Psyllid ID: psy8588

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MSMWMRFYPEVTPFQYVDLARKLKYYGFIEFEPCTCDFPKPNISSYWDLEYDLELMCYVALISFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELVLKKTHEDEGRTVRN
Secondary Structure (PSIPRED)
ccccEEcccccccccccccccccccEEEEEEEEcccccccccccccccccccccccEEEEEcccccccccccccHHHHHcccccHHHHHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHcccHHHHHHHHHHccccccEEEccccccccccccEEEEEEEcccEEEEEEcccccEEEEEEEEEEEEEEEEEcccccccccccccccccccccEEEEEEEEcccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccHHHHHHHHHHHHccEEEEEccccccccccHHHHHcHHccccccEEEEEEEEEEccccccccHHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHcccccEEEEccccccccccccEEEEEEEccEEEEEEEcccccEEEEEEEEEEEEEEEEEEcEccccccccccccccccccEEEEEEEEccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
msmwmrfypevtpfQYVDLARKLKyygfiefepctcdfpkpnissywdlEYDLELMCYVALISfnmssplhywdleydlelmtdpVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLARKLKyygfiefepctcdfpkpntkvVVNIGLREINFrirssegeiregtfkvTRMRCWKITINkeedndasnarhntsqanQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELVLKkthedegrtvrn
Flexible Loop (DISEMBL)
msmwmrfypevtpFQYVDLARKLKYYGFIEFEPCTCDFPKPNISSYWDLEYDLELMCYVALISFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQleasgakkeYVDLARKLKYYGFIEfepctcdfpkpnTKVVVNIGLReinfrirssegeiregtfkvtrmrCWKITINKeedndasnarhNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDElvlkkthedegrtvrn
Low Complexity Region (SEG)
MSMWMRFYPEVTPFQYVDLARKLKYYGFIEFEPCTCDFPKPNISSYWDLEYDLELMCYVALISFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELVLKKTHEDEGRTVRN
Disordered region (IsUnstruct)
***WMRFYPEVTPFQYVDLARKLKYYGFIEFEPCTCDFPKPNISSYWDLEYDLELMCYVALISFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKITIN*********************LSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELVLK************
Disordered Region (DISOPRED)
***WMRFYPEVTPFQYVDLARKLKYYGFIEFEPCTCDFPKPNISSYWDLEYDLELMCYVALISFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHK*****************YVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKITINKEED***********QANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSII******************
Disordered Region (DISEMBL)
MSMWMRFYPEVTPFQYVDLARKLKYYGFIEFEPCTCDFPKPNISSYWDLEYDLELMCYVALISFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELVLKKT**********
Disordered Region (DISPRO)
*SMWMRFYPEVTPFQYVDLARKLKYYGFIEFEPCTCDFPKPNISSYWDLEYDLELMCYVALISFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKITINKEED************ANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELVLKKTH*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSMWMRFYPEVTPFQYVDLARKLKYYGFIEFEPCTCDFPKPNISSYWDLEYDLELMCYVALISFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELVLKKTHEDEGRTVRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q5RID7	473	Sorting nexin-17 OS=Danio	yes	N/A	0.694	0.389	0.464	1e-46
Q15036	470	Sorting nexin-17 OS=Homo	yes	N/A	0.683	0.385	0.423	1e-41
Q5R4A5	470	Sorting nexin-17 OS=Pongo	yes	N/A	0.683	0.385	0.423	1e-41
Q5EA77	470	Sorting nexin-17 OS=Bos t	yes	N/A	0.683	0.385	0.418	2e-41
Q8BVL3	470	Sorting nexin-17 OS=Mus m	yes	N/A	0.683	0.385	0.418	5e-41
Q6AYS6	470	Sorting nexin-17 OS=Rattu	yes	N/A	0.683	0.385	0.418	9e-41
Q19532	540	PX domain-containing prot	yes	N/A	0.615	0.301	0.311	2e-20
Q8N9S9	440	Sorting nexin-31 OS=Homo	no	N/A	0.716	0.431	0.270	1e-19
Q6P8Y7	439	Sorting nexin-31 OS=Mus m	no	N/A	0.683	0.412	0.283	2e-19
Q28HD5	428	Sorting nexin-31 OS=Xenop	no	N/A	0.675	0.418	0.255	3e-13

>sp|Q5RID7|SNX17_DANRE Sorting nexin-17 OS=Danio rerio GN=snx17 PE=2 SV=1

 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/185 (46%), Positives = 132/185 (71%), Gaps = 1/185 (0%)

Query: 72  YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
           YWD  YD ++M D VGL++LYAQ VSD+ R  I+V+K+    L  L+  G+KKE++ LA+
Sbjct: 204 YWDTAYDSDVMDDRVGLNLLYAQTVSDIDRGWILVNKEQHRQLKSLQEKGSKKEFIRLAQ 263

Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
            LKYYG+I+F+PC  DFP+    V+V  G  E+NF ++    +++EG+FKVTRMRCW++T
Sbjct: 264 TLKYYGYIKFDPCITDFPEKGCHVIVGAGNNELNFHVKLPNEQMKEGSFKVTRMRCWRVT 323

Query: 192 INK-EEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDEL 250
            ++    N  +N   ++    + +L+FEYL++K++LQW+TI S QAI+MS  LQS++DEL
Sbjct: 324 SSQVPVANGTANPSSSSKCDVKLELAFEYLMSKDRLQWVTITSQQAIMMSICLQSMVDEL 383

Query: 251 VLKKT 255
           ++KK+
Sbjct: 384 MVKKS 388

May be involved in several stages of intracellular protein trafficking. Plays a role in the sorting of endocytosed cell surface receptors. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)).
Danio rerio (taxid: 7955)

>sp|Q15036|SNX17_HUMAN Sorting nexin-17 OS=Homo sapiens GN=SNX17 PE=1 SV=1

 Score =  170 bits (430), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/184 (42%), Positives = 129/184 (70%)

Query: 72  YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
           YWD  YD ++M + VGL++LYAQ VSD+ R  I+V K+    L  L+   +KKE++ LA+
Sbjct: 205 YWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQ 264

Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
            L++YG++ F+ C  DFP+ +  VVV+ G  E++ ++R    ++REG+F+VTRMRCW++T
Sbjct: 265 TLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVT 324

Query: 192 INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELV 251
            +    + ++++        + +L+FEYL++K++LQW+TI S QAI+MS  LQS++DEL+
Sbjct: 325 SSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELM 384

Query: 252 LKKT 255
           +KK+
Sbjct: 385 VKKS 388

May be involved in several stages of intracellular protein trafficking. Plays a role in the sorting of endocytosed LRP1 and APP, and prevents their degradation. Required for maintenance of normal cell surface levels of APP and LRP1. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)).

Homo sapiens (taxid: 9606)

>sp|Q5R4A5|SNX17_PONAB Sorting nexin-17 OS=Pongo abelii GN=SNX17 PE=2 SV=1

 Score =  170 bits (430), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/184 (42%), Positives = 129/184 (70%)

Query: 72  YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
           YWD  YD ++M + VGL++LYAQ VSD+ R  I+V K+    L  L+   +KKE++ LA+
Sbjct: 205 YWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQ 264

Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
            L++YG++ F+ C  DFP+ +  VVV+ G  E++ ++R    ++REG+F+VTRMRCW++T
Sbjct: 265 TLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVT 324

Query: 192 INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELV 251
            +    + ++++        + +L+FEYL++K++LQW+TI S QAI+MS  LQS++DEL+
Sbjct: 325 SSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELM 384

Query: 252 LKKT 255
           +KK+
Sbjct: 385 VKKS 388

May be involved in several stages of intracellular protein trafficking. Plays a role in the sorting of endocytosed LRP1 and APP, and prevents their degradation. Required for maintenance of normal cell surface levels of APP and LRP1. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)).

Pongo abelii (taxid: 9601)

>sp|Q5EA77|SNX17_BOVIN Sorting nexin-17 OS=Bos taurus GN=SNX17 PE=2 SV=1

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/184 (41%), Positives = 128/184 (69%)

Query: 72  YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
           YWD  YD ++M + VGL++LYAQ V+D+ R  I+V K+    L  L+   +KKE++ LA+
Sbjct: 205 YWDSAYDDDVMENRVGLNLLYAQTVADIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQ 264

Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
            L++YG++ F+ C  DFP+ +  VVV+ G  E++ ++R    ++REG+F+VTRMRCW++T
Sbjct: 265 TLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVT 324

Query: 192 INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELV 251
            +    +  +++        + +L+FEYL++K++LQW+TI S QAI+MS  LQS++DEL+
Sbjct: 325 SSVPLPSGGTSSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELM 384

Query: 252 LKKT 255
           +KK+
Sbjct: 385 VKKS 388

May be involved in several stages of intracellular protein trafficking. Plays a role in the sorting of endocytosed LRP1 and APP, and prevents their degradation. Required for maintenance of normal cell surface levels of APP and LRP1. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)).

Bos taurus (taxid: 9913)

>sp|Q8BVL3|SNX17_MOUSE Sorting nexin-17 OS=Mus musculus GN=Snx17 PE=1 SV=2

 Score =  167 bits (424), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 77/184 (41%), Positives = 127/184 (69%)

Query: 72  YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
           YWD  YD ++M + VGL++LYAQ VSD+    I+V K+    L  L+   +KKE++ LA+
Sbjct: 205 YWDSAYDDDVMENRVGLNLLYAQTVSDIEHGWILVTKEQHRQLKSLQEKVSKKEFLRLAQ 264

Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
            L++YG++ F+ C  DFP+ +  VVV+ G  E++ ++R    ++REG+F+VTRMRCW++T
Sbjct: 265 TLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVT 324

Query: 192 INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELV 251
            +    +  +++        + +L+FEYL++K++LQW+TI S QAI+MS  LQS++DEL+
Sbjct: 325 SSVPLPSGGTSSPSRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELM 384

Query: 252 LKKT 255
           +KK+
Sbjct: 385 VKKS 388

May be involved in several stages of intracellular protein trafficking. Plays a role in the sorting of endocytosed LRP1 and APP, and prevents their degradation. Required for maintenance of normal cell surface levels of APP and LRP1. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)).

Mus musculus (taxid: 10090)

>sp|Q6AYS6|SNX17_RAT Sorting nexin-17 OS=Rattus norvegicus GN=Snx17 PE=1 SV=1

 Score =  167 bits (422), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 77/184 (41%), Positives = 126/184 (68%)

Query: 72  YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
           YWD  YD ++M + VGL++LYAQ VSD+    I+V K+    L  L+   +KKE++ LA+
Sbjct: 205 YWDSAYDDDVMENRVGLNLLYAQTVSDIEHGWILVTKEQHRQLKSLQEKVSKKEFLRLAQ 264

Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
            L++YG++ F+ C  DFP+ +  VVV+ G  E++ ++R    ++REG+F+VTRMRCW++T
Sbjct: 265 TLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVT 324

Query: 192 INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELV 251
            +    +  ++         + +L+FEYL++K++LQW+TI S QAI+MS  LQS++DEL+
Sbjct: 325 SSVPLPSGGTSTPSRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELM 384

Query: 252 LKKT 255
           +KK+
Sbjct: 385 VKKS 388

May be involved in several stages of intracellular protein trafficking. Plays a role in the sorting of endocytosed LRP1 and APP, and prevents their degradation. Required for maintenance of normal cell surface levels of APP and LRP1. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)).

Rattus norvegicus (taxid: 10116)

>sp|Q19532|YTDK_CAEEL PX domain-containing protein F17H10.3 OS=Caenorhabditis elegans GN=F17H10.3 PE=2 SV=2

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 17/180 (9%)

Query: 73  WDLEYDLELMTDPVGLDILYAQAVSDVHRESI-VVHKDTKTILNQLEASGAKKEYVDLAR 131
           WD   +  L+ D   +++LY QA+ D     +  V +D  + L    A    K ++    
Sbjct: 292 WDSRVEEPLLDDGNFVELLYKQAMQDYKNGHMDPVKEDLDSKLKSCMARNDSKMFLRTCH 351

Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
           +L  Y +    PC+CD+PKP T   +  G R+I    R   G+ +   F+ TR+R W+I 
Sbjct: 352 QLSTYSYEIMSPCSCDYPKPGTPCEIKFGRRQIIMTTRDETGKPKPSIFRATRIRVWRI- 410

Query: 192 INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELV 251
                          T   ++    FEYL+AK+  +WIT+ ++Q+ILMS LLQSI  E++
Sbjct: 411 ---------------TQVMDKISFQFEYLMAKDTFEWITLDTDQSILMSLLLQSIGSEIL 455

Caenorhabditis elegans (taxid: 6239)

>sp|Q8N9S9|SNX31_HUMAN Sorting nexin-31 OS=Homo sapiens GN=SNX31 PE=2 SV=3

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 110/203 (54%), Gaps = 13/203 (6%)

Query: 57  CYVALISFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQ 116
           C V L  + M+  L       D  LM   V +D+LY QA+ D+ +      +  +  L  
Sbjct: 197 CKVGLRKWYMAPSL-------DSVLMDCRVAVDLLYMQAIQDIEKGWAKPTQAQRQKLEA 249

Query: 117 LEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIR 176
            +   ++ ++++LAR++++YG+++ +PCTCD+P+  +  V+++G  EI+  I   + + +
Sbjct: 250 FQKEDSQTKFLELAREVRHYGYLQLDPCTCDYPESGSGAVLSVGNNEISCCITLPDSQTQ 309

Query: 177 EGTFKVTRMRCWKIT-INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQ 235
           +  F+++R++CW++T +    D D      N +     +L F+Y    +  QW  I + Q
Sbjct: 310 DIVFQMSRVKCWQVTFLGTLLDTDGPQRTLNQN----LELRFQY-SEDSCWQWFVIYTKQ 364

Query: 236 AILMSNLLQSIIDELVLKKTHED 258
           A L+S+ L+ +I E ++K   E+
Sbjct: 365 AFLLSSCLKKMISEKMVKLAAEN 387

May be involved in protein trafficking.

Homo sapiens (taxid: 9606)

>sp|Q6P8Y7|SNX31_MOUSE Sorting nexin-31 OS=Mus musculus GN=Snx31 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 102/187 (54%), Gaps = 6/187 (3%)

Query: 72  YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
           Y D   D  LM      D+LY QAV D+ +E +   +  +  L  L+    + ++++L++
Sbjct: 205 YLDPALDSMLMDCRAAGDLLYMQAVQDIEKEWMKPTQAQREELKALQKKENQTKFLELSQ 264

Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
           ++++YG+++ +PCTC+ P+P     ++IG  EI+  I    G+I++  F+++R++CW++T
Sbjct: 265 EVRHYGYVQLDPCTCNHPEPGCGAQLSIGNNEISCCITLPNGQIQDIAFQMSRVKCWQVT 324

Query: 192 -INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDEL 250
            +    D D      N +     +L F+Y    +  QW  I + QA  +S+ L+ +I E 
Sbjct: 325 FLGTLLDTDGPQRTLNQN----LELRFQY-SEDSCQQWFVIYTKQAFFLSSCLKKMISER 379

Query: 251 VLKKTHE 257
           + K T +
Sbjct: 380 MTKLTEQ 386

May be involved in protein trafficking.

Mus musculus (taxid: 10090)

>sp|Q28HD5|SNX31_XENTR Sorting nexin-31 OS=Xenopus tropicalis GN=snx31 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 72  YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
           Y +   D  LM     +D+LY QAV +   E     KD +  L        K ++++L +
Sbjct: 203 YMNPSNDAMLMGSTEAIDLLYLQAVQEFQMEWTRPTKDQQQKLQHCLKQQNKLKFLELMK 262

Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
            ++YYG++    CT D+P+ +++V + +G  E++    S  G        +  + CW +T
Sbjct: 263 TVEYYGYLHITSCTSDYPECDSEVTIWVGNNEMSCHFYSPGGHAENLRLSIKDLICWNVT 322

Query: 192 -INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDEL 250
            + K+++  + N +H        +L F+Y    + L+ ITI + QA L+S+ L+ ++ E 
Sbjct: 323 LLPKKQEVMSPNHQH-------LELKFDYQQG-SSLKCITIHTEQAFLLSSCLKKMLSER 374

Query: 251 VLKKTHED 258
            + +  E+
Sbjct: 375 PVHRCKEE 382

May be involved in protein trafficking.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
270015093	917	hypothetical protein TcasGA2_TC016062 [T	0.683	0.197	0.540	2e-52
189233693	466	PREDICTED: similar to sorting nexin [Tri	0.683	0.388	0.540	2e-52
242025512	489	Sorting nexin-17, putative [Pediculus hu	0.667	0.361	0.502	6e-49
427779401	426	Putative sorting nexin [Rhipicephalus pu	0.690	0.429	0.483	3e-47
427787543	481	Putative sorting nexin [Rhipicephalus pu	0.690	0.380	0.483	5e-47
427787545	481	Putative sorting nexin [Rhipicephalus pu	0.690	0.380	0.483	6e-47
260790042	400	hypothetical protein BRAFLDRAFT_240864 [	0.694	0.46	0.478	1e-46
432945705	446	PREDICTED: sorting nexin-17-like isoform	0.743	0.441	0.439	6e-46
432945701	471	PREDICTED: sorting nexin-17-like isoform	0.743	0.418	0.439	6e-46
432945703	459	PREDICTED: sorting nexin-17-like isoform	0.743	0.429	0.439	7e-46

>gi|270015093|gb|EFA11541.1| hypothetical protein TcasGA2_TC016062 [Tribolium castaneum]

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/183 (54%), Positives = 136/183 (74%), Gaps = 2/183 (1%)

Query: 72  YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
           YWD  YD ELMTDPV L++LY Q VSDV +  I   +D K+ L+ L++  AK+EY++LAR
Sbjct: 654 YWDCNYDQELMTDPVALNLLYVQVVSDVEKGWICCTRDMKSQLSNLQSRLAKREYIELAR 713

Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
            LKYYGF++F PC CDFPKP TKV++ IG +E++ R+  +   ++EG+FKVTRMRCW+IT
Sbjct: 714 TLKYYGFMQFMPCYCDFPKPQTKVLIAIGDQELSMRLLGTGQFVKEGSFKVTRMRCWRIT 773

Query: 192 INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELV 251
               + + A+N+  N S     +LSFEYL++K+KLQWIT+ S QAILMS  LQS++DEL+
Sbjct: 774 ATHNKQDMAANSHTNASSG--LELSFEYLMSKDKLQWITVSSEQAILMSVCLQSLVDELL 831

Query: 252 LKK 254
           +KK
Sbjct: 832 MKK 834

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233693|ref|XP_969378.2| PREDICTED: similar to sorting nexin [Tribolium castaneum]

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/183 (54%), Positives = 136/183 (74%), Gaps = 2/183 (1%)

Query: 72  YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
           YWD  YD ELMTDPV L++LY Q VSDV +  I   +D K+ L+ L++  AK+EY++LAR
Sbjct: 203 YWDCNYDQELMTDPVALNLLYVQVVSDVEKGWICCTRDMKSQLSNLQSRLAKREYIELAR 262

Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
            LKYYGF++F PC CDFPKP TKV++ IG +E++ R+  +   ++EG+FKVTRMRCW+IT
Sbjct: 263 TLKYYGFMQFMPCYCDFPKPQTKVLIAIGDQELSMRLLGTGQFVKEGSFKVTRMRCWRIT 322

Query: 192 INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELV 251
               + + A+N+  N S     +LSFEYL++K+KLQWIT+ S QAILMS  LQS++DEL+
Sbjct: 323 ATHNKQDMAANSHTNASSG--LELSFEYLMSKDKLQWITVSSEQAILMSVCLQSLVDELL 380

Query: 252 LKK 254
           +KK
Sbjct: 381 MKK 383

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242025512|ref|XP_002433168.1| Sorting nexin-17, putative [Pediculus humanus corporis] gi|212518709|gb|EEB20430.1| Sorting nexin-17, putative [Pediculus humanus corporis]

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 93/185 (50%), Positives = 136/185 (73%), Gaps = 8/185 (4%)

Query: 72  YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
           YWD  YDLELMT+ V L++LY Q +SD+    ++  ++T+  L   ++ GAKK+Y++LAR
Sbjct: 204 YWDPGYDLELMTNKVSLNLLYIQTISDIEYGWVLCSQETRNTLANFQSRGAKKQYLELAR 263

Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEG-EIREGTFKVTRMRCWKI 190
            LKYYGF++F PC CD+P P +KV+V+ G +E+N R++ S+G ++R+G+FKVTRMRCW+I
Sbjct: 264 TLKYYGFLQFRPCICDYPYPGSKVLVSAGNKELNLRVKLSDGDDVRQGSFKVTRMRCWRI 323

Query: 191 TINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDEL 250
           T    +D           +++  +LSFEYL+AK+KLQWITI S QAI+MS  LQS++DEL
Sbjct: 324 TTLHSDD-------PKNLESSNLELSFEYLMAKDKLQWITISSEQAIIMSICLQSMVDEL 376

Query: 251 VLKKT 255
           +LKK+
Sbjct: 377 LLKKS 381

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427779401|gb|JAA55152.1| Putative sorting nexin [Rhipicephalus pulchellus]

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 90/186 (48%), Positives = 135/186 (72%), Gaps = 3/186 (1%)

Query: 72  YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
           YWD  +D  LM D V L++ Y Q +SDV R  +VV KDT+  L  L+A G+KKEY+ LAR
Sbjct: 202 YWDSGWDDALMDDRVALNLAYVQTLSDVERGWVVVPKDTQRQLATLQAKGSKKEYLQLAR 261

Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
            LKYYG+++F PC CD+P+P+T+V+++ G RE+NFR+  ++ + +E +F+VTR+RCW+IT
Sbjct: 262 TLKYYGYLQFAPCFCDYPQPDTRVLISAGGRELNFRLALAQDQYKEISFRVTRIRCWRIT 321

Query: 192 ---INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIID 248
              I+      + N++ +  +  + +LSFEYL++KNKLQWIT+ S+QAIL+S  LQ ++ 
Sbjct: 322 TAVIDHANGECSGNSQSSDGKHQRLELSFEYLMSKNKLQWITVVSSQAILLSVCLQGMVG 381

Query: 249 ELVLKK 254
           EL+LKK
Sbjct: 382 ELLLKK 387

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427787543|gb|JAA59223.1| Putative sorting nexin [Rhipicephalus pulchellus]

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/186 (48%), Positives = 135/186 (72%), Gaps = 3/186 (1%)

Query: 72  YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
           YWD  +D  LM D V L++ Y Q +SDV R  +VV KDT+  L  L+A G+KKEY+ LAR
Sbjct: 202 YWDSGWDDALMDDRVALNLAYVQTLSDVERGWVVVPKDTQRQLATLQAKGSKKEYLQLAR 261

Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
            LKYYG+++F PC CD+P+P+T+V+++ G RE+NFR+  ++ + +E +F+VTR+RCW+IT
Sbjct: 262 TLKYYGYLQFAPCFCDYPQPDTRVLISAGGRELNFRLALAQDQYKEISFRVTRIRCWRIT 321

Query: 192 ---INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIID 248
              I+      + N++ +  +  + +LSFEYL++KNKLQWIT+ S+QAIL+S  LQ ++ 
Sbjct: 322 TAVIDHANGECSGNSQSSDGKHQRLELSFEYLMSKNKLQWITVVSSQAILLSVCLQGMVG 381

Query: 249 ELVLKK 254
           EL+LKK
Sbjct: 382 ELLLKK 387

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427787545|gb|JAA59224.1| Putative sorting nexin [Rhipicephalus pulchellus]

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 90/186 (48%), Positives = 135/186 (72%), Gaps = 3/186 (1%)

Query: 72  YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
           YWD  +D  LM D V L++ Y Q +SDV R  +VV KDT+  L  L+A G+KKEY+ LAR
Sbjct: 202 YWDSGWDDALMDDRVALNLAYVQTLSDVERGWVVVPKDTQRQLATLQAKGSKKEYLQLAR 261

Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
            LKYYG+++F PC CD+P+P+T+V+++ G RE+NFR+  ++ + +E +F+VTR+RCW+IT
Sbjct: 262 TLKYYGYLQFAPCFCDYPQPDTRVLISAGGRELNFRLALAQDQYKEISFRVTRIRCWRIT 321

Query: 192 ---INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIID 248
              I+      + N++ +  +  + +LSFEYL++KNKLQWIT+ S+QAIL+S  LQ ++ 
Sbjct: 322 TAVIDHTNGECSGNSQSSDGKHQRLELSFEYLMSKNKLQWITVVSSQAILLSVCLQGMVG 381

Query: 249 ELVLKK 254
           EL+LKK
Sbjct: 382 ELLLKK 387

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260790042|ref|XP_002590053.1| hypothetical protein BRAFLDRAFT_240864 [Branchiostoma floridae] gi|229275240|gb|EEN46064.1| hypothetical protein BRAFLDRAFT_240864 [Branchiostoma floridae]

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/184 (47%), Positives = 130/184 (70%)

Query: 71  HYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLA 130
           ++W+   D +L+ D + +++LY QAV+D+ R  +   KD    L  L+A G+KKEY+ LA
Sbjct: 205 NFWEPSMDNDLLDDRIAMNLLYVQAVNDIERGWVFAAKDVHKQLAALQAKGSKKEYLKLA 264

Query: 131 RKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKI 190
           R  K YGFI+F+PC  DFP+PN  V+V+ G RE+NFRI+ +  +++EG FKVTRMRCW+I
Sbjct: 265 RTQKSYGFIQFKPCVTDFPQPNCPVIVSAGNRELNFRIKVANNQVKEGIFKVTRMRCWRI 324

Query: 191 TINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDEL 250
           T    E N A+    +     + +++FEYL+AK+KLQWITI+S+QAIL+S  LQ ++DEL
Sbjct: 325 TTQIPETNGANAHGDSKDLKPRLEVAFEYLVAKDKLQWITIESDQAILISMCLQGMVDEL 384

Query: 251 VLKK 254
           ++KK
Sbjct: 385 IMKK 388

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432945705|ref|XP_004083731.1| PREDICTED: sorting nexin-17-like isoform 3 [Oryzias latipes]

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 90/205 (43%), Positives = 145/205 (70%), Gaps = 8/205 (3%)

Query: 58  YVALISFNMSSPLH------YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTK 111
           YV++ S   SS  H      YWD+ YD ++M + VGL++LYAQ VSD+ R  I+V+KD +
Sbjct: 160 YVSITSLQ-SSEFHIVLRKSYWDMAYDQDVMDNRVGLNLLYAQTVSDIERGWILVNKDQQ 218

Query: 112 TILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSS 171
             L  L+  G+KKE++ LA+ LKYYG+I+F+PC  DFP+   +V+V+ G  E+NF ++  
Sbjct: 219 RQLKSLQEKGSKKEFIHLAQTLKYYGYIKFDPCITDFPEKGCQVIVSAGNNELNFHVKLP 278

Query: 172 EGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQAN-QTQLSFEYLLAKNKLQWIT 230
             +++EG+FKVTRMRCW++T ++    + +     +++ + + +L+FEYL++K++LQW+T
Sbjct: 279 NEQMKEGSFKVTRMRCWRVTSSQVPVTNGTTNPCGSAKCDVKLELAFEYLMSKDRLQWVT 338

Query: 231 IQSNQAILMSNLLQSIIDELVLKKT 255
           I S QAI+MS  LQS++DEL++KK+
Sbjct: 339 ITSQQAIMMSICLQSMVDELMVKKS 363

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432945701|ref|XP_004083729.1| PREDICTED: sorting nexin-17-like isoform 1 [Oryzias latipes]

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 90/205 (43%), Positives = 145/205 (70%), Gaps = 8/205 (3%)

Query: 58  YVALISFNMSSPLH------YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTK 111
           YV++ S   SS  H      YWD+ YD ++M + VGL++LYAQ VSD+ R  I+V+KD +
Sbjct: 185 YVSITSLQ-SSEFHIVLRKSYWDMAYDQDVMDNRVGLNLLYAQTVSDIERGWILVNKDQQ 243

Query: 112 TILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSS 171
             L  L+  G+KKE++ LA+ LKYYG+I+F+PC  DFP+   +V+V+ G  E+NF ++  
Sbjct: 244 RQLKSLQEKGSKKEFIHLAQTLKYYGYIKFDPCITDFPEKGCQVIVSAGNNELNFHVKLP 303

Query: 172 EGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQAN-QTQLSFEYLLAKNKLQWIT 230
             +++EG+FKVTRMRCW++T ++    + +     +++ + + +L+FEYL++K++LQW+T
Sbjct: 304 NEQMKEGSFKVTRMRCWRVTSSQVPVTNGTTNPCGSAKCDVKLELAFEYLMSKDRLQWVT 363

Query: 231 IQSNQAILMSNLLQSIIDELVLKKT 255
           I S QAI+MS  LQS++DEL++KK+
Sbjct: 364 ITSQQAIMMSICLQSMVDELMVKKS 388

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432945703|ref|XP_004083730.1| PREDICTED: sorting nexin-17-like isoform 2 [Oryzias latipes]

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 90/205 (43%), Positives = 145/205 (70%), Gaps = 8/205 (3%)

Query: 58  YVALISFNMSSPLH------YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTK 111
           YV++ S   SS  H      YWD+ YD ++M + VGL++LYAQ VSD+ R  I+V+KD +
Sbjct: 173 YVSITSLQ-SSEFHIVLRKSYWDMAYDQDVMDNRVGLNLLYAQTVSDIERGWILVNKDQQ 231

Query: 112 TILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSS 171
             L  L+  G+KKE++ LA+ LKYYG+I+F+PC  DFP+   +V+V+ G  E+NF ++  
Sbjct: 232 RQLKSLQEKGSKKEFIHLAQTLKYYGYIKFDPCITDFPEKGCQVIVSAGNNELNFHVKLP 291

Query: 172 EGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQAN-QTQLSFEYLLAKNKLQWIT 230
             +++EG+FKVTRMRCW++T ++    + +     +++ + + +L+FEYL++K++LQW+T
Sbjct: 292 NEQMKEGSFKVTRMRCWRVTSSQVPVTNGTTNPCGSAKCDVKLELAFEYLMSKDRLQWVT 351

Query: 231 IQSNQAILMSNLLQSIIDELVLKKT 255
           I S QAI+MS  LQS++DEL++KK+
Sbjct: 352 ITSQQAIMMSICLQSMVDELMVKKS 376

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
ZFIN|ZDB-GENE-030131-9475	473	snx17 "sorting nexin 17" [Dani	0.777	0.435	0.435	7.1e-45
UNIPROTKB|F1NI52	468	SNX17 "Uncharacterized protein	0.773	0.438	0.427	1.7e-43
UNIPROTKB|E2RFE5	470	SNX17 "Uncharacterized protein	0.777	0.438	0.399	2.9e-39
UNIPROTKB|Q15036	470	SNX17 "Sorting nexin-17" [Homo	0.777	0.438	0.399	2.9e-39
UNIPROTKB|Q5R4A5	470	SNX17 "Sorting nexin-17" [Pong	0.777	0.438	0.399	2.9e-39
UNIPROTKB|I3L5E2	470	SNX17 "Uncharacterized protein	0.777	0.438	0.399	3.7e-39
UNIPROTKB|Q5EA77	470	SNX17 "Sorting nexin-17" [Bos	0.777	0.438	0.394	7.8e-39
MGI|MGI:2387801	470	Snx17 "sorting nexin 17" [Mus	0.777	0.438	0.394	9.9e-39
RGD|1306424	470	Snx17 "sorting nexin 17" [Ratt	0.777	0.438	0.394	1.3e-38
UNIPROTKB|B4DDM3	256	SNX17 "cDNA FLJ61770, highly s	0.656	0.679	0.419	1.5e-35

ZFIN|ZDB-GENE-030131-9475 snx17 "sorting nexin 17" [Danio rerio (taxid:7955)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 91/209 (43%), Positives = 142/209 (67%)

Query:    50 EYDLELMCYVALISFNMSSPLH--YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVH 107
             E++L  +   +L S +    L   YWD  YD ++M D VGL++LYAQ VSD+ R  I+V+
Sbjct:   180 EFELPYVSITSLHSSDYRIILRKSYWDTAYDSDVMDDRVGLNLLYAQTVSDIDRGWILVN 239

Query:   108 KDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFR 167
             K+    L  L+  G+KKE++ LA+ LKYYG+I+F+PC  DFP+    V+V  G  E+NF 
Sbjct:   240 KEQHRQLKSLQEKGSKKEFIRLAQTLKYYGYIKFDPCITDFPEKGCHVIVGAGNNELNFH 299

Query:   168 IRSSEGEIREGTFKVTRMRCWKITINKEE-DNDASNARHNTSQANQTQLSFEYLLAKNKL 226
             ++    +++EG+FKVTRMRCW++T ++    N  +N   ++    + +L+FEYL++K++L
Sbjct:   300 VKLPNEQMKEGSFKVTRMRCWRVTSSQVPVANGTANPSSSSKCDVKLELAFEYLMSKDRL 359

Query:   227 QWITIQSNQAILMSNLLQSIIDELVLKKT 255
             QW+TI S QAI+MS  LQS++DEL++KK+
Sbjct:   360 QWVTITSQQAIMMSICLQSMVDELMVKKS 388

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISS

GO:0005768 "endosome" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

UNIPROTKB|F1NI52 SNX17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 89/208 (42%), Positives = 140/208 (67%)

Query:    50 EYDLELMCYVALIS--FNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVH 107
             E++L  +   +L +  F +     YWD  YD ++M   VGL++LYAQ VSD+    I+V+
Sbjct:   178 EFELPYVSVTSLHNPEFRIILRKSYWDSSYDDDVMEHHVGLNLLYAQTVSDIEHGWILVN 237

Query:   108 KDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFR 167
             K+    L  L+   +KKE++ LA+ LKYYG+++F+PC  DFP+    VVV+ G  E+NF+
Sbjct:   238 KEQHRQLKSLQEKVSKKEFIRLAQTLKYYGYLKFDPCVTDFPEKGCHVVVSAGNNELNFQ 297

Query:   168 IRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQ 227
             +R    +I+EG+FKVTRMRCW++T +    N  S +    S+  + +L+FEYL++K++LQ
Sbjct:   298 VRLPSEQIKEGSFKVTRMRCWRVTSSVPMSNGPSGSSPGKSEV-KLELAFEYLMSKDRLQ 356

Query:   228 WITIQSNQAILMSNLLQSIIDELVLKKT 255
             W+TI S QAI++S  LQS++DEL++KK+
Sbjct:   357 WVTITSPQAIMLSICLQSMVDELMVKKS 384

GO:0007165 "signal transduction" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

UNIPROTKB|E2RFE5 SNX17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 83/208 (39%), Positives = 138/208 (66%)

Query:    50 EYDLELMCYVALISFNMSSPLH--YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVH 107
             E++L  +   +L S      L   YWD  YD ++M + VGL++LYAQ VSD+ R  I+V 
Sbjct:   181 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 240

Query:   108 KDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFR 167
             K+    L  L+   +KKE++ LA+ L++YG++ F+ C  DFP+ +  VVV+ G  E++ +
Sbjct:   241 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 300

Query:   168 IRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQ 227
             +R    ++REG+F+VTRMRCW++T +    + ++++        + +L+FEYL++K++LQ
Sbjct:   301 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQ 360

Query:   228 WITIQSNQAILMSNLLQSIIDELVLKKT 255
             W+TI S QAI+MS  LQS++DEL++KK+
Sbjct:   361 WVTITSPQAIMMSICLQSMVDELMVKKS 388

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

UNIPROTKB|Q15036 SNX17 "Sorting nexin-17" [Homo sapiens (taxid:9606)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 83/208 (39%), Positives = 138/208 (66%)

Query:    50 EYDLELMCYVALISFNMSSPLH--YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVH 107
             E++L  +   +L S      L   YWD  YD ++M + VGL++LYAQ VSD+ R  I+V 
Sbjct:   181 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 240

Query:   108 KDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFR 167
             K+    L  L+   +KKE++ LA+ L++YG++ F+ C  DFP+ +  VVV+ G  E++ +
Sbjct:   241 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 300

Query:   168 IRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQ 227
             +R    ++REG+F+VTRMRCW++T +    + ++++        + +L+FEYL++K++LQ
Sbjct:   301 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQ 360

Query:   228 WITIQSNQAILMSNLLQSIIDELVLKKT 255
             W+TI S QAI+MS  LQS++DEL++KK+
Sbjct:   361 WVTITSPQAIMMSICLQSMVDELMVKKS 388

GO:0007165 "signal transduction" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=NAS

GO:0006707 "cholesterol catabolic process" evidence=IC

GO:0005102 "receptor binding" evidence=NAS

GO:0006886 "intracellular protein transport" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0016197 "endosomal transport" evidence=NAS

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0035091 "phosphatidylinositol binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q5R4A5 SNX17 "Sorting nexin-17" [Pongo abelii (taxid:9601)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 83/208 (39%), Positives = 138/208 (66%)

Query:    50 EYDLELMCYVALISFNMSSPLH--YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVH 107
             E++L  +   +L S      L   YWD  YD ++M + VGL++LYAQ VSD+ R  I+V 
Sbjct:   181 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 240

Query:   108 KDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFR 167
             K+    L  L+   +KKE++ LA+ L++YG++ F+ C  DFP+ +  VVV+ G  E++ +
Sbjct:   241 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 300

Query:   168 IRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQ 227
             +R    ++REG+F+VTRMRCW++T +    + ++++        + +L+FEYL++K++LQ
Sbjct:   301 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQ 360

Query:   228 WITIQSNQAILMSNLLQSIIDELVLKKT 255
             W+TI S QAI+MS  LQS++DEL++KK+
Sbjct:   361 WVTITSPQAIMMSICLQSMVDELMVKKS 388

GO:0005829 "cytosol" evidence=ISS

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

UNIPROTKB|I3L5E2 SNX17 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 83/208 (39%), Positives = 137/208 (65%)

Query:    50 EYDLELMCYVALISFNMSSPLH--YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVH 107
             E++L  +   +L S      L   YWD  YD ++M + VGL++LYAQ VSD+ R  I+V 
Sbjct:   181 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 240

Query:   108 KDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFR 167
             K+    L  L+   +KKE++ LA+ L++YG++ F+ C  DFP+ +  VVV+ G  E++ +
Sbjct:   241 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 300

Query:   168 IRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQ 227
             +R    ++REG+F+VTRMRCW++T +    +  +++        + +L+FEYL++K++LQ
Sbjct:   301 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGGTSSPGRGRGEVRLELAFEYLMSKDRLQ 360

Query:   228 WITIQSNQAILMSNLLQSIIDELVLKKT 255
             W+TI S QAI+MS  LQS++DEL++KK+
Sbjct:   361 WVTITSPQAIMMSICLQSMVDELMVKKS 388

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q5EA77 SNX17 "Sorting nexin-17" [Bos taurus (taxid:9913)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 82/208 (39%), Positives = 137/208 (65%)

Query:    50 EYDLELMCYVALISFNMSSPLH--YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVH 107
             E++L  +   +L S      L   YWD  YD ++M + VGL++LYAQ V+D+ R  I+V 
Sbjct:   181 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVADIERGWILVT 240

Query:   108 KDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFR 167
             K+    L  L+   +KKE++ LA+ L++YG++ F+ C  DFP+ +  VVV+ G  E++ +
Sbjct:   241 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 300

Query:   168 IRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQ 227
             +R    ++REG+F+VTRMRCW++T +    +  +++        + +L+FEYL++K++LQ
Sbjct:   301 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGGTSSPGRGRGEVRLELAFEYLMSKDRLQ 360

Query:   228 WITIQSNQAILMSNLLQSIIDELVLKKT 255
             W+TI S QAI+MS  LQS++DEL++KK+
Sbjct:   361 WVTITSPQAIMMSICLQSMVDELMVKKS 388

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0006898 "receptor-mediated endocytosis" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0008022 "protein C-terminus binding" evidence=ISS

GO:0005769 "early endosome" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:2387801 Snx17 "sorting nexin 17" [Mus musculus (taxid:10090)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 82/208 (39%), Positives = 136/208 (65%)

Query:    50 EYDLELMCYVALISFNMSSPLH--YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVH 107
             E++L  +   +L S      L   YWD  YD ++M + VGL++LYAQ VSD+    I+V 
Sbjct:   181 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIEHGWILVT 240

Query:   108 KDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFR 167
             K+    L  L+   +KKE++ LA+ L++YG++ F+ C  DFP+ +  VVV+ G  E++ +
Sbjct:   241 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 300

Query:   168 IRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQ 227
             +R    ++REG+F+VTRMRCW++T +    +  +++        + +L+FEYL++K++LQ
Sbjct:   301 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGGTSSPSRGRGEVRLELAFEYLMSKDRLQ 360

Query:   228 WITIQSNQAILMSNLLQSIIDELVLKKT 255
             W+TI S QAI+MS  LQS++DEL++KK+
Sbjct:   361 WVTITSPQAIMMSICLQSMVDELMVKKS 388

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005768 "endosome" evidence=IPI

GO:0005769 "early endosome" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

GO:0007154 "cell communication" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008289 "lipid binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=ISO

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=ISO

RGD|1306424 Snx17 "sorting nexin 17" [Rattus norvegicus (taxid:10116)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 82/208 (39%), Positives = 135/208 (64%)

Query:    50 EYDLELMCYVALISFNMSSPLH--YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVH 107
             E++L  +   +L S      L   YWD  YD ++M + VGL++LYAQ VSD+    I+V 
Sbjct:   181 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIEHGWILVT 240

Query:   108 KDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFR 167
             K+    L  L+   +KKE++ LA+ L++YG++ F+ C  DFP+ +  VVV+ G  E++ +
Sbjct:   241 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 300

Query:   168 IRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQ 227
             +R    ++REG+F+VTRMRCW++T +    +  ++         + +L+FEYL++K++LQ
Sbjct:   301 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGGTSTPSRGRGEVRLELAFEYLMSKDRLQ 360

Query:   228 WITIQSNQAILMSNLLQSIIDELVLKKT 255
             W+TI S QAI+MS  LQS++DEL++KK+
Sbjct:   361 WVTITSPQAIMMSICLQSMVDELMVKKS 388

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0005769 "early endosome" evidence=IEA;ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0006898 "receptor-mediated endocytosis" evidence=IEA;ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA;ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISO;ISS

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=ISO;ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA;ISO

UNIPROTKB|B4DDM3 SNX17 "cDNA FLJ61770, highly similar to Sorting nexin-17" [Homo sapiens (taxid:9606)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 73/174 (41%), Positives = 122/174 (70%)

Query:    82 MTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLARKLKYYGFIEF 141
             M + VGL++LYAQ VSD+ R  I+V K+    L  L+   +KKE++ LA+ L++YG++ F
Sbjct:     1 MENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRF 60

Query:   142 EPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKITINKEEDNDAS 201
             + C  DFP+ +  VVV+ G  E++ ++R    ++REG+F+VTRMRCW++T +    + ++
Sbjct:    61 DACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGST 120

Query:   202 NARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELVLKKT 255
             ++        + +L+FEYL++K++LQW+TI S QAI+MS  LQS++DEL++KK+
Sbjct:   121 SSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKS 174

GO:0005768 "endosome" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	265
cd13337	114	cd13337, PX-FERM_C_SNX17, sorting nexin 17 Phox FE	3e-55
cd13207	121	cd13207, PX-FERM_C_SNX, sorting nexin family Phox	4e-34
cd13336	118	cd13336, PX-FERM_C_SNX31, sorting nexin family Pho	8e-22
cd13337	114	cd13337, PX-FERM_C_SNX17, sorting nexin 17 Phox FE	7e-09
cd13207	121	cd13207, PX-FERM_C_SNX, sorting nexin family Phox	3e-05
cd13336	118	cd13336, PX-FERM_C_SNX31, sorting nexin family Pho	7e-04

>gnl|CDD|241491 cd13337, PX-FERM_C_SNX17, sorting nexin 17 Phox FERM-like domain C-lobe

 Score =  173 bits (440), Expect = 3e-55
 Identities = 69/123 (56%), Positives = 96/123 (78%), Gaps = 10/123 (8%)

Query: 128 DLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRC 187
            LAR LKYYG+I+FEPC CD+PKPNT+V+V+IG RE+NFR++  + +++EG+F+VTRMRC
Sbjct: 2   RLARTLKYYGYIQFEPCICDYPKPNTRVLVSIGNRELNFRVKLEDDKVKEGSFRVTRMRC 61

Query: 188 WKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSII 247
           W+IT   +E++D              +LSFEYL++K+KLQWIT++S QAILMS  LQS++
Sbjct: 62  WRITSTHDEESDEVG----------LELSFEYLMSKDKLQWITLRSEQAILMSMCLQSMV 111

Query: 248 DEL 250
           DEL
Sbjct: 112 DEL 114

SNX17 is a beta1-integrin-tail-binding protein that interacts with the free kindlin-binding site in endosomes to stabilize beta1 integrins, resulting in their recycling to the cell surface where they can be reused. SNX17 contains a N-terminal PX domain, a FERM-like domain, and a unique C-terminal region. SNX17 binds Ras GTPase through its FERM-like domains. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. These interactions place the PX-FERM-like proteins at a hub of endosomal sorting and signaling processes. These proteins participate in a network of interactions that will impact on both endosomal protein trafficking and compartment specific Ras signaling cascades. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 114

>gnl|CDD|241361 cd13207, PX-FERM_C_SNX, sorting nexin family Phox FERM-like domain C-lobe

 Score =  119 bits (300), Expect = 4e-34
 Identities = 53/124 (42%), Positives = 87/124 (70%), Gaps = 3/124 (2%)

Query: 127 VDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMR 186
           ++LA+ L++YG+I F+ C+CDFP+    V V+ G  E++ +I+    +  EG+FKVTRMR
Sbjct: 1   LNLAQTLEHYGYIIFDHCSCDFPEKGCIVAVSAGNNELSAQIKLPCTQEGEGSFKVTRMR 60

Query: 187 CWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSI 246
           CW++T +   D   S+++       + +L+FEYL++K++LQW+TI + QAI+MS  LQS+
Sbjct: 61  CWRVTSSWPLDEG-SDSQQTLEV--RLELAFEYLMSKDRLQWVTIFTPQAIMMSICLQSM 117

Query: 247 IDEL 250
           +DEL
Sbjct: 118 VDEL 121

Sorting nexins function in regulating recycling from endosomes to the cell surface. SNX17, SNX27, and SNX31 contain a N-terminal PX domain, a FERM-like domain, and a unique C-terminal region. All three proteins are able to bind the Ras GTPase through their FERM-like domains. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. These interactions place the PX-FERM-like proteins at a hub of endosomal sorting and signaling processes. These proteins participate in a network of interactions that will impact on both endosomal protein trafficking and compartment specific Ras signaling cascades. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 121

>gnl|CDD|241490 cd13336, PX-FERM_C_SNX31, sorting nexin family Phox FERM-like domain C-lobe

 Score = 87.2 bits (216), Expect = 8e-22
 Identities = 38/125 (30%), Positives = 81/125 (64%), Gaps = 10/125 (8%)

Query: 127 VDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMR 186
           ++LA+++++YG+++ +PCTCD+P+  ++V V++G  EI+  I+  + + +E  FK++R++
Sbjct: 1   LELAQEVQHYGYLQLDPCTCDYPECGSEVNVSVGNNEISCCIKLPDNQTQEVRFKISRVK 60

Query: 187 CWKITI--NKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQ 244
           CW++T     +++  ++  ++        +L FEY    +  +WITI + QA L+S+ L+
Sbjct: 61  CWQVTFLGTLKQEVMSTLNQN-------LELKFEY-NESSSWKWITIYTKQAFLLSSCLK 112

Query: 245 SIIDE 249
            +I E
Sbjct: 113 KMISE 117

SNX31 functions in regulating recycling from endosomes to the cell surface. SNX31 contain a N-terminal PX domain, a FERM-like domain, and a unique C-terminal region. It bind Ras GTPase through its FERM-like domains. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. These interactions place the PX-FERM-like proteins at a hub of endosomal sorting and signaling processes. These proteins participate in a network of interactions that will impact on both endosomal protein trafficking and compartment specific Ras signaling cascades. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 118

>gnl|CDD|241491 cd13337, PX-FERM_C_SNX17, sorting nexin 17 Phox FERM-like domain C-lobe

 Score = 52.3 bits (126), Expect = 7e-09
 Identities = 19/26 (73%), Positives = 22/26 (84%)

Query: 18 DLARKLKYYGFIEFEPCTCDFPKPNI 43
           LAR LKYYG+I+FEPC CD+PKPN 
Sbjct: 2  RLARTLKYYGYIQFEPCICDYPKPNT 27

SNX17 is a beta1-integrin-tail-binding protein that interacts with the free kindlin-binding site in endosomes to stabilize beta1 integrins, resulting in their recycling to the cell surface where they can be reused. SNX17 contains a N-terminal PX domain, a FERM-like domain, and a unique C-terminal region. SNX17 binds Ras GTPase through its FERM-like domains. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. These interactions place the PX-FERM-like proteins at a hub of endosomal sorting and signaling processes. These proteins participate in a network of interactions that will impact on both endosomal protein trafficking and compartment specific Ras signaling cascades. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 114

>gnl|CDD|241361 cd13207, PX-FERM_C_SNX, sorting nexin family Phox FERM-like domain C-lobe

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 12/25 (48%), Positives = 21/25 (84%)

Query: 17 VDLARKLKYYGFIEFEPCTCDFPKP 41
          ++LA+ L++YG+I F+ C+CDFP+ 
Sbjct: 1  LNLAQTLEHYGYIIFDHCSCDFPEK 25

Sorting nexins function in regulating recycling from endosomes to the cell surface. SNX17, SNX27, and SNX31 contain a N-terminal PX domain, a FERM-like domain, and a unique C-terminal region. All three proteins are able to bind the Ras GTPase through their FERM-like domains. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. These interactions place the PX-FERM-like proteins at a hub of endosomal sorting and signaling processes. These proteins participate in a network of interactions that will impact on both endosomal protein trafficking and compartment specific Ras signaling cascades. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 121

>gnl|CDD|241490 cd13336, PX-FERM_C_SNX31, sorting nexin family Phox FERM-like domain C-lobe

 Score = 38.3 bits (89), Expect = 7e-04
 Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 8/58 (13%)

Query: 17 VDLARKLKYYGFIEFEPCTCDFPKPNISSYWDLEYDLELMCYVAL-------ISFNMS 67
          ++LA+++++YG+++ +PCTCD+P+        +  + E+ C + L       + F +S
Sbjct: 1  LELAQEVQHYGYLQLDPCTCDYPECGSEVNVSVGNN-EISCCIKLPDNQTQEVRFKIS 57

SNX31 functions in regulating recycling from endosomes to the cell surface. SNX31 contain a N-terminal PX domain, a FERM-like domain, and a unique C-terminal region. It bind Ras GTPase through its FERM-like domains. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. These interactions place the PX-FERM-like proteins at a hub of endosomal sorting and signaling processes. These proteins participate in a network of interactions that will impact on both endosomal protein trafficking and compartment specific Ras signaling cascades. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 118

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
KOG3784|consensus	407		100.0
KOG3784|consensus	407		99.29
cd01777	87	SNX27_RA Ubiquitin domain of SNX27 (sorting nexin	98.86
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	98.41
PF00373	126	FERM_M: FERM central domain; InterPro: IPR019748 T	93.68
PF00373	126	FERM_M: FERM central domain; InterPro: IPR019748 T	86.09
KOG4261|consensus	1003		84.47
KOG3530|consensus	616		83.34

>KOG3784|consensus

Probab=100.00  E-value=2.6e-65  Score=480.78  Aligned_cols=213  Identities=35%  Similarity=0.619  Sum_probs=195.8

Q ss_pred             Ccceeeecccccceee-EEEeecCC----------CCCCCCCeeeeeccccccccceeeeecCceeeeeeeeeccccccc
Q psy8588          12 TPFQYVDLARKLKYYG-FIEFEPCT----------CDFPKPNISSYWDLEYDLELMCYVALISFNMSSPLHYWDLEYDLE   80 (265)
Q Consensus        12 ~~~~~l~L~~el~~Yf-lf~~~~~~----------~dfe~Pyis~~s~~~~n~el~~~~a~~~~~iv~Rk~~wd~t~~~~   80 (265)
                      .++.+|||++++.+|| ||++....          +|||.||.+..+.           .+..+.+++||||||+..|..
T Consensus       136 ~v~~kl~l~~e~i~~f~lFlvr~~~~~~ls~vRkl~~fE~p~vs~t~~-----------~~~~~~l~LRk~~~ds~~e~~  204 (407)
T KOG3784|consen  136 SVCRKLGLPDELIGYFGLFLVRDNDPGNLSFVRKLADFESPYVSLTSN-----------YVSACELLLRKWYWDSSRERA  204 (407)
T ss_pred             HHHhhcCCchHhhhheeeeEEeccCCCcceeeeeeccccccccccccc-----------ccccccceeeeeeecchhhhH
Confidence            3567899999999999 99999662          9999998776643           123466999999999999999


Q ss_pred             ccCCcccchhhhhhhhhhccCCeEEeChhHHHHHHHHHhcCCHHHHHHHHHhCCCcCeEEcCCcccCCCCCCceEEEEEe
Q psy8588          81 LMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIG  160 (265)
Q Consensus        81 L~~d~~al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~~~k~eyL~lar~l~~YG~v~f~pC~cD~p~~~~~v~vsiG  160 (265)
                      |++++++++|+|.|||+|+++||+.++.++..||++||+++++++||+|||+|+||||++||||+||||+||+.|++++|
T Consensus       205 L~d~~~~v~llY~Qav~D~~~g~~~~~~e~~~QL~slq~q~~~~~fL~m~R~l~~Y~~l~f~~c~CD~p~kg~~~~~~~g  284 (407)
T KOG3784|consen  205 LMDNRVAVNLLYVQAVQDIERGWVVPTKEQYDQLKSLQEEESMKEFLELARTLEGYGYLIFDPCVCDYPEKGTPAVISVG  284 (407)
T ss_pred             HhcCchHHHHHHHHHHHHHhcCceeechhhHHHHHHHHHhhhHHHHHHHHHhhccCCeEecCccccCCCCCCCeEEEEEc
Confidence            99999999999999999999999999988888999999999999999999999999999999999999999999999999


Q ss_pred             cCceEEEEecCCCceEEEEEEeceEEEEEeeeccccccccccccCCCCCCcceEEEEEEEcc--CC-eeeEEEEecchHH
Q psy8588         161 LREINFRIRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLA--KN-KLQWITIQSNQAI  237 (265)
Q Consensus       161 ~~~l~l~~~~~~~~~~e~~F~~trmr~Wrvt~~~~~~~~~~~~~~~~~~~~~l~f~FEYl~~--~~-~~~WIti~T~qa~  237 (265)
                      ++++.+++..|++++++++|+||||||||||                  +.+++|+|||++.  ++ +||||||+||||+
T Consensus       285 ~~~ll~~~teegq~~q~i~F~~trmr~Wrvt------------------e~~la~~FEy~~~~~~d~k~rWv~I~T~qa~  346 (407)
T KOG3784|consen  285 NHELLLACTEEGQQNQEIAFRWTRMRCWRVT------------------EEGLAFSFEYLRDEVKDKKLRWVTIFTPQAI  346 (407)
T ss_pred             chhheeeeccCCCccceeEEEeeeeEeeecc------------------HHHHHHHHHHHHhhccccceeEEEEcCcHHH
Confidence            9999998777776789999999999999999                  4569999999994  55 9999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy8588         238 LMSNLLQSIIDELVLK  253 (265)
Q Consensus       238 lms~Clq~mv~E~l~~  253 (265)
                      |||+|||+|++|++.+
T Consensus       347 lMs~Clq~m~~El~~~  362 (407)
T KOG3784|consen  347 LMSECLQSMVSELLVK  362 (407)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999999954

>KOG3784|consensus

Probab=99.29  E-value=1.3e-12  Score=124.61  Aligned_cols=104  Identities=18%  Similarity=0.375  Sum_probs=90.6

Q ss_pred             eeccCCCcceeeecccccceeeEEEeecCCCCCCCCCeeee-eccccccccceeeeecCcee------eeeeeeeccccc
Q psy8588           6 RFYPEVTPFQYVDLARKLKYYGFIEFEPCTCDFPKPNISSY-WDLEYDLELMCYVALISFNM------SSPLHYWDLEYD   78 (265)
Q Consensus         6 ~~~~~~~~~~~l~L~~el~~Yflf~~~~~~~dfe~Pyis~~-s~~~~n~el~~~~a~~~~~i------v~Rk~~wd~t~~   78 (265)
                      .+|++++..++|+|+|++.+|++.+|.+|.||||.|...+. ++  ||+||.++.+.++.+.      ++|+++||++  
T Consensus       240 slq~q~~~~~fL~m~R~l~~Y~~l~f~~c~CD~p~kg~~~~~~~--g~~~ll~~~teegq~~q~i~F~~trmr~Wrvt--  315 (407)
T KOG3784|consen  240 SLQEEESMKEFLELARTLEGYGYLIFDPCVCDYPEKGTPAVISV--GNHELLLACTEEGQQNQEIAFRWTRMRCWRVT--  315 (407)
T ss_pred             HHHHhhhHHHHHHHHHhhccCCeEecCccccCCCCCCCeEEEEE--cchhheeeeccCCCccceeEEEeeeeEeeecc--
Confidence            47899999999999999999999999999999999999988 88  9999999999887422      9999999998  


Q ss_pred             ccccCCcccchhhhhhhh---hhccCCeEEeChhHHHHHHHHHh
Q psy8588          79 LELMTDPVGLDILYAQAV---SDVHRESIVVHKDTKTILNQLEA  119 (265)
Q Consensus        79 ~~L~~d~~al~LlY~QAv---~Dv~~gwI~~~~eq~~qL~~lq~  119 (265)
                            +.++.|.|.++.   .|-+..||++.++|+..|+.+-+
T Consensus       316 ------e~~la~~FEy~~~~~~d~k~rWv~I~T~qa~lMs~Clq  353 (407)
T KOG3784|consen  316 ------EEGLAFSFEYLRDEVKDKKLRWVTIFTPQAILMSECLQ  353 (407)
T ss_pred             ------HHHHHHHHHHHHhhccccceeEEEEcCcHHHHHHHHHH
Confidence                  556666666667   45589999999999999997654

>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27)

Probab=98.86  E-value=7.5e-10  Score=85.93  Aligned_cols=48  Identities=10%  Similarity=0.060  Sum_probs=43.8

Q ss_pred             cceeeecccccceee-EEEeecCC-----CCCCCC---CeeeeeccccccccceeeeecCceeeeeee
Q psy8588          13 PFQYVDLARKLKYYG-FIEFEPCT-----CDFPKP---NISSYWDLEYDLELMCYVALISFNMSSPLH   71 (265)
Q Consensus        13 ~~~~l~L~~el~~Yf-lf~~~~~~-----~dfe~P---yis~~s~~~~n~el~~~~a~~~~~iv~Rk~   71 (265)
                      .+++|||++++.+|| ||++.+.+     +|||.|   |+++|++           |++++|+.+|||
T Consensus        31 v~~kl~L~~e~~~YFaLFev~~~~f~RKL~dfE~Ph~ly~~ny~s-----------a~~~~cl~~rkw   87 (87)
T cd01777          31 LVAKAGMDSYTQNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTS-----------AVPGTCLTARKW   87 (87)
T ss_pred             HHHHhCCCHHHHhheeeeEEecceEEEeccCccCCceEEEEEeec-----------cCCcceEEEecC
Confidence            467899999999999 99999887     999999   8999977           568999999998

SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.

>smart00295 B41 Band 4

Probab=98.41  E-value=3.2e-07  Score=78.70  Aligned_cols=96  Identities=15%  Similarity=0.206  Sum_probs=66.5

Q ss_pred             cceeeecccccceee-EEEeecCC--CCCCCCCeeeeeccccccccceeeeecCceeeeeeeeecccccccccCCcccch
Q psy8588          13 PFQYVDLARKLKYYG-FIEFEPCT--CDFPKPNISSYWDLEYDLELMCYVALISFNMSSPLHYWDLEYDLELMTDPVGLD   89 (265)
Q Consensus        13 ~~~~l~L~~el~~Yf-lf~~~~~~--~dfe~Pyis~~s~~~~n~el~~~~a~~~~~iv~Rk~~wd~t~~~~L~~d~~al~   89 (265)
                      .++++||. + ..|| ||......  ..+..|.-.+...  ..       .....++..|+++|-+.. ..+..|+.+++
T Consensus        33 v~~~~~l~-~-~~~F~L~~~~~~~~~~~~l~~~~~l~~~--~~-------~~~~~~l~fr~r~~~~~~-~~~~~d~~~~~  100 (207)
T smart00295       33 VCRKLGIR-E-SEYFGLQFEDPDEDLSHWLDPAKTLLDQ--DV-------KSEPLTLYFRVKFYPPDP-LQLKEDPTRLN  100 (207)
T ss_pred             HHHHhCCC-c-cceeEEEEEcCCCCcCeeCCCccCHHHh--cC-------CCCCcEEEEEEEEccCCH-HHhcchhHHHH
Confidence            35667883 4 4555 99988654  1233332222211  00       002468899999997763 34667999999


Q ss_pred             hhhhhhhhhccCCeEEeChhHHHHHHHHHhc
Q psy8588          90 ILYAQAVSDVHRESIVVHKDTKTILNQLEAS  120 (265)
Q Consensus        90 LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~  120 (265)
                      ++|.|+..|+..|++.++.+++.+|.+|+-+
T Consensus       101 ~ly~Q~~~di~~g~~~~~~~~~~~Laal~~q  131 (207)
T smart00295      101 LLYLQVRNDILEGRLPCPEEEALLLAALALQ  131 (207)
T ss_pred             HHHHHHHHHHHcCccCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999987544

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4

Probab=93.68  E-value=0.029  Score=44.35  Aligned_cols=38  Identities=26%  Similarity=0.419  Sum_probs=34.9

Q ss_pred             cCCcccchhhhhhhhhhccCCeEEeChhHHHHHHHHHh
Q psy8588          82 MTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEA  119 (265)
Q Consensus        82 ~~d~~al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~  119 (265)
                      .+|+.++.++|.|+..|+-.|-+.++.+.+.+|.+|+-
T Consensus         5 ~~d~~~~~lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~   42 (126)
T PF00373_consen    5 IDDPITRHLLYLQARRDVLQGRLPCSEEDAIKLAALQL   42 (126)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTTSSTS-HHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999874

1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....

>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4

Probab=86.09  E-value=0.34  Score=38.13  Aligned_cols=32  Identities=22%  Similarity=0.398  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCCCcCeEEc
Q psy8588         110 TKTILNQLEASGAKKEYVDLARKLKYYGFIEF  141 (265)
Q Consensus       110 q~~qL~~lq~~~~k~eyL~lar~l~~YG~v~f  141 (265)
                      ...++..+....-+..||++|+++|+||.-.|
T Consensus        95 ~~~~l~~~s~~~a~~~fl~~~~~~p~yG~~~F  126 (126)
T PF00373_consen   95 QHKKLRGMSPEEAKLQFLQICQSLPTYGSTFF  126 (126)
T ss_dssp             HHHHTTT--HHHHHHHHHHHHCTSTTTTEEEE
T ss_pred             HHHHhhCCCHHHHHHHHHHHHhcCCCCCceeC
Confidence            34445555555677889999999999998776

1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....

>KOG4261|consensus

Probab=84.47  E-value=0.45  Score=50.09  Aligned_cols=75  Identities=31%  Similarity=0.399  Sum_probs=54.8

Q ss_pred             eeeeeeecccccccccCCcccchhhhhhhhhhccCCeEEeChhHHHHHHHHHhc--------------------------
Q psy8588          67 SSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEAS--------------------------  120 (265)
Q Consensus        67 v~Rk~~wd~t~~~~L~~d~~al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~--------------------------  120 (265)
                      .+|.++|-..-.. --.|++-++|+|.|+++++-.|--.+..+++.++-.+|..                          
T Consensus       191 llRrk~f~sd~nv-dsrdpvqlnllyvQ~rD~il~g~hpv~~~kA~e~a~~qshiq~g~~~~~k~k~~ld~kd~lpk~y~  269 (1003)
T KOG4261|consen  191 LLRRKFFFSDQNV-DSRDPVQLNLLYVQARDDILNGSHPVSFEKACEFAGFQSHIQFGPHNEDKHKGFLDLKDFLPKEYV  269 (1003)
T ss_pred             HHHHHHhhccccc-cccchHHhhhhhhhhhcccccCcCchhHHHHHHHhccccccccCCchhhccccchhccccChHHHh
Confidence            5555555332222 2458999999999999999999998888888777655432                          


Q ss_pred             ---------------------CCHHHHHHHHHhCCCcCeEEcC
Q psy8588         121 ---------------------GAKKEYVDLARKLKYYGFIEFE  142 (265)
Q Consensus       121 ---------------------~~k~eyL~lar~l~~YG~v~f~  142 (265)
                                           ..|..|.++||.|+.||--.|-
T Consensus       270 k~k~ekKif~~~k~~~~~sei~ak~~y~k~~r~l~tygvtff~  312 (1003)
T KOG4261|consen  270 KQKGEKKIFQAHKNCGGMSEIDAKVKYVKLARSLKTYGVTFFL  312 (1003)
T ss_pred             ccccchhhhhhhhhhcchhHHHHHHHHHHHhccccccceEEEE
Confidence                                 2344589999999999976663

>KOG3530|consensus

Probab=83.34  E-value=2.9  Score=42.85  Aligned_cols=112  Identities=15%  Similarity=0.207  Sum_probs=77.7

Q ss_pred             CceeeeeeeeecccccccccCCcccchhhhhhhhhhccCCeEEeChhHHHHHHHHH--hc-CC-----------------
Q psy8588          63 SFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLE--AS-GA-----------------  122 (265)
Q Consensus        63 ~~~iv~Rk~~wd~t~~~~L~~d~~al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq--~~-~~-----------------  122 (265)
                      ...+-+|.+|+..  |..-+..+..==++|.|.-+|+-.|-+.|.-+.|.+|.||.  ++ |+                 
T Consensus        81 pytL~~rVKfY~s--dP~~Lree~tRYqfflQlKqDll~GRL~Cp~~~AaeLaAl~lQsELGDYn~~~Ht~~yVSefRf~  158 (616)
T KOG3530|consen   81 PYTLHLRVKFYPS--DPNNLREENTRYQFFLQLKQDLLSGRLYCPFETAAELAALILQSELGDYNEEEHTGGYVSEFRFL  158 (616)
T ss_pred             CeEEEEEEEeccC--ChhhhhchhhHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhcCCChhhccccceeeeEec
Confidence            3456777777521  22212334443478899999999999999889999998764  32 11                 


Q ss_pred             --------------------------HHHHHHHHHhCCCcCe---EEcCCcccCCCCCCceEEEEEecCceEEEEecCCC
Q psy8588         123 --------------------------KKEYVDLARKLKYYGF---IEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEG  173 (265)
Q Consensus       123 --------------------------k~eyL~lar~l~~YG~---v~f~pC~cD~p~~~~~v~vsiG~~~l~l~~~~~~~  173 (265)
                                                ..+||+-|+-|..||-   ++-++       .|+..-+.+...+|..=    +|
T Consensus       159 p~Qte~LE~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V~g~-------dg~ey~LGLTptGIlvf----~g  227 (616)
T KOG3530|consen  159 PNQTEELEERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPVKGH-------DGSEYYLGLTPTGILVF----EG  227 (616)
T ss_pred             ccccHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceeeecC-------CCceeEeeccCceEEEE----EC
Confidence                                      2349999999999993   34443       56666677777777663    35


Q ss_pred             ceEEEEEEeceEEE
Q psy8588         174 EIREGTFKVTRMRC  187 (265)
Q Consensus       174 ~~~e~~F~~trmr~  187 (265)
                      ..+.+.|.|.+|-.
T Consensus       228 ~~kig~f~WpkI~K  241 (616)
T KOG3530|consen  228 KKKIGLFFWPKITK  241 (616)
T ss_pred             CceeeEEecchheE
Confidence            56799999999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
3au4_A	555	Myosin-X; protein-protein complex, motor protein c	99.25
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	99.06
1mix_A	206	Talin; focal adhesion, integrin binding, FERM doma	99.05
4dxa_B	322	KREV interaction trapped protein 1; GTPase, FERM,	99.03
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	98.98
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	98.94
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	98.93
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	98.86
4f7g_A	222	Talin-1; alpha-helix bundle, integrin activation,	98.72
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.56
2al6_A	375	Focal adhesion kinase 1; transferase; 2.35A {Gallu	98.06
4eku_A	392	Protein-tyrosine kinase 2-beta; proline-rich tyros	97.88
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	91.56

>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A

Probab=99.25  E-value=3.7e-11  Score=117.97  Aligned_cols=166  Identities=13%  Similarity=0.207  Sum_probs=124.7

Q ss_pred             CceeeeeeeeecccccccccCCcccchhhhhhhhhhccCCeEEeChhHHHHHHHHH--h---------------------
Q psy8588          63 SFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLE--A---------------------  119 (265)
Q Consensus        63 ~~~iv~Rk~~wd~t~~~~L~~d~~al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq--~---------------------  119 (265)
                      ..++..|+++|...  ..+..|++++.|+|.|+..|+-.|++.++.+.+.+|.+|+  .                     
T Consensus       298 ~~~l~fR~~ff~~~--~~~~~d~~~~~lly~Q~~~dil~G~~~~~~e~a~~LAAl~lQ~~~GD~~~~~~~~~l~~~lP~~  375 (555)
T 3au4_A          298 PWKFYFKLYCFLDT--DNVPKDSVEFAFMFEQAHEAVIHGHHPAPEENLQVLAALRLQYLQGDYTLHAAIPPLEEVYSLQ  375 (555)
T ss_dssp             CCEEEEEEEECSCC--TTCCTTSHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHCSCCTTCCCCCGGGTSCCH
T ss_pred             ceEEEEEEEeecCc--ccCCcchHHHHhhHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHcCCCccccchhhhhhhCCHH
Confidence            46789999999543  3356788999999999999999999999999999999884  1                     


Q ss_pred             ----------------------------------------------------------cCCHHHHHHHHHhCCCcCeEEc
Q psy8588         120 ----------------------------------------------------------SGAKKEYVDLARKLKYYGFIEF  141 (265)
Q Consensus       120 ----------------------------------------------------------~~~k~eyL~lar~l~~YG~v~f  141 (265)
                                                                                ...+.+||++|+++|+||.-.|
T Consensus       376 ~l~~~~~~~~k~~s~~~~~l~~~~~~~~~~~~~W~~~~~~~~~~~I~~~~~~~~g~s~~eA~~~yL~~~~~lp~yG~~~F  455 (555)
T 3au4_A          376 RLKARISQSTKTFSFRTGSVVRQKVEEEQMLDMWIKEEVSSARASIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLF  455 (555)
T ss_dssp             HHHHHHHHTTCCEECCTTSCCEECCCCHHHHHHHTHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTSTTTTCEEE
T ss_pred             HhhhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcCceEE
Confidence                                                                      0113579999999999999999


Q ss_pred             CCcccCCCCC--CceEEEEEecCceEEEEecCCCceEEEEEEeceEEEEEeeeccccccccccccCCCCCCcceEEEEEE
Q psy8588         142 EPCTCDFPKP--NTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEY  219 (265)
Q Consensus       142 ~pC~cD~p~~--~~~v~vsiG~~~l~l~~~~~~~~~~e~~F~~trmr~Wrvt~~~~~~~~~~~~~~~~~~~~~l~f~FEY  219 (265)
                      +. .+  +++  .+.++++|+.++|.+-  .++...--..|+|+.|+.|...    .+             ..+.+.|. 
T Consensus       456 ~v-~~--~~~~~~~~l~LgV~~~GI~v~--~~~~k~~l~~~~~~~I~~~~~~----~~-------------~~f~i~~~-  512 (555)
T 3au4_A          456 DV-EC--KEGGFPQELWLGVSADAVSVY--KRGEGRPLEVFQYEHILSFGAP----LA-------------NTYKIVVD-  512 (555)
T ss_dssp             EE-EE--EESSSCSEEEEEECSSEEEEE--ETTCSSCSEEEEGGGEEEEEEE----ET-------------TEEEEEET-
T ss_pred             EE-Ee--cCCCCCceEEEEEcccceEEE--CCCCCeeEEEEEhhheeeecCC----CC-------------CEEEEEEC-
Confidence            64 32  222  2689999999999874  2332222358999999999753    11             12444443 


Q ss_pred             EccCCeeeEEEEecchHHHHHHHHHHHHHHHhhhhcCCCC
Q psy8588         220 LLAKNKLQWITIQSNQAILMSNLLQSIIDELVLKKTHEDE  259 (265)
Q Consensus       220 l~~~~~~~WIti~T~qa~lms~Clq~mv~E~l~~~~~~~~  259 (265)
                          ++  .+++.|++|.-|+.+++..+++++.++.+..+
T Consensus       513 ----~~--~l~f~T~qa~~i~~LI~~Yi~~l~~~r~~~~~  546 (555)
T 3au4_A          513 ----ER--ELLFETSEVVDVAKLMKAYISMIVKKRYSTTR  546 (555)
T ss_dssp             ----TE--EEEEECTTHHHHHHHHHHHHHHHHHHHCC---
T ss_pred             ----Cc--EEEEECCCHHHHHHHHHHHHHHHHHhhhccCC
Confidence                33  59999999999999999999999888766554

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=99.06  E-value=1.3e-09  Score=99.37  Aligned_cols=122  Identities=14%  Similarity=0.273  Sum_probs=97.4

Q ss_pred             CceeeeeeeeecccccccccCCcccchhhhhhhhhhccCCeEEeChhHHHHHHHHHhc----------------------
Q psy8588          63 SFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEAS----------------------  120 (265)
Q Consensus        63 ~~~iv~Rk~~wd~t~~~~L~~d~~al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~----------------------  120 (265)
                      ...+.+|+++|-+.... .+.++++..|+|.|+..|+-.|++.++.+.+.+|.+|+-+                      
T Consensus        92 ~~~l~fr~kf~~~~~~~-~l~~~~~~~l~y~Q~~~dil~g~~~~~~e~a~~Laal~~Qa~~Gd~~~~~~~~~~~~~~~~l  170 (314)
T 1h4r_A           92 PVTFHFLAKFYPENAEE-ELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELL  170 (314)
T ss_dssp             SEEEEEEESSCCSSHHH-HCCSHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCS
T ss_pred             CEEEEEEEEEecCCchh-hhcCHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHCCCCccccchhhcchhhcC
Confidence            45778999999766543 4567999999999999999999999999999999998753                      


Q ss_pred             --------------------------------CCHHHHHHHHHhCCCcCeEEcCCcccCCCCCCceEEEEEecCceEEEE
Q psy8588         121 --------------------------------GAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRI  168 (265)
Q Consensus       121 --------------------------------~~k~eyL~lar~l~~YG~v~f~pC~cD~p~~~~~v~vsiG~~~l~l~~  168 (265)
                                                      ..+.+||++|+++|+||.-.|+--  |  ..|+.+.|+|+.++|.+- 
T Consensus       171 P~~~~~~~~~~~~~~~~~I~~~~~~~~g~s~~eA~~~yL~~~~~lp~yG~~~f~v~--~--~~g~~~~LgI~~~Gi~v~-  245 (314)
T 1h4r_A          171 PKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIR--N--KKGTELLLGVDALGLHIY-  245 (314)
T ss_dssp             CHHHHTTSCCCHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTSTTTTCEEEEEE--E--TTCCEEEEEECSSEEEEE-
T ss_pred             CHHHHhhccCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCccCceEEEee--c--CCCCEEEEEEeCCceEEE-
Confidence                                            112479999999999999999765  2  357899999999998873 


Q ss_pred             ecCCCce-EEEEEEeceEEEEEee
Q psy8588         169 RSSEGEI-REGTFKVTRMRCWKIT  191 (265)
Q Consensus       169 ~~~~~~~-~e~~F~~trmr~Wrvt  191 (265)
                       .++... --..|.|+.|+.|.-.
T Consensus       246 -~~~~k~~~~~~f~w~~I~~~~~~  268 (314)
T 1h4r_A          246 -DPENRLTPKISFPWNEIRNISYS  268 (314)
T ss_dssp             -CTTCSSSCSEEEEGGGEEEEEEE
T ss_pred             -eCCCCcccceEEecccceEEEee
Confidence             332221 1369999999999655

>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B

Probab=99.05  E-value=8e-10  Score=94.50  Aligned_cols=140  Identities=21%  Similarity=0.265  Sum_probs=105.2

Q ss_pred             ccCCcccchhhhhhhhhhccCCeEEeChhHHHHHHHHHhc----------------------------------------
Q psy8588          81 LMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEAS----------------------------------------  120 (265)
Q Consensus        81 L~~d~~al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~----------------------------------------  120 (265)
                      +..|++++.|+|.|+..|+-.|.+.++.+.+.+|.+|+-+                                        
T Consensus        11 ~~~d~~~~~l~y~Q~~~dil~g~~~~~~~~a~~Laal~~qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~~~~~i~~~~~   90 (206)
T 1mix_A           11 DSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHK   90 (206)
T ss_dssp             HTSCHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGSTTCCHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHHHHCCccccCHHHHHHHHHHhhhheecCCCcccccCCccchHhhCCHHHhhcccHHHHHHHHH
Confidence            5789999999999999999999999999999999998742                                        


Q ss_pred             --------CCHHHHHHHHHhCCCcCeEEcCCcccCC-CCCCceEEEEEecCceEEEEecCCCceEEEEEEeceEEEEEee
Q psy8588         121 --------GAKKEYVDLARKLKYYGFIEFEPCTCDF-PKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT  191 (265)
Q Consensus       121 --------~~k~eyL~lar~l~~YG~v~f~pC~cD~-p~~~~~v~vsiG~~~l~l~~~~~~~~~~e~~F~~trmr~Wrvt  191 (265)
                              ..+.+||++|+++|.||.-.|+-...+. |...+.+.++|+.++|.+-  .+....--..|+|++|+.|..+
T Consensus        91 ~~~g~s~~~A~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~Lgi~~~Gi~~~--~~~~~~~l~~~~~~~I~~~~~~  168 (206)
T 1mix_A           91 NCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRV--DEKTKEVIQEWSLTNIKRWAAS  168 (206)
T ss_dssp             HTTTCCHHHHHHHHHHHHHHSTTTTCEEEEEEECCSSCSSCEEEEEEECSSEEEEE--ETTTCCEEEEEEGGGCCEEEEC
T ss_pred             HccCCCHHHHHHHHHHHHHhCcccCceEEEEEEccCCCCCcCcEEEEEcccceEEe--CCCCCceeeeeehhHeeecccC
Confidence                    1145799999999999999998766542 4344789999999998863  3333222458999999999775


Q ss_pred             eccccccccccccCCCCCCcceEEEEEEEccCCeeeEEEEecchHHHHHHHHH
Q psy8588         192 INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQ  244 (265)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~l~f~FEYl~~~~~~~WIti~T~qa~lms~Clq  244 (265)
                          .              .  .|.++.-...+.  -+.+.|+++..|+..+.
T Consensus       169 ----~--------------~--~f~i~~~~~~~~--~~~~~t~~~~~i~~Li~  199 (206)
T 1mix_A          169 ----P--------------K--SFTLDFGDYQDG--YYSVQTTEGEQIAQLIA  199 (206)
T ss_dssp             ----S--------------S--EEEEECGGGSSS--CEEEECSCHHHHHHHHH
T ss_pred             ----C--------------C--EEEEEeCcccce--EEEEECCcHHHHHHHHH
Confidence                1              1  244444222222  37788999988776554

>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A

Probab=99.03  E-value=1.7e-09  Score=99.41  Aligned_cols=213  Identities=15%  Similarity=0.129  Sum_probs=141.8

Q ss_pred             ceeeecccccceee-EEEeecCC----CCCCCCCeeee-ecccccccccee-eeecCceeeeeeeeecccccccccCCcc
Q psy8588          14 FQYVDLARKLKYYG-FIEFEPCT----CDFPKPNISSY-WDLEYDLELMCY-VALISFNMSSPLHYWDLEYDLELMTDPV   86 (265)
Q Consensus        14 ~~~l~L~~el~~Yf-lf~~~~~~----~dfe~Pyis~~-s~~~~n~el~~~-~a~~~~~iv~Rk~~wd~t~~~~L~~d~~   86 (265)
                      ++.|||+.+...|| ||...+..    .+.+.|+-... +.+ ..+++.-. .......+..|+++|-|........|++
T Consensus        34 ~e~lgL~~~~~~~FaL~~~~~~~e~~L~~~~~~~d~~~~W~~-~l~~~~~~~~~~~~p~l~~rr~~f~~~~~~~~~~d~~  112 (322)
T 4dxa_B           34 MEGMRLSQETQQYFTIWICSENLSLQLKPYHKPLQHVRDWPE-ILAELTNLDPQRETPQLFLRRDVRLPLEVEKQIEDPL  112 (322)
T ss_dssp             HTTSSCCTTGGGGEEEEEECSSCEEECCTTCCHHHHHHTHHH-HHHHHCSCCCCCCCCEEEEEECTTCCHHHHTTCCCHH
T ss_pred             HHHhCcCccccCeeEEEEECCccccccCccccHHHHHHHHHH-HHHHhcCCCCCCCceEEEEEEeecccccccccccCHH
Confidence            34589998889999 99998653    45556642211 110 00010000 0112358899999998744344568999


Q ss_pred             cchhhhhhhhhhccCCeEEeChhHHHHHHHHHhc----------------------------------------------
Q psy8588          87 GLDILYAQAVSDVHRESIVVHKDTKTILNQLEAS----------------------------------------------  120 (265)
Q Consensus        87 al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~----------------------------------------------  120 (265)
                      +..|+|.|+..|+-.|.+.++.+++.+|.+|+-+                                              
T Consensus       113 t~~l~y~Q~~~dil~G~~~c~~e~a~~LAAl~~q~e~Gd~~~~~~~~~~l~~~~l~~~lP~~~~~~~~~~~~~~I~~~h~  192 (322)
T 4dxa_B          113 AILILFDEARYNLLKGFYTAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTNRILHEYK  192 (322)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHCSCCHHHHSSSCSCHHHHTTTSCTTTTTTTGGGSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCcccCCHHHHHHHHHHHHHHHhCCCCcccccccccchhhhhhhCCHHHHhcCHHHHHHHHHHHHH
Confidence            9999999999999999999999998888776621                                              


Q ss_pred             ------CC-------HHHHHHHHHhCCCcCeEEcCCcccC---CC-CCCceEEEEEecCceEEEEecCCCceEEEEEEec
Q psy8588         121 ------GA-------KKEYVDLARKLKYYGFIEFEPCTCD---FP-KPNTKVVVNIGLREINFRIRSSEGEIREGTFKVT  183 (265)
Q Consensus       121 ------~~-------k~eyL~lar~l~~YG~v~f~pC~cD---~p-~~~~~v~vsiG~~~l~l~~~~~~~~~~e~~F~~t  183 (265)
                            |.       +.+||++||++|.||.-.|+-=...   .| .+++.++|+|..++|.+-  .+....--..++.+
T Consensus       193 ~~~~~~g~s~~~a~a~~~yL~~~~~lp~yG~~~f~v~~~~~~~g~~~~~~~~~LgV~~~Gv~v~--~~~tk~~l~~~~~~  270 (322)
T 4dxa_B          193 NLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYVGVNIKGLHLL--NMETKALLISLKYG  270 (322)
T ss_dssp             HHHC--CCCCCHHHHHHHHHHHHHTSTTTTCEEEEEEEECC-------EEEEEEEECSSEEEEE--ETTTCCEEEEEETT
T ss_pred             hcccccCCChhHHHHHHHHHHHHhcCCCcCeEEEEEEEeccCCCCccCCCeEEEEEccCceEEE--cCCCceeeeccccc
Confidence                  11       5689999999999998888653221   11 245688998988888873  33222223578999


Q ss_pred             eEEEEEeeeccccccccccccCCCCCCcceEEEEEEEccCCeeeEEEEecchHHHHHHHHHHHHHHHh
Q psy8588         184 RMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELV  251 (265)
Q Consensus       184 rmr~Wrvt~~~~~~~~~~~~~~~~~~~~~l~f~FEYl~~~~~~~WIti~T~qa~lms~Clq~mv~E~l  251 (265)
                      .|. |.++.    .              +-.|.+..-..+.   =+.+.|+|+.-|+.-+.+..+-+.
T Consensus       271 ~is-w~~s~----~--------------~~~f~i~~~~~~~---~~~~~t~q~~~i~~li~~~~~~~~  316 (322)
T 4dxa_B          271 CFM-WQLGD----T--------------DTCFQIHSMENKM---SFIVHTKQAGLVVKLLMKLNGQLM  316 (322)
T ss_dssp             SEE-EEECS----S--------------TTEEEEEESSSCC---EEEEECTTHHHHHHHHHHHHHTC-
T ss_pred             eeE-EeecC----C--------------CCEEEEEECCCCc---cEEEEeCcHHHHHHHHHHHHHHHh
Confidence            996 98761    1              1355555422122   378999999999998888776554

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=98.98  E-value=7.3e-09  Score=93.37  Aligned_cols=159  Identities=12%  Similarity=0.177  Sum_probs=113.0

Q ss_pred             cceeeecccccceee-EEEeecCC----CCCCCCCeeeeeccccccccceeeeecCceeeeeeeeecccccccccCCccc
Q psy8588          13 PFQYVDLARKLKYYG-FIEFEPCT----CDFPKPNISSYWDLEYDLELMCYVALISFNMSSPLHYWDLEYDLELMTDPVG   87 (265)
Q Consensus        13 ~~~~l~L~~el~~Yf-lf~~~~~~----~dfe~Pyis~~s~~~~n~el~~~~a~~~~~iv~Rk~~wd~t~~~~L~~d~~a   87 (265)
                      .++.|||...  .|| |+...+..    .|-+.|.......           ..+..++..|+++|-+..... +.++++
T Consensus        30 v~~~l~L~e~--~~FgL~~~~~~~~~~wLd~~~~l~~q~~~-----------~~~~~~l~fr~kf~~~~~~~~-l~~~~~   95 (294)
T 1ef1_A           30 VVKTIGLREV--WFFGLQYQDTKGFSTWLKLNKKVTAQDVR-----------KESPLLFKFRAKFYPEDVSEE-LIQDIT   95 (294)
T ss_dssp             HHHHHTCCCG--GGEEEEEEBTTSCEEECCSSSBGGGSCBC-----------CCSSEEEEEEESSCCSCHHHH-CCSHHH
T ss_pred             HHHHcCCCCc--ceeEEEEECCCCceeecccccCHHhhccC-----------CCCCEEEEEEEEEECCChHHh-hccHHH
Confidence            3567888753  466 88876433    2223332111000           012457788999996665433 457899


Q ss_pred             chhhhhhhhhhccCCeEEeChhHHHHHHHHHhc-----------------------------------------------
Q psy8588          88 LDILYAQAVSDVHRESIVVHKDTKTILNQLEAS-----------------------------------------------  120 (265)
Q Consensus        88 l~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~-----------------------------------------------  120 (265)
                      ..|+|.|+..|+-.|.+.++.+.+.+|.+|+-+                                               
T Consensus        96 ~~l~y~Q~~~dil~g~~~~~~e~a~~Laal~~q~~~Gd~~~~~~~~~~l~~~~~lP~~~~~~~~~~~~~~~~~I~~~~~~  175 (294)
T 1ef1_A           96 QRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEE  175 (294)
T ss_dssp             HHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHHHBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHhCCCCccccChhhccccccCCHHHHhhcCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988631                                               


Q ss_pred             -------CCHHHHHHHHHhCCCcCeEEcCCcccCCCCCCceEEEEEecCceEEEEecCCCc-eEEEEEEeceEEEEEee
Q psy8588         121 -------GAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGE-IREGTFKVTRMRCWKIT  191 (265)
Q Consensus       121 -------~~k~eyL~lar~l~~YG~v~f~pC~cD~p~~~~~v~vsiG~~~l~l~~~~~~~~-~~e~~F~~trmr~Wrvt  191 (265)
                             ..+.+||++|+++|+||.-.|+--  |  ..|+.+.++|+.++|.+-  .++++ .....|.|+.|+.|...
T Consensus       176 ~~g~s~~~A~~~yL~~~~~lp~yG~~~f~v~--~--~~g~~~~Lgv~~~Gi~v~--~~~~k~~~~~~f~w~~I~~~~~~  248 (294)
T 1ef1_A          176 HRGMLREDAVLEYLKIAQDLEMYGVNYFSIK--N--KKGSELWLGVDALGLNIY--EQNDRLTPKIGFPWSEIRNISFN  248 (294)
T ss_dssp             TTTCCHHHHHHHHHHHHTTSTTTTCEEEEEE--C--TTCCEEEEEEETTEEEEE--ETTCSSSCSEEEEGGGEEEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHcccCccCceEEeee--c--CCCCEEEEEEecCcEEEE--eCCCccccceEEEcccceEeeec
Confidence                   012359999999999999988853  2  367899999999998874  33332 12468999999999666

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=98.94  E-value=4.1e-09  Score=98.44  Aligned_cols=199  Identities=16%  Similarity=0.156  Sum_probs=130.1

Q ss_pred             cceeeecccccceee-EEEeecC-----CCCCCCCCeeeeeccccccccceeeeecCceeeeeeeeecccccccccCCcc
Q psy8588          13 PFQYVDLARKLKYYG-FIEFEPC-----TCDFPKPNISSYWDLEYDLELMCYVALISFNMSSPLHYWDLEYDLELMTDPV   86 (265)
Q Consensus        13 ~~~~l~L~~el~~Yf-lf~~~~~-----~~dfe~Pyis~~s~~~~n~el~~~~a~~~~~iv~Rk~~wd~t~~~~L~~d~~   86 (265)
                      .+++|||..  ..|| ||...+.     ..++..|.-.+.. + +.        .+...+.+|+++|-+. ...+..|++
T Consensus       115 v~~~l~L~e--~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~-q-~~--------~~~~~l~frvKf~~~d-~~~~~~D~~  181 (371)
T 3ivf_A          115 ICARIGITN--HDEYSLVRELMEEKKDDELNWLDHGRTLRE-Q-GV--------EEHETLLLRRKFFYSD-QNVDSRDPV  181 (371)
T ss_dssp             HHHHTTCSC--GGGEEEECCC----------CCCTTSBTGG-G-TC--------CTTCEEEEEECCCCBC-SSCBTTCHH
T ss_pred             HHHHcCCCC--ccccEEEEEecccccchHHHHHhcCchhHh-h-CC--------CCCceEEEEEEEecCC-ccccCCCHH
Confidence            356788875  5677 8877632     1333333211111 0 10        1245678899988433 233468999


Q ss_pred             cchhhhhhhhhhccCCeEEeChhHHHHHHHHHhc---C------------------------------------------
Q psy8588          87 GLDILYAQAVSDVHRESIVVHKDTKTILNQLEAS---G------------------------------------------  121 (265)
Q Consensus        87 al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~---~------------------------------------------  121 (265)
                      ++.|+|.|+..|+-.|.+.++.+.+.+|.+|+-+   |                                          
T Consensus       182 ~~~l~y~Q~~~dil~G~~~c~~e~a~~LAAl~~qae~Gd~~~~~~~~~~~~l~~~lP~~~~~~~~e~~I~~~~~~~~g~s  261 (371)
T 3ivf_A          182 QLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMS  261 (371)
T ss_dssp             HHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGTTSCHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHhhHHHhCceeecCHHHHHHHHHHHHHHHhCCCChhhcccchhcccccCCHHHhCchHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999988743   1                                          


Q ss_pred             ---CHHHHHHHHHhCCCcCeEEcCCcccCC--CCCCceEEEEEecCceEEEEecCCCceEEEEEEeceEEEEEeeecccc
Q psy8588         122 ---AKKEYVDLARKLKYYGFIEFEPCTCDF--PKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKITINKEE  196 (265)
Q Consensus       122 ---~k~eyL~lar~l~~YG~v~f~pC~cD~--p~~~~~v~vsiG~~~l~l~~~~~~~~~~e~~F~~trmr~Wrvt~~~~~  196 (265)
                         .+.+||++||++|.||.-.|+ |....  |.....+.++|+.++|.+-  .+....--..|+|+.|+.|...    .
T Consensus       262 ~~eA~~~yL~~~~~l~~yG~~~f~-vk~~~~g~~~~~~~~LgI~~~GI~v~--~~~~k~~l~~~~~~~I~~~~~~----~  334 (371)
T 3ivf_A          262 EIEAKVRYVKLARSLKTYGVSFFL-VKEKMKGKNKLVPRLLGITKECVMRV--DEKTKEVIQEWSLTNIKRWAAS----P  334 (371)
T ss_dssp             HHHHHHHHHHHHHHSTTTTCEEEE-EEEECTTSSCEEEEEEEECSSEEEEE--ETTTCCEEEEEEGGGCCEEEEE----T
T ss_pred             HHHHHHHHHHHHhcccccCcEEEE-EEEeccCCCCCccEEEEEcCCcEEEE--cCCCCceEEeeehhheeeeecC----C
Confidence               123599999999999976665 43211  2222468898999988773  3333222458999999999766    1


Q ss_pred             ccccccccCCCCCCcceEEEEEEEccCCeeeEEEEecchHHHHHHHHHHHHHH
Q psy8588         197 DNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDE  249 (265)
Q Consensus       197 ~~~~~~~~~~~~~~~~l~f~FEYl~~~~~~~WIti~T~qa~lms~Clq~mv~E  249 (265)
                                      -.|.++.-...  -+-+.+.|++|.-|+..+.+-++-
T Consensus       335 ----------------~~f~I~~~~~~--~~~~~~~T~~~~~I~~Li~~Yi~~  369 (371)
T 3ivf_A          335 ----------------KSFTLDFGDYQ--DGYYSVQTTEGEQIAQLIAGYIDI  369 (371)
T ss_dssp             ----------------TEEEEECGGGS--SSCEEEECSCHHHHHHHHHHHHHC
T ss_pred             ----------------CEEEEEECCcc--CcEEEEECChHHHHHHHHHHHHHH
Confidence                            13444331111  245789999999999888776653

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=98.93  E-value=2.2e-09  Score=106.77  Aligned_cols=160  Identities=15%  Similarity=0.216  Sum_probs=113.3

Q ss_pred             cceeeecccccceee-EEEeecCC----CCCCCCCeeeeeccccccccceeeeecCceeeeeeeeecccccccccCCccc
Q psy8588          13 PFQYVDLARKLKYYG-FIEFEPCT----CDFPKPNISSYWDLEYDLELMCYVALISFNMSSPLHYWDLEYDLELMTDPVG   87 (265)
Q Consensus        13 ~~~~l~L~~el~~Yf-lf~~~~~~----~dfe~Pyis~~s~~~~n~el~~~~a~~~~~iv~Rk~~wd~t~~~~L~~d~~a   87 (265)
                      +++.|||..  ..|| |+..++.+    .|...|....-..           ..+...+.+|+++|-+..... +.++++
T Consensus        33 V~~~LgL~e--~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~-----------~~~~~~L~FRvkfy~~~~~~~-l~d~~t   98 (575)
T 2i1j_A           33 VVKTIGLRE--VWFFGLQYTDSKGDLTWIKLYKKVMQQDVK-----------KENPLQFKFRAKFYPEDVADE-LIQEIT   98 (575)
T ss_dssp             HHHHHTCCC--GGGEEEEEEBTTSCEEECCTTSBGGGSCBC-----------CCSSEEEEEEESSCCSSHHHH-CCSHHH
T ss_pred             HHHHcCCCC--ccceeEEEEecCcchhHhhccccHHHhccc-----------CCCCeEEEEEEEEcCCChhhh-cCCHHH
Confidence            456788865  3667 88776433    2222222111000           012457789999997665433 457899


Q ss_pred             chhhhhhhhhhccCCeEEeChhHHHHHHHHHhc-----------------------------------------------
Q psy8588          88 LDILYAQAVSDVHRESIVVHKDTKTILNQLEAS-----------------------------------------------  120 (265)
Q Consensus        88 l~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~-----------------------------------------------  120 (265)
                      ..|+|.|+..||-.|++.++.+.+.+|.+|+-+                                               
T Consensus        99 ~~LlYlQvk~dIl~G~l~c~~e~a~~LAAL~lQae~GDy~~~~~~~~yl~~~~~lP~~vl~~~~~s~e~~~~~I~~~hk~  178 (575)
T 2i1j_A           99 LKLFYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVHGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQE  178 (575)
T ss_dssp             HHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTCCTTTTTTCCCSCHHHHHTBCCCHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcCCChhhcccccccccccCCHHHHhhcCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998643                                               


Q ss_pred             -------CCHHHHHHHHHhCCCcCeEEcCCcccCCCCCCceEEEEEecCceEEEEecCCCceEEEEEEeceEEEEEee
Q psy8588         121 -------GAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT  191 (265)
Q Consensus       121 -------~~k~eyL~lar~l~~YG~v~f~pC~cD~p~~~~~v~vsiG~~~l~l~~~~~~~~~~e~~F~~trmr~Wrvt  191 (265)
                             ..+.+||++|+++|+||.-.|+-.  |  ..|+.++|+|+..+|.+- ...++..--..|.|+.|+.|...
T Consensus       179 l~G~s~~eA~~~yL~~a~~lp~YG~~~F~vk--d--~~g~~l~LGV~~~GI~v~-~~~~k~~~l~~f~w~~I~~isf~  251 (575)
T 2i1j_A          179 HRGMLREDAMMEYLKIAQDLEMYGVNYFEIR--N--KKNTELWLGVDALGLNIY-EKDDKLTPKIGFPWSEIRNISFN  251 (575)
T ss_dssp             GTTCCHHHHHHHHHHHHTTSTTTTCEEEEEE--C--TTCCEEEEEECSSEEEEE-ETTCSSSCSEEEEGGGEEEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHhccccCCEEEEEE--e--cCCCEEEEEEcCCeeEEE-eCCCCcccceEecHHHhhcccCC
Confidence                   112469999999999999988863  2  367999999999999874 32222111357999999999655

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A

Probab=98.86  E-value=4.4e-09  Score=95.94  Aligned_cols=157  Identities=14%  Similarity=0.189  Sum_probs=111.7

Q ss_pred             cceeeecccccceee-EEEeecCC-CCCCCCCeeeeeccccccccceeeeecCceeeeeeeeecccccccccCCcccchh
Q psy8588          13 PFQYVDLARKLKYYG-FIEFEPCT-CDFPKPNISSYWDLEYDLELMCYVALISFNMSSPLHYWDLEYDLELMTDPVGLDI   90 (265)
Q Consensus        13 ~~~~l~L~~el~~Yf-lf~~~~~~-~dfe~Pyis~~s~~~~n~el~~~~a~~~~~iv~Rk~~wd~t~~~~L~~d~~al~L   90 (265)
                      ++++|||.+  ..|| |+..++.. ..+-.|          ++.+.=.+..+...+..|+++|-+...  .+.++++..|
T Consensus        47 v~~~l~L~e--~~~FgL~~~~~~~~~~wLd~----------~k~i~~q~~~~~~~l~frvkfy~~~~~--~l~~~~tr~l  112 (296)
T 3qij_A           47 VCEHLNLLE--EDYFGLAIWDNATSKTWLDS----------AKEIKKQVRGVPWNFTFNVKFYPPDPA--QLTEDITRYY  112 (296)
T ss_dssp             HHHHHTCSS--GGGEEEEEEEETTEEEECCT----------TSBHHHHC---CCEEEEEESSCCSCGG--GSSCHHHHHH
T ss_pred             HHHHcCCCC--cceeEEEEEcCCCccchhcc----------chhHHHhcCCCCcEEEEEEEEeCCCch--hccCHHHHHH
Confidence            456788875  5666 88776532 011111          111110011134678899999966533  5678899999


Q ss_pred             hhhhhhhhccCCeEEeChhHHHHHHHHHhc---CC-------------------------------------------HH
Q psy8588          91 LYAQAVSDVHRESIVVHKDTKTILNQLEAS---GA-------------------------------------------KK  124 (265)
Q Consensus        91 lY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~---~~-------------------------------------------k~  124 (265)
                      +|.|+..|+-.|.+.++.+.+.+|.+|+-+   |+                                           +.
T Consensus       113 ~ylQ~~~dil~G~~~c~~e~a~~LAAl~~Qae~Gd~~~~~~~~~yl~~~~~~P~~~~~~~~~I~~~h~~~~g~s~~eA~~  192 (296)
T 3qij_A          113 LCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADL  192 (296)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHCSCCHHHHTTCCCTTSCCSSSCCHHHHHHHHHHHHTCCSCCHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhcCCCCccccchhhCcHhhcCCcCHHHHHHHHHHHHHHccCCCHHHHHH
Confidence            999999999999999999999999987743   11                                           23


Q ss_pred             HHHHHHHhCCCcCeEEcCCcccCCCCCCceEEEEEecCceEEEEecCCCceEEEEEEeceEEEEEee
Q psy8588         125 EYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT  191 (265)
Q Consensus       125 eyL~lar~l~~YG~v~f~pC~cD~p~~~~~v~vsiG~~~l~l~~~~~~~~~~e~~F~~trmr~Wrvt  191 (265)
                      +||++||++|.||.-.|+-  -|  ..++.++++|+.++|.+-  .+  ..+-..|.|+.|+.|.-.
T Consensus       193 ~yL~~a~~l~~yG~~~f~v--k~--~~~~~~~LgV~~~Gi~v~--~~--~~kl~~f~w~~I~~~s~~  251 (296)
T 3qij_A          193 EFLENAKKLSMYGVDLHKA--KD--LEGVDIILGVCSSGLLVY--KD--KLRINRFPWPKVLKISYK  251 (296)
T ss_dssp             HHHHHHTTSTTTTCEEEEE--EC--TTSCEEEEEECSSEEEEE--ET--TEEEEEEEGGGEEEEEEE
T ss_pred             HHHHHHhcccccCceEEEE--Ec--CCCCEEEEEECCCeEEEE--eC--CCeEEEEEhhhcCEEEec
Confidence            5999999999999988863  22  367899999999999884  22  245789999999999655

>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}

Probab=98.72  E-value=6.3e-08  Score=84.37  Aligned_cols=150  Identities=23%  Similarity=0.301  Sum_probs=105.2

Q ss_pred             ccCCcccchhhhhhhhhhccCCeEEeChhHHHHHHHHHhc---C------------------------------------
Q psy8588          81 LMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEAS---G------------------------------------  121 (265)
Q Consensus        81 L~~d~~al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~---~------------------------------------  121 (265)
                      ...||+++.|+|.|+..|+-.|.+.++.+.+.+|.+|+-+   |                                    
T Consensus        22 ~~~Dp~~l~l~ylQ~~~dil~G~~~~~~e~a~~LAal~~Qae~Gd~~~~~~~~~~~~l~~~lP~~~~~~~~~~~I~~~h~  101 (222)
T 4f7g_A           22 SSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHK  101 (222)
T ss_dssp             ----CCHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCSSCSCGGGTSCGGGGGGCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHCCCCchhcccCccchhhccCHHHHhhhhHHHHHHHHH
Confidence            4678999999999999999999999999999999988754   1                                    


Q ss_pred             ---------CHHHHHHHHHhCCCcCeEEcCCcccC-CCCCCceEEEEEecCceEEEEecCCCceEEEEEEeceEEEEEee
Q psy8588         122 ---------AKKEYVDLARKLKYYGFIEFEPCTCD-FPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT  191 (265)
Q Consensus       122 ---------~k~eyL~lar~l~~YG~v~f~pC~cD-~p~~~~~v~vsiG~~~l~l~~~~~~~~~~e~~F~~trmr~Wrvt  191 (265)
                               .+.+||++|+++|.||.-.|+-=... -+.....++++|+.++|.+  ..+....--..|+|+.|+.|...
T Consensus       102 ~~~g~s~~eA~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~LgI~~~GI~v--~~~~tk~~l~~~~~~~I~~~~~~  179 (222)
T 4f7g_A          102 NCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMR--VDEKTKEVIQEWSLTNIKRWAAS  179 (222)
T ss_dssp             TTTTCCHHHHHHHHHHHHHTSTTTTCEEEEEEEECTTSSCEEEEEEEECSSEEEE--ECTTTCCEEEEEEGGGCCEEEEC
T ss_pred             hccCCCHHHHHHHHHHHHhhccccCcEEEEEEEecCCCCCCCCEEEEEcCCcEEE--EcCCCCceeEeccHHHeeeeccC
Confidence                     02349999999999998888653332 2223468899999998877  33332222457899999999755


Q ss_pred             eccccccccccccCCCCCCcceEEEEEEEccCCeeeEEEEecchHHHHHHHHHHHHHHHhhhh
Q psy8588         192 INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELVLKK  254 (265)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~l~f~FEYl~~~~~~~WIti~T~qa~lms~Clq~mv~E~l~~~  254 (265)
                          .              .  .|.++.-...+  .-+++.|+|+--|+..+..-++-++.++
T Consensus       180 ----~--------------~--~f~I~~~~~~~--~~~~~~T~q~~~I~~Li~~Yi~~~~~~r  220 (222)
T 4f7g_A          180 ----P--------------K--SFTLDFGDYQD--GYYSVQTTEGEQIAQLIAGYIDIILKKK  220 (222)
T ss_dssp             ----S--------------S--EEEEECCTTSS--SCEEEECSCHHHHHHHHHHHHHHTC---
T ss_pred             ----C--------------C--EEEEEECCccc--eEEEEECCcHHHHHHHHHHHHHHHHHhh
Confidence                1              1  23333312112  1388999999999999999987655544

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.56  E-value=8e-07  Score=89.58  Aligned_cols=167  Identities=14%  Similarity=0.162  Sum_probs=121.0

Q ss_pred             CceeeeeeeeecccccccccCCcccchhhhhhhhhhccCCeEEeChh-HHHHHHHHHhc---C-----------------
Q psy8588          63 SFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKD-TKTILNQLEAS---G-----------------  121 (265)
Q Consensus        63 ~~~iv~Rk~~wd~t~~~~L~~d~~al~LlY~QAv~Dv~~gwI~~~~e-q~~qL~~lq~~---~-----------------  121 (265)
                      ...+..|+++|-+.  .....|+++..|+|.|+..|+-.|.+.++.+ ++.+|.+|+-+   |                 
T Consensus       347 ~~~L~FRvkff~p~--~~~~~d~it~~LlYlQ~k~dIl~Grlpc~~E~~a~~LAAl~~Qae~Gd~~~~~~~~~~L~~~lP  424 (655)
T 3pvl_A          347 PWRLFFRKEVFTPW--HNPSEDNVATNLIYQQVVRGVKFGEYRCEKEDDLAELASQQYFVDYGSEMILERLLSLVPTYIP  424 (655)
T ss_dssp             CCEEEEEECCCCTT--CCGGGCHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHSC
T ss_pred             CeEEEEEEEEecCC--cccccCHHHHHHHHHHHhcccccCccCCChHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhCC
Confidence            56889999999763  3346889999999999999999999999866 88888876421   0                 


Q ss_pred             -----------------------------------CHHHHHHHH-HhCCCcCeEEcCCcccCCC-CCCceEEEEEecCce
Q psy8588         122 -----------------------------------AKKEYVDLA-RKLKYYGFIEFEPCTCDFP-KPNTKVVVNIGLREI  164 (265)
Q Consensus       122 -----------------------------------~k~eyL~la-r~l~~YG~v~f~pC~cD~p-~~~~~v~vsiG~~~l  164 (265)
                                                         .+.+||++| +++|.||.-.|+-=...-| -|++.++|+|...+|
T Consensus       425 ~~~l~~~~~~~~w~~~I~~~hkk~~~~~~g~s~~eAk~~yL~~a~~~lp~YG~~fF~vk~~~g~~lp~~~l~LgVn~~GV  504 (655)
T 3pvl_A          425 DREITPLKNLEKWAQLAIAAHKKGIYAQRRTDSQKVKEDVVNYARFKWPLLFSRFYEAYKFSGPPLPKSDVIVAVNWTGV  504 (655)
T ss_dssp             GGGCCSSSCHHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHHCTTTSCEEEEEEEEESSCCSCSEEEEEEETTEE
T ss_pred             HHHHhccCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhccccCcEEEEEEecCCCCCCCccEEEEEcCCce
Confidence                                               123499999 7999999998875332211 134689999999998


Q ss_pred             EEEEecCCCceEEEEEEeceEEEEEeeeccccccccccccCCCCCCcceEEEEEEEccCCeeeEEEEecchHHHHHHHHH
Q psy8588         165 NFRIRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQ  244 (265)
Q Consensus       165 ~l~~~~~~~~~~e~~F~~trmr~Wrvt~~~~~~~~~~~~~~~~~~~~~l~f~FEYl~~~~~~~WIti~T~qa~lms~Clq  244 (265)
                      .+  ..+..+ .-..|+|+.|+.|...    .++          ......|.+.- ....+   +++.|++|.-++.-++
T Consensus       505 ~v--~d~~~k-~ll~f~~~eI~~is~~----~~~----------~~~~~~ftl~~-~~~~~---~~F~T~~a~~I~~LI~  563 (655)
T 3pvl_A          505 YF--VDEQEQ-VLLELSFPEIMAVSSS----RGT----------KMMAPSFTLAT-IKGDE---YTFTSSNAEDIRDLVV  563 (655)
T ss_dssp             EE--ECTTCC-EEEEEEGGGEEEEEEE----CCC----------SSSCCEEEEEE-TTSCE---EEEECTTHHHHHHHHH
T ss_pred             EE--EcCCCc-eEEEechhHceEEecc----Ccc----------cccccEEEEEe-ccCce---EEEEcCCHHHHHHHHH
Confidence            76  333332 2247999999999766    110          01124555553 22233   7999999999999999


Q ss_pred             HHHHHHhh
Q psy8588         245 SIIDELVL  252 (265)
Q Consensus       245 ~mv~E~l~  252 (265)
                      ..++++..
T Consensus       564 ~yi~~Lk~  571 (655)
T 3pvl_A          564 TFLEGLRK  571 (655)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99999854

>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A

Probab=98.06  E-value=5.1e-05  Score=71.12  Aligned_cols=170  Identities=14%  Similarity=0.177  Sum_probs=115.9

Q ss_pred             CceeeeeeeeecccccccccCCcccchhhhhhhhhhccCCeE-EeChhHHHHHHHHHhc-----------CC--------
Q psy8588          63 SFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESI-VVHKDTKTILNQLEAS-----------GA--------  122 (265)
Q Consensus        63 ~~~iv~Rk~~wd~t~~~~L~~d~~al~LlY~QAv~Dv~~gwI-~~~~eq~~qL~~lq~~-----------~~--------  122 (265)
                      ...+.+|++|+-......+..|++++.|+|.|+..|+-.|.+ .++.+.+.+|.+|+-+           .+        
T Consensus        89 ~~~l~fRvrF~~~~~~~l~~~D~~t~~~~y~Q~r~Dil~g~~~~~~~e~al~LAaL~~q~~~gD~~~~~~~~k~~~~~l~  168 (375)
T 2al6_A           89 EWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVLE  168 (375)
T ss_dssp             GEEEEEEECCCCTTHHHHHTTCHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHTTTSCTTGGGSHHHHHHHH
T ss_pred             ceEEEEEEEEecCCHHHhhhcCHHHHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHHHhhhccchhhcccCCHHHhh
Confidence            356789999985544444456888999999999999999984 5788999998888653           11        


Q ss_pred             -----------------------------------------HHHHHHHHHhCCCcCeEEcCCcccCCCCCCceEEEEEec
Q psy8588         123 -----------------------------------------KKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGL  161 (265)
Q Consensus       123 -----------------------------------------k~eyL~lar~l~~YG~v~f~pC~cD~p~~~~~v~vsiG~  161 (265)
                                                               +.+||++|+++|.||.-.|+ |.... .++..+.+.||-
T Consensus       169 k~~~l~~flP~~~~~~~~~~~~~k~I~~~~k~~~g~s~~eAk~~yL~~~~~l~~yG~~~F~-v~~~~-~~~~~~~l~lg~  246 (375)
T 2al6_A          169 KDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFK-CALGS-SWIISVELAIGP  246 (375)
T ss_dssp             HTTCGGGTSCHHHHHSSCHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTTCCCSCEEEE-EEECS-SSCEEEEEEEET
T ss_pred             hcccHHHhCCHHHHHHhChHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhhcccCCcEEEE-EeecC-CCCcceEEEEec
Confidence                                                     01399999999999999998 33221 234556677777


Q ss_pred             C-ceEEEEecCCCceEEEEEEeceEEEEEeeeccccccccccccCCCCCCcceEEEEEEEccCCeeeEEEEec-chHHHH
Q psy8588         162 R-EINFRIRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQS-NQAILM  239 (265)
Q Consensus       162 ~-~l~l~~~~~~~~~~e~~F~~trmr~Wrvt~~~~~~~~~~~~~~~~~~~~~l~f~FEYl~~~~~~~WIti~T-~qa~lm  239 (265)
                      + +|++.  .+++..-...|.|+.|+.|.+....+.             +...-|.... .+..++.-+...| .+|--|
T Consensus       247 ~~GI~~~--~~~~~~~~~~~~f~~I~~i~~~~~~~~-------------~~~~~~~I~v-~~~~~~~~f~~~t~~~a~~i  310 (375)
T 2al6_A          247 EEGISYL--TDKGANPTHLADFNQVQTIQYSNSEDK-------------DRKGMLQLKI-AGAPEPLTVTAPSLTIAENM  310 (375)
T ss_dssp             TTEEEEE--SSTTSCEEEEECGGGEEEEEEECCSSS-------------CCCEEEEEEE-TTCSSCEEEEESSHHHHHHH
T ss_pred             CCCEEEE--eCCCCceEEEechhHccEEEEEecccc-------------CCceEEEEEE-CCCCCcEEEEeCCHHHHHHH
Confidence            5 66664  334433456799999999988632110             1123444443 3334666778888 488888


Q ss_pred             HHHHHHHHHHH
Q psy8588         240 SNLLQSIIDEL  250 (265)
Q Consensus       240 s~Clq~mv~E~  250 (265)
                      ..++..-..-.
T Consensus       311 ~~Li~gY~rl~  321 (375)
T 2al6_A          311 ADLIDGYCRLV  321 (375)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHhhheEEe
Confidence            88877655443

>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}

Probab=97.88  E-value=4.7e-05  Score=72.31  Aligned_cols=163  Identities=15%  Similarity=0.102  Sum_probs=112.9

Q ss_pred             CceeeeeeeeecccccccccCCcccchhhhhhhhhhccCCe-EEeChhHHHHHHHHHhc-----------CC--------
Q psy8588          63 SFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRES-IVVHKDTKTILNQLEAS-----------GA--------  122 (265)
Q Consensus        63 ~~~iv~Rk~~wd~t~~~~L~~d~~al~LlY~QAv~Dv~~gw-I~~~~eq~~qL~~lq~~-----------~~--------  122 (265)
                      ...+.+|++|+=......+-.|+++++++|.|+..|+-.|+ ..++.+.+.+|.+|+-+           .+        
T Consensus       109 ~~~~~fRvrF~p~d~~~l~~~D~~~~~ylY~Q~r~D~l~g~~~~~~~e~al~LAaL~~q~~~gd~~~~a~~~k~~~~~l~  188 (392)
T 4eku_A          109 EWRYDLQIRYLPEDFMESLKEDRTTLLYFYQQLRNDYMQRYASKVSEGMALQLGCLELRRFFKDMPHNALDKKSNFELLE  188 (392)
T ss_dssp             GEEEEEEECSCCTTTHHHHTTCHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHTTTSCTTGGGSHHHHHHHH
T ss_pred             ceEEEEEEEEEcCCHHHhhhcChHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhccCCCHHHHh
Confidence            34678999987332233345789999999999999999998 46788888888888542           11        


Q ss_pred             -----------------------------------------HHHHHHHHHhCCCcCeEEcCCcccCCCCCCceEEEEEec
Q psy8588         123 -----------------------------------------KKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGL  161 (265)
Q Consensus       123 -----------------------------------------k~eyL~lar~l~~YG~v~f~pC~cD~p~~~~~v~vsiG~  161 (265)
                                                               |..||+.++++|.||.-.|+--...-  ++..+.+.||-
T Consensus       189 k~~~lk~flP~~l~~~ik~k~~rk~I~~~~kk~~~ls~~eakl~YL~~l~~Lp~yG~e~F~vk~~s~--~~~~~~L~Vg~  266 (392)
T 4eku_A          189 KEVGLDLFFPKQMQENLKPKQFRKMIQQTFQQYASLREEECVMKFFNTLAGFANIDQETYRCELIQG--WNITVDLVIGP  266 (392)
T ss_dssp             HHTCGGGTSCHHHHHHSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTSSCCSCEEEEEEEESS--SCCCEEEEEET
T ss_pred             hhccHHHhcCHHHHhhcCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhccCcEEEEEEeccC--CcceeEEEEcC
Confidence                                                     12299999999999999998664322  34567777888


Q ss_pred             CceEEEEecCCCceEEEEEEeceEEEEEeeeccccccccccccCCCCCCcceEEEEEEEccCC-eeeEEEEec-chHHHH
Q psy8588         162 REINFRIRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKN-KLQWITIQS-NQAILM  239 (265)
Q Consensus       162 ~~l~l~~~~~~~~~~e~~F~~trmr~Wrvt~~~~~~~~~~~~~~~~~~~~~l~f~FEYl~~~~-~~~WIti~T-~qa~lm  239 (265)
                      ++|++.  .+.+..-...+.|+.|..|++..    ++           +..--|....  .+. .+.-|.+.| ++|--|
T Consensus       267 ~GIs~~--~~k~~~~~~~~~f~~I~~Is~~~----~s-----------~~~~~v~I~~--~~~~~~l~~~~~s~~~A~~~  327 (392)
T 4eku_A          267 KGIRQL--TSQDAKPTCLAEFKQIRSIRCLP----LE-----------EGQAVLQLGI--EGAPQALSIKTSSLAEAENM  327 (392)
T ss_dssp             TEEEEE--CSSCSCCEEEECGGGBCCCCEEE----ET-----------TTEEEEEECB--TTCSSCEEEEESCHHHHHHH
T ss_pred             CcEEEE--CCCCCceeEEechHHceEEEEEe----cc-----------CCceEEEEEE--CCCCcceEEEeCCHHHHHHH
Confidence            888775  23443346688999999998873    10           1112333333  333 466788888 889888


Q ss_pred             HHHHHHH
Q psy8588         240 SNLLQSI  246 (265)
Q Consensus       240 s~Clq~m  246 (265)
                      ...+..=
T Consensus       328 ~~LidGY  334 (392)
T 4eku_A          328 ADLIDGY  334 (392)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776653

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=91.56  E-value=1.3  Score=43.91  Aligned_cols=127  Identities=13%  Similarity=0.129  Sum_probs=90.2

Q ss_pred             CceeeeeeeeecccccccccCCcccchhhhhhhhhhccCCeEE-eChhHHHHHHHHHhcC--------------------
Q psy8588          63 SFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIV-VHKDTKTILNQLEASG--------------------  121 (265)
Q Consensus        63 ~~~iv~Rk~~wd~t~~~~L~~d~~al~LlY~QAv~Dv~~gwI~-~~~eq~~qL~~lq~~~--------------------  121 (265)
                      ..+.-+|.+|+=......+..|..++.++|.|...|+-.|.+. +..+.+-+|.+|.-+.                    
T Consensus        89 ~~~~~~rvrf~p~~~~~l~~~d~~~~~ylf~Q~r~D~~~~~~~~~~~~~al~La~l~~~~~~~d~~~~a~~~~~~~~~~~  168 (656)
T 2j0j_A           89 EWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVLE  168 (656)
T ss_dssp             SEEEEEEECCCCTTHHHHHHTCHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHTTTSCTTGGGSHHHHHHHH
T ss_pred             ceEEEEEEEEcCCCHHHHHhccHHHHHHHHHHHHHHHHhcccccccHhHHHHHHHHHHHHHhhhccchhhhcCCCHHHHH
Confidence            4577899999966666556678889999999999999999874 6678888777666310                    


Q ss_pred             -----------------C-----------------------HHHHHHHHHhCCCcCeEEcCCcccCCCCCCceEEEEEec
Q psy8588         122 -----------------A-----------------------KKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGL  161 (265)
Q Consensus       122 -----------------~-----------------------k~eyL~lar~l~~YG~v~f~pC~cD~p~~~~~v~vsiG~  161 (265)
                                       +                       +.+||+.++.++.||...|+.-  +...-...+.|.||.
T Consensus       169 k~~~~~~fiP~~~~~~~~~~~~~k~i~~~~k~~~~~~~~~~~lk~l~~l~~~~~yg~e~f~~~--~~~g~~~~~~l~vg~  246 (656)
T 2j0j_A          169 KDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCA--LGSSWIISVELAIGP  246 (656)
T ss_dssp             HTTTGGGTSCHHHHHHSCHHHHHHHHHHHHGGGTTCCHHHHHHHHHHHHGGGCCTTSEEEEEE--EESSSEEEEEEEEET
T ss_pred             hhccHHHhCCHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccccCceEEeec--cCCCCcccEEEEECC
Confidence                             0                       1238999999999999999842  222122248888888


Q ss_pred             C-ceEEEEecCCCceEEEEEEeceEEEEEeeec
Q psy8588         162 R-EINFRIRSSEGEIREGTFKVTRMRCWKITIN  193 (265)
Q Consensus       162 ~-~l~l~~~~~~~~~~e~~F~~trmr~Wrvt~~  193 (265)
                      + +|+.+.  +.+..-...+.++.|+...++..
T Consensus       247 ~~GI~~~~--~~~~~~~~~~~f~~I~~I~~~~~  277 (656)
T 2j0j_A          247 EEGISYLT--DKGANPTHLADFNQVQTIQYSNS  277 (656)
T ss_dssp             TTEEEECC--SSSSCCEEEECGGGEEEBCEEEC
T ss_pred             CCCeEEEC--CCCCCceecccccceeEEEEeec
Confidence            7 777653  23322245678899988877744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1mixa1	114	Talin {Chicken (Gallus gallus) [TaxId: 9031]}	96.37
d1gg3a1	106	Erythroid membrane protein 4.1R {Human (Homo sapie	94.65
d2al6a1	123	Focal adhesion kinase 1 {Chicken (Gallus gallus) [	86.28
d1h4ra1	111	Merlin {Human (Homo sapiens) [TaxId: 9606]}	85.23
d1ef1a1	111	Moesin {Human (Homo sapiens) [TaxId: 9606]}	82.21

>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Talin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.37  E-value=0.00059  Score=51.32  Aligned_cols=39  Identities=31%  Similarity=0.389  Sum_probs=36.8

Q ss_pred             cCCcccchhhhhhhhhhccCCeEEeChhHHHHHHHHHhc
Q psy8588          82 MTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEAS  120 (265)
Q Consensus        82 ~~d~~al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~  120 (265)
                      ..|++++.++|.|+..||-.|-+.++.+++.+|.+|+-+
T Consensus        12 ~~D~~~~~l~y~Q~k~dil~G~~~~~~~~a~~Laal~~Q   50 (114)
T d1mixa1          12 SRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQ   50 (114)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999998866

>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.0069  Score=44.87  Aligned_cols=40  Identities=15%  Similarity=0.111  Sum_probs=35.3

Q ss_pred             ccCCcccchhhhhhhhhhccCCeEEeChhHHHHHHHHHhc
Q psy8588          81 LMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEAS  120 (265)
Q Consensus        81 L~~d~~al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~  120 (265)
                      ++.+++.-.++|.|+..|+-.|-+.++.+.+.+|.+|..+
T Consensus         5 ~L~~e~Tr~l~ylQlr~~i~~G~~~~~~~~a~~Laal~~Q   44 (106)
T d1gg3a1           5 QLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQ   44 (106)
T ss_dssp             GSSCHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence            4566777779999999999999999999999999998765

>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Focal adhesion kinase 1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=86.28  E-value=0.041  Score=41.36  Aligned_cols=43  Identities=23%  Similarity=0.217  Sum_probs=36.5

Q ss_pred             cccccCCcccchhhhhhhhhhccCCeE-EeChhHHHHHHHHHhc
Q psy8588          78 DLELMTDPVGLDILYAQAVSDVHRESI-VVHKDTKTILNQLEAS  120 (265)
Q Consensus        78 ~~~L~~d~~al~LlY~QAv~Dv~~gwI-~~~~eq~~qL~~lq~~  120 (265)
                      ...+..|++++.++|.|+..|+-+|-+ .+..+.+.+|.+|+-+
T Consensus         4 ~~~~~~D~~t~~~~y~Q~~~d~l~g~~~~~~~e~Ai~Laal~~Q   47 (123)
T d2al6a1           4 LNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIR   47 (123)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            345678999999999999999999977 4777889999998853

>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.23  E-value=0.13  Score=37.68  Aligned_cols=38  Identities=11%  Similarity=0.249  Sum_probs=35.0

Q ss_pred             CCcccchhhhhhhhhhccCCeEEeChhHHHHHHHHHhc
Q psy8588          83 TDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEAS  120 (265)
Q Consensus        83 ~d~~al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~  120 (265)
                      .+++...++|.|+..|+-.|-+.++.+.+.+|.+|+.+
T Consensus         7 ~~e~tr~l~ylQlr~dil~G~~~~~~~~a~~LAal~~Q   44 (111)
T d1h4ra1           7 VQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQ   44 (111)
T ss_dssp             CSHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            46788889999999999999999999999999998876

>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.21  E-value=0.21  Score=36.58  Aligned_cols=38  Identities=11%  Similarity=0.243  Sum_probs=35.2

Q ss_pred             CCcccchhhhhhhhhhccCCeEEeChhHHHHHHHHHhc
Q psy8588          83 TDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEAS  120 (265)
Q Consensus        83 ~d~~al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~  120 (265)
                      .+++...++|.|+..|+-.|-+.++.+++.+|.+|..+
T Consensus         7 ~~e~tr~l~ylQlr~dil~G~~~~~~~~a~~Laal~~Q   44 (111)
T d1ef1a1           7 IQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQ   44 (111)
T ss_dssp             CSHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Confidence            46888889999999999999999999999999999877