112 (148)
                      +.++||| .|+|++||++|.. .++|+||||+|  .+|.|+||++.++.++||+|.+.++|.|+++.     ...|+||.
T Consensus         2 ~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl~   81 (104)
T 1d4t_A            2 DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIK   81 (104)
T ss_dssp             TTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEECBCTTSCCCCBSSHH
T ss_pred             CCCceEccCCCHHHHHHHHHhcCCCCEEEEeeCCCCCCCEEEEEEECCeEEEEEEEECCCCeEEEeccCCCCCcccCCHH
Confidence            5679999 9999999999964 48999999999  78999999999999999999987788787763     57899999


Q ss_pred             HHHHHHhhCCccccCCCccceecccccC
Q psy8554         113 ALVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       113 eLI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      |||+||+.++     +++.++|+.||+|
T Consensus        82 ~LV~~y~~~~-----~~l~~~L~~P~~r  104 (104)
T 1d4t_A           82 NLISAFQKPD-----QGIVIPLQYPVEK  104 (104)
T ss_dssp             HHHHHHTSSS-----SSSSSCCCEECCC
T ss_pred             HHHHHHhhCC-----CCCeEECCCcCCC
Confidence            9999999997     8899999999975

>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A

Probab=99.95  E-value=2.9e-28  Score=167.16  Aligned_cols=101  Identities=32%  Similarity=0.457  Sum_probs=90.5

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      .++.++||| .|+|++||++|...++|+||||+|  .+|.|+||++.++.++||+|...++ .|++.....|+||.+||+
T Consensus        18 ~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~-~~~l~~~~~F~sl~eLV~   96 (122)
T 2lnw_A           18 DYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDN-WIHITEAKKFDSLLELVE   96 (122)
T ss_dssp             CSTTSTTBCCSCCHHHHHHHHHHSCTTBEEEEECCCSSEEEEEEEECSSCEEEEEEEEETT-EEESSSSCCBSSHHHHHH
T ss_pred             CcccCcCCCcCCCHHHHHHHhcCCCCCeEEEEeCCCCCCcEEEEEEeCCcEEEEEEEEcCC-EEEECCCCeECCHHHHHH
Confidence            457789999 999999999998789999999999  6899999999999999999998655 455555689999999999


Q ss_pred             HHhhCCccccCCCccceecccccCC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      ||+.++|....+++.++|+.||+++
T Consensus        97 ~y~~~~l~~~~~~l~~~L~~P~~~p  121 (122)
T 2lnw_A           97 YYQCHSLKESFKQLDTTLKYPYKSR  121 (122)
T ss_dssp             HHHHSCGGGTCTTCCCCCCBCSSSC
T ss_pred             HHhhCcCcccCCCcCeeeCCcCCCC
Confidence            9999999887899999999999875

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*

Probab=99.95  E-value=3.5e-28  Score=169.97  Aligned_cols=103  Identities=33%  Similarity=0.498  Sum_probs=92.6

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      ++.++||| .|+|++||++|++.++|+||||+|  .+|.|+||++.++.++||+|. ..+|.|++.....|+||.+||+|
T Consensus        23 ~~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~-~~~g~~~l~~~~~F~sl~eLV~~  101 (138)
T 2crh_A           23 LSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM-TAEGLYRITEKKAFRGLTELVEF  101 (138)
T ss_dssp             GGGSSSBCCSCCHHHHHHHTTTSCTTEEEEECCSSTTCCCEEEEEETTEEEEEECE-EETTEEESSTTCCBSSHHHHHHH
T ss_pred             CCcCCcccCCCCHHHHHHHhcCCCCCEEEEEECCCCCCCEEEEEEECCeEEEEEEE-eCCCEEEECCCCccCCHHHHHHH
Confidence            47789999 999999999998889999999999  679999999999999999995 56777887766899999999999


Q ss_pred             HhhCCccccCCCccceecccccCCCCC
Q psy8554         118 YAANSLEEHNDDLKTTLAYPVFAPASG  144 (148)
Q Consensus       118 y~~~~l~~~~~~l~~~L~~Pv~~~~p~  144 (148)
                      |+++++...++++.++|+.||+++.+.
T Consensus       102 y~~~~l~~~~~~l~~~L~~Pv~~~~~~  128 (138)
T 2crh_A          102 YQQNSLKDCFKSLDTTLQFPFKEPEKR  128 (138)
T ss_dssp             HTTSCGGGTCTTCCCCCCEESSCCCCC
T ss_pred             HHhCccccccCCcCcccCCccCCCCCC
Confidence            999999876788999999999986554

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.95  E-value=3.6e-28  Score=166.41  Aligned_cols=100  Identities=28%  Similarity=0.443  Sum_probs=88.9

Q ss_pred             CCccccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGAL  114 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eL  114 (148)
                      .++.++||| .|+|++||++|..  .++|+||||+|  .+|.|+||++.++.++||+|.+..+|.|++.....|+||.||
T Consensus        12 ~l~~~~WyhG~isR~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eL   91 (121)
T 2dly_A           12 SLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFFLTRRKVFSTLNEF   91 (121)
T ss_dssp             GGGGCSSBCSSCCHHHHHHHHTSSSCCTTCEEEEECSSSSSCEEEEEESSSCEEEEEEEECSSSCEEEETTEEESSHHHH
T ss_pred             ccCcCCccccCCCHHHHHHHHhcCCCCCCEEEEEcCCCCCCceEEEEEECCeEEEEEEEEcCCCCEEECCCCccCCHHHH
Confidence            357789999 9999999999964  58999999999  789999999999999999999877777777666789999999


Q ss_pred             HHHHhhCCccccCCCccceecccccCCCCC
Q psy8554         115 VLHYAANSLEEHNDDLKTTLAYPVFAPASG  144 (148)
Q Consensus       115 I~~y~~~~l~~~~~~l~~~L~~Pv~~~~p~  144 (148)
                      |+||+.++     .++.++|+.||+++.|.
T Consensus        92 V~~y~~~~-----~~l~~~L~~P~~~~~~~  116 (121)
T 2dly_A           92 VNYYTTTS-----DGLCVKLEKPCLKIQVS  116 (121)
T ss_dssp             HHHHTTCC-----SSSSSCCCSBCCCCCSS
T ss_pred             HHHHhhCC-----CCCceeCCeecCCCCCC
Confidence            99999997     77899999999986654

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens}

Probab=99.95  E-value=5.1e-28  Score=166.54  Aligned_cols=101  Identities=27%  Similarity=0.471  Sum_probs=90.1

Q ss_pred             CCCccccccc-cCCHHHHHHHhcCC-CCceEEEEeC-CCCCEEEEEEe------CCeeEEEEEEEeCCceEEecCCCCCC
Q psy8554          39 PHHDEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPS-TTGQYALSIVC------SGAPKHCLVYETERGFGFAEPFNIYP  109 (148)
Q Consensus        39 ~~~~~~~Wyh-~isr~~Ae~lL~~~-~~G~FLvR~s-~~~~~~Lsv~~------~~~v~H~~I~~~~~g~~~~~~~~~F~  109 (148)
                      ..++.++||| .|+|++||++|+.. ++|+||||+| .+|.|+||++.      ++.++||+|.+.++|.|++.....|+
T Consensus         6 ~~l~~~~WyhG~isR~eAe~lL~~~g~~G~FLVR~Ss~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~   85 (125)
T 2ge9_A            6 DSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSSKAGKYTVSVFAKSTGDPQGVIRHYVVCSTPQSQYYLAEKHLFS   85 (125)
T ss_dssp             CSSCCSSSEETTCCHHHHHHHHHHHTCTTEEEEEECSSSCCEEEEEEESSSSSTTCEEEEEECEEETTTEEESSTTSCBS
T ss_pred             cccccCCccccCCCHHHHHHHHhhcCCCceEEEEecCCCCCEEEEEEeccccCCCCeEEEEEEEEcCCCCEEECCCCcCC
Confidence            4568889999 99999999999764 8999999999 99999999997      47999999999888878876667999


Q ss_pred             CHHHHHHHHhhCCccccCCCccceecccccCCCCC
Q psy8554         110 SLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG  144 (148)
Q Consensus       110 sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~p~  144 (148)
                      ||.+||+||+.++     +++.++|+.||+++.+.
T Consensus        86 sl~eLV~~y~~~~-----~~l~~~L~~P~~~~~~~  115 (125)
T 2ge9_A           86 TIPELINYHQHNS-----AGLISRLKYPVSQQNKN  115 (125)
T ss_dssp             SHHHHHHHHHCCC-----TTCSCCSSEECCSSCCC
T ss_pred             CHHHHHHHhhhCC-----CCCceeCCCccCCCCCC
Confidence            9999999999997     78899999999986654

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus}

Probab=99.95  E-value=5.7e-28  Score=168.91  Aligned_cols=103  Identities=34%  Similarity=0.511  Sum_probs=86.6

Q ss_pred             Cccccccc-cC-CHHHHHHHhc------CCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCC-c--eEEecCCCC
Q psy8554          41 HDEKTWLV-RM-SRAQAEALLS------GRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETER-G--FGFAEPFNI  107 (148)
Q Consensus        41 ~~~~~Wyh-~i-sr~~Ae~lL~------~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~-g--~~~~~~~~~  107 (148)
                      +..++||| .| +|++||++|+      +.++|+||||+|  .+|.|+||++.++.++||+|.+.++ |  .|++.....
T Consensus        19 ~~~~~WyhG~i~sR~eAe~lL~~~c~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~gg~~~~~l~~~~~   98 (138)
T 2dx0_A           19 HFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNLT   98 (138)
T ss_dssp             TSCCTTBCTTCCCHHHHHHHHHHHHTTTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEEEETTEEEEESSTTSC
T ss_pred             ccCCCcccCCCCCHHHHHHHHHhhccccCCCCCEEEEEeCCCCCCCeEEEEEECCeEEEEEEEEecCCCceEEEeCCCCc
Confidence            46679999 99 8999999997      369999999999  6899999999999999999998754 3  677766689


Q ss_pred             CCCHHHHHHHHhhCCccccCCCccceecccccCCCCCC
Q psy8554         108 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGM  145 (148)
Q Consensus       108 F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~p~~  145 (148)
                      |+||.+||+||+.+++..  .++.++|+.||+++.|+.
T Consensus        99 F~sl~eLI~~y~~~~l~~--~gl~~~L~~Pv~~~~p~~  134 (138)
T 2dx0_A           99 FNSIYALIQHYREAHLRC--AEFELRLTDPVPNPNPSG  134 (138)
T ss_dssp             BSSHHHHHHHTTTSCCCC--GGGSSCCCCBCC------
T ss_pred             CCCHHHHHHHHhhCCCCC--CCcccccCccCCCCCCCC
Confidence            999999999999999864  688999999999988864

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.95  E-value=9.8e-28  Score=163.75  Aligned_cols=99  Identities=26%  Similarity=0.388  Sum_probs=88.1

Q ss_pred             CCccccccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecC-----CCCCCC
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEP-----FNIYPS  110 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~-----~~~F~s  110 (148)
                      .++.++||| .|+|++||++|+. .++|+||||+|  .+|.|+||++.++.++||+|.+..+|.|++..     ...|+|
T Consensus         6 ~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~s   85 (119)
T 2ysx_A            6 SGMVPCWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQASEGVSMRFFTK   85 (119)
T ss_dssp             SSCCCSSEEESCCHHHHHHHHHHHCCTTEEEEEECSSCTTSEEEEEECSSCEEEEEEEECTTSCEEECCSCSSSCCCBSS
T ss_pred             CCCCCccccCCCCHHHHHHHHhhcCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeccCCcCCcccCC
Confidence            457789999 9999999999975 78999999999  68999999999999999999987778777764     368999


Q ss_pred             HHHHHHHHhhCCccccCCCccceecccccCCCC
Q psy8554         111 LGALVLHYAANSLEEHNDDLKTTLAYPVFAPAS  143 (148)
Q Consensus       111 l~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~p  143 (148)
                      |.+||+||+.++     .++.++|+.||+++.+
T Consensus        86 l~eLV~~y~~~~-----~~l~~~L~~P~~~~~~  113 (119)
T 2ysx_A           86 LDQLIEFYKKEN-----MGLVTHLQYPVPLEEE  113 (119)
T ss_dssp             HHHHHHHTTSSS-----SSSSSCCCEECCCCCC
T ss_pred             HHHHHHHHhhCC-----CCCCeECCCcCCCCCC
Confidence            999999999987     6889999999998554

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.95  E-value=1.5e-27  Score=162.89  Aligned_cols=103  Identities=30%  Similarity=0.378  Sum_probs=88.9

Q ss_pred             CCCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEec-CCCCCCCHHHH
Q psy8554          39 PHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAE-PFNIYPSLGAL  114 (148)
Q Consensus        39 ~~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~-~~~~F~sl~eL  114 (148)
                      ..++.++||| .|+|++||++|++.++|+||||+|  .++ |+||++.++.++||+|.+.++|.|++. ....|+||.||
T Consensus        11 ~~~~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~~-y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~~F~sl~eL   89 (119)
T 2cs0_A           11 AQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDAL   89 (119)
T ss_dssp             CSSSCCSSBCSSCCHHHHHHHHHTSCTTCEEEEECSSSSS-EEEEECCSSSCEEEEEEECTTSCEECTTCSCCBSSHHHH
T ss_pred             ccccCCCccccCCCHHHHHHHhcCCCCCEEEEEecCCCCC-EEEEEEECCEEEEEEEEEcCCCcEEEecCCCcCCCHHHH
Confidence            4457789999 999999999998889999999999  555 999999999999999999877767664 45789999999


Q ss_pred             HHHHhhCCccccCCCccceecccccCCCCCCc
Q psy8554         115 VLHYAANSLEEHNDDLKTTLAYPVFAPASGMT  146 (148)
Q Consensus       115 I~~y~~~~l~~~~~~l~~~L~~Pv~~~~p~~~  146 (148)
                      |+||+.+++..    .++.|+.||+++.|.+.
T Consensus        90 V~~y~~~~l~~----~~~~L~~P~~~~~p~~~  117 (119)
T 2cs0_A           90 VTFHQQKPIEP----RRELLTQPCRQKDSGPS  117 (119)
T ss_dssp             HHHHTTSCCSS----CCCCCCSBCCCSSCCSS
T ss_pred             HHHHhhCcCCC----CCCEeCccCCCCCCCCC
Confidence            99999998653    24889999999887654

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A

Probab=99.95  E-value=5.6e-28  Score=163.65  Aligned_cols=98  Identities=32%  Similarity=0.506  Sum_probs=87.2

Q ss_pred             CCccccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEe----CCeeEEEEEEEeCCceEEecCCCCCCC
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVC----SGAPKHCLVYETERGFGFAEPFNIYPS  110 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~----~~~v~H~~I~~~~~g~~~~~~~~~F~s  110 (148)
                      .++.++||| .|+|++||++|..  .++|+||||+|  .+|.|+||++.    ++.++||+|...++|.|++.....|+|
T Consensus         8 ~l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   87 (114)
T 1blj_A            8 TLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITFPT   87 (114)
T ss_dssp             CSCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETTTEEEEETTEEESS
T ss_pred             ccccCCccCCCCCHHHHHHHHhhCCCCCceEEEEeCCCCCCCEEEEEEEecCCCCcEEEEEEEEcCCCCEEECCCcccCC
Confidence            356789999 9999999999974  58999999999  68999999998    689999999988777777766678999


Q ss_pred             HHHHHHHHhhCCccccCCCccceecccccCCC
Q psy8554         111 LGALVLHYAANSLEEHNDDLKTTLAYPVFAPA  142 (148)
Q Consensus       111 l~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~  142 (148)
                      |.|||+||+.++     +++.++|+.||+++.
T Consensus        88 l~~LV~~y~~~~-----~~l~~~L~~p~~~~~  114 (114)
T 1blj_A           88 LQALVQHYSKKG-----DGLCQKLTLPCVNLA  114 (114)
T ss_dssp             HHHHHHHHHHCC-----SSSSSCCCCCSCCCC
T ss_pred             HHHHHHHhhhCC-----CCCceecCccCCCCC
Confidence            999999999997     889999999998753

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.95  E-value=5.5e-28  Score=166.30  Aligned_cols=100  Identities=27%  Similarity=0.442  Sum_probs=88.7

Q ss_pred             CCCCCccccccc-cCCHHHHHHHhcC-CCCceEEEEeC-CCCCEEEEEEe------CCeeEEEEEEEeCCceEEecCCCC
Q psy8554          37 DLPHHDEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS-TTGQYALSIVC------SGAPKHCLVYETERGFGFAEPFNI  107 (148)
Q Consensus        37 ~~~~~~~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s-~~~~~~Lsv~~------~~~v~H~~I~~~~~g~~~~~~~~~  107 (148)
                      ....++.++||| .|+|++||++|+. .++|+||||+| .+|.|+||++.      ++.++||+|.+.++|.|++.....
T Consensus         9 ~~~~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~   88 (125)
T 2dm0_A            9 KITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRHLGSYTISVFMGARRSTEAAIKHYQIKKNDSGQWYVAERHA   88 (125)
T ss_dssp             CSCCCTTSSSBCCSCCHHHHHHHHHHHCSTTCBCEEEETTEEEEEEEEECCCSSSSSCCEEEEEEEECTTCCEESSSSCC
T ss_pred             CccccccCCcccCCCCHHHHHHHHhhcCCCCEEEEEecCCCCCEEEEEEeccccCCCCcEEEEEEEEcCCCCEEECCCCc
Confidence            334578889999 9999999999965 38999999999 89999999998      468999999998888778766679


Q ss_pred             CCCHHHHHHHHhhCCccccCCCccceecccccCC
Q psy8554         108 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       108 F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      |+||.+||+||+.++     +++.++|+.||+++
T Consensus        89 F~sl~eLV~~y~~~~-----~~l~~~L~~P~~~~  117 (125)
T 2dm0_A           89 FQSIPELIWYHQHNA-----AGLMTRLRYPVGLM  117 (125)
T ss_dssp             CSSHHHHHHHHTTCC-----CSSSCCCCSBCCSS
T ss_pred             cCCHHHHHHHhhhCC-----CCCccCCCCccCCC
Confidence            999999999999997     78899999999975

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.95  E-value=1e-27  Score=161.44  Aligned_cols=95  Identities=28%  Similarity=0.440  Sum_probs=85.4

Q ss_pred             CCccccccc-cCCHHHHHHHhcCC-CCceEEEEeC-CCCCEEEEEEe------CCeeEEEEEEEeCCceEEecCCCCCCC
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPS-TTGQYALSIVC------SGAPKHCLVYETERGFGFAEPFNIYPS  110 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~-~~G~FLvR~s-~~~~~~Lsv~~------~~~v~H~~I~~~~~g~~~~~~~~~F~s  110 (148)
                      .++.++||| .|+|++||++|+.. ++|+||||+| .+|.|+||++.      ++.++||+|.+.++|.|++.....|+|
T Consensus         7 ~l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   86 (110)
T 2ekx_A            7 GLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQVGMYTVSLFSKAVNDKKGTVKHYHVHTNAENKLYLAENYCFDS   86 (110)
T ss_dssp             CTTTSSSBCCSCCHHHHHHHHHHTCCTTEEEEEECSSTTCEEEEECCCCSSCSSCCCEEEECEECTTCCEESSTTCCCSC
T ss_pred             cccCCCeecCCCCHHHHHHHHhccCCCceEEEEecCCCCCEEEEEEeccccCCCCcEEEEEEEECCCCCEEECCCCccCC
Confidence            457789999 99999999999765 9999999999 99999999996      478999999998778777766679999


Q ss_pred             HHHHHHHHhhCCccccCCCccceeccccc
Q psy8554         111 LGALVLHYAANSLEEHNDDLKTTLAYPVF  139 (148)
Q Consensus       111 l~eLI~~y~~~~l~~~~~~l~~~L~~Pv~  139 (148)
                      |.+||+||+.++     +++.++|+.||+
T Consensus        87 l~~LV~~y~~~~-----~~l~~~L~~Pv~  110 (110)
T 2ekx_A           87 IPKLIHYHQHNS-----AGMITRLRHPVS  110 (110)
T ss_dssp             HHHHHHHHHHSC-----CSSSCCCCEECC
T ss_pred             HHHHHHHHeeCC-----CCCceecCccCC
Confidence            999999999997     889999999985

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A*

Probab=99.95  E-value=5e-28  Score=161.57  Aligned_cols=98  Identities=33%  Similarity=0.454  Sum_probs=87.9

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      ++.++||| .|+|++||++|+  ++|+||||+|  .+|.|+||++.++.++||+|. ..+|.|.++. ..|+||.+||+|
T Consensus         4 l~~~~Wyhg~isR~~Ae~lL~--~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~-~~~g~~~~~~-~~F~sl~~LI~~   79 (104)
T 1mil_A            4 LRGEPWFHGKLSRREAEALLQ--LNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLV-DPEGVVRTKD-HRFESVSHLISY   79 (104)
T ss_dssp             TTTCTTBCSSCCHHHHHTTCC--STTEEEEEECCSSCSSEEEEEEETTEEEEEEEB-CTTSSEECSS-CEESSHHHHHHH
T ss_pred             cccCCcCCCCCCHHHHHHHhc--cCCcEEEEeCCCCCCCEEEEEEECCEEEEEEEE-eCCCEEEECC-ceeCCHHHHHHH
Confidence            47789999 999999999998  7999999999  689999999999999999996 5567777764 789999999999


Q ss_pred             HhhCCccccCCCccceecccccCCC
Q psy8554         118 YAANSLEEHNDDLKTTLAYPVFAPA  142 (148)
Q Consensus       118 y~~~~l~~~~~~l~~~L~~Pv~~~~  142 (148)
                      |+.++++...+|+.+.|+.||++++
T Consensus        80 y~~~~~p~~~~g~~~~L~~Pv~r~~  104 (104)
T 1mil_A           80 HMDNHLPIISAGSELCLQQPVERKL  104 (104)
T ss_dssp             HHHHTCCEEETTEEECCCEECCCCC
T ss_pred             HhhCCCccccCCceEEeCccCCCCC
Confidence            9999988766789999999999863

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.95  E-value=1.4e-27  Score=163.02  Aligned_cols=99  Identities=25%  Similarity=0.346  Sum_probs=87.9

Q ss_pred             CCccccccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  115 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI  115 (148)
                      .++.++||| .|+|++||++|+. ..+|+||||+|  .+|.|+||++.++.++||+|.+.++|.|+++. ..|.||.|||
T Consensus        12 ~l~~~~WyhG~isR~~Ae~lL~~~g~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~-~~F~sl~~LI   90 (119)
T 2gsb_A           12 PHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGG-RYYNSIGDII   90 (119)
T ss_dssp             SGGGCSSBCCSSCHHHHHHHHHHTCCSSEEEEEECSSSTTCEEEEEECSSCBCCCCEEEETTTEEEESS-CCBSCHHHHH
T ss_pred             ccccCCcccCCCCHHHHHHHHhhcCCCCeEEEEeCCCCCCceEEEEEECCEEEEEEEEEcCCCCEEECC-cccCCHHHHH
Confidence            467789999 9999999999975 47899999999  68999999999999999999998888888875 7899999999


Q ss_pred             HHHhhCCccccCCCccceecccccCCCCC
Q psy8554         116 LHYAANSLEEHNDDLKTTLAYPVFAPASG  144 (148)
Q Consensus       116 ~~y~~~~l~~~~~~l~~~L~~Pv~~~~p~  144 (148)
                      +||+.++     .++.+.|+.||+++.|.
T Consensus        91 ~~y~~~~-----l~~~~~L~~Pv~~~~~~  114 (119)
T 2gsb_A           91 DHYRKEQ-----IVEGYYLKEPVPMQDQS  114 (119)
T ss_dssp             HHHTTSC-----SBTTBCCCCCCCCCCCC
T ss_pred             HHHhhCc-----cCCCCEeCCccCCCCCC
Confidence            9999987     44679999999986543

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1

Probab=99.95  E-value=9.7e-28  Score=159.75  Aligned_cols=93  Identities=27%  Similarity=0.461  Sum_probs=83.3

Q ss_pred             cccccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEec-----CCCCCCCHHH
Q psy8554          43 EKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAE-----PFNIYPSLGA  113 (148)
Q Consensus        43 ~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~-----~~~~F~sl~e  113 (148)
                      .++||| .|+|++||++|.. .++|+||||+|  .+|.|+||++.++.++||+|.+.++|.|+++     ....|+||.|
T Consensus         2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl~~   81 (103)
T 1i3z_A            2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIFPNLQE   81 (103)
T ss_dssp             CCTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECTTSCEEECBCTTSCCCEESSSHH
T ss_pred             CCccccCCCCHHHHHHHHhhcCCCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEECCCCeEEEeccCCCCCcccCCHHH
Confidence            368999 9999999999974 68999999999  7889999999999999999998778877776     3578999999


Q ss_pred             HHHHHhhCCccccCCCccceecccccC
Q psy8554         114 LVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       114 LI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      ||+||+.++     +++.+.|+.||+|
T Consensus        82 LV~~y~~~~-----~~l~~~L~~P~~R  103 (103)
T 1i3z_A           82 LVSKYGKPG-----QGLVVHLSNPIMR  103 (103)
T ss_dssp             HHHHTTSSS-----SSSSSCCCEECC-
T ss_pred             HHHHHhhCC-----CCCeEEcCCccCC
Confidence            999999986     8899999999975

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B

Probab=99.95  E-value=2.1e-27  Score=161.62  Aligned_cols=98  Identities=27%  Similarity=0.414  Sum_probs=86.5

Q ss_pred             CCccccccc-cCCHHHHHHHhcC-CCCceEEEEeC-CCCCEEEEEEeC------CeeEEEEEE--EeCCceEEecCCCCC
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS-TTGQYALSIVCS------GAPKHCLVY--ETERGFGFAEPFNIY  108 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s-~~~~~~Lsv~~~------~~v~H~~I~--~~~~g~~~~~~~~~F  108 (148)
                      .++.++||| .|+|++||++|+. .++|+||||+| .+|.|+||++..      +.++||+|.  ...+|.|++.....|
T Consensus         5 ~l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~~~g~~~~~~~~~F   84 (118)
T 3s9k_A            5 NLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYVAEKYVF   84 (118)
T ss_dssp             CGGGSTTBCTTCCHHHHHHHHHHHCCTTCEEEEECSSTTCEEEEEEECCSCSSSCEEEEEEEEECSCSSCCEEEECSCCC
T ss_pred             ccccCceecCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCEEEEEEecccccCCCceEEEEEeEEECCCCCEEECCCccc
Confidence            357789999 9999999999965 47999999999 999999999996      899999994  456677777666789


Q ss_pred             CCHHHHHHHHhhCCccccCCCccceecccccCCC
Q psy8554         109 PSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA  142 (148)
Q Consensus       109 ~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~  142 (148)
                      +||.+||+||+.++     +++.++|+.||+++.
T Consensus        85 ~sl~~LV~~y~~~~-----~~l~~~L~~Pv~~~~  113 (118)
T 3s9k_A           85 DSIPLLIQYHQYNG-----GGLVTRLRYPVCGSP  113 (118)
T ss_dssp             SCHHHHHHHHHHCC-----TTSSSCCCCCCCCST
T ss_pred             CCHHHHHHHheeCC-----CCCccCCCCcCCCCC
Confidence            99999999999997     789999999998755

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A

Probab=99.95  E-value=2.5e-27  Score=158.35  Aligned_cols=95  Identities=24%  Similarity=0.365  Sum_probs=80.9

Q ss_pred             Cccccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeC-Cc--eEEec-CCCCCCCH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETE-RG--FGFAE-PFNIYPSL  111 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~-~g--~~~~~-~~~~F~sl  111 (148)
                      ++.++||| .|+|++||++|..  .++|+||||+|  .+|.|+||++.++.++||+|...+ +|  +|.++ ....|+||
T Consensus         2 h~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~~F~sl   81 (105)
T 1nrv_A            2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDL   81 (105)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC-----CCEESSTTSSCBSSH
T ss_pred             CccCcccCCCCCHHHHHHHHHhcCCCCceEEEEeCCCCCCCEEEEEEeCCEEEEEEEEEEcCCCCEEEEEcCCCcccCCH
Confidence            45679999 9999999999964  48999999999  689999999999999999999854 45  34454 34789999


Q ss_pred             HHHHHHHhhCCccccCCCccceecccccC
Q psy8554         112 GALVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       112 ~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      .+||+||+.++     +++.++|+.||++
T Consensus        82 ~~LV~~y~~~~-----~~l~~~L~~p~~r  105 (105)
T 1nrv_A           82 IQLVDFYQLNK-----GVLPCKLKHHCIR  105 (105)
T ss_dssp             HHHHHHHTTCC-----TTSSSCCCEECCC
T ss_pred             HHHHHHhhhCC-----CCCcEeCCCcCCC
Confidence            99999999986     7899999999975

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A

Probab=99.95  E-value=1.2e-27  Score=165.20  Aligned_cols=97  Identities=28%  Similarity=0.387  Sum_probs=86.8

Q ss_pred             ccccccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecC-----CCCCCCHH
Q psy8554          42 DEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEP-----FNIYPSLG  112 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~-----~~~F~sl~  112 (148)
                      +.++||| .|+|++||++|.. .++|+||||+|  .+|.|+||++.++.++||+|.+.++|.|+++.     ...|+||.
T Consensus         2 ~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl~   81 (128)
T 1ka6_A            2 DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIK   81 (128)
T ss_dssp             CCCSSBCCSCCHHHHHHHHHHHCCTTCEEEEECSSSTTCEEEEEESSSCEEEEEEEECTTSCEEEECSTTSCCCEESSHH
T ss_pred             CCCcccCCCCCHHHHHHHHhcCCCCCEEEEeecCCCCCCEEEEEEeCCEEEEEEEEECCCCeEEEeecCCCCCCccCCHH
Confidence            5679999 9999999999964 58999999999  78999999999999999999987788787763     57899999


Q ss_pred             HHHHHHhhCCccccCCCccceecccccCCCC
Q psy8554         113 ALVLHYAANSLEEHNDDLKTTLAYPVFAPAS  143 (148)
Q Consensus       113 eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~p  143 (148)
                      +||+||+.++     .++.++|+.||+++.+
T Consensus        82 ~LV~~y~~~~-----~gl~~~L~~P~~~~~~  107 (128)
T 1ka6_A           82 NLISAFQKPD-----QGIVIPLQYPVEKKSS  107 (128)
T ss_dssp             HHHHHTTSSC-----SSSSSCCCSBCCSSCC
T ss_pred             HHHHHHhhCC-----CCCcEEcCCcCCCCCC
Confidence            9999999986     7899999999997653

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*

Probab=99.95  E-value=3.5e-28  Score=162.60  Aligned_cols=95  Identities=32%  Similarity=0.501  Sum_probs=85.0

Q ss_pred             Cccccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEe-----CCeeEEEEEEEeCCceEEecCCCCCCC
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVC-----SGAPKHCLVYETERGFGFAEPFNIYPS  110 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~-----~~~v~H~~I~~~~~g~~~~~~~~~F~s  110 (148)
                      ++.++||| .|+|++||++|..  .++|+||||+|  .+|.|+||++.     ++.++||+|.+.++|.|++.....|+|
T Consensus         2 l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   81 (106)
T 1aot_F            2 IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFET   81 (106)
T ss_dssp             CCSSSSCCBSCCHHHHHHHHHTTTCCTTEECCBCBSSSSSBBCCEEECCBTTTBCCEEECCBEEETTTEEEEETTEEESS
T ss_pred             CccCccCCCCCCHHHHHHHHhhCCCCCcEEEEEeCCCCCCCEEEEEEecccCCCCcEEEEEEEEeCCCCEEECCCCccCC
Confidence            46789999 9999999999964  58999999999  68999999996     689999999988777777766678999


Q ss_pred             HHHHHHHHhhCCccccCCCccceecccccC
Q psy8554         111 LGALVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       111 l~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      |.+||+||+.++     ++++++|+.||++
T Consensus        82 l~~LV~~y~~~~-----~~l~~~L~~p~~~  106 (106)
T 1aot_F           82 LQQLVQHYSERA-----AGLSSRLVVPSHK  106 (106)
T ss_dssp             HHHHHHHHTTCC-----TTSSSCSCSSCCC
T ss_pred             HHHHHHHhccCC-----CCCcEeecccCCC
Confidence            999999999986     8899999999975

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A

Probab=99.95  E-value=3.1e-27  Score=160.66  Aligned_cols=96  Identities=27%  Similarity=0.352  Sum_probs=81.4

Q ss_pred             Cccccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEe-CCce-EE-ec-CCCCCCCH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYET-ERGF-GF-AE-PFNIYPSL  111 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~-~~g~-~~-~~-~~~~F~sl  111 (148)
                      ++.++||| .|+|++||++|+.  +++|+||||+|  .+|.|+||++.++.++||+|.+. ++|. ++ ++ +...|+||
T Consensus        11 ~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~~F~sl   90 (117)
T 3pqz_A           11 HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDL   90 (117)
T ss_dssp             GGGCTTBCCSCCHHHHHHHHHHTTCCTTEEEEEECCC-CCCEEEEEEETTEEEEEEEEEECCTTCCEEESSTTSSCBSSH
T ss_pred             cccCccccCCCCHHHHHHHHhcCCCCCCEEEEEecCCCCCcEEEEEEeCCeeEEEEEEEecCCCCEEEEECCCCcccCCH
Confidence            56679999 9999999999964  67999999999  57999999999999999999986 4563 34 32 24789999


Q ss_pred             HHHHHHHhhCCccccCCCccceecccccCC
Q psy8554         112 GALVLHYAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       112 ~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      .|||+||+.++     +++.++|+.||++.
T Consensus        91 ~~LV~~y~~~~-----~~l~~~L~~P~~~~  115 (117)
T 3pqz_A           91 LQLVEFHQLNR-----GILPCLLRHCCTRV  115 (117)
T ss_dssp             HHHHHHHHHCC-----TTSSSCCCEECC--
T ss_pred             HHHHHHHhhCC-----CCCcEECCCcCccc
Confidence            99999999997     88999999999874

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus}

Probab=99.95  E-value=1.9e-27  Score=166.81  Aligned_cols=121  Identities=26%  Similarity=0.206  Sum_probs=94.3

Q ss_pred             CCCCCCCccccccccCCCCCCccccccc-cCCHHHHHHHhcC-CCCceEEEEeC-C---CCCEEEEEEeCCeeEEEEEEE
Q psy8554          21 SCPPMPSLSALNRTERDLPHHDEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS-T---TGQYALSIVCSGAPKHCLVYE   94 (148)
Q Consensus        21 ~~p~~p~~~~~~~~~~~~~~~~~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s-~---~~~~~Lsv~~~~~v~H~~I~~   94 (148)
                      |.|+.|......+.+..+   +.++||| .|+|++||++|.. .++|+||||+| .   +|.|+||++.++.++||+|.+
T Consensus         3 ~~~~~~~~~~~~~~~~~l---~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~~~g~y~LSv~~~~~v~H~~I~~   79 (141)
T 2eo6_A            3 SGSSGPFNSTFADQEAEL---LGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRF   79 (141)
T ss_dssp             SCCSSTTCCHHHHHHHTT---TTCSSEEESCCHHHHHHHHHHHCCTTCBCEEECSTTCSSCSEEEEEEETTEEEEEEECE
T ss_pred             CCCCCCCCCCCCcccccc---CCCCeEecCCCHHHHHHHhhccCCCceEEEEECCCCCCCCCEEEEEEECCEEEEEEEEE
Confidence            445555555555544344   7789999 9999999999953 68999999999 5   589999999999999999987


Q ss_pred             eCCce-EEec----CCCCCCCHHHHHHHHhhCCcccc----CCCccceecccccCCCCC
Q psy8554          95 TERGF-GFAE----PFNIYPSLGALVLHYAANSLEEH----NDDLKTTLAYPVFAPASG  144 (148)
Q Consensus        95 ~~~g~-~~~~----~~~~F~sl~eLI~~y~~~~l~~~----~~~l~~~L~~Pv~~~~p~  144 (148)
                      .++|. |+++    ....|+||.|||+||+.+++...    ..+..+.|++||.+..+.
T Consensus        80 ~~~g~~~~l~~~~~~~~~F~sl~eLV~~y~~~~~~l~~~~~~~~~~~~L~~Pv~~~~~~  138 (141)
T 2eo6_A           80 IEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQNNTKDSTRLKYAVKVSSGP  138 (141)
T ss_dssp             ETTTTEECSSSCCTTCCCBSSHHHHHHHHHHSCCCCCCSSSCCCCCCCCCCBCCCCCCS
T ss_pred             eCCCCEEEEccccCCCCccCCHHHHHHHHhhCCccceecccCCCCceEeCcCcccCCCC
Confidence            66665 5665    24789999999999999986541    223378999999876443

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A

Probab=99.94  E-value=3.2e-27  Score=158.76  Aligned_cols=101  Identities=27%  Similarity=0.409  Sum_probs=83.4

Q ss_pred             CCccccccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  115 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI  115 (148)
                      ++++++||| .|+|++||++|+. .++|+||||+|  .+|.|+||++.++.++||+|... ++.|.+.....|+||.+||
T Consensus         3 ~l~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~-~~~~~~~~~~~F~sl~~LV   81 (109)
T 3tkz_A            3 HMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNT-GDYYDLYGGEKFATLAELV   81 (109)
T ss_dssp             ----CCSBCTTCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEEC-SSCEESSSSCCBSSHHHHH
T ss_pred             ccccCCceecCCCHHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEeC-CCEEEecCCcccCCHHHHH
Confidence            457789999 9999999999965 48999999999  78999999999999999999875 4556555557899999999


Q ss_pred             HHHhhCCccc-cCCCccceecccccCC
Q psy8554         116 LHYAANSLEE-HNDDLKTTLAYPVFAP  141 (148)
Q Consensus       116 ~~y~~~~l~~-~~~~l~~~L~~Pv~~~  141 (148)
                      +||+.++++. .++|+.+.|++||.++
T Consensus        82 ~~y~~~~~~l~~~~gl~~~L~~Pv~~~  108 (109)
T 3tkz_A           82 QYYMEHHGQLKEKNGDVIELKYPLNCA  108 (109)
T ss_dssp             HHHHHSTTSEEETTSCBCCCCEECC--
T ss_pred             HHHHhCcCccccCCCceEECCCcccCC
Confidence            9999998653 2578999999999875

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.94  E-value=1e-26  Score=156.90  Aligned_cols=93  Identities=28%  Similarity=0.415  Sum_probs=84.0

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      ++.++||| .|+|++||++|++.++|+||||+|  .+|.|+||++.++.++||+|....+|.|+++. ..|+||.|||+|
T Consensus        16 ~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~-~~F~sl~~LV~~   94 (111)
T 2eo3_A           16 SDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGD-QEFDHLPALLEF   94 (111)
T ss_dssp             TCHHHHEEESCCHHHHHHHHSSCCTTCEEEEECSSSSSCEEEEEEETTEEEEEEEEEETTTEEEETT-CCBSSHHHHHHH
T ss_pred             cCCCCcccCCCCHHHHHHHhcCCCCceEEEEeecCCCCCEEEEEEeCCeEEEEEEEEcCCCCEEECC-cccCCHHHHHHH
Confidence            46679999 999999999999889999999999  68999999999999999999987778787765 789999999999


Q ss_pred             HhhCCccccCCCccceecccccC
Q psy8554         118 YAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       118 y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      |+.+++.      .+.|+.||+|
T Consensus        95 y~~~~l~------~~~L~~Pv~r  111 (111)
T 2eo3_A           95 YKIHYLD------TTTLIEPAPR  111 (111)
T ss_dssp             HTTSCSS------SSCCCCBCCC
T ss_pred             HhhCCCC------CccCCCcCcC
Confidence            9999853      4899999975

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=99.94  E-value=4.6e-27  Score=182.56  Aligned_cols=115  Identities=57%  Similarity=0.975  Sum_probs=97.4

Q ss_pred             cccccCCCCCCccccccc-cCCHHHHHHHhcCCCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCC
Q psy8554          31 LNRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIY  108 (148)
Q Consensus        31 ~~~~~~~~~~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F  108 (148)
                      +.+.++.++.+..++||| .|+|++||.+|.+.++|+||||.| .+|.|+||++.++.++||+|...++|+++.+....|
T Consensus       181 l~~~~~~~~~l~~~~WyhG~IsR~eAE~lL~~~~~GtFLVR~Ss~~g~y~LSv~~~~~V~H~rI~~~~~g~~~~~~~~~F  260 (302)
T 2y3a_B          181 LMEDEDALPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRESSQRGCYACSVVVDGDTKHCVIYRTATGFGFAEPYNLY  260 (302)
T ss_dssp             -------CGGGSSTTTBCCSCCHHHHHHHHTTSCTTBEEBCCCSSTTCEEEEEECSSSEEEEEEEEETTEEESBTTBCCC
T ss_pred             ccccccccccccCCCccCCCCCHHHHHHHhcCCCCCcEEEEeccCCCceEEEEEeCCeeEEEEEEECCCceEEeCCCCCC
Confidence            334445667788899999 999999999998889999999999 999999999999999999999988887777655789


Q ss_pred             CCHHHHHHHHhhCCccccCCCccceecccccCCCCCC
Q psy8554         109 PSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASGM  145 (148)
Q Consensus       109 ~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~p~~  145 (148)
                      +||.+||+||+.++|...++|+.++|+.||+++.|.+
T Consensus       261 ~SL~eLV~~Y~~~~L~~~~~gl~~~L~~Pv~~~~P~~  297 (302)
T 2y3a_B          261 GSLKELVLHYQHASLVQHNDALTVTLAHPVRAPGPGP  297 (302)
T ss_dssp             SSHHHHHHTTSSSCSTTTCSSCCCCCSBCSCCCC---
T ss_pred             CCHHHHHHHHHhCCccccCCCCceeeCCccCCCCCCC
Confidence            9999999999999998777899999999999877653

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*

Probab=99.94  E-value=4.1e-27  Score=156.62  Aligned_cols=96  Identities=25%  Similarity=0.337  Sum_probs=83.9

Q ss_pred             ccccccc-cCCHHHHHHHh-cCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          42 DEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL-~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      +.++||| .|+|++||++| +..++|+||||+|  .+|.|+||++.++.++||+|.. .+|.|+++. ..|+||.|||+|
T Consensus         3 ~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~-~~g~~~l~~-~~F~sl~~LV~~   80 (102)
T 2cia_A            3 LGSEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQL-VDNVYCIGQ-RRFHTMDELVEH   80 (102)
T ss_dssp             --CTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEECCSSSCEEEEEEE-ETTEEEETT-EEESSHHHHHHH
T ss_pred             cCCccccCCCCHHHHHHHHhhCCCCcEEEEEECCCCCCCEEEEEEeCCeeEEEEEEe-cCCEEEECC-cCcCCHHHHHHH
Confidence            4578999 99999999999 4579999999999  6899999999999999999995 466677765 689999999999


Q ss_pred             HhhCCccccCCCccceeccccc
Q psy8554         118 YAANSLEEHNDDLKTTLAYPVF  139 (148)
Q Consensus       118 y~~~~l~~~~~~l~~~L~~Pv~  139 (148)
                      |++++|...+.+..+.|++|++
T Consensus        81 y~~~~l~~~~~~~~~~L~~Pip  102 (102)
T 2cia_A           81 YKKAPIFTSEHGEKLYLVRALQ  102 (102)
T ss_dssp             HHHSCSEECTTSCEECCCEECC
T ss_pred             HhhCccccCCCCceEEeCCCCC
Confidence            9999988755678899999985

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}

Probab=99.94  E-value=1.6e-26  Score=157.11  Aligned_cols=98  Identities=22%  Similarity=0.346  Sum_probs=86.1

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      .+..++||| .|+|++||++|+  ++|+||||+|  .+|.|+||++.++.++||+|.. .+|.|.+++ ..|+||.|||+
T Consensus        13 ~~~~~~WyhG~isR~eAe~lL~--~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~-~~g~y~~~~-~~F~sl~eLV~   88 (116)
T 2kk6_A           13 PLAEQDWYHGAIPRIEAQELLK--KQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQY-VDNMYRFEG-TGFSNIPQLID   88 (116)
T ss_dssp             CTTTCTTEEESCCHHHHHHTCC--STTCEEEEECTTCTTCEEEEEEETTEEEEEEEEE-ETTEEESSS-CEESCHHHHHH
T ss_pred             ccccCCCccCCCCHHHHHHHhc--cCCcEEEEECCCCCCcEEEEEEECCeEEEEEEEe-cCCEEEECC-CEeCCHHHHHH
Confidence            356679999 999999999998  7999999999  6899999999999999999996 456677764 78999999999


Q ss_pred             HHhhCCccccCCCccceecccccCCC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFAPA  142 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~~~  142 (148)
                      ||+.+++++. .++.+.|+.||++++
T Consensus        89 ~y~~~~~~i~-~~~~~~L~~Pv~r~~  113 (116)
T 2kk6_A           89 HHYTTKQVIT-KKSGVVLLNPIPKDK  113 (116)
T ss_dssp             HHHHTTCCSC-TTTTCCCCSCCCCCC
T ss_pred             HHhhCCCCcc-CCCCCeECcccCCCC
Confidence            9999987763 568899999999873

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...

Probab=99.94  E-value=1.3e-26  Score=157.76  Aligned_cols=101  Identities=28%  Similarity=0.377  Sum_probs=85.6

Q ss_pred             CCccccccc-cCCHHHHHHHhcCC-CCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  115 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~-~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI  115 (148)
                      .++.++||| .|+|++||++|+.. ++|+||||+|  .+|.|+||++.++.++||+|.+..+|.|++++ ..|+||.+||
T Consensus         2 ~L~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~-~~F~sl~eLV   80 (117)
T 3ov1_A            2 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV-VKFNSLNELV   80 (117)
T ss_dssp             -CCCCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSS-CEESSHHHHH
T ss_pred             CcccCCcccCCCCHHHHHHHHhCCCCCCcEEEEeCCCCCCCEEEEEecCCceEEEEEEECCCCeEEECC-CCcCCHHHHH
Confidence            356789999 99999999999764 6899999999  78999999999999999999988888888876 7899999999


Q ss_pred             HHHhhCCccccCCCccceecccccCCCCC
Q psy8554         116 LHYAANSLEEHNDDLKTTLAYPVFAPASG  144 (148)
Q Consensus       116 ~~y~~~~l~~~~~~l~~~L~~Pv~~~~p~  144 (148)
                      +||+++++..   +....|+.|++.|+|.
T Consensus        81 ~~y~~~~l~~---~~~~~L~~~~~~P~~~  106 (117)
T 3ov1_A           81 DYHRSTSVSR---NQQIFLRDIEQVPQQP  106 (117)
T ss_dssp             HHTTTSCSCS---SSCCCCBCCCCCC---
T ss_pred             HHHhhCCCCC---CCceEecCCCcCCCCC
Confidence            9999999763   3356777888776664

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C*

Probab=99.94  E-value=9.2e-27  Score=157.12  Aligned_cols=99  Identities=20%  Similarity=0.273  Sum_probs=84.4

Q ss_pred             CCccccccc-cCCHHHHHHHhcCC---CCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGR---PDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGA  113 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~---~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~e  113 (148)
                      .++.++||| .|+|++||++|...   ++|+||||+|  .+|.|+||++.++.++||+|.+.++|.|+++. ..|+||.+
T Consensus         5 ~l~~~~WyhG~isR~~Ae~lL~~~g~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~-~~F~sl~~   83 (111)
T 2hdv_A            5 PLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQCRVQH-LHFQSIFD   83 (111)
T ss_dssp             CGGGSTTEEEECCHHHHHHHHHTTGGGGTTEEEEEECSSCTTEEEEEEEETTEEEEEEEEECTTCCEEETT-EEESSHHH
T ss_pred             ccccCCCcCCCCCHHHHHHHHHHcCCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCCCEEeCC-ceeCCHHH
Confidence            357789999 99999999999764   8999999999  78899999999999999999987788888874 78999999


Q ss_pred             HHHHHhhCCccccCCC-ccceeccccc
Q psy8554         114 LVLHYAANSLEEHNDD-LKTTLAYPVF  139 (148)
Q Consensus       114 LI~~y~~~~l~~~~~~-l~~~L~~Pv~  139 (148)
                      ||+||+.++++....+ ..+.|+.+|+
T Consensus        84 LV~~y~~~~l~~~~~~~~~v~L~~~v~  110 (111)
T 2hdv_A           84 MLEHFRVHPIPLESGGSSDVVLVSYVP  110 (111)
T ss_dssp             HHHHHTTSCCC-------CCCCCEECC
T ss_pred             HHHHHhhCCcccccCCccceEcccccc
Confidence            9999999999886666 6889998875

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens}

Probab=99.94  E-value=2.4e-26  Score=158.34  Aligned_cols=95  Identities=26%  Similarity=0.383  Sum_probs=82.7

Q ss_pred             Cccccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEe-CCceEEe--c-CCCCCCCH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYET-ERGFGFA--E-PFNIYPSL  111 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~-~~g~~~~--~-~~~~F~sl  111 (148)
                      ++.++||| .|+|++||++|..  +++|+||||+|  .+|.|+||++.++.++||+|.+. ++|.++.  + ....|+||
T Consensus        23 l~~~~WyhG~isR~eAe~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~G~~~~~l~~~~~~F~SL  102 (126)
T 2aug_A           23 HRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEMFHTLDDGHTRFTDL  102 (126)
T ss_dssp             GGGSTTEETTCCHHHHHHHHHTTTCCTTEEEEEECSSSSCCEEEEEEETTEEEEEEEEEEEETTEEEEESSTTSSCBSSH
T ss_pred             cccCCcccCCCCHHHHHHHHhccCCCCCEEEEeecCCCCCCEEEEEEcCCeEEEEEEEEECCCCeEEEEeCCCCCccCCH
Confidence            56779999 9999999999975  47999999999  68999999999999999999985 3565432  3 34789999


Q ss_pred             HHHHHHHhhCCccccCCCccceecccccC
Q psy8554         112 GALVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       112 ~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      .|||+||+.++     +++.++|+.||+|
T Consensus       103 ~eLV~~y~~~~-----~~l~~~L~~P~~r  126 (126)
T 2aug_A          103 IQLVEFYQLNK-----GVLPCKLKHYCAR  126 (126)
T ss_dssp             HHHHHHHTTCC-----TTSSSCCCEECCC
T ss_pred             HHHHHHHhhCC-----CCCceecCCCcCC
Confidence            99999999987     7899999999975

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}

Probab=99.94  E-value=2.5e-26  Score=157.83  Aligned_cols=96  Identities=33%  Similarity=0.485  Sum_probs=84.3

Q ss_pred             CCccccccc-cCCHHHHHHHhcCC-CCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~-~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      .++.++||| .|+|++||++|+.. .+|+||||+| .+|.|+||++.++.++||+|.++ ++.|.++....|+||.|||+
T Consensus        15 ~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~g~y~LSv~~~~~v~H~~I~~~-~~~~~~~~~~~F~sl~~LV~   93 (124)
T 2eob_A           15 PHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGTDSYAITFRARGKVKHCRINRD-GRHFVLGTSAYFESLVELVS   93 (124)
T ss_dssp             STTTSTTEESSCCHHHHHHHHHHCCSSSEEEEECCTTSSCEEEEEEETTEEEEEEEEES-SSCEESSSSCCBSSHHHHHH
T ss_pred             ccCcCCCeecCCCHHHHHHHHhcCCCCCEEEEEecCCCCCEEEEEEeCCeEEEEEEEEC-CCEEEECCCCcCCCHHHHHH
Confidence            356789999 99999999999765 6899999999 89999999999999999999874 56677766566999999999


Q ss_pred             HHhhCCccccCCCccceecccccCC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      ||+.++     .++.++|+.||+++
T Consensus        94 ~y~~~~-----~~~~~~L~~P~~~~  113 (124)
T 2eob_A           94 YYEKHA-----LYRKMRLRYPVTPE  113 (124)
T ss_dssp             HHTTSC-----SSSSCCSCEECCHH
T ss_pred             HHhhCC-----CCCCcCCCCcCCcH
Confidence            999997     55789999999863

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens}

Probab=99.93  E-value=2.5e-26  Score=156.75  Aligned_cols=93  Identities=16%  Similarity=0.142  Sum_probs=79.2

Q ss_pred             Cccccccc-cCCHHHHHHHhc-CCCCceEEEEeC-CCCCEEEEEEe---CCeeEEEEEEEeCCceEEecC--CCCCCCHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLS-GRPDGTFLIRPS-TTGQYALSIVC---SGAPKHCLVYETERGFGFAEP--FNIYPSLG  112 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~-~~~~G~FLvR~s-~~~~~~Lsv~~---~~~v~H~~I~~~~~g~~~~~~--~~~F~sl~  112 (148)
                      +..++||| +|+|.+||++|. ...+|+||||+| ..+.|+||++.   ++.|+||+|.+. +|.|++..  ...|+||.
T Consensus        12 l~~epWff~~isR~eAE~lL~~~~~~GaFLVR~Se~~~~ySLSVR~~~~~~~VKHYkI~~~-~G~y~I~~~~~~~F~SL~   90 (125)
T 3maz_A           12 LNPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSDSRNYSITIRQEIDIPRIKHYKVMSV-GQNYTIELEKPVTLPNLF   90 (125)
T ss_dssp             CCCCCTTBCCCCHHHHHHHHHHCGGGCSEEEEECTTSSSEEEEEEECSSSCEEEEEEEEEE-TTEEEECSSSCEEESSHH
T ss_pred             ccCCCCCcCCCCHHHHHHHHhccCCCCcEEEEeCCCCCCEEEEEEecCCCCCEeeeEEEEe-CCEEEEecCCCcCcCCHH
Confidence            46679999 999999999884 456899999999 55699999998   689999999998 67788773  34699999


Q ss_pred             HHHHHHhhCCccccCCCccceeccccc
Q psy8554         113 ALVLHYAANSLEEHNDDLKTTLAYPVF  139 (148)
Q Consensus       113 eLI~~y~~~~l~~~~~~l~~~L~~Pv~  139 (148)
                      |||+||++++     +|++++|..||.
T Consensus        91 eLV~yY~~~a-----dGl~~~L~~~c~  112 (125)
T 3maz_A           91 SVIDYFVKET-----RGNLRPFIASTD  112 (125)
T ss_dssp             HHHHHHHHHT-----TTCCCBCCC---
T ss_pred             HHHHHHHhCC-----CcCccccccccc
Confidence            9999999997     999999999994

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A

Probab=99.93  E-value=6.5e-26  Score=153.67  Aligned_cols=99  Identities=25%  Similarity=0.389  Sum_probs=85.8

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY  118 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y  118 (148)
                      ++.++||| .|+|++||++|.  ++|+||||+| ....|+||++.++.++||+|... +|.|.++. ..|+||.+||+||
T Consensus        13 l~~~~WyhG~isR~eAe~lL~--~~G~FLVR~S~~~~~y~LSv~~~~~v~H~~I~~~-~g~~~~~~-~~F~sl~~LV~~y   88 (114)
T 1wqu_A           13 LHEQLWYHGAIPRAEVAELLV--HSGDFLVRESQGKQEYVLSVLWDGLPRHFIIQSL-DNLYRLEG-EGFPSIPLLIDHL   88 (114)
T ss_dssp             GGGCTTEEESCCHHHHHTTCC--STTEEEEEECSSSCCEEEEEEETTEEEEEECEEC-SSSEESSS-CCBSSHHHHHHHH
T ss_pred             cccCCcEeeCCCHHHHHHHhc--cCCeEEEEEcCCCCCEEEEEEECCEEEEEEEEec-CCEEEECC-CCCCCHHHHHHHH
Confidence            47789999 999999999998  6999999999 44499999999999999999876 45676664 7899999999999


Q ss_pred             hhCCccccCCCccceecccccCCCCC
Q psy8554         119 AANSLEEHNDDLKTTLAYPVFAPASG  144 (148)
Q Consensus       119 ~~~~l~~~~~~l~~~L~~Pv~~~~p~  144 (148)
                      +.+.++. ..++.+.|+.||+++.+.
T Consensus        89 ~~~~~~~-~~~~~~~L~~Pv~r~~~s  113 (114)
T 1wqu_A           89 LSTQQPL-TKKSGVVLHRAVPSGPSS  113 (114)
T ss_dssp             HHHCCCS-CTTTCCCCCEECCSCTTC
T ss_pred             HHCCCCc-CCCCCcEECcccCCCCCC
Confidence            9987665 356789999999987654

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.93  E-value=7.8e-26  Score=162.97  Aligned_cols=104  Identities=22%  Similarity=0.340  Sum_probs=86.5

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCC-------CCCCC
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPF-------NIYPS  110 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~-------~~F~s  110 (148)
                      ++.++||| .|+|++||++|++.++|+||||+|  .+|.|+||++.++.++||+|... +|.|++++.       ..|+|
T Consensus        14 l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~rI~~~-~g~~~l~~~~~~~~~~~~F~s   92 (169)
T 2c9w_A           14 LGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQ-DGKFRLDSIICVKSKLKQFDS   92 (169)
T ss_dssp             HHHTSCBCTTCCHHHHHHHHTTSCTTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEE-TTEEEECTTTTTGGGCCCBSC
T ss_pred             cccCCccccCCCHHHHHHHcCCCCCcEEEEecCCCCCCeEEEEEEECCeeEEEEEEEe-CCEEEEccccCccccCCCCCC
Confidence            46789999 999999999998889999999999  78999999999999999999986 566666553       78999


Q ss_pred             HHHHHHHHhhCCccc-------cCCCccceecccccCCCCCC
Q psy8554         111 LGALVLHYAANSLEE-------HNDDLKTTLAYPVFAPASGM  145 (148)
Q Consensus       111 l~eLI~~y~~~~l~~-------~~~~l~~~L~~Pv~~~~p~~  145 (148)
                      |.+||+||+.+++..       ...++.+.|+.|+.+..|.+
T Consensus        93 l~eLI~~y~~~~~~~~~~~~~~~~~~~~~~L~~P~~~~~~sL  134 (169)
T 2c9w_A           93 VVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKPLYTSAPSL  134 (169)
T ss_dssp             HHHHHHHHHHHTC--------------CCCCCCBCCSSCCCH
T ss_pred             HHHHHHHHHhCcCCCcccccCCCCcCccceecCccccccccH
Confidence            999999999988652       12568899999999977754

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.93  E-value=7.7e-26  Score=152.11  Aligned_cols=89  Identities=34%  Similarity=0.478  Sum_probs=78.6

Q ss_pred             cccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCC-----------------ceEEecC
Q psy8554          45 TWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETER-----------------GFGFAEP  104 (148)
Q Consensus        45 ~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~-----------------g~~~~~~  104 (148)
                      +||| .|+|++||++|++.++|+||||+|  .+|.|+||++.++.++||+|...++                 +.|.++ 
T Consensus         1 ~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~g~~~~~~~l~-   79 (109)
T 1ju5_A            1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIG-   79 (109)
T ss_dssp             CCEETTCCHHHHHHHHTTCCTTEEEEEECSSSTTEEEEEEECSSCEEEEEEECCSSSSCCCCCCSSCCTTCCCCCEEET-
T ss_pred             CccccCCCHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCeEEEEEEEECCCCcccccccccccccccccEEEeC-
Confidence            5999 999999999998889999999999  6899999999999999999988653                 356665 


Q ss_pred             CCCCCCHHHHHHHHhhCCccccCCCccceecccccC
Q psy8554         105 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       105 ~~~F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      ...|+||.+||+||+.++|..      ++|++||+|
T Consensus        80 ~~~F~sl~~LV~~y~~~~l~~------~~L~~Pv~r  109 (109)
T 1ju5_A           80 DQEFDSLPALLEFYKIHYLDT------TTLIEPVSR  109 (109)
T ss_dssp             TEEESSHHHHHHHHHHSCSSS------SCCCEESCC
T ss_pred             CcccCCHHHHHHHHhhCCCCC------eecCccCCC
Confidence            478999999999999998652      589999975

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A

Probab=99.93  E-value=6.1e-26  Score=157.31  Aligned_cols=95  Identities=31%  Similarity=0.421  Sum_probs=83.3

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeC---------------CeeEEEEEEEeCCceEE
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCS---------------GAPKHCLVYETERGFGF  101 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~---------------~~v~H~~I~~~~~g~~~  101 (148)
                      .++.++||| .|+|++||++|++.++|+||||+|  .+|.|+||++..               +.++||+|...++|+++
T Consensus        16 ~~~~~~Wyhg~isR~eAe~lL~~~~~G~FLVR~S~s~~g~y~LSv~~~~~~~~~~~~~g~~~~~~v~H~~I~~~~~g~~l   95 (131)
T 2kno_A           16 SDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKGVKI   95 (131)
T ss_dssp             CCCHHHHBCTTCCHHHHHHHHTTSCTTBEEEEECSSSTTEEEEEEECSCCSSSSSSCCSCHHHHHEEEEEEECCSSCCCE
T ss_pred             ccccCCceecCCCHHHHHHHhcCCCCCeEEEecCCCCCCCEEEEEEeCCCCcccccccccccCCceEEEEEEECCCCCEE
Confidence            456789999 999999999998889999999999  789999999986               37999999988888444


Q ss_pred             e--cCCCCCCCHHHHHHHHhhCCccccCCCccceeccccc
Q psy8554         102 A--EPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVF  139 (148)
Q Consensus       102 ~--~~~~~F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~  139 (148)
                      .  .....|+||.+||+||+.++     .+++|+|+.|+.
T Consensus        96 ~g~~~~~~F~SL~eLV~~y~~~~-----~~L~~~L~~P~~  130 (131)
T 2kno_A           96 KGCPSEPYFGSLSALVSQHSISP-----ISLPCCLRIPSK  130 (131)
T ss_dssp             ETCSSCCCCCSHHHHHHTTTTCC-----SSCSSCCBCSSC
T ss_pred             ecCCCCCccCCHHHHHHHHhhCC-----CCCCeECCCcCC
Confidence            2  24578999999999999997     789999999984

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*

Probab=99.93  E-value=1.5e-25  Score=147.51  Aligned_cols=82  Identities=32%  Similarity=0.467  Sum_probs=74.4

Q ss_pred             cccccc-cCCHHHHHHHhcCCC-CceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHH
Q psy8554          43 EKTWLV-RMSRAQAEALLSGRP-DGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY  118 (148)
Q Consensus        43 ~~~Wyh-~isr~~Ae~lL~~~~-~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y  118 (148)
                      +++||| .|+|++||++|.... +|+||||+|  .+|.|+||++.++.++||+|.+.++|.|++++ ..|+||.|||+||
T Consensus         2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~-~~F~sl~~LV~~y   80 (96)
T 1jyr_A            2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV-VKFNSLNELVDYH   80 (96)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSS-CEESSHHHHHHHT
T ss_pred             CcceeccCCCHHHHHHHHhcCCCCcEEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCCCEEECC-cccCCHHHHHHHH
Confidence            368999 999999999998755 999999999  78999999999999999999987788888875 7899999999999


Q ss_pred             hhCCccc
Q psy8554         119 AANSLEE  125 (148)
Q Consensus       119 ~~~~l~~  125 (148)
                      +.+++..
T Consensus        81 ~~~~l~~   87 (96)
T 1jyr_A           81 RSTSVSR   87 (96)
T ss_dssp             TSSCSCS
T ss_pred             hhCCCCC
Confidence            9998763

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens}

Probab=99.93  E-value=1.4e-25  Score=157.33  Aligned_cols=101  Identities=24%  Similarity=0.255  Sum_probs=85.2

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEec---CCCCCCCHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAE---PFNIYPSLGAL  114 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~---~~~~F~sl~eL  114 (148)
                      ++.++||| .|+|++||++|++.++|+||||+|  .+|.|+||++.++.++||+|.+. +|.|+++   ....|+||.||
T Consensus        21 l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~-~g~~~l~~~~~~~~F~sl~eL   99 (141)
T 2vif_A           21 LAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHS-NGRFSFYEQPDVEGHTSIVDL   99 (141)
T ss_dssp             HHHHTCBCCSCCHHHHHHHTTTSCTTCEEEEECSSTTCSEEEEEEETTEEEEEEEEEE-TTEEEETTCCSCCCBSSHHHH
T ss_pred             hccCCCcccCCCHHHHHHHhcCCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEEE-CCEEEEeecCCCCccCCHHHH
Confidence            47789999 999999999998889999999999  67999999999999999999987 6667766   46899999999


Q ss_pred             HHHHhhCCcc-c---------cCCCccceecccccCCC
Q psy8554         115 VLHYAANSLE-E---------HNDDLKTTLAYPVFAPA  142 (148)
Q Consensus       115 I~~y~~~~l~-~---------~~~~l~~~L~~Pv~~~~  142 (148)
                      |+||+.+++. .         ......+.|++|+.|..
T Consensus       100 I~~y~~~~~~gl~c~l~~~~~~~~~~~v~L~~Pv~R~~  137 (141)
T 2vif_A          100 IEHSIGDSENGAFCYSRSRLPGSATYPVRLTNPVSRFM  137 (141)
T ss_dssp             HHHHHHHHHHTCCEEESCCSTTCCCEECCCCCBCCSSC
T ss_pred             HHHHhhCCCCCcceeccccCCCCCccceEeCCCCcccc
Confidence            9999987641 1         13456788888888643

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.93  E-value=2.6e-25  Score=160.78  Aligned_cols=96  Identities=33%  Similarity=0.518  Sum_probs=86.8

Q ss_pred             CCccccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEe-----CCeeEEEEEEEeCCceEEecCCCCCC
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVC-----SGAPKHCLVYETERGFGFAEPFNIYP  109 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~-----~~~v~H~~I~~~~~g~~~~~~~~~F~  109 (148)
                      .++.++||| .|+|++||++|..  .++|+||||+|  .+|.|+||++.     ++.++||+|.+..+|.|++.....|+
T Consensus        70 ~l~~~~w~~g~isr~~ae~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~v~H~~I~~~~~g~~~~~~~~~F~  149 (175)
T 4d8k_A           70 SLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFP  149 (175)
T ss_dssp             CSTTCTTBCSSCCHHHHHHHHHSTTCCTTCEEEEECSSSTTCEEEEEEEECTTSCEEEEEEEEEECSSSCEESSTTSEES
T ss_pred             cccccceecCcccHHHHHHHHhcCCCCCCEEEEEECCCCCCeEEEEEEeCcccCCCceEEEEEEECCCCCEEECCCCccC
Confidence            356789999 9999999999964  57999999999  89999999998     78999999998888888887778999


Q ss_pred             CHHHHHHHHhhCCccccCCCccceecccccC
Q psy8554         110 SLGALVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       110 sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      ||.+||+||++++     +++.++|+.||++
T Consensus       150 sl~~LV~~y~~~~-----~gl~~~L~~Pc~~  175 (175)
T 4d8k_A          150 GLHELVRHYTNAS-----DGLCTRLSRPCQT  175 (175)
T ss_dssp             SHHHHHHHHHHCC-----TTSSSCCCSBCCC
T ss_pred             CHHHHHHHHhhCC-----CCCcccCCCcCCC
Confidence            9999999999987     8999999999964

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*

Probab=99.92  E-value=4.1e-25  Score=146.42  Aligned_cols=84  Identities=32%  Similarity=0.505  Sum_probs=77.0

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      ++.++||| .|+|++||++|...++|+||||.|  .+|.|+||++.++.++||+|.+.++|.|++++ ..|+||.|||+|
T Consensus         6 l~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~-~~F~sl~~LV~~   84 (100)
T 1r1p_A            6 IEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWT-EKFPSLNKLVDY   84 (100)
T ss_dssp             CTTTTTSCTTCCHHHHHHHHHTSCTTBEEEEECSSSTTCEEEEEECSSSEEEEECEECTTCCEESSS-CEESSHHHHHHH
T ss_pred             eccCCccccCCCHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeC-CEeCCHHHHHHH
Confidence            57789999 999999999998889999999999  68999999999999999999987778788775 789999999999


Q ss_pred             HhhCCccc
Q psy8554         118 YAANSLEE  125 (148)
Q Consensus       118 y~~~~l~~  125 (148)
                      |+.+++..
T Consensus        85 y~~~~l~~   92 (100)
T 1r1p_A           85 YRTTSISK   92 (100)
T ss_dssp             HTTSCSSS
T ss_pred             HHhCCCCC
Confidence            99998765

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A

Probab=99.92  E-value=8.3e-25  Score=166.69  Aligned_cols=98  Identities=27%  Similarity=0.314  Sum_probs=88.4

Q ss_pred             ccccccc-cCCHHHHHHHh--cCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          42 DEKTWLV-RMSRAQAEALL--SGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL--~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      +.++||| .|+|++||++|  .+.++|+||||+|  .+|.|+||++.++.++||+|.+.++|.|++.+...|+||.+||+
T Consensus         4 ~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~   83 (254)
T 2oq1_A            4 AHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELCE   83 (254)
T ss_dssp             TTCTTBCBSCCHHHHHHHHHHTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHHH
T ss_pred             ccCCccCCCCCHHHHHHHHhccCCCCcEEEEEeCCCCCCCEEEEEEECCeEEEEEEEEeCCCCEEeCCCCccCCHHHHHH
Confidence            5579999 99999999999  4579999999999  67999999999999999999987777787766689999999999


Q ss_pred             HHhhCCccccCCCccceecccccCCCCC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFAPASG  144 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~~~p~  144 (148)
                      ||+.++     +++.+.|+.||+++.|.
T Consensus        84 ~y~~~~-----~~l~~~L~~p~~~~~~~  106 (254)
T 2oq1_A           84 FYSRDP-----DGLPCNLRKPCNRPSGL  106 (254)
T ss_dssp             HHHHCC-----TTSSSCCCSBCCCCTTC
T ss_pred             HHHhCC-----CCcccccccccCCCCCC
Confidence            999997     88999999999987664

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A

Probab=99.92  E-value=7.6e-25  Score=166.91  Aligned_cols=96  Identities=27%  Similarity=0.388  Sum_probs=88.2

Q ss_pred             CCccccccc-cCCHHHHHHHhcC--CCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  115 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI  115 (148)
                      .++.++||| .|+|++||++|+.  +++|+||||+| .+|.|+||++.++.++||+|.+..+|.|++.....|+||.+||
T Consensus       155 ~l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV  234 (254)
T 2oq1_A          155 AHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLV  234 (254)
T ss_dssp             GGGGSTTBCSSCCHHHHHHHHHSSCCCTTEEEEEECSSTTEEEEEEEETTEEEEEEEEECTTSCEESTTSCCBSSHHHHH
T ss_pred             ccCCCcccccCCCHHHHHHHHHhcCCCCceEEEEecCCCCCEEEEEEECCeEEEEEEEEcCCCCEEECCCceECCHHHHH
Confidence            457789999 9999999999975  48999999999 9999999999999999999998888888887668999999999


Q ss_pred             HHHhhCCccccCCCccceecccccC
Q psy8554         116 LHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       116 ~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      +||+.++     +++.++|+.||++
T Consensus       235 ~~y~~~~-----~~l~~~L~~p~~r  254 (254)
T 2oq1_A          235 EYLKLKA-----DGLIYCLKEACPN  254 (254)
T ss_dssp             HHHHHCC-----TTSSSCCCSBCCC
T ss_pred             HHHHhCC-----CCCCeeCCccCcC
Confidence            9999997     8899999999975

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}

Probab=99.92  E-value=1.7e-25  Score=152.42  Aligned_cols=91  Identities=20%  Similarity=0.193  Sum_probs=79.8

Q ss_pred             CCccccccc-cCCHHHHHHHhc-CCCCceEEEEeC--CCCCEEEEEEe----CCeeEEEEEEEeCCceEEecCCCCC--C
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLS-GRPDGTFLIRPS--TTGQYALSIVC----SGAPKHCLVYETERGFGFAEPFNIY--P  109 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~-~~~~G~FLvR~s--~~~~~~Lsv~~----~~~v~H~~I~~~~~g~~~~~~~~~F--~  109 (148)
                      .++.++||| .|+|++||++|. ..++|+||||+|  .+|.|+||++.    ++.++||+|.+ ++|.|++.....|  +
T Consensus        17 ~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~-~~g~~~i~~~~~F~~~   95 (118)
T 2el8_A           17 RALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKR-EGPKYVIDVEQPFSCT   95 (118)
T ss_dssp             CCSSSCTTCCCCCHHHHHHHHHHSSTTCSBEEEECCSSSSSEEEEECCCBTTBCCCEEECBCC-BTTBCCBSSSSCCCCS
T ss_pred             cccCCCceecCCCHHHHHHHHhhCCCCcEEEEeeCCCCCCceEEEEEEecCCCCcEEEEEEEE-cCCEEEEeCCCeECCC
Confidence            457789999 999999999995 458999999999  78999999999    88999999988 5666777666789  9


Q ss_pred             CHHHHHHHHhhCCccccCCCccceecc
Q psy8554         110 SLGALVLHYAANSLEEHNDDLKTTLAY  136 (148)
Q Consensus       110 sl~eLI~~y~~~~l~~~~~~l~~~L~~  136 (148)
                      ||.+||+||+.++     .|++++|.+
T Consensus        96 sL~eLV~~y~~~~-----~gl~~~L~~  117 (118)
T 2el8_A           96 SLDAVVNYFVSHT-----KKALVPFLL  117 (118)
T ss_dssp             SHHHHHHHHHHHS-----SSCCCBCCC
T ss_pred             CHHHHHHHHhhCC-----CCCeEeeec
Confidence            9999999999997     788888864

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus}

Probab=99.92  E-value=3.6e-25  Score=156.96  Aligned_cols=100  Identities=24%  Similarity=0.309  Sum_probs=82.6

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCC-------CCCC
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPF-------NIYP  109 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~-------~~F~  109 (148)
                      .++.++||| .|+|++||++|++.++|+||||+|  .+|.|+||++.++.++||+|.+ .+|.|+++..       ..|+
T Consensus        30 ~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~rI~~-~~g~f~l~~~~~~~~~~~~F~  108 (152)
T 2hmh_A           30 KLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQX-EGGSFSLQSDPRSTQPVPRFD  108 (152)
T ss_dssp             HHHHTSSEETTCCHHHHHHHHHTSCTTEEEEEECCSTTCSEEEEEEETTEEEEEEEEC-GGGCBEECBCTTCSSCCCCBS
T ss_pred             hhccCCCcCCCCCHHHHHHHhcCCCCCcEEEEeCCCCCCcEEEEEEcCCceEEEEEEe-cCCEEEEecccccccccCccC
Confidence            357789999 999999999998889999999999  6899999999999999999998 4555555543       7899


Q ss_pred             CHHHHHHHHhhCCc------------cccCCCccceecccccC
Q psy8554         110 SLGALVLHYAANSL------------EEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       110 sl~eLI~~y~~~~l------------~~~~~~l~~~L~~Pv~~  140 (148)
                      ||.+||+||+.++.            .....+..+.|++|+.+
T Consensus       109 SL~eLV~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Pl~~  151 (152)
T 2hmh_A          109 XVLKLVHHYMPPQALPGSTPKRAYYIYSGGEKIPLVLSRPLSS  151 (152)
T ss_dssp             SHHHHHHHTCCCCC---------EEEC----CEEECCCEECCC
T ss_pred             CHHHHHHHHhhCcccccccccccceecCCCcceeEEEcccCcC
Confidence            99999999999873            11224577888888765

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus}

Probab=99.92  E-value=3.1e-25  Score=159.03  Aligned_cols=97  Identities=23%  Similarity=0.242  Sum_probs=86.2

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCC-------CCCC
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPF-------NIYP  109 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~-------~~F~  109 (148)
                      .++.++||| .|+|++||++|++.++|+||||+|  .+|.|+||++.++.++||+|... +|.|+++..       ..|+
T Consensus        19 ~L~~~~WyhG~IsR~eAe~lL~~~~~GtFLVR~S~s~~g~y~LSvr~~~~v~H~rI~~~-~g~f~l~~~~~~~~~~~~F~   97 (164)
T 2bbu_A           19 KLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCE-GGSFSLQSDPRSTQPVPRFD   97 (164)
T ss_dssp             HHHHTSCCCTTSCHHHHHHHHHHSSTTCCEEEECSTTSCCEEEEECCTTCCEEEECEEE-TTEEESSSCCCCCSSCTTCC
T ss_pred             hhccCCccCCCCCHHHHHHHhcCCCCCCEEEEECCCCCCCEEEEEEECCceEEEEEEeC-CCeEEEecCcccccCCCccC
Confidence            357789999 999999999998889999999999  68999999999999999999974 666776653       6899


Q ss_pred             CHHHHHHHHhhCCccccCCCccceecccccC
Q psy8554         110 SLGALVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       110 sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      ||.+||+||+.+++.   .++++.|+.|++.
T Consensus        98 SL~eLV~~Y~~~~~~---~~~~~~l~ep~~~  125 (164)
T 2bbu_A           98 CVLKLVHHYMPPPGT---PSFSLPPTEPSSE  125 (164)
T ss_dssp             HHHHHHHHHSCCCSC---SCCSSSCSSCCSS
T ss_pred             CHHHHHHHHhhCCCC---CCccccccCCCcc
Confidence            999999999999864   6899999999984

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A*

Probab=99.92  E-value=1.2e-24  Score=165.90  Aligned_cols=96  Identities=27%  Similarity=0.455  Sum_probs=88.4

Q ss_pred             CCccccccc-cCCHHHHHHHhcC--CCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  115 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI  115 (148)
                      .++.++||| .|+|++||++|+.  +++|+||||+| .+|.|+||++.++.++||+|.+..+|.|++.+...|+||.+||
T Consensus       154 ~~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV  233 (254)
T 1a81_A          154 AHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLV  233 (254)
T ss_dssp             SGGGSTTEEEECCHHHHHHHHHSSCCCTTCEEEEECSSSSCEEEEEEETTEEEEEEEEECTTSCEECTTSCCBSCHHHHH
T ss_pred             ccccCCccccCCCHHHHHHHHHhcCCCCceEEEEecCCCCCEEEEEEECCEEEEEEEEEcCCCCEEecCCcccCCHHHHH
Confidence            467789999 9999999999975  48999999999 9999999999999999999999888888886668999999999


Q ss_pred             HHHhhCCccccCCCccceecccccC
Q psy8554         116 LHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       116 ~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      +||+.++     +++.++|+.||++
T Consensus       234 ~~y~~~~-----~~l~~~L~~p~~r  253 (254)
T 1a81_A          234 EHYSYKA-----DGLLRVLTVPCQK  253 (254)
T ss_dssp             HHHTTCC-----TTSSSCCCCBCCC
T ss_pred             HHHHHCC-----CCCCeecCCcCCC
Confidence            9999997     7899999999986

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A*

Probab=99.92  E-value=1.8e-24  Score=164.81  Aligned_cols=97  Identities=25%  Similarity=0.306  Sum_probs=87.4

Q ss_pred             ccccccc-cCCHHHHHHHhc--CCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          42 DEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL~--~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      +.++||| .|+|++||++|.  +.++|+||||+|  .+|.|+||++.++.++||+|.+.++|.|++.+...|+||.|||+
T Consensus         3 ~~~~Wy~g~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLv~   82 (254)
T 1a81_A            3 NHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADLCH   82 (254)
T ss_dssp             TSSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHHH
T ss_pred             ccCccccCCCCHHHHHHHHhcCCCCCcEEEEEecCCCCCCEEEEEEECCeeEEEEEEEcCCCCEEeCCCCCcCCHHHHHH
Confidence            4578999 999999999994  468999999999  68999999999999999999987778788766689999999999


Q ss_pred             HHhhCCccccCCCccceecccccCCCC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFAPAS  143 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~~~p  143 (148)
                      ||+.++     +++.+.|+.||.++.|
T Consensus        83 ~y~~~~-----~~l~~~L~~p~~~~~~  104 (254)
T 1a81_A           83 YHSQES-----DGLVCLLKKPFNRPQG  104 (254)
T ss_dssp             HHTTCC-----TTSSSCCCEECCCCSS
T ss_pred             HHHhCC-----CCceECCccccCCCCC
Confidence            999986     8899999999998655

>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*

Probab=99.91  E-value=1.8e-24  Score=164.21  Aligned_cols=102  Identities=31%  Similarity=0.551  Sum_probs=87.0

Q ss_pred             Cccccccc-cC-----CHHHHHHHhc------CCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCc---eEEec
Q psy8554          41 HDEKTWLV-RM-----SRAQAEALLS------GRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERG---FGFAE  103 (148)
Q Consensus        41 ~~~~~Wyh-~i-----sr~~Ae~lL~------~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g---~~~~~  103 (148)
                      |.+++||| .|     +|++||++|+      +.++|+||||+|  .+|.|+||++.++.++||+|...+++   .|++.
T Consensus         1 H~~e~WfhG~i~~~~~sR~~AE~lL~~~~~~~~~~dG~FLVR~S~s~~G~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~   80 (246)
T 4fbn_A            1 HSNEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLT   80 (246)
T ss_dssp             --CCTTBCCCCSCC-CHHHHHHHHHHHHHHHHTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEECGGGCCEEEEE
T ss_pred             CCCCCCcCCccccccCCHHHHHHHHHHhhhccCCCCCEEEEEcCCCCCCCEEEEEEECCEEEEEEEEEECCCCceeEEec
Confidence            35679999 99     7999999995      578999999999  88999999999999999999887654   46666


Q ss_pred             CCCCCCCHHHHHHHHhhCCccccCCCccceecccccCCCCC
Q psy8554         104 PFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG  144 (148)
Q Consensus       104 ~~~~F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~p~  144 (148)
                      ....|+||.|||+||++++|..  .++...|..|+++..+.
T Consensus        81 ~~~~F~sl~~LV~~y~~~~l~~--~~~~~~l~~p~p~~~~~  119 (246)
T 4fbn_A           81 DNLVFDSLYDLITHYQQVPLRC--NEFEMRLSEPVPQTNAH  119 (246)
T ss_dssp             TTEEESSHHHHHHHHHHSCEEC--SSCEECCCCBCCCSCGG
T ss_pred             CCcccCCHHHHHHhHhhccccc--ccccccccccccccCCc
Confidence            6678999999999999999876  67888888888776543

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.91  E-value=2.6e-24  Score=157.09  Aligned_cols=100  Identities=23%  Similarity=0.267  Sum_probs=83.9

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCC----CCCCCHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPF----NIYPSLG  112 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~----~~F~sl~  112 (148)
                      .++.++||| .|+|++||++|.+.++|+||||+|  ..+.|+||++.+++++||+|... +|.|++...    ..|+||.
T Consensus        30 ~l~~~~WYhG~isR~eAE~lL~~~~dGtFLVR~S~~~~~~lsLSvr~~~~v~H~rI~~~-~g~f~l~~~~~~~~~F~SL~  108 (187)
T 2izv_A           30 QINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQW-NHNFSFDAHDPCVFHSPDIT  108 (187)
T ss_dssp             HHHHCTTEEEECCHHHHHHHHTTCCTTEEEEEECSSTTCSEEEEEEETTEEEEEECEEE-TTEEESCTTCTTSCCBSSHH
T ss_pred             hcccCCccccCCCHHHHHHHhcCCCCCcEEEEECCCCCceEEEEEeeCCeEEEEEEEEC-CCEEEEeccCCCccccCCHH
Confidence            457789999 999999999998889999999999  56678999999999999999987 455555432    3799999


Q ss_pred             HHHHHHhhCCccccCCCccceecccccCCCC
Q psy8554         113 ALVLHYAANSLEEHNDDLKTTLAYPVFAPAS  143 (148)
Q Consensus       113 eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~p  143 (148)
                      +||+||+.+++..   ...+.|+.||.+..|
T Consensus       109 eLV~hY~~~~~~~---~~~~~L~~Pv~r~~p  136 (187)
T 2izv_A          109 GLLEHYKDPSACM---FFEPLLSTPLIRTFP  136 (187)
T ss_dssp             HHHHHTCCGGGCC---TTSCCCCEECCCCSC
T ss_pred             HHHHHHHhccccc---ccccccccccccccc
Confidence            9999999987432   125799999998766

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=99.91  E-value=3.6e-24  Score=170.69  Aligned_cols=103  Identities=27%  Similarity=0.418  Sum_probs=91.5

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--C-CCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--T-TGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  115 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~-~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI  115 (148)
                      .++.++||| .|+|++||.+|.+.++|+||||+|  . +|.|+||++.++.++||+|...+ |.|+++....|+||.+||
T Consensus         6 sL~~~~WYhG~IsR~eAE~lL~~~~dG~FLVR~S~s~~~g~y~LSvr~~~~v~H~rI~~~~-g~y~l~~~~~F~SL~eLV   84 (373)
T 3hhm_B            6 SLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRD-GKYGFSDPLTFSSVVELI   84 (373)
T ss_dssp             GGGGCTTEEESCCHHHHHHHTTTCCTTEEEEEECSCC--CCEEEEEEETTEEEEEEECCSS-SCBCSSSSCCBSSSHHHH
T ss_pred             CcccCCccCCCCCHHHHHHHhcCCCCCCEEEeccCCCCCCCEEEEEEECCeeEEEEEEecC-CeEEeCCCCCcCCHHHHH
Confidence            457789999 999999999999889999999999  4 89999999999999999998764 556666657899999999


Q ss_pred             HHHhhCCccccCCCccceecccccCCCC
Q psy8554         116 LHYAANSLEEHNDDLKTTLAYPVFAPAS  143 (148)
Q Consensus       116 ~~y~~~~l~~~~~~l~~~L~~Pv~~~~p  143 (148)
                      +||+.++++.+++|++++|++||+++..
T Consensus        85 ~~Y~~~~l~~~~~gl~~~L~~Pv~r~~q  112 (373)
T 3hhm_B           85 NHYRNESLAQYNPKLDVKLLYPVSKYQQ  112 (373)
T ss_dssp             HHHHHSCGGGSCTTCCCCCCEECCSCCC
T ss_pred             HHHhhCCccccCCCCCcccCCCCCCcch
Confidence            9999999988889999999999998544

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.89  E-value=4.4e-23  Score=173.51  Aligned_cols=96  Identities=27%  Similarity=0.335  Sum_probs=87.4

Q ss_pred             ccccccc-cCCHHHHHHHh--cCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          42 DEKTWLV-RMSRAQAEALL--SGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL--~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      ...+||| .|+|++||++|  .+.++|+||||+|  .+|.|+||++.++.++||+|.+.++|.|++.....|.||.+||+
T Consensus         6 ~~~~W~~g~i~r~~ae~~L~~~~~~~G~fLvR~s~~~~g~~~ls~~~~~~~~h~~i~~~~~g~~~~~~~~~f~sl~~Lv~   85 (613)
T 2ozo_A            6 AHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELCE   85 (613)
T ss_dssp             SSCTTBCBSCCHHHHHHHHHTTTCCTTEEEEEECTTBTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHHH
T ss_pred             CCCCCcCccCCHHHHHHHHhccCCCCCeEEEEecCCCCCCEEEEEEECCeEEEEEEEECCCCcEEECCCCCcCCHHHHHH
Confidence            4468999 99999999999  4568999999999  78999999999999999999988888888877788999999999


Q ss_pred             HHhhCCccccCCCccceecccccCCC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFAPA  142 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~~~  142 (148)
                      ||+.++     +|+++.|+.||+++.
T Consensus        86 ~y~~~~-----~~l~~~L~~p~~~~~  106 (613)
T 2ozo_A           86 FYSRDP-----DGLPCNLRKPCNRPS  106 (613)
T ss_dssp             HHTSCC-----TTSSSCCCSBCCCCT
T ss_pred             HHhhCC-----CCCCccCCccCCCCC
Confidence            999997     889999999999863

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.89  E-value=3.1e-23  Score=175.18  Aligned_cols=98  Identities=23%  Similarity=0.274  Sum_probs=89.7

Q ss_pred             Cccccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  115 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI  115 (148)
                      ++.++||| .|+|++||++|..  .++|+||||+|  .+|.|+||++.++.++||+|.+.++|.|++.....|+||.+||
T Consensus        10 l~~~~Wy~g~isr~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~v~h~~i~~~~~g~~~~~~~~~f~sl~~Lv   89 (635)
T 4fl3_A           10 ANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADLC   89 (635)
T ss_dssp             CTTCTTBCBSCCHHHHHHHHHHTTCCTTEEEEEECTTSSSCEEEEEEETTEEEEEEEEECTTSCEESTTCCCBSSHHHHH
T ss_pred             hhcCCccCCCCCHHHHHHHHhcCCCCCceEEEeecccCCCCEEEEEEeCCEEEeEEEEEcCCCCEEeCCCCccCCHHHHH
Confidence            46789999 9999999999954  67999999999  7999999999999999999999888888887778999999999


Q ss_pred             HHHhhCCccccCCCccceecccccCCCC
Q psy8554         116 LHYAANSLEEHNDDLKTTLAYPVFAPAS  143 (148)
Q Consensus       116 ~~y~~~~l~~~~~~l~~~L~~Pv~~~~p  143 (148)
                      +||++++     +|+.++|++||.++.|
T Consensus        90 ~~y~~~~-----~~l~~~L~~p~~~~~~  112 (635)
T 4fl3_A           90 HYHSQES-----DGLVCLLKKPFNRPQG  112 (635)
T ss_dssp             HHHTTCC-----TTSSSCCCEECCCCTT
T ss_pred             HHHhhCC-----CCCeeccCCcCCCccC
Confidence            9999997     8999999999998654

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.89  E-value=4.5e-23  Score=174.22  Aligned_cols=98  Identities=27%  Similarity=0.437  Sum_probs=90.1

Q ss_pred             CCCccccccc-cCCHHHHHHHhcC--CCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHH
Q psy8554          39 PHHDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGAL  114 (148)
Q Consensus        39 ~~~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eL  114 (148)
                      ..++.++||| .|+|++||++|..  +++|+||||+| .+|.|+||++.++.++||+|.+..+|.|+++....|+||.+|
T Consensus       161 ~~~~~~~Wy~g~isr~~ae~~L~~~~~~~G~FLvR~s~~~g~y~lsv~~~~~v~h~~i~~~~~g~~~~~~~~~F~sl~~L  240 (635)
T 4fl3_A          161 TAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQL  240 (635)
T ss_dssp             SCGGGSTTBCCSCCHHHHHHHHHSSSCCTTCEEEEESSSSSCEEEEEEETTEEEEEEEEECTTSCEESTTCCCBSSHHHH
T ss_pred             cccccCCceeccCCHHHHHHHHHcCCCCCceEEEEecCCCCCEEEEEEECCEEEEEEEEECCCCCEEeCCCCccCCHHHH
Confidence            4678889999 9999999999965  56999999999 999999999999999999999888899998877899999999


Q ss_pred             HHHHhhCCccccCCCccceecccccCC
Q psy8554         115 VLHYAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       115 I~~y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      |+||+.++     +|+.++|++||++.
T Consensus       241 v~~y~~~~-----~~l~~~L~~p~~~~  262 (635)
T 4fl3_A          241 VEHYSYKA-----DGLLRVLTVPCQKI  262 (635)
T ss_dssp             HHHHTTCC-----TTSSSCCCSBCCC-
T ss_pred             HHHhhhCC-----CCCccccCccCcCc
Confidence            99999997     89999999999874

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.89  E-value=6.5e-24  Score=159.61  Aligned_cols=96  Identities=31%  Similarity=0.455  Sum_probs=83.8

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCC-----------------ce
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETER-----------------GF   99 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~-----------------g~   99 (148)
                      .++.++||| .|+|++||++|++.++|+||||+|  .+|.|+||++.++.++||+|.+.++                 +.
T Consensus         9 ~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~g~~~~~   88 (230)
T 2dvj_A            9 SEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSR   88 (230)
T ss_dssp             SSSSSSSCCSSCCTTHHHHHHTTSSSSCBEEECCSSCTTSCEEECCCSSSCCCEECBCCCSCCSSSSSSSSTTTSCCCCC
T ss_pred             cccCCCcccCCCCHHHHHHHhcCCCCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEeCCCCcccccccccccccccceE
Confidence            467789999 999999999998889999999999  7899999999999999999987653                 35


Q ss_pred             EEecCCCCCCCHHHHHHHHhhCCccccCCCccceecccccCCC
Q psy8554         100 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA  142 (148)
Q Consensus       100 ~~~~~~~~F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~  142 (148)
                      |+++ ...|+||.+||+||+.+.+.      .+.|++||+++.
T Consensus        89 ~~~~-~~~F~sl~~LV~~y~~~~l~------~~~L~~Pv~~~~  124 (230)
T 2dvj_A           89 LRIG-DQEFDSLPALLEFYKIHYLD------TTTLIEPVSRSR  124 (230)
T ss_dssp             EESS-SCEESSHHHHHTTSTTTCSS------SSCCCCBCCSCC
T ss_pred             EEeC-CceeCCHHHHHHHHhhCccc------cccccccccccc
Confidence            6665 47899999999999998743      478999998765

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.88  E-value=7.7e-23  Score=147.61  Aligned_cols=96  Identities=26%  Similarity=0.359  Sum_probs=82.5

Q ss_pred             CCCccccccc-cCCHHHHHHHhcC--CCCceEEEEeC-CCCCEEEEEEeCCe---eEEEEEEE---eCC----ceEEecC
Q psy8554          39 PHHDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS-TTGQYALSIVCSGA---PKHCLVYE---TER----GFGFAEP  104 (148)
Q Consensus        39 ~~~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s-~~~~~~Lsv~~~~~---v~H~~I~~---~~~----g~~~~~~  104 (148)
                      ..++.++||| .|+|++||++|+.  .++|+||||+| .+|.|+||++.++.   ++||+|.+   ..+    |.|+++ 
T Consensus         7 ~~l~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~~~~~~~-   85 (174)
T 3qwx_X            7 DPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIA-   85 (174)
T ss_dssp             CGGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEECSSTTCEEEEEECCSSSSCEEEEEEEECCCCTTSSSCCCEEET-
T ss_pred             CccccCCCccCCCCHHHHHHHHhccCCCCCeEEEEecCCCCCEEEEEEECCCCCceEEEEEEeccCCCCCcccceEEEC-
Confidence            4567889999 9999999999965  56899999999 99999999999998   99999988   434    467776 


Q ss_pred             CCCCCCHHHHHHHHhhCCccccCCCccceecccccCC
Q psy8554         105 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       105 ~~~F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      ...|+|+.+||+||+.+++      +.+.|..||+++
T Consensus        86 ~~~F~sl~eLv~~y~~~~~------~~~~L~~P~~~p  116 (174)
T 3qwx_X           86 NQSFPDIPALLNHFKMRVL------TEASLLAAYKKP  116 (174)
T ss_dssp             TEEESSHHHHHHHTTSSCS------SSCCCCEECCCC
T ss_pred             CeecCcHHHHhhhhhcCcc------cccccccccccc
Confidence            5789999999999999863      457899999775

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.88  E-value=1.9e-23  Score=162.81  Aligned_cols=99  Identities=30%  Similarity=0.469  Sum_probs=85.5

Q ss_pred             CCCCCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEe-----------------C
Q psy8554          37 DLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYET-----------------E   96 (148)
Q Consensus        37 ~~~~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~-----------------~   96 (148)
                      .+..++.++||| .|+|++||++|++.++|+||||+|  .+|.|+||++.++.++||+|.+.                 .
T Consensus         4 ~~~~~~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~   83 (304)
T 2eyz_A            4 NFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVS   83 (304)
T ss_dssp             SCCCSSSSSSCCCCCCSSHHHHTTTTCCSSCEECCSCCSSSSCCEEEECSSSSCEEEECCCCSSCCSSCCCCCCCSSSSS
T ss_pred             ccccccCCCCccCCCCHHHHHHHhcCCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEeeccccccccccccccccccC
Confidence            344567889999 999999999998889999999999  68999999999999999999882                 4


Q ss_pred             CceEEecCCCCCCCHHHHHHHHhhCCccccCCCccceecccccCCC
Q psy8554          97 RGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA  142 (148)
Q Consensus        97 ~g~~~~~~~~~F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~  142 (148)
                      +|.|+++. ..|+||.+||+||+++.+.      .++|++||+++.
T Consensus        84 ~~~~~~~~-~~F~sl~~LV~~y~~~~l~------~~~L~~P~~~~~  122 (304)
T 2eyz_A           84 PSRLRIGD-QEFDSLPALLEFYKIHYLD------TTTLIEPVSRSR  122 (304)
T ss_dssp             CCCCCBTT-BCCSCHHHHHTTTTTSCCS------SSSSCCBCCSCS
T ss_pred             CCeEEeCC-cEECCHHHHHHHhhhCccc------cceecccccccc
Confidence            56666654 7899999999999998742      588999998765

>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*

Probab=99.88  E-value=1.7e-22  Score=153.30  Aligned_cols=94  Identities=32%  Similarity=0.485  Sum_probs=81.9

Q ss_pred             CCccccccc-cCCHHHHHHHhcC-CCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      .++.++||| .|+|++||++|.+ ..+|+||||.| .+|.|+||++.++.++||+|... ++.|+.+. ..|+||.+||+
T Consensus       118 ~~~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~s~~~g~y~Lsv~~~~~v~H~~I~~~-~~~~~~~~-~~F~sL~~Lv~  195 (246)
T 4fbn_A          118 AHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQE-GQTVMLGN-SEFDSLVDLIS  195 (246)
T ss_dssp             GGGGSTTEESSCCHHHHHHHHHTSCCTTEEEEEECSSTTEEEEEEEETTEEEEEEEEEE-TTEEEETT-EEESCHHHHHH
T ss_pred             CcccCCeeecCccHHHHHHHHhhCCCCCeEEEEecCCCCCEEEEEEeCCCeEEEEEEeC-CCEEEeCC-CccCCHHHHHH
Confidence            356779999 9999999999966 46899999999 89999999999999999999875 44555554 67999999999


Q ss_pred             HHhhCCccccCCCccceecccccC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      ||++++     .++.+.|++||.+
T Consensus       196 ~y~~~p-----~~~~~~L~~Pv~~  214 (246)
T 4fbn_A          196 YYEKHP-----LYRKMKLRYPINE  214 (246)
T ss_dssp             HHHHSC-----SBTTBCCCEECSH
T ss_pred             HhCcCC-----CCCCcCCCCcCCC
Confidence            999998     5678999999975

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.87  E-value=4.7e-22  Score=167.31  Aligned_cols=98  Identities=27%  Similarity=0.382  Sum_probs=89.0

Q ss_pred             CCCccccccc-cCCHHHHHHHhc--CCCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHH
Q psy8554          39 PHHDEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGAL  114 (148)
Q Consensus        39 ~~~~~~~Wyh-~isr~~Ae~lL~--~~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eL  114 (148)
                      ..++.++||| .|+|++||++|.  ++++|+||||+| .+|.|+||++.++.++||+|.+..+|.|++.....|+||.||
T Consensus       156 ~~~~~~~wyhg~i~r~~ae~~L~~~~~~~G~FLvR~s~~~~~~~lsv~~~~~v~h~~I~~~~~g~~~~~~~~~F~sl~~L  235 (613)
T 2ozo_A          156 TAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQL  235 (613)
T ss_dssp             SCTTTSTTBCTTCCHHHHHHHHSSSCCCTTCEEEEECSSTTEEEEEEEETTEEEEEEEEECTTCCEECTTSCEESSHHHH
T ss_pred             cccccCCccccCCCHHHHHHHHhhcCCCCceEEEEecCCCCCEEEEEEECCeEEEEEEEECCCCCEEECCCCCcCCHHHH
Confidence            4568889999 999999999997  468999999999 899999999999999999999888888888766889999999


Q ss_pred             HHHHhhCCccccCCCccceecccccCC
Q psy8554         115 VLHYAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       115 I~~y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      |+||+.++     +|++++|+.||+..
T Consensus       236 v~~y~~~~-----~~l~~~L~~pC~~~  257 (613)
T 2ozo_A          236 VEYLKLKA-----DGLIYCLKEACPNS  257 (613)
T ss_dssp             HHHHHHCC-----TTCSSCCCSBCCC-
T ss_pred             HHHHhhCC-----CCceeccccccccc
Confidence            99999987     89999999999763

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=99.78  E-value=1e-23  Score=164.27  Aligned_cols=95  Identities=27%  Similarity=0.371  Sum_probs=85.6

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      .++.++||| .|+|++||++|+..++|+||||.|  .+|.|+||++.++.++||+|.+..+|.|+++. ..|.||.+||+
T Consensus         8 ~~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~-~~F~sl~~Lv~   86 (303)
T 2lqn_A            8 SSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGD-QEFDHLPALLE   86 (303)
Confidence            467789999 999999999998789999999999  88999999999999999999987777777775 78999999999


Q ss_pred             HHhhCCccccCCCccceecccccCC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      ||+++++      +++.|+.||+++
T Consensus        87 ~y~~~~~------~~~~L~~P~~r~  105 (303)
T 2lqn_A           87 FYKIHYL------DTTTLIEPAPRY  105 (303)
Confidence            9999874      468999999884

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.85  E-value=2.5e-21  Score=151.00  Aligned_cols=97  Identities=25%  Similarity=0.356  Sum_probs=84.0

Q ss_pred             CCCccccccc-cCCHHHHHHHhcC--CCCceEEEEeC-CCCCEEEEEEeCCe---eEEEEEEE-eCC------ceEEecC
Q psy8554          39 PHHDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS-TTGQYALSIVCSGA---PKHCLVYE-TER------GFGFAEP  104 (148)
Q Consensus        39 ~~~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s-~~~~~~Lsv~~~~~---v~H~~I~~-~~~------g~~~~~~  104 (148)
                      ..++.++||| .|+|++||++|..  +++|+||||+| .+|.|+||++.+++   ++||+|.+ .++      |.|+++.
T Consensus        36 ~~l~~~~Wyhg~i~R~~Ae~lL~~~~~~~G~FLVR~S~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~g~~~~~~  115 (308)
T 3qwy_A           36 DPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIAN  115 (308)
T ss_dssp             CGGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEECSSTTCEEEEEECCSSSSCEEEEEEEECCCCTTTTCCCCEEETT
T ss_pred             CcccccccccCCCCHHHHHHHHhccCCCCceEEEEccCCCCCEEEEEEeCCCCCceEEEEEeeccCCCcCcccceEEEeC
Confidence            3468889999 9999999999965  67899999999 99999999999998   99999988 544      7788875


Q ss_pred             CCCCCCHHHHHHHHhhCCccccCCCccceecccccCCC
Q psy8554         105 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA  142 (148)
Q Consensus       105 ~~~F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~  142 (148)
                       ..|+|+.+||+||+.+.+      +.+.|..|++++.
T Consensus       116 -~~F~Sl~eLv~~y~~~~~------~~~~L~~P~~~p~  146 (308)
T 3qwy_A          116 -QSFPDIPALLNHFKMRVL------TEASLLAAYKKPI  146 (308)
T ss_dssp             -EEESSHHHHHHHHHHSCS------SSCCCCEECCCCC
T ss_pred             -eeeCCHHHHHHHHhhccc------ccchhcccccccc
Confidence             789999999999999874      3567999987753

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*

Probab=99.84  E-value=7.8e-21  Score=157.79  Aligned_cols=99  Identities=26%  Similarity=0.376  Sum_probs=85.1

Q ss_pred             ccccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHHh
Q psy8554          44 KTWLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYA  119 (148)
Q Consensus        44 ~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y~  119 (148)
                      ++||| .|+|++||++|.. .++|+||||+|  .+|.|+||++.++.++||+|.. .+|+|.+.+...|+||.+||+||+
T Consensus         2 ~~Wyhg~i~r~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~-~~~~~~~~~~~~F~sl~~Lv~~y~   80 (532)
T 2b3o_A            2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQN-SGDFYDLYGGEKFATLTELVEYYT   80 (532)
T ss_dssp             CTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSSSEEEEEEEETTEEEEEEEEC-SSSCEEETTSCEESCHHHHHHHHH
T ss_pred             CCceeCCCCHHHHHHHHHhcCCCCCEEEecCCCCCCceEEEEEECCEEEEEEEEe-cCCEEEECCCcccCCHHHHHHHHH
Confidence            58999 9999999999965 38999999999  7899999999999999999986 455665655578999999999999


Q ss_pred             hCCcccc-CCCccceecccccCCCC
Q psy8554         120 ANSLEEH-NDDLKTTLAYPVFAPAS  143 (148)
Q Consensus       120 ~~~l~~~-~~~l~~~L~~Pv~~~~p  143 (148)
                      .++++.. .+|+.+.|+.||+++.|
T Consensus        81 ~~~~~l~~~~g~~~~L~~P~~~~~p  105 (532)
T 2b3o_A           81 QQQGVLQDRDGTIIHLKYPLNCSDP  105 (532)
T ss_dssp             TTCSCBCCSSSCCBCCCEECCCCCG
T ss_pred             hcccccccccCchhhcccccccccc
Confidence            9884432 47899999999998766

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1

Probab=99.84  E-value=1.3e-20  Score=156.24  Aligned_cols=103  Identities=25%  Similarity=0.363  Sum_probs=86.9

Q ss_pred             ccccccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          42 DEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      +.++||| .|+|++||++|.. .++|+||||+|  .+|.|+||++.++.++||+|... +|.|.+.+...|+||.|||+|
T Consensus         2 ~~~~Wyhg~i~r~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~-~~~~~l~~~~~F~sl~eLv~~   80 (525)
T 2shp_A            2 KSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNT-GDYYDLYGGEKFATLAELVQY   80 (525)
T ss_dssp             CCSTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEECS-SSCEEETTSCEESSHHHHHHH
T ss_pred             CCCCcccCCCCHHHHHHHHHhCCCCCcEEeeccCCCCCcEEEEEEECCEEEEEEEEec-CCeEEECCCCeECCHHHHHHH
Confidence            5679999 9999999999964 48999999999  78999999999999999999864 455555445789999999999


Q ss_pred             HhhCCccc-cCCCccceecccccCCCCCC
Q psy8554         118 YAANSLEE-HNDDLKTTLAYPVFAPASGM  145 (148)
Q Consensus       118 y~~~~l~~-~~~~l~~~L~~Pv~~~~p~~  145 (148)
                      |+.+++.. ..+|+.+.|++|++++.|..
T Consensus        81 y~~~~~~l~~~~g~~i~L~~Pv~~~dp~~  109 (525)
T 2shp_A           81 YMEHHGQLKEKNGDVIELKYPLNCADPTS  109 (525)
T ss_dssp             HHTCTTCSBSSSSCBCCCCEECCCCCCTT
T ss_pred             HHhCCcccccccccccccccccccccccc
Confidence            99988543 23678899999999877643

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}

Probab=99.82  E-value=3.2e-20  Score=155.93  Aligned_cols=100  Identities=26%  Similarity=0.371  Sum_probs=85.0

Q ss_pred             ccccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHHh
Q psy8554          44 KTWLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYA  119 (148)
Q Consensus        44 ~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y~  119 (148)
                      ++||| .|+|++||++|.. ..+|+||||+|  .+|.|+||++.++.++||+|...+ |.|++.+...|+||.|||+||+
T Consensus         2 ~~Wy~g~isr~~Ae~lL~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~~~~~~~~~~F~sl~eLv~~y~   80 (595)
T 3ps5_A            2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSG-DFYDLYGGEKFATLTELVEYYT   80 (595)
T ss_dssp             CSCCCSSCCHHHHHHHHHHHCCTTCEEEEECSSSTTSEEEEEEETTEEEEEEEEECS-SCEESSSSCCBSSHHHHHHHHH
T ss_pred             CCccCCCCCHHHHHHHHhhCCCCCEEEEeecCCCCCceEEEEEECCEEEEEEEEeCC-CcEEEecCccccchhhhhhhhc
Confidence            58999 9999999999965 48999999999  889999999999999999998654 4454444578999999999999


Q ss_pred             hCCccc-cCCCccceecccccCCCCC
Q psy8554         120 ANSLEE-HNDDLKTTLAYPVFAPASG  144 (148)
Q Consensus       120 ~~~l~~-~~~~l~~~L~~Pv~~~~p~  144 (148)
                      .+++.. ..+|+.+.|.+|+.+..|.
T Consensus        81 ~~~~~l~~~~g~~i~L~~P~~~~~p~  106 (595)
T 3ps5_A           81 QQQGVLQDRDGTIIHLKYPLNCSDPT  106 (595)
T ss_dssp             TTSSCCBCSSCCBCCCCCBCCCCCSC
T ss_pred             cCcccccccccccccccccccccccc
Confidence            987554 2468899999999876654

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=2.3e-20  Score=128.38  Aligned_cols=89  Identities=21%  Similarity=0.285  Sum_probs=73.7

Q ss_pred             Cccccccc-cCCHHHHHHHhcCC-CCceEEEEeC-CCCCEEEEEEeC--CeeEEEEEEEeCCceEEecCCCCCCCHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPS-TTGQYALSIVCS--GAPKHCLVYETERGFGFAEPFNIYPSLGALV  115 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~-~~G~FLvR~s-~~~~~~Lsv~~~--~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI  115 (148)
                      ++.++||| .+.        .+. .+|+||||+| .+|.|+||++.+  +.|+||+|.+.++ .|++.....|+||.|||
T Consensus        27 l~~~~Wyh~Ll~--------~g~~~dG~FLVR~S~~~g~y~LSv~~~~~~~vkH~rI~~~~~-~~~i~~~~~F~sL~eLV   97 (126)
T 2cr4_A           27 CEVERLFKATSP--------RGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRIFEKDS-KFYLEGEVLFVSVGSMV   97 (126)
T ss_dssp             HHHHHHHHHHST--------TSCCCTTCEEEEECSSTTCEEEEEEETTTTEECCEECEEETT-EEESSSSCEESSHHHHH
T ss_pred             cccCCCHHHHhh--------CCCCCCCeEEEEecCCCCCEEEEEEeCCCCCEEEEEEEECCC-eEEEcCCccCCCHHHHH
Confidence            56789999 322        223 4699999999 999999999999  9999999998776 56666557899999999


Q ss_pred             HHHhhCCccccCCCccceecccccCC
Q psy8554         116 LHYAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       116 ~~y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      +||++++++..   ..+.|+.|+.++
T Consensus        98 ~hY~~~~l~~~---~~~~L~~P~~~~  120 (126)
T 2cr4_A           98 EHYHTHVLPSH---QSLLLRHPYGYT  120 (126)
T ss_dssp             HHHTTSCCSSS---SSCCCCSBSSCC
T ss_pred             HHHhhCCcCCC---CCEEeCCcCCCC
Confidence            99999998863   467899999863

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}

Probab=99.81  E-value=6.1e-20  Score=154.27  Aligned_cols=97  Identities=30%  Similarity=0.407  Sum_probs=84.7

Q ss_pred             ccccccc-cCCHHHHHHHhc-CCCCceEEEEeC--CCCCEEEEEEeCC---------eeEEEEEEEeCCceEEecCCCCC
Q psy8554          42 DEKTWLV-RMSRAQAEALLS-GRPDGTFLIRPS--TTGQYALSIVCSG---------APKHCLVYETERGFGFAEPFNIY  108 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL~-~~~~G~FLvR~s--~~~~~~Lsv~~~~---------~v~H~~I~~~~~g~~~~~~~~~F  108 (148)
                      ..++||| .|+|++||++|. ...+|+||||+|  .+|.|+||++.++         .++||+|... +|.|+++....|
T Consensus       106 ~~~~Wy~g~~~r~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~~~~~v~H~~I~~~-~~~~~~~~~~~F  184 (595)
T 3ps5_A          106 TSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCE-GGRYTVGGLETF  184 (595)
T ss_dssp             CCSTTEEESCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEEEEESSSTTSCEEEEEEEEBCG-GGCBBSSSSCCB
T ss_pred             cccccccccCCHHHHHHHHhccCCCceEEEEecCCCCCcEEEEEEECCccccccCCCceEEEEEEEe-CCEEEEcCCcCC
Confidence            4568999 999999999994 467899999999  8999999999987         8999999864 566666666789


Q ss_pred             CCHHHHHHHHhhCCccccCCCccceecccccC
Q psy8554         109 PSLGALVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       109 ~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      +||.+||+||+++++.. ..|+.+.|++||..
T Consensus       185 ~sl~~LV~~y~~~~l~~-~~g~~~~L~~p~~~  215 (595)
T 3ps5_A          185 DSLTDLVEHFKKTGIEE-ASGAFVYLRQPYYA  215 (595)
T ss_dssp             SSHHHHHHHHHHSCBCC-TTSCCBCCCEECCC
T ss_pred             CCHHHHHHHHhcCCccc-cCCcEEEeeccccc
Confidence            99999999999999887 47899999999964

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1

Probab=99.80  E-value=4e-19  Score=147.32  Aligned_cols=98  Identities=26%  Similarity=0.353  Sum_probs=85.9

Q ss_pred             ccccccc-cCCHHHHHHHhcCC-CCceEEEEeC--CCCCEEEEEEeCC----------eeEEEEEEEeCCceEEecCCCC
Q psy8554          42 DEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPS--TTGQYALSIVCSG----------APKHCLVYETERGFGFAEPFNI  107 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL~~~-~~G~FLvR~s--~~~~~~Lsv~~~~----------~v~H~~I~~~~~g~~~~~~~~~  107 (148)
                      +.++||| .|+|++||++|... ++|+||||+|  .+|.|+||++.++          .++||+|... +|.|+++....
T Consensus       108 ~~~~w~~g~~~r~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~~~~~~v~H~~I~~~-~g~~~l~~~~~  186 (525)
T 2shp_A          108 TSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQ-ELKYDVGGGER  186 (525)
T ss_dssp             TTCTTBCCSCCHHHHHHHHHHTCCTTEEEEEECSSSTTCEEEEEEECC-----CCCCCEEEEEEEEEE-TTEEESSSSCC
T ss_pred             ccceeecccCCHHHHHHHHhccCCCceEEEEecCCCCCCEEEEEEECCccccccccccceEEEEEEec-CCeEEECCCce
Confidence            4568999 99999999999654 8999999999  7899999999987          8999999987 56677765678


Q ss_pred             CCCHHHHHHHHhhCCccccCCCccceecccccCC
Q psy8554         108 YPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       108 F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      |.||.+||+||+.+++.. ..|+.+.|++||.+.
T Consensus       187 F~sL~eLV~~y~~~~l~~-~~g~~~~L~~P~~~t  219 (525)
T 2shp_A          187 FDSLTDLVEHYKKNPMVE-TLGTVLQLKQPLNTT  219 (525)
T ss_dssp             BSSHHHHHHHHHHSCCBC-TTSCBCCCCEECCCS
T ss_pred             eCcHHHHHHhhhccCccc-cCCeEEEeecccccc
Confidence            999999999999999876 468899999999864

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.79  E-value=5e-19  Score=145.27  Aligned_cols=97  Identities=31%  Similarity=0.457  Sum_probs=87.8

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      .++.++||| .|+|++||.+|+...+|+||||.|  .+|.|+||++.++.++||+|...++|.++......|+++.+||+
T Consensus       101 ~le~~~wyhg~i~r~~ae~ll~~~~~G~fLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~g~~~~~~~~~F~sl~eLv~  180 (495)
T 1opk_A          101 SLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVH  180 (495)
T ss_dssp             SGGGSTTEEEECCHHHHHHHGGGCCTTEEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSTTSCBSSHHHHHH
T ss_pred             cccchhhhccCCCHHHHHHHhhCCCCceEEEEeCCCCCCceEEEEeeCCeEEEEEEEecCCCceEeccCccchhHHHHhh
Confidence            467789999 999999999998788999999999  88999999999999999999988888888877778999999999


Q ss_pred             HHhhCCccccCCCccceecccccCC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      ||....     +++.+.|..|+++.
T Consensus       181 ~~~~~~-----~g~~~~l~~~~~~~  200 (495)
T 1opk_A          181 HHSTVA-----DGLITTLHYPAPKR  200 (495)
T ss_dssp             HHTTCC-----TTSSSCCCEECCCC
T ss_pred             hhcccc-----cccchhcccccccc
Confidence            998875     88899999988753

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.79  E-value=6.9e-19  Score=142.79  Aligned_cols=100  Identities=28%  Similarity=0.412  Sum_probs=87.2

Q ss_pred             CCccccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEe-----CCeeEEEEEEEeCCceEEecCCCCCC
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVC-----SGAPKHCLVYETERGFGFAEPFNIYP  109 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~-----~~~v~H~~I~~~~~g~~~~~~~~~F~  109 (148)
                      .++.++||| .|+|++||++|+.  +.+|+||||.|  .+|.|+||++.     ++.++||+|.+.++|.|++.....|.
T Consensus        61 ~le~~~w~~g~~~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~~g~~~~~~~~~F~  140 (452)
T 1fmk_A           61 SIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFN  140 (452)
T ss_dssp             SGGGSTTEEETCCHHHHHHHHTCTTSCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSEES
T ss_pred             cccccccccCCccHHHHHHHhccCCCCCceEEEEeCCCCCCceEEEEEeeccCCCCcEEEEEEEEcCCCCEEEecCcccC
Confidence            456789999 9999999999965  47799999999  78999999997     57899999999888888887767899


Q ss_pred             CHHHHHHHHhhCCccccCCCccceecccccCCCCC
Q psy8554         110 SLGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG  144 (148)
Q Consensus       110 sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~p~  144 (148)
                      |+.+||+||+.+.     ++++..|..||+...|.
T Consensus       141 Sl~~Li~~y~~~~-----~~l~~~l~~~~~~~~~~  170 (452)
T 1fmk_A          141 SLQQLVAYYSKHA-----DGLCHRLTTVCPTSKPQ  170 (452)
T ss_dssp             SHHHHHHHHTTCC-----TTSSSCCCEECCCCCCC
T ss_pred             CHHHHHHHhhhcc-----ccchhhccccccccccc
Confidence            9999999999876     88899999998765554

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*

Probab=99.77  E-value=6.6e-19  Score=146.19  Aligned_cols=99  Identities=29%  Similarity=0.402  Sum_probs=85.1

Q ss_pred             ccccccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeCC---------eeEEEEEEEeCCceEEecCCCCC
Q psy8554          42 DEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSG---------APKHCLVYETERGFGFAEPFNIY  108 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~~---------~v~H~~I~~~~~g~~~~~~~~~F  108 (148)
                      +.++||| .|+|++||.+|.. .++|+||||+|  .+|.|+||++..+         .++||+|... +|.|+++....|
T Consensus       106 ~~~~w~~g~i~r~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~Lsv~~~~~~~~~~~~~~v~h~~I~~~-~g~~~l~~~~~F  184 (532)
T 2b3o_A          106 TSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCE-GGRYTVGGLETF  184 (532)
T ss_dssp             GGCTTBCTTCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEEEEEC----CCEEEEEEEEBCC-TTSBBSSSSCCB
T ss_pred             ccccccccccchHHHHHHHhcCCCCceEEEecCCCCCCceEEEEEecCccccccCCCceEEEEEEEc-CCceeeCCCccc
Confidence            4568999 9999999999954 57899999999  8899999999877         8999999886 566767656789


Q ss_pred             CCHHHHHHHHhhCCccccCCCccceecccccCCC
Q psy8554         109 PSLGALVLHYAANSLEEHNDDLKTTLAYPVFAPA  142 (148)
Q Consensus       109 ~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~  142 (148)
                      .||.+||+||+++++.. ..|+.+.|+.||.+..
T Consensus       185 ~sl~eLV~~y~~~~l~~-~~g~~~~L~~P~~~t~  217 (532)
T 2b3o_A          185 DSLTDLVEHFKKTGIEE-ASGAFVYLRQPYYATR  217 (532)
T ss_dssp             SSHHHHHHHHHHHCEEC-SSSCEECCCEECCCCC
T ss_pred             CcHHHHHhhccccCccc-cCCeeEeccccccccc
Confidence            99999999999988754 4788999999998643

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.76  E-value=1.6e-18  Score=143.55  Aligned_cols=99  Identities=28%  Similarity=0.417  Sum_probs=84.9

Q ss_pred             Cccccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEe-----CCeeEEEEEEEeCCceEEecCCCCCCC
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVC-----SGAPKHCLVYETERGFGFAEPFNIYPS  110 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~-----~~~v~H~~I~~~~~g~~~~~~~~~F~s  110 (148)
                      ++.++||| .|+|++||++|+.  ..+|+||||.|  .+|.|+|||+.     ++.++||+|.+.++|.|++.....|.|
T Consensus       145 l~~~~wy~g~i~r~~ae~~L~~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~~g~~~i~~~~~F~S  224 (535)
T 2h8h_A          145 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNS  224 (535)
T ss_dssp             GGGSTTBCCSCCHHHHHHHHTCTTCCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEBC-CCSCEEEETTEEESS
T ss_pred             ccccceeccccCHHHHHHHhccCCCCCCeEEEEecCCCCCcEEEEEEeeccCCCCceEEEEEEEcCCCcEEeeccccccC
Confidence            56679999 9999999999965  47799999999  78999999996     568999999987778777776678999


Q ss_pred             HHHHHHHHhhCCccccCCCccceecccccCCCCC
Q psy8554         111 LGALVLHYAANSLEEHNDDLKTTLAYPVFAPASG  144 (148)
Q Consensus       111 l~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~p~  144 (148)
                      +.+||+||+.+.     ++++..|..+|+...|.
T Consensus       225 L~eLv~~y~~~~-----~~~~~~l~~~~~~~~~~  253 (535)
T 2h8h_A          225 LQQLVAYYSKHA-----DGLCHRLTTVCPTSKPQ  253 (535)
T ss_dssp             HHHHHHHHHHCC-----TTSSSCCCEECCCCCCC
T ss_pred             hHHhheeecccc-----Ccccccccccccccccc
Confidence            999999999986     88899999998765544

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.74  E-value=9.5e-18  Score=136.06  Aligned_cols=99  Identities=30%  Similarity=0.493  Sum_probs=86.2

Q ss_pred             CCccccccc-cCCHHHHHHHhc--CCCCceEEEEeC--CCCCEEEEEEe-----CCeeEEEEEEEeCCceEEecCCCCCC
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPS--TTGQYALSIVC-----SGAPKHCLVYETERGFGFAEPFNIYP  109 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~--~~~~G~FLvR~s--~~~~~~Lsv~~-----~~~v~H~~I~~~~~g~~~~~~~~~F~  109 (148)
                      .++.++||| .|+|++||++|.  +..+|+||||.|  .+|.|+||++.     ++.++||+|...++|.+++.....|.
T Consensus        66 ~le~~~W~~g~i~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~H~~I~~~~~g~~~i~~~~~F~  145 (454)
T 1qcf_A           66 SLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFS  145 (454)
T ss_dssp             CGGGSTTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECTTSCEESSSSSCBS
T ss_pred             ccccccccccccchhhhhhhhhcCCCCCceEEEEECcCCCCeEEEEEEecccCCCCceEEEEEEEcCCCcEEEeCccccC
Confidence            457789999 999999999994  378999999999  88999999998     67899999998888888877767899


Q ss_pred             CHHHHHHHHhhCCccccCCCccceecccccCCCC
Q psy8554         110 SLGALVLHYAANSLEEHNDDLKTTLAYPVFAPAS  143 (148)
Q Consensus       110 sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~~p  143 (148)
                      ++.+||+||++..     +++...|..||....|
T Consensus       146 sl~eLv~~y~~~~-----~~l~~~~~~~~~~~~~  174 (454)
T 1qcf_A          146 TLQELVDHYKKGN-----DGLCQKLSVPCMSSKP  174 (454)
T ss_dssp             SHHHHHHHHTSSC-----TTSSSCCCSBCCCCCC
T ss_pred             CHHHHHHHHHhcc-----CCccccccccccccCc
Confidence            9999999999875     7888888888865444

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.74  E-value=1e-17  Score=135.75  Aligned_cols=97  Identities=29%  Similarity=0.435  Sum_probs=83.6

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      .++.++||| .|+|++||++|+...+|+||||.|  ..|.|+||++.++.++||+|.... +.+++.....|.|+.+||+
T Consensus        76 ~~~~~~wyhg~i~r~~ae~~L~~~~~G~FlvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~-~~~~i~~~~~F~sl~eLv~  154 (450)
T 1k9a_A           76 KLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHA-SKLSIDEEVYFENLMQLVE  154 (450)
T ss_dssp             TEESCTTBCTTCCHHHHHHHTCSCCTTEEEEEECSSSTTSEEEEEECSSSEEEEEEEEET-TEEESSSSSCBSSHHHHHH
T ss_pred             ccccccccccCcCHHHhhhhhccCCCceEEEEecCCCCCceEEEEEeCCeeeEEEEEecC-CceEeccccccccHHHHHh
Confidence            357789999 999999999998778899999999  789999999999999999997654 4566555688999999999


Q ss_pred             HHhhCCccccCCCccceecccccCCC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFAPA  142 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~~~  142 (148)
                      ||+...     +++..+|..|+....
T Consensus       155 ~y~~~~-----~~~~~~l~~~~~~~~  175 (450)
T 1k9a_A          155 HYTTDA-----DGLCTRLIKPKVMEG  175 (450)
T ss_dssp             HHHHCC-----TTSSSCCCEECCCTT
T ss_pred             hhcccc-----cchhhhccccccccC
Confidence            999886     788888888876543

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=99.73  E-value=1.8e-19  Score=143.55  Aligned_cols=85  Identities=54%  Similarity=0.969  Sum_probs=0.0

Q ss_pred             ccccccCCCCCCccccccc-cCCHHHHHHHhcCCCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCC
Q psy8554          30 ALNRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI  107 (148)
Q Consensus        30 ~~~~~~~~~~~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~  107 (148)
                      .+.+.++++++++.++||| .|+|.+||++|.+.++|+||||.| .+|.|+||++.++.|+||+|.+.++|+++++....
T Consensus       287 ~~~e~~~~~~~~~~~~WyhG~isR~~AE~LL~~~~~G~FLVR~Ss~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~  366 (373)
T 3hhm_B          287 SLVEDDEDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNL  366 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccCCCCcCCCCCHHHHHHHhccCCCCcEEEEecCCCCCEEEEEEECCeEEEEEEEEcCCCcEEeCCCCC
Confidence            4456667788999999999 999999999998889999999999 99999999999999999999998888888887678


Q ss_pred             CCCHHHH
Q psy8554         108 YPSLGAL  114 (148)
Q Consensus       108 F~sl~eL  114 (148)
                      |+||.+|
T Consensus       367 F~SL~eL  373 (373)
T 3hhm_B          367 YSSLKEL  373 (373)
T ss_dssp             -------
T ss_pred             CCChhhC
Confidence            9999986

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.71  E-value=1.3e-16  Score=118.14  Aligned_cols=83  Identities=31%  Similarity=0.471  Sum_probs=75.1

Q ss_pred             ccccccc-cCCHHHHHHHh-cCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          42 DEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL-~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      ...+||| .|+|++||.+| ...++|+||||.|  .+|.|+||++.++.++||+|.+..+|.+++.. ..|+|+.+||+|
T Consensus        56 ~~~~w~~g~isr~~ae~lL~~~~~~G~fLvR~S~~~~g~~~LSv~~~~~v~h~~I~~~~~g~~~~~~-~~f~sl~eLv~~  134 (217)
T 1gri_A           56 KPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV-VKFNSLNELVDY  134 (217)
T ss_dssp             CCCSSBCTTCCHHHHHHHHHTCSSTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECSSSCEESSS-CEESSHHHHHHH
T ss_pred             ccchhhcccCCHHHHHHHHhccCCCceEEEEccCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEee-eEcCCHHHHHHh
Confidence            4468999 99999999999 5579999999999  88999999999999999999998888888874 789999999999


Q ss_pred             HhhCCccc
Q psy8554         118 YAANSLEE  125 (148)
Q Consensus       118 y~~~~l~~  125 (148)
                      |+++++..
T Consensus       135 ~~~~~~~~  142 (217)
T 1gri_A          135 HRSTSVSR  142 (217)
T ss_dssp             HHHSCSSS
T ss_pred             hhcccccc
Confidence            99987653

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=99.69  E-value=6.8e-17  Score=132.20  Aligned_cols=77  Identities=26%  Similarity=0.429  Sum_probs=67.0

Q ss_pred             Ccccccc-----c-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHH
Q psy8554          41 HDEKTWL-----V-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLG  112 (148)
Q Consensus        41 ~~~~~Wy-----h-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~  112 (148)
                      ++.++||     | .|+|++||++|.. ++|+||||+|  .+|.|+||++.++.++||+|.+  +|.|+++. ..|+||.
T Consensus        43 ~~~~~wy~~~w~hg~i~r~~ae~lL~~-~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~--~g~~~~~~-~~F~sl~  118 (463)
T 3cxl_A           43 VENRPKYYGREFHGMISREAADQLLIV-AEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYY--DGKHFVGE-KRFESIH  118 (463)
T ss_dssp             CTTCCTTCCTTBCCSCCHHHHHHHHTT-STTEEEEEECSSSTTCEEEEEECSSSEEEEECEE--SSSEESSS-CCBSCHH
T ss_pred             ccCCCCccccccccCCCHHHHHHHHcC-CCCeEEEeccCCCCCCEEEEEEECCEEEEEEEec--CCeEEECC-CccCCHH
Confidence            4555666     9 9999999999964 6899999999  8899999999999999999987  56677765 7899999


Q ss_pred             HHHH-----HHhhC
Q psy8554         113 ALVL-----HYAAN  121 (148)
Q Consensus       113 eLI~-----~y~~~  121 (148)
                      |||+     ||+..
T Consensus       119 ~Lv~dGl~~~~~~~  132 (463)
T 3cxl_A          119 DLVTDGLITLYIET  132 (463)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccC
Confidence            9999     98754

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.68  E-value=4.6e-17  Score=128.97  Aligned_cols=80  Identities=28%  Similarity=0.494  Sum_probs=57.5

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      .++.++||| .|+|++||++|.  .+|+||||+| ..+.|+||++.++.++||+|...++ .|..++ ..|+|+.+||+|
T Consensus         9 ~l~~~~wyhg~i~r~~a~~lL~--~~G~flvR~s~~~~~~~lsv~~~~~~~h~~i~~~~~-~~~~~~-~~F~sl~~LI~~   84 (377)
T 3cbl_A            9 PLHEQLWYHGAIPRAEVAELLV--HSGDFLVRESQGKQEYVLSVLWDGLPRHFIIQSLDN-LYRLEG-EGFPSIPLLIDH   84 (377)
T ss_dssp             CGGGCTTBCTTCCHHHHHHHCC--STTEEEEEECC--CCEEEEC-----CCEEEC----C-CCCC-----CCSHHHHHHH
T ss_pred             ccccCCccCCCCCHHHHHHHHh--cCCCEEEEEeCCCCcEEEEEEECCCccchhhccccc-eEEecc-eeccchHHHHHH
Confidence            357789999 999999999998  7899999999 4449999999999999999987644 444443 679999999999


Q ss_pred             HhhCCc
Q psy8554         118 YAANSL  123 (148)
Q Consensus       118 y~~~~l  123 (148)
                      |+.++.
T Consensus        85 y~~~~~   90 (377)
T 3cbl_A           85 LLSTQQ   90 (377)
T ss_dssp             HHHHTC
T ss_pred             HhhccC
Confidence            998653

>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}

Probab=99.38  E-value=1.4e-12  Score=94.18  Aligned_cols=76  Identities=17%  Similarity=0.224  Sum_probs=64.2

Q ss_pred             ccccccccCCHHHHHHHhcCCCCceEEEEeC-CCCCEEEEEEe-CCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHHh
Q psy8554          42 DEKTWLVRMSRAQAEALLSGRPDGTFLIRPS-TTGQYALSIVC-SGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYA  119 (148)
Q Consensus        42 ~~~~Wyh~isr~~Ae~lL~~~~~G~FLvR~s-~~~~~~Lsv~~-~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y~  119 (148)
                      -..|||++++..+||++|... +|+||||+| +++.++|+++. ++.+.|+.|...+. .+.+++ ..|.+|.|||.+|.
T Consensus        12 I~HP~F~n~s~~qAe~~L~~~-~G~~liRPSsk~~~ltit~Kv~d~~~~Hi~I~E~~k-~l~ig~-~~fedLDElI~~yv   88 (178)
T 2xp1_A           12 YKHPLFKNFNVTESENYLRSS-TDDFLIRKGSRHGYCVLVIKFASDVFVHMKIEEHSE-HYTCSN-KHFEDIDEVISVYV   88 (178)
T ss_dssp             GGSTTEECCCHHHHHHHHHHS-SCCEEEEECSSTTEEEEEEEEETTEEEEEEEEECSS-CEEETT-EEESSHHHHHHHTH
T ss_pred             ccCCCcCCCCHHHHHHHHhcC-CCCEEEeecCCCCcEEEEEEECCCcEEEEEEEECCC-EEEECC-cEECCHHHHHHHHH
Confidence            346899999999999999764 599999999 87789999995 78899999976543 456665 58999999999997


Q ss_pred             h
Q psy8554         120 A  120 (148)
Q Consensus       120 ~  120 (148)
                      .
T Consensus        89 ~   89 (178)
T 2xp1_A           89 R   89 (178)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}

Probab=98.45  E-value=4.3e-07  Score=65.38  Aligned_cols=74  Identities=14%  Similarity=0.133  Sum_probs=57.7

Q ss_pred             ccccccccCCHHHHHHHhcCCCCce--EEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          42 DEKTWLVRMSRAQAEALLSGRPDGT--FLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        42 ~~~~Wyh~isr~~Ae~lL~~~~~G~--FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      ..++||+. +++++|++|....++.  |.++.+  .+|.|+|++. .+.++|-.|... .|+.|  ..+.|+||.+||+|
T Consensus        99 ~~h~kf~~-s~~~~e~~L~~~~p~~~~Y~f~~s~~~PG~f~l~~~-~~~~~~e~i~V~-~g~~~--~~~~f~sl~~L~~~  173 (178)
T 2xp1_A           99 KAHAKYFN-SPEDAEKLLSSFDGSKVVYAFYFSRKYPGKLTFAYN-NGSILEEYIGVS-DMLTY--NNSTFKDIDSFVAY  173 (178)
T ss_dssp             HHSTTBCS-CTTTSHHHHHTCCSSSCEEEEEECSSSTTEEEEEEE-SSSEEEEEEEES-SSEEE--TTEEESSHHHHHHH
T ss_pred             HhCCccCC-CHHHHHHHHHHhCCCCceEEEEecCCCCCeEEEEEc-CCCCceeeEEEc-cCCEE--cCcCCcCHHHHHHH
Confidence            34689997 7899999996543333  888888  8999999997 667777666666 56565  34789999999999


Q ss_pred             Hhh
Q psy8554         118 YAA  120 (148)
Q Consensus       118 y~~  120 (148)
                      |++
T Consensus       174 fK~  176 (178)
T 2xp1_A          174 RKR  176 (178)
T ss_dssp             HHC
T ss_pred             Hhh
Confidence            986

>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A*

Probab=98.22  E-value=1.7e-06  Score=70.36  Aligned_cols=73  Identities=21%  Similarity=0.290  Sum_probs=58.8

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeC---CeeEEEEEEEeCCceEEecCCCCCCCHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCS---GAPKHCLVYETERGFGFAEPFNIYPSLGAL  114 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~---~~v~H~~I~~~~~g~~~~~~~~~F~sl~eL  114 (148)
                      +....|+| .|+|++|+++|.+++.|+||||-|  ..|.+++++...   +.++|+.|..... .      ..-.|++|.
T Consensus       348 lW~dg~I~GFIsk~ea~~lL~~~~~GTFLLRFSeS~~GgitIsyV~~d~~~~~kh~~v~p~t~-~------ls~~SL~D~  420 (473)
T 1uur_A          348 LWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDT-A------AAKKTFPDF  420 (473)
T ss_dssp             HHHHTSSCBSCCHHHHHHTTSSCCTTCEEEEECSSSTTCEEEEEECSSSSCCEEEEECCGGGS-B------TTTBCHHHH
T ss_pred             HHhcCcEEEEecHHHHHHHhhCCCCCeEEEEeccCCCceEEEEEEeecCCCceeEEEecCCcc-c------cccCCHHHH
Confidence            34558999 999999999999999999999999  799999999874   6888998864321 1      234789999


Q ss_pred             HHHHhh
Q psy8554         115 VLHYAA  120 (148)
Q Consensus       115 I~~y~~  120 (148)
                      |..|..
T Consensus       421 I~d~~q  426 (473)
T 1uur_A          421 LSEHSQ  426 (473)
T ss_dssp             HTTCTT
T ss_pred             HhccHH
Confidence            887643

>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}

Probab=97.24  E-value=0.00025  Score=59.27  Aligned_cols=68  Identities=24%  Similarity=0.251  Sum_probs=47.6

Q ss_pred             cccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCe-eEEEEEEEeCCceEEecCCCCCCCHHHHHHHH
Q psy8554          45 TWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGA-PKHCLVYETERGFGFAEPFNIYPSLGALVLHY  118 (148)
Q Consensus        45 ~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~-v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y  118 (148)
                      .|.+ .|++++|+++|.+.++|+||+|-|  ..|.|++++...+. .+++.|.-      +...+-.-.|++|+|..|
T Consensus       465 G~I~Gfisk~~a~~~L~~~~~GtFLlRFSds~~G~~tisyv~~~~~~~v~~v~P------~t~kdl~~~sL~d~I~d~  536 (585)
T 1y1u_A          465 GAILGFVNKQQAHDLLINKPDGTFLLRFSDSEIGGITIAWKFDSPDRNLWNLKP------FTTRDFSIRSLADRLGDL  536 (585)
T ss_dssp             TCCCBSCCHHHHHHHHHTSCTTCEEEEEETTSTTEEEEEECCSSCCSSCSEEEE------ECHHHHHHSCHHHHHHHC
T ss_pred             cceEEeccHHHHHHHHhCCCCCceEEEeccCCcCcEEEEEEecCCCceeEeecC------CchhhcccCCHHHHHhcc
Confidence            4456 799999999999999999999999  79999999987432 22222322      111111246788988877

>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}

Probab=97.09  E-value=0.00063  Score=57.77  Aligned_cols=69  Identities=23%  Similarity=0.305  Sum_probs=48.2

Q ss_pred             ccc-cCCHHHHHHHhcCCCCceEEEEeC---CCCCEEEEEEeC---C-eeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          46 WLV-RMSRAQAEALLSGRPDGTFLIRPS---TTGQYALSIVCS---G-APKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        46 Wyh-~isr~~Ae~lL~~~~~G~FLvR~s---~~~~~~Lsv~~~---~-~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      |.. .|++++|+++|+++++|+||+|-|   ..|.++++....   + .+.++.|.-     |-.. +-.=.|++|.|..
T Consensus       577 ~I~GFIsK~~a~~lL~~~~~GTFLLRFSdS~~~Ggitia~V~~~~~~~~~~v~~v~P-----~t~k-dl~~~sl~d~i~d  650 (683)
T 1yvl_A          577 CIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEP-----YTKK-ELSAVTFPDIIRN  650 (683)
T ss_dssp             CCCBCCCHHHHHHHHSSSCSSCEEEEECSSCSSCEEEEEEEECCC---CCEEEEBCC-----EEHH-HHTTSCHHHHHHH
T ss_pred             ceEEeecHHHHHHHHhCCCCCeEEEecCCCCCCCceEEEEEeccCCCccceEEecCC-----CchH-hhhhCCHHHHhhc
Confidence            345 689999999999999999999977   678888888763   2 333333321     1111 1123688999999


Q ss_pred             Hhh
Q psy8554         118 YAA  120 (148)
Q Consensus       118 y~~  120 (148)
                      |+.
T Consensus       651 ~~~  653 (683)
T 1yvl_A          651 YKV  653 (683)
T ss_dssp             CCE
T ss_pred             hhh
Confidence            864

>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}

Probab=96.98  E-value=0.00011  Score=66.02  Aligned_cols=78  Identities=22%  Similarity=0.374  Sum_probs=0.0

Q ss_pred             cccccccCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeC-CeeEEEEEEEeCC------c-eEEecCCCCCCCHH
Q psy8554          43 EKTWLVRMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCS-GAPKHCLVYETER------G-FGFAEPFNIYPSLG  112 (148)
Q Consensus        43 ~~~Wyh~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~-~~v~H~~I~~~~~------g-~~~~~~~~~F~sl~  112 (148)
                      .+|-||+++-.+||+.|.+...|.++||+|  .....+++++.. +...|+-|.-.+.      | .+.+++ ..|.+|.
T Consensus      1023 ~HP~F~n~~~~qAe~~L~~~~~Gd~vIRPSSkG~dhLtvTwKv~d~vyqHidV~E~~K~n~~slG~~L~I~~-~~y~DLD 1101 (1219)
T 3psi_A         1023 NHPYYFPFNGRQAEDYLRSKERGEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELEKENPLALGKVLIVDN-QKYNDLD 1101 (1219)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCCCCCCHHHHHHHHhcCCCCCEEEeecCCCCCceEEEEEEcCCcEEEEEEEecCCccccccCceEEECC-ceECCHH
Confidence            347888999999999999899999999999  355567777764 6678888864321      2 234454 5899999


Q ss_pred             HHHHHHhhC
Q psy8554         113 ALVLHYAAN  121 (148)
Q Consensus       113 eLI~~y~~~  121 (148)
                      |||.-|-..
T Consensus      1102 Eli~r~V~p 1110 (1219)
T 3psi_A         1102 QIIVEYLQN 1110 (1219)
T ss_dssp             ---------
T ss_pred             HHHHHHHHH
Confidence            999887553

>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A

Probab=96.88  E-value=5.8e-05  Score=63.03  Aligned_cols=69  Identities=25%  Similarity=0.411  Sum_probs=49.1

Q ss_pred             cccc-cCCHHHHHHHhcCCCCceEEEEeC-C--CCCEEEEEEeC---CeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          45 TWLV-RMSRAQAEALLSGRPDGTFLIRPS-T--TGQYALSIVCS---GAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        45 ~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s-~--~~~~~Lsv~~~---~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      .|.+ .|+|++|+++|.+.++|+||+|-| .  .|.++++....   |.+.|+.|.-      +....-.-.|++|+|..
T Consensus       457 G~I~Gfisk~~a~~lL~~~~~GTFLlRFSes~~~Ggitis~v~~~~~g~~~~~~v~P------~t~~~l~~~sLad~I~d  530 (596)
T 1bg1_A          457 GYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVEP------YTKQQLNNMSFAEIIMG  530 (596)
T ss_dssp             SCCCBCCCTTGGGTTTTTSCTTCBCEEECSSCSSCCEEECCCCSSSCSSCCCCCCCC------BCGGGGTSSCHHHHTTS
T ss_pred             CCeEEEecHHHHHHHHhCCCCCeeEEeecCCCCCCcEEEEEEecCCCCceeEEecCC------CchhhhccCCHHHHHHh
Confidence            4556 799999999999999999999988 4  89999988764   3344544432      11111234589999976


Q ss_pred             Hh
Q psy8554         118 YA  119 (148)
Q Consensus       118 y~  119 (148)
                      |+
T Consensus       531 ~~  532 (596)
T 1bg1_A          531 YK  532 (596)
T ss_dssp             CC
T ss_pred             hh
Confidence            64

>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1

Probab=96.32  E-value=0.0029  Score=52.66  Aligned_cols=69  Identities=23%  Similarity=0.361  Sum_probs=46.3

Q ss_pred             ccc-cCCHHHHHHHhcCCCCceEEEEeC---CCCCEEEEEEeC---C-eeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          46 WLV-RMSRAQAEALLSGRPDGTFLIRPS---TTGQYALSIVCS---G-APKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        46 Wyh-~isr~~Ae~lL~~~~~G~FLvR~s---~~~~~~Lsv~~~---~-~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      |.. .|++++|+++|+++++|+||+|-|   ..|.++++....   + .+.++.|.-      |....-.=.|++|.|..
T Consensus       442 ~I~GFIsK~~a~~lL~~~~~GTFLLRFSdS~~~GgITia~V~~~~~~~~~~v~~v~P------~T~kdl~~~sL~d~i~d  515 (575)
T 1bf5_A          442 CIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEP------YTKKELSAVTFPDIIRN  515 (575)
T ss_dssp             CCCCCCCHHHHHHHTTTCCSCCCCEEECSSCSSCCEEEEECCCCSSSSCCCCEECCC------BCHHHHHSSCHHHHHHT
T ss_pred             ceEEeecHHHHHHHHhCCCCCeEEEecCCCCCCCcEEEEEEecCCCCccceeEecCC------CchhhhhhCCHHHHhhc
Confidence            345 679999999999999999999988   588888888763   2 332333321      11100112478899988


Q ss_pred             Hhh
Q psy8554         118 YAA  120 (148)
Q Consensus       118 y~~  120 (148)
                      |+.
T Consensus       516 ~~~  518 (575)
T 1bf5_A          516 YKV  518 (575)
T ss_dssp             CCC
T ss_pred             chh
Confidence            854

>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*

Probab=96.00  E-value=0.015  Score=44.96  Aligned_cols=43  Identities=21%  Similarity=0.357  Sum_probs=38.0

Q ss_pred             ccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeCCe
Q psy8554          44 KTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCSGA   86 (148)
Q Consensus        44 ~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~~~   86 (148)
                      .+-|. .||-.||.+.|+.  ..+|+|++|-|  ..|.|++++...++
T Consensus       243 hpGy~aFlTydEv~~~L~~~~~kpGsYIfR~ScTrlGqwAIgyV~~~~  290 (329)
T 3bux_B          243 HPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADG  290 (329)
T ss_dssp             CTTBCTTCCHHHHHHHHGGGTTSTTEEEEEECSSSTTSEEEEEECTTS
T ss_pred             CcchhheeeHHHHHHHHHHhcCCCCcEEEEeccCccCceEEEEECCCC
Confidence            35688 9999999999987  89999999999  99999999987543

>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}

Probab=95.81  E-value=0.019  Score=44.14  Aligned_cols=45  Identities=24%  Similarity=0.425  Sum_probs=38.6

Q ss_pred             ccccc-cCCHHHHHHHhc--CCCCceEEEEeC--CCCCEEEEEEeC-CeeE
Q psy8554          44 KTWLV-RMSRAQAEALLS--GRPDGTFLIRPS--TTGQYALSIVCS-GAPK   88 (148)
Q Consensus        44 ~~Wyh-~isr~~Ae~lL~--~~~~G~FLvR~s--~~~~~~Lsv~~~-~~v~   88 (148)
                      .+-|. .||-.||...|.  ...+|+|++|-|  ..|.|+|+.... +.+.
T Consensus       228 hpGy~aFlTydEV~~~L~~~~~KpGsYIfR~ScTrlGqwAIgYV~s~g~I~  278 (323)
T 3op0_A          228 HPGYMAFLTYDEVQERLQACRDKPGSYIFRPSCTRLGQWAIGYVSSDGSIL  278 (323)
T ss_dssp             CTTBCTTCCHHHHHHHTTGGGGSTTEEEEEECSSSTTCEEEEEECTTSCEE
T ss_pred             CcceeeeeeHHHHHHHHHHhccCCCcEEEEeccCccCceEEEEEcCCCcee
Confidence            46788 999999999997  589999999999  999999999875 3443

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=90.67  E-value=0.011  Score=38.32  Aligned_cols=20  Identities=30%  Similarity=0.489  Sum_probs=17.8

Q ss_pred             Cccccccc-cCCHHHHHHHhc
Q psy8554          41 HDEKTWLV-RMSRAQAEALLS   60 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~   60 (148)
                      ++.++||| .|+|++||++|.
T Consensus        87 ~~~~~w~~g~isR~~Ae~lL~  107 (109)
T 2yt6_A           87 IQAEEWYFGKMGRKDAESGPS  107 (109)
T ss_dssp             CTTTHHHHHCCCSCCCCCCSC
T ss_pred             ccccccccCCcCHHHHHHHhh
Confidence            46678999 999999999985

>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}

Probab=90.04  E-value=0.057  Score=48.83  Aligned_cols=79  Identities=13%  Similarity=0.154  Sum_probs=0.0

Q ss_pred             ccccccccCCHHHHHHHhcC----CC-CceEEEEeC--CCCCEEEEEEeC--CeeEEEEEEEeCCceEEecCCCCCCCHH
Q psy8554          42 DEKTWLVRMSRAQAEALLSG----RP-DGTFLIRPS--TTGQYALSIVCS--GAPKHCLVYETERGFGFAEPFNIYPSLG  112 (148)
Q Consensus        42 ~~~~Wyh~isr~~Ae~lL~~----~~-~G~FLvR~s--~~~~~~Lsv~~~--~~v~H~~I~~~~~g~~~~~~~~~F~sl~  112 (148)
                      ..+..|..-+++++++.|..    ++ --.|.+.-+  .+|.|.|++..+  ..++|--|....+|+.|.+  ..|+++.
T Consensus      1119 ~~h~kf~~g~~~eve~~L~~~k~~nP~ri~Y~f~~~~~~PG~F~L~f~~~~~~~~~~~~v~v~p~Gf~~r~--~~f~~~~ 1196 (1219)
T 3psi_A         1119 TSSEKFKSGTKKDVVKFIEDYSRVNPNKSVYYFSLNHDNPGWFYLMFKINANSKLYTWNVKLTNTGYFLVN--YNYPSVI 1196 (1219)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhChhhcCCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCCEEEEEEecCCCCCceeeeEEEccCeEEEcC--ccCcCHH
Confidence            44455556678999999953    11 123444445  899999999863  4577777777778877765  5799999


Q ss_pred             HHHHHHhhCC
Q psy8554         113 ALVLHYAANS  122 (148)
Q Consensus       113 eLI~~y~~~~  122 (148)
                      +|+.+|+.+-
T Consensus      1197 ~L~~~FK~~~ 1206 (1219)
T 3psi_A         1197 QLCNGFKTLL 1206 (1219)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHh
Confidence            9999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	148
d1qada_	107	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	4e-35
d1fu6a_	111	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	5e-23
d1r1qa_	97	d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA	8e-22
d1opka2	101	d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (M	2e-20
d1xa6a2	141	d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal dom	2e-20
d1mila_	104	d.93.1.1 (A:) Shc adaptor protein {Human (Homo sap	3e-20
d1nrva_	105	d.93.1.1 (A:) Growth factor receptor-bound protein	5e-20
d2izva2	112	d.93.1.1 (A:274-385) Suppressor of cytokine signal	1e-19
d2eyva1	109	d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo	2e-19
d1k9aa2	101	d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (	3e-19
d2oq1a2	124	d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-7	4e-19
d2qmsa1	113	d.93.1.1 (A:420-532) Growth factor receptor-bound	8e-19
d2shpa2	109	d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Huma	2e-18
d1jwoa_	97	d.93.1.1 (A:) Csk homologous kinase Chk {Human (Ho	2e-18
d1jyra_	96	d.93.1.1 (A:) Growth factor receptor-bound protein	5e-18
d1a81a2	125	d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (H	8e-18
d2c9wa2	103	d.93.1.1 (A:32-134) Suppressor of cytokine signali	9e-18
d1d4ta_	104	d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sap	1e-17
d1rjaa_	100	d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tu	1e-17
d1i3za_	103	d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat	2e-17
d1a81a1	129	d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Hom	4e-17
d2oq1a1	130	d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70	4e-17
d1lkka_	105	d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo	4e-17
d2fcia1	105	d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (B	8e-17
d2cs0a1	106	d.93.1.1 (A:8-113) Hematopoietic SH2 domain contai	1e-16
d1o48a_	106	d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo s	1e-16
d1g83a2	104	d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (H	2e-16
d1qcfa2	103	d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {H	2e-16
d2shpa3	108	d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Hu	9e-16
d1rpya_	86	d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus nor	1e-15
d1blja_	114	d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mou	2e-14
d1luia_	108	d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mou	5e-14
d1uura3	131	d.93.1.1 (A:577-707) STAT homologue {Dictyostelium	2e-13
d1bg1a3	141	d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus)	6e-12

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 107

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  115 bits (290), Expect = 4e-35
 Identities = 62/106 (58%), Positives = 76/106 (71%), Gaps = 2/106 (1%)

Query: 37  DLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYE 94
           DLPHHDEKTW V   +R +AE LL G+ DGTFL+R S+  G YA S+V  G  KHC++ +
Sbjct: 2   DLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINK 61

Query: 95  TERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA 140
           T  G+GFAEP+N+Y SL  LVLHY   SL +HND L  TLAYPV+A
Sbjct: 62  TATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 107

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 111

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.1 bits (210), Expect = 5e-23
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
            +SR +    L    DGTFL+R ++T   G Y L++   G  K   ++  +  +GF++P 
Sbjct: 17  DISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKYGFSDPL 76

Query: 106 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
             + S+  L+ HY   SL ++N  L   L YPV
Sbjct: 77  T-FNSVVELINHYRNESLAQYNPKLDVKLLYPV 108

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.5 bits (201), Expect = 8e-22
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
            +SR QAE LL G+  G F+IR S +  G +++S+      +H  V    +G  F     
Sbjct: 12  GLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWT-E 70

Query: 107 IYPSLGALVLHYAANSLEEHND 128
            +PSL  LV +Y   S+ +   
Sbjct: 71  KFPSLNKLVDYYRTTSISKQKQ 92

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.5 bits (193), Expect = 2e-20
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
            +SR  AE LLS   +G+FL+R S +  GQ ++S+   G   H  +     G  +    +
Sbjct: 11  PVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSES 70

Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + +L  LV H+         D L TTL YP 
Sbjct: 71  RFNTLAELVHHH-----STVADGLITTLHYPA 97

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.3 bits (195), Expect = 2e-20
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 5/120 (4%)

Query: 24  PMPSLSALNRTERDLPHHDEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSI 81
           P P      R   + P +  + +   +SR QA+ LL G  +G +++R S    G Y L++
Sbjct: 16  PRPKRIICPREVENRPKYYGREFHGIISREQADELLGG-VEGAYILRESQRQPGCYTLAL 74

Query: 82  VCSGAPKHCLVYETERGFGFAEPFNIYPSL--GALVLHYAANSLEEHNDDLKTTLAYPVF 139
                  +  ++   + F   + F     L    L+  Y      E+   + T   Y   
Sbjct: 75  RFGNQTLNYRLFHDGKHFVGEKRFESIHDLVTDGLITLYIETKAAEYISKMTTNPIYEHI 134

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (191), Expect = 3e-20
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 6/92 (6%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
           ++SR +AEALL  + +G FL+R STT  GQY L+ + SG PKH L+ + E      +  +
Sbjct: 13  KLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKD--H 68

Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + S+  L+ ++  N L   +   +  L  PV
Sbjct: 69  RFESVSHLISYHMDNHLPIISAGSELCLQQPV 100

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (190), Expect = 5e-20
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 14/107 (13%)

Query: 41  HDEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYET 95
           H  + W   R+SR ++  ++   G  DG FL+R S +    + L++      K+  +   
Sbjct: 2   HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPC 61

Query: 96  ERG----FGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
           E      F   +    +  L  LV  Y       +   L   L +  
Sbjct: 62  EDDGQTFFSLDDGNTKFSDLIQLVDFYQ-----LNKGVLPCKLKHHC 103

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (188), Expect = 1e-19
 Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 37  DLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVY 93
           DL   +        M +  AEALL G+P+GTFL+R S      +++S        H  + 
Sbjct: 4   DLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIE 63

Query: 94  ETERGFGFAE---PFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFAP 141
           +    F F          P +  L+ HY   S     + L   L+ P+   
Sbjct: 64  QWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPL---LSTPLIRT 111

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (186), Expect = 2e-19
 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 25/113 (22%)

Query: 45  TWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF 101
           +W   R+SR +A ALL G+  G FL+R S+T  G Y LS+  +    H ++  +      
Sbjct: 1   SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPV 60

Query: 102 AEPFNI----------------YPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
                                 + SL AL+  Y  + L+       TTL  PV
Sbjct: 61  PPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT------TTLIEPV 107

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (184), Expect = 3e-19
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
           +++R QAE LL     G FL+R ST   G Y L + C G  +H  +          E   
Sbjct: 10  KITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEE-V 68

Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + +L  LV HY         D L T L  P 
Sbjct: 69  YFENLMQLVEHY-----TTDADGLCTRLIKPK 95

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (185), Expect = 4e-19
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 41  HDEKTWLV-RMSRAQAEALL--SGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETE 96
           H+   W    ++R +AE  L    + DG FL+RP    G YALS++      H L+ + +
Sbjct: 26  HERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQGTYALSLIYGKTVYHYLISQDK 85

Query: 97  RGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            G         + +L  LV +      +   D L   L    
Sbjct: 86  AGKYCIPEGTKFDTLWQLVEYL-----KLKADGLIYCLKEAC 122

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (183), Expect = 8e-19
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 14/107 (13%)

Query: 41  HDEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYET 95
           H  + W   R+SR +++ L+   G  DG FL+R S      + LS+      KH L+  +
Sbjct: 7   HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPS 66

Query: 96  ERG----FGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
           E      F   +    +  L  LV  +       +   L   L +  
Sbjct: 67  EEEGRLYFSMDDGQTRFTDLLQLVEFHQ-----LNRGILPCLLRHCC 108

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (180), Expect = 2e-18
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 49  RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
            ++  +AE LL  R  DG+FL RPS +  G   LS+  +GA  H  +  T   +      
Sbjct: 9   NITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYGG- 67

Query: 106 NIYPSLGALVLHYAANSLEEHNDD-LKTTLAYPV 138
             + +L  LV +Y  +  +    +     L YP+
Sbjct: 68  EKFATLAELVQYYMEHHGQLKEKNGDVIELKYPL 101

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (179), Expect = 2e-18
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
           ++S  +A   L    DG FL+R S    G Y L +       H  V   +      E   
Sbjct: 10  KISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEA-V 68

Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + +L  +V HY      +    + T L  P 
Sbjct: 69  FFCNLMDMVEHY-----SKDKGAICTKLVRPK 95

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (176), Expect = 5e-18
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 49  RMSRAQAEALLS-GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
           ++ RA+AE +LS  R DG FLIR S +  G ++LS+      +H  V     G  F    
Sbjct: 9   KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 68

Query: 106 NIYPSLGALVLHYAANSLEEHN 127
             + SL  LV ++ + S+  + 
Sbjct: 69  K-FNSLNELVDYHRSTSVSRNQ 89

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 8e-18
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 9/102 (8%)

Query: 41  HDEKTWLV-RMSRAQAEALL--SGRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETE 96
           H++  W   ++SR ++E ++    + +G FLIR     G YAL ++  G   H  + + +
Sbjct: 26  HEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNNGSYALCLLHEGKVLHYRIDKDK 85

Query: 97  RGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            G         + +L  LV HY         D L   L  P 
Sbjct: 86  TGKLSIPEGKKFDTLWQLVEHY-----SYKADGLLRVLTVPC 122

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (175), Expect = 9e-18
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 33  RTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKH 89
           R  + L    +  W    M+  +A+  L   P+GTFLIR S+       +S+  S  P +
Sbjct: 4   RLAKALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTN 63

Query: 90  CLVYETERGFGFAEPFNI------YPSLGALVLHYAANS 122
             +   +  F       +      + S+  L+ +Y    
Sbjct: 64  LRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMC 102

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (174), Expect = 1e-17
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 13/98 (13%)

Query: 49  RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 105
           ++SR   E LL     DG++L+R S +  G Y L ++  G      V +TE G   AE  
Sbjct: 10  KISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETA 69

Query: 106 -----NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
                  +  +  L+  +     ++ +  +   L YPV
Sbjct: 70  PGVHKRYFRKIKNLISAF-----QKPDQGIVIPLQYPV 102

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (173), Expect = 1e-17
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 49  RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 104
            +SR++A   L   G   G FLIR S      Y LS+  + A +H  ++    G      
Sbjct: 8   CISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNE 67

Query: 105 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
              + SL  LV ++        +      LA P 
Sbjct: 68  AVSFLSLPELVNYH-----RAQSLSHGLRLAAPC 96

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (172), Expect = 2e-17
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 49  RMSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 100
            +++ + EALL  G  DG FLIR S +  G   L +          ++  + G+      
Sbjct: 9   CLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETD 68

Query: 101 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
              P  I+P+L  LV  Y      +    L   L+ P+
Sbjct: 69  AHTPRTIFPNLQELVSKY-----GKPGQGLVVHLSNPI 101

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 129

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 4e-17
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 9/94 (9%)

Query: 49  RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 104
            ++R +AE  L   G  DG +L+R S    G +ALS+       H  +     G      
Sbjct: 11  NITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAG 70

Query: 105 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
              + S   L  ++      + +D L   L  P 
Sbjct: 71  GRTHASPADLCHYH-----SQESDGLVCLLKKPF 99

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (172), Expect = 4e-17
 Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 49  RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 104
            +SRA+AE  L  +G  DG FL+R      G Y LS+V      H  +     G      
Sbjct: 12  SISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAG 71

Query: 105 FNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
              +     L   Y         D L   L  P 
Sbjct: 72  GKAHCGPAELCEFY-----SRDPDGLPCNLRKPC 100

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (170), Expect = 4e-17
 Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 14/99 (14%)

Query: 49  RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 99
            +SR  AE  L   G   G+FLIR S +  G ++LS+           KH  +   + G 
Sbjct: 10  NLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGG 69

Query: 100 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            +  P   +P L  LV HY        +D L T L+ P 
Sbjct: 70  FYISPRITFPGLHELVRHY-----TNASDGLCTRLSRPC 103

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.9 bits (168), Expect = 8e-17
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 10/101 (9%)

Query: 41  HDEKTWLV-RMSRAQAEALLSGRP-DGTFLIRPSTTGQ-YALSIVCSGAPKHCLVYETER 97
           H+ K W    ++RAQAE +L   P DG FL+R       YA+S    G  KHC V +  +
Sbjct: 6   HESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQEGQ 65

Query: 98  GFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
                     + SL  L+ +Y  + L       K  L YP+
Sbjct: 66  TVMLGNSE--FDSLVDLISYYEKHPLY-----RKMKLRYPI 99

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (167), Expect = 1e-16
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRP-STTGQYALSIVCSGAPKHCLVYETERG-FGFAEPFN 106
            +SR  AE LL  +P G+FLIR   +   Y LS     +  H +V   + G F       
Sbjct: 15  AISREDAENLLESQPLGSFLIRVSHSHVGYTLSYKAQSSCCHFMVKLLDDGTFMIPGEKV 74

Query: 107 IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            + SL ALV  +    +    +  +  L  P 
Sbjct: 75  AHTSLDALVTFHQQKPI----EPRRELLTQPC 102

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (167), Expect = 1e-16
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 14/99 (14%)

Query: 49  RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPK-----HCLVYETERGF 99
           +++R ++E LL  +  P GTFL+R S T  G Y LS+      K     H  + + + G 
Sbjct: 11  KITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGG 70

Query: 100 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            +      + SL  LV +Y      +H D L   L    
Sbjct: 71  FYITSRTQFNSLQQLVAYY-----SKHADGLCHRLTTVC 104

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 2e-16
 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 49  RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCS-----GAPKHCLVYETERGF 99
           ++ R  AE  L   G P GTFLIR S T  G Y+LSI           KH  + + + G 
Sbjct: 12  KLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGG 71

Query: 100 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
            +      + +L  LV HY      E    L + L  P
Sbjct: 72  YYITTRAQFETLQQLVQHY-----SERAAGLSSRLVVP 104

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 2e-16
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 14/99 (14%)

Query: 49  RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 99
            +SR  AE  L   G   G+F+IR S T  G Y+LS+           KH  +   + G 
Sbjct: 7   GISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGG 66

Query: 100 GFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
            +  P + + +L  LV HY     ++ ND L   L+ P 
Sbjct: 67  FYISPRSTFSTLQELVDHY-----KKGNDGLCQKLSVPC 100

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 9e-16
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 15/103 (14%)

Query: 49  RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAP----------KHCLVYET 95
            +S  +AE LL+ +   G+FL+R S +  G + LS+                 H ++   
Sbjct: 6   HLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQ 65

Query: 96  ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
           E  +        + SL  LV HY  N + E        L  P+
Sbjct: 66  ELKYDVGGG-ERFDSLTDLVEHYKKNPMVE-TLGTVLQLKQPL 106

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.8 bits (160), Expect = 1e-15
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 49  RMSRAQAEALLS---GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAE 103
            +SR +A  L+     R  G F+IR S T  G+  L+    G  KH  +     G    +
Sbjct: 11  TLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSLNGHGQCHVQ 70

Query: 104 PFNIYPSLGALVLHY 118
               + S+  ++ H+
Sbjct: 71  H-LWFQSVFDMLRHF 84

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (153), Expect = 2e-14
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 49  RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCS----GAPKHCLVYETERGFG 100
            +SR  AE  L       G+FLIR S +  G ++LS+          KH  +   + G  
Sbjct: 18  TISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGY 77

Query: 101 FAEPFNIYPSLGALVLHYAANSLEEHNDDLKTTLAYP 137
           +  P   +P+L ALV HY      +  D L   L  P
Sbjct: 78  YISPRITFPTLQALVQHY-----SKKGDGLCQKLTLP 109

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.0 bits (150), Expect = 5e-14
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 15/100 (15%)

Query: 49  RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIVCSGAP------KHCLVYETERGFG 100
            +SR +AE LL     +G F++R S T G Y +S+            KH  + ET     
Sbjct: 12  SISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKHYHIKETNDSPK 71

Query: 101 FAEPFN--IYPSLGALVLHYAANSLEEHNDDLKTTLAYPV 138
                   ++ S+  L+ ++     + +   L T L YPV
Sbjct: 72  RYYVAEKYVFDSIPLLIQYH-----QYNGGGLVTRLRYPV 106

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]} Length = 131

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 61.1 bits (148), Expect = 2e-13
 Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 5/82 (6%)

Query: 49  RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVC---SGAPKHCLVYETERGFGFAE 103
            M R +    L  +  GTF+IR S    GQ+ ++ +        KH LV   +       
Sbjct: 15  YMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDTAAAKKT 74

Query: 104 PFNIYPSLGALVLHYAANSLEE 125
             +        V          
Sbjct: 75  FPDFLSEHSQFVNLLQWTKDTN 96

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (138), Expect = 6e-12
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 14/82 (17%)

Query: 50  MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 106
           +S+ +  A+LS +P GTFL+R S +   G    + V         +          EP+ 
Sbjct: 14  ISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQS-------VEPYT 66

Query: 107 I----YPSLGALVLHYAANSLE 124
                  S   +++ Y      
Sbjct: 67  KQQLNNMSFAEIIMGYKIMDAT 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	148
d1opka2	101	Abl tyrosine kinase {Mouse (Mus musculus) [TaxId:	99.97
d1qada_	107	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.97
d1rjaa_	100	Tyrosine-protein kinase 6 (Breast tumor kinase, Br	99.96
d1a81a2	125	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.96
d1jwoa_	97	Csk homologous kinase Chk {Human (Homo sapiens) [T	99.96
d1a81a1	129	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.96
d1k9aa2	101	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.96
d2oq1a2	124	Tyrosine-protein kinase zap-70 {Human (Homo sapien	99.96
d1lkka_	105	p56-lck tyrosine kinase {Human (Homo sapiens) [Tax	99.96
d1nrva_	105	Growth factor receptor-bound protein 10, GRB10 {Hu	99.96
d2oq1a1	130	Tyrosine-protein kinase zap-70 {Human (Homo sapien	99.96
d2shpa2	109	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.95
d1qcfa2	103	Hemopoetic cell kinase Hck {Human (Homo sapiens) [	99.95
d1o48a_	106	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.95
d2fcia1	105	Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId:	99.95
d1i3za_	103	Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus	99.95
d1mila_	104	Shc adaptor protein {Human (Homo sapiens) [TaxId:	99.95
d1d4ta_	104	The Xlp protein Sap {Human (Homo sapiens) [TaxId:	99.95
d1blja_	114	P55 Blk protein tyrosine kinase {Mouse (Mus muscul	99.95
d2qmsa1	113	Growth factor receptor-bound protein 7 {Human (Hom	99.95
d1g83a2	104	Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId:	99.94
d1luia_	108	Itk/tsk protein tyrosine kinase {Mouse (Mus muscul	99.94
d2cs0a1	106	Hematopoietic SH2 domain containing protein HSH2D	99.94
d1r1qa_	97	GRB2-related adaptor protein 2 (MONA, GRID) {Mouse	99.93
d1fu6a_	111	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.93
d2izva2	112	Suppressor of cytokine signaling 4, SOCS-4 {Human	99.93
d1jyra_	96	Growth factor receptor-bound protein 2 (GRB2) {Hum	99.93
d2eyva1	109	Crk proto-oncogen {Human (Homo sapiens) [TaxId: 96	99.92
d2shpa3	108	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.91
d1rpya_	86	Adaptor protein Aps {Rat (Rattus norvegicus) [TaxI	99.9
d2c9wa2	103	Suppressor of cytokine signaling 2, SOCS-2 {Human	99.9
d1xa6a2	141	Beta-chimaerin, N-terminal domain {Human (Homo sap	99.85
d1uura3	131	STAT homologue {Dictyostelium discoideum [TaxId: 4	99.53
d1bg1a3	141	STAT3b {Mouse (Mus musculus) [TaxId: 10090]}	99.46
d1bf5a3	142	STAT-1 {Human (Homo sapiens) [TaxId: 9606]}	97.46
d3buxb3	88	Cbl {Human (Homo sapiens) [TaxId: 9606]}	88.9

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=7.6e-31  Score=172.88  Aligned_cols=97  Identities=31%  Similarity=0.457  Sum_probs=89.8

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      ++.++||| .|+|++||.+|++.++|+||||+|  .+|.|+||++.+++++||+|....+|.+++.+...|+||.+||+|
T Consensus         2 Le~~~Wy~g~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LI~~   81 (101)
T d1opka2           2 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHH   81 (101)
T ss_dssp             GGGSTTEEEECCHHHHHHHGGGCCTTEEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSTTSCBSSHHHHHHH
T ss_pred             cccCcccCCCCCHHHHHHHhcCCCCCeEEEEecCCCCCCEEEEEEcCcceEEEEeEECCCCCEEeCCCcccCCHHHHHHH
Confidence            57789999 999999999999889999999999  788999999999999999999988888888777889999999999


Q ss_pred             HhhCCccccCCCccceecccccCCC
Q psy8554         118 YAANSLEEHNDDLKTTLAYPVFAPA  142 (148)
Q Consensus       118 y~~~~l~~~~~~l~~~L~~Pv~~~~  142 (148)
                      |+.++     +++.++|+.||+|++
T Consensus        82 y~~~~-----~~l~~~L~~P~pr~~  101 (101)
T d1opka2          82 HSTVA-----DGLITTLHYPAPKRN  101 (101)
T ss_dssp             HTTCC-----TTSSSCCCEECCCCS
T ss_pred             HhhCC-----CCCceECCCccCCCC
Confidence            99986     789999999998753

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.7e-30  Score=172.79  Aligned_cols=104  Identities=59%  Similarity=1.027  Sum_probs=94.7

Q ss_pred             CCCCCCccccccc-cCCHHHHHHHhcCCCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHH
Q psy8554          36 RDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGA  113 (148)
Q Consensus        36 ~~~~~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~e  113 (148)
                      +++|+++.++||| .|+|++||++|++.++|+||||.| .+|.|+||++.+++++||+|...++|+++.+....|+||.+
T Consensus         1 e~~p~~~~~~Wy~g~isR~eAe~lL~~~~~G~FLVR~S~~~~~y~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~   80 (107)
T d1qada_           1 EDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLKE   80 (107)
T ss_dssp             CCCGGGSGGGTEEEECCHHHHHHHHTTCCTTEEEEEEC---CCEEEEEEETTEEEEEEEEEETTEEESSTTCCCBSSHHH
T ss_pred             CCCCccCCCcccCCCCCHHHHHHHHcCCCCCcEEEEecCCCCCEEEEEEecCCeEEEEEEECCCCeEEcCCCCccCCHHH
Confidence            3567888899999 999999999999899999999999 88999999999999999999999888888777778999999


Q ss_pred             HHHHHhhCCccccCCCccceeccccc
Q psy8554         114 LVLHYAANSLEEHNDDLKTTLAYPVF  139 (148)
Q Consensus       114 LI~~y~~~~l~~~~~~l~~~L~~Pv~  139 (148)
                      ||+||++++|...+.++.++|++|+-
T Consensus        81 LI~~Y~~~~l~~~~~~l~~~L~~Pv~  106 (107)
T d1qada_          81 LVLHYQHTSLVQHNDSLNVTLAYPVY  106 (107)
T ss_dssp             HHHHHHHSCGGGTCTTCCCCCCEETT
T ss_pred             HHHHHHhCccccccCCCceEcccccc
Confidence            99999999999888999999999984

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.8e-30  Score=168.76  Aligned_cols=94  Identities=28%  Similarity=0.319  Sum_probs=85.0

Q ss_pred             cccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          43 EKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        43 ~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      +++||| .|+|++||++|..  .++|+||||+|  .+|.|+||++.+++++||+|.++.+|.|++++...|+||.+||+|
T Consensus         1 sepWy~g~isR~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~   80 (100)
T d1rjaa_           1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNY   80 (100)
T ss_dssp             CCCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECSSSCEEEETTEEESSHHHHHHH
T ss_pred             CCCCcCCCCCHHHHHHHHhccCCCCCeEEeecCCCCCCCEEEEEEcCCCceEEEEEECCCCCEEecCCCccCCHHHHHHH
Confidence            468999 9999999999963  58999999999  788999999999999999999988887877666789999999999


Q ss_pred             HhhCCccccCCCccceecccccCC
Q psy8554         118 YAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       118 y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      |+.++     .++.++|+.||+|+
T Consensus        81 y~~~~-----~~~~~~L~~Pc~~~   99 (100)
T d1rjaa_          81 HRAQS-----LSHGLRLAAPCRKH   99 (100)
T ss_dssp             HHHCC-----TTSSSCCCSBCCCC
T ss_pred             HhhCC-----CCCccCcCeecCCC
Confidence            99997     67889999999875

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-29  Score=172.32  Aligned_cols=95  Identities=27%  Similarity=0.489  Sum_probs=87.2

Q ss_pred             Cccccccc-cCCHHHHHHHh--cCCCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALL--SGRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL--~~~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      ++.++||| .|+|++||++|  .+.++|+||||.| .+|.|+||++.+++++||+|.+.++|.|++++...|+||.+||+
T Consensus        26 he~~pWyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~~yvLSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sL~~LI~  105 (125)
T d1a81a2          26 HEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVE  105 (125)
T ss_dssp             GGGSTTEEEECCHHHHHHHHHSSCCCTTCEEEEECSSSSCEEEEEEETTEEEEEEEEECTTSCEECTTSCCBSCHHHHHH
T ss_pred             cccCCccCCCCCHHHHHHHHHhcCCCCceEEEEecCCCCCEEEEeeccccceeEeeeEcCCCcEeccCCcccCCHHHHHH
Confidence            56778999 99999999999  4578999999999 88999999999999999999998888888877678999999999


Q ss_pred             HHhhCCccccCCCccceecccccC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      ||+.++     +||.|+|+.||+|
T Consensus       106 ~y~~~~-----~gL~~~L~~P~~k  124 (125)
T d1a81a2         106 HYSYKA-----DGLLRVLTVPCQK  124 (125)
T ss_dssp             HHTTCC-----TTSSSCCCCBCCC
T ss_pred             HHhhCC-----CCCCccCCeeCCC
Confidence            999886     8899999999986

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-29  Score=166.23  Aligned_cols=93  Identities=25%  Similarity=0.368  Sum_probs=83.5

Q ss_pred             ccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHH
Q psy8554          42 DEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY  118 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y  118 (148)
                      +-.|||| .|+|++||++|++..+|+||||+|  .+|.|+||++.++.++||+|...+ |.+++.+...|+||.+||+||
T Consensus         2 s~~PWy~g~isR~eAe~~L~~~~~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~~~~-~~~~~~~~~~F~sl~~LI~~y   80 (97)
T d1jwoa_           2 SLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRD-GHLTIDEAVFFCNLMDMVEHY   80 (97)
T ss_dssp             TTCTTEEESCCHHHHHHHTCSCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEESS-SEESSTTSCCBSCHHHHHHHH
T ss_pred             CcCCccCCCCCHHHHHHHhcCCCCCeEEEEecCCCCccEEEEEEecCceEEEEEEEcC-CcEEecCCcccCCHHHHHHHH
Confidence            4569999 999999999999899999999999  788999999999999999998765 456555567899999999999


Q ss_pred             hhCCccccCCCccceecccccC
Q psy8554         119 AANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       119 ~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      ++++     ++++++|+.||+|
T Consensus        81 ~~~~-----~~L~~~L~~P~~k   97 (97)
T d1jwoa_          81 SKDK-----GAICTKLVRPKRK   97 (97)
T ss_dssp             HHCC-----TTSSSCCCCBCCC
T ss_pred             hhCC-----CCCCccCCccCcC
Confidence            9986     8899999999976

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.8e-29  Score=170.74  Aligned_cols=97  Identities=24%  Similarity=0.280  Sum_probs=87.3

Q ss_pred             ccccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          42 DEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      ...|||| .|+|++||++|..  .++|+||||+|  .+|.|+||++.++.++||+|.+..+|.|+++....|+||.+||+
T Consensus         3 ~~~PWyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~i~~~~~F~sl~eLV~   82 (129)
T d1a81a1           3 NHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADLCH   82 (129)
T ss_dssp             TSSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHHH
T ss_pred             CCCCcccCCCCHHHHHHHHHhcCCCCccEEEEccCCCCcceEEEeeecccceEEEEEEcCCCCeeecCCcccCCHHHHHH
Confidence            3469999 9999999999953  58999999999  78999999999999999999998888888877788999999999


Q ss_pred             HHhhCCccccCCCccceecccccCCCC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFAPAS  143 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~~~p  143 (148)
                      ||+.++     +|+.|.|+.||.++.+
T Consensus        83 ~Y~~~~-----~gl~~~L~~P~~~~~~  104 (129)
T d1a81a1          83 YHSQES-----DGLVCLLKKPFNRPQG  104 (129)
T ss_dssp             HHTTCC-----TTSSSCCCEECCCCSS
T ss_pred             HHhhCC-----CCCcccCCCCCCCCCC
Confidence            999986     8999999999987544

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-29  Score=165.60  Aligned_cols=94  Identities=30%  Similarity=0.498  Sum_probs=84.0

Q ss_pred             ccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHH
Q psy8554          42 DEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY  118 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y  118 (148)
                      +..|||| .|+|++||++|++.++|+||||+|  .+|.|+||++.+++++||+|..+++++++ .....|+||.+||+||
T Consensus         2 ~~~PWy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~-~~~~~F~sl~~LV~~y   80 (101)
T d1k9aa2           2 SLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSI-DEEVYFENLMQLVEHY   80 (101)
T ss_dssp             ESCTTBCTTCCHHHHHHHTCSCCTTEEEEEECSSSTTSEEEEEECSSSEEEEEEEEETTEEES-SSSSCBSSHHHHHHHH
T ss_pred             CcCCccCCCCCHHHHHHHHcCCCCCCEEEeccCCCCCCEEEEEEeCCccEEEEEEEcCCCcee-cCCcccCCHHHHHHHH
Confidence            3468999 999999999998889999999999  78899999999999999999987666544 4457899999999999


Q ss_pred             hhCCccccCCCccceecccccCC
Q psy8554         119 AANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       119 ~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      ++++     +|+.++|+.||+++
T Consensus        81 ~~~~-----~gl~~~L~~P~~~~   98 (101)
T d1k9aa2          81 TTDA-----DGLCTRLIKPKVME   98 (101)
T ss_dssp             HHCC-----TTSSSCCCEECCCT
T ss_pred             hhCC-----CCCceeCCccccCC
Confidence            9987     88999999999874

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.7e-29  Score=169.83  Aligned_cols=94  Identities=28%  Similarity=0.400  Sum_probs=86.3

Q ss_pred             Cccccccc-cCCHHHHHHHhcC--CCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      ++.++||| .|+|++||++|..  .++|+||||.| .+|.|+||++.+++++||+|.++.+|.|+++....|+||.+||+
T Consensus        26 ~e~~pWyhg~isR~eAe~lL~~~~~~dGtFLVR~S~~~g~yvLSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~  105 (124)
T d2oq1a2          26 HERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVE  105 (124)
T ss_dssp             GGGSTTBCSSCCHHHHHHHHHSSCCCTTEEEEEECSSTTEEEEEEEETTEEEEEEEEECTTSCEESTTSCCBSSHHHHHH
T ss_pred             ccCCCCccCCCCHHHHHHHHhhcCCCCceEEeEecCCCCCEEEEeecCCceEEEEEEECCCCCEEeCCCcccCCHHHHHH
Confidence            45679999 9999999999954  58899999999 88999999999999999999998888888877788999999999


Q ss_pred             HHhhCCccccCCCccceeccccc
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVF  139 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~  139 (148)
                      ||+.++     +||.++|+.||+
T Consensus       106 ~y~~~~-----~gL~~~L~~PcP  123 (124)
T d2oq1a2         106 YLKLKA-----DGLIYCLKEACP  123 (124)
T ss_dssp             HHHHCC-----TTSSSCCCSBCC
T ss_pred             HHhhCC-----CCCcccCCCcCc
Confidence            999986     899999999997

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.5e-29  Score=165.31  Aligned_cols=94  Identities=35%  Similarity=0.550  Sum_probs=84.0

Q ss_pred             Cccccccc-cCCHHHHHHHh--cCCCCceEEEEeC--CCCCEEEEEEeCC-----eeEEEEEEEeCCceEEecCCCCCCC
Q psy8554          41 HDEKTWLV-RMSRAQAEALL--SGRPDGTFLIRPS--TTGQYALSIVCSG-----APKHCLVYETERGFGFAEPFNIYPS  110 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL--~~~~~G~FLvR~s--~~~~~~Lsv~~~~-----~v~H~~I~~~~~g~~~~~~~~~F~s  110 (148)
                      ++.++||| .|+|++||++|  .+.++|+||||+|  .+|.|+||++..+     .++|++|...++|.+++.+...|+|
T Consensus         1 le~~pWy~g~isR~eAe~~L~~~~~~~GtFLVR~S~~~~g~~~lsv~~~~~~~~~~v~h~~i~~~~~~~~~~~~~~~F~s   80 (105)
T d1lkka_           1 LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPG   80 (105)
T ss_dssp             CCCCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSCBSS
T ss_pred             CccCCccCCCCCHHHHHHHHHhcCCCCCcEEEEccCCCCCCEEEEEEEcccCCCccEEEEEEEEcCCCCEEecCCcccCC
Confidence            36789999 99999999999  4578999999999  7889999998743     3899999998888888877788999


Q ss_pred             HHHHHHHHhhCCccccCCCccceeccccc
Q psy8554         111 LGALVLHYAANSLEEHNDDLKTTLAYPVF  139 (148)
Q Consensus       111 l~eLI~~y~~~~l~~~~~~l~~~L~~Pv~  139 (148)
                      |.+||+||++++     +||.++|+.||+
T Consensus        81 l~~LV~~y~~~~-----~gL~~~L~~Pcp  104 (105)
T d1lkka_          81 LHELVRHYTNAS-----DGLCTRLSRPCQ  104 (105)
T ss_dssp             HHHHHHHHHHCC-----TTSSSCCCSBCC
T ss_pred             HHHHHHHHhhCC-----CCCCccCCCcCC
Confidence            999999999997     889999999996

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=163.55  Aligned_cols=95  Identities=24%  Similarity=0.369  Sum_probs=80.3

Q ss_pred             Cccccccc-cCCHHHHHHHhc--CCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCc---eEEec-CCCCCCCH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERG---FGFAE-PFNIYPSL  111 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~--~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g---~~~~~-~~~~F~sl  111 (148)
                      +++++||| .|+|++||++|.  +.++|+||||+|  .+|.|+||++.+++++||+|...+++   .+.+. ....|+||
T Consensus         2 h~~~~Wyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~F~sl   81 (105)
T d1nrva_           2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDL   81 (105)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC-----CCEESSTTSSCBSSH
T ss_pred             CccCcccCCCCCHHHHHHHHhhcCCCCceEEEEeCCCCCCCEEEEEEECCceeEEEEEEecCCCeEEEEECCCCcccCCH
Confidence            46789999 999999999994  468999999999  78899999999999999999886543   23333 34679999


Q ss_pred             HHHHHHHhhCCccccCCCccceecccccC
Q psy8554         112 GALVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       112 ~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      .+||+||+.++     ++|.++|+.||+|
T Consensus        82 ~~LV~~y~~~~-----~~L~~~L~~Pc~r  105 (105)
T d1nrva_          82 IQLVDFYQLNK-----GVLPCKLKHHCIR  105 (105)
T ss_dssp             HHHHHHHTTCC-----TTSSSCCCEECCC
T ss_pred             HHHHHHhccCc-----CCCCccCCcCCCC
Confidence            99999999986     7899999999975

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-28  Score=168.81  Aligned_cols=97  Identities=27%  Similarity=0.329  Sum_probs=87.7

Q ss_pred             ccccccc-cCCHHHHHHHhc--CCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          42 DEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL~--~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      +..+||| .|+|++||++|+  ++++|+||||+|  .+|.|+||++.++.++||+|.+..+|.|++.+...|+||.+||+
T Consensus         4 ~~~pWy~g~i~R~~Ae~~L~~~g~~~G~FLVR~S~~~~g~yvLSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~Lv~   83 (130)
T d2oq1a1           4 AHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELCE   83 (130)
T ss_dssp             TTCTTBCBSCCHHHHHHHHHHTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHHH
T ss_pred             cCCCCccCCCCHHHHHHHHHhcCCCCceEEEEecCCCCccEEEEEeeCCceEEEEEEEcCCCceeccCCCCcCCHHHHHH
Confidence            4458999 999999999995  358999999999  88899999999999999999988888888877678999999999


Q ss_pred             HHhhCCccccCCCccceecccccCCCC
Q psy8554         117 HYAANSLEEHNDDLKTTLAYPVFAPAS  143 (148)
Q Consensus       117 ~y~~~~l~~~~~~l~~~L~~Pv~~~~p  143 (148)
                      ||+.++     +||+++|+.||+++.+
T Consensus        84 ~Y~~~~-----~gL~~~L~~P~~r~~~  105 (130)
T d2oq1a1          84 FYSRDP-----DGLPCNLRKPCNRPSG  105 (130)
T ss_dssp             HHHHCC-----TTSSSCCCSBCCCCTT
T ss_pred             HHhhCC-----CCCCccCCccCCCCCC
Confidence            999987     8999999999998654

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-28  Score=163.24  Aligned_cols=102  Identities=25%  Similarity=0.394  Sum_probs=87.4

Q ss_pred             cccccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHH
Q psy8554          43 EKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY  118 (148)
Q Consensus        43 ~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y  118 (148)
                      +++||| .|+|++||++|.. ..+|+||||+|  .+|.|+||++.+++++|++|...++++++.+ ...|+||.+||+||
T Consensus         2 ~~~Wy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~-~~~F~sl~~LV~~y   80 (109)
T d2shpa2           2 SRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYG-GEKFATLAELVQYY   80 (109)
T ss_dssp             CSTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEECSSSCEEETT-SCEESSHHHHHHHH
T ss_pred             CCccccCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCcEEEEEEEEcCCeEEEcC-CcccCCHHHHHHHH
Confidence            578999 9999999999954 46899999999  7899999999999999999988766555544 47899999999999


Q ss_pred             hhCCccc-cCCCccceecccccCCCCCC
Q psy8554         119 AANSLEE-HNDDLKTTLAYPVFAPASGM  145 (148)
Q Consensus       119 ~~~~l~~-~~~~l~~~L~~Pv~~~~p~~  145 (148)
                      +.+++.. .+.++.+.|++|++++.|..
T Consensus        81 ~~~~~~~~~~~~~~~~L~~P~~~~~Pss  108 (109)
T d2shpa2          81 MEHHGQLKEKNGDVIELKYPLNCADPTS  108 (109)
T ss_dssp             HTCTTCSBSSSSCBCCCCEECCCCCCTT
T ss_pred             HHCCCCcccCCCCeeeccccCCCCCCCC
Confidence            9988654 35678899999999888864

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.1e-28  Score=161.47  Aligned_cols=92  Identities=33%  Similarity=0.536  Sum_probs=83.1

Q ss_pred             ccccc-cCCHHHHHHHh--cCCCCceEEEEeC--CCCCEEEEEEe-----CCeeEEEEEEEeCCceEEecCCCCCCCHHH
Q psy8554          44 KTWLV-RMSRAQAEALL--SGRPDGTFLIRPS--TTGQYALSIVC-----SGAPKHCLVYETERGFGFAEPFNIYPSLGA  113 (148)
Q Consensus        44 ~~Wyh-~isr~~Ae~lL--~~~~~G~FLvR~s--~~~~~~Lsv~~-----~~~v~H~~I~~~~~g~~~~~~~~~F~sl~e  113 (148)
                      ++||| .|+|++||++|  .+.++|+||||+|  .+|.|+||++.     ++.++|++|...++|.+++.....|+||.|
T Consensus         1 e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~H~~i~~~~~g~~~~~~~~~F~sl~~   80 (103)
T d1qcfa2           1 EEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQE   80 (103)
T ss_dssp             STTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECTTSCEESSSSSCBSSHHH
T ss_pred             CCccCCCCCHHHHHHHHhhcCCCCCcEEEEccCCCCCCeEEEEEecCCCcCceEEEEEEEEcCCCceeecCCcccCCHHH
Confidence            47999 99999999999  4468999999999  78999999985     468999999998888888877778999999


Q ss_pred             HHHHHhhCCccccCCCccceecccccC
Q psy8554         114 LVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       114 LI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      ||+||+.++     +||.++|+.||++
T Consensus        81 LV~~y~~~~-----~gL~~~L~~PC~~  102 (103)
T d1qcfa2          81 LVDHYKKGN-----DGLCQKLSVPCMS  102 (103)
T ss_dssp             HHHHHTSSC-----TTSSSCCCSBCCC
T ss_pred             HHHHHhhCC-----CCCCccCCccCCC
Confidence            999999986     8899999999986

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.4e-28  Score=162.09  Aligned_cols=94  Identities=30%  Similarity=0.428  Sum_probs=83.9

Q ss_pred             Cccccccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeC-----CeeEEEEEEEeCCceEEecCCCCCCC
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCS-----GAPKHCLVYETERGFGFAEPFNIYPS  110 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~-----~~v~H~~I~~~~~g~~~~~~~~~F~s  110 (148)
                      ++.++||| .|+|++||++|..  .++|+||||+|  .+|.|+||++..     ..++|++|.+.++|.+++.+...|+|
T Consensus         2 l~~~~Wy~g~i~R~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~i~h~~i~~~~~g~~~~~~~~~F~s   81 (106)
T d1o48a_           2 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNS   81 (106)
T ss_dssp             GGGSTTEEESCCHHHHHHHHCCTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSEESS
T ss_pred             cccCCccCCCCCHHHHHHHHHhcCCCCCcEEEEcccCCCCCEEEEEEecccCcccceEEEEEEEecCCCEEEcCCeeECC
Confidence            57789999 9999999999953  68999999999  889999999864     35889999988888888877778999


Q ss_pred             HHHHHHHHhhCCccccCCCccceeccccc
Q psy8554         111 LGALVLHYAANSLEEHNDDLKTTLAYPVF  139 (148)
Q Consensus       111 l~eLI~~y~~~~l~~~~~~l~~~L~~Pv~  139 (148)
                      |.|||+||++++     +||.++|+.||+
T Consensus        82 l~eLV~~y~~~~-----~gL~~~L~~pcP  105 (106)
T d1o48a_          82 LQQLVAYYSKHA-----DGLCHRLTTVCP  105 (106)
T ss_dssp             HHHHHHHHTTCC-----TTSSSCCCSBCC
T ss_pred             HHHHHHHHhhCC-----CCCCccCCCcCC
Confidence            999999999987     889999999997

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1e-28  Score=163.68  Aligned_cols=97  Identities=32%  Similarity=0.475  Sum_probs=84.7

Q ss_pred             Cccccccc-cCCHHHHHHHhcCC-CCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGR-PDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~-~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      ++.++||| .|+|++||++|.+. .+|+||||.| .+|.|+||++.+++++||+|..+ ++.+..+. ..|.||.+||+|
T Consensus         6 he~~~Wy~g~i~R~eAe~lL~~~~~~G~FLVR~S~~~~~yvLSv~~~~~v~H~~I~~~-~~~~~~~~-~~F~sl~~LV~~   83 (105)
T d2fcia1           6 HESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQE-GQTVMLGN-SEFDSLVDLISY   83 (105)
T ss_dssp             TSSSCCCCSSSCSHHHHHHHHHSSSSCCEEEEECSSTTCEEEEEEETTEECCCEEBCC-SSCEECSS-SEESTTHHHHHH
T ss_pred             cccCCCccCCCCHHHHHHHHHhCCCCCeEEEEecCCCCCEEEEEEeccccEEEEEEec-CCeEecCC-cccCCHHHHHHH
Confidence            56779999 99999999999654 5899999999 88999999999999999999764 44555554 689999999999


Q ss_pred             HhhCCccccCCCccceecccccCCCCC
Q psy8554         118 YAANSLEEHNDDLKTTLAYPVFAPASG  144 (148)
Q Consensus       118 y~~~~l~~~~~~l~~~L~~Pv~~~~p~  144 (148)
                      |++++     .++.++|++||+++.|.
T Consensus        84 y~~~~-----~~~~~~L~~P~~~~~ps  105 (105)
T d2fcia1          84 YEKHP-----LYRKMKLRYPINEENSS  105 (105)
T ss_dssp             HHHSC-----CSTTCSSCCCCCCTTTC
T ss_pred             HhhCC-----CCCccCCCCCCCCCCCC
Confidence            99997     66789999999998874

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.2e-28  Score=160.71  Aligned_cols=92  Identities=27%  Similarity=0.465  Sum_probs=80.9

Q ss_pred             ccccc-cCCHHHHHHHh-cCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecC-----CCCCCCHHHH
Q psy8554          44 KTWLV-RMSRAQAEALL-SGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEP-----FNIYPSLGAL  114 (148)
Q Consensus        44 ~~Wyh-~isr~~Ae~lL-~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~-----~~~F~sl~eL  114 (148)
                      .|||| .|+|++||++| ++.++|+||||+|  .+|.|+||++.++.++||+|.+..+|.+++..     ...|+||.+|
T Consensus         3 ~PWy~g~isR~~AE~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~~~~~~F~sl~~L   82 (103)
T d1i3za_           3 LPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIFPNLQEL   82 (103)
T ss_dssp             CTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECTTSCEEECBCTTSCCCEESSSHHH
T ss_pred             CCcccCCCCHHHHHHHHHhCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEeEEcCCCcEEEeccCCcCccccCCHHHH
Confidence            58999 99999999999 4578999999999  88999999999999999999988888776532     2469999999


Q ss_pred             HHHHhhCCccccCCCccceecccccC
Q psy8554         115 VLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       115 I~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      |+||++++     +|+.+.|+.||.|
T Consensus        83 V~~y~~~~-----~gl~~~L~~P~~R  103 (103)
T d1i3za_          83 VSKYGKPG-----QGLVVHLSNPIMR  103 (103)
T ss_dssp             HHHTTSSS-----SSSSSCCCEECC-
T ss_pred             HHHhhhCC-----CCCeEeCCccccC
Confidence            99999886     8899999999975

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.4e-28  Score=161.57  Aligned_cols=97  Identities=33%  Similarity=0.472  Sum_probs=86.5

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      +++++||| .|+|++||++|+  ++|+||||.|  .+|.|+||++.++.++||+|.. .+|.|+.++ ..|+||.|||+|
T Consensus         4 l~~~pWyhG~i~R~~Ae~lL~--~~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~~-~~~~~~~~~-~~F~sl~~LV~~   79 (104)
T d1mila_           4 LRGEPWFHGKLSRREAEALLQ--LNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVD-PEGVVRTKD-HRFESVSHLISY   79 (104)
T ss_dssp             TTTCTTBCSSCCHHHHHTTCC--STTEEEEEECCSSCSSEEEEEEETTEEEEEEEBC-TTSSEECSS-CEESSHHHHHHH
T ss_pred             cccCCCcCCCCCHHHHHHHHh--cCCcEEEEecCCCCCCEEEEEEEccccceEEEEe-CCCEEEeCC-eeECCHHHHHHH
Confidence            47889999 999999999996  7999999999  8889999999999999999965 456666664 689999999999


Q ss_pred             HhhCCccccCCCccceecccccCC
Q psy8554         118 YAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       118 y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      |+.++++..+.++.+.|++|+.|+
T Consensus        80 y~~~~~~~~~~~~~~~L~~Pi~R~  103 (104)
T d1mila_          80 HMDNHLPIISAGSELCLQQPVERK  103 (104)
T ss_dssp             HHHHTCCEEETTEEECCCEECCCC
T ss_pred             HhhCCCCcccCCcceEeCCCcCCc
Confidence            999998877788899999999875

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.9e-28  Score=158.54  Aligned_cols=95  Identities=27%  Similarity=0.377  Sum_probs=83.5

Q ss_pred             Cccccccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEec-----CCCCCCCH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAE-----PFNIYPSL  111 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~-----~~~~F~sl  111 (148)
                      +++.+||| .|+|++||++|+. ..+|+||||+|  .+|.|+||++.++.++||+|.+.++|.++..     ....|+||
T Consensus         1 le~~pwyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~F~sl   80 (104)
T d1d4ta_           1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKI   80 (104)
T ss_dssp             CTTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEECBCTTSCCCCBSSH
T ss_pred             CCcCCccccCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEecCCCceEEEEEEcCCCcEEEeeccCCCCcccCCH
Confidence            36789999 9999999999954 56899999999  7889999999999999999999888876642     23679999


Q ss_pred             HHHHHHHhhCCccccCCCccceecccccC
Q psy8554         112 GALVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       112 ~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      .+||+||+++.     .|+.+.|++||+|
T Consensus        81 ~~Li~~y~~~~-----~gl~~~L~~P~~r  104 (104)
T d1d4ta_          81 KNLISAFQKPD-----QGIVIPLQYPVEK  104 (104)
T ss_dssp             HHHHHHHTSSS-----SSSSSCCCEECCC
T ss_pred             HHHHHHHhhCC-----CCCcEeCCccccC
Confidence            99999999886     8899999999976

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.9e-28  Score=163.60  Aligned_cols=96  Identities=31%  Similarity=0.502  Sum_probs=84.9

Q ss_pred             CCccccccc-cCCHHHHHHHhc--CCCCceEEEEeC--CCCCEEEEEEe----CCeeEEEEEEEeCCceEEecCCCCCCC
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPS--TTGQYALSIVC----SGAPKHCLVYETERGFGFAEPFNIYPS  110 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~--~~~~G~FLvR~s--~~~~~~Lsv~~----~~~v~H~~I~~~~~g~~~~~~~~~F~s  110 (148)
                      .++.++||| .|+|++||++|.  +.++|+||||+|  .+|.|+||++.    ++.++||+|.+.++|.|+++....|+|
T Consensus         8 ~l~~e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~v~H~~i~~~~~g~~~l~~~~~F~s   87 (114)
T d1blja_           8 TLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITFPT   87 (114)
T ss_dssp             CSCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETTTEEEEETTEEESS
T ss_pred             ccccCCCcCCCCCHHHHHHHHHhcCCCCceEEEeccCCCCCCeEEEEEeeccCCCEEEEEEEEEcCCCCEEecCCceECC
Confidence            457789999 999999999883  468999999999  78999999985    356899999998888888877678999


Q ss_pred             HHHHHHHHhhCCccccCCCccceecccccC
Q psy8554         111 LGALVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       111 l~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      |.|||+||++++     +||.++|+.||++
T Consensus        88 l~eLV~~y~~~~-----~gL~~~L~~PC~~  112 (114)
T d1blja_          88 LQALVQHYSKKG-----DGLCQKLTLPCVN  112 (114)
T ss_dssp             HHHHHHHHHHCC-----SSSSSCCCCCSCC
T ss_pred             HHHHHHHHhhCC-----CCCCccCCccCcC
Confidence            999999999997     8899999999976

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-27  Score=160.47  Aligned_cols=96  Identities=26%  Similarity=0.346  Sum_probs=81.5

Q ss_pred             Cccccccc-cCCHHHHHHHhc--CCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCc---eEEecC-CCCCCCH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERG---FGFAEP-FNIYPSL  111 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~--~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g---~~~~~~-~~~F~sl  111 (148)
                      +..++||| .|+|++||++|.  +.++|+||||+|  .+|.|+||++.+++++||+|...+++   .+.+.+ ...|+||
T Consensus         7 h~~~~Wy~g~isR~~Ae~lL~~~g~~dG~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~F~sl   86 (113)
T d2qmsa1           7 HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDL   86 (113)
T ss_dssp             TTCCTTEEEEBCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEEESSSCEEEESSTTSSCBSSH
T ss_pred             hcCCCccCCCCCHHHHHHHHhccCCCCccEEEEeccCCCCCEEEEEEeCCeEEEEEEEEeCCCCeEEEEecCCCcccCCH
Confidence            45679999 999999999995  468999999999  77899999999999999999875443   233333 3579999


Q ss_pred             HHHHHHHhhCCccccCCCccceecccccCC
Q psy8554         112 GALVLHYAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       112 ~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      .|||+||+.++     +++.++|+.||+|-
T Consensus        87 ~~LI~~y~~~~-----~~L~~~L~~pc~r~  111 (113)
T d2qmsa1          87 LQLVEFHQLNR-----GILPCLLRHCCTRV  111 (113)
T ss_dssp             HHHHHHHTTCC-----TTSSSCCCEECCSS
T ss_pred             HHHHHHhccCC-----CCCccccCCCCcCc
Confidence            99999999987     78999999999873

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-27  Score=157.21  Aligned_cols=92  Identities=34%  Similarity=0.545  Sum_probs=82.2

Q ss_pred             Cccccccc-cCCHHHHHHHhc--CCCCceEEEEeC--CCCCEEEEEEe-----CCeeEEEEEEEeCCceEEecCCCCCCC
Q psy8554          41 HDEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPS--TTGQYALSIVC-----SGAPKHCLVYETERGFGFAEPFNIYPS  110 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~--~~~~G~FLvR~s--~~~~~~Lsv~~-----~~~v~H~~I~~~~~g~~~~~~~~~F~s  110 (148)
                      ++.++||| .|+|++||++|.  +.++|+||||+|  .+|.|+||++.     ++.++|++|...++|.+++.....|+|
T Consensus         3 l~~~~Wy~g~i~R~eAe~~L~~~g~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~h~~i~~~~~g~~~~~~~~~F~s   82 (104)
T d1g83a2           3 IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFET   82 (104)
T ss_dssp             GGGSSSBCTTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTCEEEEEEEECSSSCEEEEEEEEEECTTSCEEETTTEEESS
T ss_pred             cccCCCcCCCCCHHHHHHHHHhcCCCCCcEEEeccCCCCCCeEEEEEEeecCcCCeEEEEEEEEcCCCCEEecCCcccCC
Confidence            57789999 999999999995  358999999999  78999999986     467999999998888888877778999


Q ss_pred             HHHHHHHHhhCCccccCCCccceeccc
Q psy8554         111 LGALVLHYAANSLEEHNDDLKTTLAYP  137 (148)
Q Consensus       111 l~eLI~~y~~~~l~~~~~~l~~~L~~P  137 (148)
                      |.+||+||+.++     +||.|+|+.|
T Consensus        83 l~~LV~~y~~~~-----~gL~~~L~~P  104 (104)
T d1g83a2          83 LQQLVQHYSERA-----AGLSSRLVVP  104 (104)
T ss_dssp             HHHHHHHHHHCC-----TTSSSCCCCC
T ss_pred             HHHHHHHHhhCC-----CCCceeCCCC
Confidence            999999999987     7899999987

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.4e-27  Score=156.44  Aligned_cols=94  Identities=30%  Similarity=0.447  Sum_probs=81.8

Q ss_pred             Cccccccc-cCCHHHHHHHhc-CCCCceEEEEeC-CCCCEEEEEEeC------CeeEEEEEEEeCCc--eEEecCCCCCC
Q psy8554          41 HDEKTWLV-RMSRAQAEALLS-GRPDGTFLIRPS-TTGQYALSIVCS------GAPKHCLVYETERG--FGFAEPFNIYP  109 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~-~~~~G~FLvR~s-~~~~~~Lsv~~~------~~v~H~~I~~~~~g--~~~~~~~~~F~  109 (148)
                      ++.++||| .|+|++||++|. ..++|+||||+| .+|.|+||++..      +.++||+|....+|  .+++.....|+
T Consensus         3 l~~~~Wy~g~isR~eAe~lL~~~~~~G~FLVR~S~~~g~y~LSv~~~~~~~~~~~i~h~~I~~~~~~~~~~~~~~~~~F~   82 (108)
T d1luia_           3 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYVAEKYVFD   82 (108)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHHCCTTEEEEEECCTTTCEEEEEECSCCTTTCSCEEEEECEECCCSSCCEESSSSCCBS
T ss_pred             cccCCCcCCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCEEEEEEecCCcccCCceeEEEEEEecCCCceeecCCCcccC
Confidence            57789999 999999999994 468899999999 899999999863      46899999886655  46666667899


Q ss_pred             CHHHHHHHHhhCCccccCCCccceeccccc
Q psy8554         110 SLGALVLHYAANSLEEHNDDLKTTLAYPVF  139 (148)
Q Consensus       110 sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~  139 (148)
                      ||.+||+||++++     +++.++|++||+
T Consensus        83 sl~~LV~~y~~~~-----~~L~~~L~~Pv~  107 (108)
T d1luia_          83 SIPLLIQYHQYNG-----GGLVTRLRYPVC  107 (108)
T ss_dssp             SHHHHHHHHHTTC-----CSSSSSSSEECC
T ss_pred             CHHHHHHHHhhCC-----CCCccCCCCcCC
Confidence            9999999999886     889999999986

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-26  Score=153.82  Aligned_cols=99  Identities=27%  Similarity=0.332  Sum_probs=86.4

Q ss_pred             CCCccccccc-cCCHHHHHHHhcCCCCceEEEEeC-CCCCEEEEEEeCCeeEEEEEEEeCCceEEec-CCCCCCCHHHHH
Q psy8554          39 PHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAE-PFNIYPSLGALV  115 (148)
Q Consensus        39 ~~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s-~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~-~~~~F~sl~eLI  115 (148)
                      .+....+||| .|+|++||++|+++++|+||||+| ....|+|+++.++.++|++|...++|.++.. ....|+||.|||
T Consensus         4 ~~~~~~pWy~g~isR~eAe~lL~~~~~G~FLvR~S~~~~~y~Lsv~~~~~~~h~~I~~~~~g~~~~~~~~~~F~sl~eLV   83 (106)
T d2cs0a1           4 AQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVGYTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALV   83 (106)
T ss_dssp             CSSSCCSSBCSSCCHHHHHHHHHTSCTTCEEEEECSSSSSEEEEECCSSSCEEEEEEECTTSCEECTTCSCCBSSHHHHH
T ss_pred             cCCCCCCCccCCCCHHHHHHHHcCCCCCcEEEEecCCCCCEEEEEEecCCceeEEEEEcCCCCEEEecCCccCCCHHHHH
Confidence            3445679999 999999999999889999999999 6666999999999999999999888877654 445799999999


Q ss_pred             HHHhhCCccccCCCccceecccccCC
Q psy8554         116 LHYAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       116 ~~y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      +||+++++    .++.+.|++||+++
T Consensus        84 ~~y~~~~~----~~~~~~L~~P~~~~  105 (106)
T d2cs0a1          84 TFHQQKPI----EPRRELLTQPCRQK  105 (106)
T ss_dssp             HHHTTSCC----SSCCCCCCSBCCCS
T ss_pred             HHHHHCCC----CCccCcccCcCCCC
Confidence            99999875    45778999999976

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.8e-26  Score=149.79  Aligned_cols=84  Identities=32%  Similarity=0.505  Sum_probs=77.4

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLH  117 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~  117 (148)
                      ++.++||| .|+|++||++|.++++|+||||.|  .+|.|+||++.++.++||+|.+..+|+++.++ +.|+||.+||+|
T Consensus         3 ~~~~~Wy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~-~~F~sl~~LV~~   81 (97)
T d1r1qa_           3 IEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWT-EKFPSLNKLVDY   81 (97)
T ss_dssp             CSCCTTBCTTCCHHHHHHHHHTSCTTCEEEEECSSSTTCEEEEEECSSSEEEEECEECTTCCEESSS-CCBSSHHHHHHH
T ss_pred             cccCCccCCCCCHHHHHHHHhcCCCCCEEEeecCCCCCCEEEEEEecCCeEEEEEEEcCCCeEEeCC-CCcCCHHHHHHH
Confidence            46779999 999999999999889999999999  78999999999999999999999888888775 689999999999


Q ss_pred             HhhCCccc
Q psy8554         118 YAANSLEE  125 (148)
Q Consensus       118 y~~~~l~~  125 (148)
                      |++++|..
T Consensus        82 y~~~~l~~   89 (97)
T d1r1qa_          82 YRTTSISK   89 (97)
T ss_dssp             TTTSCSCS
T ss_pred             HccCCcCC
Confidence            99998754

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.2e-27  Score=159.81  Aligned_cols=100  Identities=28%  Similarity=0.446  Sum_probs=88.1

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC---CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS---TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALV  115 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s---~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI  115 (148)
                      .++.++||| .|+|++||++|++.++|+||||.|   ..+.|+|+++.++.++|++|...+ |.|++.....|+||.+||
T Consensus         7 ~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~~ls~~~~~~~~H~~I~~~~-~~~~~~~~~~F~sl~~LV   85 (111)
T d1fu6a_           7 SLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRD-GKYGFSDPLTFNSVVELI   85 (111)
T ss_dssp             CCSCCSSCCSSCCSHHHHHHSSSCSSCCCCCBSSCCSSSCCSBCEEEETTEEEECCCCCTT-TCCCTTTTSCCCCTTHHH
T ss_pred             ccCcCcCCCCCCCHHHHHHHhCcCCCCEEEEEeccCCCCccEEEEEecCCceEEEEEEEcC-CeEEECCCcccCCHHHHH
Confidence            467889999 999999999998888999999998   346799999999999999998764 445555557899999999


Q ss_pred             HHHhhCCccccCCCccceecccccC
Q psy8554         116 LHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       116 ~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      +||+++++.....++.+.|++||.|
T Consensus        86 ~~y~~~~l~~~~~~l~~~L~~Pv~r  110 (111)
T d1fu6a_          86 NHYRNESLAQYNPKLDVKLLYPVSK  110 (111)
T ss_dssp             HHHHTTCSTTTCSSCCCCSCCCCCC
T ss_pred             HHHhhCcCCccCCCCccccCccccC
Confidence            9999999988778899999999976

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-26  Score=155.22  Aligned_cols=99  Identities=25%  Similarity=0.350  Sum_probs=82.1

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCC---CCCCCHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPF---NIYPSLGA  113 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~---~~F~sl~e  113 (148)
                      ++++++||| .|+|++||++|++.++|+||||+|  .++.|+||++.++.++|++|...++++.+....   ..|+||.+
T Consensus         7 ~l~~~~Wy~g~isR~~Ae~lL~~~~~GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~~~~l~~~~~~~~~F~sl~~   86 (112)
T d2izva2           7 QINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPDITG   86 (112)
T ss_dssp             HHHHCTTEEEECCHHHHHHHHTTCCTTEEEEEECSSTTCSEEEEEEETTEEEEEECEEETTEEESCTTCTTSCCBSSHHH
T ss_pred             HhccCCCcCCCCCHHHHHHHHccCCCCcEEEeecCCCCCCeEEEEEecCCceEEEEEEeCCeEEEeecccCcccCCCHHH
Confidence            457789999 999999999999889999999999  788999999999999999999876655543322   36999999


Q ss_pred             HHHHHhhCCccccCCCccceecccccCC
Q psy8554         114 LVLHYAANSLEEHNDDLKTTLAYPVFAP  141 (148)
Q Consensus       114 LI~~y~~~~l~~~~~~l~~~L~~Pv~~~  141 (148)
                      ||+||+.+++..   .....|+.||.|+
T Consensus        87 LV~~Y~~~~~~~---~~~~llt~P~~r~  111 (112)
T d2izva2          87 LLEHYKDPSACM---FFEPLLSTPLIRT  111 (112)
T ss_dssp             HHHHTCCGGGCC---TTSCCCCEECCCC
T ss_pred             HHHHHhcccccc---cCccccCCCCCCC
Confidence            999999887532   2245688898764

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.5e-26  Score=148.51  Aligned_cols=82  Identities=33%  Similarity=0.480  Sum_probs=74.2

Q ss_pred             cccccc-cCCHHHHHHHhc-CCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHHHH
Q psy8554          43 EKTWLV-RMSRAQAEALLS-GRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVLHY  118 (148)
Q Consensus        43 ~~~Wyh-~isr~~Ae~lL~-~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~~y  118 (148)
                      +.|||| .|+|++||++|. ++++|+||||+|  .+|.|+||++.+++++||+|.++.+|.|+.+. ..|+||.+||+||
T Consensus         2 s~pWy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~-~~F~sl~~LV~~y   80 (96)
T d1jyra_           2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV-VKFNSLNELVDYH   80 (96)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSS-CEESSHHHHHHHT
T ss_pred             CCCccCCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCceEEEEEEECCCCeEEeCC-ccCCCHHHHHHHH
Confidence            469999 999999999994 568999999999  77899999999999999999998888777765 6799999999999


Q ss_pred             hhCCccc
Q psy8554         119 AANSLEE  125 (148)
Q Consensus       119 ~~~~l~~  125 (148)
                      ++++|..
T Consensus        81 ~~~~l~~   87 (96)
T d1jyra_          81 RSTSVSR   87 (96)
T ss_dssp             TSSCSCS
T ss_pred             hhCCCCC
Confidence            9999764

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.1e-25  Score=146.67  Aligned_cols=90  Identities=33%  Similarity=0.476  Sum_probs=76.5

Q ss_pred             cccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEE----------------ecCC
Q psy8554          45 TWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGF----------------AEPF  105 (148)
Q Consensus        45 ~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~----------------~~~~  105 (148)
                      .||| .|+|++||++|+++++|+||||+|  .+|.|+||++.+++++||+|.+.+++...                ..++
T Consensus         1 sWy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~~~~~LS~~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (109)
T d2eyva1           1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGD   80 (109)
T ss_dssp             TSCCBCCCHHHHHHHCSSCSTTCEEEECCCSSSSCEEEEEEETTEEEEEEEECCCCSSCCCSSSSCCCCSCCCCCEEETT
T ss_pred             CCCCCCCCHHHHHHHhcCCCCCeEEeeecCCCCCCEEEEEEECCEEEEEEEEEcCCcceeeccccccccccccceEEeCC
Confidence            4999 999999999998889999999999  78999999999999999999987655322                2223


Q ss_pred             CCCCCHHHHHHHHhhCCccccCCCccceecccccC
Q psy8554         106 NIYPSLGALVLHYAANSLEEHNDDLKTTLAYPVFA  140 (148)
Q Consensus       106 ~~F~sl~eLI~~y~~~~l~~~~~~l~~~L~~Pv~~  140 (148)
                      ..|+||.+||+||+.+.+.      .+.|+.||+|
T Consensus        81 ~~F~sl~~LV~~y~~~~l~------~~~L~~P~~r  109 (109)
T d2eyva1          81 QEFDSLPALLEFYKIHYLD------TTTLIEPVSR  109 (109)
T ss_dssp             EEESSHHHHHHHSSSSCSS------SSCCCSBCCS
T ss_pred             eeeCCHHHHHHHHhhCcCC------CCccCCcCCC
Confidence            5799999999999998753      3579999975

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-24  Score=144.18  Aligned_cols=93  Identities=28%  Similarity=0.379  Sum_probs=79.7

Q ss_pred             cccc-cCCHHHHHHHhcC-CCCceEEEEeC--CCCCEEEEEEeC----------CeeEEEEEEEeCCceEEecCCCCCCC
Q psy8554          45 TWLV-RMSRAQAEALLSG-RPDGTFLIRPS--TTGQYALSIVCS----------GAPKHCLVYETERGFGFAEPFNIYPS  110 (148)
Q Consensus        45 ~Wyh-~isr~~Ae~lL~~-~~~G~FLvR~s--~~~~~~Lsv~~~----------~~v~H~~I~~~~~g~~~~~~~~~F~s  110 (148)
                      .||| .|+|++||++|++ .++|+||||+|  .+|.|+||++..          +.++|+.|...+++ +++.+...|+|
T Consensus         1 rWyhG~i~R~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~~~~~~~~h~~i~~~~~~-~~~~~~~~F~s   79 (108)
T d2shpa3           1 RWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELK-YDVGGGERFDS   79 (108)
T ss_dssp             TTBCCSCCHHHHHHHHHHTCCTTEEEEEECSSSTTCEEEEEEECC-----CCCCCEEEEEEEEEETTE-EESSSSCCBSS
T ss_pred             CCCcCCCCHHHHHHHHhhcCCCCeEEEEecCCCCCCeEEEEEecCccccccccccceeeEEEEeCCCc-eEeCCCcccCC
Confidence            4999 9999999999964 57999999999  789999999974          45789999876554 55555678999


Q ss_pred             HHHHHHHHhhCCccccCCCccceeccccc
Q psy8554         111 LGALVLHYAANSLEEHNDDLKTTLAYPVF  139 (148)
Q Consensus       111 l~eLI~~y~~~~l~~~~~~l~~~L~~Pv~  139 (148)
                      |.|||+||+++++.. .+|+.+.|++||.
T Consensus        80 l~~LV~~y~~~~l~~-~~g~~~~L~~Pv~  107 (108)
T d2shpa3          80 LTDLVEHYKKNPMVE-TLGTVLQLKQPLN  107 (108)
T ss_dssp             HHHHHHHHHHSCCBC-TTSCBCCCCEECC
T ss_pred             HHHHHHHHhhCCCCC-CCCceEEcCCCCc
Confidence            999999999999887 5788999999984

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=2.1e-25  Score=142.47  Aligned_cols=79  Identities=24%  Similarity=0.409  Sum_probs=67.1

Q ss_pred             Cccccccc-cCCHHHHHHHhcC---CCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSG---RPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGAL  114 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~---~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eL  114 (148)
                      ++.++||| .|+|++||++|+.   +++|+||||.|  .+|.|+||++.++.++|++|.+..+|+++.+. ..|+||.+|
T Consensus         2 l~~~pWyhg~isR~~Ae~lL~~~~~~~dG~FLvR~S~~~~g~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~-~~F~sl~~L   80 (86)
T d1rpya_           2 LSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSLNGHGQCHVQH-LWFQSVFDM   80 (86)
T ss_dssp             GGGSTTBCTTCCHHHHHHHHHTTGGGGTTCEEEEECSSSTTCEEEEEEETTEEEEEEC----CCCHHHHH-HHHHHHHHH
T ss_pred             CccCcccCCCCCHHHHHHHHHhCCCCCCceEEEEecCCCCCcEEEEEEECCceEEEEEEEcCCceEEeCC-CeeCCHHHH
Confidence            46789999 9999999999965   46899999999  78999999999999999999998888777664 689999999


Q ss_pred             HHHHhh
Q psy8554         115 VLHYAA  120 (148)
Q Consensus       115 I~~y~~  120 (148)
                      |+||++
T Consensus        81 V~~y~t   86 (86)
T d1rpya_          81 LRHFHT   86 (86)
T ss_dssp             HHHHTC
T ss_pred             HHhhcC
Confidence            999974

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-23  Score=138.53  Aligned_cols=82  Identities=23%  Similarity=0.362  Sum_probs=70.9

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEec------CCCCCCC
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAE------PFNIYPS  110 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~------~~~~F~s  110 (148)
                      .++.++||| .|+|++||++|++.++|+||||.|  .+|.|+||++.+++++|++|...++++.+..      ....|+|
T Consensus        11 ~l~~~~Wy~g~i~R~~Ae~~L~~~~~GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~F~s   90 (103)
T d2c9wa2          11 ELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIICVKSKLKQFDS   90 (103)
T ss_dssp             HHHHTSCBCTTCCHHHHHHHHTTSCTTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEETTEEEECTTTTTGGGCCCBSC
T ss_pred             HHhhCCCcCCCCCHHHHHHHhcCCCCCceEEeccCCCCCCEEEEEEECCEEEEEEEEEcCCeEeeCCccccccCCCccCC
Confidence            356789999 999999999999889999999999  7889999999999999999998766544422      2257999


Q ss_pred             HHHHHHHHhhC
Q psy8554         111 LGALVLHYAAN  121 (148)
Q Consensus       111 l~eLI~~y~~~  121 (148)
                      |.+||+||++.
T Consensus        91 l~~LI~~y~~~  101 (103)
T d2c9wa2          91 VVHLIDYYVQM  101 (103)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.6e-22  Score=136.04  Aligned_cols=100  Identities=21%  Similarity=0.343  Sum_probs=77.9

Q ss_pred             CCccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          40 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        40 ~~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      .+...+||| .|+|++||++|.+ ++|+||||+|  .+|.|+||++.+++++||+|.++  |.++.+. ..|+|+.|||+
T Consensus        31 ~~~~~~wyhG~isR~eAe~lL~~-~dGsFLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~--g~~~~~~-~~F~sl~eLV~  106 (141)
T d1xa6a2          31 PKYYGREFHGIISREQADELLGG-VEGAYILRESQRQPGCYTLALRFGNQTLNYRLFHD--GKHFVGE-KRFESIHDLVT  106 (141)
T ss_dssp             SCSSCSSEEEECCHHHHHHHHCS-CTTBEEEEECSSSTTCEEEEEEETTEEEECCCEES--SSEECSS-SCCCCSSHHHH
T ss_pred             cccccceeeccCCHHHHHHHHcC-CCCeEEEEecCCCCCCEEEEEEECCEEEEEEEEEC--CCEEECC-CeECCHHHHHh
Confidence            345568999 9999999999964 5899999999  78999999999999999999863  4455554 57999999885


Q ss_pred             -----HHhhCCccccCCCccceecccccCCCCCCc
Q psy8554         117 -----HYAANSLEEHNDDLKTTLAYPVFAPASGMT  146 (148)
Q Consensus       117 -----~y~~~~l~~~~~~l~~~L~~Pv~~~~p~~~  146 (148)
                           +|+.....   ..+...++.||....|.++
T Consensus       107 dgLv~~~~~~~~~---~~~~~~~t~p~~~~~p~~~  138 (141)
T d1xa6a2         107 DGLITLYIETKAA---EYISKMTTNPIYEHIGYAT  138 (141)
T ss_dssp             HHHHHHHHHHSCH---HHHHHTTSSCCGGGSSSSS
T ss_pred             hhhhhhhcccccc---cccccccCccccccCCcee
Confidence                 56665422   1234567788888777665

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.53  E-value=3e-15  Score=101.69  Aligned_cols=73  Identities=21%  Similarity=0.297  Sum_probs=60.9

Q ss_pred             ccccccc-cCCHHHHHHHhcCCCCceEEEEeC--CCCCEEEEEEeC---CeeEEEEEEEeCCceEEecCCCCCCCHHHHH
Q psy8554          42 DEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS--TTGQYALSIVCS---GAPKHCLVYETERGFGFAEPFNIYPSLGALV  115 (148)
Q Consensus        42 ~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~~~~~~Lsv~~~---~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI  115 (148)
                      ....||| .|+|++||++|++.++|+||||.|  .+|.|+||++..   +.++||+|...+++       ..|.++.++|
T Consensus         7 w~~~~~~G~isr~~ae~~L~~~~~GtFLvR~S~s~~g~~~ls~~~~~~~~~v~h~~i~~~~~~-------~~~~sl~d~l   79 (131)
T d1uura3           7 WQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDTA-------AAKKTFPDFL   79 (131)
T ss_dssp             HHHTSSCBSCCHHHHHHTTSSCCTTCEEEEECSSSTTCEEEEEECSSSSCCEEEEECCGGGSB-------TTTBCHHHHH
T ss_pred             hhCCcEEccCCHHHHHHHHhcCCCCeEEEEecCCCCCcEEEEEEEecCCCcEEEEEEeecCCC-------cccccHHHHH
Confidence            4567999 999999999999889999999999  789999999974   67999999764332       4688999988


Q ss_pred             HHHhhC
Q psy8554         116 LHYAAN  121 (148)
Q Consensus       116 ~~y~~~  121 (148)
                      ..|...
T Consensus        80 ~~~~~~   85 (131)
T d1uura3          80 SEHSQF   85 (131)
T ss_dssp             TTCTTC
T ss_pred             HhHHHh
Confidence            766443

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.1e-15  Score=104.87  Aligned_cols=79  Identities=20%  Similarity=0.261  Sum_probs=65.7

Q ss_pred             Cccccccc-cCCHHHHHHHhcCCCCceEEEEeC---CCCCEEEEEEeCCeeEEEEEEEeCCceEEecCCCCCCCHHHHHH
Q psy8554          41 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPS---TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNIYPSLGALVL  116 (148)
Q Consensus        41 ~~~~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s---~~~~~~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI~  116 (148)
                      +....||| .|+|++||++|+++++|+||||.|   ..|.++|+++..+...|++|...+ . |... ...|.||.|+|.
T Consensus         4 lW~~gw~~G~isr~~a~~~L~~~~~GtFLvR~S~~s~~G~~tis~~~~~~~~~~~i~~~~-p-~t~~-dl~~~sL~dlI~   80 (141)
T d1bg1a3           4 LWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVE-P-YTKQ-QLNNMSFAEIIM   80 (141)
T ss_dssp             HHHSSCCCBCCCTTGGGTTTTTSCTTCBCEEECSSCSSCCEEECCCCSSSCSSCCCCCCC-C-BCGG-GGTSSCHHHHTT
T ss_pred             eecCCeEEEeCCHHHHHHHhhCCCCCeEEEEecCCccCCCEEEEEEecCcCCceEEeecC-C-eecC-ccccCCHHHHHH
Confidence            45668999 999999999999999999999988   579999999999888898886542 2 3333 357999999999


Q ss_pred             HHhhCC
Q psy8554         117 HYAANS  122 (148)
Q Consensus       117 ~y~~~~  122 (148)
                      ||+...
T Consensus        81 ~y~~~~   86 (141)
T d1bg1a3          81 GYKIMD   86 (141)
T ss_dssp             SCCCBC
T ss_pred             hhhhhc
Confidence            998655

>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=5e-05  Score=50.69  Aligned_cols=70  Identities=23%  Similarity=0.361  Sum_probs=47.4

Q ss_pred             ccccc-cCCHHHHHHHhcCCCCceEEEEeC--C-CCCEEEEEEeC----CeeEEEEEEEeCCceEEecCCCCCCCHHHHH
Q psy8554          44 KTWLV-RMSRAQAEALLSGRPDGTFLIRPS--T-TGQYALSIVCS----GAPKHCLVYETERGFGFAEPFNIYPSLGALV  115 (148)
Q Consensus        44 ~~Wyh-~isr~~Ae~lL~~~~~G~FLvR~s--~-~~~~~Lsv~~~----~~v~H~~I~~~~~g~~~~~~~~~F~sl~eLI  115 (148)
                      ..|.. .|++++|+++|++++.|+||+|-|  . .|..++++...    +...++.|.-      +....-.=.||+|.|
T Consensus         7 dG~I~GFIsK~~a~~~L~~~~~GTFLLRFSdS~~~GgitiawV~~~~~~~~~~v~~lqP------~t~kdl~~~sLad~I   80 (142)
T d1bf5a3           7 DGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEP------YTKKELSAVTFPDII   80 (142)
T ss_dssp             TTCCCCCCCHHHHHHHTTTCCSCCCCEEECSSCSSCCEEEEECCCCSSSSCCCCEECCC------BCHHHHHSSCHHHHH
T ss_pred             CCEEEEEecHHHHHHHhhCCCCceEEEEeccCccCCceEEEEEEecCCCCceeEEeeCC------CchhhhccCCHHHHH
Confidence            34667 899999999999999999999998  3 59999988653    2222222211      111001125889999


Q ss_pred             HHHh
Q psy8554         116 LHYA  119 (148)
Q Consensus       116 ~~y~  119 (148)
                      ..|+
T Consensus        81 rd~~   84 (142)
T d1bf5a3          81 RNYK   84 (142)
T ss_dssp             HTCC
T ss_pred             HHHH
Confidence            8875

>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Cbl
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.90  E-value=0.73  Score=26.71  Aligned_cols=40  Identities=23%  Similarity=0.374  Sum_probs=33.5

Q ss_pred             cccc-cCCHHHHHHHhcC--CCCceEEEEeC--CCCCEEEEEEeC
Q psy8554          45 TWLV-RMSRAQAEALLSG--RPDGTFLIRPS--TTGQYALSIVCS   84 (148)
Q Consensus        45 ~Wyh-~isr~~Ae~lL~~--~~~G~FLvR~s--~~~~~~Lsv~~~   84 (148)
                      +-|. .++-+|+...|+.  ..+|+|+.|-|  .-|.+.+-....
T Consensus         3 PgY~AFlTYDevk~rL~~~~~kPGSYiFRlSCTrlGQWAIGyvt~   47 (88)
T d3buxb3           3 PGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTA   47 (88)
T ss_dssp             TTBCTTCCHHHHHHHHGGGTTSTTEEEEEECSSSTTSEEEEEECT
T ss_pred             CceeEEEeHHHHHHHHHHHhcCCCceEEeeccccccceeeeeecc
Confidence            5577 8899999999964  68999999999  999998877653