Psyllid ID: psy8618

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGKETQ
Secondary Structure (PSIPRED)
cEEEEcccccccccEEEEEEEEEEcccccccEEEEEEEEEEcccccccccccccEEEEEEEcccccccEEEEEEccccccccccEEEEEEEEcccccccccEEEcccccEEEEccccccccccEEEEEEEEEEccccccEEEEEEEEEEEEccccccEEEcccEEEEEEEEccccccccEEEEEEccccccccccEEEccEEEEEEccccccccccEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccHHHHccEEEEEEEEcccccccccEEEEEEEEEEcccccccEccccEEEEEccccccccEEEEEEEEEEcccccccEEEEEEccccccccccEEEEcccccEEEEEccccHHHcccEEEEEEEEcccccccccEEEEEEEEEEcccccccccccEEEEEEEEEccccccccEEEEEEccccccccEEEEcccccEEEEEccccHHHHccEEEEEEEEccccccc
Coil and Loop (DISEMBL)
eistrepldreaRSSHELVAEardqgspprssrvaVKISvtdvndnapelvdpqedvisvreeqppgteVVRAravdkddgsnatiSYSILkgrdtdgygvftidpisgvirtksvldhedrSIYRIAVAatdngfpsrQTVRLLRVEVldlndnrptftsssllfkvsasdpdcgvnAMVNYtlgespsrtnhfyMKSVsgeicisqdldfesrssyefpvvatdrgketq
Flexible Loop (DISEMBL)
eistrepldrearsshelvaeardqgspprssrvavkisvtdvndnapelvdpqedvisvreeqppgtevvraravdkddgsnatisysilkgrdtdgygvftidpisgvirtksvldheDRSIYRIAvaatdngfpsrqTVRLLRVEvldlndnrptftsssllfkvsasdpdCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDfesrssyefpvvatdrgketq
Low Complexity Region (SEG)
EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGKETQ
Disordered region (IsUnstruct)
************************************************************************************TISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDF********************
Disordered Region (DISOPRED)
EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGK***
Disordered Region (DISEMBL)
**********************************AVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVV*********
Disordered Region (DISPRO)
EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDR*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGKETQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q24292	3503	Protein dachsous OS=Droso	yes	N/A	0.642	0.042	0.755	6e-71
Q6V0I7	4981	Protocadherin Fat 4 OS=Ho	yes	N/A	0.939	0.043	0.370	3e-31
Q2PZL6	4981	Protocadherin Fat 4 OS=Mu	no	N/A	0.939	0.043	0.357	6e-31
Q9NYQ7	3312	Cadherin EGF LAG seven-pa	no	N/A	0.948	0.066	0.362	2e-30
Q9HCU4	2923	Cadherin EGF LAG seven-pa	no	N/A	0.943	0.074	0.386	2e-30
Q96JQ0	3298	Protocadherin-16 OS=Homo	no	N/A	0.943	0.066	0.365	2e-30
P33450	5147	Cadherin-related tumor su	no	N/A	0.974	0.043	0.358	3e-30
Q91ZI0	3301	Cadherin EGF LAG seven-pa	no	N/A	0.948	0.066	0.358	5e-30
O88278	3313	Cadherin EGF LAG seven-pa	no	N/A	0.948	0.066	0.358	6e-30
Q9R0M0	2920	Cadherin EGF LAG seven-pa	no	N/A	0.974	0.077	0.353	8e-29

>sp|Q24292|DS_DROME Protein dachsous OS=Drosophila melanogaster GN=ds PE=1 SV=3

 Score =  266 bits (681), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 151/168 (89%)

Query: 1    EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
            EISTREPLDRE R  ++LV EARDQG+P RS+RV V+I V+DVNDNAPE+ DPQEDV+SV
Sbjct: 1154 EISTREPLDRELRELYDLVVEARDQGTPVRSARVPVRIHVSDVNDNAPEIADPQEDVVSV 1213

Query: 61   REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
            REEQPPGTEVVR RAVD+D G NA+I+YSI+KGRD+DG+G+F+IDP SGVIRT+ VLDHE
Sbjct: 1214 REEQPPGTEVVRVRAVDRDHGQNASITYSIVKGRDSDGHGLFSIDPTSGVIRTRVVLDHE 1273

Query: 121  DRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKV 168
            +RSIYR+ VAA+D G P R+TVR+LRVEVLDLNDNRPTFTSSSL+F+V
Sbjct: 1274 ERSIYRLGVAASDGGNPPRETVRMLRVEVLDLNDNRPTFTSSSLVFRV 1321

Involved in morphogenesis. May also be involved in cell adhesion.
Drosophila melanogaster (taxid: 7227)

>sp|Q6V0I7|FAT4_HUMAN Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2

 Score =  135 bits (339), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/235 (37%), Positives = 125/235 (53%), Gaps = 17/235 (7%)

Query: 8   LDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPG 67
           LDRE  S   L   ARDQG  P+ S   + +++ DVND  P    P+   +SV E  P G
Sbjct: 540 LDRELASQIVLNISARDQGVHPKVSYAQLVVTLLDVNDEKPVFSQPEGYDVSVVENAPTG 599

Query: 68  TEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI 127
           TE++  RA D D G N T+ +S L+  +TD    F +DP+SG + T S LD E+++ Y +
Sbjct: 600 TELLMLRATDGDLGDNGTVRFS-LQEAETDRRS-FRLDPVSGRLSTISSLDREEQAFYSL 657

Query: 128 AVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFT-------------SSSLLFKVSASDPD 174
            V ATD G P + ++  + V +LD+NDN P F                S +  VSA+DPD
Sbjct: 658 LVLATDLGSPPQSSMARINVSLLDINDNSPVFYPVQYFAHIKENEPGGSYITTVSATDPD 717

Query: 175 CGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGK 229
            G N  V Y++  S    + F + + SG I     LD E +++Y+  +VATD G 
Sbjct: 718 LGTNGTVKYSI--SAGDRSRFQVNAQSGVISTRMALDREEKTAYQLQIVATDGGN 770

May function in the regulation of planar cell polarity (By similarity). Cadherins are cell-cell interaction molecules.

Homo sapiens (taxid: 9606)

>sp|Q2PZL6|FAT4_MOUSE Protocadherin Fat 4 OS=Mus musculus GN=Fat4 PE=1 SV=2

 Score =  134 bits (336), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/235 (35%), Positives = 124/235 (52%), Gaps = 17/235 (7%)

Query: 8   LDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPG 67
           LDRE  S   L   ARDQG  P+ S   + ++V DVND  P    P+   +SV E  P G
Sbjct: 540 LDRELASQIVLNISARDQGVHPKVSYAQLVVTVLDVNDEKPVFSQPEGYEVSVVENAPTG 599

Query: 68  TEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI 127
           TE++   A D+D G N T+ +S+ +  +     +F +DP+SG + T S LD E+++ Y +
Sbjct: 600 TELLVLGATDRDLGDNGTVRFSLQEAENDQ--RLFRLDPVSGRLSTASSLDREEQAFYCL 657

Query: 128 AVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFT-------------SSSLLFKVSASDPD 174
           ++ ATD G P + +   + V +LD+NDN P F                S +  VSA+DPD
Sbjct: 658 SILATDLGSPPQSSTAQVNVSLLDINDNSPVFYPVQYFAHIQENEPGGSYVTTVSATDPD 717

Query: 175 CGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGK 229
            G N  V Y++  S    + F + + SG I     LD E +++Y+  VVATD G 
Sbjct: 718 MGPNGTVKYSI--SAGDRSRFQIHAKSGVISTKMALDREEKTAYQLQVVATDGGN 770

May function in the regulation of planar cell polarity. Cadherins are cell-cell interaction molecules.

Mus musculus (taxid: 10090)

>sp|Q9NYQ7|CELR3_HUMAN Cadherin EGF LAG seven-pass G-type receptor 3 OS=Homo sapiens GN=CELSR3 PE=1 SV=2

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 125/237 (52%), Gaps = 17/237 (7%)

Query: 2    ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVR 61
            I+ + PLD E + ++ L   ARD G P ++    V++ V DVNDNAP+ V      + V 
Sbjct: 913  ITLQAPLDYEDQVTYTLAITARDNGIPQKADTTYVEVMVNDVNDNAPQFVASHYTGL-VS 971

Query: 62   EEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHED 121
            E+ PP T V++  A D+D  +N  + Y+   G D DG   FTI+P SG++RT   LD E 
Sbjct: 972  EDAPPFTSVLQISATDRDAHANGRVQYTFQNGEDGDGD--FTIEPTSGIVRTVRRLDREA 1029

Query: 122  RSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTS-------------SSLLFKV 168
             S+Y +   A D G P  +T   ++V V D+NDN P F +              S++ ++
Sbjct: 1030 VSVYELTAYAVDRGVPPLRTPVSIQVMVQDVNDNAPVFPAEEFEVRVKENSIVGSVVAQI 1089

Query: 169  SASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVAT 225
            +A DPD G NA + Y + E  +    F M   SGE+    DLD+E+R  Y   V AT
Sbjct: 1090 TAVDPDEGPNAHIMYQIVEG-NIPELFQMDIFSGELTALIDLDYEARQEYVIVVQAT 1145

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Homo sapiens (taxid: 9606)

>sp|Q9HCU4|CELR2_HUMAN Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens GN=CELSR2 PE=1 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/246 (38%), Positives = 128/246 (52%), Gaps = 27/246 (10%)

Query: 2   ISTREPLDREARSSHELVAEARDQG--SPPRSSRVAVKISVTDVNDNAPELVDPQEDVIS 59
           I TR P+DRE   S++L  EA DQG    PRS+  AV +SV D NDNAP+  + +  V+ 
Sbjct: 349 IRTRGPVDREEVESYQLTVEASDQGRDPGPRSTTAAVFLSVEDDNDNAPQFSE-KRYVVQ 407

Query: 60  VREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDH 119
           VRE+  PG  V+R  A D+D GSNA + YSI+ G   +  G F +D  +G +   S LD+
Sbjct: 408 VREDVTPGAPVLRVTASDRDKGSNAVVHYSIMSG---NARGQFYLDAQTGALDVVSPLDY 464

Query: 120 EDRSIYRIAVAATDNGFPSRQTVR-LLRVEVLDLNDNRPTFTSSS-------------LL 165
           E    Y + V A D G P    V  L+ V+VLD+NDN P F S+              L+
Sbjct: 465 ETTKEYTLRVRAQDGGRPPLSNVSGLVTVQVLDINDNAPIFVSTPFQATVLESVPLGYLV 524

Query: 166 FKVSASDPDCGVNAMVNYTLGESPSRTNH---FYMKSVSGEICISQDLDFESRSSYEFPV 222
             V A D D G NA + Y L    +   H   F + + +G I ++ +LD E    Y F V
Sbjct: 525 LHVQAIDADAGDNARLEYRL----AGVGHDFPFTINNGTGWISVAAELDREEVDFYSFGV 580

Query: 223 VATDRG 228
            A D G
Sbjct: 581 EARDHG 586

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Homo sapiens (taxid: 9606)

>sp|Q96JQ0|PCD16_HUMAN Protocadherin-16 OS=Homo sapiens GN=DCHS1 PE=2 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 121/241 (50%), Gaps = 22/241 (9%)

Query: 2    ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVR 61
            +S   PLDRE R+ H L   A D GSPPRS+   + +SV DVND AP     QE  + +R
Sbjct: 1601 LSVVRPLDREQRAEHVLTVVASDHGSPPRSATQVLTVSVADVNDEAPTFQQ-QEYSVLLR 1659

Query: 62   EEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHED 121
            E  PPGT ++  RA D D G+N  ++Y  +          F++DP +GV+ T   LD E+
Sbjct: 1660 ENNPPGTSLLTLRATDPDVGANGQVTYGGVSSES------FSLDPDTGVLTTLRALDREE 1713

Query: 122  RSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVS------------ 169
            +    + V A D G P + T   +RV V D ND+ PTF S+ L  +V             
Sbjct: 1714 QEEINLTVYAQDRGSPPQLTHVTVRVAVEDENDHAPTFGSAHLSLEVPEGQDPQTLTMLR 1773

Query: 170  ASDPDCGVNAMVNY-TLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRG 228
            ASDPD G N  + Y  L   PS    F +   SGE    + LD E   +++  + A D G
Sbjct: 1774 ASDPDVGANGQLQYRILDGDPS--GAFVLDLASGEFGTMRPLDREVEPAFQLRIEARDGG 1831

Query: 229  K 229
            +
Sbjct: 1832 Q 1832

Calcium-dependent cell-adhesion protein.

Homo sapiens (taxid: 9606)

>sp|P33450|FAT_DROME Cadherin-related tumor suppressor OS=Drosophila melanogaster GN=ft PE=1 SV=3

 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/251 (35%), Positives = 133/251 (52%), Gaps = 25/251 (9%)

Query: 1    EISTREPLDREARSSHELVAEARDQG-SPPRSSRVAVKISVTDVNDNAPELVDPQEDVIS 59
            ++S    LDRE++  H L+  A+D     P SS  ++ I V D NDNAPE      +V S
Sbjct: 1334 QLSLGRRLDRESQEIHHLIVVAKDAALKHPLSSNASITIVVLDENDNAPEFTQSSSEV-S 1392

Query: 60   VREEQPPGTEVVRARAVDKDDGSNATISYSILKG--RDTDGYGVFTIDPISGVIRTKSVL 117
            V E  P GTE++R RA D D G N+ + +SI  G  RDT     F ID I+G +     L
Sbjct: 1393 VLETSPTGTELMRFRASDADQGVNSQVVFSISAGNRRDT-----FHIDSITGSLYLHKPL 1447

Query: 118  DHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSL------------- 164
            D+ED + Y + + A+D G PS  T  L  V V+D NDN P F S+++             
Sbjct: 1448 DYEDITSYTLNITASDCGTPSLSTTVLYNVLVVDDNDNPPIFPSTAIVRQIKEGIPLKTP 1507

Query: 165  LFKVSASDPDCGVNAMVNYTLGESPSRT---NHFYMKSVSGEICISQDLDFESRSSYEFP 221
            +  V+A DPD G+N  V+Y + +   +     HF + + +G I   +++D ES  ++   
Sbjct: 1508 IVTVTADDPDSGLNGKVSYAISKQEPQLPQGRHFGINTETGVIHTLREIDRESIDTFRLT 1567

Query: 222  VVATDRGKETQ 232
            VVATDR + ++
Sbjct: 1568 VVATDRAQPSE 1578

Could function as a cell-adhesion protein. Acts as a tumor suppressor. Required for correct morphogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|Q91ZI0|CELR3_MOUSE Cadherin EGF LAG seven-pass G-type receptor 3 OS=Mus musculus GN=Celsr3 PE=2 SV=2

 Score =  130 bits (328), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 124/237 (52%), Gaps = 17/237 (7%)

Query: 2    ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVR 61
            I+ + PLD E + ++ L   ARD G P ++    V++ V DVNDNAP+ V      + V 
Sbjct: 904  ITLQAPLDYEDQVTYTLAITARDNGIPQKADTTYVEVMVNDVNDNAPQFVASHYTGL-VS 962

Query: 62   EEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHED 121
            E+ PP T V++  A D+D  +N  + Y+   G D DG   FTI+P SG++RT   LD E 
Sbjct: 963  EDAPPFTSVLQISATDRDAHANGRVQYTFQNGEDGDGD--FTIEPTSGIVRTVRRLDREA 1020

Query: 122  RSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTS-------------SSLLFKV 168
              +Y +   A D G P  +T   ++V V D+NDN P F +              S++ ++
Sbjct: 1021 VPVYELTAYAVDRGVPPLRTPVSIQVTVQDVNDNAPVFPAEEFEVRVKENSIVGSVVAQI 1080

Query: 169  SASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVAT 225
            +A DPD G NA + Y + E  +    F M   SGE+    DLD+E+R  Y   V AT
Sbjct: 1081 TAVDPDDGPNAHIMYQIVEG-NIPELFQMDIFSGELTALIDLDYEARQEYVIVVQAT 1136

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Mus musculus (taxid: 10090)

>sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor 3 OS=Rattus norvegicus GN=Celsr3 PE=2 SV=1

 Score =  130 bits (328), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 124/237 (52%), Gaps = 17/237 (7%)

Query: 2    ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVR 61
            I+ + PLD E + ++ L   ARD G P ++    V++ V DVNDNAP+ V      + V 
Sbjct: 904  ITLQAPLDYEDQVTYTLAITARDNGIPQKADTTYVEVMVNDVNDNAPQFVASHYTGL-VS 962

Query: 62   EEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHED 121
            E+ PP T V++  A D+D  +N  + Y+   G D DG   FTI+P SG++RT   LD E 
Sbjct: 963  EDAPPFTSVLQISATDRDAHANGRVQYTFQNGEDGDGD--FTIEPTSGIVRTVRRLDREA 1020

Query: 122  RSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTS-------------SSLLFKV 168
              +Y +   A D G P  +T   ++V V D+NDN P F +              S++ ++
Sbjct: 1021 VPVYELTAYAVDRGVPPLRTPVSIQVTVQDVNDNAPVFPAEEFEVRVKENSIVGSVVAQI 1080

Query: 169  SASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVAT 225
            +A DPD G NA + Y + E  +    F M   SGE+    DLD+E+R  Y   V AT
Sbjct: 1081 TAVDPDDGPNAHIMYQIVEG-NIPELFQMDIFSGELTALIDLDYEARQEYVIVVQAT 1136

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Rattus norvegicus (taxid: 10116)

>sp|Q9R0M0|CELR2_MOUSE Cadherin EGF LAG seven-pass G-type receptor 2 OS=Mus musculus GN=Celsr2 PE=1 SV=2

 Score =  127 bits (318), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 86/243 (35%), Positives = 128/243 (52%), Gaps = 17/243 (6%)

Query: 2   ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVR 61
           ++T E LDRE +S+H     A+D G P RS+   + I VTD ND+ P + + QE   S+R
Sbjct: 241 VTTAEELDRETKSTHVFRVTAQDHGMPRRSALATLTILVTDTNDHDP-VFEQQEYKESLR 299

Query: 62  EEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHED 121
           E    G EV+  RA D D   NA I Y +L+G        F IDP SGVIRT+  +D E+
Sbjct: 300 ENLEVGYEVLTVRATDGDAPPNANILYRLLEGAGDSPSDAFEIDPRSGVIRTRGPVDREE 359

Query: 122 RSIYRIAVAATDNGF--PSRQTVRLLRVEVLDLNDNRPTF-------------TSSSLLF 166
              Y++ V A+D G     R +  ++ + V D NDN P F             T  + + 
Sbjct: 360 VESYKLTVEASDQGRDPGPRSSTAIVFLSVEDDNDNAPQFSEKRYVVQVREDVTPGAPVL 419

Query: 167 KVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATD 226
           +V+ASD D G NA+V+Y++    +R   FY+ + +G + +   LD+E+   Y   + A D
Sbjct: 420 RVTASDRDKGSNALVHYSIMSGNAR-GQFYLDAQTGALDVVSPLDYETTKEYTLRIRAQD 478

Query: 227 RGK 229
            G+
Sbjct: 479 GGR 481

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
158297323	2864	AGAP007905-PA [Anopheles gambiae str. PE	0.961	0.077	0.557	2e-71
170031843	2888	cadherin [Culex quinquefasciatus] gi|167	0.961	0.077	0.549	3e-70
157108477	3131	cadherin [Aedes aegypti] gi|108884003|gb	0.961	0.071	0.553	1e-69
195437548	3471	GK24627 [Drosophila willistoni] gi|19416	0.875	0.058	0.622	2e-69
4887715	3503	adherin [Drosophila melanogaster]	0.642	0.042	0.755	3e-69
195575605	3038	GD22944 [Drosophila simulans] gi|1941896	0.646	0.049	0.751	3e-69
25090185	3503	RecName: Full=Protein dachsous; AltName:	0.642	0.042	0.755	3e-69
24580686	3556	dachsous [Drosophila melanogaster] gi|22	0.642	0.041	0.755	4e-69
194853658	3556	GG24633 [Drosophila erecta] gi|190660069	0.642	0.041	0.75	4e-69
195470324	3556	GE15963 [Drosophila yakuba] gi|194173559	0.642	0.041	0.755	5e-69

>gi|158297323|ref|XP_317578.4| AGAP007905-PA [Anopheles gambiae str. PEST] gi|157015140|gb|EAA12903.4| AGAP007905-PA [Anopheles gambiae str. PEST]

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 140/251 (55%), Positives = 181/251 (72%), Gaps = 28/251 (11%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
           EI+TR+ LDRE ++S++LV EARDQG+P RSSRV+VK+ + DVNDNAP++VDPQEDV+SV
Sbjct: 584 EITTRDSLDRETKASYDLVVEARDQGTPYRSSRVSVKVQILDVNDNAPDIVDPQEDVVSV 643

Query: 61  REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
           REEQP GTEVV+ RA+D+D G NA+ISYSILKGRD+DGYG+F+IDP+SGVIRTK+ LDHE
Sbjct: 644 REEQPIGTEVVKVRAIDRDHGQNASISYSILKGRDSDGYGMFSIDPMSGVIRTKTSLDHE 703

Query: 121 DRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSASDPDCGVNAM 180
           +++IYR+AVAATDNG P +QTVRLLR+EVLDLNDNRPTFTSSSL+F++     D GV  +
Sbjct: 704 EKTIYRLAVAATDNGKPPKQTVRLLRIEVLDLNDNRPTFTSSSLVFRLRE---DVGVGHI 760

Query: 181 VNYTLGESPSRTNHFYMKSV-------------------------SGEICISQDLDFESR 215
           +    G   S   +F   S                          SG++ +++ LD E +
Sbjct: 761 IGSISGNEQSDAENFISSSSDLHITYTLTPLTNDITEGAFDIDRNSGKLVVARQLDREQQ 820

Query: 216 SSYEFPVVATD 226
           S Y   + A D
Sbjct: 821 SEYRMEIRALD 831

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170031843|ref|XP_001843793.1| cadherin [Culex quinquefasciatus] gi|167871192|gb|EDS34575.1| cadherin [Culex quinquefasciatus]

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 138/251 (54%), Positives = 182/251 (72%), Gaps = 28/251 (11%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
           EI+TR+ LDRE +S ++LV EARDQG+P RSSR+++K+ + DVNDNAP++VDPQEDV+SV
Sbjct: 620 EITTRDSLDRETKSDYDLVVEARDQGTPYRSSRISIKVKILDVNDNAPDIVDPQEDVVSV 679

Query: 61  REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
           REEQP GTEVVR RA+D+D+G+NA+I+YSILKGRD+DGYG+F+IDPISGV+RTK  LDHE
Sbjct: 680 REEQPIGTEVVRVRAIDRDNGANASITYSILKGRDSDGYGMFSIDPISGVLRTKVSLDHE 739

Query: 121 DRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSASDPDCGVNAM 180
           +++IYR+AVAATDNG P RQTVR+LR+EVLDLNDNRPTFTSSSL+F++     D GV  +
Sbjct: 740 EKTIYRLAVAATDNGKPPRQTVRVLRIEVLDLNDNRPTFTSSSLVFRLRE---DVGVGHV 796

Query: 181 VNYTLGESPS-------RTNHFYMKSV------------------SGEICISQDLDFESR 215
           +    G   S        TN  ++                     SG++ +++ LD E +
Sbjct: 797 IGSISGSEQSDLDNLITATNDLHITYTLTPLTNDITEGAFDIDRNSGKLVVARSLDREQQ 856

Query: 216 SSYEFPVVATD 226
           S Y   + A D
Sbjct: 857 SEYRMEIRALD 867

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157108477|ref|XP_001650243.1| cadherin [Aedes aegypti] gi|108884003|gb|EAT48228.1| AAEL000700-PA [Aedes aegypti]

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 139/251 (55%), Positives = 179/251 (71%), Gaps = 28/251 (11%)

Query: 1    EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
            EI+TR+ LDRE +S ++LV EARDQG+P RSSRV++KI + DVNDN+PE+VDPQEDV+SV
Sbjct: 840  EITTRDRLDRETKSIYDLVVEARDQGTPYRSSRVSIKIKILDVNDNSPEIVDPQEDVVSV 899

Query: 61   REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
            REEQP GTEVVR RA+D+D G NA+I+YSILKGRD+DG+G+FTIDPI+G+IRTK+ LDHE
Sbjct: 900  REEQPIGTEVVRVRAIDRDYGVNASITYSILKGRDSDGHGMFTIDPITGLIRTKASLDHE 959

Query: 121  DRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSASDPDCGVNAM 180
            +++IYR+AVAATDNG P RQTVRLLR+EVLDLNDNRPTFTSSSL+F++     D GV  +
Sbjct: 960  EKTIYRLAVAATDNGKPPRQTVRLLRIEVLDLNDNRPTFTSSSLVFRLRE---DVGVGHV 1016

Query: 181  VNYTLGESPSRTNHFYMKS-------------------------VSGEICISQDLDFESR 215
            +    G   S   +    S                          SG++ +++ LD E +
Sbjct: 1017 IGSISGNEQSDLENLITSSNDLHITYTLTPLTNDIAEGAFDIDRNSGKLVVARSLDREQQ 1076

Query: 216  SSYEFPVVATD 226
            S Y   + A D
Sbjct: 1077 SEYRMEIRALD 1087

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195437548|ref|XP_002066702.1| GK24627 [Drosophila willistoni] gi|194162787|gb|EDW77688.1| GK24627 [Drosophila willistoni]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 132/212 (62%), Positives = 173/212 (81%), Gaps = 9/212 (4%)

Query: 1    EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
            EI+T+EPLDRE R  ++L+ EARDQGSP RS+RV V+I VTDVNDNAPE+ DPQEDV+SV
Sbjct: 1175 EITTKEPLDREQRELYDLLVEARDQGSPQRSARVPVRIHVTDVNDNAPEIADPQEDVVSV 1234

Query: 61   REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
            REEQPPGTEVVR RA+D+D G NA+I+YSI+KGRD+DG+G+F+IDP +GVIRT++VLDHE
Sbjct: 1235 REEQPPGTEVVRIRAIDRDSGQNASITYSIVKGRDSDGHGLFSIDPQTGVIRTRTVLDHE 1294

Query: 121  DRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSASDPDCGVNAM 180
            +RSIYR+ VAATD G P ++T+R+LRVEVLDLNDNRPTFTSSSL+F+V         +A 
Sbjct: 1295 ERSIYRLGVAATDGGQPPKETLRMLRVEVLDLNDNRPTFTSSSLVFRVRE-------DAS 1347

Query: 181  VNYTLGE-SPSRTNHFYMKSVSGEICISQDLD 211
            V + +G  SPS T++  + +   ++C++  L+
Sbjct: 1348 VGHVVGSISPSETSN-SLDAPDDQLCVTYSLN 1378

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|4887715|gb|AAA79329.2| adherin [Drosophila melanogaster]

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 151/168 (89%)

Query: 1    EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
            EISTREPLDRE R  ++LV EARDQG+P RS+RV V+I V+DVNDNAPE+ DPQEDV+SV
Sbjct: 1154 EISTREPLDRELRELYDLVVEARDQGTPVRSARVPVRIHVSDVNDNAPEIADPQEDVVSV 1213

Query: 61   REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
            REEQPPGTEVVR RAVD+D G NA+I+YSI+KGRD+DG+G+F+IDP SGVIRT+ VLDHE
Sbjct: 1214 REEQPPGTEVVRVRAVDRDHGQNASITYSIVKGRDSDGHGLFSIDPTSGVIRTRVVLDHE 1273

Query: 121  DRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKV 168
            +RSIYR+ VAA+D G P R+TVR+LRVEVLDLNDNRPTFTSSSL+F+V
Sbjct: 1274 ERSIYRLGVAASDGGNPPRETVRMLRVEVLDLNDNRPTFTSSSLVFRV 1321

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195575605|ref|XP_002077668.1| GD22944 [Drosophila simulans] gi|194189677|gb|EDX03253.1| GD22944 [Drosophila simulans]

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/169 (75%), Positives = 151/169 (89%)

Query: 1    EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
            EISTREPLDRE R  ++LV EARDQG+P RS+RV V+I V+DVNDNAPE+ DPQEDV+SV
Sbjct: 1207 EISTREPLDRELRELYDLVVEARDQGTPVRSARVPVRIHVSDVNDNAPEIADPQEDVVSV 1266

Query: 61   REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
            REEQPPGTEVVR RAVD+D G NA+I+YSI+KGRD+DG+G+F+IDP SGVIRT+ VLDHE
Sbjct: 1267 REEQPPGTEVVRVRAVDRDHGQNASITYSIVKGRDSDGHGLFSIDPTSGVIRTRVVLDHE 1326

Query: 121  DRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVS 169
            +RSIYR+ VAA+D G P R+TVR+LRVEVLDLNDNRPTFTSSSL+F+ S
Sbjct: 1327 ERSIYRLGVAASDGGSPPRETVRMLRVEVLDLNDNRPTFTSSSLVFRCS 1375

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|25090185|sp|Q24292.3|DS_DROME RecName: Full=Protein dachsous; AltName: Full=Adherin; Flags: Precursor

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 151/168 (89%)

Query: 1    EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
            EISTREPLDRE R  ++LV EARDQG+P RS+RV V+I V+DVNDNAPE+ DPQEDV+SV
Sbjct: 1154 EISTREPLDRELRELYDLVVEARDQGTPVRSARVPVRIHVSDVNDNAPEIADPQEDVVSV 1213

Query: 61   REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
            REEQPPGTEVVR RAVD+D G NA+I+YSI+KGRD+DG+G+F+IDP SGVIRT+ VLDHE
Sbjct: 1214 REEQPPGTEVVRVRAVDRDHGQNASITYSIVKGRDSDGHGLFSIDPTSGVIRTRVVLDHE 1273

Query: 121  DRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKV 168
            +RSIYR+ VAA+D G P R+TVR+LRVEVLDLNDNRPTFTSSSL+F+V
Sbjct: 1274 ERSIYRLGVAASDGGNPPRETVRMLRVEVLDLNDNRPTFTSSSLVFRV 1321

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24580686|ref|NP_523446.2| dachsous [Drosophila melanogaster] gi|22945533|gb|AAF51468.3| dachsous [Drosophila melanogaster]

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 151/168 (89%)

Query: 1    EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
            EISTREPLDRE R  ++LV EARDQG+P RS+RV V+I V+DVNDNAPE+ DPQEDV+SV
Sbjct: 1207 EISTREPLDRELRELYDLVVEARDQGTPVRSARVPVRIHVSDVNDNAPEIADPQEDVVSV 1266

Query: 61   REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
            REEQPPGTEVVR RAVD+D G NA+I+YSI+KGRD+DG+G+F+IDP SGVIRT+ VLDHE
Sbjct: 1267 REEQPPGTEVVRVRAVDRDHGQNASITYSIVKGRDSDGHGLFSIDPTSGVIRTRVVLDHE 1326

Query: 121  DRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKV 168
            +RSIYR+ VAA+D G P R+TVR+LRVEVLDLNDNRPTFTSSSL+F+V
Sbjct: 1327 ERSIYRLGVAASDGGNPPRETVRMLRVEVLDLNDNRPTFTSSSLVFRV 1374

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194853658|ref|XP_001968202.1| GG24633 [Drosophila erecta] gi|190660069|gb|EDV57261.1| GG24633 [Drosophila erecta]

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 152/168 (90%)

Query: 1    EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
            EISTREPLDRE R  ++LV EARDQG+P RS+RV V+I V+DVNDNAPE+ DPQEDV+SV
Sbjct: 1207 EISTREPLDRELRELYDLVVEARDQGTPVRSARVPVRIHVSDVNDNAPEIADPQEDVVSV 1266

Query: 61   REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
            REEQPPGTEVVR RAVD+D+G NA+I+YSI+KGRD+DG+G+F+IDP SGVIRT+ VLDHE
Sbjct: 1267 REEQPPGTEVVRVRAVDRDNGQNASITYSIVKGRDSDGHGLFSIDPSSGVIRTRVVLDHE 1326

Query: 121  DRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKV 168
            +RSIYR+ VAA+D G P R+T+R+LRVEVLDLNDNRPTFTSSSL+F+V
Sbjct: 1327 ERSIYRLGVAASDGGSPPRETIRMLRVEVLDLNDNRPTFTSSSLVFRV 1374

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195470324|ref|XP_002087458.1| GE15963 [Drosophila yakuba] gi|194173559|gb|EDW87170.1| GE15963 [Drosophila yakuba]

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 151/168 (89%)

Query: 1    EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
            EISTREPLDRE R  ++LV EARDQG+P RS+RV V+I V+DVNDNAPE+ DPQEDV+SV
Sbjct: 1207 EISTREPLDRELRELYDLVVEARDQGTPVRSARVPVRIHVSDVNDNAPEIADPQEDVVSV 1266

Query: 61   REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
            REEQPPGTEVVR RAVD+D G NA+I+YSI+KGRD+DG+G+F+IDP SGVIRT+ VLDHE
Sbjct: 1267 REEQPPGTEVVRVRAVDRDHGQNASITYSIVKGRDSDGHGLFSIDPSSGVIRTRVVLDHE 1326

Query: 121  DRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKV 168
            +RSIYR+ VAA+D G P R+TVR+LRVEVLDLNDNRPTFTSSSL+F+V
Sbjct: 1327 ERSIYRLGVAASDGGSPPRETVRMLRVEVLDLNDNRPTFTSSSLVFRV 1374

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
FB|FBgn0000497	3503	ds "dachsous" [Drosophila mela	0.724	0.047	0.755	2.4e-67
ZFIN|ZDB-GENE-070122-3	2916	celsr3 "cadherin, EGF LAG seve	0.948	0.075	0.358	6.2e-31
UNIPROTKB|G3V8P3	2919	Celsr2 "Cadherin EGF LAG seven	0.956	0.076	0.386	2.1e-30
UNIPROTKB|Q6V0I7	4981	FAT4 "Protocadherin Fat 4" [Ho	0.935	0.043	0.371	3.1e-30
RGD|1309878	3278	Dchs1 "dachsous 1 (Drosophila)	0.943	0.066	0.373	3.1e-30
UNIPROTKB|F1M9W4	807	Pcdhgb7 "Protein Pcdhgb7" [Rat	0.931	0.267	0.412	3.4e-30
UNIPROTKB|Q9HCU4	2923	CELSR2 "Cadherin EGF LAG seven	0.956	0.075	0.390	3.5e-30
UNIPROTKB|E2R4F0	2926	CELSR2 "Uncharacterized protei	0.956	0.075	0.390	4.4e-30
RGD|1588516	931	Pcdhgb7 "protocadherin gamma s	0.931	0.232	0.412	4.6e-30
UNIPROTKB|E2RR85	4982	FAT4 "Uncharacterized protein"	0.935	0.043	0.363	6.4e-30

FB|FBgn0000497 ds "dachsous" [Drosophila melanogaster (taxid:7227)]

 Score = 668 (240.2 bits), Expect = 2.4e-67, Sum P(2) = 2.4e-67
 Identities = 127/168 (75%), Positives = 151/168 (89%)

Query:     1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
             EISTREPLDRE R  ++LV EARDQG+P RS+RV V+I V+DVNDNAPE+ DPQEDV+SV
Sbjct:  1154 EISTREPLDRELRELYDLVVEARDQGTPVRSARVPVRIHVSDVNDNAPEIADPQEDVVSV 1213

Query:    61 REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
             REEQPPGTEVVR RAVD+D G NA+I+YSI+KGRD+DG+G+F+IDP SGVIRT+ VLDHE
Sbjct:  1214 REEQPPGTEVVRVRAVDRDHGQNASITYSIVKGRDSDGHGLFSIDPTSGVIRTRVVLDHE 1273

Query:   121 DRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKV 168
             +RSIYR+ VAA+D G P R+TVR+LRVEVLDLNDNRPTFTSSSL+F+V
Sbjct:  1274 ERSIYRLGVAASDGGNPPRETVRMLRVEVLDLNDNRPTFTSSSLVFRV 1321

GO:0000904 "cell morphogenesis involved in differentiation" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0005886 "plasma membrane" evidence=ISS

GO:0018149 "peptide cross-linking" evidence=IPI

GO:0016021 "integral to membrane" evidence=TAS

GO:0004872 "receptor activity" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IEA;ISS

GO:0050839 "cell adhesion molecule binding" evidence=ISS;IDA

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0004871 "signal transducer activity" evidence=NAS

GO:0042067 "establishment of ommatidial planar polarity" evidence=IMP;TAS

GO:0016318 "ommatidial rotation" evidence=TAS

GO:0001737 "establishment of imaginal disc-derived wing hair orientation" evidence=IMP;TAS

GO:0045317 "equator specification" evidence=IMP

GO:0045198 "establishment of epithelial cell apical/basal polarity" evidence=IMP

GO:0007164 "establishment of tissue polarity" evidence=NAS

GO:0001736 "establishment of planar polarity" evidence=IGI;IMP;TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0035222 "wing disc pattern formation" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0048592 "eye morphogenesis" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

GO:0090176 "microtubule cytoskeleton organization involved in establishment of planar polarity" evidence=IMP

GO:0090175 "regulation of establishment of planar polarity" evidence=IGI

ZFIN|ZDB-GENE-070122-3 celsr3 "cadherin, EGF LAG seven-pass G-type receptor 3" [Danio rerio (taxid:7955)]

 Score = 358 (131.1 bits), Expect = 6.2e-31, P = 6.2e-31
 Identities = 85/237 (35%), Positives = 128/237 (54%)

Query:     2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVR 61
             I+ +  LD E + ++ L   ARD G P +S    V+++V DVNDNAP+ + P+     V 
Sbjct:   598 ITLQAELDYEDQMTYTLAITARDNGIPQKSDTTYVEVNVNDVNDNAPQFLSPRYQG-GVS 656

Query:    62 EEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHED 121
             E+ PP T V++  A D+D  +N  + Y+   G D DG   FTI+P SG++RT   LD E 
Sbjct:   657 EDAPPFTSVLQISATDRDAHANGRVQYTFQNGEDGDGD--FTIEPTSGIVRTVRRLDRES 714

Query:   122 RSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS-------------SLLFKV 168
                Y +   A D G P ++T   ++V V+D+NDN P F +              S++ ++
Sbjct:   715 VPFYELTAFAVDRGVPPQRTPVHIQVSVMDVNDNAPVFPADDFEVLVKENSAVGSVVAQI 774

Query:   169 SASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVAT 225
             +A+DPD G NA + Y + E  +    F M   SGE+    DLD+E+R+ Y   V AT
Sbjct:   775 TATDPDEGPNAQIMYQIVEG-NIPEIFQMDIFSGELTSLIDLDYETRNEYVIVVQAT 830

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007166 "cell surface receptor signaling pathway" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IMP

UNIPROTKB|G3V8P3 Celsr2 "Cadherin EGF LAG seven-pass G-type receptor 2" [Rattus norvegicus (taxid:10116)]

 Score = 353 (129.3 bits), Expect = 2.1e-30, P = 2.1e-30
 Identities = 94/243 (38%), Positives = 128/243 (52%)

Query:     2 ISTREPLDREARSSHELVAEARDQG-SP-PRSSRVAVKISVTDVNDNAPELVDPQEDVIS 59
             I TR P+DRE   S++L+ EA DQG  P PRSS   V +SV D NDNAP+  + +  V+ 
Sbjct:   349 IRTRGPVDREEVESYKLIVEASDQGRDPGPRSSTAVVFLSVEDDNDNAPQFSEKRY-VVQ 407

Query:    60 VREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDH 119
             VRE+  PG  V+R  A D+D GSNA + YSI+ G   +  G F +D  +G +   S LD+
Sbjct:   408 VREDVTPGAPVLRVTASDRDKGSNALVHYSIMSG---NARGQFYLDAQTGALDVVSPLDY 464

Query:   120 EDRSIYRIAVAATDNGFPSRQTVR-LLRVEVLDLNDNRPTFTSSS-------------LL 165
             E    Y + + A D G P    V  L+ V+VLD+NDN P F S+              L+
Sbjct:   465 ETTKEYTLRIRAQDGGRPPLSNVSGLVTVQVLDINDNAPIFVSTPFQATVLESVPLGYLV 524

Query:   166 FKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVAT 225
               V A D D G NA + Y+L         F + + +G I ++ +LD E    Y F V A 
Sbjct:   525 LHVQAIDADAGENARLEYSLA-GVGHDFPFTINNGTGWISVAAELDREEVDFYSFGVEAR 583

Query:   226 DRG 228
             D G
Sbjct:   584 DHG 586

GO:0001764 "neuron migration" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0021591 "ventricular system development" evidence=IEA

UNIPROTKB|Q6V0I7 FAT4 "Protocadherin Fat 4" [Homo sapiens (taxid:9606)]

 Score = 354 (129.7 bits), Expect = 3.1e-30, P = 3.1e-30
 Identities = 87/234 (37%), Positives = 125/234 (53%)

Query:     8 LDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPG 67
             LDRE  S   L   ARDQG  P+ S   + +++ DVND  P    P+   +SV E  P G
Sbjct:   540 LDRELASQIVLNISARDQGVHPKVSYAQLVVTLLDVNDEKPVFSQPEGYDVSVVENAPTG 599

Query:    68 TEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI 127
             TE++  RA D D G N T+ +S L+  +TD    F +DP+SG + T S LD E+++ Y +
Sbjct:   600 TELLMLRATDGDLGDNGTVRFS-LQEAETDRRS-FRLDPVSGRLSTISSLDREEQAFYSL 657

Query:   128 AVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF-------------TSSSLLFKVSASDPD 174
              V ATD G P + ++  + V +LD+NDN P F                S +  VSA+DPD
Sbjct:   658 LVLATDLGSPPQSSMARINVSLLDINDNSPVFYPVQYFAHIKENEPGGSYITTVSATDPD 717

Query:   175 CGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRG 228
              G N  V Y++  S    + F + + SG I     LD E +++Y+  +VATD G
Sbjct:   718 LGTNGTVKYSI--SAGDRSRFQVNAQSGVISTRMALDREEKTAYQLQIVATDGG 769

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

RGD|1309878 Dchs1 "dachsous 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 352 (129.0 bits), Expect = 3.1e-30, P = 3.1e-30
 Identities = 90/241 (37%), Positives = 125/241 (51%)

Query:     2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVR 61
             +S   PLDRE R+ H L   A D GSPPRSS   + +SV DVND AP     + +VI +R
Sbjct:  1581 LSVVRPLDREQRAEHVLTVVASDHGSPPRSSTQLLTVSVVDVNDEAPAFPQQEYNVI-LR 1639

Query:    62 EEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHED 121
             E  PPGT ++  +A D D G+N  ++Y  + G        F++DP SGV+ T   LD E+
Sbjct:  1640 ENSPPGTSLLTLKATDPDLGANGQVTYGGVSGES------FSLDPNSGVLTTLRALDREE 1693

Query:   122 RSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVS------------ 169
             +    + V A D G P   T   +RV V D ND+ PTF ++ L  +V             
Sbjct:  1694 QEEINLTVYARDRGLPPLLTHITVRVTVEDENDHSPTFGNTHLSLEVPEGQDPQTLTTLR 1753

Query:   170 ASDPDCGVNAMVNYT-LGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRG 228
             ASDPD G+N  + Y  LG  PS    F +   SGE   ++ LD E   +++  + A D G
Sbjct:  1754 ASDPDGGLNGQLQYRILGGDPSGA--FALDLTSGEFGTTRPLDREVEPAFQLQIEARDGG 1811

Query:   229 K 229
             +
Sbjct:  1812 Q 1812

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1M9W4 Pcdhgb7 "Protein Pcdhgb7" [Rattus norvegicus (taxid:10116)]

 Score = 343 (125.8 bits), Expect = 3.4e-30, P = 3.4e-30
 Identities = 103/250 (41%), Positives = 132/250 (52%)

Query:     1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDV-IS 59
             E+  ++ LDRE  S+H LV  A D G PPRS    ++I V D NDN P  V  QE   + 
Sbjct:   193 ELELQKMLDRETESTHNLVLTAVDGGDPPRSGTAQLRIRVMDANDNPP--VFSQEVYRVR 250

Query:    60 VREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDH 119
             VRE+ PPGT V+R RA D+D+G NA  +YS L G        F++DP++G I T   LD 
Sbjct:   251 VREDLPPGTTVLRLRATDQDEGINAEFTYSFL-GVANKAQHEFSLDPVTGDIITLQSLDF 309

Query:   120 EDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSL--------------- 164
             E+   Y I V A D G  S Q  +++ +EVLD NDNRP    +SL               
Sbjct:   310 EEVEQYTIDVEAKDRGSLSSQC-KVI-IEVLDENDNRPEIIITSLSDQILEDSPSGTVVA 367

Query:   165 LFKVSASDPDCGVNAMVNYTL-GESP----SRTNHFYMKSVSGEICISQDLDFESRSSYE 219
             LFKV   D D G NA V  +L G +P    S +N++Y K V+  I     LD E    Y 
Sbjct:   368 LFKVR--DRDSGENAEVTCSLSGNNPFKIHSSSNNYY-KLVTDSI-----LDREQTPGYN 419

Query:   220 FPVVATDRGK 229
               + ATDRGK
Sbjct:   420 VTITATDRGK 429

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9HCU4 CELSR2 "Cadherin EGF LAG seven-pass G-type receptor 2" [Homo sapiens (taxid:9606)]

 Score = 351 (128.6 bits), Expect = 3.5e-30, P = 3.5e-30
 Identities = 95/243 (39%), Positives = 127/243 (52%)

Query:     2 ISTREPLDREARSSHELVAEARDQG-SP-PRSSRVAVKISVTDVNDNAPELVDPQEDVIS 59
             I TR P+DRE   S++L  EA DQG  P PRS+  AV +SV D NDNAP+  + +  V+ 
Sbjct:   349 IRTRGPVDREEVESYQLTVEASDQGRDPGPRSTTAAVFLSVEDDNDNAPQFSEKRY-VVQ 407

Query:    60 VREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDH 119
             VRE+  PG  V+R  A D+D GSNA + YSI+ G   +  G F +D  +G +   S LD+
Sbjct:   408 VREDVTPGAPVLRVTASDRDKGSNAVVHYSIMSG---NARGQFYLDAQTGALDVVSPLDY 464

Query:   120 EDRSIYRIAVAATDNGFPSRQTVR-LLRVEVLDLNDNRPTFTSSS-------------LL 165
             E    Y + V A D G P    V  L+ V+VLD+NDN P F S+              L+
Sbjct:   465 ETTKEYTLRVRAQDGGRPPLSNVSGLVTVQVLDINDNAPIFVSTPFQATVLESVPLGYLV 524

Query:   166 FKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVAT 225
               V A D D G NA + Y L         F + + +G I ++ +LD E    Y F V A 
Sbjct:   525 LHVQAIDADAGDNARLEYRLA-GVGHDFPFTINNGTGWISVAAELDREEVDFYSFGVEAR 583

Query:   226 DRG 228
             D G
Sbjct:   584 DHG 586

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0021591 "ventricular system development" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=NAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=NAS

GO:0021999 "neural plate anterior/posterior regionalization" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0022407 "regulation of cell-cell adhesion" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=ISS

GO:0016055 "Wnt receptor signaling pathway" evidence=ISS

GO:0048813 "dendrite morphogenesis" evidence=ISS

UNIPROTKB|E2R4F0 CELSR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 350 (128.3 bits), Expect = 4.4e-30, P = 4.4e-30
 Identities = 95/243 (39%), Positives = 127/243 (52%)

Query:     2 ISTREPLDREARSSHELVAEARDQG-SP-PRSSRVAVKISVTDVNDNAPELVDPQEDVIS 59
             I TR P+DRE   S++L  EA DQG  P PRS+  AV +SV D NDNAP+  + +  V+ 
Sbjct:   352 IRTRGPVDREEVESYQLTVEASDQGRDPGPRSATAAVFLSVEDDNDNAPQFSEKRY-VVQ 410

Query:    60 VREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDH 119
             VRE+  PG  V+R  A D+D GSNA + YSI+ G   +  G F +D  +G +   S LD+
Sbjct:   411 VREDVTPGAPVLRVTASDRDKGSNALVHYSIMSG---NARGQFYLDAQTGALDVVSPLDY 467

Query:   120 EDRSIYRIAVAATDNGFPSRQTVR-LLRVEVLDLNDNRPTFTSSS-------------LL 165
             E    Y + V A D G P    V  L+ V+VLD+NDN P F S+              L+
Sbjct:   468 ETTKEYTLRVRAQDGGRPPLSNVSGLVTVQVLDINDNAPIFVSTPFQATVLESVPLGYLV 527

Query:   166 FKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVAT 225
               V A D D G NA + Y L         F + + +G I ++ +LD E    Y F V A 
Sbjct:   528 LHVQAIDADAGDNARLEYRLA-GVGHDFPFAINNGTGWISVAAELDREEVDFYSFGVEAR 586

Query:   226 DRG 228
             D G
Sbjct:   587 DHG 589

GO:0021591 "ventricular system development" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

RGD|1588516 Pcdhgb7 "protocadherin gamma subfamily B, 7" [Rattus norvegicus (taxid:10116)]

 Score = 343 (125.8 bits), Expect = 4.6e-30, P = 4.6e-30
 Identities = 103/250 (41%), Positives = 132/250 (52%)

Query:     1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDV-IS 59
             E+  ++ LDRE  S+H LV  A D G PPRS    ++I V D NDN P  V  QE   + 
Sbjct:   193 ELELQKMLDRETESTHNLVLTAVDGGDPPRSGTAQLRIRVMDANDNPP--VFSQEVYRVR 250

Query:    60 VREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDH 119
             VRE+ PPGT V+R RA D+D+G NA  +YS L G        F++DP++G I T   LD 
Sbjct:   251 VREDLPPGTTVLRLRATDQDEGINAEFTYSFL-GVANKAQHEFSLDPVTGDIITLQSLDF 309

Query:   120 EDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSL--------------- 164
             E+   Y I V A D G  S Q  +++ +EVLD NDNRP    +SL               
Sbjct:   310 EEVEQYTIDVEAKDRGSLSSQC-KVI-IEVLDENDNRPEIIITSLSDQILEDSPSGTVVA 367

Query:   165 LFKVSASDPDCGVNAMVNYTL-GESP----SRTNHFYMKSVSGEICISQDLDFESRSSYE 219
             LFKV   D D G NA V  +L G +P    S +N++Y K V+  I     LD E    Y 
Sbjct:   368 LFKVR--DRDSGENAEVTCSLSGNNPFKIHSSSNNYY-KLVTDSI-----LDREQTPGYN 419

Query:   220 FPVVATDRGK 229
               + ATDRGK
Sbjct:   420 VTITATDRGK 429

GO:0016020 "membrane" evidence=ISO

UNIPROTKB|E2RR85 FAT4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 351 (128.6 bits), Expect = 6.4e-30, P = 6.4e-30
 Identities = 85/234 (36%), Positives = 126/234 (53%)

Query:     8 LDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPG 67
             LDRE  S   L   ARDQG  P+ S   + +++ DVND  P    P+   +SV E  P G
Sbjct:   540 LDRELASQIVLNISARDQGVHPKFSYAQLVVTLLDVNDEKPAFSQPEGYAVSVVENAPTG 599

Query:    68 TEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI 127
             TE++   A D+D G N T+ +S L+  +TD    F +DP+SG + T + LD E+++ Y +
Sbjct:   600 TELLVLGATDRDLGDNGTVRFS-LQEAETDQRS-FRLDPVSGRLSTVASLDREEQAFYSL 657

Query:   128 AVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF-------------TSSSLLFKVSASDPD 174
              V ATD G P + ++  + V +LD+NDN P F                S +  VSA+DPD
Sbjct:   658 LVLATDLGSPPQSSMARINVSLLDVNDNSPVFYPVQYFAHIQENEPGGSYITTVSATDPD 717

Query:   175 CGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRG 228
              G+N  V Y++  S    + F + + SG I     LD E +++Y+  +VATD G
Sbjct:   718 LGLNGTVRYSI--SAGDRSRFQVNAQSGVISTRMALDREEKTAYQLQIVATDGG 769

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q24292	DS_DROME	No assigned EC number	0.7559	0.6422	0.0425	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	232
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	3e-28
pfam00028	92	pfam00028, Cadherin, Cadherin domain	4e-23
smart00112	81	smart00112, CA, Cadherin repeats	1e-22
smart00112	81	smart00112, CA, Cadherin repeats	2e-14
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	7e-14
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	2e-13
smart00112	81	smart00112, CA, Cadherin repeats	9e-11
pfam00028	92	pfam00028, Cadherin, Cadherin domain	1e-08
pfam00028	92	pfam00028, Cadherin, Cadherin domain	2e-08
cd00031	98	cd00031, CA_like, Cadherin repeat-like domain	1e-04

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score =  102 bits (256), Expect = 3e-28
 Identities = 42/99 (42%), Positives = 58/99 (58%), Gaps = 3/99 (3%)

Query: 57  VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
            +SV E  PPGT V+   A D D G N  ++YSI+ G   +  G+F+IDP +G I T   
Sbjct: 3   EVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSG---NEDGLFSIDPSTGEITTAKP 59

Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDN 155
           LD E++S Y + V ATD G P   +   + + VLD+NDN
Sbjct: 60  LDREEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 88.9 bits (221), Expect = 4e-23
 Identities = 38/94 (40%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 57  VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
             SV E  P GTEV+   A D D G N  I YSIL G      G F IDP +G + T   
Sbjct: 2   SASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGG---GPGGWFRIDPDTGDLSTTKP 58

Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVL 150
           LD E    Y + V ATD+G P   +   + + VL
Sbjct: 59  LDRESIGEYELTVLATDSGGPPLSSTTTVTITVL 92

Length = 92

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 87.4 bits (217), Expect = 1e-22
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 74  RAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD 133
            A D D G N  ++YSIL G   +  G+F+IDP +G I T   LD E++  Y + V ATD
Sbjct: 1   SATDADSGENGKVTYSILSG---NDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATD 57

Query: 134 NGFPSRQTVRLLRVEVLDLNDNRP 157
            G P   +   + + VLD+NDN P
Sbjct: 58  GGGPPLSSTATVTITVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 65.8 bits (161), Expect = 2e-14
 Identities = 27/48 (56%), Positives = 32/48 (66%)

Query: 1  EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAP 48
          EI+T +PLDRE +  + L  EA D G PP SS   V I+V DVNDNAP
Sbjct: 34 EITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTITVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 65.0 bits (159), Expect = 7e-14
 Identities = 26/46 (56%), Positives = 31/46 (67%)

Query: 1  EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDN 46
          EI+T +PLDRE +SS+ L   A D G PP SS   V I+V DVNDN
Sbjct: 53 EITTAKPLDREEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 63.9 bits (156), Expect = 2e-13
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 163 SLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPV 222
           +++  VSA+DPD G N  V Y++  S +    F +   +GEI  ++ LD E +SSY   V
Sbjct: 14  TVVLTVSATDPDSGENGEVTYSI-VSGNEDGLFSIDPSTGEITTAKPLDREEQSSYTLTV 72

Query: 223 VATDRG 228
            ATD G
Sbjct: 73  TATDGG 78

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 56.2 bits (136), Expect = 9e-11
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 169 SASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRG 228
           SA+D D G N  V Y++  S +    F +   +GEI  ++ LD E +  Y   V ATD G
Sbjct: 1   SATDADSGENGKVTYSI-LSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGG 59

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 163 SLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPV 222
           + +  V+A+D D G N  + Y++         F +   +G++  ++ LD ES   YE  V
Sbjct: 13  TEVLTVTATDADLGPNGRIFYSILGGGPG-GWFRIDPDTGDLSTTKPLDRESIGEYELTV 71

Query: 223 VATDRG 228
           +ATD G
Sbjct: 72  LATDSG 77

Length = 92

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 1  EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVT 41
          ++ST +PLDRE+   +EL   A D G PP SS   V I+V 
Sbjct: 52 DLSTTKPLDRESIGEYELTVLATDSGGPPLSSTTTVTITVL 92

Length = 92

>gnl|CDD|206635 cd00031, CA_like, Cadherin repeat-like domain

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 3/98 (3%)

Query: 58  ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVL 117
            S  E +  G+  V    +  D  +++     I              +P SG++     L
Sbjct: 4   GSAVEGRSRGSFRVS---IPTDLIASSGEIIKISAAGKEALPSWLHWEPHSGILEGLEKL 60

Query: 118 DHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDN 155
           D ED+ ++ I+V+A   G    QT  +  +EV D NDN
Sbjct: 61  DREDKGVHYISVSAASLGANVPQTSSVFSIEVYDENDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. This family also includes the cadherin-like repeats of extracellular alpha-dystroglycan. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
KOG4289|consensus	2531		100.0
KOG4289|consensus	2531		100.0
KOG1219|consensus	4289		100.0
KOG1219|consensus	4289		100.0
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	100.0
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	99.95
KOG1834|consensus	952		99.84
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.83
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.76
KOG1834|consensus	952		99.74
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.36
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.21
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	97.96
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	97.36
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	97.24
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	96.62
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	96.09
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	94.89
PF13750	158	Big_3_3: Bacterial Ig-like domain (group 3)	92.89
PF05345	49	He_PIG: Putative Ig domain; InterPro: IPR008009 Th	92.26
TIGR00845	928	caca sodium/calcium exchanger 1. This model is spe	91.62
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	89.5
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	88.19
TIGR03660	137	T1SS_rpt_143 T1SS-143 repeat domain. This model re	87.05
PF05345	49	He_PIG: Putative Ig domain; InterPro: IPR008009 Th	85.28
PF13750	158	Big_3_3: Bacterial Ig-like domain (group 3)	84.45

>KOG4289|consensus

Probab=100.00  E-value=9.6e-45  Score=321.18  Aligned_cols=225  Identities=36%  Similarity=0.615  Sum_probs=214.7

Q ss_pred             CeEecCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCC
Q psy8618           1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDD   80 (232)
Q Consensus         1 ~i~~~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~   80 (232)
                      .|++++.||||.++.+.|.|.|.|.+.|+++++++|+|.|.|+|||.|+|.+. .|.-++.|+.+.|+.|.++.|+|.|+
T Consensus       220 ~irta~~lDREt~e~HvlrVtA~d~~~P~~SAtttv~V~V~D~nDhsPvFEq~-~Y~e~lREn~evGy~vLtvrAtD~Ds  298 (2531)
T KOG4289|consen  220 AIRTAKSLDRETKETHVLRVTAQDHGDPRRSATTTVTVLVLDTNDHSPVFEQD-EYREELRENLEVGYEVLTVRATDGDS  298 (2531)
T ss_pred             cchhhhhhhhhhhheeEEEEEeeecCCCcccceeEEEEEEeecCCCCcccchh-HHHHHHhhccccCceEEEEEeccCCC
Confidence            36789999999999999999999999999999999999999999999999998 78899999999999999999999999


Q ss_pred             CCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeCCCCCcceeEEEEEEEEecCCCCCeee
Q psy8618          81 GSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFT  160 (232)
Q Consensus        81 ~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d~Nd~~P~f~  160 (232)
                      ++|+.++|+++.|   +....|.|++.+|.|++..+||||....|++.|.|.|.|.++...++.|.|+|.|.|||+|+|.
T Consensus       299 p~Nani~Yrl~eg---~~~~~f~in~rSGvI~T~a~lDRE~~~~y~L~VeAsDqG~~pgp~Ta~V~itV~D~NDNaPqFs  375 (2531)
T KOG4289|consen  299 PPNANIRYRLLEG---NAKNVFEINPRSGVISTRAPLDREELESYQLDVEASDQGRPPGPRTAMVEITVEDENDNAPQFS  375 (2531)
T ss_pred             CCCCceEEEecCC---CccceeEEcCccceeeccCccCHHhhhheEEEEEeccCCCCCCCceEEEEEEEEecCCCCcccc
Confidence            9999999999988   6788999999999999999999999999999999999999988889999999999999999999


Q ss_pred             CCceEEE-------------EEeecCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCccccEEEEEEEEEEC
Q psy8618         161 SSSLLFK-------------VSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDR  227 (232)
Q Consensus       161 ~~~~~~~-------------v~~~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a~D~  227 (232)
                      ...|.++             |+++|.|.+.|+.|.|+|.++ +..+.|.|+..+|+|.+..+||+|.. .|.+.|+|.|+
T Consensus       376 e~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sg-n~~G~f~id~~tGel~vv~plD~e~~-~ytl~IrAqDg  453 (2531)
T KOG4289|consen  376 EKRYVVQVREDVTPPAVVLRVTATDRDKGTNGKVHYSIASG-NGRGQFYIDSLTGELDVVEPLDFENS-EYTLRIRAQDG  453 (2531)
T ss_pred             ccceEEEecccCCCCceEEEEEecccCCCcCceEEEEeecc-CccccEEEecccceEEEeccccccCC-eeEEEEEcccC
Confidence            9998665             556999999999999999998 88999999999999999999999999 89999999999


Q ss_pred             CccC
Q psy8618         228 GKET  231 (232)
Q Consensus       228 g~~~  231 (232)
                      |.|+
T Consensus       454 grPp  457 (2531)
T KOG4289|consen  454 GRPP  457 (2531)
T ss_pred             CCCC
Confidence            9997

>KOG4289|consensus

Probab=100.00  E-value=7.2e-42  Score=303.08  Aligned_cols=222  Identities=39%  Similarity=0.620  Sum_probs=208.8

Q ss_pred             eEecCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCC
Q psy8618           2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDG   81 (232)
Q Consensus         2 i~~~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~   81 (232)
                      |.+..+||||+...|.|.|.|+|.|.++...++.|.|.|.|+|||+|.|... .|.++|.|+..+++.|.++.|+|.|.|
T Consensus       326 I~T~a~lDRE~~~~y~L~VeAsDqG~~pgp~Ta~V~itV~D~NDNaPqFse~-~Yvvqv~Edvt~~avvlrV~AtDrD~g  404 (2531)
T KOG4289|consen  326 ISTRAPLDREELESYQLDVEASDQGRPPGPRTAMVEITVEDENDNAPQFSEK-RYVVQVREDVTPPAVVLRVTATDRDKG  404 (2531)
T ss_pred             eeccCccCHHhhhheEEEEEeccCCCCCCCceEEEEEEEEecCCCCcccccc-ceEEEecccCCCCceEEEEEecccCCC
Confidence            6788999999999999999999999988878999999999999999999998 799999999999999999999999999


Q ss_pred             CCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeCCCCCcceeEEEEEEEEecCCCCCeeeC
Q psy8618          82 SNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTS  161 (232)
Q Consensus        82 ~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d~Nd~~P~f~~  161 (232)
                      .|+.+.|+|.+|   +..+-|.||..||+|.+..+||+|.. .|++.|.|.|+|.|+++.+.-+.|+|.|+|||+|.|..
T Consensus       405 ~Ng~VHYsi~Sg---n~~G~f~id~~tGel~vv~plD~e~~-~ytl~IrAqDggrPpLsn~sgl~iqVlDINDhaPifvs  480 (2531)
T KOG4289|consen  405 TNGKVHYSIASG---NGRGQFYIDSLTGELDVVEPLDFENS-EYTLRIRAQDGGRPPLSNTSGLVIQVLDINDHAPIFVS  480 (2531)
T ss_pred             cCceEEEEeecc---CccccEEEecccceEEEeccccccCC-eeEEEEEcccCCCCCccCCCceEEEEEecCCCCceeEe
Confidence            999999999999   77789999999999999999999988 99999999999999999998888999999999999987


Q ss_pred             Cce-------------EEEEEeecCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCccccEEEEEEEEEECC
Q psy8618         162 SSL-------------LFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRG  228 (232)
Q Consensus       162 ~~~-------------~~~v~~~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a~D~g  228 (232)
                      ..+             ...+.+.|.|.+.++.+.|++.+    .++|.|+..+|.|.+.|.||||+...|.|.|+|+|+|
T Consensus       481 tpfq~tvlEnv~lg~~v~~vqaidadsg~na~l~y~laG----~~pf~I~~~SG~Itvtk~ldrEt~~~ysl~V~ard~g  556 (2531)
T KOG4289|consen  481 TPFQATVLENVPLGYLVCHVQAIDADSGENARLHYSLAG----VGPFQINNGSGWITVTKELDRETVEHYSLGVEARDHG  556 (2531)
T ss_pred             chhhhhhhhcccccceEEEEecccCCCCcccceeeeecc----CCCeeEecCCceEEEeecccccccceEEEEEEEcCCC
Confidence            654             45677799999999999999976    4599999999999999999999999999999999999


Q ss_pred             ccCC
Q psy8618         229 KETQ  232 (232)
Q Consensus       229 ~~~q  232 (232)
                      .|+.
T Consensus       557 tp~l  560 (2531)
T KOG4289|consen  557 TPPL  560 (2531)
T ss_pred             CCcc
Confidence            9973

>KOG1219|consensus

Probab=100.00  E-value=3.4e-37  Score=281.22  Aligned_cols=225  Identities=34%  Similarity=0.485  Sum_probs=211.5

Q ss_pred             eEecCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCC--CCeecCCCceEEEEecCCCCCcEEEEEEEEeCC
Q psy8618           2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDN--APELVDPQEDVISVREEQPPGTEVVRARAVDKD   79 (232)
Q Consensus         2 i~~~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~--~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D   79 (232)
                      +.+-++||+|+.+.|.|.|.|.|.|.|.+++.+.+.|.|.|+|+|  ||.|..- ....+|.||+|.|+.++.+.|.|.|
T Consensus       903 vfi~~~LDf~k~~fynLsv~a~d~g~p~lss~chl~Vevldv~enlhpp~F~~~-v~e~~V~EnapiGT~vi~i~A~ded  981 (4289)
T KOG1219|consen  903 VFIGKPLDFEKSDFYNLSVTAVDRGTPILSSICHLEVEVLDVNENLHPPEFISF-VTEGHVLENAPIGTIVIRIQARDED  981 (4289)
T ss_pred             EEEecccccccccceEEEEEEecCCCcceeeeEEEEEEEeccCCCCCCcchhee-eeeeeEeecCCcceEEEEEEEecCC
Confidence            567889999999999999999999999899999999999999887  8999866 5679999999999999999999999


Q ss_pred             CCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeCCCCCcceeEEEEEEEEecCCCCCee
Q psy8618          80 DGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF  159 (232)
Q Consensus        80 ~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d~Nd~~P~f  159 (232)
                      .|-.+.+.|+|..|   +..+.|+|+..+|.|++.+.||||....|.|+|.|.|.|.+++++.+.+.|.|.|+|||+|+|
T Consensus       982 sgldg~l~Y~I~~g---dg~g~FsId~~tG~irTl~~lDrE~ks~YwltveA~D~gt~~~ssv~~vyI~ieDvNDn~Pq~ 1058 (4289)
T KOG1219|consen  982 SGLDGELSYKIRTG---DGDGIFSIDSTTGSIRTLKALDREKKSSYWLTVEAKDLGTVPLSSVCEVYIEIEDVNDNVPQF 1058 (4289)
T ss_pred             CCccceEEEEEEcC---CcceeEEecCCcceEeechhhchhhcceEEEEEEEEecCCCccccceeEEEEEEecCCCCccc
Confidence            99999999999988   778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCceEE-------------EEEeecCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCccccEEEEEEEEEE
Q psy8618         160 TSSSLLF-------------KVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATD  226 (232)
Q Consensus       160 ~~~~~~~-------------~v~~~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a~D  226 (232)
                      ..+.|..             ++.+.|+|...++.+.|.|..| +..+.|.|++.+|.|...+.||+|++..+.|.|.++|
T Consensus      1059 s~pvy~asI~enSp~~vsivq~ea~D~Dsssn~kLmykI~sG-nyq~FF~Id~~TG~iTt~r~LDRE~qdEHiLeVTi~D 1137 (4289)
T KOG1219|consen 1059 SSPVYYASISENSPETVSIVQAEANDPDSSSNQKLMYKITSG-NYQGFFQIDPETGLITTIRRLDREKQDEHILEVTIQD 1137 (4289)
T ss_pred             CCceEeeeeccCCCCceEEEEeccCCCCcccCcceEEEEccC-CccceEEEccccceeeeehhhcccccccceEEEEEec
Confidence            9888754             4455888988899999999998 8999999999999999999999999999999999999


Q ss_pred             CCccC
Q psy8618         227 RGKET  231 (232)
Q Consensus       227 ~g~~~  231 (232)
                      +|.|.
T Consensus      1138 ~gep~ 1142 (4289)
T KOG1219|consen 1138 NGEPW 1142 (4289)
T ss_pred             CCCCc
Confidence            99996

>KOG1219|consensus

Probab=100.00  E-value=1.8e-36  Score=276.60  Aligned_cols=221  Identities=36%  Similarity=0.533  Sum_probs=201.6

Q ss_pred             eEecCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCC
Q psy8618           2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDG   81 (232)
Q Consensus         2 i~~~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~   81 (232)
                      |.+.++||||.+..|-|++.|+|.|.+++++.+.+.|.|.|+|||+|.|..+ .|..+|.|++|.+..|.++.|.|+|..
T Consensus      1010 irTl~~lDrE~ks~YwltveA~D~gt~~~ssv~~vyI~ieDvNDn~Pq~s~p-vy~asI~enSp~~vsivq~ea~D~Dss 1088 (4289)
T KOG1219|consen 1010 IRTLKALDREKKSSYWLTVEAKDLGTVPLSSVCEVYIEIEDVNDNVPQFSSP-VYYASISENSPETVSIVQAEANDPDSS 1088 (4289)
T ss_pred             EeechhhchhhcceEEEEEEEEecCCCccccceeEEEEEEecCCCCcccCCc-eEeeeeccCCCCceEEEEeccCCCCcc
Confidence            6788999999999999999999999999999999999999999999999998 889999999999999999999999988


Q ss_pred             CCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeCCCCCcceeEEEEEEEEecCCCCCeeeC
Q psy8618          82 SNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTS  161 (232)
Q Consensus        82 ~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d~Nd~~P~f~~  161 (232)
                      .++++.|.|.+|   +..++|.|++.||.|+..+.||||.+..|.|.|+++|.|.|.+++...|.|.|.|+|||+|+|.+
T Consensus      1089 sn~kLmykI~sG---nyq~FF~Id~~TG~iTt~r~LDRE~qdEHiLeVTi~D~gep~l~s~~rviV~IldvNdnsp~Flq 1165 (4289)
T KOG1219|consen 1089 SNQKLMYKITSG---NYQGFFQIDPETGLITTIRRLDREKQDEHILEVTIQDNGEPWLCSNQRVIVSILDVNDNSPRFLQ 1165 (4289)
T ss_pred             cCcceEEEEccC---CccceEEEccccceeeeehhhcccccccceEEEEEecCCCCccccceEEEEEEeeccCCchhhhh
Confidence            899999999999   78899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CceEEEEE-----------eecCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCccccEEEEE-EEEEECCc
Q psy8618         162 SSLLFKVS-----------ASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFP-VVATDRGK  229 (232)
Q Consensus       162 ~~~~~~v~-----------~~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~-V~a~D~g~  229 (232)
                      ..+.++++           +.|.|.+++++|+|+|..| +  ..|.|+..+|.+.. +.++  ..+.|.+. |.|+|+|.
T Consensus      1166 k~~~~~v~~r~s~plyRl~a~d~DeG~narityniedg-d--e~FsID~~t~vVss-s~~~--~~~eydi~~Ikatd~g~ 1239 (4289)
T KOG1219|consen 1166 KKTFLRVPERSSPPLYRLAAQDNDEGNNARITYNIEDG-D--EVFSIDIATGVVSS-STLD--PAGEYDILGIKATDRGA 1239 (4289)
T ss_pred             heeEEEeeeccCCceeEEEEEecCCCcceEEEEecccC-c--eEEEEeccCceEEe-eecc--CCcceeEeeEEEecCCC
Confidence            88766544           5899999999999999976 3  33999999995544 4454  34468887 99999999


Q ss_pred             cCC
Q psy8618         230 ETQ  232 (232)
Q Consensus       230 ~~q  232 (232)
                      |.|
T Consensus      1240 pq~ 1242 (4289)
T KOG1219|consen 1240 PQA 1242 (4289)
T ss_pred             Ccc
Confidence            964

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=100.00  E-value=3.1e-30  Score=198.18  Aligned_cols=171  Identities=42%  Similarity=0.640  Sum_probs=153.7

Q ss_pred             eEEEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeCC
Q psy8618          56 DVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNG  135 (232)
Q Consensus        56 ~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~  135 (232)
                      |.+.++|+.+.|+.++++.|.|+|.+.++.++|+|.++   ....+|.|++.+|.|++.+.||||....|.|.|.|+|.+
T Consensus         2 ~~~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~---~~~~~F~i~~~tG~l~~~~~lD~e~~~~~~l~v~a~D~g   78 (199)
T cd00031           2 YSVSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGG---NEDGLFSIDPNTGVITTTKPLDREEQSEYTLTVVASDGG   78 (199)
T ss_pred             eEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCC---CCcccEEEeCCCCEEEECCCCCCcCCceEEEEEEEEECC
Confidence            57899999999999999999999988888999999876   333799999999999999999999999999999999988


Q ss_pred             CCCcceeEEEEEEEEecCCCCCeeeCCce-------------EEEEEeecCCCCCCeEEEEEEccCCCCCCcEEEECCce
Q psy8618         136 FPSRQTVRLLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSG  202 (232)
Q Consensus       136 ~~~~~~~~~v~i~v~d~Nd~~P~f~~~~~-------------~~~v~~~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G  202 (232)
                      .+.+++...+.|.|.|+||++|.|....|             .+++.+.|+|.+.++.++|+|..+ .....|.|++.+|
T Consensus        79 ~~~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~~~~a~D~D~~~~~~~~y~l~~~-~~~~~f~i~~~~G  157 (199)
T cd00031          79 GPPLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVGTVTATDADSGENAKLTYSILSG-NDKELFSIDPNTG  157 (199)
T ss_pred             cCcceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEEEEEEEcCCCCCCccEEEEEeCC-CCCCEEEEeCCce
Confidence            88777889999999999999999985554             445666899988889999999985 3358999999999


Q ss_pred             EEEEeecCCCccccEEEEEEEEEECCcc
Q psy8618         203 EICISQDLDFESRSSYEFPVVATDRGKE  230 (232)
Q Consensus       203 ~i~~~~~ld~e~~~~y~l~V~a~D~g~~  230 (232)
                      .|.+.+.||+|....|.|.|.|+|+|.|
T Consensus       158 ~i~~~~~ld~e~~~~~~l~v~a~D~~~~  185 (199)
T cd00031         158 IITLAKPLDREEKSSYELTVVATDGGGP  185 (199)
T ss_pred             EEEeCCccCCccCceEEEEEEEEECCCC
Confidence            9999999999999999999999999854

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=99.95  E-value=7.2e-26  Score=173.92  Aligned_cols=147  Identities=44%  Similarity=0.651  Sum_probs=134.5

Q ss_pred             CeEecCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCC
Q psy8618           1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDD   80 (232)
Q Consensus         1 ~i~~~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~   80 (232)
                      +|.+.+.||||....|.|.|.|.|.|.+..++...++|.|.|+|||+|.|... .|.+.+.|+.+.|+.++++.|+|+|.
T Consensus        53 ~l~~~~~lD~e~~~~~~l~v~a~D~g~~~~~~~~~v~I~V~d~Nd~~P~~~~~-~~~~~v~e~~~~~~~i~~~~a~D~D~  131 (199)
T cd00031          53 VITTTKPLDREEQSEYTLTVVASDGGGPPLSSTATVTVTVLDVNDNPPVFEQS-SYEASVPENAPPGTVVGTVTATDADS  131 (199)
T ss_pred             EEEECCCCCCcCCceEEEEEEEEECCcCcceeEEEEEEEEccCCCCCCccccc-ceEEEEeCCCCCCCEEEEEEEEcCCC
Confidence            37788999999999999999999988877779999999999999999999976 68899999999999999999999998


Q ss_pred             CCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeCCCCCcceeEEEEEEEEe
Q psy8618          81 GSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD  151 (232)
Q Consensus        81 ~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d  151 (232)
                      +.++.++|+|.++   ....+|.|++.+|.|++.+.||+|....|.+.|.|+|.+.+.+++.+.+.|.|.|
T Consensus       132 ~~~~~~~y~l~~~---~~~~~f~i~~~~G~i~~~~~ld~e~~~~~~l~v~a~D~~~~~~~~~~~i~i~v~d  199 (199)
T cd00031         132 GENAKLTYSILSG---NDKELFSIDPNTGIITLAKPLDREEKSSYELTVVATDGGGPPLSSTATVTVTVLD  199 (199)
T ss_pred             CCCccEEEEEeCC---CCCCEEEEeCCceEEEeCCccCCccCceEEEEEEEEECCCCCceeEEEEEEEEEC
Confidence            8889999999766   3357999999999999999999999999999999999988778888888888865

>KOG1834|consensus

Probab=99.84  E-value=2.3e-19  Score=151.42  Aligned_cols=187  Identities=22%  Similarity=0.329  Sum_probs=151.1

Q ss_pred             EEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCC---CCcEEEEEEeeCCCCCCcccEEEeCCc--eEE
Q psy8618          37 KISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDG---SNATISYSILKGRDTDGYGVFTIDPIS--GVI  111 (232)
Q Consensus        37 ~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~~v~y~i~~~~~~~~~~~f~id~~t--G~i  111 (232)
                      .....-+|-+.|+...  .|...|.||...-.....+.|.|.|.+   .+..+.|.|.+. + -......+|..|  |.|
T Consensus        20 ~~~aarankhkpwie~--ey~gvV~Endntvll~Ppl~aLdkdaplr~ageiC~fklhgq-~-vPFdavVvdK~TGegvl   95 (952)
T KOG1834|consen   20 HHHAARANKHKPWIEE--EYHGVVTENDNTVLLDPPLAALDKDAPLRYAGEICGFKLHGQ-P-VPFDAVVVDKYTGEGVL   95 (952)
T ss_pred             ccccccccccCccccc--ceeEEEEeCCceEEeCCCeeeecCCCCcccccccceeEecCC-C-CCceEEEEeccCCceEE
Confidence            3445667888997654  578999999986666677899999874   234467777543 2 233444557666  589


Q ss_pred             EECccCCccCCCEEEEEEEEEeCCCCC------cceeEEEEEEEEecCCCCCeeeCCceEE------------EEEeecC
Q psy8618         112 RTKSVLDHEDRSIYRIAVAATDNGFPS------RQTVRLLRVEVLDLNDNRPTFTSSSLLF------------KVSASDP  173 (232)
Q Consensus       112 ~~~~~ld~e~~~~~~l~v~a~d~~~~~------~~~~~~v~i~v~d~Nd~~P~f~~~~~~~------------~v~~~D~  173 (232)
                      +.+.+||+|.+..|+|+|+|.|+|..+      ++..++|.|+|.|+|+++|.|..+.|.+            .|.+.|.
T Consensus        96 RaK~~lDCelqkeytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~EGK~yd~il~veAiD~  175 (952)
T KOG1834|consen   96 RAKEPLDCELQKEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVTEGKVYDSILRVEAIDK  175 (952)
T ss_pred             eecCcccccccccceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccceeeEEecceeeeeeEEEEeecC
Confidence            999999999999999999999987643      5677899999999999999999988855            4566899


Q ss_pred             CCCC--CeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCccccEEEEEEEEEECCccC
Q psy8618         174 DCGV--NAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGKET  231 (232)
Q Consensus       174 d~~~--~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a~D~g~~~  231 (232)
                      |+++  +..+.|.|.   ...-+|.|+ +.|.|+.+.+|+|.....|.|+|+|.|+|+.+
T Consensus       176 DCspq~sqIC~YEI~---t~d~PFaId-n~G~irnTekLny~ke~~Y~ltVtAyDCg~kr  231 (952)
T KOG1834|consen  176 DCSPQYSQICEYEIT---TPDVPFAID-NDGNIRNTEKLNYTKEHQYKLTVTAYDCGKKR  231 (952)
T ss_pred             CCCCcccceeEEEec---CCCCceEEc-CCCccccccccccccceeEEEEEEEEeccccc
Confidence            9987  466799998   468899999 89999999999999999999999999999753

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.83  E-value=3e-19  Score=120.48  Aligned_cols=92  Identities=43%  Similarity=0.668  Sum_probs=86.9

Q ss_pred             eEEEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeC-
Q psy8618          56 DVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDN-  134 (232)
Q Consensus        56 ~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~-  134 (232)
                      |.+.|+|+.++|+.++++.|.|+|.+.++.+.|+|..+   +..++|.|++.+|.|++.+.||||....|.|.|.|+|. 
T Consensus         1 Y~~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~---~~~~~F~I~~~tg~i~~~~~LD~E~~~~y~l~v~a~D~~   77 (93)
T PF00028_consen    1 YSFSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGG---NPDGLFSIDPNTGEISLKKPLDRETQSSYQLTVRATDSG   77 (93)
T ss_dssp             EEEEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEET---TSTTSEEEETTTTEEEESSSSCTTTTSEEEEEEEEEETT
T ss_pred             CEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecC---cccCceEEeeeeeccccceecCcccCCEEEEEEEEEECC
Confidence            67999999999999999999999999999999999987   55889999999999999999999999999999999999 


Q ss_pred             CCCCcceeEEEEEEEE
Q psy8618         135 GFPSRQTVRLLRVEVL  150 (232)
Q Consensus       135 ~~~~~~~~~~v~i~v~  150 (232)
                      +.|++++.+.|.|+|.
T Consensus        78 ~~~~~~~~~~V~I~V~   93 (93)
T PF00028_consen   78 GSPPLSSTATVTINVL   93 (93)
T ss_dssp             TSSEEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEEEEEC
Confidence            8889999999999874

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>smart00112 CA Cadherin repeats

Probab=99.76  E-value=1.3e-17  Score=108.90  Aligned_cols=79  Identities=44%  Similarity=0.736  Sum_probs=72.6

Q ss_pred             EeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeCCCCCcceeEEEEEEEEecCCC
Q psy8618          76 VDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDN  155 (232)
Q Consensus        76 ~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d~Nd~  155 (232)
                      +|+|.+.++.++|+|.++   ....+|.|++.+|.|++.++||||....|.|.|.|.|.+.|++++.+.|.|+|.|+|||
T Consensus         1 ~D~D~g~n~~i~Y~i~~~---~~~~~F~i~~~tg~i~~~~~LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~   77 (79)
T smart00112        1 TDADSGENGKVTYSILSG---NEDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDN   77 (79)
T ss_pred             CCCCCCcCcEEEEEEecC---CCCCEEEEeCCccEEEeCCccCeeCCCeEEEEEEEEECCCCCcccEEEEEEEEEECCCC
Confidence            478888889999999876   33389999999999999999999999999999999999998899999999999999999


Q ss_pred             CC
Q psy8618         156 RP  157 (232)
Q Consensus       156 ~P  157 (232)
                      +|
T Consensus        78 ~P   79 (79)
T smart00112       78 AP   79 (79)
T ss_pred             CC
Confidence            98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>KOG1834|consensus

Probab=99.74  E-value=7.7e-17  Score=136.35  Aligned_cols=143  Identities=29%  Similarity=0.389  Sum_probs=121.7

Q ss_pred             eEecCCCCcCCCCeEEEEEEEEeCCCC------CceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEE
Q psy8618           2 ISTREPLDREARSSHELVAEARDQGSP------PRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARA   75 (232)
Q Consensus         2 i~~~~~lD~E~~~~~~l~v~a~d~~~~------~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a   75 (232)
                      |+.+.+||-|.++.|+|+|+|.|-|..      ..+-.++|+|+|.|+|+++|+|..+ .|.+.|.|.-.. ..|+++.|
T Consensus        95 lRaK~~lDCelqkeytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep-~Yka~V~EGK~y-d~il~veA  172 (952)
T KOG1834|consen   95 LRAKEPLDCELQKEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEP-WYKAHVTEGKVY-DSILRVEA  172 (952)
T ss_pred             EeecCcccccccccceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhccc-ceeeEEecceee-eeeEEEEe
Confidence            678899999999999999999996543      3567899999999999999999998 788999998654 55899999


Q ss_pred             EeCCCCC--CcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeCCCCCcceeEEEEEEEEec
Q psy8618          76 VDKDDGS--NATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDL  152 (232)
Q Consensus        76 ~D~D~~~--~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d~  152 (232)
                      .|.|-++  ...+.|.|+.     ..-.|.||. .|.|+.+.+|.|.....|.|+|+|.|+|.....+.+.|+|+|...
T Consensus       173 iD~DCspq~sqIC~YEI~t-----~d~PFaIdn-~G~irnTekLny~ke~~Y~ltVtAyDCg~kraa~d~lV~v~Vkp~  245 (952)
T KOG1834|consen  173 IDKDCSPQYSQICEYEITT-----PDVPFAIDN-DGNIRNTEKLNYTKEHQYKLTVTAYDCGKKRAASDSLVTVHVKPT  245 (952)
T ss_pred             ecCCCCCcccceeEEEecC-----CCCceEEcC-CCccccccccccccceeEEEEEEEEecccccccCcceEEEEecCc
Confidence            9999754  4557889974     455699997 799999999999999999999999999986655657788888654

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.36  E-value=4.8e-12  Score=85.10  Aligned_cols=69  Identities=33%  Similarity=0.565  Sum_probs=63.3

Q ss_pred             CceEEEEEeecCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCccccEEEEEEEEEEC-CccC
Q psy8618         162 SSLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDR-GKET  231 (232)
Q Consensus       162 ~~~~~~v~~~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a~D~-g~~~  231 (232)
                      ....+.+.+.|+|.+.++.+.|+|..+ +....|.|++.+|.|.+.+.||||..+.|.|.|.|+|. |.|+
T Consensus        12 g~~v~~v~a~D~D~~~n~~i~y~i~~~-~~~~~F~I~~~tg~i~~~~~LD~E~~~~y~l~v~a~D~~~~~~   81 (93)
T PF00028_consen   12 GTVVGQVTATDPDSGPNSQITYSILGG-NPDGLFSIDPNTGEISLKKPLDRETQSSYQLTVRATDSGGSPP   81 (93)
T ss_dssp             SSEEEEEEEEESSTSTTSSEEEEEEET-TSTTSEEEETTTTEEEESSSSCTTTTSEEEEEEEEEETTTSSE
T ss_pred             CCEEEEEEEEeCCCCCCceEEEEEecC-cccCceEEeeeeeccccceecCcccCCEEEEEEEEEECCCCCC
Confidence            456788999999999999999999987 55899999999999999999999999999999999999 7775

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>smart00112 CA Cadherin repeats

Probab=99.21  E-value=7.6e-11  Score=76.73  Aligned_cols=60  Identities=32%  Similarity=0.505  Sum_probs=53.6

Q ss_pred             ecCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCccccEEEEEEEEEECCccC
Q psy8618         171 SDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGKET  231 (232)
Q Consensus       171 ~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a~D~g~~~  231 (232)
                      +|+|.+.++.+.|+|..+ .....|.|++.+|.|.+.++||||....|.|.|.|+|+|.|+
T Consensus         1 ~D~D~g~n~~i~Y~i~~~-~~~~~F~i~~~tg~i~~~~~LD~e~~~~y~l~v~a~D~~~~~   60 (79)
T smart00112        1 TDADSGENGKVTYSILSG-NEDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPP   60 (79)
T ss_pred             CCCCCCcCcEEEEEEecC-CCCCEEEEeCCccEEEeCCccCeeCCCeEEEEEEEEECCCCC
Confidence            377888889999999976 334899999999999999999999999999999999999864

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=97.96  E-value=1.3e-05  Score=52.34  Aligned_cols=61  Identities=25%  Similarity=0.357  Sum_probs=39.5

Q ss_pred             EEEEecCCCCCcEEEEEEEEeCCCCCC--cEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccC
Q psy8618          57 VISVREEQPPGTEVVRARAVDKDDGSN--ATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHED  121 (232)
Q Consensus        57 ~~~v~E~~~~g~~v~~v~a~D~D~~~~--~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~  121 (232)
                      ...|+|+.++|+.|+.+ |.|......  ..-.|++++.   ....+|.++..+|.|.++..+|||.
T Consensus         4 ~YsV~EE~~~Gt~IGni-a~dL~l~~~~l~~~~~ri~s~---~~~~~~~v~~~tG~L~v~~rIDRE~   66 (84)
T PF08266_consen    4 RYSVPEEMPPGTVIGNI-AKDLGLDPQSLSSRNFRIVSE---GNSQYFRVNEKTGDLFVSERIDREE   66 (84)
T ss_dssp             EEEEESS--TT-EEEEC-CCCCT--HHHHCCTTBEEE-S---SSS-SEEE-TTTSEEEESS--SCCC
T ss_pred             EEEeecCCCCCCEEEEh-HHhhCCCcccccccceEEeec---CCcceeEecCCceeEEeCCccCHHH
Confidence            57899999999999998 545433210  1135777665   5678999999999999999999996

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=97.36  E-value=0.003  Score=41.76  Aligned_cols=78  Identities=13%  Similarity=0.123  Sum_probs=41.4

Q ss_pred             CCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEE
Q psy8618          47 APELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYR  126 (232)
Q Consensus        47 ~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~  126 (232)
                      .|-|... .|.+.|+.+...|..|++|.-.|..  .+..+.|.-.      +. .|.|.+ .|.|.+++++... ...-.
T Consensus         3 ~pGF~~~-~~~~~Vp~~l~~g~~lg~V~f~dC~--~~~~~~~~ss------Dp-dF~V~~-DGsVy~~r~v~l~-~~~~~   70 (90)
T PF08758_consen    3 RPGFSQK-KYTFEVPSNLEAGQPLGKVNFEDCT--GRRRVIFESS------DP-DFRVLE-DGSVYAKRPVQLS-SEQRS   70 (90)
T ss_dssp             --B--S--EEEE----SS-SS--EEE---B--S--S---EEEE---------S-EEEEET-TTEEEEES--S-S-SS-EE
T ss_pred             cCCcccc-eEEEEcCchhhCCcEEEEEEeccCC--CCCceEEecC------CC-CEEEcC-CCeEEEeeeEecC-CCceE
Confidence            4778877 7889999999999999999999885  3445777652      22 699998 7999999998654 33457


Q ss_pred             EEEEEEeCCC
Q psy8618         127 IAVAATDNGF  136 (232)
Q Consensus       127 l~v~a~d~~~  136 (232)
                      |.|.|.|...
T Consensus        71 F~V~a~D~~~   80 (90)
T PF08758_consen   71 FTVHAWDSQT   80 (90)
T ss_dssp             EEEEEEETTT
T ss_pred             EEEEEECCCC
Confidence            9999999865

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=97.24  E-value=0.012  Score=39.59  Aligned_cols=73  Identities=21%  Similarity=0.260  Sum_probs=52.7

Q ss_pred             EEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeCCCCCcceeEEEEEEEEecCC
Q psy8618          75 AVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLND  154 (232)
Q Consensus        75 a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d~Nd  154 (232)
                      ..|.|   +..++|++..........|...++.++.+.- .+. .+..+.|.+.|.|+|+..  .+....+.|.|.+.|+
T Consensus        24 F~d~d---~~~lty~~~~~~~~~lP~Wl~fd~~~~~~~G-tP~-~~~~g~~~i~v~a~D~~g--~~~~~~f~i~V~~~~~   96 (97)
T smart00736       24 FTDAD---GDTLTYSATLSDGSALPSWLSFDSDTGTLSG-TPT-NSDVGSLSLKVTATDSSG--ASASDTFTITVVNTND   96 (97)
T ss_pred             eECCC---CCeEEEEEEeCCCCCCCCeEEEeCCCCEEEE-ECC-CCCCcEEEEEEEEEECCC--CEEEEEEEEEEeCCCC
Confidence            46665   4468998864432244679999998888776 344 334577999999999864  5566779999988876

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=96.62  E-value=0.035  Score=37.23  Aligned_cols=87  Identities=18%  Similarity=0.259  Sum_probs=55.6

Q ss_pred             EEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECc--------cCCccCCCEEEEEEEEEeCCCCCccee
Q psy8618          71 VRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKS--------VLDHEDRSIYRIAVAATDNGFPSRQTV  142 (232)
Q Consensus        71 ~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~--------~ld~e~~~~~~l~v~a~d~~~~~~~~~  142 (232)
                      +++.++|+|.+..  ..++....  ....+.|.|++ +|.....-        .|...+.-.-+|++.+.|+      ..
T Consensus         2 G~Lt~sD~D~gd~--~~~s~~~~--~g~yGtlti~~-~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DG------tt   70 (99)
T TIGR01965         2 GQLTISDADAGQA--HFIAQTDA--AGQYGTFSIDA-DGQWTYQADNSQTAVQALKAGETLTDTFTVTSADG------TS   70 (99)
T ss_pred             CceEEeCCCCCCc--eEEecccc--cCCcEEEEECC-CCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCC------Ce
Confidence            4688999996543  45555322  14577899987 67654431        2332234457788889996      26


Q ss_pred             EEEEEEEEecCCCCCeeeCCceEEEEEe
Q psy8618         143 RLLRVEVLDLNDNRPTFTSSSLLFKVSA  170 (232)
Q Consensus       143 ~~v~i~v~d~Nd~~P~f~~~~~~~~v~~  170 (232)
                      ..|.|+|.-.|| +|...... ...+.|
T Consensus        71 ~~vtItI~GtND-apvi~~~~-~g~v~E   96 (99)
T TIGR01965        71 QTVTITITGAND-AAVIGGAD-TGSVTE   96 (99)
T ss_pred             EEEEEEEEccCC-CCEEeccc-ceeEec
Confidence            789999999999 77654322 245554

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=96.09  E-value=0.011  Score=38.50  Aligned_cols=32  Identities=19%  Similarity=0.449  Sum_probs=23.1

Q ss_pred             EEEEccCCCCCCcEEEECCceEEEEeecCCCcc
Q psy8618         182 NYTLGESPSRTNHFYMKSVSGEICISQDLDFES  214 (232)
Q Consensus       182 ~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~  214 (232)
                      .|.+... ....+|.++..+|.|.+...+|+|.
T Consensus        35 ~~ri~s~-~~~~~~~v~~~tG~L~v~~rIDRE~   66 (84)
T PF08266_consen   35 NFRIVSE-GNSQYFRVNEKTGDLFVSERIDREE   66 (84)
T ss_dssp             TBEEE-S-SSS-SEEE-TTTSEEEESS--SCCC
T ss_pred             ceEEeec-CCcceeEecCCceeEEeCCccCHHH
Confidence            6666654 5689999999999999999999986

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=94.89  E-value=0.17  Score=33.46  Aligned_cols=69  Identities=22%  Similarity=0.349  Sum_probs=34.3

Q ss_pred             CCeeeCCceEEEEEee-----------cCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCccccEEEEEEEE
Q psy8618         156 RPTFTSSSLLFKVSAS-----------DPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVA  224 (232)
Q Consensus       156 ~P~f~~~~~~~~v~~~-----------D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a  224 (232)
                      .|-|....|.+.|+..           =.|+.....+.|..     .+..|.|. ..|.|++++++..... .-.|.|.|
T Consensus         3 ~pGF~~~~~~~~Vp~~l~~g~~lg~V~f~dC~~~~~~~~~s-----sDpdF~V~-~DGsVy~~r~v~l~~~-~~~F~V~a   75 (90)
T PF08758_consen    3 RPGFSQKKYTFEVPSNLEAGQPLGKVNFEDCTGRRRVIFES-----SDPDFRVL-EDGSVYAKRPVQLSSE-QRSFTVHA   75 (90)
T ss_dssp             --B--S-EEEE----SS-SS--EEE---B--SS---EEEE--------SEEEEE-TTTEEEEES--S-SSS--EEEEEEE
T ss_pred             cCCcccceEEEEcCchhhCCcEEEEEEeccCCCCCceEEec-----CCCCEEEc-CCCeEEEeeeEecCCC-ceEEEEEE
Confidence            4667777777777651           01232233345553     24589999 6999999999887654 35799999


Q ss_pred             EECCccC
Q psy8618         225 TDRGKET  231 (232)
Q Consensus       225 ~D~g~~~  231 (232)
                      .|.....
T Consensus        76 ~D~~~~~   82 (90)
T PF08758_consen   76 WDSQTQE   82 (90)
T ss_dssp             EETTTTE
T ss_pred             ECCCCCe
Confidence            9987653

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)

Probab=92.89  E-value=2.8  Score=30.81  Aligned_cols=129  Identities=20%  Similarity=0.257  Sum_probs=65.2

Q ss_pred             CCeEEEEE-EEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCC-CcEEEEEEEEeCCCCCCcEEEEEE
Q psy8618          13 RSSHELVA-EARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPP-GTEVVRARAVDKDDGSNATISYSI   90 (232)
Q Consensus        13 ~~~~~l~v-~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~-g~~v~~v~a~D~D~~~~~~v~y~i   90 (232)
                      .-.|.+++ .|.|..+...+.....++.   ++..+|.+.-.  ....+..+... +..-..+.++|.-.+. .....++
T Consensus        14 dG~Y~l~~~~a~D~agN~~~~~~~~~~~---iD~T~Ptisi~--~~~~~~~g~~v~~~~~i~i~~tD~~~~~-~i~sv~l   87 (158)
T PF13750_consen   14 DGSYTLTVVTATDAAGNTSTSTVSETFT---IDNTPPTISIS--DGASVANGSTVYGLVNISINVTDNSDDS-KITSVSL   87 (158)
T ss_pred             CccEEEEEEEEEecCCCEEEEEEeeEEE---EcCCCCEEEEe--cCCccCCCccccceeeeEEEEEeCCCCc-eEEEEEE
Confidence            35899999 7999877433333332333   34446755430  00122222222 3333557777765433 3446666


Q ss_pred             eeCCCCCCcccEEEe-CCceEEEEC--ccC-CccCCCEEEEEEEEEeCCCCCcceeEEEEEEEE
Q psy8618          91 LKGRDTDGYGVFTID-PISGVIRTK--SVL-DHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVL  150 (232)
Q Consensus        91 ~~~~~~~~~~~f~id-~~tG~i~~~--~~l-d~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~  150 (232)
                      ..|.. ...-..... ...|...+.  +.+ ..|....|+|+|.|.|..+  ..++..+.+...
T Consensus        88 ~Gg~~-~d~v~ls~~~~~~~~~~~~yp~~fpsle~~~~YtLtV~a~D~aG--N~~~~si~F~y~  148 (158)
T PF13750_consen   88 TGGPA-SDSVSLSWTNKGNGVYTLEYPRIFPSLEADDSYTLTVSATDKAG--NQSTKSISFSYM  148 (158)
T ss_pred             ECCcc-cceEEEeeEeccCceEEeecccccCCcCCCCeEEEEEEEEecCC--CEEEEEEEEEEe
Confidence            44421 122112222 123444443  211 3466789999999999864  344445555544

>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins

Probab=92.26  E-value=1.2  Score=25.68  Aligned_cols=37  Identities=24%  Similarity=0.348  Sum_probs=28.3

Q ss_pred             CCcccEEEeCCceEEEECccCCcc-CCCEEEEEEEEEeCC
Q psy8618          97 DGYGVFTIDPISGVIRTKSVLDHE-DRSIYRIAVAATDNG  135 (232)
Q Consensus        97 ~~~~~f~id~~tG~i~~~~~ld~e-~~~~~~l~v~a~d~~  135 (232)
                      ....+..+|+.+|.|+-.  .+.. ..+.|.|.|.|+|..
T Consensus        11 ~LP~gLs~d~~tG~isGt--p~~~~~~G~y~~~vtatd~~   48 (49)
T PF05345_consen   11 GLPSGLSLDPSTGTISGT--PTSSVQPGTYTFTVTATDGS   48 (49)
T ss_pred             CCCCcEEEeCCCCEEEee--cCCCccccEEEEEEEEEcCC
Confidence            556789999999998875  2233 346899999999964

Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.

>TIGR00845 caca sodium/calcium exchanger 1

Probab=91.62  E-value=13  Score=35.38  Aligned_cols=121  Identities=19%  Similarity=0.255  Sum_probs=61.6

Q ss_pred             CCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEEC--------
Q psy8618          43 VNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTK--------  114 (232)
Q Consensus        43 vNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~--------  114 (232)
                      .||..+.|... .-..++.|+.  |+.-..|.-...|.+..-.|.|+...|+.....+ |.  +.+|.|...        
T Consensus       395 ~dd~~s~i~Fe-~~~Y~V~En~--GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~D-Y~--~~sGTLtF~PGEt~KtI  468 (928)
T TIGR00845       395 ENDPVSKIFFE-PGHYTCLENC--GTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSD-YE--FTEGTLVFKPGETQKEF  468 (928)
T ss_pred             ccCCcceEEec-CCeEEEeecC--cEEEEEEEEccCCCCceEEEEEEccCCccCCCCC-cc--ccCceEEECCCceEEEE
Confidence            45555555554 3467899986  5655665544445444566899887775422111 21  223433322        


Q ss_pred             --ccCC---ccCCCEEEEEEEEEeCCC-------------CCcceeEEEEEEEEecCCCCCeeeCCceEEEEEe
Q psy8618         115 --SVLD---HEDRSIYRIAVAATDNGF-------------PSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSA  170 (232)
Q Consensus       115 --~~ld---~e~~~~~~l~v~a~d~~~-------------~~~~~~~~v~i~v~d~Nd~~P~f~~~~~~~~v~~  170 (232)
                        .-+|   +|....|.+.+.-...+.             .........+|+|.| ||+++.|....-.+.|.|
T Consensus       469 tV~IIDDdi~E~DE~F~V~LSNp~~g~~~G~~~~~~~~~~A~Lg~ps~ATVTIlD-DD~aGIfsFe~~~~sV~E  541 (928)
T TIGR00845       469 RIGIIDDDIFEEDEHFYVRLSNLRVGSEDGILEANHVSAVAQLASPNTATVTILD-DDHAGIFTFEEDVFHVSE  541 (928)
T ss_pred             EEEEccCCCCCCCceEEEEEeCCCCCCcccccccccccccceecCCceEEEEEec-CcccCcccccCceEEEEc
Confidence              1122   333444555444322110             012223356777787 888988765443444544

This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=89.50  E-value=1.6  Score=29.03  Aligned_cols=31  Identities=29%  Similarity=0.314  Sum_probs=26.7

Q ss_pred             CCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCC
Q psy8618          13 RSSHELVAEARDQGSPPRSSRVAVKISVTDVND   45 (232)
Q Consensus        13 ~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd   45 (232)
                      ...|.+.|.|+|+.+  .++...++|.|.+.|+
T Consensus        66 ~g~~~i~v~a~D~~g--~~~~~~f~i~V~~~~~   96 (97)
T smart00736       66 VGSLSLKVTATDSSG--ASASDTFTITVVNTND   96 (97)
T ss_pred             CcEEEEEEEEEECCC--CEEEEEEEEEEeCCCC
Confidence            457999999999876  6788899999999887

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=88.19  E-value=2.6  Score=28.30  Aligned_cols=48  Identities=25%  Similarity=0.316  Sum_probs=33.0

Q ss_pred             CCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCC
Q psy8618           8 LDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQ   64 (232)
Q Consensus         8 lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~   64 (232)
                      |.--+...-++++.+.|+      ....|+|.|...|| +|+....  -...+.|+.
T Consensus        51 L~~Ge~~tdsFtvtv~DG------tt~~vtItI~GtND-apvi~~~--~~g~v~ED~   98 (99)
T TIGR01965        51 LKAGETLTDTFTVTSADG------TSQTVTITITGAND-AAVIGGA--DTGSVTEDS   98 (99)
T ss_pred             hcCCCEEEEEEEEEEeCC------CeEEEEEEEEccCC-CCEEecc--cceeEecCC
Confidence            333334455677788885      27889999999999 8877654  246666653

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain

Probab=87.05  E-value=4.1  Score=29.22  Aligned_cols=58  Identities=22%  Similarity=0.446  Sum_probs=38.5

Q ss_pred             eEecCCCCcCC---CCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCC
Q psy8618           2 ISTREPLDREA---RSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPP   66 (232)
Q Consensus         2 i~~~~~lD~E~---~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~   66 (232)
                      ..+.++||...   .-...|.|.|+|..+-..  ...+.|.|.|  | .|..... . .+.|.|+...
T Consensus        70 ftL~~~lDH~~g~d~l~l~~~v~a~D~DGD~s--~~~l~VtI~D--D-~P~~~~~-~-~~~V~E~~L~  130 (137)
T TIGR03660        70 FTLEGPLDHAAGSDELTLNFPIIATDFDGDTS--SITLPVTIVD--D-VPTITDV-D-ALTVDEDDLP  130 (137)
T ss_pred             EEEcccccCCCCCceEEEeeeEEEEeCCCCcc--ccEEEEEEEC--C-CCeeccc-c-ceEEeccccc
Confidence            35678888743   446778899999776433  3477777776  6 5877654 2 4788886543

This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.

>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins

Probab=85.28  E-value=5.2  Score=22.98  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=28.5

Q ss_pred             CCCCcEEEECCceEEEEeecCCCc-cccEEEEEEEEEECC
Q psy8618         190 SRTNHFYMKSVSGEICISQDLDFE-SRSSYEFPVVATDRG  228 (232)
Q Consensus       190 ~~~~~f~i~~~~G~i~~~~~ld~e-~~~~y~l~V~a~D~g  228 (232)
                      .-.....||+.+|.|.-.-  +.. ..+.|.+.|.|+|..
T Consensus        11 ~LP~gLs~d~~tG~isGtp--~~~~~~G~y~~~vtatd~~   48 (49)
T PF05345_consen   11 GLPSGLSLDPSTGTISGTP--TSSVQPGTYTFTVTATDGS   48 (49)
T ss_pred             CCCCcEEEeCCCCEEEeec--CCCccccEEEEEEEEEcCC
Confidence            5567889999999998663  333 335899999999975

Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.

>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)

Probab=84.45  E-value=14  Score=27.17  Aligned_cols=103  Identities=18%  Similarity=0.307  Sum_probs=53.7

Q ss_pred             CCEEEEEE-EEEeCCCCCcceeEEEEEEEEecCCCCCeeeC---Cc----------eEEEEEeecCCCCCCeEEEEEEcc
Q psy8618         122 RSIYRIAV-AATDNGFPSRQTVRLLRVEVLDLNDNRPTFTS---SS----------LLFKVSASDPDCGVNAMVNYTLGE  187 (232)
Q Consensus       122 ~~~~~l~v-~a~d~~~~~~~~~~~v~i~v~d~Nd~~P~f~~---~~----------~~~~v~~~D~d~~~~~~i~y~l~~  187 (232)
                      -+.|.+.+ .|.|..+..........+.|   ...+|.+.-   ..          ..+.|..+|..... ..-..+|.+
T Consensus        14 dG~Y~l~~~~a~D~agN~~~~~~~~~~~i---D~T~Ptisi~~~~~~~~g~~v~~~~~i~i~~tD~~~~~-~i~sv~l~G   89 (158)
T PF13750_consen   14 DGSYTLTVVTATDAAGNTSTSTVSETFTI---DNTPPTISISDGASVANGSTVYGLVNISINVTDNSDDS-KITSVSLTG   89 (158)
T ss_pred             CccEEEEEEEEEecCCCEEEEEEeeEEEE---cCCCCEEEEecCCccCCCccccceeeeEEEEEeCCCCc-eEEEEEEEC
Confidence            46799999 79997653322222222332   334777654   00          23344444444333 555777776


Q ss_pred             CCCCCCcEEE--E-CCceEEEEe--ecC-CCccccEEEEEEEEEECCc
Q psy8618         188 SPSRTNHFYM--K-SVSGEICIS--QDL-DFESRSSYEFPVVATDRGK  229 (232)
Q Consensus       188 ~~~~~~~f~i--~-~~~G~i~~~--~~l-d~e~~~~y~l~V~a~D~g~  229 (232)
                      ++ ....-.+  . ...|...+.  +.+ ..|....|.|.|.|.|...
T Consensus        90 g~-~~d~v~ls~~~~~~~~~~~~yp~~fpsle~~~~YtLtV~a~D~aG  136 (158)
T PF13750_consen   90 GP-ASDSVSLSWTNKGNGVYTLEYPRIFPSLEADDSYTLTVSATDKAG  136 (158)
T ss_pred             Cc-ccceEEEeeEeccCceEEeecccccCCcCCCCeEEEEEEEEecCC
Confidence            52 2222222  1 123333332  111 3367789999999999753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	232
2a62_A	322	Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length		7e-15
3q2v_A	550	Crystal Structure Of Mouse E-Cadherin Ectodomain Le		1e-12
3q2v_A	550	Crystal Structure Of Mouse E-Cadherin Ectodomain Le		8e-06
3q2w_A	559	Crystal Structure Of Mouse N-Cadherin Ectodomain Le		2e-12
3q2w_A	559	Crystal Structure Of Mouse N-Cadherin Ectodomain Le		7e-09
1edh_A	226	E-Cadherin Domains 1 And 2 In Complex With Calcium		7e-12
1edh_A	226	E-Cadherin Domains 1 And 2 In Complex With Calcium		1e-05
1l3w_A	546	C-Cadherin Ectodomain Length = 546		8e-12
1l3w_A	546	C-Cadherin Ectodomain Length = 546		7e-06
1q55_A	880	W-Shaped Trans Interactions Of Cadherins Model Base		1e-11
1q55_A	880	W-Shaped Trans Interactions Of Cadherins Model Base		1e-05
3mvs_A	210	Structure Of The N-Terminus Of Cadherin 23 Length =		1e-11
4aqe_A	214	Crystal Structure Of Deafness Associated Mutant Mou		2e-11
2wcp_A	214	Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length		2e-11
3ubh_A	419	Crystal Structure Of Drosophila N-Cadherin Ec1-4 Le		7e-11
3ubh_A	419	Crystal Structure Of Drosophila N-Cadherin Ec1-4 Le		3e-09
2wd0_A	214	Crystal Structure Of Nonsyndromic Deafness (Dfnb12)		9e-11
1ff5_A	219	Structure Of E-Cadherin Double Domain Length = 219		4e-10
1ff5_A	219	Structure Of E-Cadherin Double Domain Length = 219		1e-05
3ppe_A	203	Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Leng		4e-10
2a4e_A	215	Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length		2e-09
2a4e_A	215	Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length		7e-05
2o72_A	213	Crystal Structure Analysis Of Human E-Cadherin (1-2		4e-09
2o72_A	213	Crystal Structure Analysis Of Human E-Cadherin (1-2		8e-06
3k5s_A	217	Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Len		4e-09
3k5s_A	217	Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Len		2e-06
2qvi_A	215	Crystal Structure Of N-Cadherin Domains Ec12 Length		5e-09
2qvi_A	215	Crystal Structure Of N-Cadherin Domains Ec12 Length		5e-09
3lni_A	213	Crystal Structure Of E-Cadherin Ec12 E89a Length =		8e-09
3lni_A	213	Crystal Structure Of E-Cadherin Ec12 E89a Length =		2e-05
3lnd_A	207	Crystal Structure Of Cadherin-6 Ec12 W4a Length = 2		1e-08
3lnd_A	207	Crystal Structure Of Cadherin-6 Ec12 W4a Length = 2		1e-04
1q1p_A	212	E-Cadherin Activation Length = 212		1e-08
1q1p_A	212	E-Cadherin Activation Length = 212		1e-05
1ncj_A	215	N-Cadherin, Two-Domain Fragment Length = 215		1e-08
3lne_A	213	Crystal Structure Of E-Cadherin Ec12 K14e Length =		1e-08
3lne_A	213	Crystal Structure Of E-Cadherin Ec12 K14e Length =		1e-05
2qvf_B	213	Mouse E-cadherin Domains 1,2 Length = 213		1e-08
2qvf_B	213	Mouse E-cadherin Domains 1,2 Length = 213		1e-05
3qrb_A	213	Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Lengt		1e-08
3qrb_A	213	Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Lengt		1e-05
3q2l_A	213	Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213		1e-08
3q2l_A	213	Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213		3e-05
3lng_A	215	Crystal Structure Of E-Cadherin Ec12 Aa Extension L		1e-08
3lng_A	215	Crystal Structure Of E-Cadherin Ec12 Aa Extension L		1e-05
3lnh_A	213	Crystal Structure Of E-Cadherin Ec12 W2a Length = 2		1e-08
3lnh_A	213	Crystal Structure Of E-Cadherin Ec12 W2a Length = 2		1e-05
3lnf_A	213	Crystal Structure Of E-Cadherin Ec12 K14ew2a Length		1e-08
3lnf_A	213	Crystal Structure Of E-Cadherin Ec12 K14ew2a Length		1e-05
3q2n_A	213	Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213		2e-08
3q2n_A	213	Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213		1e-05
2ee0_A	114	Solution Structures Of The Ca Domain Of Human Proto		3e-07
2ee0_A	114	Solution Structures Of The Ca Domain Of Human Proto		4e-04
3k5r_A	218	Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Lengt		1e-05
1nch_A	110	Structural Basis Of Cell-Cell Adhesion By Cadherins		8e-05
1suh_A	146	Amino-Terminal Domain Of Epithelial Cadherin In The		1e-04
2yst_A	119	Solution Structure Of The Third Cadherin Domain Fro		3e-04
2yqg_A	123	Solution Structure Of The First Cadherin Domain Fro		3e-04

>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 115/243 (47%), Gaps = 31/243 (12%)
Query: 8   LDREARSSHELVAEARD-QGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPP 66
           LDRE ++ + L A+A D + + P        I V D+NDNAPE ++      +V E    
Sbjct: 63  LDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHA-TVPEMSIL 121
Query: 67  GTEVVRARAVDKDD---GSNATISYSILKGRDTDGYGVFTIDPISGVIRTK-SVLDHEDR 122
           GT V    A D DD   G++A + YSIL+G+       F+I+P + +I+T    +D E +
Sbjct: 122 GTSVTNVTATDADDPVYGNSAKLVYSILEGQP-----YFSIEPETAIIKTALPNMDREAK 176
Query: 123 SIYRIAVAATDNGFPS--RQTVRLLRVEVLDLNDNRPTFTSSSLLF-------------K 167
             Y + + A D G  S        L V + D+NDN P F  S   F             +
Sbjct: 177 EEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGR 236
Query: 168 VSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVS----GEICISQDLDFESRSSYEFPVV 223
           V A+D D G NA  +Y + +    T  F + S +    G I + + LDFE++ SY   V 
Sbjct: 237 VKANDQDIGENAQSSYDIIDG-DGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVE 295
Query: 224 ATD 226
           A +
Sbjct: 296 AAN 298

>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 107/251 (42%), Gaps = 48/251 (19%)
Query: 2   ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
           +   +PLDREA + + L + A           + + I+VTD NDN PE     ++V   S
Sbjct: 60  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
           V E   PGT V++  A D DD     NA I+Y+I+ +  +     +FT++  +GVI    
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 115 SVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSASDPD 174
           S LD E    Y + V A D       T     + V D+NDN P F  S+   +V    P+
Sbjct: 177 SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQV----PE 232
Query: 175 CGVNAMVN------------------YTLGESPSR---------TNHFYMKSVSGEICIS 207
             VNA +                   YT+   P +         TN   +K+  G     
Sbjct: 233 NEVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKG----- 287
Query: 208 QDLDFESRSSY 218
             LDFE++  Y
Sbjct: 288 --LDFEAKQQY 296

>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86  ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
           + YSI  +G D    GVF I+  +G ++    LD E  + Y + + A + NG      + 
Sbjct: 34  VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
           ++ + V D NDNRP FT                 + KVSA+D D  V   NA + YT+  
Sbjct: 94  IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
              E P + N F +   +G I  ++  LD ES  +Y   V A D   E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 199

>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain Length = 559

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 106/251 (42%), Gaps = 30/251 (11%)
Query: 2   ISTREPLDREARSSHELVAEARDQ-------GSPPRSSRVAVKISVTDVNDNAPELVDPQ 54
           ++  +P+D E      L   A +Q         PP+S+   V ++V DVN+N      P 
Sbjct: 285 VTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQST-ATVSVTVIDVNENP--YFAPN 341
Query: 55  EDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTK 114
             +I   E    GT +    A D D      I Y+ L    +D      IDP++G I T 
Sbjct: 342 PKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKL----SDPANWLKIDPVNGQITTI 397
Query: 115 SVLDHE----DRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF---------TS 161
           +VLD E      +IY     A+DNG P       L++ +LD+NDN P           T 
Sbjct: 398 AVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETP 457
Query: 162 SSLLFKVSASDPDCGVNA-MVNYTLGESP-SRTNHFYMKSVSGEIC-ISQDLDFESRSSY 218
                 ++A D D   NA    + L  SP +   ++ +  ++G+   ++  + F     Y
Sbjct: 458 EPNSINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIY 517
Query: 219 EFPVVATDRGK 229
           E P++ TD G 
Sbjct: 518 EVPIIITDSGN 528

>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain Length = 559

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 25/179 (13%)
Query: 69  EVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI 127
           E+VR R+ D+D   N ++ YS+   G D    G+F I+PISG +     LD E  + + +
Sbjct: 20  ELVRIRS-DRD--KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHL 76
Query: 128 AVAATD-NGFPSRQTVRLLRVEVLDLNDNRPTFTS-------------SSLLFKVSASDP 173
              A D NG      + ++ + V+D+NDNRP F                + +  V+A D 
Sbjct: 77  RAHAVDINGNQVENPIDIV-INVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDA 135
Query: 174 D--CGVNAMVNY-TLGESPS--RTNHFYMKSVSGEIC-ISQDLDFESRSSYEFPVVATD 226
           D    +N M+ Y  L ++PS    N F + + +G+I  ++  LD E    Y   + ATD
Sbjct: 136 DDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194

>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium Length = 226

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 80/168 (47%), Gaps = 10/168 (5%)
Query: 2   ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
           +   +PLDREA + + L + A           + + I+VTD NDN PE     ++V   S
Sbjct: 62  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 118
Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
           V E   PGT V++  A D DD     NA I+Y+I+ +  +     +FT++  +GVI    
Sbjct: 119 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 178
Query: 115 SVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS 162
           S LD E    Y + V A D       T     + V D+NDN P F  S
Sbjct: 179 SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPS 226

>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium Length = 226

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86  ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
           + YSI  +G D    GVF I+  +G ++    LD E  + Y + + A + NG      + 
Sbjct: 36  VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 95
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
           ++ + V D NDNRP FT                 + KVSA+D D  V   NA + YT+  
Sbjct: 96  IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 154
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
              E P + N F +   +G I  ++  LD ES  +Y   V A D   E
Sbjct: 155 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 201

>pdb|1L3W|A Chain A, C-Cadherin Ectodomain Length = 546

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Query: 7   PLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--SVREEQ 64
           PLDRE    + L + A  +   P    + + I+V D NDN P+     +DV   SVRE  
Sbjct: 71  PLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFT---QDVFRGSVREGV 127
Query: 65  PPGTEVVRARAVDKDDG---SNATISYSILKGRDTDGY-GVFTIDPISGVIR-TKSVLDH 119
            PGT+V+   A D+DD     N  +SYSILK    +    +FTI+  +GVI    + LD 
Sbjct: 128 QPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR 187
Query: 120 EDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF 159
           E    Y + V ATD             +++ D NDN P F
Sbjct: 188 EKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIF 227

>pdb|1L3W|A Chain A, C-Cadherin Ectodomain Length = 546

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 86  ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAV-AATDNGFPSRQTVR 143
           + YSI  +G D    GVF I+  +G +     LD E+   Y ++  A ++NG P  + + 
Sbjct: 40  VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPME 99
Query: 144 LLRVEVLDLNDNRPTFTS-------------SSLLFKVSASDPDCGV---NAMVNYT-LG 186
           +  + V+D NDNRP FT               + +  VSA+D D  +   N +++Y+ L 
Sbjct: 100 I-TINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILK 158
Query: 187 ESPSR--TNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATD 226
           + P     N F +   +G I  I   LD E    Y   V ATD
Sbjct: 159 QDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATD 201

>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Query: 7   PLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--SVREEQ 64
           PLDRE    + L + A  +   P    + + I+V D NDN P+     +DV   SVRE  
Sbjct: 220 PLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFT---QDVFRGSVREGV 276
Query: 65  PPGTEVVRARAVDKDDG---SNATISYSILKGRDTDGY-GVFTIDPISGVIR-TKSVLDH 119
            PGT+V+   A D+DD     N  +SYSILK    +    +FTI+  +GVI    + LD 
Sbjct: 277 QPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR 336
Query: 120 EDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF 159
           E    Y + V ATD             +++ D NDN P F
Sbjct: 337 EKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIF 376

>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 86  ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAV-AATDNGFPSRQTVR 143
           + YSI  +G D    GVF I+  +G +     LD E+   Y ++  A ++NG P  + + 
Sbjct: 189 VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPME 248
Query: 144 LLRVEVLDLNDNRPTFTS-------------SSLLFKVSASDPDCGV---NAMVNYT-LG 186
           +  + V+D NDNRP FT               + +  VSA+D D  +   N +++Y+ L 
Sbjct: 249 I-TINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILK 307
Query: 187 ESPSR--TNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATD 226
           + P     N F +   +G I  I   LD E    Y   V ATD
Sbjct: 308 QDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATD 350

>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23 Length = 210

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 25/185 (13%)
Query: 58  ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVL 117
           + + E+ P G+ V +  A D D   N  + + +  G +   +  F ++P +GV+  +  L
Sbjct: 17  LLISEDTPVGSSVTQLLARDMD---NDPLVFGV-SGEEASRF--FAVEPDTGVVWLRQPL 70
Query: 118 DHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSL------------- 164
           D E +S + +  + +D+        R + ++V D+NDN PTF +                
Sbjct: 71  DRETKSEFTVEFSVSDH---QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTP 127
Query: 165 LFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVA 224
           +F V+A+DPD G    V Y+  + PS    F + S  G + + Q+LD+E   +Y+  V A
Sbjct: 128 IFIVNATDPDLGAGGSVLYSF-QPPSP--FFAIDSARGIVTVIQELDYEVTQAYQLTVNA 184
Query: 225 TDRGK 229
           TD+ K
Sbjct: 185 TDQDK 189

>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I Length = 214

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 25/185 (13%)
Query: 58  ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVL 117
           + + E+ P G+ V +  A D D   N  + + +  G +   +  F ++P +GV+  +  L
Sbjct: 18  LLISEDTPVGSSVTQLLARDMD---NDPLVFGV-PGEEASRF--FAVEPDTGVVWLRQPL 71
Query: 118 DHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSL------------- 164
           D E +S + +  + +D+        R + ++V D+NDN PTF +                
Sbjct: 72  DRETKSEFTVEFSVSDH---QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTP 128
Query: 165 LFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVA 224
           +F V+A+DPD G    V Y+  + PS    F + S  G + + Q+LD+E   +Y+  V A
Sbjct: 129 IFIVNATDPDLGAGGSVLYSF-QPPSP--FFAIDSARGIVTVIQELDYEVTQAYQLTVNA 185
Query: 225 TDRGK 229
           TD+ K
Sbjct: 186 TDQDK 190

>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 25/185 (13%)
Query: 58  ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVL 117
           + + E+ P G+ V +  A D D   N  + + +  G +   +  F ++P +GV+  +  L
Sbjct: 18  LLISEDTPVGSSVTQLLARDMD---NDPLVFGV-SGEEASRF--FAVEPDTGVVWLRQPL 71
Query: 118 DHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSL------------- 164
           D E +S + +  + +D+        R + ++V D+NDN PTF +                
Sbjct: 72  DRETKSEFTVEFSVSDH---QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTP 128
Query: 165 LFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVA 224
           +F V+A+DPD G    V Y+  + PS    F + S  G + + Q+LD+E   +Y+  V A
Sbjct: 129 IFIVNATDPDLGAGGSVLYSF-QPPSP--FFAIDSARGIVTVIQELDYEVTQAYQLTVNA 185
Query: 225 TDRGK 229
           TD+ K
Sbjct: 186 TDQDK 190

>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4 Length = 419

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 31  SSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSI 90
           S+ V + I VTDVNDNAP+   P     +V E+ P GT ++R +A+D D GSNA I Y +
Sbjct: 305 STSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLV 364
Query: 91  LKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRV 147
                +D +  F +D    ++  K +    + + Y   V A D G P +  V  +RV
Sbjct: 365 -----SDDH--FAVDSNGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRV 414

>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4 Length = 419

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 31/153 (20%)
Query: 98  GYGVFTIDPISGVIRTKSVLDHEDR---SIYRIAVAATDN--GFPSRQTVRLLRVEVLDL 152
           G G F I P SG+++    LD ED     +Y + V AT++  GF    T   L + V D+
Sbjct: 261 GAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGF---STSVDLTIRVTDV 317
Query: 153 NDNRPTF---------------TSSSLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYM 197
           NDN P F                 +S+L +V A D D G NA + Y + +     +HF +
Sbjct: 318 NDNAPKFELPDYQAHNVDEDIPLGTSIL-RVKAMDSDSGSNAEIEYLVSD-----DHFAV 371
Query: 198 KSVSGEICISQDLDFESRSS-YEFPVVATDRGK 229
            S +G I  ++ LD ++ ++ YEF V A D+G+
Sbjct: 372 DS-NGIIVNNKQLDADNNNAYYEFIVTAKDKGE 403

>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12) Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 25/185 (13%)
Query: 58  ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVL 117
           + + E+ P G+ V +  A D D   N  + + +  G +   +  F ++P +GV+  +  L
Sbjct: 18  LLISEDTPVGSSVTQLLARDMD---NDPLVFGV-SGEEASRF--FAVEPDTGVVWLRQPL 71
Query: 118 DHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSL------------- 164
           D E +S + +  + +D+        R + ++V  +NDN PTF +                
Sbjct: 72  DRETKSEFTVEFSVSDH---QGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTP 128
Query: 165 LFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVA 224
           +F V+A+DPD G    V Y+  + PS    F + S  G + + Q+LD+E   +Y+  V A
Sbjct: 129 IFIVNATDPDLGAGGSVLYSF-QPPSP--FFAIDSARGIVTVIQELDYEVTQAYQLTVNA 185
Query: 225 TDRGK 229
           TD+ K
Sbjct: 186 TDQDK 190

>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain Length = 219

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 10/161 (6%)
Query: 2   ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
           +   +PLDREA + + L + A           + + I+VTD NDN PE     ++V   S
Sbjct: 61  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 117
Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
           V E   PGT V++  A D DD     NA I+Y+I+ +  +     +FT++  +GVI    
Sbjct: 118 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 177
Query: 115 SVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDN 155
           S LD E    Y + V A D       T     + V D+NDN
Sbjct: 178 SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDN 218

>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain Length = 219

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86  ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
           + YSI  +G D    GVF I+  +G ++    LD E  + Y + + A + NG      + 
Sbjct: 35  VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 94
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
           ++ + V D NDNRP FT                 + KVSA+D D  V   NA + YT+  
Sbjct: 95  IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 153
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
              E P + N F +   +G I  ++  LD ES  +Y   V A D   E
Sbjct: 154 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 200

>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Length = 203

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 20/142 (14%)
Query: 1   EISTREPLDREARSSHELVAEARDQGS-----PPRSSRVAVKISVTDVNDNAPELVDPQE 55
           +I   E LDRE ++ +EL A   D+ +     PP  S+  +K+S  D+NDNAP  V    
Sbjct: 54  DIYAFERLDREKKAEYELTAHIIDRRNNRSLEPP--SKFIIKVS--DINDNAPIFVQKIF 109
Query: 56  DVISVREEQPPGTEVVRARAVDKDD---GSNATISYSILKGRDTDGYGVFTIDPISGVIR 112
           +  SV E    GT V +  A D DD     +AT++Y I+KG +      FT+D  SGVI 
Sbjct: 110 NG-SVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE-----YFTVDD-SGVIF 162
Query: 113 T-KSVLDHEDRSIYRIAVAATD 133
           T ++ LD E +S Y I V A D
Sbjct: 163 TARADLDRESQSAYEIIVKAKD 184

>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length = 215

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 17/142 (11%)
Query: 2   ISTREPLDREARSSHELVAEA--RDQGSP--PRSSRVAVKISVTDVNDNAPELVDPQEDV 57
           I   + LDRE R+ + L+A+A  RD   P  P S  +   + V D+NDN PE +      
Sbjct: 58  IHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFI---VKVQDINDNPPEFLHEIYHA 114
Query: 58  ISVREEQPPGTEVVRARAVDKDD---GSNATISYSILKGRDTDGYGVFTIDPISGVIRTK 114
            +V E    GT V++  A D DD   G++A + YSIL+G+       F+++  +G+IRT 
Sbjct: 115 -NVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQP-----YFSVEAQTGIIRTA 168
Query: 115 -SVLDHEDRSIYRIAVAATDNG 135
              +D E +  Y + + A D G
Sbjct: 169 LPNMDREAKEEYHVVIQAKDMG 190

>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length = 215

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 36/173 (20%)
Query: 80  DGSNATISYSILKGRDTDGYG-VFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPS 138
           D  +  I Y IL G   +G G +F ID  SG I     LD E+R+ Y +   A D     
Sbjct: 30  DSGDGNIKY-ILSG---EGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVD----- 80
Query: 139 RQTVRLLR------VEVLDLNDNRPTFTS-------------SSLLFKVSAS---DPDCG 176
           R T R L       V+V D+NDN P F                + + +V+AS   DP  G
Sbjct: 81  RDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYG 140
Query: 177 VNAMVNYTLGESPSRTNHFYMKSVSGEICISQ-DLDFESRSSYEFPVVATDRG 228
            +A + Y++ E      +F +++ +G I  +  ++D E++  Y   + A D G
Sbjct: 141 NSAKLVYSILEGQP---YFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMG 190

>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213) Length = 213

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 68/139 (48%), Gaps = 10/139 (7%)
Query: 2   ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
           +   EPLDRE  +++ L + A           + + I+VTD NDN PE     ++V   S
Sbjct: 60  LKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFT---QEVFKGS 116
Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKS 115
           V E   PGT V+   A D DD     NA I+Y+IL +  +     +FTI+  +GVI   +
Sbjct: 117 VMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVVT 176
Query: 116 V-LDHEDRSIYRIAVAATD 133
             LD E    Y + V A D
Sbjct: 177 TGLDRESFPTYTLVVQAAD 195

>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213) Length = 213

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 25/168 (14%)
Query: 86  ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
           + YSI  +G DT   GVF I+  +G ++    LD E  + Y + + A + NG      + 
Sbjct: 34  VFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
           +L + V D NDN+P FT                 + +V+A+D D  V   NA + YT+  
Sbjct: 94  IL-ITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILS 152
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
              E P + N F +   +G I  ++  LD ES  +Y   V A D   E
Sbjct: 153 QDPELPDK-NMFTINRNTGVISVVTTGLDRESFPTYTLVVQAADLQGE 199

>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Length = 217

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 68/143 (47%), Gaps = 9/143 (6%)
Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
           ++S   PLDREA ++++L  E  D         V + ISV D NDN P +      V  V
Sbjct: 58  DVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRP-MFKEGPYVGHV 116
Query: 61  REEQPPGTEVVRARAVDKDDGS--NATISYSILKGRDTD-GYGVFTIDPISGVIRT---K 114
            E  P GT V+R  A D DD S  NA + Y+ILK   T     +F IDP  G I T    
Sbjct: 117 MEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDPEKGDIVTVVSP 176
Query: 115 SVLDHEDRSI--YRIAVAATDNG 135
            +LD E      Y + + A D G
Sbjct: 177 VLLDRETMETPKYELVIEAKDMG 199

>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Length = 217

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 25/161 (15%)
Query: 92  KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD-NGFPSRQTVRLLRVEVL 150
           KG D D  G+F I+ ISG +     LD E  + Y++ V  TD +G      VR L + V+
Sbjct: 40  KGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVR-LDISVI 98
Query: 151 DLNDNRPTFT-------------SSSLLFKVSASDPD--CGVNAMVNYT-LGESPSR--T 192
           D NDNRP F              + + + +++A D D     NA++ Y  L ++P++   
Sbjct: 99  DQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSP 158
Query: 193 NHFYMKSVSGEIC-----ISQDLDFESRSSYEFPVVATDRG 228
           N FY+    G+I      +  D +      YE  + A D G
Sbjct: 159 NMFYIDPEKGDIVTVVSPVLLDRETMETPKYELVIEAKDMG 199

>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12 Length = 215

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
           ++S  +PLDRE  +   L A A D       + + + I+V D+NDN PE +  Q    SV
Sbjct: 59  QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLH-QVWNGSV 117
Query: 61  REEQPPGTEVVRARAVDKDDGS--NATISYSIL-KGRDTDGYGVFTIDPISG-VIRTKSV 116
            E   PGT V+   A+D DD +  N  + Y IL +   T    +FTI+  +G +I   + 
Sbjct: 118 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAG 177
Query: 117 LDHEDRSIYRIAVAATD 133
           LD E    Y + + ATD
Sbjct: 178 LDREKVQQYTLIIQATD 194

>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12 Length = 215

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 25/179 (13%)
Query: 69  EVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI 127
           E+VR R+ D+D   N ++ YS+   G D    G+F I+PISG +     LD E  + + +
Sbjct: 20  ELVRIRS-DRD--KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHL 76
Query: 128 AVAATD-NGFPSRQTVRLLRVEVLDLNDNRPTFTS-------------SSLLFKVSASDP 173
              A D NG      + ++ + V+D+NDNRP F                + +  V+A D 
Sbjct: 77  RAHAVDINGNQVENPIDIV-INVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDA 135
Query: 174 D--CGVNAMVNY-TLGESPS--RTNHFYMKSVSGEIC-ISQDLDFESRSSYEFPVVATD 226
           D    +N M+ Y  L ++PS    N F + + +G+I  ++  LD E    Y   + ATD
Sbjct: 136 DDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194

>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a Length = 213

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 10/139 (7%)
Query: 2   ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
           +   +PLDREA + + L + A        +  + + I+VTD NDN PE     ++V   S
Sbjct: 60  LKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
           V E   PGT V++  A D DD     NA I+Y+I+ +  +     +FT++  +GVI    
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 115 SVLDHEDRSIYRIAVAATD 133
           S LD E    Y + V A D
Sbjct: 177 SGLDRESYPTYTLVVQAAD 195

>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a Length = 213

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86  ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
           + YSI  +G D    GVF I+  +G ++    LD E  + Y + + A + NG      + 
Sbjct: 34  VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
           ++ + V D NDNRP FT                 + KVSA+D D  V   NA + YT+  
Sbjct: 94  IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
              E P + N F +   +G I  ++  LD ES  +Y   V A D   E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 199

>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a Length = 207

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 21/145 (14%)
Query: 1   EISTREPLDREARSSHELVAEA--RDQGSP--PRSSRVAVKISVTDVNDNAPELVDPQED 56
           +I   + LDRE +  + L A+A  R  G P  P S  +   I + D+NDN P      +D
Sbjct: 56  DIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFI---IKIHDINDNEPIFT---KD 109
Query: 57  VIS--VREEQPPGTEVVRARAVDKDD---GSNATISYSILKGRDTDGYGVFTIDPISGVI 111
           V +  V E    GT VV+  A D DD   G++A + YSIL+G+       F+++  +G+I
Sbjct: 110 VYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQP-----YFSVESETGII 164
Query: 112 RTKSV-LDHEDRSIYRIAVAATDNG 135
           +T  + +D E+R  Y++ + A D G
Sbjct: 165 KTALLNMDRENREQYQVVIQAKDMG 189

>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a Length = 207

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 31/174 (17%)
Query: 77  DKDDGSNATISYSILKGRDTDGYG-VFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD-- 133
           D+ DGS   + Y IL G   DG G +F I+  +G I+    LD E++ +Y +   A +  
Sbjct: 29  DRGDGS---LKY-ILSG---DGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRR 81
Query: 134 NGFPSRQTVRLLRVEVLDLNDNRPTFTS-------------SSLLFKVSAS---DPDCGV 177
            G P       + +++ D+NDN P FT               + + +V+A+   DP  G 
Sbjct: 82  TGRPVEPESEFI-IKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGN 140
Query: 178 NAMVNYTLGESPSRTNHFYMKSVSGEICIS-QDLDFESRSSYEFPVVATDRGKE 230
           +A V Y++ +      +F ++S +G I  +  ++D E+R  Y+  + A D G +
Sbjct: 141 SAKVVYSILQGQP---YFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQ 191

>pdb|1Q1P|A Chain A, E-Cadherin Activation Length = 212

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2   ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
           +   +PLDREA + + L + A           + + I+VTD NDN PE     ++V   S
Sbjct: 59  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 115
Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
           V E   PGT V++  A D DD     NA I+Y+I+ +  +     +FT++  +GVI    
Sbjct: 116 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 175
Query: 115 SVLDHEDRSIYRIAVAATD 133
           S LD E    Y + V A D
Sbjct: 176 SGLDRESYPTYTLVVQAAD 194

>pdb|1Q1P|A Chain A, E-Cadherin Activation Length = 212

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86  ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
           + YSI  +G D    GVF I+  +G ++    LD E  + Y + + A + NG      + 
Sbjct: 33  VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 92
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
           ++ + V D NDNRP FT                 + KVSA+D D  V   NA + YT+  
Sbjct: 93  IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 151
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
              E P + N F +   +G I  ++  LD ES  +Y   V A D   E
Sbjct: 152 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 198

>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment Length = 215

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 25/179 (13%)
Query: 69  EVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI 127
           E+VR R+ D+D   N ++ YS+   G D    G+F I+PISG +     LD E  + + +
Sbjct: 20  ELVRIRS-DRD--KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHL 76
Query: 128 AVAATD-NGFPSRQTVRLLRVEVLDLNDNRPTFTS-------------SSLLFKVSASDP 173
              A D NG      + ++ + V+D+NDNRP F                + +  V+A D 
Sbjct: 77  RAHAVDINGNQVENPIDIV-INVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDA 135
Query: 174 D--CGVNAMVNY-TLGESPS--RTNHFYMKSVSGEIC-ISQDLDFESRSSYEFPVVATD 226
           D    +N M+ Y  + ++PS    N F + + +G+I  ++  LD E    Y   + ATD
Sbjct: 136 DDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194

>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e Length = 213

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2   ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
           +   +PLDREA + + L + A           + + I+VTD NDN PE     ++V   S
Sbjct: 60  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
           V E   PGT V++  A D DD     NA I+Y+I+ +  +     +FT++  +GVI    
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 115 SVLDHEDRSIYRIAVAATD 133
           S LD E    Y + V A D
Sbjct: 177 SGLDRESYPTYTLVVQAAD 195

>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e Length = 213

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86  ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
           + YSI  +G D    GVF I+  +G ++    LD E  + Y + + A + NG      + 
Sbjct: 34  VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
           ++ + V D NDNRP FT                 + KVSA+D D  V   NA + YT+  
Sbjct: 94  IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
              E P + N F +   +G I  ++  LD ES  +Y   V A D   E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 199

>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2 Length = 213

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2   ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
           +   +PLDREA + + L + A           + + I+VTD NDN PE     ++V   S
Sbjct: 60  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
           V E   PGT V++  A D DD     NA I+Y+I+ +  +     +FT++  +GVI    
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 115 SVLDHEDRSIYRIAVAATD 133
           S LD E    Y + V A D
Sbjct: 177 SGLDRESYPTYTLVVQAAD 195

>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2 Length = 213

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86  ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
           + YSI  +G D    GVF I+  +G ++    LD E  + Y + + A + NG      + 
Sbjct: 34  VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
           ++ + V D NDNRP FT                 + KVSA+D D  V   NA + YT+  
Sbjct: 94  IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
              E P + N F +   +G I  ++  LD ES  +Y   V A D   E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 199

>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Length = 213

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2   ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
           +   +PLDREA + + L + A           + + I+VTD NDN PE     ++V   S
Sbjct: 60  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
           V E   PGT V++  A D DD     NA I+Y+I+ +  +     +FT++  +GVI    
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 115 SVLDHEDRSIYRIAVAATD 133
           S LD E    Y + V A D
Sbjct: 177 SGLDRESYPTYTLVVQAAD 195

>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Length = 213

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86  ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
           + YSI  +G D    GVF I+  +G ++    LD E  + Y + + A + NG      + 
Sbjct: 34  VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
           ++ + V D NDNRP FT                 + KVSA+D D  V   NA + YT+  
Sbjct: 94  IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
              E P + N F +   +G I  ++  LD ES  +Y   V A D   E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 199

>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2   ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
           +   +PLDREA + + L + A           + + I+VTD NDN PE     ++V   S
Sbjct: 60  LKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
           V E   PGT V++  A D DD     NA I+Y+I+ +  +     +FT++  +GVI    
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 115 SVLDHEDRSIYRIAVAATD 133
           S LD E    Y + V A D
Sbjct: 177 SGLDRESYPTYTLVVQAAD 195

>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86  ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
           + YSI  +G D    GVF I+  +G ++    LD E  + Y + + A + NG      + 
Sbjct: 34  VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
           ++ + V D NDNRP FT                 + KVSA+D D  V   NA + YT+  
Sbjct: 94  IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
              E P + N F +   +G I  ++  LD ES  +Y   V A D   E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 199

>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension Length = 215

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2   ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
           +   +PLDREA + + L + A           + + I+VTD NDN PE     ++V   S
Sbjct: 62  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 118
Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
           V E   PGT V++  A D DD     NA I+Y+I+ +  +     +FT++  +GVI    
Sbjct: 119 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 178
Query: 115 SVLDHEDRSIYRIAVAATD 133
           S LD E    Y + V A D
Sbjct: 179 SGLDRESYPTYTLVVQAAD 197

>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension Length = 215

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86  ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
           + YSI  +G D    GVF I+  +G ++    LD E  + Y + + A + NG      + 
Sbjct: 36  VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 95
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
           ++ + V D NDNRP FT                 + KVSA+D D  V   NA + YT+  
Sbjct: 96  IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 154
Query: 186 --GESPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPVVATDRGKE 230
              E P + N F +   +G I  ++  LD ES  +Y   V A D   E
Sbjct: 155 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 201

>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a Length = 213

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2   ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
           +   +PLDREA + + L + A           + + I+VTD NDN PE     ++V   S
Sbjct: 60  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
           V E   PGT V++  A D DD     NA I+Y+I+ +  +     +FT++  +GVI    
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 115 SVLDHEDRSIYRIAVAATD 133
           S LD E    Y + V A D
Sbjct: 177 SGLDRESYPTYTLVVQAAD 195

>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a Length = 213

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86  ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
           + YSI  +G D    GVF I+  +G ++    LD E  + Y + + A + NG      + 
Sbjct: 34  VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
           ++ + V D NDNRP FT                 + KVSA+D D  V   NA + YT+  
Sbjct: 94  IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEICI-SQDLDFESRSSYEFPVVATDRGKE 230
              E P + N F +   +G I + +  LD ES  +Y   V A D   E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 199

>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a Length = 213

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2   ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
           +   +PLDREA + + L + A           + + I+VTD NDN PE     ++V   S
Sbjct: 60  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
           V E   PGT V++  A D DD     NA I+Y+I+ +  +     +FT++  +GVI    
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 115 SVLDHEDRSIYRIAVAATD 133
           S LD E    Y + V A D
Sbjct: 177 SGLDRESYPTYTLVVQAAD 195

>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a Length = 213

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86  ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
           + YSI  +G D    GVF I+  +G ++    LD E  + Y + + A + NG      + 
Sbjct: 34  VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
           ++ + V D NDNRP FT                 + KVSA+D D  V   NA + YT+  
Sbjct: 94  IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEICI-SQDLDFESRSSYEFPVVATDRGKE 230
              E P + N F +   +G I + +  LD ES  +Y   V A D   E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE 199

>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 2   ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
           +   +PLDREA + + L + A           + + I+VTD NDN PE     ++V   S
Sbjct: 60  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 116
Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSIL-KGRDTDGYGVFTIDPISGVIRT-K 114
           V E   PGT V++  A D DD     NA I+Y+I+ +  +     +FT++  +GVI    
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVDT 176
Query: 115 SVLDHEDRSIYRIAVAATD 133
           S LD E    Y + V A D
Sbjct: 177 SGLDRESYPTYTLVVQAAD 195

>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 86  ISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI-AVAATDNGFPSRQTVR 143
           + YSI  +G D    GVF I+  +G ++    LD E  + Y + + A + NG      + 
Sbjct: 34  VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 144 LLRVEVLDLNDNRPTFTSSSL-------------LFKVSASDPDCGV---NAMVNYTL-- 185
           ++ + V D NDNRP FT                 + KVSA+D D  V   NA + YT+  
Sbjct: 94  IV-ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 186 --GESPSRTNHFYMKSVSGEICI-SQDLDFESRSSYEFPVVATDRGKE 230
              E P + N F +   +G I + +  LD ES  +Y   V A D   E
Sbjct: 153 QDPELPHK-NMFTVNRDTGVISVDTSGLDRESYPTYTLVVQAADLQGE 199

>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human Protocadherin 9 Length = 114

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 44  NDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFT 103
           NDN P   + Q +V  + E  P GT V++  A D D GSNA I Y            +F 
Sbjct: 8   NDNRPVFKEGQVEV-HIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFA 66
Query: 104 IDPISGVIRTKSVLDHEDRSIYRIAVAATD-NGFPSRQTVRLLRVEVLDLN 153
           ++  +G+I  +  LD E+ +I+++ V A+D +  P+R TV    + V D+N
Sbjct: 67  LNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATV---TINVTDVN 114

>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human Protocadherin 9 Length = 114

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 153 NDNRPTFTSSSL-------------LFKVSASDPDCGVNAMVNYTLGE--SPSRTNHFYM 197
           NDNRP F    +             + ++ A+D D G NA + Y  G   +P+    F +
Sbjct: 8   NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 198 KSVSGEICISQDLDFESRSSYEFPVVATD 226
            + +G I + + LD E  + ++  V+A+D
Sbjct: 68  NNTTGLITVQRSLDREETAIHKVTVLASD 96

>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Length = 218

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 21/183 (11%)
Query: 57  VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
           +I   + QP   +V +    D+ +GS   ++    KG D D  G F I+  +G +     
Sbjct: 9   LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTG---KGVDQDPKGTFRINENTGSVSVTRT 65
Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF-------------TSSS 163
           LD E  + Y++ V  TD    + +    L V V+D NDNRP F              + +
Sbjct: 66  LDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGT 125
Query: 164 LLFKVSASDPD--CGVNAMVNYTL-GESPSR--TNHFYMKSVSGEICISQDLDFESRSSY 218
            + +++A D D     NA++ Y +  ++P +   N FY+    G+I          R + 
Sbjct: 126 TVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETL 185
Query: 219 EFP 221
           E P
Sbjct: 186 ENP 188

>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins Length = 110

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 69  EVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRI 127
           E+VR R+  +D   N ++ YS+   G D    G+F I+PISG +     LD E  + + +
Sbjct: 22  ELVRIRS-GRD--KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHL 78
Query: 128 AVAATD-NGFPSRQTVRLLRVEVLDLNDNRPTF 159
              A D NG      + ++ + V+D+NDNRP F
Sbjct: 79  RAHAVDINGNQVENPIDIV-INVIDMNDNRPEF 110

>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The Calcium Bound State, Nmr, 20 Structures Length = 146

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 2   ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI--S 59
           +   +PLDREA + + L + A           + + I+VTD NDN PE     ++V   S
Sbjct: 62  LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGS 118
Query: 60  VREEQPPGTEVVRARAVDKDDGSN 83
           V E   PGT V++  A D DD  N
Sbjct: 119 VAEGAVPGTSVMKVSATDADDDVN 142

>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human Protocadherin 7 Length = 119

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 44  NDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYG-VF 102
           NDN+P       +   + E   PGT +++ RA D D G N  I Y    G  T+    + 
Sbjct: 8   NDNSPRFEKSVYEA-DLAENSAPGTPILQLRAADLDVGVNGQIEYVF--GAATESVRRLL 64
Query: 103 TIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRP 157
            +D  SG +     +D E+ +  R  V A D G P +     + + + D NDN P
Sbjct: 65  RLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119

>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human Desmoglein-2 Length = 123

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 99  YGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPT 158
           +G+F  +  +G +   S+LD E+   + +   A D    + +    LR++VLD+NDN P 
Sbjct: 60  FGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPV 119
Query: 159 FT 160
           FT
Sbjct: 120 FT 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	1e-58
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	9e-36
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	1e-04
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	1e-57
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	2e-38
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	3e-33
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	7e-11
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	9e-57
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	5e-54
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	7e-49
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	3e-37
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	2e-36
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	8e-08
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	1e-56
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	2e-52
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	7e-40
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	5e-34
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	2e-54
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	3e-51
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	2e-49
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	5e-41
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	1e-38
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	1e-08
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	1e-53
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	2e-52
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	1e-49
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	3e-36
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	2e-33
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	2e-06
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	3e-52
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	1e-49
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	4e-42
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	4e-31
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	4e-28
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	1e-06
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	4e-50
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	1e-45
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	2e-44
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	1e-37
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	2e-13
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	2e-43
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	2e-42
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	1e-42
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	6e-41
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	5e-41
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	7e-34
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	9e-15
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	1e-40
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	3e-37
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	2e-39
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	9e-38
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	3e-39
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	1e-38
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	2e-34
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	4e-23
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	3e-15
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	4e-31
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	2e-16
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	7e-11
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	2e-30
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	3e-22
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	3e-09
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	5e-30
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	2e-15
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	2e-08
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	3e-22
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	1e-11
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	6e-09
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	5e-22
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	2e-11
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	8e-09
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	2e-21
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	3e-09
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	8e-08
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	1e-19
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	8e-10
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	2e-08
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	2e-17
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	9e-10
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	7e-08
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	3e-16
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	5e-08
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	3e-07

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  186 bits (475), Expect = 1e-58
 Identities = 75/256 (29%), Positives = 117/256 (45%), Gaps = 31/256 (12%)

Query: 1   EISTREPLDREARSSHELVAEARDQ-GSPPRSSRVAVKISVTDVNDNAPELVDPQEDVIS 59
           +I   + LDRE ++ + L A+A D   + P        I V D+NDNAPE ++      +
Sbjct: 56  DIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLN-GPYHAT 114

Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSILKGRDTDGYGVFTIDPISGVIRT-KS 115
           V E    GT V    A D DD   G++A + YSIL+G+       F+I+P + +I+T   
Sbjct: 115 VPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQP-----YFSIEPETAIIKTALP 169

Query: 116 VLDHEDRSIYRIAVAATDNG--FPSRQTVRLLRVEVLDLNDNRPTFTSSS---------- 163
            +D E +  Y + + A D G           L V + D+NDN P F  S           
Sbjct: 170 NMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVV 229

Query: 164 ---LLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYM----KSVSGEICISQDLDFESRS 216
               + +V A+D D G NA  +Y +      T  F +    ++  G I + + LDFE++ 
Sbjct: 230 LGTAIGRVKANDQDIGENAQSSYDI-IDGDGTALFEITSDAQAQDGVIRLRKPLDFETKK 288

Query: 217 SYEFPVVATDRGKETQ 232
           SY   V A +   + +
Sbjct: 289 SYTLKVEAANIHIDPR 304

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  127 bits (322), Expect = 9e-36
 Identities = 42/193 (21%), Positives = 75/193 (38%), Gaps = 25/193 (12%)

Query: 57  VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
           +  + E   P   +V     D D G +  I Y +  G       +F I+ I+G I     
Sbjct: 7   MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYIL-SGDGAGT--IFQINDITGDIHAIKR 62

Query: 117 LDHEDRSIYRIAVAATD-NGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLF--------- 166
           LD E+++ Y +   A D       +      ++V D+NDN P F +              
Sbjct: 63  LDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILG 122

Query: 167 ----KVSASDPD---CGVNAMVNYTLGESPSRTNHFYMKSVSGEI-CISQDLDFESRSSY 218
                V+A+D D    G +A + Y++        +F ++  +  I     ++D E++  Y
Sbjct: 123 TSVTNVTATDADDPVYGNSAKLVYSI---LEGQPYFSIEPETAIIKTALPNMDREAKEEY 179

Query: 219 EFPVVATDRGKET 231
              + A D G  +
Sbjct: 180 LVVIQAKDMGGHS 192

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 7/46 (15%)

Query: 2   ISTREPLDREARSSHELVAEARDQGSPPR-------SSRVAVKISV 40
           I  R+PLD E + S+ L  EA +    PR            VKI V
Sbjct: 276 IRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  184 bits (468), Expect = 1e-57
 Identities = 54/255 (21%), Positives = 85/255 (33%), Gaps = 36/255 (14%)

Query: 1   EISTREPLDREARSSH------ELVAEARDQGSPPRSSRVAVKISVTDVNDNAPE-LVDP 53
            +  ++  D E            ++           +    V I V DVND  P  +  P
Sbjct: 51  AVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRP 110

Query: 54  QEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRT 113
                 V+   PP T V   +A D D   N    Y I++       G F +D  SGV+RT
Sbjct: 111 LPMQAVVQLNAPPNTPVFTLQARDPDTDHNIH--YFIVRD---RTGGRFEVDERSGVVRT 165

Query: 114 KSVLDHEDRSIYRIAVAATDNGFPSR----QTVRLLRVEVLDLNDNRPTFTSS------- 162
           +     +    Y + V A D          Q+    R+ ++      P F          
Sbjct: 166 RGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIP 224

Query: 163 ------SLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRS 216
                 S +  + A       +  + YTL         F +   SG + ++++LDFE   
Sbjct: 225 ENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLR 281

Query: 217 S---YEFPVVATDRG 228
               Y   V AT+  
Sbjct: 282 QPHVYSLIVTATEDS 296

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  134 bits (340), Expect = 2e-38
 Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 15/162 (9%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPR----SSRVAVKISVTDVNDNAPELVDPQED 56
            + TR     +    + L  +A DQ          S    ++S+      AP+   P  +
Sbjct: 162 VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYE 220

Query: 57  VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
              + E Q   ++++  +A       +  I Y++       G G F I P SG+++    
Sbjct: 221 A-EIPENQKKDSDIISIKAKSFA---DREIRYTLK--AQGQGAGTFNIGPTSGIVKLAKE 274

Query: 117 LDHEDRS---IYRIAVAATDNGFPSRQTVRLLRVEVLDLNDN 155
           LD ED     +Y + V AT++      T   L + V D+NDN
Sbjct: 275 LDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDN 315

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  120 bits (304), Expect = 3e-33
 Identities = 31/189 (16%), Positives = 56/189 (29%), Gaps = 29/189 (15%)

Query: 66  PGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGV-----FTIDPISGVIRTKSVLDHE 120
                 R    + D  +     + + K  D + + +     +     +G +R K   D+E
Sbjct: 2   AVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYE 61

Query: 121 DRS------IYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFK------- 167
           +         + I      N        + + + V D+ND  P F +  L  +       
Sbjct: 62  ELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNA 121

Query: 168 --------VSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYE 219
                   + A DPD   N         +      F +   SG +       F+    Y 
Sbjct: 122 PPNTPVFTLQARDPDTDHNIHYFIVRDRTG---GRFEVDERSGVVRTRGTDLFQLDMEYV 178

Query: 220 FPVVATDRG 228
             V A D+ 
Sbjct: 179 LYVKAEDQN 187

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score = 59.7 bits (145), Expect = 7e-11
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 1   EISTREPLDREARSS---HELVAEARDQGSPPRSSRVAVKISVTDVNDNA 47
            +   + LD E       + L+  A +      S+ V + I VTDVNDNA
Sbjct: 268 IVKLAKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDNA 316

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  187 bits (478), Expect = 9e-57
 Identities = 69/251 (27%), Positives = 102/251 (40%), Gaps = 26/251 (10%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
            +   +PLDREA + + L + A           + + I+VTD NDN PE         SV
Sbjct: 59  WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQE-VFEGSV 117

Query: 61  REEQPPGTEVVRARAVDKDDG---SNATISYSILKGR-DTDGYGVFTIDPISGVIRT-KS 115
            E   PGT V++  A D DD     NA I+Y+I+    +     +FT++  +GVI    S
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177

Query: 116 VLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVS------ 169
            LD E    Y + V A D       T     + V D+NDN P F  S+   +V       
Sbjct: 178 GLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEVNA 237

Query: 170 ------ASDPDCGVNAM--VNYTLGESPSRTNHFYM----KSVSGEICISQDLDFESRSS 217
                  +D D          YT+   P     F +     +  G +  ++ LDFE++  
Sbjct: 238 RIATLKVTDDDAPNTPAWKAVYTVVNDPD--QQFVVVTDPTTNDGILKTAKGLDFEAKQQ 295

Query: 218 YEFPVVATDRG 228
           Y   V   +  
Sbjct: 296 YILHVRVENEE 306

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  180 bits (459), Expect = 5e-54
 Identities = 62/244 (25%), Positives = 95/244 (38%), Gaps = 23/244 (9%)

Query: 2   ISTREPLDREARSSHELVAEARDQG---SPPRSSRVAVKISVTDVNDNAPELVDPQEDVI 58
           + T + LD EA+  + L     ++         S   V + V DVN+ AP  + P E  +
Sbjct: 282 LKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFM-PAERRV 339

Query: 59  SVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLD 118
            V E+   G E+    A + D   +  I+Y I   RDT  +    I+P +G I T++ +D
Sbjct: 340 EVPEDFGVGQEITSYTAREPDTFMDQKITYRIW--RDTANW--LEINPETGAIFTRAEMD 395

Query: 119 HED-----RSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLF------- 166
            ED      S Y   + ATD+G P       L + +LD+NDN P     ++ F       
Sbjct: 396 REDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQP 455

Query: 167 -KVSASDPDCGVNAM-VNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVA 224
             ++  DPD   N       L    S          + E  I Q         Y+  +  
Sbjct: 456 HIITILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKL 515

Query: 225 TDRG 228
            D  
Sbjct: 516 ADNQ 519

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  167 bits (424), Expect = 7e-49
 Identities = 57/256 (22%), Positives = 101/256 (39%), Gaps = 37/256 (14%)

Query: 1   EIST-REPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVIS 59
            IS     LDRE+  ++ LV +A D      S+     I+V D+NDNAP   +P      
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPV-FNPSTYQGQ 229

Query: 60  VREEQPPGTEVVRARAVDKDDGSNA--TISYSILKGRDTDGYGVFTI--DPIS--GVIRT 113
           V  E      +   +  D D  +       Y+++   D      F +  DP +  G+++T
Sbjct: 230 V-PENEVNARIATLKVTDDDAPNTPAWKAVYTVVNDPD----QQFVVVTDPTTNDGILKT 284

Query: 114 KSVLDHEDRSIYRIAVAATDNGF---PSRQTVRLLRVEVLDLNDNRPTFTSSS------- 163
              LD E +  Y + V   +          +   + V+V+D+N+  P F  +        
Sbjct: 285 AKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEA-PIFMPAERRVEVPE 343

Query: 164 ------LLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFES--- 214
                  +   +A +PD  ++  + Y +    +  N   +   +G I    ++D E    
Sbjct: 344 DFGVGQEITSYTAREPDTFMDQKITYRIWRDTA--NWLEINPETGAIFTRAEMDREDAEH 401

Query: 215 --RSSYEFPVVATDRG 228
              S+Y   ++ATD G
Sbjct: 402 VKNSTYVALIIATDDG 417

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  135 bits (342), Expect = 3e-37
 Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 22/192 (11%)

Query: 58  ISVREEQPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSV 116
           IS  E +  G        +  +      + YSI  +G D    GVF I+  +G ++    
Sbjct: 7   ISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65

Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS-------------S 163
           LD E  + Y +   A  +   + +    + + V D NDNRP FT               +
Sbjct: 66  LDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGT 125

Query: 164 LLFKVSASDPDCGV---NAMVNYTLGE---SPSRTNHFYMKSVSGEICI-SQDLDFESRS 216
            + KVSA+D D  V   NA + YT+          N F +   +G I + +  LD ES  
Sbjct: 126 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 185

Query: 217 SYEFPVVATDRG 228
           +Y   V A D  
Sbjct: 186 TYTLVVQAADLQ 197

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  133 bits (337), Expect = 2e-36
 Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 16/169 (9%)

Query: 1   EISTREPLDREA-----RSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQE 55
            I TR  +DRE       S++  +  A D GSP  +    + + + DVNDNAP       
Sbjct: 387 AIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRN- 445

Query: 56  DVISVREEQPPGTEVVRARAVDKDDGSNAT-ISYSILKGRDTDGYGVFTIDPISGVIRTK 114
             +   +  P    +     +D D   N +  +  +  G           +  +      
Sbjct: 446 --MQFCQRNPQPHIIT---ILDPDLPPNTSPFTAELTHG--ASVNWTIEYNDAAQESLIL 498

Query: 115 SVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSS 163
                 +   Y+I +   DN    + T   L V V D          + 
Sbjct: 499 QPRKDLEIGEYKIHLKLADNQNKDQVTT--LDVHVCDCEGTVNNCMKAH 545

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 3/71 (4%)

Query: 163 SLLFKVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICISQDLDFESRSSYE 219
                +     +      V Y++   G        F ++  +G + ++Q LD E+ + Y 
Sbjct: 16  EFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYI 75

Query: 220 FPVVATDRGKE 230
               A     E
Sbjct: 76  LYSHAVSSNGE 86

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  184 bits (470), Expect = 1e-56
 Identities = 54/255 (21%), Positives = 88/255 (34%), Gaps = 36/255 (14%)

Query: 1   EISTREPLDREARSSHE------LVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQ 54
            +  ++  D E     +      ++           +    V I V DVND  P  ++  
Sbjct: 56  AVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRP 115

Query: 55  EDV-ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRT 113
             +   V+   PP T V   +A D D   N  I Y I++       G F +D  SGV+RT
Sbjct: 116 LPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRD---RTGGRFEVDERSGVVRT 170

Query: 114 KSVLDHEDRSIYRIAVAATDNGFP----SRQTVRLLRVEVLDLNDNRPTFTSSSLLFKV- 168
           +     +    Y + V A D          Q+    R+ ++      P F   S   ++ 
Sbjct: 171 RGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIP 229

Query: 169 ------------SASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRS 216
                        A       +  + YTL         F +   SG + ++++LDFE   
Sbjct: 230 ENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLR 286

Query: 217 S---YEFPVVATDRG 228
               Y   V AT+  
Sbjct: 287 QPHVYSLIVTATEDS 301

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  174 bits (442), Expect = 2e-52
 Identities = 63/250 (25%), Positives = 102/250 (40%), Gaps = 36/250 (14%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPR----SSRVAVKISVTDVNDNAPELVDPQED 56
            + TR     +    + L  +A DQ          S    ++S+      AP+   P  +
Sbjct: 167 VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYE 225

Query: 57  VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
              + E Q   ++++  +A    D     I Y++       G G F I P SG+++    
Sbjct: 226 A-EIPENQKKDSDIISIKAKSFADRE---IRYTLK--AQGQGAGTFNIGPTSGIVKLAKE 279

Query: 117 LDHEDRS---IYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSS---------- 163
           LD ED     +Y + V AT++      T   L + V D+NDN P F              
Sbjct: 280 LDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDI 338

Query: 164 ----LLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFES-RSSY 218
                + +V A D D G NA + Y + +      HF + S +G I  ++ LD ++  + Y
Sbjct: 339 PLGTSILRVKAMDSDSGSNAEIEYLVSDD-----HFAVDS-NGIIVNNKQLDADNNNAYY 392

Query: 219 EFPVVATDRG 228
           EF V A D+G
Sbjct: 393 EFIVTAKDKG 402

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  140 bits (356), Expect = 7e-40
 Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 13/155 (8%)

Query: 1   EISTREPLDREARSS---HELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDV 57
            +   + LD E       + L+  A +  S   S+ V + I VTDVNDNAP+   P    
Sbjct: 273 IVKLAKELDFEDLRQPHVYSLIVTATE-DSGGFSTSVDLTIRVTDVNDNAPKFELPDYQA 331

Query: 58  ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVL 117
            +V E+ P GT ++R +A+D D GSNA I Y +      D +  F +D  +G+I     L
Sbjct: 332 HNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVS-----DDH--FAVDS-NGIIVNNKQL 383

Query: 118 DHED-RSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
           D ++  + Y   V A D G P +  V  +RV   +
Sbjct: 384 DADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  125 bits (315), Expect = 5e-34
 Identities = 32/195 (16%), Positives = 59/195 (30%), Gaps = 32/195 (16%)

Query: 60  VREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGV-----FTIDPISGVIRTK 114
           V     P   +      + D  +     + + K  D + + +     +     +G +R K
Sbjct: 4   VTRAVRPTKRI---EFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK 60

Query: 115 SVLDHEDRS------IYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS------ 162
              D+E+         + I      N        + + + V D+ND  P F +       
Sbjct: 61  KKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA 120

Query: 163 ---------SLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFE 213
                    + +F + A DPD   N         +      F +   SG +       F+
Sbjct: 121 VVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRT---GGRFEVDERSGVVRTRGTDLFQ 177

Query: 214 SRSSYEFPVVATDRG 228
               Y   V A D+ 
Sbjct: 178 LDMEYVLYVKAEDQN 192

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  182 bits (463), Expect = 2e-54
 Identities = 68/253 (26%), Positives = 103/253 (40%), Gaps = 27/253 (10%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
           ++S  +PLDRE  +   L A A D       + + + I+V D+NDN PE    Q    SV
Sbjct: 59  QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF-LHQVWNGSV 117

Query: 61  REEQPPGTEVVRARAVDKDD--GSNATISYSILKGR-DTDGYGVFTIDPISGVIRT-KSV 116
            E   PGT V+   A+D DD    N  + Y IL     T    +FTI+  +G I T  + 
Sbjct: 118 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAG 177

Query: 117 LDHEDRSIYRIAVAATDNGFP---SRQTVRLLRVEVLDLNDNRPTFTSSSLLFKV----- 168
           LD E    Y + + ATD                + V D+NDN P FT+ +   +V     
Sbjct: 178 LDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRV 237

Query: 169 -------SASDPDCGVNAM--VNYTLGESPSRTNHFYM----KSVSGEICISQDLDFESR 215
                  + +D D          Y +         F +     S  G + + + +DFE+ 
Sbjct: 238 DVIVANLTVTDKDQPHTPAWNAAYRISGGDPT-GRFAILTDPNSNDGLVTVVKPIDFETN 296

Query: 216 SSYEFPVVATDRG 228
             +   V A ++ 
Sbjct: 297 RMFVLTVAAENQV 309

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  173 bits (441), Expect = 3e-51
 Identities = 65/249 (26%), Positives = 101/249 (40%), Gaps = 28/249 (11%)

Query: 2   ISTREPLDREARSSHELVAEARDQG------SPPRSSRVAVKISVTDVNDNAPELVDPQE 55
           ++  +P+D E      L   A +Q         P  S   V ++V DVN+N P    P  
Sbjct: 285 VTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYF-APNP 342

Query: 56  DVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKS 115
            +I   E    GT +    A D D      I Y+ L   D   +    IDP++G I T +
Sbjct: 343 KIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKL--SDPANW--LKIDPVNGQITTIA 398

Query: 116 VLDHED----RSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLF----- 166
           VLD E      +IY     A+DNG P       L++ +LD+NDN P              
Sbjct: 399 VLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPE 458

Query: 167 ----KVSASDPDCGVNAM-VNYTL-GESPSRTNHFYMKSVSGEIC-ISQDLDFESRSSYE 219
                ++A D D   NA    + L     +   ++ +  ++G+   ++  + F     YE
Sbjct: 459 PNSINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYE 518

Query: 220 FPVVATDRG 228
            P++ TD G
Sbjct: 519 VPIIITDSG 527

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  168 bits (428), Expect = 2e-49
 Identities = 67/261 (25%), Positives = 99/261 (37%), Gaps = 41/261 (15%)

Query: 1   EIST-REPLDREARSSHELVAEARDQGSPP---RSSRVAVKISVTDVNDNAPELVDPQED 56
           +I T    LDRE    + L+ +A D    P    S+     I+VTDVNDN PE       
Sbjct: 170 DIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEF--TAMT 227

Query: 57  VISVREEQPPGTEVVRARAVDKDDGSNA--TISYSILKGRDTDGYGVFTIDPIS----GV 110
                 E      V      DKD         +Y I  G   D  G F I        G+
Sbjct: 228 FYGEVPENRVDVIVANLTVTDKDQPHTPAWNAAYRISGG---DPTGRFAILTDPNSNDGL 284

Query: 111 IRTKSVLDHEDRSIYRIAVAATDNGF------PSRQTVRLLRVEVLDLNDNRPTFTSSS- 163
           +     +D E   ++ + VAA +            Q+   + V V+D+N+N P F  +  
Sbjct: 285 VTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPK 343

Query: 164 ------------LLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLD 211
                       +L  ++A DPD  +   + YT    P+  N   +  V+G+I     LD
Sbjct: 344 IIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPA--NWLKIDPVNGQITTIAVLD 401

Query: 212 FES----RSSYEFPVVATDRG 228
            ES     + Y    +A+D G
Sbjct: 402 RESPNVKNNIYNATFLASDNG 422

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  145 bits (369), Expect = 5e-41
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 10/168 (5%)

Query: 1   EISTREPLDREA----RSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQED 56
           +I+T   LDRE+     + +     A D G PP S    ++I + D+NDNAP+++  +  
Sbjct: 393 QITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQE-- 450

Query: 57  VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVI-RTKS 115
                E   P    +   A+D D   NA      L          +TI+ ++G   +   
Sbjct: 451 -AETCETPEPN--SINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNL 507

Query: 116 VLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSS 163
            +   +  IY + +  TD+G P +  + +LRV+V   + N        
Sbjct: 508 KIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVHH 555

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  139 bits (353), Expect = 1e-38
 Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 21/191 (10%)

Query: 58  ISVREEQPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSV 116
           I++ E    G        +  D   N ++ YS+   G D    G+F I+PISG +     
Sbjct: 7   INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65

Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS-------------S 163
           LD E  + + +   A D      +    + + V+D+NDNRP F                +
Sbjct: 66  LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125

Query: 164 LLFKVSASDPD--CGVNAMVNYTLGE---SPSRTNHFYMKSVSGEI-CISQDLDFESRSS 217
            +  V+A D D    +N M+ Y +     S    N F + + +G+I  ++  LD E    
Sbjct: 126 YVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ 185

Query: 218 YEFPVVATDRG 228
           Y   + ATD  
Sbjct: 186 YTLIIQATDME 196

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 167 KVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVV 223
           ++     D   N  + Y++   G     T  F +  +SG++ +++ LD E  + +     
Sbjct: 20  ELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAH 79

Query: 224 ATDRGKE 230
           A D    
Sbjct: 80  AVDINGN 86

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  179 bits (457), Expect = 1e-53
 Identities = 66/247 (26%), Positives = 96/247 (38%), Gaps = 22/247 (8%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
            +    PLDRE    + L + A  +   P    + + I+V D NDN P+         SV
Sbjct: 65  WMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQD-VFRGSV 123

Query: 61  REEQPPGTEVVRARAVDKDD---GSNATISYSILKGR-DTDGYGVFTIDPISGVIRTKSV 116
           RE   PGT+V+   A D+DD     N  +SYSILK   +     +FTI+  +GVI     
Sbjct: 124 REGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGT 183

Query: 117 -LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVS------ 169
            LD E    Y + V ATD             +++ D NDN P F   +    V       
Sbjct: 184 GLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGF 243

Query: 170 ------ASDPDCGVNAMVNYTLGESPSRTNHFYM----KSVSGEICISQDLDFESRSSYE 219
                  +D D               +    F +    +S  G +  ++ LDFE R  Y 
Sbjct: 244 EVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYV 303

Query: 220 FPVVATD 226
             +   +
Sbjct: 304 LQITVEN 310

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  176 bits (449), Expect = 2e-52
 Identities = 52/243 (21%), Positives = 87/243 (35%), Gaps = 23/243 (9%)

Query: 2   ISTREPLDREARSSHELVAEARDQ---GSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI 58
           ++T + LD E R  + L     +      P  +S   V ++V DVN+  P  V P    +
Sbjct: 288 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFV-PAVSRV 345

Query: 59  SVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLD 118
            V E+   G +++   A D D      +SY I    D   +   T++  +G++     LD
Sbjct: 346 DVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIG--NDPARW--LTVNKDNGIVTGNGNLD 401

Query: 119 HEDR----SIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLF-------- 166
            E      + Y + +  TD+G         L + VLD+NDN P  +              
Sbjct: 402 RESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ 461

Query: 167 KVSASDPDCGVNAMV-NYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVAT 225
            ++ SD D   N      +L                G   +        +  Y   V+ +
Sbjct: 462 VLTISDADIPPNTYPYKVSLSHGSDL-TWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLS 520

Query: 226 DRG 228
           D  
Sbjct: 521 DAQ 523

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  169 bits (429), Expect = 1e-49
 Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 34/254 (13%)

Query: 1   EIST-REPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVIS 59
            IS     LDRE    + L  +A D      S      I +TD NDNAP      +   +
Sbjct: 177 VISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIF--DPKTYTA 234

Query: 60  VREEQPPGTEVVRARAVDKD-DGSNATISYSILKGRDTDGYGVFTIDPI----SGVIRTK 114
           +  E   G EV R    D D  G+ A  +   ++    +  G F I        G++ T 
Sbjct: 235 LVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRV---NEGGFFNITTDPESNQGILTTA 291

Query: 115 SVLDHEDRSIYRIAVAATD---NGFPSRQTVRLLRVEVLDLNDNRPTFTSSS-------- 163
             LD E R  Y + +   +      P   +   + V V D+N+  P F  +         
Sbjct: 292 KGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSED 350

Query: 164 -----LLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESR--- 215
                 +  + A DPD      ++Y +G  P+      +   +G +  + +LD ES    
Sbjct: 351 LSRGEKIISLVAQDPDKQQIQKLSYFIGNDPA--RWLTVNKDNGIVTGNGNLDRESEYVK 408

Query: 216 -SSYEFPVVATDRG 228
            ++Y   ++ TD G
Sbjct: 409 NNTYTVIMLVTDDG 422

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  132 bits (335), Expect = 3e-36
 Identities = 48/192 (25%), Positives = 76/192 (39%), Gaps = 24/192 (12%)

Query: 58  ISVREEQPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSV 116
           +S  E  P    +V    +  +      + YSI  +G D    GVF I+  +G +     
Sbjct: 15  VSENERGPFPKRLV---QIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP 71

Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS-------------S 163
           LD E+   Y ++  A        +    + + V+D NDNRP FT               +
Sbjct: 72  LDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGT 131

Query: 164 LLFKVSASDPD---CGVNAMVNYTLGE---SPSRTNHFYMKSVSGEI-CISQDLDFESRS 216
            +  VSA+D D     +N +++Y++ +        N F +   +G I  I   LD E   
Sbjct: 132 QVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFP 191

Query: 217 SYEFPVVATDRG 228
            Y   V ATD  
Sbjct: 192 EYTLTVQATDLE 203

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  125 bits (315), Expect = 2e-33
 Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 16/164 (9%)

Query: 1   EISTREPLDREAR----SSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQED 56
            ++    LDRE+     +++ ++    D G    +    + + V DVNDN P        
Sbjct: 393 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPS---PR 449

Query: 57  VISVREEQPPGTEVVRARAVDKDDGSNA-TISYSILKGRDTDGYGVFTIDPISGVIRTKS 115
           V ++ ++ P    +      D D   N      S+  G D             G     S
Sbjct: 450 VFTMCDQNPEPQVLT---ISDADIPPNTYPYKVSLSHGSDL---TWKAELDSKGTSMLLS 503

Query: 116 VLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF 159
                 +  Y I V  +D     + TV  +   V          
Sbjct: 504 PTQQLKKGDYSIYVLLSDAQNNPQLTV--VNATVCSCEGKAIKC 545

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 3/66 (4%)

Query: 168 VSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVA 224
           +     +      V Y++   G        F ++  +G + +++ LD E    Y     A
Sbjct: 27  LVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHA 86

Query: 225 TDRGKE 230
                 
Sbjct: 87  VSENGS 92

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  179 bits (456), Expect = 3e-52
 Identities = 67/247 (27%), Positives = 97/247 (39%), Gaps = 22/247 (8%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
            +    PLDRE    + L + A  +   P    + + I+V D NDN P+         SV
Sbjct: 214 WMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKF-TQDVFRGSV 272

Query: 61  REEQPPGTEVVRARAVDKDD---GSNATISYSILKGR-DTDGYGVFTIDPISGVIRTKSV 116
           RE   PGT+V+   A D+DD     N  +SYSILK   +     +FTI+  +GVI     
Sbjct: 273 REGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGT 332

Query: 117 -LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKV------- 168
            LD E    Y + V ATD             +++ D NDN P F   +    V       
Sbjct: 333 GLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGF 392

Query: 169 -----SASDPDCGVNAMVNYTLGESPSRTNHFYM----KSVSGEICISQDLDFESRSSYE 219
                S +D D               +    F +    +S  G +  ++ LDFE R  Y 
Sbjct: 393 EVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYV 452

Query: 220 FPVVATD 226
             +   +
Sbjct: 453 LQITVEN 459

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  172 bits (438), Expect = 1e-49
 Identities = 52/243 (21%), Positives = 87/243 (35%), Gaps = 23/243 (9%)

Query: 2   ISTREPLDREARSSHELVAEARDQ---GSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI 58
           ++T + LD E R  + L     +      P  +S   V ++V DVN+  P    P    +
Sbjct: 437 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFF-VPAVSRV 494

Query: 59  SVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLD 118
            V E+   G +++   A D D      +SY I  G D   +   T++  +G++     LD
Sbjct: 495 DVSEDLSRGEKIISLVAQDPDKQQIQKLSYFI--GNDPARW--LTVNKDNGIVTGNGNLD 550

Query: 119 HEDR----SIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLF-------- 166
            E      + Y + +  TD+G         L + VLD+NDN P  +              
Sbjct: 551 RESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ 610

Query: 167 KVSASDPDCGVNAM-VNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVAT 225
            ++ SD D   N      +L                G   +        +  Y   V+ +
Sbjct: 611 VLTISDADIPPNTYPYKVSLSHGSDL-TWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLS 669

Query: 226 DRG 228
           D  
Sbjct: 670 DAQ 672

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  151 bits (382), Expect = 4e-42
 Identities = 56/246 (22%), Positives = 92/246 (37%), Gaps = 26/246 (10%)

Query: 8   LDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQED----VISVREE 63
             R  + S  +   ++   S   +   + K+ V    +    L   + D     I V E 
Sbjct: 108 DARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSEN 167

Query: 64  QPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDR 122
           +  G    R   +  +      + YSI  +G D    GVF I+  +G +     LD E+ 
Sbjct: 168 ER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEY 226

Query: 123 SIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS-------------SLLFKVS 169
             Y ++  A        +    + + V+D NDNRP FT               + +  VS
Sbjct: 227 DKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVS 286

Query: 170 ASDPD---CGVNAMVNYTLGE---SPSRTNHFYMKSVSGEI-CISQDLDFESRSSYEFPV 222
           A+D D     +N +++Y++ +        N F +   +G I  I   LD E    Y   V
Sbjct: 287 ATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTV 346

Query: 223 VATDRG 228
            ATD  
Sbjct: 347 QATDLE 352

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  119 bits (299), Expect = 4e-31
 Identities = 30/167 (17%), Positives = 51/167 (30%), Gaps = 16/167 (9%)

Query: 1   EISTREPLDREAR----SSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQED 56
            ++    LDRE+     +++ ++    D G    +    + + V DVNDN P        
Sbjct: 542 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPS---PR 598

Query: 57  VISVREEQPPGTEVVRARAVDKDDGSNA-TISYSILKGRDTDGYGVFTIDPISGVIRTKS 115
           V ++ ++ P    +      D D   N      S+  G D             G     S
Sbjct: 599 VFTMCDQNPEPQVLT---ISDADIPPNTYPYKVSLSHGSDLTW---KAELDSKGTSMLLS 652

Query: 116 VLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS 162
                 +  Y I V  +D     + TV  +   V             
Sbjct: 653 PTQQLKKGDYSIYVLLSDAQNNPQLTV--VNATVCSCEGKAIKCQEK 697

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  111 bits (278), Expect = 4e-28
 Identities = 31/233 (13%), Positives = 56/233 (24%), Gaps = 24/233 (10%)

Query: 22  ARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDG 81
           A             V     DV+   P     +      R E   G ++ +    D    
Sbjct: 9   ASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTR 68

Query: 82  SNATISYSILKGR---DTDGYGVFTIDPISGVIRTKSVLDHEDR-SIYRIAVAATDNGFP 137
            +        + R   D        +        T S  D         IAVA+  +   
Sbjct: 69  KHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSG 128

Query: 138 SRQTVRLLRVEVLDLNDNRPTFTSS-----------------SLLFKVSASDPDCGVNAM 180
                R  ++ VL   +                             ++     +      
Sbjct: 129 EEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIKSNKDRFNK 188

Query: 181 VNYTL---GESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGKE 230
           V Y++   G        F ++  +G + +++ LD E    Y     A      
Sbjct: 189 VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGS 241

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 15/116 (12%), Positives = 38/116 (32%), Gaps = 22/116 (18%)

Query: 130 AATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS--------------SLLFKVSASDPDC 175
            A+         ++++     D++  +P F+S+                L KV+ SD   
Sbjct: 8   NASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTT 67

Query: 176 GVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGKET 231
             +    Y +G+     + F +    G + + + +     + +          K +
Sbjct: 68  RKH--GLYDVGD-----SRFRVLP-DGTVLVKRHVKLHKDTKFTISTWDARGIKHS 115

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  161 bits (411), Expect = 4e-50
 Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 26/200 (13%)

Query: 44  NDNAPELVDPQ-EDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVF 102
            +  P   +   +  + + E+ P G+ V +  A D D   N  + + +      +    F
Sbjct: 2   VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGE---EASRFF 55

Query: 103 TIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS 162
            ++P +GV+  +  LD E +S + +  + +D+     + V    ++V D+NDN PTF + 
Sbjct: 56  AVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKV---NIQVGDVNDNAPTFHNQ 112

Query: 163 SL-------------LFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQD 209
                          +F V+A+DPD G    V Y+       +  F + S  G + + Q+
Sbjct: 113 PYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPP---SPFFAIDSARGIVTVIQE 169

Query: 210 LDFESRSSYEFPVVATDRGK 229
           LD+E   +Y+  V ATD+ K
Sbjct: 170 LDYEVTQAYQLTVNATDQDK 189

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  150 bits (381), Expect = 1e-45
 Identities = 45/156 (28%), Positives = 64/156 (41%), Gaps = 10/156 (6%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
            +  R+PLDRE +S   +     D           V I V DVNDNAP     Q   + +
Sbjct: 63  VVWLRQPLDRETKSEFTVEFSVSDHQGVITRK---VNIQVGDVNDNAPT-FHNQPYSVRI 118

Query: 61  REEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE 120
            E  P GT +    A D D G+  ++ YS            F ID   G++     LD+E
Sbjct: 119 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP-----FFAIDSARGIVTVIQELDYE 173

Query: 121 DRSIYRIAVAATDNGFPSR-QTVRLLRVEVLDLNDN 155
               Y++ V ATD        T+  L + + D+ D 
Sbjct: 174 VTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  147 bits (373), Expect = 2e-44
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 13/164 (7%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSP-PRSSRVAVKISVTDVNDNAPELVDPQEDVIS 59
            I   + LDRE R+ + L+A+A D+ +  P        + V D+NDN PE +       +
Sbjct: 57  NIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHA-N 115

Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSILKGRDTDGYGVFTIDPISGVIRT-KS 115
           V E    GT V++  A D DD   G++A + YSIL+G+       F+++  +G+IRT   
Sbjct: 116 VPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQP-----YFSVEAQTGIIRTALP 170

Query: 116 VLDHEDRSIYRIAVAATDNG--FPSRQTVRLLRVEVLDLNDNRP 157
            +D E +  Y + + A D G           + + + D   +  
Sbjct: 171 NMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  130 bits (328), Expect = 1e-37
 Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 25/193 (12%)

Query: 57  VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
              + E   P   +V     D D G +  I Y +  G       +F ID  SG I     
Sbjct: 8   FFVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYIL-SGEGAGT--IFVIDDKSGNIHATKT 63

Query: 117 LDHEDRSIYRIAVAATDNGFP-SRQTVRLLRVEVLDLNDNRPTFTSS------------- 162
           LD E+R+ Y +   A D       +      V+V D+NDN P F                
Sbjct: 64  LDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVG 123

Query: 163 SLLFKVSASDPD---CGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQ-DLDFESRSSY 218
           + + +V+ASD D    G +A + Y++ E      +F +++ +G I  +  ++D E++  Y
Sbjct: 124 TSVIQVTASDADDPTYGNSAKLVYSILEG---QPYFSVEAQTGIIRTALPNMDREAKEEY 180

Query: 219 EFPVVATDRGKET 231
              + A D G   
Sbjct: 181 HVVIQAKDMGGHM 193

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 1   EISTREP-LDREARSSHELVAEARDQGS--PPRSSRVAVKISVTDVNDNAPE 49
            I T  P +DREA+  + +V +A+D G      S    V I++TD   +  +
Sbjct: 164 IIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK 215

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score =  144 bits (365), Expect = 2e-43
 Identities = 49/156 (31%), Positives = 70/156 (44%), Gaps = 6/156 (3%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
            +   +PLDREA + + L + A           + + I+VTD NDN PE    +    SV
Sbjct: 59  WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEF-TQEVFEGSV 117

Query: 61  REEQPPGTEVVRARAVDKDDGS---NATISYSILKGR-DTDGYGVFTIDPISGVIRT-KS 115
            E   PGT V++  A D DD     NA I+Y+I+    +     +FT++  +GVI    S
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177

Query: 116 VLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
            LD E    Y + V A D       T     + V D
Sbjct: 178 GLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score =  142 bits (359), Expect = 2e-42
 Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 22/192 (11%)

Query: 58  ISVREEQPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSV 116
           IS  E +  G        +  +      + YSI  +G D    GVF I+  +G ++    
Sbjct: 7   ISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65

Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS-------------S 163
           LD E  + Y +   A  +   + +    + + V D NDNRP FT               +
Sbjct: 66  LDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGT 125

Query: 164 LLFKVSASDPDCGV---NAMVNYTLGE---SPSRTNHFYMKSVSGEI-CISQDLDFESRS 216
            + KVSA+D D  V   NA + YT+          N F +   +G I  ++  LD ES  
Sbjct: 126 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 185

Query: 217 SYEFPVVATDRG 228
           +Y   V A D  
Sbjct: 186 TYTLVVQAADLQ 197

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score =  142 bits (360), Expect = 1e-42
 Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 21/191 (10%)

Query: 58  ISVREEQPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSV 116
           I++ E    G        +  D   N ++ YS+   G D    G+F I+PISG +     
Sbjct: 7   INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65

Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS-------------S 163
           LD E  + + +   A D      +    + + V+D+NDNRP F                +
Sbjct: 66  LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125

Query: 164 LLFKVSASDPD--CGVNAMVNYTL---GESPSRTNHFYMKSVSGEI-CISQDLDFESRSS 217
            +  V+A D D    +N M+ Y +     S    N F + + +G+I  ++  LD E    
Sbjct: 126 YVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ 185

Query: 218 YEFPVVATDRG 228
           Y   + ATD  
Sbjct: 186 YTLIIQATDME 196

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score =  138 bits (349), Expect = 6e-41
 Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 8/158 (5%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
           ++S  +PLDRE  +   L A A D       + + + I+V D+NDN PE +    +  SV
Sbjct: 59  QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNG-SV 117

Query: 61  REEQPPGTEVVRARAVDKDD--GSNATISYSILKGR-DTDGYGVFTIDPISGVIRT-KSV 116
            E   PGT V+   A+D DD    N  + Y IL     T    +FTI+  +G I T  + 
Sbjct: 118 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAG 177

Query: 117 LDHEDRSIYRIAVAATDNGFP---SRQTVRLLRVEVLD 151
           LD E    Y + + ATD                + V D
Sbjct: 178 LDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score =  139 bits (352), Expect = 5e-41
 Identities = 30/183 (16%), Positives = 54/183 (29%), Gaps = 28/183 (15%)

Query: 1   EISTREPLDREARSSHEL--------------VAEARDQGSPPRSSRVAVKISVTDVNDN 46
            +  +  LD  +     +                                ++  +  N +
Sbjct: 66  LLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTS 125

Query: 47  APELVDPQEDVI---------SVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTD 97
            P     +   +          +RE +PPGT         +      +++Y +L+G    
Sbjct: 126 FPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEG-- 183

Query: 98  GYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD-NGFPSRQTVRLLRVEVLDLNDNR 156
               F   P S  + T+  LD E R  Y +    T   G      +    V V D +D+ 
Sbjct: 184 --LPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSA 241

Query: 157 PTF 159
           P F
Sbjct: 242 PEF 244

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score =  120 bits (303), Expect = 7e-34
 Identities = 33/212 (15%), Positives = 52/212 (24%), Gaps = 43/212 (20%)

Query: 58  ISVREEQPPGTEV--VRARAVDKDDGSNATISYSILKGRDTDGY--GVFTIDPISGVIRT 113
             +  +Q  GT +  V A     ++  +  +   +     T  +      I   +G++  
Sbjct: 10  EKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYL 69

Query: 114 KSVLDHEDRSIYR--------------IAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF 159
           +  LDH                     + ++ T       Q     RV     N + P  
Sbjct: 70  QRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPAC 129

Query: 160 TSSSLLF-----------------------KVSASDPDCGVNAMVNYTLGESPSRTNHFY 196
           +S                                          V Y L E       F 
Sbjct: 130 SSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEG--LPFR 187

Query: 197 MKSVSGEICISQDLDFESRSSYEFPVVATDRG 228
               S E+     LD E R  YE   V T   
Sbjct: 188 SAPDSLEVSTRWALDREQREKYELVAVCTVHA 219

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score = 70.3 bits (172), Expect = 9e-15
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 1   EISTREPLDREARSSHELVAEARDQ-GSPPRSSRVAVKISVTDVNDNAPELVD 52
           E+STR  LDRE R  +ELVA      G+      V   ++V D +D+APE  +
Sbjct: 194 EVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFEN 246

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score =  137 bits (346), Expect = 1e-40
 Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 11/156 (7%)

Query: 1   EISTREPLDREARSSHELVAEARDQ-GSPPRSSRVAVKISVTDVNDNAPELVDPQEDVIS 59
           +I   E LDRE ++ +EL A   D+  +          I V+D+NDNAP  V    +  S
Sbjct: 54  DIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNG-S 112

Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
           V E    GT V +  A D DD     +AT++Y I+KG +      FT+D    +   ++ 
Sbjct: 113 VPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE-----YFTVDDSGVIFTARAD 167

Query: 117 LDHEDRSIYRIAVAATDN-GFPSRQTVRLLRVEVLD 151
           LD E +S Y I V A D  G     +   + + + D
Sbjct: 168 LDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score =  128 bits (324), Expect = 3e-37
 Identities = 44/190 (23%), Positives = 67/190 (35%), Gaps = 29/190 (15%)

Query: 58  ISVREEQ--PPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKS 115
           + +REE   P    V +  +       N    Y I          +F +    G I    
Sbjct: 7   MHIREEIDSPLPHHVGKLTS----SVGNKNAMYIIEGE---SANTIFKVQGYDGDIYAFE 59

Query: 116 VLDHEDRSIYRIAVAATD-NGFPSRQTVRLLRVEVLDLNDNRPTFTSS------------ 162
            LD E ++ Y +     D     S +      ++V D+NDN P F               
Sbjct: 60  RLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRL 119

Query: 163 -SLLFKVSASDPD---CGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSY 218
            + + KV+A D D      +A V Y + +      +F +           DLD ES+S+Y
Sbjct: 120 GTSVTKVTAEDADDPTVAGHATVTYQIIKG---NEYFTVDDSGVIFTARADLDRESQSAY 176

Query: 219 EFPVVATDRG 228
           E  V A D  
Sbjct: 177 EIIVKAKDAL 186

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  134 bits (339), Expect = 2e-39
 Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 13/158 (8%)

Query: 1   EISTREPLDREARSSHELVAEARDQGS-PPRSSRVAVKISVTDVNDNAPELVDPQEDVIS 59
           +I   + LDRE +  + L A+A ++ +  P        I + D+NDN P          +
Sbjct: 56  DIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTA-T 114

Query: 60  VREEQPPGTEVVRARAVDKDD---GSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
           V E    GT VV+  A D DD   G++A + YSIL+G+       F+++  +G+I+T  +
Sbjct: 115 VPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQP-----YFSVESETGIIKTALL 169

Query: 117 -LDHEDRSIYRIAVAATDNG--FPSRQTVRLLRVEVLD 151
            +D E+R  Y++ + A D G           + + + D
Sbjct: 170 NMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  130 bits (328), Expect = 9e-38
 Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 25/187 (13%)

Query: 60  VREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDH 119
           + E      + V     D+D G + ++ Y +          +F I+  +G I+    LD 
Sbjct: 10  LEEYTGSDYQYVGKLHSDQDRG-DGSLKYIL---SGDGAGDLFIINENTGDIQATKRLDR 65

Query: 120 EDRSIYRIAVAATDNG-FPSRQTVRLLRVEVLDLNDNRPTFTSS-------------SLL 165
           E++ +Y +   A +       +      +++ D+NDN P FT               + +
Sbjct: 66  EEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFV 125

Query: 166 FKVSASDPD---CGVNAMVNYTLGESPSRTNHFYMKSVSGEICI-SQDLDFESRSSYEFP 221
            +V+A+D D    G +A V Y++ +      +F ++S +G I     ++D E+R  Y+  
Sbjct: 126 VQVTATDADDPTYGNSAKVVYSILQG---QPYFSVESETGIIKTALLNMDRENREQYQVV 182

Query: 222 VVATDRG 228
           + A D G
Sbjct: 183 IQAKDMG 189

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score =  134 bits (338), Expect = 3e-39
 Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 11/161 (6%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISV 60
            +S    LDRE  ++++L  E  D         V +++ V D NDN P   +    +  V
Sbjct: 59  SVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREG-PYIGHV 117

Query: 61  REEQPPGTEVVRARAVDKDD--GSNATISYSILKG-RDTDGYGVFTIDPISGVIRT---K 114
            E  P GT V+R  A D DD    NA + Y+I +   D     +F IDP  G I T    
Sbjct: 118 MEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSP 177

Query: 115 SVLDHE--DRSIYRIAVAATDNG--FPSRQTVRLLRVEVLD 151
           ++LD E  +   Y + + A D               + + D
Sbjct: 178 ALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score =  132 bits (334), Expect = 1e-38
 Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 26/194 (13%)

Query: 58  ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVL 117
           I   + QP   +V +    D+ +GS   ++   +   D D  G F I+  +G +     L
Sbjct: 10  IPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGV---DQDPKGTFRINENTGSVSVTRTL 66

Query: 118 DHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSS-------------SL 164
           D E  + Y++ V  TD    + +    L V V+D NDNRP F                + 
Sbjct: 67  DRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTT 126

Query: 165 LFKVSASDPDC--GVNAMVNYTLGE---SPSRTNHFYMKSVSGEICI---SQDLDFESR- 215
           + +++A D D     NA++ Y + +        N FY+    G+I        LD E+  
Sbjct: 127 VMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLE 186

Query: 216 -SSYEFPVVATDRG 228
              YE  + A D  
Sbjct: 187 NPKYELIIEAQDMA 200

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score =  118 bits (299), Expect = 2e-34
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 38  ISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTD 97
            S +  NDN+P       +   + E   PGT +++ RA D D G N  I Y      +  
Sbjct: 2   SSGSSGNDNSPRFEKSVYEA-DLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATE-S 59

Query: 98  GYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRP 157
              +  +D  SG +     +D E+ +  R  V A D G P +     + + + D NDN P
Sbjct: 60  VRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 89.5 bits (223), Expect = 4e-23
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 14/96 (14%)

Query: 147 VEVLDLNDNRPTFTSS-------------SLLFKVSASDPDCGVNAMVNYTLGESPSRTN 193
                 NDN P F  S             + + ++ A+D D GVN  + Y  G +     
Sbjct: 2   SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61

Query: 194 H-FYMKSVSGEICISQDLDFESRSSYEFPVVATDRG 228
               +   SG + +   +D E  +   F V+A DRG
Sbjct: 62  RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRG 97

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 68.7 bits (169), Expect = 3e-15
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAP 48
            +S    +DRE  +       ARD+G PP++ +  V +++ D NDN P
Sbjct: 72  WLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score =  109 bits (275), Expect = 4e-31
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 5/114 (4%)

Query: 47  APELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTID 105
             + V P    I++ E    G        +      N ++ YS+   G D    G+F I+
Sbjct: 1   GSDWVIPP---INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIIN 56

Query: 106 PISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF 159
           PISG +     LD E  + + +   A D      +    + + V+D+NDNRP F
Sbjct: 57  PISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 71.1 bits (175), Expect = 2e-16
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPE 49
           ++S  +PLDRE  +   L A A D       + + + I+V D+NDN PE
Sbjct: 61  QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPE 109

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 56.5 bits (137), Expect = 7e-11
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 163 SLLFKVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICISQDLDFESRSSYE 219
               ++         N  + Y++   G     T  F +  +SG++ +++ LD E  + + 
Sbjct: 18  PFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFH 77

Query: 220 FPVVATDRG 228
               A D  
Sbjct: 78  LRAHAVDIN 86

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score =  108 bits (272), Expect = 2e-30
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 3/116 (2%)

Query: 38  ISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTD 97
            S +  NDN P   + Q +V  + E  P GT V++  A D D GSNA I Y         
Sbjct: 2   SSGSSGNDNRPVFKEGQVEV-HIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPA 60

Query: 98  GYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLN 153
              +F ++  +G+I  +  LD E+ +I+++ V A+D      +    + + V D+N
Sbjct: 61  TKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARAT--VTINVTDVN 114

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 87.1 bits (217), Expect = 3e-22
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 15/97 (15%)

Query: 147 VEVLDLNDNRPTFTSS-------------SLLFKVSASDPDCGVNAMVNYTLGE--SPSR 191
                 NDNRP F                + + ++ A+D D G NA + Y  G   +P+ 
Sbjct: 2   SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61

Query: 192 TNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRG 228
              F + + +G I + + LD E  + ++  V+A+D  
Sbjct: 62  KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGS 98

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 52.1 bits (126), Expect = 3e-09
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVN 44
            I+ +  LDRE  + H++   A D  S P  + V +   VTDVN
Sbjct: 73  LITVQRSLDREETAIHKVTVLASDGSSTPARATVTIN--VTDVN 114

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score =  107 bits (269), Expect = 5e-30
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 58  ISVREEQ--PPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTK 114
           +++RE +       + +  + D  +     I+Y    KG     +G+F  +  +G +   
Sbjct: 17  VALREGEDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVT 75

Query: 115 SVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFT 160
           S+LD E+   + +   A D    + +    LR++VLD+NDN P FT
Sbjct: 76  SILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFT 121

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 69.3 bits (170), Expect = 2e-15
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPE 49
           E++    LDRE      L   A D         + ++I V D+NDN P 
Sbjct: 71  ELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPV 119

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 3/62 (4%)

Query: 170 ASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATD 226
            SD        + Y     G +      F     +GE+ ++  LD E    +     A D
Sbjct: 35  HSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALD 94

Query: 227 RG 228
             
Sbjct: 95  AR 96

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 86.7 bits (215), Expect = 3e-22
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 58  ISVREEQ--PPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKS 115
           I + E Q  P   +V +    D+ +GS   ++   +   D D  G F I+  +G +    
Sbjct: 8   ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGV---DQDPKGTFRINENTGSVSVTR 64

Query: 116 VLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
            LD E  + Y++ V  TD    + +    L V V+D
Sbjct: 65  TLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 58.1 bits (141), Expect = 1e-11
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 163 SLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPV 222
             + KV  SD   G    +     +   +   F +   +G + +++ LD E+ ++Y+  V
Sbjct: 20  RDVGKVVDSDRPEGSKFRLTGKGVDQDPK-GTFRINENTGSVSVTRTLDRETIATYQLYV 78

Query: 223 VATDRG 228
             TD  
Sbjct: 79  ETTDAS 84

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 50.8 bits (122), Expect = 6e-09
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTD 42
            +S    LDRE  ++++L  E  D         V +++ V D
Sbjct: 59  SVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 85.9 bits (213), Expect = 5e-22
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 58  ISVREEQ--PPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKS 115
           IS+ E Q  P    V R    D+  GS   +    +   D +  G+F I+  SG +    
Sbjct: 7   ISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGV---DQEPKGIFKINENSGEVSVTK 63

Query: 116 VLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
            LD E    Y++ V  TD    + +    L + V+D
Sbjct: 64  ALDREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 163 SLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPV 222
            ++ +V  SD   G    +     +   +   F +   SGE+ +++ LD E+  SY+  V
Sbjct: 19  KIVGRVVVSDRIPGSKIKLYGKGVDQEPK-GIFKINENSGEVSVTKALDREAIPSYQLQV 77

Query: 223 VATDRG 228
             TD  
Sbjct: 78  ETTDEN 83

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 50.8 bits (122), Expect = 8e-09
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 1  EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTD 42
          E+S  + LDREA  S++L  E  D+        V ++I V D
Sbjct: 58 EVSVTKALDREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 84.4 bits (209), Expect = 2e-21
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 58  ISVREEQPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSV 116
           IS  E +  G        +  +      + YSI  +G DT   GVF I+  +G ++    
Sbjct: 11  ISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEP 69

Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
           LD E  + Y +   A  +   + +    + + V D
Sbjct: 70  LDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTD 42
            +   EPLDRE  +++ L + A           + + I+VTD
Sbjct: 63  WLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 167 KVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVV 223
            +     +      V Y++   G        F ++  +G + +++ LD E  ++Y     
Sbjct: 24  NLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSH 83

Query: 224 ATDRG 228
           A    
Sbjct: 84  AVSSN 88

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 79.4 bits (196), Expect = 1e-19
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 58  ISVREEQPP--GTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKS 115
           I + E Q P     V +    +  +G+   +S   +   D D  G+F I+ ISG +    
Sbjct: 7   ILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGV---DQDPKGIFRINEISGDVSVTR 63

Query: 116 VLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
            LD E  + Y + V  TD           L + V+D
Sbjct: 64  PLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 53.6 bits (129), Expect = 8e-10
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 165 LFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVA 224
           + KV  S+   G    ++    +   +   F +  +SG++ +++ LD E+ ++YE  V  
Sbjct: 21  VGKVIRSEGTEGAKFRLSGKGVDQDPK-GIFRINEISGDVSVTRPLDREAIANYELEVEV 79

Query: 225 TDRG 228
           TD  
Sbjct: 80  TDLS 83

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 1  EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTD 42
          ++S   PLDREA +++EL  E  D         V + ISV D
Sbjct: 58 DVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 73.6 bits (181), Expect = 2e-17
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 58  ISVREEQ-PPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
             V EE        V     D D G + +I Y +          VFTID  +G I     
Sbjct: 8   FFVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAG---IVFTIDDTTGDIHAIQR 63

Query: 117 LDHEDRSIYRIAVAATDNGF-PSRQTVRLLRVEVLD 151
           LD E+RS Y +   A D       +      +++ D
Sbjct: 64  LDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 53.2 bits (128), Expect = 9e-10
 Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 155 NRPTFTSSSLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFES 214
              T     L      SD D G +  + Y L         F +   +G+I   Q LD E 
Sbjct: 14  YTGTDP---LYVGKLHSDMDRG-DGSIKYIL-SGEGAGIVFTIDDTTGDIHAIQRLDREE 68

Query: 215 RSSYEFPVVATDRG 228
           RS Y     A DR 
Sbjct: 69  RSQYTLRAQALDRR 82

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 48.2 bits (115), Expect = 7e-08
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 1  EISTREPLDREARSSHELVAEARDQGS-PPRSSRVAVKISVTD 42
          +I   + LDRE RS + L A+A D+ +  P        I + D
Sbjct: 57 DIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 70.9 bits (174), Expect = 3e-16
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 58  ISVREEQ-PPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSV 116
           + V EE   P   +V     D D G +  I Y +  G       +F I+ I+G I     
Sbjct: 7   MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYIL-SGDGAGT--IFQINDITGDIHAIKR 62

Query: 117 LDHEDRSIYRIAVAATD-NGFPSRQTVRLLRVEVLD 151
           LD E+++ Y +   A D       +      ++V D
Sbjct: 63  LDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 48.6 bits (116), Expect = 5e-08
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 154 DNRPTFTSSSLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFE 213
           +         +L     +D D G +  + Y L         F +  ++G+I   + LD E
Sbjct: 12  EFSGPEP---ILVGRLHTDLDPG-SKKIKYIL-SGDGAGTIFQINDITGDIHAIKRLDRE 66

Query: 214 SRSSYEFPVVATDRG 228
            ++ Y     A D  
Sbjct: 67  EKAEYTLTAQAVDFE 81

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 1  EISTREPLDREARSSHELVAEARDQ-GSPPRSSRVAVKISVTD 42
          +I   + LDRE ++ + L A+A D   + P        I V D
Sbjct: 56 DIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	100.0
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	100.0
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	100.0
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	100.0
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	100.0
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	100.0
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	100.0
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	100.0
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	100.0
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	100.0
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	100.0
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	100.0
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	100.0
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	100.0
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	100.0
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.97
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	99.97
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	99.97
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.97
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.96
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.95
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.92
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.89
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.84
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.83
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.83
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.8
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.79
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.78
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.77
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.77
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.76
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	99.62
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.48
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.48
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.43
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.41
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.34
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.33
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.31
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.29
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.07
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	98.16
3pdd_A	190	Glycoside hydrolase, family 9; CBHA, beta-sandwich	95.04
1op4_A	159	Neural-cadherin; beta sandwich, cadherin-like doma	92.77
3rb5_A	298	Na/Ca exchange protein; CBD12, calcium binding and	91.48
2yhg_A	437	SDE_182CT, cellulose-binding protein; hydrolase, g	89.17
3ead_A	137	Na/Ca exchange protein; CBD1, calcium regulation,	88.92
3gin_A	160	Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calci	85.49
2yrl_A	102	KIAA1837 protein; PKD domain, NPPSFA, national pro	85.36
2kpn_A	103	Bacillolysin; solution structure, BIG_3 domain, PF	84.18

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=100.00  E-value=1.7e-49  Score=324.32  Aligned_cols=225  Identities=34%  Similarity=0.501  Sum_probs=202.0

Q ss_pred             CeEecCCCCcCCCCeEEEEEEEEeCCC-CCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCC
Q psy8618           1 EISTREPLDREARSSHELVAEARDQGS-PPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKD   79 (232)
Q Consensus         1 ~i~~~~~lD~E~~~~~~l~v~a~d~~~-~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D   79 (232)
                      .|.+.++||||.+..|.|+|.|+|+++ +++++.+.|+|.|.|+|||+|.|... .|.+.|+|+.++|+.++++.|+|+|
T Consensus        56 ~i~~~~~LDrE~~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~-~y~~~v~E~~~~gt~v~~v~A~D~D  134 (322)
T 2a62_A           56 DIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNG-PYHATVPEMSILGTSVTNVTATDAD  134 (322)
T ss_dssp             EEEECSCCCTTTCSBCCEEEEEECTTTCSEEEEEEEECEECCCCSCSCBCCSSS-EEEEEECSSCCTTCBCCCCCCCBCS
T ss_pred             EEEEeccCCcccccEEEEEEEEEECCCCCcccceEEEEEEEEecCCCCCccCCC-ceEEEEeCCCCCCCEEEEEEEEeCC
Confidence            378899999999999999999999875 45788899999999999999999987 7899999999999999999999999


Q ss_pred             C---CCCcEEEEEEeeCCCCCCcccEEEeCCceEEEEC-ccCCccCCCEEEEEEEEEeCCCCC--cceeEEEEEEEEecC
Q psy8618          80 D---GSNATISYSILKGRDTDGYGVFTIDPISGVIRTK-SVLDHEDRSIYRIAVAATDNGFPS--RQTVRLLRVEVLDLN  153 (232)
Q Consensus        80 ~---~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~-~~ld~e~~~~~~l~v~a~d~~~~~--~~~~~~v~i~v~d~N  153 (232)
                      .   |.|+.++|+|.++     ..+|.|++.+|.|++. +.||||....|.|.|.|+|+|.|+  +++.+.|+|+|.|+|
T Consensus       135 ~~~~G~n~~i~Y~i~~~-----~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~~~~s~~~~v~I~V~DvN  209 (322)
T 2a62_A          135 DPVYGNSAKLVYSILEG-----QPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVN  209 (322)
T ss_dssp             CSSSTTSSCEEEEEEEC-----TTTEEECTTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSSSCCBCCEEEEEEECCCC
T ss_pred             CCCCCccEEEEEEEccC-----CCCEEEecCCCEEEecccCCCcccCCeEEEEEEEEECCCCCCCceeEEEEEEEEEecC
Confidence            6   7788999999875     2579999999999998 899999999999999999998874  889999999999999


Q ss_pred             CCCCeeeCCceEE-------------EEEeecCCCCCCeEEEEEEccCCCCCCcEEEE----CCceEEEEeecCCCcccc
Q psy8618         154 DNRPTFTSSSLLF-------------KVSASDPDCGVNAMVNYTLGESPSRTNHFYMK----SVSGEICISQDLDFESRS  216 (232)
Q Consensus       154 d~~P~f~~~~~~~-------------~v~~~D~d~~~~~~i~y~l~~~~~~~~~f~i~----~~~G~i~~~~~ld~e~~~  216 (232)
                      ||+|.|....|.+             +|.++|+|.+.++.++|+|..+ +..+.|.|+    +.+|.|++.++||||...
T Consensus       210 Dn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n~~i~Y~i~~g-~~~~~F~I~~d~~~~tG~i~~~~~LD~E~~~  288 (322)
T 2a62_A          210 DNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDG-DGTALFEITSDAQAQDGVIRLRKPLDFETKK  288 (322)
T ss_dssp             CCCCCCSCSEEEEEECSCCSSCCEEEEEECCCSSCGGGTCCEEEEC----CCSSBCCBCCTTTSEEEEEBCSCCCCSSCC
T ss_pred             CCCCeecCCCceeEeECCCCCCcEEEEEEEEeCCCCCCceEEEEEECC-CCCCcEEEeccCCCceEEEEECCcCCcccCC
Confidence            9999999887755             4556888988888999999876 567899998    468999999999999999


Q ss_pred             EEEEEEEEEECCccCC
Q psy8618         217 SYEFPVVATDRGKETQ  232 (232)
Q Consensus       217 ~y~l~V~a~D~g~~~q  232 (232)
                      .|.|.|+|+|+|.|++
T Consensus       289 ~y~l~V~A~D~g~pp~  304 (322)
T 2a62_A          289 SYTLKVEAANIHIDPR  304 (322)
T ss_dssp             EEEEEEEEECCCSSCT
T ss_pred             eEEEEEEEEECCCCCc
Confidence            9999999999998864

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=100.00  E-value=1.6e-44  Score=294.90  Aligned_cols=219  Identities=25%  Similarity=0.329  Sum_probs=186.3

Q ss_pred             CeEecCCCCcCCC-----CeEEEEEEEEeCCCC-CceeEEEEEEEEEeCCCCCCeecCCCc-eEEEEecCCCCCcEEEEE
Q psy8618           1 EISTREPLDREAR-----SSHELVAEARDQGSP-PRSSRVAVKISVTDVNDNAPELVDPQE-DVISVREEQPPGTEVVRA   73 (232)
Q Consensus         1 ~i~~~~~lD~E~~-----~~~~l~v~a~d~~~~-~~~~~~~v~v~V~dvNd~~P~f~~~~~-~~~~v~E~~~~g~~v~~v   73 (232)
                      .|.+.++||||..     ..|.|+|.|.|++.| ++++.+.|+|.|.|+|||+|.|..... |.+.|+|+.++|+.++++
T Consensus        51 ~l~~~~~LD~E~~~~~~~~~~~l~v~a~d~~~~~~~s~~~~v~I~V~DvNDn~P~F~~~~~~y~~~v~En~~~gt~v~~v  130 (316)
T 3ubf_A           51 AVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTL  130 (316)
T ss_dssp             EEEESSCCCGGGSCTTCEEEEEEEEEC-------CCCEEEEEEEEEECTTCCCCEECCSSSSEEEEECTTCCTTCEEEEC
T ss_pred             EEEECCccChhhcccccceEEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccCCCCCCEEEEEeCCCCCCCEEEEE
Confidence            3788999999984     578899999998866 578999999999999999999998732 789999999999999999


Q ss_pred             EEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeCCC----CCcceeEEEEEEE
Q psy8618          74 RAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGF----PSRQTVRLLRVEV  149 (232)
Q Consensus        74 ~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~~----~~~~~~~~v~i~v  149 (232)
                      .|+|+|.+.+  ++|+|..+   +..++|.|++.+|.|++.++||||....|.|.|.|+|++.    +++++++.|.|+|
T Consensus       131 ~A~D~D~g~n--i~Y~i~~~---~~~~~F~Id~~tG~i~~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V  205 (316)
T 3ubf_A          131 QARDPDTDHN--IHYFIVRD---RTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSI  205 (316)
T ss_dssp             CEECSSTTCC--EEEEEEEE---ESSSCEEECTTTCEEEECSSCCCCTTCEEEEEEEEEESCC-------CBCCCEEEEE
T ss_pred             EEECCCCCCc--eEEEEEeC---CCCCEEEEECCccEEEECCcCCcccCcEEEEEEEEEeCCCCCCCccccceEEEEEEE
Confidence            9999998877  99999876   5667999999999999999999999999999999999874    4577888899999


Q ss_pred             EecCCCCCeeeCCceEEEEEe-------------ecCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCccc-
Q psy8618         150 LDLNDNRPTFTSSSLLFKVSA-------------SDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESR-  215 (232)
Q Consensus       150 ~d~Nd~~P~f~~~~~~~~v~~-------------~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~-  215 (232)
                      .| |||+|.|....|.+.|.|             +|+|   ++.++|+|....+..+.|.|++.+|.|++.++||||.. 
T Consensus       206 ~d-nDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D---n~~i~Y~i~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~  281 (316)
T 3ubf_A          206 VG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLR  281 (316)
T ss_dssp             EE-SCCCCEESSSSEEEEEETTCCTTCEEEECCEECTT---CCCEEEEEEEESSCTTTEEECTTTCEEEECSCCCSSCTT
T ss_pred             Ec-CCCCCEEcCCCceEEEeCCCCCCCEEEEEEEEeCC---CCEEEEEEEcCCCCCCeEEEECCeEEEEECCcCCccccC
Confidence            99 999999999998877776             4444   45679999732267899999999999999999999997 


Q ss_pred             --cEEEEEEEEE-ECC
Q psy8618         216 --SSYEFPVVAT-DRG  228 (232)
Q Consensus       216 --~~y~l~V~a~-D~g  228 (232)
                        ..|.|.|.|+ |+|
T Consensus       282 ~~~~y~l~V~A~dd~g  297 (316)
T 3ubf_A          282 QPHVYSLIVTATEDSG  297 (316)
T ss_dssp             SCSEEEEEEEEEESSS
T ss_pred             CCceEEEEEEEEECCC
Confidence              7999999999 455

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=8.8e-45  Score=316.97  Aligned_cols=226  Identities=30%  Similarity=0.391  Sum_probs=201.7

Q ss_pred             CeEecCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCC
Q psy8618           1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDD   80 (232)
Q Consensus         1 ~i~~~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~   80 (232)
                      +|.+.++||||++..|.|++.|+|++++..++.+.|+|.|.|+|||+|.|... .|.+.|+|++++|+.++++.|+|+|.
T Consensus        59 ~l~~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~-~y~~~V~En~~~Gt~v~~v~A~D~D~  137 (559)
T 3q2w_A           59 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQ-VWNGSVPEGSKPGTYVMTVTAIDADD  137 (559)
T ss_dssp             EEEECSCCCTTTCSEEEEEEEEEETTSCEEEEEEEEEEEEECCCCCCCEESCS-EEEEEEETTCCTTCEEEECCEECSSC
T ss_pred             EEEECCccCCCCCceEEEEEEEEECCCCccceeEEEEEEEEeCCCCCCccCCC-eeEEEEeCCCCCCcEEEEEEEEcCCC
Confidence            37889999999999999999999999988899999999999999999999987 78999999999999999999999998


Q ss_pred             C--CCcEEEEEEeeCCCCC-CcccEEEeCCceEEEECc-cCCccCCCEEEEEEEEEeCCC---CCcceeEEEEEEEEecC
Q psy8618          81 G--SNATISYSILKGRDTD-GYGVFTIDPISGVIRTKS-VLDHEDRSIYRIAVAATDNGF---PSRQTVRLLRVEVLDLN  153 (232)
Q Consensus        81 ~--~~~~v~y~i~~~~~~~-~~~~f~id~~tG~i~~~~-~ld~e~~~~~~l~v~a~d~~~---~~~~~~~~v~i~v~d~N  153 (232)
                      +  .|+.++|+|.++.+.. ..++|.|++.+|.|++.+ .||||....|.|.|.|+|++.   ++++++++|.|+|.|+|
T Consensus       138 g~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~g~p~~~~s~t~~v~I~V~DvN  217 (559)
T 3q2w_A          138 PNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVN  217 (559)
T ss_dssp             TTSGGGCCEEEEEEEESCCSCTTCEEECTTTCEEEECCSCCCTTTCCEEEEEEEEEHHHHCTTTCCEEEEEEEEEEECCS
T ss_pred             CCCCceEEEEEEecCCCCCCCcceEEEeCCceEEEEEeccCCcccCCEEEEEEEEEECCCCCCCCccceEEEEEEEEeCC
Confidence            7  5889999998764321 237899999999999987 999999999999999999854   35889999999999999


Q ss_pred             CCCCeeeCCceEEEE------------EeecCCCCC--CeEEEEEEccCCCCCCcEEE----ECCceEEEEeecCCCccc
Q psy8618         154 DNRPTFTSSSLLFKV------------SASDPDCGV--NAMVNYTLGESPSRTNHFYM----KSVSGEICISQDLDFESR  215 (232)
Q Consensus       154 d~~P~f~~~~~~~~v------------~~~D~d~~~--~~~i~y~l~~~~~~~~~f~i----~~~~G~i~~~~~ld~e~~  215 (232)
                      ||+|.|....|.+.|            .++|+|.+.  ++.++|+|..+ +..+.|.|    ++.+|.|++.++||||..
T Consensus       218 Dn~P~f~~~~y~~~V~En~~g~~v~~v~a~D~D~~~~~n~~~~y~i~~g-~~~~~F~I~~~~~~~~G~i~~~~~LD~E~~  296 (559)
T 3q2w_A          218 DNPPEFTAMTFYGEVPENRVDVIVANLTVTDKDQPHTPAWNAAYRISGG-DPTGRFAILTDPNSNDGLVTVVKPIDFETN  296 (559)
T ss_dssp             CSCCEESSSEEEEEEESSCSSEEEEEEEEECCSCTTSTTTSBCCEEEES-CTTCCEEEEECTTTCEEEEEECSCCCTTTC
T ss_pred             CCCCccccccceeEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEecC-CCCCceEEEecCCCCcEEEEeCCCCCCccC
Confidence            999999988876654            457888765  45789999876 66789999    478999999999999999


Q ss_pred             cEEEEEEEEEECC
Q psy8618         216 SSYEFPVVATDRG  228 (232)
Q Consensus       216 ~~y~l~V~a~D~g  228 (232)
                      ..|.|.|.|+|+|
T Consensus       297 ~~y~l~V~A~D~~  309 (559)
T 3q2w_A          297 RMFVLTVAAENQV  309 (559)
T ss_dssp             SEEEEEEECCBSS
T ss_pred             ceEEEEEEEEcCC
Confidence            9999999999975

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=6.2e-44  Score=311.07  Aligned_cols=226  Identities=30%  Similarity=0.392  Sum_probs=204.3

Q ss_pred             CeEecCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCC
Q psy8618           1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDD   80 (232)
Q Consensus         1 ~i~~~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~   80 (232)
                      .|.+.++||||+...|.|++.|+|+++++.++.+.|+|.|.|+|||+|.|... .|.+.|+|++++|+.++++.|+|+|.
T Consensus        59 ~l~~~~~LDrE~~~~y~l~v~a~d~~~~~~~~~~~v~I~V~DvNDn~P~F~~~-~y~~~V~E~~~~Gt~v~~v~A~D~D~  137 (550)
T 3q2v_A           59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQE-VFEGSVAEGAVPGTSVMKVSATDADD  137 (550)
T ss_dssp             EEEECSCCCTTTCSEEEEEEEEEETTSCBCSCCEEEEEEEECCSCCCCCBSCS-EEEEEEETTCCTTCEEEECCBCCCSC
T ss_pred             EEEECCccCcccCCeeEEEEEEEeCCCCcccceEEEEEEEEecCCCCCccCCC-ceEEEEeCCCCCCCEEEEEEEEeCCC
Confidence            37889999999999999999999998888888899999999999999999987 78999999999999999999999999


Q ss_pred             C---CCcEEEEEEeeCCCC-CCcccEEEeCCceEEEE-CccCCccCCCEEEEEEEEEeCCCCCcceeEEEEEEEEecCCC
Q psy8618          81 G---SNATISYSILKGRDT-DGYGVFTIDPISGVIRT-KSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDN  155 (232)
Q Consensus        81 ~---~~~~v~y~i~~~~~~-~~~~~f~id~~tG~i~~-~~~ld~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d~Nd~  155 (232)
                      +   .|+.++|+|.++.+. ...++|.|++.+|.|++ .+.||||....|.|.|.|+|+|.+++++++.|.|+|.|+|||
T Consensus       138 g~~~~N~~i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~t~~v~I~V~DvNDn  217 (550)
T 3q2v_A          138 DVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDN  217 (550)
T ss_dssp             TTTCGGGCCEEEEEEEESCCSSSCSEEECTTTCEEEECSSCCCTTTCSEEEEEEEEESGGGTSCCCEEEEEEEEECCSCS
T ss_pred             CCCCcceEEEEEEecCCCCCCcCCceEEcCCCeEEEEccCCCCcccCcEEEEEEEEEcCCCCCeeEEEEEEEEecccCCC
Confidence            8   689999999877532 24578999999999987 578999999999999999999888999999999999999999


Q ss_pred             CCeeeCCceEEEEEe------------ecCCCCCCe--EEEEEEccCCCCCCcEEEE----CCceEEEEeecCCCccccE
Q psy8618         156 RPTFTSSSLLFKVSA------------SDPDCGVNA--MVNYTLGESPSRTNHFYMK----SVSGEICISQDLDFESRSS  217 (232)
Q Consensus       156 ~P~f~~~~~~~~v~~------------~D~d~~~~~--~i~y~l~~~~~~~~~f~i~----~~~G~i~~~~~ld~e~~~~  217 (232)
                      +|.|....|.++|.|            +|+|.+.++  .+.|+|..  +..+.|.|+    +.+|.|++.++||||....
T Consensus       218 ~P~F~~~~y~~~V~En~~g~~v~~v~a~D~D~~~n~~~~~~ysi~~--~~~~~F~i~~d~~~~tG~i~~~~~LD~E~~~~  295 (550)
T 3q2v_A          218 APVFNPSTYQGQVPENEVNARIATLKVTDDDAPNTPAWKAVYTVVN--DPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQ  295 (550)
T ss_dssp             CCEESSSEEEEEEESSCSSCCCEEECEECCSCTTSTTTCEEEEESS--CSSCCEEEEECTTTCCEEEEESSCCCTTTCSE
T ss_pred             CCEEecceeEEEEecCCCCCEEEEEEEEECCCCCCCcEEEEEEEEe--CCCCcEEEEecCCCccEEEEecccCCccccce
Confidence            999999888776655            677776654  45799987  678899998    7899999999999999999


Q ss_pred             EEEEEEEEECCc
Q psy8618         218 YEFPVVATDRGK  229 (232)
Q Consensus       218 y~l~V~a~D~g~  229 (232)
                      |.|.|.|+|+|.
T Consensus       296 y~l~V~a~D~~~  307 (550)
T 3q2v_A          296 YILHVRVENEEP  307 (550)
T ss_dssp             EEEEEEEEESSC
T ss_pred             EEEEEEEEeCCC
Confidence            999999999973

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=1.2e-44  Score=315.22  Aligned_cols=226  Identities=30%  Similarity=0.374  Sum_probs=203.7

Q ss_pred             CeEecCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCC
Q psy8618           1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDD   80 (232)
Q Consensus         1 ~i~~~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~   80 (232)
                      +|.++++||||.+..|.|+|.|+|+++++.++.+.|+|.|.|+|||+|.|... .|.+.|+|++++|+.++++.|+|+|.
T Consensus        65 ~l~~~~~LDrE~~~~y~l~v~A~D~~~~~~~~~~~v~I~V~DvNDn~P~F~~~-~y~~~V~En~~~gt~v~~v~A~D~D~  143 (546)
T 1l3w_A           65 WMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQD-VFRGSVREGVQPGTQVMAVSATDEDD  143 (546)
T ss_dssp             EEEECSCCCTTTCCEEEEEEEEEESSSCBCSCCEEEEEEEECCSCCCCEESSS-CEEEEEETTCCSSEEEEECCEECCSC
T ss_pred             EEEECCcCCcccCceEEEEEEEEeCCCCcccceEEEEEEEEecccCcCEecCc-eeEEEEECCCCCCCEEEEEEEEcCCC
Confidence            37889999999999999999999999888888899999999999999999987 78999999999999999999999999


Q ss_pred             C---CCcEEEEEEeeCCCC-CCcccEEEeCCceEEEEC-ccCCccCCCEEEEEEEEEeCCCCCcceeEEEEEEEEecCCC
Q psy8618          81 G---SNATISYSILKGRDT-DGYGVFTIDPISGVIRTK-SVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDN  155 (232)
Q Consensus        81 ~---~~~~v~y~i~~~~~~-~~~~~f~id~~tG~i~~~-~~ld~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d~Nd~  155 (232)
                      +   .|+.++|+|.++.+. ...++|.|++.+|.|++. +.||||....|.|.|.|+|++.+++++.+.|.|+|.|+|||
T Consensus       144 g~~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn  223 (546)
T 1l3w_A          144 NIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDN  223 (546)
T ss_dssp             CSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCC
T ss_pred             CCCCCCCEEEEEEeCCCCCcccCCcEEEeCCCceEEEeccCCCcccCceEEEEEEEEECCCCCcceEEEEEEEEeecCCC
Confidence            8   688999999876421 145799999999999985 78999999999999999999988899999999999999999


Q ss_pred             CCeeeCCceEEEEE------------eecCC--CCCCeEEEEEEccCCCCCCcEEEE----CCceEEEEeecCCCccccE
Q psy8618         156 RPTFTSSSLLFKVS------------ASDPD--CGVNAMVNYTLGESPSRTNHFYMK----SVSGEICISQDLDFESRSS  217 (232)
Q Consensus       156 ~P~f~~~~~~~~v~------------~~D~d--~~~~~~i~y~l~~~~~~~~~f~i~----~~~G~i~~~~~ld~e~~~~  217 (232)
                      +|.|....|.++|.            ++|+|  .+.++.++|+|..  +..+.|.|+    ..+|.|++.++||||....
T Consensus       224 ~P~F~~~~y~~~V~En~~gt~v~~v~A~D~D~~~g~n~~v~y~i~~--~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~  301 (546)
T 1l3w_A          224 APIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRV--NEGGFFNITTDPESNQGILTTAKGLDFELRKQ  301 (546)
T ss_dssp             CCCBSCSEEEEEEESSSCCCEEEEECBCCCSCTTSTTSCEECCBSC--CTTSCEEEEECTTTCCEEEEESSCCCCSSCCC
T ss_pred             CCccccccceEEEEeCCCCCEEEEEEEEeCCCCCCCCcEEEEEEEe--CCCceEEEEecCCCCeEEEEECccCCcccccE
Confidence            99999887766554            47888  5678889999986  567899996    3689999999999999999


Q ss_pred             EEEEEEEEECCc
Q psy8618         218 YEFPVVATDRGK  229 (232)
Q Consensus       218 y~l~V~a~D~g~  229 (232)
                      |.|.|.|+|+|.
T Consensus       302 y~l~V~a~D~~~  313 (546)
T 1l3w_A          302 YVLQITVENAEP  313 (546)
T ss_dssp             EEEEECCEESSC
T ss_pred             EEEEEEEEECCC
Confidence            999999999873

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=1.2e-42  Score=302.95  Aligned_cols=222  Identities=25%  Similarity=0.369  Sum_probs=200.2

Q ss_pred             eEe-cCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCC
Q psy8618           2 IST-REPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDD   80 (232)
Q Consensus         2 i~~-~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~   80 (232)
                      |.+ .++||||.+..|.|+|.|+|+|++++++.+.|+|.|.|+|||+|+|... .|.+.|+|+ ++|+.++++.|+|+|.
T Consensus       172 i~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~t~~v~I~V~DvNDn~P~F~~~-~y~~~V~En-~~g~~v~~v~a~D~D~  249 (550)
T 3q2v_A          172 ISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPS-TYQGQVPEN-EVNARIATLKVTDDDA  249 (550)
T ss_dssp             EEECSSCCCTTTCSEEEEEEEEESGGGTSCCCEEEEEEEEECCSCSCCEESSS-EEEEEEESS-CSSCCCEEECEECCSC
T ss_pred             EEEccCCCCcccCcEEEEEEEEEcCCCCCeeEEEEEEEEecccCCCCCEEecc-eeEEEEecC-CCCCEEEEEEEEECCC
Confidence            444 5899999999999999999998888999999999999999999999987 789999999 9999999999999999


Q ss_pred             CCCc--EEEEEEeeCCCCCCcccEEEe----CCceEEEECccCCccCCCEEEEEEEEEeCCC---CCcceeEEEEEEEEe
Q psy8618          81 GSNA--TISYSILKGRDTDGYGVFTID----PISGVIRTKSVLDHEDRSIYRIAVAATDNGF---PSRQTVRLLRVEVLD  151 (232)
Q Consensus        81 ~~~~--~v~y~i~~~~~~~~~~~f~id----~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~~---~~~~~~~~v~i~v~d  151 (232)
                      +.++  .++|+|..    +..++|.|+    +.+|.|++.+.||||....|.|.|.|+|++.   +.+++++.|.|+|.|
T Consensus       250 ~~n~~~~~~ysi~~----~~~~~F~i~~d~~~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~~~~~~v~I~V~D  325 (550)
T 3q2v_A          250 PNTPAWKAVYTVVN----DPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVD  325 (550)
T ss_dssp             TTSTTTCEEEEESS----CSSCCEEEEECTTTCCEEEEESSCCCTTTCSEEEEEEEEEESSCCCSSCCCEEEEEEEEEEC
T ss_pred             CCCCcEEEEEEEEe----CCCCcEEEEecCCCccEEEEecccCCccccceEEEEEEEEeCCCCCCCccceEEEEEEEEEe
Confidence            8766  46799965    456789998    7899999999999999999999999999873   457889999999999


Q ss_pred             cCCCCCeeeCCceEEEE-------------EeecCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCccc---
Q psy8618         152 LNDNRPTFTSSSLLFKV-------------SASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESR---  215 (232)
Q Consensus       152 ~Nd~~P~f~~~~~~~~v-------------~~~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~---  215 (232)
                      +|| +|.|....|.+.|             .++|+|.+.++.++|+|.+  +....|.|++.+|.|++.+.||||..   
T Consensus       326 vND-~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n~~i~y~i~~--~~~~~f~id~~tG~i~~~~~lDrE~~~~~  402 (550)
T 3q2v_A          326 VNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWR--DTANWLEINPETGAIFTRAEMDREDAEHV  402 (550)
T ss_dssp             CCC-CCEESSSSCEEEEETTCCSSCEEEECCEECCCCSTTCCCEEEEEE--CTTCCEEECTTTCEEEECSCCCTTCTTTC
T ss_pred             cCC-CCeEcCcceEEEEecCCCCCCEEEEEeCCCCCCCCCCCEEEEEec--CCCCcEEEeCCCcEEEECCccCccccccc
Confidence            999 9999988776554             4589999889999999976  45789999999999999999999998   


Q ss_pred             --cEEEEEEEEEECCccCC
Q psy8618         216 --SSYEFPVVATDRGKETQ  232 (232)
Q Consensus       216 --~~y~l~V~a~D~g~~~q  232 (232)
                        ..|.|.|.|+|+|.|++
T Consensus       403 ~~~~y~l~V~A~D~g~p~~  421 (550)
T 3q2v_A          403 KNSTYVALIIATDDGSPIA  421 (550)
T ss_dssp             CSSEEEEEEEEECCSSSCC
T ss_pred             CCCEEEEEEEEEeCCCCcc
Confidence              89999999999999864

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=3e-43  Score=319.89  Aligned_cols=226  Identities=29%  Similarity=0.372  Sum_probs=203.9

Q ss_pred             CeEecCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCC
Q psy8618           1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDD   80 (232)
Q Consensus         1 ~i~~~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~   80 (232)
                      +|.+.++||||.+..|.|+|.|+|+++++.++.+.|+|.|.|+|||+|.|... .|.+.|+|++++|+.++++.|+|+|.
T Consensus       214 ~l~~~~~LDrE~~~~y~l~v~A~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~-~y~~~V~En~~~Gt~V~~v~AtD~D~  292 (880)
T 1q55_A          214 WMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQD-VFRGSVREGVQPGTQVMAVSATDEDD  292 (880)
T ss_dssp             EEEECSCCCTTTCCEEEEEEEEEESSSCBCSCCEEEEEEEECCSCCCCEESSS-CEEEEEETTCCSSEEEEECCEECCSC
T ss_pred             EEEECCccCccccCccEEEEEEEECCCCceeeeEEEEEEEEecCCCCCCccCC-cEEEEEeCCCCCCceeEEEEEEcCCC
Confidence            37889999999999999999999999888888999999999999999999988 78999999999999999999999999


Q ss_pred             C---CCcEEEEEEeeCCCC-CCcccEEEeCCceEEEEC-ccCCccCCCEEEEEEEEEeCCCCCcceeEEEEEEEEecCCC
Q psy8618          81 G---SNATISYSILKGRDT-DGYGVFTIDPISGVIRTK-SVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDN  155 (232)
Q Consensus        81 ~---~~~~v~y~i~~~~~~-~~~~~f~id~~tG~i~~~-~~ld~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d~Nd~  155 (232)
                      +   .|+.++|+|.++.+. ...++|.|++.+|.|++. +.||||....|.|.|.|+|++.++++++++|.|+|.|+|||
T Consensus       293 g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn  372 (880)
T 1q55_A          293 NIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDN  372 (880)
T ss_dssp             CSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCC
T ss_pred             CCCCcCcEEEEEEcCCCCCcccCCeEEEccCCccEEEecccCCHHHcceeEEEEEEEECCCCCccceeEEEEEEEeccCC
Confidence            8   689999999876421 146799999999999985 78999999999999999999888899999999999999999


Q ss_pred             CCeeeCCceEEEEE------------eecCC--CCCCeEEEEEEccCCCCCCcEEEE--C--CceEEEEeecCCCccccE
Q psy8618         156 RPTFTSSSLLFKVS------------ASDPD--CGVNAMVNYTLGESPSRTNHFYMK--S--VSGEICISQDLDFESRSS  217 (232)
Q Consensus       156 ~P~f~~~~~~~~v~------------~~D~d--~~~~~~i~y~l~~~~~~~~~f~i~--~--~~G~i~~~~~ld~e~~~~  217 (232)
                      +|.|....|.++|.            ++|+|  .+.++.++|+|..  +..+.|.|+  +  .+|.|++.++||||....
T Consensus       373 ~P~F~~~~y~~~V~En~~gt~V~~v~A~D~D~~~g~n~~v~Ysi~~--~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~  450 (880)
T 1q55_A          373 APIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRV--NEGGFFNITTDPESNQGILTTAKGLDFELRKQ  450 (880)
T ss_dssp             CCCBSCSEEEEEEESSSCCCEEEEECBCCCSCTTSTTSCEECCBSC--CTTSCEEEEECTTTCCEEEEESSCCCCSSCCC
T ss_pred             CCCccccceEEEeecCCCCcEEEEEEEECCCCCCCCCceEEEEEec--CCCceEEEEecCCCceEEEecccCCCcccCCc
Confidence            99999888766555            47888  5678889999986  567899996  2  689999999999999999


Q ss_pred             EEEEEEEEECCc
Q psy8618         218 YEFPVVATDRGK  229 (232)
Q Consensus       218 y~l~V~a~D~g~  229 (232)
                      |.|.|.|+|+|.
T Consensus       451 y~l~V~A~D~~~  462 (880)
T 1q55_A          451 YVLQITVENAEP  462 (880)
T ss_dssp             EEEEECCEESSC
T ss_pred             EEEEEEEEECCC
Confidence            999999999874

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=2.2e-42  Score=301.88  Aligned_cols=223  Identities=29%  Similarity=0.372  Sum_probs=199.6

Q ss_pred             eEecC-CCCcCCCCeEEEEEEEEeCCC---CCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEe
Q psy8618           2 ISTRE-PLDREARSSHELVAEARDQGS---PPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVD   77 (232)
Q Consensus         2 i~~~~-~lD~E~~~~~~l~v~a~d~~~---~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D   77 (232)
                      |.+.+ .||||....|.|+|.|+|+++   +++++++.|+|.|.|+|||+|+|... .|.+.|+|+. +|+.++.+.|+|
T Consensus       171 i~~~~~~LD~E~~~~y~l~V~A~D~~g~p~~~~s~t~~v~I~V~DvNDn~P~f~~~-~y~~~V~En~-~g~~v~~v~a~D  248 (559)
T 3q2w_A          171 IITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAM-TFYGEVPENR-VDVIVANLTVTD  248 (559)
T ss_dssp             EEECCSCCCTTTCCEEEEEEEEEHHHHCTTTCCEEEEEEEEEEECCSCSCCEESSS-EEEEEEESSC-SSEEEEEEEEEC
T ss_pred             EEEEeccCCcccCCEEEEEEEEEECCCCCCCCccceEEEEEEEEeCCCCCCccccc-cceeEecCCC-CCcEEEEEEEEc
Confidence            56666 999999999999999999855   35889999999999999999999988 7899999997 899999999999


Q ss_pred             CCCCC--CcEEEEEEeeCCCCCCcccEEE----eCCceEEEECccCCccCCCEEEEEEEEEeCC------CCCcceeEEE
Q psy8618          78 KDDGS--NATISYSILKGRDTDGYGVFTI----DPISGVIRTKSVLDHEDRSIYRIAVAATDNG------FPSRQTVRLL  145 (232)
Q Consensus        78 ~D~~~--~~~v~y~i~~~~~~~~~~~f~i----d~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~------~~~~~~~~~v  145 (232)
                      +|.+.  ++.++|+|..+   +..++|.|    ++.+|.|++.++||||....|.|.|.|+|++      .++++++++|
T Consensus       249 ~D~~~~~n~~~~y~i~~g---~~~~~F~I~~~~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~g~~~~~~s~~~v  325 (559)
T 3q2w_A          249 KDQPHTPAWNAAYRISGG---DPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATV  325 (559)
T ss_dssp             CSCTTSTTTSBCCEEEES---CTTCCEEEEECTTTCEEEEEECSCCCTTTCSEEEEEEECCBSSCCCTTCCCCGGGEEEE
T ss_pred             CCCCCCCceeEEEEEecC---CCCCceEEEecCCCCcEEEEeCCCCCCccCceEEEEEEEEcCCccccCCCCCCceEEEE
Confidence            99875  56799999887   66789999    5789999999999999999999999999974      2568899999


Q ss_pred             EEEEEecCCCCCeeeCCceEEEE-------------EeecCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCC
Q psy8618         146 RVEVLDLNDNRPTFTSSSLLFKV-------------SASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDF  212 (232)
Q Consensus       146 ~i~v~d~Nd~~P~f~~~~~~~~v-------------~~~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~  212 (232)
                      .|+|.|+|| +|.|....|.+.|             .++|+|.+.++.++|+|..  +...+|.|++.+|.|++.+.|||
T Consensus       326 ~I~V~DvND-~P~f~~~~~~~~v~En~~~g~~v~~v~A~D~D~g~n~~i~Ysi~~--~~~~~f~Id~~tG~i~~~~~lDr  402 (559)
T 3q2w_A          326 SVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLS--DPANWLKIDPVNGQITTIAVLDR  402 (559)
T ss_dssp             EEEEECCCC-CCEESSSEEEEEEESCCCTTCEEEECCEECSCSSSCCCEEEEEEE--CTTCCEEECTTTCEEEESSCCCS
T ss_pred             EEEEEeCCC-CCcccccceEEEEeCCCCCCCEEEEEEEECCCCCCCCceEEEEcc--CCccceEecCCceEEEEccccCc
Confidence            999999999 6999888776554             4589999989999999986  45689999999999999999999


Q ss_pred             ccc----cEEEEEEEEEECCccCC
Q psy8618         213 ESR----SSYEFPVVATDRGKETQ  232 (232)
Q Consensus       213 e~~----~~y~l~V~a~D~g~~~q  232 (232)
                      |..    ..|.|.|.|+|+|.|++
T Consensus       403 E~~~~~~~~y~l~V~A~D~g~p~~  426 (559)
T 3q2w_A          403 ESPNVKNNIYNATFLASDNGIPPM  426 (559)
T ss_dssp             SSTTSCSSEEEEEEEEEECSSSCC
T ss_pred             ccccccCCEEEEEEEEEcCCCCcc
Confidence            975    89999999999999864

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=7.4e-43  Score=303.94  Aligned_cols=222  Identities=27%  Similarity=0.330  Sum_probs=200.2

Q ss_pred             eEe-cCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCC-
Q psy8618           2 IST-REPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKD-   79 (232)
Q Consensus         2 i~~-~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D-   79 (232)
                      |.+ .++||||....|.|+|.|+|+|++++++.+.|+|.|.|+|||+|.|... .|.+.|+|+ ++|+.++++.|+|+| 
T Consensus       178 i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~-~y~~~V~En-~~gt~v~~v~A~D~D~  255 (546)
T 1l3w_A          178 ISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPK-TYTALVPEN-EIGFEVQRLSVTDLDM  255 (546)
T ss_dssp             EEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCS-EEEEEEESS-SCCCEEEEECBCCCSC
T ss_pred             EEEeccCCCcccCceEEEEEEEEECCCCCcceEEEEEEEEeecCCCCCccccc-cceEEEEeC-CCCCEEEEEEEEeCCC
Confidence            555 4789999999999999999999888999999999999999999999987 789999999 999999999999999 


Q ss_pred             -CCCCcEEEEEEeeCCCCCCcccEEEe----CCceEEEECccCCccCCCEEEEEEEEEeCCC---CCcceeEEEEEEEEe
Q psy8618          80 -DGSNATISYSILKGRDTDGYGVFTID----PISGVIRTKSVLDHEDRSIYRIAVAATDNGF---PSRQTVRLLRVEVLD  151 (232)
Q Consensus        80 -~~~~~~v~y~i~~~~~~~~~~~f~id----~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~~---~~~~~~~~v~i~v~d  151 (232)
                       .+.++.++|+|.+    +..++|.|+    ..+|.|++.++||||....|.|.|.|+|++.   +.++++++|.|+|.|
T Consensus       256 ~~g~n~~v~y~i~~----~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~D  331 (546)
T 1l3w_A          256 PGTPAWQAVYKIRV----NEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED  331 (546)
T ss_dssp             TTSTTSCEECCBSC----CTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEEC
T ss_pred             CCCCCcEEEEEEEe----CCCceEEEEecCCCCeEEEEECccCCcccccEEEEEEEEEECCCCCCCCcceeEEEEEEEEc
Confidence             6788999999965    345789995    2689999999999999999999999999863   467889999999999


Q ss_pred             cCCCCCeeeCCce-------------EEEEEeecCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCccc---
Q psy8618         152 LNDNRPTFTSSSL-------------LFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESR---  215 (232)
Q Consensus       152 ~Nd~~P~f~~~~~-------------~~~v~~~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~---  215 (232)
                      +|| +|.|....|             ..+|.++|+|.+.++.++|+|.+  +..++|.|++.+|.|++.+.||||..   
T Consensus       332 vND-~P~f~~~~y~~~V~En~~~g~~v~~v~A~D~D~g~n~~i~ysi~~--~~~~~F~Id~~tG~i~~~~~lD~E~~~~~  408 (546)
T 1l3w_A          332 VNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN--DPARWLTVNKDNGIVTGNGNLDRESEYVK  408 (546)
T ss_dssp             CCC-CCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECC--CSSCCCEEETTTTEEEECSCCCTTSSSCC
T ss_pred             CCC-CCcEecceEEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEECC--CCCCcEEEeCCcEEEEECCccCCccccCC
Confidence            999 999987654             55677899999999999999987  45689999999999999999999987   


Q ss_pred             -cEEEEEEEEEECCccCC
Q psy8618         216 -SSYEFPVVATDRGKETQ  232 (232)
Q Consensus       216 -~~y~l~V~a~D~g~~~q  232 (232)
                       ..|.|.|.|+|+|.|++
T Consensus       409 ~~~y~l~V~a~D~g~p~~  426 (546)
T 1l3w_A          409 NNTYTVIMLVTDDGVSVG  426 (546)
T ss_dssp             SSCCEEEEEEEECSSSCC
T ss_pred             CCEEEEEEEEEECCCCCc
Confidence             89999999999998763

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=7.3e-42  Score=289.13  Aligned_cols=217  Identities=29%  Similarity=0.441  Sum_probs=192.0

Q ss_pred             eEecCCCCcCCCCeEEEEEEEEeCCCC----CceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEe
Q psy8618           2 ISTREPLDREARSSHELVAEARDQGSP----PRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVD   77 (232)
Q Consensus         2 i~~~~~lD~E~~~~~~l~v~a~d~~~~----~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D   77 (232)
                      |.+.+.||||....|.|+|.|+|++++    ++++.+.++|.|.| |||+|.|... .|.+.|+|+.++|+.|+++.|+|
T Consensus       168 i~~~~~ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~d-ndn~P~F~~~-~y~~~v~En~~~gt~v~~v~A~D  245 (419)
T 3ubh_A          168 VRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMP-SYEAEIPENQKKDSDIISIKAKS  245 (419)
T ss_dssp             EEECSSSCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEE-SCCCCEESSS-CEEEEEETTCCTTCEEEECCEEC
T ss_pred             EEEecccccccccEEEEEEEEEECCCCccCcccccceEEEEEEEC-CCCCCceecC-eeEEEecCCCCCCcEEEEEEEec
Confidence            678889999999999999999998764    56788889999999 9999999988 78999999999999999999999


Q ss_pred             CCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCC---EEEEEEEEEeCCCCCcceeEEEEEEEEecCC
Q psy8618          78 KDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRS---IYRIAVAATDNGFPSRQTVRLLRVEVLDLND  154 (232)
Q Consensus        78 ~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~---~~~l~v~a~d~~~~~~~~~~~v~i~v~d~Nd  154 (232)
                      +|   ++.++|+|....  +..++|.|++.+|.|++.++||||...   .|.|.|.|+|.+ +++++.+.|.|+|.|+||
T Consensus       246 ~d---n~~i~Ysi~~~~--~~~~~F~I~~~tG~i~~~~~LD~E~~~~~~~y~l~V~a~dd~-~~~s~~~~v~I~V~DvND  319 (419)
T 3ubh_A          246 FA---DREIRYTLKAQG--QGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVND  319 (419)
T ss_dssp             SS---CCCCEEEEEESS--SCCSSEEECTTTCEEEECSCCCTTCTTSCSEEEEEEEEECTT-TSCEEEEEEEEEEECCCC
T ss_pred             CC---CCceEEEEecCC--CCCCcEEEECCCCEEEECcccCccccccccEEEEEEEEEeCC-CCcEEEEEEEEEEEccCC
Confidence            86   667999997421  456899999999999999999999865   799999999754 367888999999999999


Q ss_pred             CCCeeeCCceEE-E-------------EEeecCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCcc-ccEEE
Q psy8618         155 NRPTFTSSSLLF-K-------------VSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFES-RSSYE  219 (232)
Q Consensus       155 ~~P~f~~~~~~~-~-------------v~~~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~-~~~y~  219 (232)
                      |+|.|....|.+ .             |.++|+|.+.++.++|+|.+     ++|.|++ +|.|.+.+.||||. ...|.
T Consensus       320 n~P~f~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v~Y~i~~-----~~F~Id~-~G~i~~~~~ld~E~~~~~y~  393 (419)
T 3ubh_A          320 NAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSD-----DHFAVDS-NGIIVNNKQLDADNNNAYYE  393 (419)
T ss_dssp             CCCEESSSEEEEEEEETTCCTTCEEEECCEECSSCGGGGCEEEEESC-----TTEEECT-TCEEEECSCSSSSCTTCEEE
T ss_pred             CCCcccCCcceeEEecCCCCCCCEEEEEEEEeCCCCCCCEEEEEEcC-----CcEEECC-CeEEEECcccCcccCCceEE
Confidence            999999887754 3             45589999999999999974     3799997 99999999999998 67999


Q ss_pred             EEEEEEECCccCC
Q psy8618         220 FPVVATDRGKETQ  232 (232)
Q Consensus       220 l~V~a~D~g~~~q  232 (232)
                      |.|.|+|+|.|++
T Consensus       394 l~V~a~D~G~p~~  406 (419)
T 3ubh_A          394 FIVTAKDKGEPPK  406 (419)
T ss_dssp             EEEEEEECCSSCC
T ss_pred             EEEEEEECCcCCc
Confidence            9999999999974

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=2.9e-41  Score=285.42  Aligned_cols=219  Identities=25%  Similarity=0.327  Sum_probs=189.7

Q ss_pred             eEecCCCCcCCC---CeEEEEEEEEeCCCC---CceeEEEEEEEEEeCCCCCCeecCCCc-eEEEEecCCCCCcEEEEEE
Q psy8618           2 ISTREPLDREAR---SSHELVAEARDQGSP---PRSSRVAVKISVTDVNDNAPELVDPQE-DVISVREEQPPGTEVVRAR   74 (232)
Q Consensus         2 i~~~~~lD~E~~---~~~~l~v~a~d~~~~---~~~~~~~v~v~V~dvNd~~P~f~~~~~-~~~~v~E~~~~g~~v~~v~   74 (232)
                      |.+.++||||+.   ..|.|.|.|+|.+.+   ..++.+.|+|.|.|+|||+|.|..... |...|+|++++|+.++++.
T Consensus        57 i~~~~~LD~E~~~~~~~~~~~V~a~d~g~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~  136 (419)
T 3ubh_A           57 VRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQ  136 (419)
T ss_dssp             EEESSCCCGGGSCTTCEEEEEEEEEC--CCSSSCCEEEEEEEEEEECCCCSCCEECCSSSSCEEEECTTCCTTCEEEECC
T ss_pred             EEECCccCccccCccceEEEEEEEEeCCCCCCCCCcceEEEEEEEEECCCCCCcccCCCCcEEEEEeCCCCCCCEEEEEE
Confidence            788999999998   799999999998754   577889999999999999999998632 6899999999999999999


Q ss_pred             EEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeCCCC----CcceeEEEEEEEE
Q psy8618          75 AVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFP----SRQTVRLLRVEVL  150 (232)
Q Consensus        75 a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~~~----~~~~~~~v~i~v~  150 (232)
                      |+|+|.+.+  ++|+|..+   ...++|.|++.+|.|++.+.+|+|....|.|.|.|+|++.+    .+++++.+.|.|.
T Consensus       137 A~D~D~g~n--~~y~i~~~---~~~~~F~I~~~tG~i~~~~~ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~  211 (419)
T 3ubh_A          137 ARDPDTDHN--IHYFIVRD---RTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIV  211 (419)
T ss_dssp             EECSSTTCC--EEEEEEEE---SSSSCEEECTTTCEEEECSSSCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEE
T ss_pred             EECCCCCce--eEEEEEeC---CCCCeEEEeCCceEEEEecccccccccEEEEEEEEEECCCCccCcccccceEEEEEEE
Confidence            999998776  89999877   55689999999999999999999999999999999998754    4677788999999


Q ss_pred             ecCCCCCeeeCCceEEEEEeecCCCCC-------------CeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCcccc-
Q psy8618         151 DLNDNRPTFTSSSLLFKVSASDPDCGV-------------NAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRS-  216 (232)
Q Consensus       151 d~Nd~~P~f~~~~~~~~v~~~D~d~~~-------------~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~-  216 (232)
                      | |||+|.|....|.++|.|   +.++             ++.++|+|....+..+.|.|++.+|.|++.++||||... 
T Consensus       212 d-ndn~P~F~~~~y~~~v~E---n~~~gt~v~~v~A~D~dn~~i~Ysi~~~~~~~~~F~I~~~tG~i~~~~~LD~E~~~~  287 (419)
T 3ubh_A          212 G-GKRAPQFYMPSYEAEIPE---NQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQ  287 (419)
T ss_dssp             E-SCCCCEESSSCEEEEEET---TCCTTCEEEECCEECSSCCCCEEEEEESSSCCSSEEECTTTCEEEECSCCCTTCTTS
T ss_pred             C-CCCCCceecCeeEEEecC---CCCCCcEEEEEEEecCCCCceEEEEecCCCCCCcEEEECCCCEEEECcccCcccccc
Confidence            9 999999999999888877   4433             445699997433667899999999999999999999865 


Q ss_pred             --EEEEEEEEEECCc
Q psy8618         217 --SYEFPVVATDRGK  229 (232)
Q Consensus       217 --~y~l~V~a~D~g~  229 (232)
                        .|.|.|.|+|.+.
T Consensus       288 ~~~y~l~V~a~dd~~  302 (419)
T 3ubh_A          288 PHVYSLIVTATEDSG  302 (419)
T ss_dssp             CSEEEEEEEEECTTT
T ss_pred             ccEEEEEEEEEeCCC
Confidence              7999999997543

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=3.2e-41  Score=306.65  Aligned_cols=222  Identities=27%  Similarity=0.339  Sum_probs=200.2

Q ss_pred             eEec-CCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCC-
Q psy8618           2 ISTR-EPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKD-   79 (232)
Q Consensus         2 i~~~-~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D-   79 (232)
                      |.+. +.||||....|.|+|.|+|++++++++.+.|+|.|.|+|||+|+|... .|.+.|+|+ ++|+.|+++.|+|+| 
T Consensus       327 I~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~-~y~~~V~En-~~gt~V~~v~A~D~D~  404 (880)
T 1q55_A          327 ISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPK-TYTALVPEN-EIGFEVQRLSVTDLDM  404 (880)
T ss_dssp             EEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCS-EEEEEEESS-SCCCEEEEECBCCCSC
T ss_pred             EEEecccCCHHHcceeEEEEEEEECCCCCccceeEEEEEEEeccCCCCCcccc-ceEEEeecC-CCCcEEEEEEEECCCC
Confidence            5554 789999999999999999999888999999999999999999999987 789999999 999999999999999 


Q ss_pred             -CCCCcEEEEEEeeCCCCCCcccEEEe--C--CceEEEECccCCccCCCEEEEEEEEEeCCC---CCcceeEEEEEEEEe
Q psy8618          80 -DGSNATISYSILKGRDTDGYGVFTID--P--ISGVIRTKSVLDHEDRSIYRIAVAATDNGF---PSRQTVRLLRVEVLD  151 (232)
Q Consensus        80 -~~~~~~v~y~i~~~~~~~~~~~f~id--~--~tG~i~~~~~ld~e~~~~~~l~v~a~d~~~---~~~~~~~~v~i~v~d  151 (232)
                       .+.|+.++|+|.+    +..++|.|+  +  .+|.|++.++||||....|.|.|.|+|++.   +.++++++|+|+|.|
T Consensus       405 ~~g~n~~v~Ysi~~----~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~~~~sst~tV~I~V~D  480 (880)
T 1q55_A          405 PGTPAWQAVYKIRV----NEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED  480 (880)
T ss_dssp             TTSTTSCEECCBSC----CTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEEC
T ss_pred             CCCCCceEEEEEec----CCCceEEEEecCCCceEEEecccCCCcccCCcEEEEEEEEECCCCCCCCcceeEEEEEEEEe
Confidence             6778999999965    346789995  3  679999999999999999999999999873   467889999999999


Q ss_pred             cCCCCCeeeCCce-------------EEEEEeecCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCccc---
Q psy8618         152 LNDNRPTFTSSSL-------------LFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESR---  215 (232)
Q Consensus       152 ~Nd~~P~f~~~~~-------------~~~v~~~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~---  215 (232)
                      +|| +|.|....|             ..+|.++|+|.+.++.++|+|..  +..++|.|++.+|.|++.+.||||..   
T Consensus       481 vND-~P~f~~~~y~~~V~En~~~Gt~V~~v~A~D~D~g~n~~v~Ysi~~--~~~~~F~Id~~tG~I~~~~~LDrE~~~~~  557 (880)
T 1q55_A          481 VNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN--DPARWLTVNKDNGIVTGNGNLDRESEYVK  557 (880)
T ss_dssp             CCC-CCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECC--CSSCCCEEETTTTEEEECSCCCTTSSSCC
T ss_pred             CCC-CCEEecCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcEEEEECC--CCCCCEEEeCCccEEEECCccCcccccCC
Confidence            999 999987655             45677899999999999999987  45789999999999999999999987   


Q ss_pred             -cEEEEEEEEEECCccCC
Q psy8618         216 -SSYEFPVVATDRGKETQ  232 (232)
Q Consensus       216 -~~y~l~V~a~D~g~~~q  232 (232)
                       ..|+|.|.|+|+|.|++
T Consensus       558 ~~~y~l~V~A~D~g~p~~  575 (880)
T 1q55_A          558 NNTYTVIMLVTDDGVSVG  575 (880)
T ss_dssp             SSCCEEEEEEEECSSSCC
T ss_pred             CCEEEEEEEEEECCCCCc
Confidence             89999999999998763

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=100.00  E-value=1.9e-36  Score=233.69  Aligned_cols=152  Identities=30%  Similarity=0.483  Sum_probs=134.6

Q ss_pred             CeEecCCCCcCCCCeEEEEEEEEeCCC-CCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCC
Q psy8618           1 EISTREPLDREARSSHELVAEARDQGS-PPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKD   79 (232)
Q Consensus         1 ~i~~~~~lD~E~~~~~~l~v~a~d~~~-~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D   79 (232)
                      +|.+.++||||.+..|.|+|.|+|+++ +++++.+.|+|.|.|+|||+|.|... .|.+.|+|+.++|+.|+++.|+|+|
T Consensus        57 ~i~~~~~LDrE~~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~-~y~~~v~E~~~~Gt~v~~v~A~D~D  135 (215)
T 2a4e_A           57 NIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHE-IYHANVPERSNVGTSVIQVTASDAD  135 (215)
T ss_dssp             EEEECSCCCTTTCSEEEEEEEEEETTTCCEEEEEEEEEEEEECCCCCCCEESSS-SEEEEEETTCCTTCEEEECCEECSS
T ss_pred             EEEECCccCCccCCEEEEEEEEEECCCCCcccccEEEEEEEeeCCCCCCCccCC-ceEEEEECCCCCCCEEEEEEEEECC
Confidence            378899999999999999999999875 56788999999999999999999987 7899999999999999999999999


Q ss_pred             C---CCCcEEEEEEeeCCCCCCcccEEEeCCceEEEEC-ccCCccCCCEEEEEEEEEeCCCC--CcceeEEEEEEEEecC
Q psy8618          80 D---GSNATISYSILKGRDTDGYGVFTIDPISGVIRTK-SVLDHEDRSIYRIAVAATDNGFP--SRQTVRLLRVEVLDLN  153 (232)
Q Consensus        80 ~---~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~-~~ld~e~~~~~~l~v~a~d~~~~--~~~~~~~v~i~v~d~N  153 (232)
                      .   |.|+.++|+|..+.     .+|.|++.+|.|++. +.||||....|.|.|.|+|+|.|  ++++++.|.|+|.|+|
T Consensus       136 ~~~~G~n~~i~Y~i~~~~-----~~F~Id~~tG~I~~~~~~LD~E~~~~y~l~V~A~D~g~~~~~~s~~~~v~I~V~DvN  210 (215)
T 2a4e_A          136 DPTYGNSAKLVYSILEGQ-----PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDY  210 (215)
T ss_dssp             CTTTCSSSCCEEEEEEST-----TTEEECTTTCEEEECSSCCCSSSCSEEEEEEEEETTTTCTTCCEEEEEEEEEEEC--
T ss_pred             CCCCCCceEEEEEEeCCC-----CcEEEeCCccEEEEcccCCCcccCCEEEEEEEEEECCCCCCCceeEEEEEEEEEECC
Confidence            7   77889999998762     479999999999999 99999999999999999999876  5889999999999999


Q ss_pred             CCCCe
Q psy8618         154 DNRPT  158 (232)
Q Consensus       154 d~~P~  158 (232)
                      ||+|+
T Consensus       211 Dn~P~  215 (215)
T 2a4e_A          211 KDDDK  215 (215)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            99995

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=100.00  E-value=1.3e-36  Score=234.34  Aligned_cols=172  Identities=27%  Similarity=0.479  Sum_probs=153.4

Q ss_pred             CCCCeecCCCceE--EEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCC
Q psy8618          45 DNAPELVDPQEDV--ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDR  122 (232)
Q Consensus        45 d~~P~f~~~~~~~--~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~  122 (232)
                      |++|.|... .|.  +.|+|++++|+.++++.|+|+|.   +.++|+|.++   +..++|.|++.+|.|++.+.||||..
T Consensus         3 n~~P~F~~~-~y~~~~~V~E~~~~Gt~v~~v~A~D~D~---~~~~y~i~~~---~~~~~F~Id~~tG~i~~~~~LD~E~~   75 (210)
T 3mvs_A            3 NRLPFFTNH-FFDTYLLISEDTPVGSSVTQLLARDMDN---DPLVFGVSGE---EASRFFAVEPDTGVVWLRQPLDRETK   75 (210)
T ss_dssp             CCCCEECCG-GGTSCEEEETTCCTTCEEEECCEECTTC---CCCEEEEESH---HHHHHEEECTTTCEEEESSCCCTTTC
T ss_pred             CCCCccCCC-ccceEEEEeCCCCCCCEEEEEEEEeCCC---CcEEEEEeCC---CCCCcEEEeCCCCEEEECCccCCccc
Confidence            459999987 565  79999999999999999999994   3589999655   45689999999999999999999999


Q ss_pred             CEEEEEEEEEeCCCCCcceeEEEEEEEEecCCCCCeeeCCceEEEEE-------------eecCCCCCCeEEEEEEccCC
Q psy8618         123 SIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVS-------------ASDPDCGVNAMVNYTLGESP  189 (232)
Q Consensus       123 ~~~~l~v~a~d~~~~~~~~~~~v~i~v~d~Nd~~P~f~~~~~~~~v~-------------~~D~d~~~~~~i~y~l~~~~  189 (232)
                      ..|.|.|.|+|++.   ...+.|.|+|.|+|||+|.|....|.+.|.             ++|+|.+.++.++|+|..+ 
T Consensus        76 ~~y~l~v~a~D~~~---~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v~Y~i~~~-  151 (210)
T 3mvs_A           76 SEFTVEFSVSDHQG---VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPP-  151 (210)
T ss_dssp             CEEEEEEEEECSSC---EEEEEEEEEEECCCCCCCEECSCSEEEEEETTCCTTCEEEECCEECCSSGGGGCEEEEESSC-
T ss_pred             ceEEEEEEEEeCCC---CEEEEEEEEEEeCCCCCCcCCCceEEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEeCC-
Confidence            99999999999864   356789999999999999999988766655             4899988888999999853 


Q ss_pred             CCCCcEEEECCceEEEEeecCCCccccEEEEEEEEEECCc
Q psy8618         190 SRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGK  229 (232)
Q Consensus       190 ~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a~D~g~  229 (232)
                        .+.|.|++.+|.|++.++||||....|.|.|.|+|+|.
T Consensus       152 --~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~g~  189 (210)
T 3mvs_A          152 --SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDK  189 (210)
T ss_dssp             --CSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECCS
T ss_pred             --CCCEEEeCCcEEEEECCcCCCcccceEEEEEEEEECCC
Confidence              57999999999999999999999999999999999994

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.7e-37  Score=243.33  Aligned_cols=154  Identities=20%  Similarity=0.225  Sum_probs=138.4

Q ss_pred             eEecCCCCcCCCCeE------------EEEEEEEeCCCC--CceeEEEEEEEEEeCCCCCCe----------ecCCCceE
Q psy8618           2 ISTREPLDREARSSH------------ELVAEARDQGSP--PRSSRVAVKISVTDVNDNAPE----------LVDPQEDV   57 (232)
Q Consensus         2 i~~~~~lD~E~~~~~------------~l~v~a~d~~~~--~~~~~~~v~v~V~dvNd~~P~----------f~~~~~~~   57 (232)
                      |.++++||||....|            .|+|.|+|++.+  +.++.+.|+|.|.|+|||+|.          |... .|.
T Consensus        67 i~~~~~LDrE~~~~y~~~~~G~p~~~~~l~V~a~D~g~~~~~~~~~~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~-~y~  145 (246)
T 2x2u_A           67 LYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPET-RPS  145 (246)
T ss_dssp             EEESSCBCHHHHHHHHHTSTTSCCCEEEEEEECC-------CCCTTTEEEEEEEEESSCCCCGGGCCHHHHHSCSS-CCC
T ss_pred             EEECCcCChhHhhhhccccCCCcccceEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccccccccccccCCC-cEE
Confidence            789999999999999            999999999887  678889999999999999999          9987 789


Q ss_pred             EEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEe-CCC
Q psy8618          58 ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD-NGF  136 (232)
Q Consensus        58 ~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d-~~~  136 (232)
                      +.|+|+.++|+.|+++.|+|+|.|.|+.++|+|..+   . ..+|.|++.+|.|++.+.||||....|.|.|.|+| .|.
T Consensus       146 ~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~---~-~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~d~dg~  221 (246)
T 2x2u_A          146 FRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEG---E-GLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGA  221 (246)
T ss_dssp             EEEEBTSCCCEEEECSCHHHHHHCTTSCEEEEEESC---T-TSSEECCTTCCEEEESSCBCTTTCSEEEEEEEEEEC---
T ss_pred             EEEECCCCCCcEEEEEEEEcCCCCCCcEEEEEEccC---C-CCCEEEECCcCEEEeCCccCccccceEEEEEEEEecCCC
Confidence            999999999999999999999999999999999765   2 67899999999999999999999999999999998 555


Q ss_pred             CCcceeEEEEEEEEecCCCCCeee
Q psy8618         137 PSRQTVRLLRVEVLDLNDNRPTFT  160 (232)
Q Consensus       137 ~~~~~~~~v~i~v~d~Nd~~P~f~  160 (232)
                      |+++++++|.|+|.|+|||+|.|.
T Consensus       222 p~~ss~~~v~I~V~DvNDn~P~F~  245 (246)
T 2x2u_A          222 REEVVMVPFPVTVYDEDDSAPEFE  245 (246)
T ss_dssp             CCEEEEEEEEEEEECSSCCSCCCC
T ss_pred             CcceEEEEEEEEEEEeCCCCCccC
Confidence            889999999999999999999995

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=100.00  E-value=1e-34  Score=224.01  Aligned_cols=168  Identities=30%  Similarity=0.389  Sum_probs=148.6

Q ss_pred             ceEEEEecCC--CCCcEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEE
Q psy8618          55 EDVISVREEQ--PPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAAT  132 (232)
Q Consensus        55 ~~~~~v~E~~--~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~  132 (232)
                      .+.+.|.|+.  +.|+.|+.+ |+|+|.+ ++.++|+|.++   ....+|.|++.+|.|++.+.||||....|.|.|.|+
T Consensus         5 ~~~~~v~En~~~p~~~~v~~v-a~D~D~g-n~~i~Y~l~~~---~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~   79 (215)
T 2a4e_A            5 WNQFFVIEEYTGPDPVLVGRL-HSDIDSG-DGNIKYILSGE---GAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAV   79 (215)
T ss_dssp             CCEEEEETTCCSSSCEEEEEC-CCTTCCS-SSCEEEEEEET---TBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEE
T ss_pred             EeeEEEeccCCCCCCEEEEEE-EECCCCC-CCeEEEEEECC---CCCCeEEEECCceEEEECCccCCccCCEEEEEEEEE
Confidence            3578999994  578999988 8999987 67899999765   445789999999999999999999999999999999


Q ss_pred             eCCC-CCcceeEEEEEEEEecCCCCCeeeCCceEEEEE-------------eecCCC---CCCeEEEEEEccCCCCCCcE
Q psy8618         133 DNGF-PSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVS-------------ASDPDC---GVNAMVNYTLGESPSRTNHF  195 (232)
Q Consensus       133 d~~~-~~~~~~~~v~i~v~d~Nd~~P~f~~~~~~~~v~-------------~~D~d~---~~~~~i~y~l~~~~~~~~~f  195 (232)
                      |++. +++++.+.|.|+|.|+|||+|.|....|.++|.             ++|+|.   +.++.++|+|..+   ...|
T Consensus        80 D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~Gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~---~~~F  156 (215)
T 2a4e_A           80 DRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG---QPYF  156 (215)
T ss_dssp             ETTTCCEEEEEEEEEEEEECCCCCCCEESSSSEEEEEETTCCTTCEEEECCEECSSCTTTCSSSCCEEEEEES---TTTE
T ss_pred             ECCCCCcccccEEEEEEEeeCCCCCCCccCCceEEEEECCCCCCCEEEEEEEEECCCCCCCCceEEEEEEeCC---CCcE
Confidence            9975 567888999999999999999999888766554             588897   6778999999875   4689


Q ss_pred             EEECCceEEEEe-ecCCCccccEEEEEEEEEECCcc
Q psy8618         196 YMKSVSGEICIS-QDLDFESRSSYEFPVVATDRGKE  230 (232)
Q Consensus       196 ~i~~~~G~i~~~-~~ld~e~~~~y~l~V~a~D~g~~  230 (232)
                      .|++.+|.|++. +.||||....|.|.|.|+|+|.|
T Consensus       157 ~Id~~tG~I~~~~~~LD~E~~~~y~l~V~A~D~g~~  192 (215)
T 2a4e_A          157 SVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGH  192 (215)
T ss_dssp             EECTTTCEEEECSSCCCSSSCSEEEEEEEEETTTTC
T ss_pred             EEeCCccEEEEcccCCCcccCCEEEEEEEEEECCCC
Confidence            999999999999 99999999999999999999976

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=100.00  E-value=5.6e-35  Score=225.71  Aligned_cols=173  Identities=26%  Similarity=0.352  Sum_probs=153.1

Q ss_pred             EEEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCC-CCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeCC
Q psy8618          57 VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRD-TDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNG  135 (232)
Q Consensus        57 ~~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~-~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~  135 (232)
                      .+.|+|+++ |+.++.+.+.|.|.+.++.++|+|.++.. ....++|.|++.+|.|++.++||||....|.|.|.|+|++
T Consensus         6 ~~~V~En~~-g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g   84 (215)
T 2qvi_A            6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN   84 (215)
T ss_dssp             CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETT
T ss_pred             cEEEcCCCC-CCCCEEEEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcccCcccCCeEEEEEEEEECC
Confidence            589999999 88889999999998889999999976421 1235799999999999999999999999999999999999


Q ss_pred             CCCcceeEEEEEEEEecCCCCCeeeCCceEEEEE-------------eecCCC--CCCeEEEEEEccCCC---CCCcEEE
Q psy8618         136 FPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVS-------------ASDPDC--GVNAMVNYTLGESPS---RTNHFYM  197 (232)
Q Consensus       136 ~~~~~~~~~v~i~v~d~Nd~~P~f~~~~~~~~v~-------------~~D~d~--~~~~~i~y~l~~~~~---~~~~f~i  197 (232)
                      .+++++.+.|.|+|.|+|||+|.|....|.+.|.             ++|+|.  +.++.++|+|..+..   ....|.|
T Consensus        85 ~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~I  164 (215)
T 2qvi_A           85 GNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTI  164 (215)
T ss_dssp             TCCCEEEEEEEEEEECCCCCCCBCSSSEEEEEECSSCCTTCEEEECCCBCSSCTTSTTTCCCCEEEECSSCCSSTTCEEE
T ss_pred             CCceeeeEEEEEEEeECCCCCCcccCceeEEEEeCCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCeEEE
Confidence            9999999999999999999999999888766554             488898  678899999987621   4689999


Q ss_pred             ECCceEEEEe-ecCCCccccEEEEEEEEEECCcc
Q psy8618         198 KSVSGEICIS-QDLDFESRSSYEFPVVATDRGKE  230 (232)
Q Consensus       198 ~~~~G~i~~~-~~ld~e~~~~y~l~V~a~D~g~~  230 (232)
                      ++.+|.|++. ++||||....|.|.|.|+|+|.|
T Consensus       165 d~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~~  198 (215)
T 2qvi_A          165 NNETGDIITVAAGLDREKVQQYTLIIQATDMEGN  198 (215)
T ss_dssp             CTTTCEEEECSCCCCTTTCSEEEEEEECCTTTTC
T ss_pred             cCCCcEEEEecCCCCcccCCeEEEEEEEEECCCC
Confidence            9999999995 78999999999999999999876

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=100.00  E-value=6.5e-34  Score=219.22  Aligned_cols=146  Identities=30%  Similarity=0.430  Sum_probs=136.0

Q ss_pred             eEecCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCC
Q psy8618           2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDG   81 (232)
Q Consensus         2 i~~~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~   81 (232)
                      |.+.++||||....|.|+|.|+|+++   .+.+.|+|.|.|+|||+|.|... .|.+.|+|+.++|+.++++.|+|+|.|
T Consensus        64 i~~~~~LD~E~~~~y~l~v~a~D~~~---~~~~~v~I~V~DvNDn~P~f~~~-~y~~~v~E~~~~gt~v~~v~A~D~D~g  139 (210)
T 3mvs_A           64 VWLRQPLDRETKSEFTVEFSVSDHQG---VITRKVNIQVGDVNDNAPTFHNQ-PYSVRIPENTPVGTPIFIVNATDPDLG  139 (210)
T ss_dssp             EEESSCCCTTTCCEEEEEEEEECSSC---EEEEEEEEEEECCCCCCCEECSC-SEEEEEETTCCTTCEEEECCEECCSSG
T ss_pred             EEECCccCCcccceEEEEEEEEeCCC---CEEEEEEEEEEeCCCCCCcCCCc-eEEEEEECCCCCCCEEEEEEEEeCCCC
Confidence            78899999999999999999999875   46789999999999999999988 789999999999999999999999999


Q ss_pred             CCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeCC-CCCcceeEEEEEEEEecCCCC
Q psy8618          82 SNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNG-FPSRQTVRLLRVEVLDLNDNR  156 (232)
Q Consensus        82 ~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~-~~~~~~~~~v~i~v~d~Nd~~  156 (232)
                      .++.++|+|..+     .++|.|++.+|.|++.++||||....|.|.|.|+|++ .+++++.+.|.|+|.|+|||+
T Consensus       140 ~n~~v~Y~i~~~-----~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~g~~~~~s~~~~v~I~V~DvND~~  210 (210)
T 3mvs_A          140 AGGSVLYSFQPP-----SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDMD  210 (210)
T ss_dssp             GGGCEEEEESSC-----CSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECCSSSCCEEEEEEEEEEECCCCCC
T ss_pred             CCceEEEEEeCC-----CCCEEEeCCcEEEEECCcCCCcccceEEEEEEEEECCCCCCCEEEEEEEEEEEccCCCC
Confidence            999999999643     4689999999999999999999999999999999998 468899999999999999975

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=100.00  E-value=2.3e-34  Score=222.30  Aligned_cols=173  Identities=28%  Similarity=0.353  Sum_probs=151.4

Q ss_pred             EEEEecCCC--CCcEEEEEEEEeCCCCCCcEEEEEEeeCCC-CCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEe
Q psy8618          57 VISVREEQP--PGTEVVRARAVDKDDGSNATISYSILKGRD-TDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD  133 (232)
Q Consensus        57 ~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~-~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d  133 (232)
                      .+.|+|+.+  .|+.++++.| |.|  .++.++|+|.++.. .+..++|.|++.+|.|++.++||||....|.|.|.|+|
T Consensus         6 ~~~V~En~~~~~~~~v~~v~a-D~d--~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D   82 (213)
T 3qrb_A            6 AISCPENEKGEFPKNLVQIKS-NRD--KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVS   82 (213)
T ss_dssp             EEEEETTCCSSSSEEEEECCC-GGG--GTSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEE
T ss_pred             CEEEeCCCCCCCCcEEEEEEE-CCC--CCceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCccCcccCceEEEEEEEEe
Confidence            589999998  6788999999 777  47889999976422 13456999999999999999999999999999999999


Q ss_pred             CCCCCcceeEEEEEEEEecCCCCCeeeCCceEEEEE-------------eecCCCC---CCeEEEEEEccCC---CCCCc
Q psy8618         134 NGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVS-------------ASDPDCG---VNAMVNYTLGESP---SRTNH  194 (232)
Q Consensus       134 ~~~~~~~~~~~v~i~v~d~Nd~~P~f~~~~~~~~v~-------------~~D~d~~---~~~~i~y~l~~~~---~~~~~  194 (232)
                      .+.+++++.+.|.|+|.|+|||+|.|....|.+.|.             ++|+|.+   .++.++|+|..+.   .....
T Consensus        83 ~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~~~~~~n~~i~Y~i~~~~~~~~~~~~  162 (213)
T 3qrb_A           83 SNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM  162 (213)
T ss_dssp             TTSCBCSCCEEEEEEEECCSCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTSSTTCCEEEEEEEESCCSCSCS
T ss_pred             CCCCcccceEEEEEEEEEccCCCCccCCCceEEEEECCCCCCcEEEEEEEEeCCCCCCCcCcEEEEEEccCCCCCCcCCe
Confidence            998888999999999999999999999988866655             4899988   7889999998641   14579


Q ss_pred             EEEECCceEEEEe-ecCCCccccEEEEEEEEEECCccCC
Q psy8618         195 FYMKSVSGEICIS-QDLDFESRSSYEFPVVATDRGKETQ  232 (232)
Q Consensus       195 f~i~~~~G~i~~~-~~ld~e~~~~y~l~V~a~D~g~~~q  232 (232)
                      |.|++.+|.|.+. ++||||....|.|.|.|+|+|.|++
T Consensus       163 F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~  201 (213)
T 3qrb_A          163 FTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGL  201 (213)
T ss_dssp             EEECTTTCEEEECSSCCCTTTCCEEEEEEEEETGGGTSC
T ss_pred             EEEECCCcEEEEccCCCCCccCceEEEEEEEEeCCCCCc
Confidence            9999999999997 7899999999999999999998753

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=100.00  E-value=2e-33  Score=215.19  Aligned_cols=165  Identities=27%  Similarity=0.333  Sum_probs=146.8

Q ss_pred             eEEEEecCCCCC--cEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEe
Q psy8618          56 DVISVREEQPPG--TEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD  133 (232)
Q Consensus        56 ~~~~v~E~~~~g--~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d  133 (232)
                      ..+.|+|+.+.|  ..++++. .|+|.+.+   +|+|.++   +..++|.|++.+|.|++.+.||||....|.|.|.|+|
T Consensus         5 ~~~~V~En~~~~~~~~v~~v~-~D~D~g~~---~Y~i~~~---~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D   77 (203)
T 3ppe_A            5 NRMHIREEIDSPLPHHVGKLT-SSVGNKNA---MYIIEGE---SANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIID   77 (203)
T ss_dssp             SEEEEETTCCSSSCEEEEECC-BCCCCTTE---EEEEEET---TBTTTEEEETTTTEEEESSCCCTTTCCEEEEEEEEEE
T ss_pred             ccEEEEccCCCCCCEEEEEEE-ecCCCCCc---EEEEecC---CCCCeEEEECCcCEEEECccccccccceEEEEEEEEE
Confidence            368999999988  8889888 99997765   9999866   5567999999999999999999999999999999999


Q ss_pred             CCCC-CcceeEEEEEEEEecCCCCCeeeCCceEEEEE-------------eecCCC---CCCeEEEEEEccCCCCCCcEE
Q psy8618         134 NGFP-SRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVS-------------ASDPDC---GVNAMVNYTLGESPSRTNHFY  196 (232)
Q Consensus       134 ~~~~-~~~~~~~v~i~v~d~Nd~~P~f~~~~~~~~v~-------------~~D~d~---~~~~~i~y~l~~~~~~~~~f~  196 (232)
                      ++.+ ++++.+.|.|+|.|+|||+|.|....|.++|.             ++|+|.   +.++.++|+|..+   ...|.
T Consensus        78 ~g~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i~~~---~~~F~  154 (203)
T 3ppe_A           78 RRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKG---NEYFT  154 (203)
T ss_dssp             TTTTEECSCCEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTSSSTTCEEEEEEES---TTTEE
T ss_pred             CCCCCcccceEEEEEEEcCCCCCCCCccCCccEEEEeccCCCCcEEEEEEEEcCCCcCCCCceEEEEEEeCC---CCcEE
Confidence            9876 67888999999999999999999988866655             488884   6788999999975   35999


Q ss_pred             EECCceEEEEe-ecCCCccccEEEEEEEEEEC-CccC
Q psy8618         197 MKSVSGEICIS-QDLDFESRSSYEFPVVATDR-GKET  231 (232)
Q Consensus       197 i~~~~G~i~~~-~~ld~e~~~~y~l~V~a~D~-g~~~  231 (232)
                      |+ .+|.|++. ++||||....|.|.|.|+|+ |.|+
T Consensus       155 I~-~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~G~p~  190 (203)
T 3ppe_A          155 VD-DSGVIFTARADLDRESQSAYEIIVKAKDALGLTG  190 (203)
T ss_dssp             EC-TTSEEEESCSCCCTTTCSEEEEEEEEEETTCCCC
T ss_pred             Ee-CCeEEEECCcCCCcccCCEEEEEEEEEeCCCCCC
Confidence            99 99999999 99999999999999999998 7764

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=100.00  E-value=9.8e-34  Score=218.76  Aligned_cols=149  Identities=33%  Similarity=0.395  Sum_probs=138.4

Q ss_pred             eEecCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCC
Q psy8618           2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDG   81 (232)
Q Consensus         2 i~~~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~   81 (232)
                      |.+.++||||.+..|.|+|.|+|.+++++++.+.|+|.|.|+|||+|.|... .|.+.|+|+.++|+.|+++.|+|+|.+
T Consensus        60 i~~~~~LDrE~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~F~~~-~y~~~v~En~~~gt~v~~v~A~D~D~~  138 (213)
T 3qrb_A           60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQE-VFEGSVAEGAVPGTSVMKVSATDADDD  138 (213)
T ss_dssp             EEECSCCCTTTCSEEEEEEEEEETTSCBCSCCEEEEEEEECCSCCCCEESCS-EEEEEEETTCCTTCEEEECCEECCSCT
T ss_pred             EEECCccCcccCceEEEEEEEEeCCCCcccceEEEEEEEEEccCCCCccCCC-ceEEEEECCCCCCcEEEEEEEEeCCCC
Confidence            7889999999999999999999999988889999999999999999999987 789999999999999999999999998


Q ss_pred             ---CCcEEEEEEeeCCCC-CCcccEEEeCCceEEEEC-ccCCccCCCEEEEEEEEEeCCCCCcceeEEEEEEEEe
Q psy8618          82 ---SNATISYSILKGRDT-DGYGVFTIDPISGVIRTK-SVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD  151 (232)
Q Consensus        82 ---~~~~v~y~i~~~~~~-~~~~~f~id~~tG~i~~~-~~ld~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d  151 (232)
                         .|+.++|+|.++.+. ...++|.|++.+|.|++. +.||||....|.|.|.|+|+|.|+++++++|.|+|.|
T Consensus       139 ~~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~t~~v~I~V~D  213 (213)
T 3qrb_A          139 VNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD  213 (213)
T ss_dssp             TTSSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETGGGTSCEEEEEEEEEEEC
T ss_pred             CCCcCcEEEEEEccCCCCCCcCCeEEEECCCcEEEEccCCCCCccCceEEEEEEEEeCCCCCceEEEEEEEEEEC
Confidence               789999999876432 145789999999999997 7899999999999999999999999999999999986

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=233.45  Aligned_cols=176  Identities=19%  Similarity=0.161  Sum_probs=146.0

Q ss_pred             eecCCCceEEEEecCCCCCcEEEEEEEEeCCCCC--CcEEE------EEEeeCCCCCCcccEEEeCCceEEEECccCCcc
Q psy8618          49 ELVDPQEDVISVREEQPPGTEVVRARAVDKDDGS--NATIS------YSILKGRDTDGYGVFTIDPISGVIRTKSVLDHE  120 (232)
Q Consensus        49 ~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~--~~~v~------y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e  120 (232)
                      .|.+. .|.+.|+|++++|+.|+++.|+|+|.+.  +..+.      |++..+    ...+|.|++.+|.|++.++||||
T Consensus         2 ~F~~~-~Y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~~~i~~~~~~~y~i~~~----~~~~F~Id~~tG~i~~~~~LDrE   76 (246)
T 2x2u_A            2 YFSRD-AYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLH----ENNWIRIQEDTGLLYLQRSLDHS   76 (246)
T ss_dssp             EESCS-EEEEEEETTBCTTCEEEECCEECSSTTCCCCCEECSEEECGGGCEEE----ECCSEEECTTTCEEEESSCBCHH
T ss_pred             CccCC-ceEEEeeCCCCCCCEEEEEEEEcCCCCCcceEEEeeccccceeccCC----CCCEEEECCCcEEEEECCcCChh
Confidence            47776 7899999999999999999999999854  33343      444322    35789999999999999999999


Q ss_pred             CCCEE------------EEEEEEEeCCCC--CcceeEEEEEEEEecCCCCCe----------eeCCceEEEEEe------
Q psy8618         121 DRSIY------------RIAVAATDNGFP--SRQTVRLLRVEVLDLNDNRPT----------FTSSSLLFKVSA------  170 (232)
Q Consensus       121 ~~~~~------------~l~v~a~d~~~~--~~~~~~~v~i~v~d~Nd~~P~----------f~~~~~~~~v~~------  170 (232)
                      ....|            .|.|.|+|++.+  ++++++.|.|+|.|+|||+|.          |....|.+.|.|      
T Consensus        77 ~~~~y~~~~~G~p~~~~~l~V~a~D~g~~~~~~~~~~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~y~~~v~En~~~Gt  156 (246)
T 2x2u_A           77 SWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGT  156 (246)
T ss_dssp             HHHHHHHTSTTSCCCEEEEEEECC-------CCCTTTEEEEEEEEESSCCCCGGGCCHHHHHSCSSCCCEEEEBTSCCCE
T ss_pred             HhhhhccccCCCcccceEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccccccccccccCCCcEEEEEECCCCCCc
Confidence            99889            999999999987  678889999999999999999          999888887776      


Q ss_pred             -------ecCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCccccEEEEEEEEEE-CCccC
Q psy8618         171 -------SDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATD-RGKET  231 (232)
Q Consensus       171 -------~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a~D-~g~~~  231 (232)
                             +|+|.+.++.|+|+|..+  ....|.|++.+|.|++.++||||....|.|.|.|+| .|.|+
T Consensus       157 ~v~~v~A~D~D~g~n~~i~Y~i~~~--~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~d~dg~p~  223 (246)
T 2x2u_A          157 FHQFRLLPVQFLCPQISVAYRLLEG--EGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGARE  223 (246)
T ss_dssp             EEECSCHHHHHHCTTSCEEEEEESC--TTSSEECCTTCCEEEESSCBCTTTCSEEEEEEEEEEC---CC
T ss_pred             EEEEEEEEcCCCCCCcEEEEEEccC--CCCCEEEECCcCEEEeCCccCccccceEEEEEEEEecCCCCc
Confidence                   677777777889999975  278999999999999999999999999999999998 55554

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=100.00  E-value=8.5e-34  Score=219.09  Aligned_cols=150  Identities=32%  Similarity=0.388  Sum_probs=137.6

Q ss_pred             CeEecCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCC
Q psy8618           1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDD   80 (232)
Q Consensus         1 ~i~~~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~   80 (232)
                      .|.++++||||.++.|.|+|.|+|++++++++.+.|+|.|.|+|||+|.|... .|.+.|+|+.++|+.|+++.|+|+|.
T Consensus        59 ~i~~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~-~y~~~v~En~~~gt~v~~v~A~D~D~  137 (215)
T 2qvi_A           59 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQ-VWNGSVPEGSKPGTYVMTVTAIDADD  137 (215)
T ss_dssp             EEEECSCCCTTTCSEEEEEEEEEETTTCCCEEEEEEEEEEECCCCCCCBCSSS-EEEEEECSSCCTTCEEEECCCBCSSC
T ss_pred             EEEECcccCcccCCeEEEEEEEEECCCCceeeeEEEEEEEeECCCCCCcccCc-eeEEEEeCCCCCCCEEEEEEEEeCCC
Confidence            37889999999999999999999999999999999999999999999999987 78999999999999999999999998


Q ss_pred             --CCCcEEEEEEeeCCCC-CCcccEEEeCCceEEEEC-ccCCccCCCEEEEEEEEEeCCCC---CcceeEEEEEEEEe
Q psy8618          81 --GSNATISYSILKGRDT-DGYGVFTIDPISGVIRTK-SVLDHEDRSIYRIAVAATDNGFP---SRQTVRLLRVEVLD  151 (232)
Q Consensus        81 --~~~~~v~y~i~~~~~~-~~~~~f~id~~tG~i~~~-~~ld~e~~~~~~l~v~a~d~~~~---~~~~~~~v~i~v~d  151 (232)
                        +.|+.++|+|..+.+. ...+.|.|++.+|.|++. +.||||....|.|.|.|+|++.+   +++++++|.|+|.|
T Consensus       138 ~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~~p~~~ls~t~~v~I~V~D  215 (215)
T 2qvi_A          138 PNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD  215 (215)
T ss_dssp             TTSTTTCCCCEEEECSSCCSSTTCEEECTTTCEEEECSCCCCTTTCSEEEEEEECCTTTTCTTTSCCCEEEEEEEECC
T ss_pred             CCCCCcEEEEEEecCCCCCCcCCeEEEcCCCcEEEEecCCCCcccCCeEEEEEEEEECCCCCCCCcceEEEEEEEEEC
Confidence              6799999999887421 146889999999999995 78999999999999999999877   78999999999876

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=100.00  E-value=1.8e-33  Score=217.98  Aligned_cols=171  Identities=27%  Similarity=0.378  Sum_probs=148.7

Q ss_pred             EEEEecCCCCC--cEEEEEEEEeCCCCCCcEEEEEEeeCC-CCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEe
Q psy8618          57 VISVREEQPPG--TEVVRARAVDKDDGSNATISYSILKGR-DTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD  133 (232)
Q Consensus        57 ~~~v~E~~~~g--~~v~~v~a~D~D~~~~~~v~y~i~~~~-~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d  133 (232)
                      .+.|+|+.+.|  +.++++.|.|.|.    .++|+|..+. ..+..++|.|++.+|.|++.++||||....|.|.|.|+|
T Consensus         7 ~~~V~En~~~g~~~~v~~v~a~D~d~----~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D   82 (218)
T 3k5r_A            7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTD   82 (218)
T ss_dssp             CEEEETTCCSSCCEEEEECBCTTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEC
T ss_pred             cEEEecCCCCCCCEEEEEEEecCCCc----eEEEEEEcCCCCCCCCCeEEEeCCceEEEECCcCCcccCCEEEEEEEEEE
Confidence            58999999988  8899999998874    5899996532 224568999999999999999999999999999999999


Q ss_pred             CCCCCcceeEEEEEEEEecCCCCCeeeCCceEEEEEe-------------ecCCC--CCCeEEEEEEccCCCC---CCcE
Q psy8618         134 NGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSA-------------SDPDC--GVNAMVNYTLGESPSR---TNHF  195 (232)
Q Consensus       134 ~~~~~~~~~~~v~i~v~d~Nd~~P~f~~~~~~~~v~~-------------~D~d~--~~~~~i~y~l~~~~~~---~~~f  195 (232)
                      ++.+++++.+.|.|+|.|+|||+|.|....|.+.|.|             +|+|.  +.++.++|+|..+...   ...|
T Consensus        83 ~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F  162 (218)
T 3k5r_A           83 ASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMF  162 (218)
T ss_dssp             SSSCEEEEEEEEEEEEECTTCCCCCCCSCSEEEEEETTCCTTCEEEECCCSCSSSSCGGGGCEEEEEEEEESCCSCSCSE
T ss_pred             CCCCceeeeEEEEEEEEeCCCCCCcccCCceEEEEECCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCEE
Confidence            9998899999999999999999999999888776655             78888  5689999999875222   3689


Q ss_pred             EEECCceEEEEe---ecCCCcc--ccEEEEEEEEEECC--ccC
Q psy8618         196 YMKSVSGEICIS---QDLDFES--RSSYEFPVVATDRG--KET  231 (232)
Q Consensus       196 ~i~~~~G~i~~~---~~ld~e~--~~~y~l~V~a~D~g--~~~  231 (232)
                      .|++.+|.|.+.   +.||||.  .+.|.|.|.|+|+|  .|+
T Consensus       163 ~Id~~tG~i~~~~~~~~LD~E~~~~~~y~l~V~a~D~gg~~p~  205 (218)
T 3k5r_A          163 YIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVG  205 (218)
T ss_dssp             EECTTTCEEEECSCGGGCCGGGCSCSEEEEEEEEEECSSTTTT
T ss_pred             EEECCccEEEEeccCCCCCccccCCCeEEEEEEEEECCCCCCC
Confidence            999999999987   6899999  67999999999999  664

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=100.00  E-value=3e-33  Score=216.78  Aligned_cols=150  Identities=29%  Similarity=0.384  Sum_probs=136.9

Q ss_pred             CeEecCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCC
Q psy8618           1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDD   80 (232)
Q Consensus         1 ~i~~~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~   80 (232)
                      .|.++++||||.+..|.|+|.|+|++++++++.+.|+|.|.|+|||+|.|... .|.+.|+|+.++|+.|+++.|+|+|.
T Consensus        59 ~i~~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~-~y~~~v~E~~~~gt~v~~v~A~D~D~  137 (218)
T 3k5r_A           59 SVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREG-PYIGHVMEGSPTGTTVMRMTAFDADD  137 (218)
T ss_dssp             EEEECSCCCTTTCSEEEEEEEEECSSSCEEEEEEEEEEEEECTTCCCCCCCSC-SEEEEEETTCCTTCEEEECCCSCSSS
T ss_pred             EEEECCcCCcccCCEEEEEEEEEECCCCceeeeEEEEEEEEeCCCCCCcccCC-ceEEEEECCCCCCCEEEEEEEEeCCC
Confidence            37889999999999999999999999988999999999999999999999987 78999999999999999999999998


Q ss_pred             --CCCcEEEEEEeeCCCC-CCcccEEEeCCceEEEEC---ccCCccC--CCEEEEEEEEEeCC--CCCcceeEEEEEEEE
Q psy8618          81 --GSNATISYSILKGRDT-DGYGVFTIDPISGVIRTK---SVLDHED--RSIYRIAVAATDNG--FPSRQTVRLLRVEVL  150 (232)
Q Consensus        81 --~~~~~v~y~i~~~~~~-~~~~~f~id~~tG~i~~~---~~ld~e~--~~~~~l~v~a~d~~--~~~~~~~~~v~i~v~  150 (232)
                        +.|+.++|+|.++.+. ...++|.|++.+|.|++.   +.||||.  ...|.|.|.|+|+|  .|+++++++|.|+|.
T Consensus       138 ~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~~~LD~E~~~~~~y~l~V~a~D~gg~~p~~sst~~v~I~V~  217 (218)
T 3k5r_A          138 PATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVID  217 (218)
T ss_dssp             SCGGGGCEEEEEEEEESCCSCSCSEEECTTTCEEEECSCGGGCCGGGCSCSEEEEEEEEEECSSTTTTCEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEecCCCCCCcCCEEEEECCccEEEEeccCCCCCccccCCCeEEEEEEEEECCCCCCCeeEEEEEEEEEE
Confidence              6789999999876421 123789999999999987   6899999  67999999999999  889999999999998


Q ss_pred             e
Q psy8618         151 D  151 (232)
Q Consensus       151 d  151 (232)
                      |
T Consensus       218 D  218 (218)
T 3k5r_A          218 D  218 (218)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=100.00  E-value=2.5e-34  Score=221.10  Aligned_cols=166  Identities=25%  Similarity=0.369  Sum_probs=141.0

Q ss_pred             EEEEecCCCCC--cEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeC
Q psy8618          57 VISVREEQPPG--TEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDN  134 (232)
Q Consensus        57 ~~~v~E~~~~g--~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~  134 (232)
                      .+.|+|+.+.+  +.++.+ |+|+|.| ++.++|+|.++   +..++|.|++.+|.|++.+.||||....|.|.|.|+|+
T Consensus         6 ~~~v~En~~~~~~~~v~~~-a~D~D~g-~~~i~Y~l~~~---~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~   80 (207)
T 3lnd_A            6 QFFLLEEYTGSDYQYVGKL-HSDQDRG-DGSLKYILSGD---GAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNR   80 (207)
T ss_dssp             CEEEESCBCSSSCEEEEEC-CCTTCCS-STTBCCCCCSS---SBTTTEEECTTTCEEEECSCCCGGGCCEEEC----CBS
T ss_pred             ccEEEeecCCCCCEEEEEE-EeCCCCC-CceEEEEEECC---CCCCeEEEECCceEEEECCCcCcccCCEEEEEEEEEEC
Confidence            47899998855  588888 9999998 56799999654   44568999999999999999999999999999999998


Q ss_pred             C-CCCcceeEEEEEEEEecCCCCCeeeCCceEEEEEe-------------ecCCC---CCCeEEEEEEccCCCCCCcEEE
Q psy8618         135 G-FPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSA-------------SDPDC---GVNAMVNYTLGESPSRTNHFYM  197 (232)
Q Consensus       135 ~-~~~~~~~~~v~i~v~d~Nd~~P~f~~~~~~~~v~~-------------~D~d~---~~~~~i~y~l~~~~~~~~~f~i  197 (232)
                      + .+++++.+.|.|+|.|+|||+|.|....|.+.|.|             +|+|.   +.++.++|+|..+   ...|.|
T Consensus        81 ~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i~~~---~~~F~I  157 (207)
T 3lnd_A           81 RTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG---QPYFSV  157 (207)
T ss_dssp             SSCCCCSCCCCCEEEEECCSCCCCEESCSEEEEEEESSCCTTCEEEECCEECSSCTTSSSTTCCEEEEEES---GGGEEE
T ss_pred             CCCCccccEEEEEEEECccCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCCCcEEEEEEcCC---CCCEEE
Confidence            7 46788889999999999999999999888776554             89997   6778899999874   469999


Q ss_pred             ECCceEEEEe-ecCCCccccEEEEEEEEEECCcc
Q psy8618         198 KSVSGEICIS-QDLDFESRSSYEFPVVATDRGKE  230 (232)
Q Consensus       198 ~~~~G~i~~~-~~ld~e~~~~y~l~V~a~D~g~~  230 (232)
                      ++.+|.|++. +.||||....|.|.|.|+|+|.|
T Consensus       158 d~~tG~i~~~~~~lD~E~~~~y~l~V~A~D~g~~  191 (207)
T 3lnd_A          158 ESETGIIKTALLNMDRENREQYQVVIQAKDMGGQ  191 (207)
T ss_dssp             CTTTCEEEECCSSCCC--CCEEEEEEEEESGGGC
T ss_pred             cCCCcEEEECcccCCcccCCEEEEEEEEEECCCC
Confidence            9999999999 89999999999999999999976

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=100.00  E-value=9.3e-33  Score=211.54  Aligned_cols=143  Identities=37%  Similarity=0.461  Sum_probs=133.2

Q ss_pred             eEecCCCCcCCCCeEEEEEEEEeCCCC-CceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCC-
Q psy8618           2 ISTREPLDREARSSHELVAEARDQGSP-PRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKD-   79 (232)
Q Consensus         2 i~~~~~lD~E~~~~~~l~v~a~d~~~~-~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D-   79 (232)
                      |.+.++||||.+..|.|+|.|+|++++ ++++.+.|+|.|.|+|||+|.|... .|.+.|+|+.++|+.|+++.|+|+| 
T Consensus        55 i~~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~~v~I~V~DvNDn~P~F~~~-~y~~~v~E~~~~gt~v~~v~A~D~D~  133 (203)
T 3ppe_A           55 IYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQK-IFNGSVPEMSRLGTSVTKVTAEDADD  133 (203)
T ss_dssp             EEESSCCCTTTCCEEEEEEEEEETTTTEECSCCEEEEEEEECCCCCCCEESCS-EEEEEEETTCCTTCEEEECCEECCSC
T ss_pred             EEECccccccccceEEEEEEEEECCCCCcccceEEEEEEEcCCCCCCCCccCC-ccEEEEeccCCCCcEEEEEEEEcCCC
Confidence            788999999999999999999999876 6788899999999999999999988 7899999999999999999999999 


Q ss_pred             --CCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEEC-ccCCccCCCEEEEEEEEEeC-CCCCcceeEEEEEEEEe
Q psy8618          80 --DGSNATISYSILKGRDTDGYGVFTIDPISGVIRTK-SVLDHEDRSIYRIAVAATDN-GFPSRQTVRLLRVEVLD  151 (232)
Q Consensus        80 --~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~-~~ld~e~~~~~~l~v~a~d~-~~~~~~~~~~v~i~v~d  151 (232)
                        .|.|+.++|+|..+.     .+|.|+ .+|.|++. +.||||....|.|.|.|+|+ |.|++++++.|.|+|.|
T Consensus       134 ~~~g~n~~i~Y~i~~~~-----~~F~I~-~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~G~p~~s~t~~v~I~V~D  203 (203)
T 3ppe_A          134 PTVAGHATVTYQIIKGN-----EYFTVD-DSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD  203 (203)
T ss_dssp             TTSSSTTCEEEEEEEST-----TTEEEC-TTSEEEESCSCCCTTTCSEEEEEEEEEETTCCCCSSSEEEEEEEEEC
T ss_pred             cCCCCceEEEEEEeCCC-----CcEEEe-CCeEEEECCcCCCcccCCEEEEEEEEEeCCCCCCCeEEEEEEEEEEC
Confidence              477899999998763     489999 99999999 99999999999999999998 77889999999999986

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=100.00  E-value=1.3e-32  Score=211.48  Aligned_cols=145  Identities=30%  Similarity=0.465  Sum_probs=128.3

Q ss_pred             CeEecCCCCcCCCCeEEEEEEEEeCC-CCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCC
Q psy8618           1 EISTREPLDREARSSHELVAEARDQG-SPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKD   79 (232)
Q Consensus         1 ~i~~~~~lD~E~~~~~~l~v~a~d~~-~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D   79 (232)
                      .|.+.++||||.+..|.|+|.|+|++ ++++++.+.|+|.|.|+|||+|.|... .|.+.|+|+.++|+.++++.|+|+|
T Consensus        56 ~i~~~~~LDrE~~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~-~y~~~v~E~~~~gt~v~~v~A~D~D  134 (207)
T 3lnd_A           56 DIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKD-VYTATVPEMADVGTFVVQVTATDAD  134 (207)
T ss_dssp             EEEECSCCCGGGCCEEEC----CBSSSCCCCSCCCCCEEEEECCSCCCCEESCS-EEEEEEESSCCTTCEEEECCEECSS
T ss_pred             EEEECCCcCcccCCEEEEEEEEEECCCCCccccEEEEEEEECccCCCCCccCCC-ceEEEEeCCCCCCCEEEEEEEEeCC
Confidence            37889999999999999999999987 467888999999999999999999987 7899999999999999999999999


Q ss_pred             C---CCCcEEEEEEeeCCCCCCcccEEEeCCceEEEEC-ccCCccCCCEEEEEEEEEeCCCC--CcceeEEEEEEEEe
Q psy8618          80 D---GSNATISYSILKGRDTDGYGVFTIDPISGVIRTK-SVLDHEDRSIYRIAVAATDNGFP--SRQTVRLLRVEVLD  151 (232)
Q Consensus        80 ~---~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~-~~ld~e~~~~~~l~v~a~d~~~~--~~~~~~~v~i~v~d  151 (232)
                      .   |.|+.++|+|..+     ..+|.|++.+|.|++. +.||||....|.|.|.|+|+|.+  +++++++|.|+|.|
T Consensus       135 ~~~~g~n~~i~Y~i~~~-----~~~F~Id~~tG~i~~~~~~lD~E~~~~y~l~V~A~D~g~~~~~~s~t~~v~I~V~D  207 (207)
T 3lnd_A          135 DPTYGNSAKVVYSILQG-----QPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD  207 (207)
T ss_dssp             CTTSSSTTCCEEEEEES-----GGGEEECTTTCEEEECCSSCCC--CCEEEEEEEEESGGGCTTCBEEEEEEEEEEEC
T ss_pred             CCCCCCCcEEEEEEcCC-----CCCEEEcCCCcEEEECcccCCcccCCEEEEEEEEEECCCCCCCcEeEEEEEEEEeC
Confidence            8   7888999999865     3489999999999999 99999999999999999999876  78999999999986

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.97  E-value=8.8e-32  Score=189.02  Aligned_cols=118  Identities=28%  Similarity=0.401  Sum_probs=109.3

Q ss_pred             EEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccC
Q psy8618          38 ISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVL  117 (232)
Q Consensus        38 v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~l  117 (232)
                      ++|.|+|||+|.|.+. .|.+.|+|+.++|+.|+++.|+|+|.|.++.++|+|..+.. ....+|.|++.+|.|++.+.|
T Consensus         2 ~~V~DvNDn~P~F~~~-~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~-~~~~~F~Id~~tG~I~~~~~L   79 (119)
T 2yst_A            2 SSGSSGNDNSPRFEKS-VYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATE-SVRRLLRLDETSGWLSVLHRI   79 (119)
T ss_dssp             CCCCCSCCCCCCCSSS-EEEEEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCT-THHHHEEECTTTCEEEECSCC
T ss_pred             CeEecCCCCCCCcCCC-cEEEEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCC-ccccEEEEeCCceEEEECccC
Confidence            4689999999999998 78999999999999999999999999999999999976421 125799999999999999999


Q ss_pred             CccCCCEEEEEEEEEeCCCCCcceeEEEEEEEEecCCCCC
Q psy8618         118 DHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRP  157 (232)
Q Consensus       118 d~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d~Nd~~P  157 (232)
                      |||....|.|.|.|+|+|.|++++++.|.|+|.|+|||+|
T Consensus        80 D~E~~~~y~l~V~A~D~g~p~~s~~~~v~I~V~DvNDn~P  119 (119)
T 2yst_A           80 DREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP  119 (119)
T ss_dssp             CTTTCSEEEEEEEECCSBTTBCCEEEEEEEEEECSTTCCC
T ss_pred             CcccCCEEEEEEEEEECCCCCcEEEEEEEEEEEeccCCCC
Confidence            9999999999999999999999999999999999999998

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=99.97  E-value=3.9e-31  Score=215.81  Aligned_cols=167  Identities=26%  Similarity=0.365  Sum_probs=148.0

Q ss_pred             EEEEecC--CCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeC
Q psy8618          57 VISVREE--QPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDN  134 (232)
Q Consensus        57 ~~~v~E~--~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~  134 (232)
                      .+.+.|+  .+.|+.|+++. +|+|.+ ++.++|+|.++   ....+|.|++.+|.|++.+.||||....|.|.|.|+|+
T Consensus         6 ~~~v~E~~~~~~~~~v~~va-~D~D~g-~~~i~Y~l~~~---~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~   80 (322)
T 2a62_A            6 QMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGD---GAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDF   80 (322)
T ss_dssp             CEECCCSCCCSSCEECCCCC-CCCCCS-SCCCEEEEEET---TBTTTEEEETTTTEEEECSCCCTTTCSBCCEEEEEECT
T ss_pred             eeeeccccCCCCCEEEEEEE-EcCCCC-CCEEEEEEECC---CCCCcEEEeCCcCEEEEeccCCcccccEEEEEEEEEEC
Confidence            5789999  88999999985 899987 57899999754   45578999999999999999999999999999999998


Q ss_pred             CC-CCcceeEEEEEEEEecCCCCCeeeCCceEEEEEe-------------ecCCC---CCCeEEEEEEccCCCCCCcEEE
Q psy8618         135 GF-PSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSA-------------SDPDC---GVNAMVNYTLGESPSRTNHFYM  197 (232)
Q Consensus       135 ~~-~~~~~~~~v~i~v~d~Nd~~P~f~~~~~~~~v~~-------------~D~d~---~~~~~i~y~l~~~~~~~~~f~i  197 (232)
                      +. +++++.+.|.|+|.|+|||+|.|....|.++|.|             +|+|.   +.++.++|+|..+   ...|.|
T Consensus        81 ~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~---~~~F~I  157 (322)
T 2a62_A           81 ETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEG---QPYFSI  157 (322)
T ss_dssp             TTCSEEEEEEEECEECCCCSCSCBCCSSSEEEEEECSSCCTTCBCCCCCCCBCSCSSSTTSSCEEEEEEEC---TTTEEE
T ss_pred             CCCCcccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCccEEEEEEEccC---CCCEEE
Confidence            75 3577888999999999999999999998887765             78885   5678999999875   468999


Q ss_pred             ECCceEEEEe-ecCCCccccEEEEEEEEEECCccC
Q psy8618         198 KSVSGEICIS-QDLDFESRSSYEFPVVATDRGKET  231 (232)
Q Consensus       198 ~~~~G~i~~~-~~ld~e~~~~y~l~V~a~D~g~~~  231 (232)
                      ++.+|.|.+. +.||||....|.|.|.|+|+|.|+
T Consensus       158 d~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~  192 (322)
T 2a62_A          158 EPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHS  192 (322)
T ss_dssp             CTTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSS
T ss_pred             ecCCCEEEecccCCCcccCCeEEEEEEEEECCCCC
Confidence            9999999998 899999999999999999999874

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=99.97  E-value=1.2e-29  Score=207.08  Aligned_cols=145  Identities=28%  Similarity=0.412  Sum_probs=126.9

Q ss_pred             eEecCCCCcCCCCeEEEEEEEEeCCC----CCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEe
Q psy8618           2 ISTREPLDREARSSHELVAEARDQGS----PPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVD   77 (232)
Q Consensus         2 i~~~~~lD~E~~~~~~l~v~a~d~~~----~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D   77 (232)
                      |.+.++||||....|.|+|.|+|+|+    +++++.+.++|.|.| |||+|.|... .|.+.|+|+.++|+.|+++.|+|
T Consensus       163 i~~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~d-nDn~P~F~~~-~y~~~v~En~~~gt~v~~v~A~D  240 (316)
T 3ubf_A          163 VRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMP-SYEAEIPENQKKDSDIISIKAKS  240 (316)
T ss_dssp             EEECSSCCCCTTCEEEEEEEEEESCC-------CBCCCEEEEEEE-SCCCCEESSS-SEEEEEETTCCTTCEEEECCEEC
T ss_pred             EEECCcCCcccCcEEEEEEEEEeCCCCCCCccccceEEEEEEEEc-CCCCCEEcCC-CceEEEeCCCCCCCEEEEEEEEe
Confidence            78899999999999999999999885    357788899999999 9999999988 78999999999999999999999


Q ss_pred             CCCCCCcEEEEEEe-eCCCCCCcccEEEeCCceEEEECccCCccCC---CEEEEEEEEEe-CCCCCcceeEEEEEEEEec
Q psy8618          78 KDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSVLDHEDR---SIYRIAVAATD-NGFPSRQTVRLLRVEVLDL  152 (232)
Q Consensus        78 ~D~~~~~~v~y~i~-~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~---~~~~l~v~a~d-~~~~~~~~~~~v~i~v~d~  152 (232)
                      +|   ++.++|+|. .+   +..++|.|++.+|.|++.+.||||..   ..|.|.|.|+| ++  ++++.+.|.|+|.|+
T Consensus       241 ~D---n~~i~Y~i~~~~---~~~~~F~Id~~tG~i~~~~~LD~E~~~~~~~y~l~V~A~dd~g--~~~~~~~v~I~V~Dv  312 (316)
T 3ubf_A          241 FA---DREIRYTLKAQG---QGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG--GFSTSVDLTIRVTDV  312 (316)
T ss_dssp             TT---CCCEEEEEEEES---SCTTTEEECTTTCEEEECSCCCSSCTTSCSEEEEEEEEEESSS--SCEEEEEEEEEEECC
T ss_pred             CC---CCEEEEEEEcCC---CCCCeEEEECCeEEEEECCcCCccccCCCceEEEEEEEEECCC--CCEEEEEEEEEEEec
Confidence            98   567999997 44   56789999999999999999999987   79999999995 44  578899999999999


Q ss_pred             CCCC
Q psy8618         153 NDNR  156 (232)
Q Consensus       153 Nd~~  156 (232)
                      |||+
T Consensus       313 NDn~  316 (316)
T 3ubf_A          313 NDNA  316 (316)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            9986

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.97  E-value=1.8e-29  Score=197.71  Aligned_cols=173  Identities=24%  Similarity=0.361  Sum_probs=140.3

Q ss_pred             ceEEEEecCCCCCcEEEEEEE-EeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEEC---ccCCccCCCEEEEEEE
Q psy8618          55 EDVISVREEQPPGTEVVRARA-VDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTK---SVLDHEDRSIYRIAVA  130 (232)
Q Consensus        55 ~~~~~v~E~~~~g~~v~~v~a-~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~---~~ld~e~~~~~~l~v~  130 (232)
                      .+.+.|+|+++.|+.+..+.+ .|.|.+.++.++|+|..    ....+|.|++.+|.+.+.   +.||||....|.+.+.
T Consensus        21 ~~~vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~----~~~~~f~id~~tg~~~l~~t~~~LDrE~~~~~~~~~~   96 (242)
T 4apx_B           21 ATIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKD----NVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIVV   96 (242)
T ss_dssp             SEEEEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEES----CGGGCEEEETTTTEEEECCTTSCCCCSTTTCCCEEEE
T ss_pred             eEEEEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEec----CCCceEEECCCCCEEEEEecCCceeccCCCceEEEEE
Confidence            467899999999999887555 44555778889999954    456789999999999875   6699998776665555


Q ss_pred             EEeCCCC--CcceeEEEEEEEEecCCCCCeeeCCceEEEEE------------------eecCCCCCCeEEEEEEccCCC
Q psy8618         131 ATDNGFP--SRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVS------------------ASDPDCGVNAMVNYTLGESPS  190 (232)
Q Consensus       131 a~d~~~~--~~~~~~~v~i~v~d~Nd~~P~f~~~~~~~~v~------------------~~D~d~~~~~~i~y~l~~~~~  190 (232)
                      +.+++.+  +..+.+.|.|.|.|+|||+|.|....|.++|.                  |+|+|.+.++.|+|+|..+..
T Consensus        97 ~v~~~~~~~~~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~~~~~~v~A~D~D~g~N~~v~Ysi~~~~~  176 (242)
T 4apx_B           97 QVQCVNKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPE  176 (242)
T ss_dssp             EEEEEETTTCCEEEEEEEEEEECCCCCCCEESSSCEEEEEETTCCTTCEEECTTTTTTSEECCSSGGGGCEEEEEECCTT
T ss_pred             EEEeECCCCCeEEEEEEEEEEEeCCCCCCcccceeeeeEeeeccCCCCEEEEeeecccccccCCCCcCCceEEEEecCCC
Confidence            5443322  44566789999999999999999999987766                  468898889999999987522


Q ss_pred             C---CCcEEEEC-CceEEEEeecCCCccccEEEEEEEEEECCccC
Q psy8618         191 R---TNHFYMKS-VSGEICISQDLDFESRSSYEFPVVATDRGKET  231 (232)
Q Consensus       191 ~---~~~f~i~~-~~G~i~~~~~ld~e~~~~y~l~V~a~D~g~~~  231 (232)
                      .   ...|.|+. .+|.|++.++||||....|.|.|.|+|+|.|+
T Consensus       177 ~~~~~~~F~Id~~~tG~i~~~~~LD~E~~~~y~l~V~A~D~G~~~  221 (242)
T 4apx_B          177 DPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQNL  221 (242)
T ss_dssp             STTHHHHEECSSTTTCCEEECSCCCTTTCCEEEEEEEEEECCSSG
T ss_pred             CcccccceEEcCCCceEEEECCcCChhhCCEEEEEEEEEECCcCc
Confidence            1   34699985 59999999999999999999999999999885

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.96  E-value=2.3e-29  Score=175.16  Aligned_cols=113  Identities=28%  Similarity=0.414  Sum_probs=102.9

Q ss_pred             EEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccC
Q psy8618          38 ISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVL  117 (232)
Q Consensus        38 v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~l  117 (232)
                      |.|.|+|||+|.|.+. .|.+.|+|+.++|+.|+++.|+|+|.|.++.++|+|..+.+.....+|.|++.+|.|++.++|
T Consensus         2 ~~V~DvNDn~P~F~~~-~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~L   80 (114)
T 2ee0_A            2 SSGSSGNDNRPVFKEG-QVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSL   80 (114)
T ss_dssp             CCCCCCCCCCCCCSCS-EEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSCC
T ss_pred             CeEeeCCCCCCCcCCC-cEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEECccC
Confidence            4689999999999998 789999999999999999999999999999999999753222456899999999999999999


Q ss_pred             CccCCCEEEEEEEEEeCCCCCcceeEEEEEEEEecC
Q psy8618         118 DHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLN  153 (232)
Q Consensus       118 d~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d~N  153 (232)
                      |||....|.|.|.|+|++.++  ++++|.|+|.|+|
T Consensus        81 D~E~~~~y~l~V~A~D~g~~~--~~~~v~I~V~DvN  114 (114)
T 2ee0_A           81 DREETAIHKVTVLASDGSSTP--ARATVTINVTDVN  114 (114)
T ss_dssp             CTTTCSEEEEEEEEESSSSSC--EEEEEEEEEECCC
T ss_pred             CcccCcEEEEEEEEEECCCCc--eEEEEEEEEEECC
Confidence            999999999999999998765  7789999999997

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.95  E-value=1.1e-27  Score=187.52  Aligned_cols=146  Identities=26%  Similarity=0.336  Sum_probs=121.4

Q ss_pred             cCCCCcCCCCeEEEEEEEEeCCC--CCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEE-----EEEEe
Q psy8618           5 REPLDREARSSHELVAEARDQGS--PPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVR-----ARAVD   77 (232)
Q Consensus         5 ~~~lD~E~~~~~~l~v~a~d~~~--~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~-----v~a~D   77 (232)
                      .+.||||....|.+.+.+.+.+.  ....+.+.|+|.|.|+|||+|.|.+. .|.+.|+|+.++|+.|.+     +.|+|
T Consensus        80 ~~~LDrE~~~~~~~~~~~v~~~~~~~~~~~~~~V~I~V~DvNDn~P~F~~~-~y~~~v~En~~~Gt~v~~~~~~~v~A~D  158 (242)
T 4apx_B           80 GRVLDRDPPMNIHSIVVQVQCVNKKVGTVIYHEVRIVVRDRNDNSPTFKHE-SYYATVNELTPVGTTIFTGFSGDNGATD  158 (242)
T ss_dssp             TSCCCCSTTTCCCEEEEEEEEEETTTCCEEEEEEEEEEECCCCCCCEESSS-CEEEEEETTCCTTCEEECTTTTTTSEEC
T ss_pred             CCceeccCCCceEEEEEEEEeECCCCCeEEEEEEEEEEEeCCCCCCcccce-eeeeEeeeccCCCCEEEEeeeccccccc
Confidence            47899999877665555544322  24566788999999999999999988 789999999999999976     77999


Q ss_pred             CCCCCCcEEEEEEeeCCCC-CCcccEEEeC-CceEEEECccCCccCCCEEEEEEEEEeCCCCC---cceeEEEEEEEEe
Q psy8618          78 KDDGSNATISYSILKGRDT-DGYGVFTIDP-ISGVIRTKSVLDHEDRSIYRIAVAATDNGFPS---RQTVRLLRVEVLD  151 (232)
Q Consensus        78 ~D~~~~~~v~y~i~~~~~~-~~~~~f~id~-~tG~i~~~~~ld~e~~~~~~l~v~a~d~~~~~---~~~~~~v~i~v~d  151 (232)
                      +|.|.|+.++|+|..+... .....|.|++ .+|.|++.+.||||....|.|.|.|+|+|.|+   +++.+.|+|+|..
T Consensus       159 ~D~g~N~~v~Ysi~~~~~~~~~~~~F~Id~~~tG~i~~~~~LD~E~~~~y~l~V~A~D~G~~~~~~~~~~~~vtVnVe~  237 (242)
T 4apx_B          159 IDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQNLNERRTTTTTLTVDLEH  237 (242)
T ss_dssp             CSSGGGGCEEEEEECCTTSTTHHHHEECSSTTTCCEEECSCCCTTTCCEEEEEEEEEECCSSGGGCCEEEEEEEEEEEC
T ss_pred             CCCCcCCceEEEEecCCCCcccccceEEcCCCceEEEECCcCChhhCCEEEEEEEEEECCcCchhcccCCceEEEEEee
Confidence            9999999999999876421 2346799995 58999999999999999999999999999874   6677888888875

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.92  E-value=1.6e-25  Score=157.67  Aligned_cols=117  Identities=21%  Similarity=0.329  Sum_probs=104.4

Q ss_pred             CCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCC-CCCcccEEEeCCceEEEECccCCccC
Q psy8618          43 VNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRD-TDGYGVFTIDPISGVIRTKSVLDHED  121 (232)
Q Consensus        43 vNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~-~~~~~~f~id~~tG~i~~~~~ld~e~  121 (232)
                      .+.+.|.|..+ .+.+.+.|+.++|+.|+++. +|.|.+.|+.++|+|.++.. ....++|.|++.+|.|++.+.||||.
T Consensus         5 ~~r~~p~f~~~-~~~v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~   82 (123)
T 2yqg_A            5 SSGQKRAWITA-PVALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREE   82 (123)
T ss_dssp             SSCSCCSSCCC-CEEEESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSCCBTTT
T ss_pred             ccccCCccCCC-CEEEEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcccCccc
Confidence            36789999988 67788888889999999999 69998889999999976521 12457899999999999999999999


Q ss_pred             CCEEEEEEEEEeCCCCCcceeEEEEEEEEecCCCCCeeeC
Q psy8618         122 RSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTS  161 (232)
Q Consensus       122 ~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d~Nd~~P~f~~  161 (232)
                      ...|.|.|.|+|++.|++++.+.|.|+|.|+|||+|.|.+
T Consensus        83 ~~~y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F~~  122 (123)
T 2yqg_A           83 TPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ  122 (123)
T ss_dssp             BSEEEEEEEEECTTCCEEEEEECCEEEEECTTCCCCCCCC
T ss_pred             CceEEEEEEEEECCCCceEEEEEEEEEEEEcCCCCCEeCC
Confidence            9999999999999999899999999999999999999975

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.89  E-value=2.5e-23  Score=143.60  Aligned_cols=102  Identities=27%  Similarity=0.387  Sum_probs=80.9

Q ss_pred             ceEEEEecCCCCCcE--EEEEEEEeCCCCCCcEEEEEEeeCC-CCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEE
Q psy8618          55 EDVISVREEQPPGTE--VVRARAVDKDDGSNATISYSILKGR-DTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAA  131 (232)
Q Consensus        55 ~~~~~v~E~~~~g~~--v~~v~a~D~D~~~~~~v~y~i~~~~-~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a  131 (232)
                      .|.+.|+|+++.|+.  ++++   |.|.+.++.++|+|..+. ..+..++|.|++.+|.|++.++||||....|.|.|.|
T Consensus         6 ~~~~~v~En~~~gt~~~v~~v---d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A   82 (110)
T 1ncg_A            6 IPPINLPENSRGPFPQELVRI---RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHA   82 (110)
T ss_dssp             CCCEEECSSCCCCSSEEEEEC---CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEE
T ss_pred             eeeEEEeCCCCCCCcEEEEEE---eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCeEEEEEEE
Confidence            357999999999994  5554   677778999999997531 1245679999999999999999999999999999999


Q ss_pred             EeCCCCCcceeEEEEEEEEecCCCCCee
Q psy8618         132 TDNGFPSRQTVRLLRVEVLDLNDNRPTF  159 (232)
Q Consensus       132 ~d~~~~~~~~~~~v~i~v~d~Nd~~P~f  159 (232)
                      +|++.|++++.+.|.|+|.|+|||+|.|
T Consensus        83 ~D~g~p~~~~~~~v~I~V~DvNDn~P~F  110 (110)
T 1ncg_A           83 VDINGNQVENPIDIVINVIDMNDNRPEF  110 (110)
T ss_dssp             ECTTSCBCSCCEEEEEEEC---------
T ss_pred             EECCCCceeeEEEEEEEEEECCCCCCCC
Confidence            9999999999999999999999999987

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.84  E-value=2.2e-22  Score=141.62  Aligned_cols=105  Identities=20%  Similarity=0.156  Sum_probs=90.2

Q ss_pred             ceEEEEecCCCCCcEEEEEEEEeCCCCCCcEE---EEEEeeCCCCCCcccEEEeCCceEEEECccCCccCC----CEEEE
Q psy8618          55 EDVISVREEQPPGTEVVRARAVDKDDGSNATI---SYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDR----SIYRI  127 (232)
Q Consensus        55 ~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~v---~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~----~~~~l  127 (232)
                      .+.+.|+|+.++|+.|+++ |+|.|.+. +.+   +|+|+++   +...+|.|++.+|.|++.+.||||..    ..|.|
T Consensus        12 ~~~~~V~E~~~~Gt~V~~v-a~D~d~~~-~~i~~~~Y~i~~~---~~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~l   86 (125)
T 1wyj_A           12 TITYSVLEETDRGSLVGNL-AKDLGLSL-RELITRGAQILSK---GNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCIL   86 (125)
T ss_dssp             CCCEEECSSCCTTCEEEES-TTTTTCCH-HHHHHTTCEEECS---SSSCSEEECSSSSEEEESSCCCSTTTCTTCSSCCB
T ss_pred             eEEEEEECCCCCCCEEEEE-EecCCCCC-CceeeEEEEEecC---CCCCeEEEECCccEEEECccccchhhcccCCcEEE
Confidence            4568999999999999999 99988654 234   8999876   55679999999999999999999998    89999


Q ss_pred             EEEEEeCCCCCcceeEEEEEEEEecCCCCCeeeCCceEEE
Q psy8618         128 AVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFK  167 (232)
Q Consensus       128 ~v~a~d~~~~~~~~~~~v~i~v~d~Nd~~P~f~~~~~~~~  167 (232)
                      .|.|.+..  +. ..+.|.|+|.|+|||+|.|....|.++
T Consensus        87 ~v~a~~~~--p~-~~~~V~I~V~DvNDN~P~F~~~~y~vs  123 (125)
T 1wyj_A           87 HFQVLLKS--PV-QFIQGEIQLQDVNDHAPEFMEDESGPS  123 (125)
T ss_dssp             CCEEEETT--TT-EEECCCEEECCCCCCCCCCCCCCCCCC
T ss_pred             EEEEEECC--CC-eEEEEEEEEEEccCCCCcCCCcEEEEe
Confidence            99999743  33 478899999999999999999887654

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.83  E-value=4.7e-20  Score=124.32  Aligned_cols=91  Identities=27%  Similarity=0.302  Sum_probs=82.6

Q ss_pred             eEEEEecCCC--CCcEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEe
Q psy8618          56 DVISVREEQP--PGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD  133 (232)
Q Consensus        56 ~~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d  133 (232)
                      +.+.|+|+.+  .|+.|+++. +|+|.| |+.++|+|..+   ...+.|.|++.+|.|++.++||||....|.|+|.|+|
T Consensus         6 ~~~~v~En~~~~~g~~v~~v~-~D~D~g-Ng~v~Ysi~~~---~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D   80 (99)
T 1zvn_A            6 NQFFVLEEYTGTDPLYVGKLH-SDMDRG-DGSIKYILSGE---GAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALD   80 (99)
T ss_dssp             CEEEEEGGGCSSSCEEEEECC-BTTCCS-SSCEEEEEEET---TBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEE
T ss_pred             cEEEEECCCCCCCCcEEEEEE-ECCCCC-CCEEEEEEeCC---CCCceEEEeCCCCCEEECeecCCccCCeEEEEEEEEE
Confidence            4689999976  689999999 999999 99999999764   4447899999999999999999999999999999999


Q ss_pred             CC-CCCcceeEEEEEEEEe
Q psy8618         134 NG-FPSRQTVRLLRVEVLD  151 (232)
Q Consensus       134 ~~-~~~~~~~~~v~i~v~d  151 (232)
                      .| .|++++.+.|.|+|.|
T Consensus        81 ~G~~p~l~~~~~v~I~V~D   99 (99)
T 1zvn_A           81 RRTGRPMEPESEFIIKIQD   99 (99)
T ss_dssp             TTTCCBSSCCEEEEEEEEC
T ss_pred             CCCCCCcceeEEEEEEEeC
Confidence            99 4889999999999986

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.83  E-value=5.4e-20  Score=123.86  Aligned_cols=91  Identities=25%  Similarity=0.309  Sum_probs=80.2

Q ss_pred             eEEEEecCCC--CCcEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEe
Q psy8618          56 DVISVREEQP--PGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD  133 (232)
Q Consensus        56 ~~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d  133 (232)
                      +.+.|+|+.+  .|+.|+++. +|+|.| |+.++|+|..+   ...++|.|++.+|.|++.++||||....|.|.|.|+|
T Consensus         5 ~~~~v~En~~~p~~~~v~~v~-~D~D~g-N~~v~Ysi~~~---~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D   79 (98)
T 1zxk_A            5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGD---GAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVD   79 (98)
T ss_dssp             CEEEECGGGCSSSCEEEEECC-BCCCCC---CEEEEEEET---TBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEE
T ss_pred             ceEEEECCCCCCCCeEEEEEE-ECCCCC-CCEEEEEEeCC---CCCCEEEEECCccEEEECccCCCcCCCeEEEEEEEEE
Confidence            4689999995  899999997 999999 99999999654   3456899999999999999999999999999999999


Q ss_pred             CCC-CCcceeEEEEEEEEe
Q psy8618         134 NGF-PSRQTVRLLRVEVLD  151 (232)
Q Consensus       134 ~~~-~~~~~~~~v~i~v~d  151 (232)
                      +|. |++++.+.|.|+|.|
T Consensus        80 ~g~~~~l~~~~~v~I~V~D   98 (98)
T 1zxk_A           80 FETNKPLEPPSEFIIKVQD   98 (98)
T ss_dssp             TTTCCBSSCCEEEEEEECC
T ss_pred             CCCCCCcceeEEEEEEEEC
Confidence            997 788999999999875

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.80  E-value=3.2e-19  Score=120.44  Aligned_cols=91  Identities=25%  Similarity=0.278  Sum_probs=81.7

Q ss_pred             EEEEecCCCC--CcEEEEEEEEeCCCCCCcEEEEEEeeC-CCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEe
Q psy8618          57 VISVREEQPP--GTEVVRARAVDKDDGSNATISYSILKG-RDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD  133 (232)
Q Consensus        57 ~~~v~E~~~~--g~~v~~v~a~D~D~~~~~~v~y~i~~~-~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d  133 (232)
                      .+.|+||.+.  |+.|+++.|+|+|.    .++|+|... ...+..+.|.|++.+|.|++.++||||....|.|.|.|+|
T Consensus         6 ~~~V~En~~~~~g~~v~~v~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D   81 (99)
T 3k6d_A            6 SISIPENQRIPFPKIVGRVVVSDRIP----GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTD   81 (99)
T ss_dssp             CEEEETTCCSCSSEEEEECBCSSCCT----TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEC
T ss_pred             cEEEeCCCCCCCCcEEEEEEEECCCC----cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCceEEEEEEEEE
Confidence            5899999999  99999999999996    589999642 1224568999999999999999999999999999999999


Q ss_pred             CCCCCcceeEEEEEEEEe
Q psy8618         134 NGFPSRQTVRLLRVEVLD  151 (232)
Q Consensus       134 ~~~~~~~~~~~v~i~v~d  151 (232)
                      +|.+++++.+.|.|+|.|
T Consensus        82 ~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6d_A           82 ENGKTIEGPVDLEILVID   99 (99)
T ss_dssp             TTCCEEEEEEEEEEEEEC
T ss_pred             CCCCceeeEEEEEEEEEC
Confidence            999999999999999986

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.79  E-value=1.1e-18  Score=118.09  Aligned_cols=91  Identities=24%  Similarity=0.316  Sum_probs=81.1

Q ss_pred             EEEEecCCCC--CcEEEEEEEEeCCCCCCcEEEEEEeeC-CCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEe
Q psy8618          57 VISVREEQPP--GTEVVRARAVDKDDGSNATISYSILKG-RDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD  133 (232)
Q Consensus        57 ~~~v~E~~~~--g~~v~~v~a~D~D~~~~~~v~y~i~~~-~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d  133 (232)
                      .+.|+||.+.  |+.|++|.|+|+|.    .++|+|... ...+..+.|.|++.+|.|++.++||||....|.|.|.|+|
T Consensus         7 ~~~V~EN~~~~~g~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D   82 (100)
T 3k6f_A            7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTD   82 (100)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEC
T ss_pred             cEEEeCCCCCCCCcEEEEEEEEcCCC----CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCEEEEEEEEEE
Confidence            4899999998  89999999999996    489999643 1123467899999999999999999999999999999999


Q ss_pred             CCCCCcceeEEEEEEEEe
Q psy8618         134 NGFPSRQTVRLLRVEVLD  151 (232)
Q Consensus       134 ~~~~~~~~~~~v~i~v~d  151 (232)
                      +|.|++++.+.|.|+|.|
T Consensus        83 ~g~p~l~~~~~v~I~V~D  100 (100)
T 3k6f_A           83 ASGKTLEGPVPLEVIVID  100 (100)
T ss_dssp             TTCCEEEEEEEEEEEEEC
T ss_pred             CCCCcccceEEEEEEEEC
Confidence            999999999999999986

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.78  E-value=1.9e-18  Score=116.72  Aligned_cols=91  Identities=25%  Similarity=0.315  Sum_probs=80.9

Q ss_pred             EEEEecCCCCC--cEEEEEEEEeCCCCCCcEEEEEEeeC-CCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEe
Q psy8618          57 VISVREEQPPG--TEVVRARAVDKDDGSNATISYSILKG-RDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD  133 (232)
Q Consensus        57 ~~~v~E~~~~g--~~v~~v~a~D~D~~~~~~v~y~i~~~-~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d  133 (232)
                      .+.|+||.+.|  +.|++|.|+|+|.    .++|+|... ...+..+.|.|++.+|.|++.++||||....|.|.|.|+|
T Consensus         6 ~~~v~EN~~~g~~~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D   81 (99)
T 3k6i_A            6 PILIPENQRPPFPRSVGKVIRSEGTE----GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTD   81 (99)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCS----SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEE
T ss_pred             cEEEeCCCCCCCCeEEEEEEEEcCCC----eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCEEEEEEEEEE
Confidence            48999999987  8999999999996    699999642 1123457999999999999999999999999999999999


Q ss_pred             CCCCCcceeEEEEEEEEe
Q psy8618         134 NGFPSRQTVRLLRVEVLD  151 (232)
Q Consensus       134 ~~~~~~~~~~~v~i~v~d  151 (232)
                      .|.|++++.+.|.|+|.|
T Consensus        82 ~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6i_A           82 LSGKIIDGPVRLDISVID   99 (99)
T ss_dssp             TTSCEEEEEEEEEEEEEC
T ss_pred             CCCCceeeeEEEEEEEEC
Confidence            999999999999999986

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.77  E-value=1.5e-18  Score=118.40  Aligned_cols=93  Identities=23%  Similarity=0.280  Sum_probs=79.9

Q ss_pred             EEEEecCCC--CCcEEEEEEEEeCCCCCCcEEEEEEeeCCC-CCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEe
Q psy8618          57 VISVREEQP--PGTEVVRARAVDKDDGSNATISYSILKGRD-TDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATD  133 (232)
Q Consensus        57 ~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~-~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d  133 (232)
                      .+.|+|+.+  .|+.|+++.| |.  +.|+.++|+|..+.. ....++|.|++.+|.|++.++||||....|.|.|.|+|
T Consensus        10 ~~~V~En~~~~~~~~v~~v~A-d~--g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~l~V~A~D   86 (105)
T 2omz_B           10 PISCPENEKGPFPKNLVQIKS-NK--DKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVS   86 (105)
T ss_dssp             CCCEESSCCSSSSEEEEECEE-GG--GGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEC
T ss_pred             CEEEeCCCCCCCCcEEEEEEC-CC--CCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEEEEEEEEE
Confidence            478999999  5889999999 33  478999999976521 11246899999999999999999999999999999999


Q ss_pred             CCCCCcceeEEEEEEEEec
Q psy8618         134 NGFPSRQTVRLLRVEVLDL  152 (232)
Q Consensus       134 ~~~~~~~~~~~v~i~v~d~  152 (232)
                      .|.|++++.+.|.|+|.|+
T Consensus        87 ~g~p~~~~~~~v~I~V~Dv  105 (105)
T 2omz_B           87 SNGNAVEDPMEILITVTDQ  105 (105)
T ss_dssp             TTSCBSSCCEEEEEEEEC-
T ss_pred             CCCCceeeEEEEEEEEEeC
Confidence            9999999999999999985

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1e-19  Score=126.23  Aligned_cols=85  Identities=26%  Similarity=0.420  Sum_probs=74.3

Q ss_pred             EEEEecCCCCCeeeCCceEEEEEe-------------ecCCCCCCeEEEEEEccCC--CCCCcEEEECCceEEEEeecCC
Q psy8618         147 VEVLDLNDNRPTFTSSSLLFKVSA-------------SDPDCGVNAMVNYTLGESP--SRTNHFYMKSVSGEICISQDLD  211 (232)
Q Consensus       147 i~v~d~Nd~~P~f~~~~~~~~v~~-------------~D~d~~~~~~i~y~l~~~~--~~~~~f~i~~~~G~i~~~~~ld  211 (232)
                      |.|.|+|||+|.|....|.++|.|             +|+|.+.++.|+|+|....  +....|.|++.+|.|++.++||
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~LD   81 (114)
T 2ee0_A            2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLD   81 (114)
T ss_dssp             CCCCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSCCC
T ss_pred             CeEeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEECccCC
Confidence            468999999999999988776665             8889888889999998521  3457899999999999999999


Q ss_pred             CccccEEEEEEEEEECCccC
Q psy8618         212 FESRSSYEFPVVATDRGKET  231 (232)
Q Consensus       212 ~e~~~~y~l~V~a~D~g~~~  231 (232)
                      ||....|.|.|.|+|+|.|+
T Consensus        82 ~E~~~~y~l~V~A~D~g~~~  101 (114)
T 2ee0_A           82 REETAIHKVTVLASDGSSTP  101 (114)
T ss_dssp             TTTCSEEEEEEEEESSSSSC
T ss_pred             cccCcEEEEEEEEEECCCCc
Confidence            99999999999999999874

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=3.1e-19  Score=124.89  Aligned_cols=85  Identities=27%  Similarity=0.422  Sum_probs=74.2

Q ss_pred             EEEEecCCCCCeeeCCceEEEEEe-------------ecCCCCCCeEEEEEEccCCC-CCCcEEEECCceEEEEeecCCC
Q psy8618         147 VEVLDLNDNRPTFTSSSLLFKVSA-------------SDPDCGVNAMVNYTLGESPS-RTNHFYMKSVSGEICISQDLDF  212 (232)
Q Consensus       147 i~v~d~Nd~~P~f~~~~~~~~v~~-------------~D~d~~~~~~i~y~l~~~~~-~~~~f~i~~~~G~i~~~~~ld~  212 (232)
                      ++|.|+|||+|.|....|.++|.|             +|+|.+.++.|+|+|..+.. ....|.|++.+|.|++.++|||
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~LD~   81 (119)
T 2yst_A            2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDR   81 (119)
T ss_dssp             CCCCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCEEEECSCCCT
T ss_pred             CeEecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceEEEECccCCc
Confidence            468999999999999988776665             78888888899999987521 1468999999999999999999


Q ss_pred             ccccEEEEEEEEEECCccC
Q psy8618         213 ESRSSYEFPVVATDRGKET  231 (232)
Q Consensus       213 e~~~~y~l~V~a~D~g~~~  231 (232)
                      |....|.|.|.|+|+|.|+
T Consensus        82 E~~~~y~l~V~A~D~g~p~  100 (119)
T 2yst_A           82 EEVNQLRFTVMARDRGQPP  100 (119)
T ss_dssp             TTCSEEEEEEEECCSBTTB
T ss_pred             ccCCEEEEEEEEEECCCCC
Confidence            9999999999999999875

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=99.62  E-value=8.3e-17  Score=109.32  Aligned_cols=94  Identities=26%  Similarity=0.261  Sum_probs=73.7

Q ss_pred             ceEEEEecCCCCCcEEEEEEEEeCCCCCC--cEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCC----CEEEEE
Q psy8618          55 EDVISVREEQPPGTEVVRARAVDKDDGSN--ATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDR----SIYRIA  128 (232)
Q Consensus        55 ~~~~~v~E~~~~g~~v~~v~a~D~D~~~~--~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~----~~~~l~  128 (232)
                      .+.+.|+|+.++|+.|+++ |.|.|.+.+  ..++|+|.++   +...+|.|++.||.|++.+.||||..    ..|.+.
T Consensus         4 ~~~~~V~E~~~~Gt~Vg~v-a~D~~~~~~~~~~~~y~i~~~---~~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~   79 (103)
T 1wuz_A            4 QIHYSIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASK---DRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIH   79 (103)
T ss_dssp             EEEEEEESSCCTTCBCCCH-HHHHTCCHHHHTTTTBCCBCS---SCSCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEE
T ss_pred             eEEEEEECCCCCCCEEEEE-EeccCCCCcccccEEEEEEeC---CCccEEEEECCeEEEEECCcCccccccCCCCcEEEE
Confidence            4678999999999999999 999885422  3578999776   55789999999999999999999975    233444


Q ss_pred             EEEEeCCCCCcceeEEEEEEEEecCCC
Q psy8618         129 VAATDNGFPSRQTVRLLRVEVLDLNDN  155 (232)
Q Consensus       129 v~a~d~~~~~~~~~~~v~i~v~d~Nd~  155 (232)
                      +.+... .| . ..+.|.|+|.|+|||
T Consensus        80 ~~v~~~-~p-~-~~~~v~I~V~DiNDN  103 (103)
T 1wuz_A           80 LEVIVD-RP-L-QVFHVEVEVRDINDN  103 (103)
T ss_dssp             EEEEET-TT-T-EEEEEEEEEECCSCC
T ss_pred             EEEEEC-CC-C-EEEEEEEEEEEcCCC
Confidence            444433 23 2 378899999999997

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.48  E-value=1.1e-13  Score=93.09  Aligned_cols=66  Identities=30%  Similarity=0.399  Sum_probs=59.0

Q ss_pred             ceEEEEEeecCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCccccEEEEEEEEEECCc-cC
Q psy8618         163 SLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGK-ET  231 (232)
Q Consensus       163 ~~~~~v~~~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a~D~g~-~~  231 (232)
                      ...++|. +|+|.+ |+.|+|+|.++ +....|.|++.+|.|++.++||||....|.|.|.|+|+|. |+
T Consensus        20 ~~v~~v~-~D~D~g-Ng~v~Ysi~~~-~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~G~~p~   86 (99)
T 1zvn_A           20 LYVGKLH-SDMDRG-DGSIKYILSGE-GAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRP   86 (99)
T ss_dssp             EEEEECC-BTTCCS-SSCEEEEEEET-TBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCCB
T ss_pred             cEEEEEE-ECCCCC-CCEEEEEEeCC-CCCceEEEeCCCCCEEECeecCCccCCeEEEEEEEEECCCCCC
Confidence            4577888 999999 99999999874 4457899999999999999999999999999999999994 64

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.48  E-value=1.2e-13  Score=92.72  Aligned_cols=64  Identities=23%  Similarity=0.395  Sum_probs=55.4

Q ss_pred             ceEEEEEeecCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCccccEEEEEEEEEECCc
Q psy8618         163 SLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGK  229 (232)
Q Consensus       163 ~~~~~v~~~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a~D~g~  229 (232)
                      ...+.|. +|+|.+ |+.|+|+|.++ +....|.|++.+|.|++.++||||....|.|.|.|+|+|.
T Consensus        19 ~~v~~v~-~D~D~g-N~~v~Ysi~~~-~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g~   82 (98)
T 1zxk_A           19 ILVGRLH-TDLDPG-SKKIKYILSGD-GAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFET   82 (98)
T ss_dssp             EEEEECC-BCCCCC---CEEEEEEET-TBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTT
T ss_pred             eEEEEEE-ECCCCC-CCEEEEEEeCC-CCCCEEEEECCccEEEECccCCCcCCCeEEEEEEEEECCC
Confidence            4567776 999999 99999999874 4456899999999999999999999999999999999997

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=1.6e-13  Score=96.10  Aligned_cols=52  Identities=29%  Similarity=0.379  Sum_probs=49.1

Q ss_pred             CeEecCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecC
Q psy8618           1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVD   52 (232)
Q Consensus         1 ~i~~~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~   52 (232)
                      .|.++++||||.+..|.|+|.|+|+|.|++++.+.|.|.|.|+|||+|.|.+
T Consensus        71 ~i~~~~~LDrE~~~~y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F~~  122 (123)
T 2yqg_A           71 ELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ  122 (123)
T ss_dssp             EEEECSCCBTTTBSEEEEEEEEECTTCCEEEEEECCEEEEECTTCCCCCCCC
T ss_pred             EEEECcccCcccCceEEEEEEEEECCCCceEEEEEEEEEEEEcCCCCCEeCC
Confidence            3788999999999999999999999998899999999999999999999975

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.41  E-value=1.7e-13  Score=94.12  Aligned_cols=50  Identities=36%  Similarity=0.527  Sum_probs=38.9

Q ss_pred             CeEecCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCee
Q psy8618           1 EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPEL   50 (232)
Q Consensus         1 ~i~~~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f   50 (232)
                      .|.++++||||.+..|.|+|.|+|+|+|++++.+.|+|.|+|+|||+|.|
T Consensus        61 ~i~~~~~LDrE~~~~y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F  110 (110)
T 1ncg_A           61 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF  110 (110)
T ss_dssp             EEEECSCCCTTTCCEEEEEEEEECTTSCBCSCCEEEEEEEC---------
T ss_pred             EEEECCcCCcccCCeEEEEEEEEECCCCceeeEEEEEEEEEECCCCCCCC
Confidence            37889999999999999999999999988999999999999999999987

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.34  E-value=3.1e-12  Score=86.04  Aligned_cols=66  Identities=23%  Similarity=0.325  Sum_probs=58.0

Q ss_pred             CceEEEEEeecCCCCCCeEEEEEEccC---CCCCCcEEEECCceEEEEeecCCCccccEEEEEEEEEECCccC
Q psy8618         162 SSLLFKVSASDPDCGVNAMVNYTLGES---PSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGKET  231 (232)
Q Consensus       162 ~~~~~~v~~~D~d~~~~~~i~y~l~~~---~~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a~D~g~~~  231 (232)
                      +.+.++|.|+|+|.    .|+|+|.+.   .+..+.|.|++.+|.|++.++||||....|.|.|.|+|+|.|+
T Consensus        18 ~~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g~~~   86 (99)
T 3k6i_A           18 PRSVGKVIRSEGTE----GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDLSGKI   86 (99)
T ss_dssp             CEEEEECEETTCCS----SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEETTSCE
T ss_pred             CeEEEEEEEEcCCC----eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCEEEEEEEEEECCCCc
Confidence            35688999999997    789999853   1345799999999999999999999999999999999999875

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.33  E-value=1.8e-12  Score=88.09  Aligned_cols=66  Identities=15%  Similarity=0.226  Sum_probs=56.6

Q ss_pred             eEEEEEeecCCCCCCeEEEEEEccCCCC---CCcEEEECCceEEEEeecCCCccccEEEEEEEEEECCccCC
Q psy8618         164 LLFKVSASDPDCGVNAMVNYTLGESPSR---TNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGKETQ  232 (232)
Q Consensus       164 ~~~~v~~~D~d~~~~~~i~y~l~~~~~~---~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a~D~g~~~q  232 (232)
                      ..++|.+   |.+.|+.|+|+|.++...   .+.|.|++.+|.|++.++||||....|.|.|.|+|+|.|++
T Consensus        24 ~v~~v~A---d~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~l~V~A~D~g~p~~   92 (105)
T 2omz_B           24 NLVQIKS---NKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAV   92 (105)
T ss_dssp             EEEECEE---GGGGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTTSCBS
T ss_pred             EEEEEEC---CCCCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEEEEEEEEECCCCce
Confidence            5678888   556789999999875211   46899999999999999999999999999999999998863

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.31  E-value=3.1e-12  Score=86.16  Aligned_cols=66  Identities=23%  Similarity=0.296  Sum_probs=57.7

Q ss_pred             CceEEEEEeecCCCCCCeEEEEEEccC---CCCCCcEEEECCceEEEEeecCCCccccEEEEEEEEEECCccC
Q psy8618         162 SSLLFKVSASDPDCGVNAMVNYTLGES---PSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGKET  231 (232)
Q Consensus       162 ~~~~~~v~~~D~d~~~~~~i~y~l~~~---~~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a~D~g~~~  231 (232)
                      ..+.++|.|+|+|.    .|+|+|.+.   .+....|.|++.+|.|++.++||||....|.|.|.|+|+|.|+
T Consensus        19 g~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~p~   87 (100)
T 3k6f_A           19 PRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKT   87 (100)
T ss_dssp             CEEEEECEETTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECTTCCE
T ss_pred             CcEEEEEEEEcCCC----CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCEEEEEEEEEECCCCc
Confidence            45678999999997    579999752   2345899999999999999999999999999999999999875

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.29  E-value=3.9e-12  Score=85.51  Aligned_cols=66  Identities=26%  Similarity=0.297  Sum_probs=57.4

Q ss_pred             CceEEEEEeecCCCCCCeEEEEEEccC---CCCCCcEEEECCceEEEEeecCCCccccEEEEEEEEEECCccC
Q psy8618         162 SSLLFKVSASDPDCGVNAMVNYTLGES---PSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGKET  231 (232)
Q Consensus       162 ~~~~~~v~~~D~d~~~~~~i~y~l~~~---~~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a~D~g~~~  231 (232)
                      ....++|.++|+|.    .|+|+|.+.   .+..+.|.|++.+|.|++.++||||....|.|.|.|+|+|.|+
T Consensus        18 g~~v~~v~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~~~   86 (99)
T 3k6d_A           18 PKIVGRVVVSDRIP----GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTDENGKT   86 (99)
T ss_dssp             SEEEEECBCSSCCT----TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTTCCE
T ss_pred             CcEEEEEEEECCCC----cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCceEEEEEEEEECCCCc
Confidence            34578899998887    689999752   2456899999999999999999999999999999999999875

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.07  E-value=3e-11  Score=84.62  Aligned_cols=53  Identities=30%  Similarity=0.372  Sum_probs=45.3

Q ss_pred             eEecCCCCcCCC----CeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEE
Q psy8618           2 ISTREPLDREAR----SSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVI   58 (232)
Q Consensus         2 i~~~~~lD~E~~----~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~   58 (232)
                      |.++++||||+.    ..|.|++.|.+..  +. ..+.|.|.|+|+|||+|.|..+ .|.+
T Consensus        66 i~~~~~LDRE~~c~~~~~y~l~v~a~~~~--p~-~~~~V~I~V~DvNDN~P~F~~~-~y~v  122 (125)
T 1wyj_A           66 LLLKEKLDREELCGSTNPCILHFQVLLKS--PV-QFIQGEIQLQDVNDHAPEFMED-ESGP  122 (125)
T ss_dssp             EEESSCCCSTTTCTTCSSCCBCCEEEETT--TT-EEECCCEEECCCCCCCCCCCCC-CCCC
T ss_pred             EEECccccchhhcccCCcEEEEEEEEECC--CC-eEEEEEEEEEEccCCCCcCCCc-EEEE
Confidence            788999999999    9999999999743  33 4789999999999999999987 5543

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=98.16  E-value=1.7e-06  Score=58.17  Aligned_cols=58  Identities=14%  Similarity=0.214  Sum_probs=40.9

Q ss_pred             EEEEEeecCCCCCC--eEEEEEEccCCCCCCcEEEECCceEEEEeecCCCcccc------EEEEEEEE
Q psy8618         165 LFKVSASDPDCGVN--AMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRS------SYEFPVVA  224 (232)
Q Consensus       165 ~~~v~~~D~d~~~~--~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~------~y~l~V~a  224 (232)
                      +..| +.|+|...+  +.+.|+|..+ +..++|.|++.+|.|.+.++||||...      .|.+.|.+
T Consensus        19 Vg~v-a~D~~~~~~~~~~~~y~i~~~-~~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~~~v~~   84 (103)
T 1wuz_A           19 VGRI-AQDLGLELTELVPRLFRVASK-DRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIV   84 (103)
T ss_dssp             CCCH-HHHHTCCHHHHTTTTBCCBCS-SCSCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEEEEEEE
T ss_pred             EEEE-EeccCCCCcccccEEEEEEeC-CCccEEEEECCeEEEEECCcCccccccCCCCcEEEEEEEEE
Confidence            4445 455544321  2457999865 567899999999999999999999752      45555554

>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A

Probab=95.04  E-value=0.71  Score=33.98  Aligned_cols=116  Identities=16%  Similarity=0.072  Sum_probs=61.1

Q ss_pred             CCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCCeecCCCceEEEEecCCC---CC-cEEEEEEEEeCCCCCCcEEEE
Q psy8618          13 RSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAPELVDPQEDVISVREEQP---PG-TEVVRARAVDKDDGSNATISY   88 (232)
Q Consensus        13 ~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~---~g-~~v~~v~a~D~D~~~~~~v~y   88 (232)
                      .-.|.|++.|+|..+.. +....+.|.|.+  ..+|..      .+..+.+..   .| ..-....|.|.|. .=..+.|
T Consensus        60 ~G~htlta~A~D~aGn~-s~s~~v~vtV~~--~~~Ptv------~itsP~~g~~~~~~~~vtl~~~AsD~~g-~V~~Ve~  129 (190)
T 3pdd_A           60 VGAYNLKAVAVLSDGRR-IESPVTPVLVKV--IVKPTV------KLTAPKSNVVAYGNEFLKITATASDSDG-KISRVDF  129 (190)
T ss_dssp             SEEEEEEEEEEETTSCE-EECCCEEEEEEC--CCCCEE------EEEECCTTCCCBTTSEEEEEEEEECSSS-CEEEEEE
T ss_pred             CccEEEEEEEEECCCCE-eeecceeEEecc--CCCCce------eecCCCCCcEEecCCeEEEEEEEECCCC-cEEEEEE
Confidence            45899999999987632 223346666665  347743      233444322   23 3445667777652 1123444


Q ss_pred             EEeeCCCCCCcccEEEeCC-ceEEEECccCCccCCCEEEEEEEEEeCCCCCcceeEEEEEEEEe
Q psy8618          89 SILKGRDTDGYGVFTIDPI-SGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD  151 (232)
Q Consensus        89 ~i~~~~~~~~~~~f~id~~-tG~i~~~~~ld~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d  151 (232)
                      .+. |      ....-+.. ........     ..+.|+|.++|+|..... +....|.|+|.+
T Consensus       130 ~~d-g------~~v~t~t~~~y~~~~~~-----~~G~~tl~a~A~D~aGn~-s~s~~vtvtv~~  180 (190)
T 3pdd_A          130 LVD-G------EVIGSDREAPYEYEWKA-----VEGNHEISVIAYDDDDAA-STPDSVKIFVKQ  180 (190)
T ss_dssp             EET-T------EEEEEECSSSEEEEEEC-----CSEEEEEEEEEEETTCCB-CCCEEEEEEEBC
T ss_pred             EEC-C------EEEecccCCCEEEEEec-----CCeeEEEEEEEEECCCCE-EecceEEEEECC
Confidence            441 1      11111110 01111111     457899999999986532 234556776643

>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1

Probab=92.77  E-value=1.2  Score=31.78  Aligned_cols=79  Identities=9%  Similarity=0.146  Sum_probs=57.6

Q ss_pred             CCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEE
Q psy8618          46 NAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIY  125 (232)
Q Consensus        46 ~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~  125 (232)
                      .-|-|... .|...++-+...|..+++|.-.|..  .+..+.|.-      .+..-|.|+. .|.|.+.+.+-.- ...-
T Consensus        32 C~pGF~~~-~~~~~vp~~l~~g~~lgkV~F~dC~--g~~~~~~~s------sDp~dFkV~~-DGtVya~r~v~L~-~~~~  100 (159)
T 1op4_A           32 CKTGFPED-VYSAVLPKDVHEGQPLLNVKFSNCN--RKRKVQYES------SEPADFKVDE-DGTVYAVRSFPLT-AEQA  100 (159)
T ss_dssp             CCCBCCSC-EEEECCCCSSCSSCCEEECCCBCCS--SCCCEEEEC------CCSSEEEEET-TTEEEEESCCSCS-SSCE
T ss_pred             ccCCcCcc-eeEEeccccccCCceeceeecccCC--CCCceeEEc------CCCCCeEEeC-CCcEEEecceeec-CCCc
Confidence            46889877 6667777888899999999998886  344466755      2233599998 7999998886432 2234


Q ss_pred             EEEEEEEeCC
Q psy8618         126 RIAVAATDNG  135 (232)
Q Consensus       126 ~l~v~a~d~~  135 (232)
                      .|.|.|.|..
T Consensus       101 ~F~V~a~D~~  110 (159)
T 1op4_A          101 KFLIYAQDKE  110 (159)
T ss_dssp             EEEEEEEETT
T ss_pred             EEEEEEEcCC
Confidence            7889999954

>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A

Probab=91.48  E-value=4.3  Score=32.08  Aligned_cols=117  Identities=19%  Similarity=0.260  Sum_probs=55.2

Q ss_pred             CCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECc--------
Q psy8618          44 NDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKS--------  115 (232)
Q Consensus        44 Nd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~--------  115 (232)
                      +|+++.|... .-...+.|+.  |+....|.-. .+......+.|+...|....... |.  +.+|.|....        
T Consensus         6 dd~~g~i~F~-~~~y~V~E~~--g~v~vtV~R~-g~~~~~vtV~y~T~~GTA~ag~D-y~--~~~gtl~F~~Get~kti~   78 (298)
T 3rb5_A            6 ADDPIRMYFE-PGHYTVMENC--GEFEVRVVRR-GDISTYASVEYETQDGTASAGTD-FV--GRKGLLSFPPGVDEQRFR   78 (298)
T ss_dssp             -----CEEES-SSEEEEETTS--CCEECCEEEC-SCCSSCEEEEEEEEESSSCBTTT-BC--CCEEEEEECTTCCEECCE
T ss_pred             CCCceEEEEe-CCEEEEecCc--eEEEEEEEEE-CCCCccEEEEEEeeCCccCCCCC-cc--ccceEEEECCCceEEEEE
Confidence            4556666665 3457899986  4444444333 24334556899887775422111 11  1234333321        


Q ss_pred             --cCC---ccCCCEEEEEEEEEeC-CCCCcceeEEEEEEEEecCCCCCeeeCCceEEEEEe
Q psy8618         116 --VLD---HEDRSIYRIAVAATDN-GFPSRQTVRLLRVEVLDLNDNRPTFTSSSLLFKVSA  170 (232)
Q Consensus       116 --~ld---~e~~~~~~l~v~a~d~-~~~~~~~~~~v~i~v~d~Nd~~P~f~~~~~~~~v~~  170 (232)
                        -+|   +|....|.  |..+.. +..........+|+|.| ||++|.|....-.++|.|
T Consensus        79 V~I~dD~~~E~dEtF~--v~Ls~p~~~a~lg~~~~atvtI~d-dD~~g~~~f~~~~~~V~E  136 (298)
T 3rb5_A           79 IEVIDDDVFEEDECFY--IRLFNPSEGVKLAVPMIATVMILD-DDHAGIFAFTDSVFEITE  136 (298)
T ss_dssp             ECBCCCSSCCCCEEEE--EEEECCCTTCCBCSCSEEEEEEEC-CCCCCEEECSCSEEEECT
T ss_pred             EEEeCCCCccCcEEEE--EEEeCCCCCcEECCCceEEEEEec-cccccccccccccEEeec
Confidence              122   33334444  444443 11222233345666776 677898765443344444

>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}

Probab=89.17  E-value=8.5  Score=32.11  Aligned_cols=70  Identities=20%  Similarity=0.228  Sum_probs=46.3

Q ss_pred             EeCCCCCCcEEEEEEeeCCCC-CCcccEEEe-CCceEEEECccCCccCCCEEEEEEEEEeCCCCCcceeEEEEEEE
Q psy8618          76 VDKDDGSNATISYSILKGRDT-DGYGVFTID-PISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEV  149 (232)
Q Consensus        76 ~D~D~~~~~~v~y~i~~~~~~-~~~~~f~id-~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v  149 (232)
                      +|+|   +..++|+...-..+ .......|. .....+++..+-+ +....+.|.++++|.+.|.+++...|.|+|
T Consensus       365 sDPD---GD~LtY~W~q~~g~g~~~~~vtls~~~~~~~sft~P~~-~~~~tl~f~LtVTD~~~p~lTs~~rViVtV  436 (437)
T 2yhg_A          365 SDPD---GDSLNYSWSHYGEADSYSGSVSISNSSSASANVQIPSN-AGGKDIHILLTLRDNGSPNLYAYRRVVINV  436 (437)
T ss_dssp             BCTT---CCCEEEEEEECTTTSSCCSCCCEETTTSSEEEEECCTT-CTTCEEEEEEEEEECSSSCCEEEEEEEEEE
T ss_pred             eCCC---CCeEEEEEEEeCCCCccccceEeecCCCceEEEEeCCC-CCCcEEEEEEEEEeCCCCCccEEeEEEEEe
Confidence            3665   45689988543211 111235554 4445666665543 356789999999999988888888888876

>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane, transmembrane, membrane; 2.25A {Drosophila melanogaster} SCOP: b.1.27.0

Probab=88.92  E-value=4.2  Score=27.99  Aligned_cols=46  Identities=20%  Similarity=0.172  Sum_probs=24.9

Q ss_pred             CCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCC
Q psy8618          46 NAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRD   95 (232)
Q Consensus        46 ~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~   95 (232)
                      +.+.+... .-...+.|+.  |+....|.-. .+......+.|+...|..
T Consensus         3 ~~~~i~F~-~~~y~V~E~~--g~~~v~V~R~-g~~~~~v~V~y~t~~gTA   48 (137)
T 3ead_A            3 DPIRMYFE-PGHYTVMENC--GEFEVRVVRR-GDISTYASVEYETQDGTA   48 (137)
T ss_dssp             --CEEEES-SCEEEEEGGG--CEEEEEEEEE-SCCSSCEEEEEEEECSSS
T ss_pred             CCEEEEEc-CCEEEEECCC--eEEEEEEEEE-CCCCceEEEEEEeECCCc
Confidence            34444443 3357888876  4444444333 243345568898877754

>3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain 1, antiport, calcium transport, calmodulin-binding, cell membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A* 2fws_A

Probab=85.49  E-value=7.7  Score=27.54  Aligned_cols=58  Identities=10%  Similarity=0.106  Sum_probs=28.6

Q ss_pred             EEEEEEEEeCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCC
Q psy8618          34 VAVKISVTDVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRD   95 (232)
Q Consensus        34 ~~v~v~V~dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~   95 (232)
                      +.+.|.|.|-+. .+.|... .-...+.|+.  |+.-..|.-...+.+....+.|+...|+.
T Consensus        10 ~~~~~~i~ddd~-~g~i~F~-~~~y~V~E~~--G~v~vtV~R~~G~~~~~v~V~y~T~dGTA   67 (160)
T 3gin_A           10 AALEVLFQGPGP-VSKIFFE-QGTYQCLENC--GTVALTIIRRGGDLTNTVFVDFRTEDGTA   67 (160)
T ss_dssp             -----------C-EEEEEES-CSEEEEETTS--SEEEEEEEEESSCTTSCEEEEEEEEESSS
T ss_pred             ceEEEEEecCCC-ccEEEEe-CCEEEEEcCc--EEEEEEEEEccCCCCcEEEEEEEEECCcc
Confidence            445566666443 5666655 3457899986  45545544443443345568998877754

>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.36  E-value=2.3  Score=27.67  Aligned_cols=32  Identities=13%  Similarity=0.189  Sum_probs=26.4

Q ss_pred             CCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCC
Q psy8618          12 ARSSHELVAEARDQGSPPRSSRVAVKISVTDVND   45 (232)
Q Consensus        12 ~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd   45 (232)
                      ....|.+++.++|..+  .++...++|.|...+.
T Consensus        67 ~~G~y~f~LTVtD~~G--~s~s~~v~VtV~~~~~   98 (102)
T 2yrl_A           67 QVGTYVFTLTVKDERN--LQSQSSVNVIVKEESG   98 (102)
T ss_dssp             CSSEEEEEEEEEBTTC--CEEEEEEEEEEECCSS
T ss_pred             CCeEEEEEEEEEeCCC--CEEEeEEEEEEcCCCC
Confidence            4568999999999876  6778889999887665

>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}

Probab=84.18  E-value=5.1  Score=26.20  Aligned_cols=45  Identities=11%  Similarity=0.095  Sum_probs=34.8

Q ss_pred             eEecCCCCcCCCCeEEEEEEEEeCCCCCceeEEEEEEEEEeCCCCCC
Q psy8618           2 ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAP   48 (232)
Q Consensus         2 i~~~~~lD~E~~~~~~l~v~a~d~~~~~~~~~~~v~v~V~dvNd~~P   48 (232)
                      |.+...+|..+.-.|.++..++|..+  ..+++..+|.|.+..+..|
T Consensus        47 I~V~g~Vdt~k~G~Y~VtY~VtDs~G--n~~t~trtVtV~~~~e~~~   91 (103)
T 2kpn_A           47 IKVDGEVDTTKAGTYVLTYTVTDSKG--HEVTAKQTVTVKVREEVKN   91 (103)
T ss_dssp             CEEESCCCSSSCEEEEEEEEEECTTS--CEEEEEEEEEEECSSCCCC
T ss_pred             EEEeCcccCCCceEEEEEEEEEcCCC--CEEEEEEEEEEeCCCcccC
Confidence            45566788888889999999999876  5667788888887665444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	5e-17
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	9e-06
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	9e-17
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	2e-05
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	8e-15
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	3e-05
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	0.003
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	2e-12
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	7e-06
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	1e-04
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	4e-12
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	1e-04
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	9e-12
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	2e-06
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	7e-04
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	8e-10
d1l3wa5	107	b.1.6.1 (A:434-540) C-cadherin ectodomain {African	3e-09
d1l3wa5	107	b.1.6.1 (A:434-540) C-cadherin ectodomain {African	0.002
d1l3wa5	107	b.1.6.1 (A:434-540) C-cadherin ectodomain {African	0.003
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	4e-09
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	1e-04
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	2e-04
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	4e-05

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 5e-17
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 58  ISVREEQPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSV 116
           IS  E +  G        +  +      + YSI  +G DT   GVF I+  +G ++    
Sbjct: 10  ISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEP 68

Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
           LD E  + Y +   A  +   + +    + + V D
Sbjct: 69  LDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 103

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 9e-06
 Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 3/69 (4%)

Query: 163 SLLFKVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICISQDLDFESRSSYE 219
                +     +      V Y++   G        F ++  +G + +++ LD E  ++Y 
Sbjct: 19  PFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYT 78

Query: 220 FPVVATDRG 228
               A    
Sbjct: 79  LFSHAVSSN 87

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 71.0 bits (173), Expect = 9e-17
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 58  ISVREEQPPGTEVVRARAVDKDDGSNATISYSILKG-RDTDGYGVFTIDPISGVIRTKSV 116
           I V E +  G    R   +  +      + YSI     D    GVF I+  +G +     
Sbjct: 7   IKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP 65

Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
           LD E+   Y ++  A        +    + + V+D
Sbjct: 66  LDREEYDKYVLSSHAVSENGSPVEEPMEITINVID 100

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 163 SLLFKVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICISQDLDFESRSSYE 219
               ++     +      V Y++   G        F ++  +G + +++ LD E    Y 
Sbjct: 16  PFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYV 75

Query: 220 FPVVATDRG 228
               A    
Sbjct: 76  LSSHAVSEN 84

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.0 bits (160), Expect = 8e-15
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 58  ISVREEQPPGTEVVRARAVDKDDGSNATISYSIL-KGRDTDGYGVFTIDPISGVIRTKSV 116
           I++ E    G        +      N ++ YS+   G D    G+F I+PISG +     
Sbjct: 9   INLPENS-RGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67

Query: 117 LDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
           LD E  + + +   A D      +    + + V+D
Sbjct: 68  LDRELIARFHLRAHAVDINGNQVENPIDIVINVID 102

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (92), Expect = 3e-05
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 163 SLLFKVSASDPDCGVNAMVNYTL---GESPSRTNHFYMKSVSGEICISQDLDFESRSSYE 219
               ++         N  + Y++   G     T  F +  +SG++ +++ LD E  + + 
Sbjct: 18  PFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFH 77

Query: 220 FPVVATDRG 228
               A D  
Sbjct: 78  LRAHAVDIN 86

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (77), Expect = 0.003
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 1   EISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTD 42
           ++S  +PLDRE  +   L A A D       + + + I+V D
Sbjct: 61  QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVID 102

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 59.2 bits (142), Expect = 2e-12
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 45  DNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTI 104
           + AP    P    + V E+   G +++   A D D      +SY I      D     T+
Sbjct: 1   NEAPFF-VPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN----DPARWLTV 55

Query: 105 DPISGVIRTKSVLDHED----RSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
           +  +G++     LD E      + Y + +  TD+G         L + VLD
Sbjct: 56  NKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLD 106

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 41.5 bits (96), Expect = 7e-06
 Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 2   ISTREPLDREA----RSSHELVAEARDQGSPPRSSRVAVKISVTDV 43
           ++    LDRE+     +++ ++    D G    +    + + V DV
Sbjct: 62  VTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 38.0 bits (87), Expect = 1e-04
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 19/92 (20%)

Query: 154 DNRPTFTSSSLLFKVS-------------ASDPDCGVNAMVNYTLGESPSRTNHFYMKSV 200
           +  P F  +     VS             A DPD      ++Y +G  P+      +   
Sbjct: 1   NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPA--RWLTVNKD 58

Query: 201 SGEICISQDLDFES----RSSYEFPVVATDRG 228
           +G +  + +LD ES     ++Y   ++ TD G
Sbjct: 59  NGIVTGNGNLDRESEYVKNNTYTVIMLVTDDG 90

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.0 bits (141), Expect = 4e-12
 Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 6/113 (5%)

Query: 44  NDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGS---NATISYSILKG-RDTDGY 99
           NDN PE      +  SV E   PGT V++  A D DD     NA I+Y+I+    +    
Sbjct: 1   NDNRPEFTQEVFEG-SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHK 59

Query: 100 GVFTIDPISGVIRTKSVLDH-EDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
            +FT++  +GVI   +     E    Y + V A D       T     + V D
Sbjct: 60  NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 112

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (88), Expect = 1e-04
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 7   PLDREARSSHELVAEARDQGSPPRSSRVAVKISVTD 42
            LDRE+  ++ LV +A D      S+     I+V D
Sbjct: 77  GLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 112

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 58.1 bits (139), Expect = 9e-12
 Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 44  NDNAPELVDPQEDVISVREEQPPGTEVVRARAVD---KDDGSNATISYSILKGR-DTDGY 99
           NDN P+         SVRE   PGT+V+   A D     D  N  +SYSILK   +    
Sbjct: 2   NDNRPKFTQDVFRG-SVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIP 60

Query: 100 GVFTIDPISGVIR-TKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD 151
            +FTI+  +GVI    + LD E    Y + V ATD             +++ D
Sbjct: 61  NLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 43.1 bits (100), Expect = 2e-06
 Identities = 11/39 (28%), Positives = 14/39 (35%)

Query: 4   TREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTD 42
               LDRE    + L  +A D      S      I +TD
Sbjct: 75  IGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 36.2 bits (82), Expect = 7e-04
 Identities = 20/99 (20%), Positives = 21/99 (21%), Gaps = 26/99 (26%)

Query: 153 NDNRPTFTSSSLLFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEI-------- 204
           NDNRP FT       V            V                  +S  I        
Sbjct: 2   NDNRPKFTQDVFRGSVREGVQ---PGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEP 58

Query: 205 ---------------CISQDLDFESRSSYEFPVVATDRG 228
                           I   LD E    Y   V ATD  
Sbjct: 59  IPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLE 97

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (125), Expect = 8e-10
 Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 8/115 (6%)

Query: 44  NDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDG--SNATISYSILKGRD-TDGYG 100
           NDN PE +    +  SV E   PGT V+   A+D DD    N  + Y I+     T    
Sbjct: 1   NDNRPEFLHQVWNG-SVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPN 59

Query: 101 VFTIDPISGVIRT-KSVLDHEDRSIYRIAVAATDNGFP---SRQTVRLLRVEVLD 151
           +FTI+  +G I T  + LD E    Y + + ATD                + V D
Sbjct: 60  MFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 51.2 bits (121), Expect = 3e-09
 Identities = 19/115 (16%), Positives = 28/115 (24%), Gaps = 10/115 (8%)

Query: 44  NDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFT 103
           NDN P        V ++ ++ P           D D   N       L       +    
Sbjct: 1   NDNGPVP---SPRVFTMCDQNPEP---QVLTISDADIPPNTYPYKVSLSHGSDLTW--KA 52

Query: 104 IDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPT 158
                G     S      +  Y I V  +D     + TV  +   V         
Sbjct: 53  ELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTV--VNATVCSCEGKAIK 105

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 14/88 (15%), Positives = 21/88 (23%), Gaps = 8/88 (9%)

Query: 153 NDNRPTFTSSSLLF--------KVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEI 204
           NDN P  +               ++ SD D   N           S           G  
Sbjct: 1   NDNGPVPSPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTS 60

Query: 205 CISQDLDFESRSSYEFPVVATDRGKETQ 232
            +        +  Y   V+ +D     Q
Sbjct: 61  MLLSPTQQLKKGDYSIYVLLSDAQNNPQ 88

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 34.3 bits (77), Expect = 0.003
 Identities = 6/47 (12%), Positives = 14/47 (29%), Gaps = 2/47 (4%)

Query: 2   ISTREPLDREARSSHELVAEARDQGSPPRSSRVAVKISVTDVNDNAP 48
                P  +  +  + +     D  + P+ + V    +V      A 
Sbjct: 60  SMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVV--NATVCSCEGKAI 104

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 50.8 bits (120), Expect = 4e-09
 Identities = 30/113 (26%), Positives = 40/113 (35%), Gaps = 7/113 (6%)

Query: 44  NDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFT 103
           NDNAP   DP+     V E    G EV R    D D               +  G+   T
Sbjct: 2   NDNAPI-FDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNIT 59

Query: 104 IDPISG--VIRTKSVLDHEDRSIYRIAVAATDN---GFPSRQTVRLLRVEVLD 151
            DP S   ++ T   LD E R  Y + +   +      P   +   + V V D
Sbjct: 60  TDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED 112

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 16/92 (17%)

Query: 153 NDNRPTFTSSS------------LLFKVSASDPDCGVNAMVNYTLGESPSRTNHF----Y 196
           NDN P F   +             + ++S +D D               +    F     
Sbjct: 2   NDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 61

Query: 197 MKSVSGEICISQDLDFESRSSYEFPVVATDRG 228
            +S  G +  ++ LDFE R  Y   +   +  
Sbjct: 62  PESNQGILTTAKGLDFELRKQYVLQITVENAE 93

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 37.3 bits (85), Expect = 2e-04
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 2   ISTREPLDREARSSHELVAEARDQ---GSPPRSSRVAVKISVTDV 43
           ++T + LD E R  + L     +      P  +S   V ++V DV
Sbjct: 69  LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 4e-05
 Identities = 8/142 (5%), Positives = 28/142 (19%), Gaps = 15/142 (10%)

Query: 42  DVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGV 101
           ++                + ++   G  ++  +  + +         S            
Sbjct: 5   EIALCKTGF-PEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESS---------EPA 54

Query: 102 FTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTS 161
                  G +              +  + A D     +  V  + +         P    
Sbjct: 55  DFKVDEDGTVYAVRSFPLTAE-QAKFLIYAQDKETQEKWQVA-VNLSREPTLTEEPMKEP 112

Query: 162 SS---LLFKVSASDPDCGVNAM 180
                ++F    +     +   
Sbjct: 113 HEIEEIVFPRQLAKHSGALQRQ 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.9
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.9
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.88
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.86
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.82
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.81
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.74
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.7
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.69
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.68
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.54
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.54
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.53
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.49
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.28
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.27
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.21
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.18
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.16
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.14
d1u2ca1	103	Dystroglycan, N-terminal domain {Mouse (Mus muscul	93.18
d1u2ca1	103	Dystroglycan, N-terminal domain {Mouse (Mus muscul	91.53

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=3.5e-23  Score=142.01  Aligned_cols=107  Identities=35%  Similarity=0.411  Sum_probs=95.4

Q ss_pred             CCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCC---CCcEEEEEEeeCCCC-CCcccEEEeCCceEEEE-CccCC
Q psy8618          44 NDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDG---SNATISYSILKGRDT-DGYGVFTIDPISGVIRT-KSVLD  118 (232)
Q Consensus        44 Nd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~~v~y~i~~~~~~-~~~~~f~id~~tG~i~~-~~~ld  118 (232)
                      |||+|.|... .|.+.|+|+.++|+.|+++.|+|+|.+   .++.++|+|..+... ....+|.|++.+|.|++ .+.||
T Consensus         1 NDn~P~F~~~-~y~~~V~E~~~~gt~v~~v~A~D~D~g~~~~n~~v~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD   79 (112)
T d1edha2           1 NDNRPEFTQE-VFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD   79 (112)
T ss_dssp             SCCCCEESCS-EEEEEEETTCCTTCEEEECCEECCSCTTTCSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCC
T ss_pred             CCCCCccCCC-EEEEEEECCCCCCCEEEEEEEEecccCCccccceEEEEEecCCccccceeEEEEecccceEEEEecccc
Confidence            8999999988 889999999999999999999999976   367899999876432 23578999999999986 56799


Q ss_pred             ccCCCEEEEEEEEEeCCCCCcceeEEEEEEEEe
Q psy8618         119 HEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD  151 (232)
Q Consensus       119 ~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d  151 (232)
                      ||....|.|.|.|+|++.|++++.+.|.|+|.|
T Consensus        80 ~E~~~~y~l~V~a~D~g~~~~~~~~~v~I~V~D  112 (112)
T d1edha2          80 RESYPTYTLVVQAADLQGEGLSTTAKAVITVKD  112 (112)
T ss_dssp             TTTCCEEEEEEEEETGGGTSCEEEEEEEEEEEC
T ss_pred             cccCcEEEEEEEEEECCCCccEEEEEEEEEEEC
Confidence            999999999999999999999999999999986

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.90  E-value=1.4e-23  Score=144.15  Aligned_cols=108  Identities=35%  Similarity=0.393  Sum_probs=96.3

Q ss_pred             CCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCC---CCcEEEEEEeeCCCC-CCcccEEEeCCceEEEEC-ccC
Q psy8618          43 VNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDG---SNATISYSILKGRDT-DGYGVFTIDPISGVIRTK-SVL  117 (232)
Q Consensus        43 vNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~~v~y~i~~~~~~-~~~~~f~id~~tG~i~~~-~~l  117 (232)
                      .|||+|.|... .|.+.|+|++++|+.|+++.|+|+|.+   .++.+.|+|..+.+. ...++|.|++.+|.|++. +.|
T Consensus         1 eNDn~P~F~~~-~y~~~V~En~~~gt~v~~v~A~D~D~~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~L   79 (113)
T d1l3wa2           1 QNDNRPKFTQD-VFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGL   79 (113)
T ss_dssp             CSCCCCEESSS-CEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCC
T ss_pred             CCCCCCccCCC-eEEEEEECCCCCCCEEEEEEeecccccccccceEEEEEEecCCCCccccceeeeeecceeEEEecccc
Confidence            49999999998 789999999999999999999999976   467899999876532 235789999999999885 579


Q ss_pred             CccCCCEEEEEEEEEeCCCCCcceeEEEEEEEEe
Q psy8618         118 DHEDRSIYRIAVAATDNGFPSRQTVRLLRVEVLD  151 (232)
Q Consensus       118 d~e~~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d  151 (232)
                      |||....|.|.|.|+|.+.+++++.++|.|+|.|
T Consensus        80 D~E~~~~y~l~V~a~D~~~~~~~~~~~v~I~V~D  113 (113)
T d1l3wa2          80 DREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD  113 (113)
T ss_dssp             CTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEEC
T ss_pred             CcccCCEEEEEEEEEECCCCCcEEEEEEEEEEEC
Confidence            9999999999999999988899999999999986

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.88  E-value=2.5e-23  Score=141.51  Aligned_cols=103  Identities=25%  Similarity=0.378  Sum_probs=94.4

Q ss_pred             CCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccC---
Q psy8618          45 DNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHED---  121 (232)
Q Consensus        45 d~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~---  121 (232)
                      ||+|.|... .|.+.|+|+.++|+.|+++.|+|+|.+.++.++|+|..    +..++|.|++.+|.|++.+.||||.   
T Consensus         1 Dn~P~F~~~-~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~----~~~~~F~id~~tG~i~~~~~lD~E~~~~   75 (107)
T d1l3wa4           1 NEAPFFVPA-VSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN----DPARWLTVNKDNGIVTGNGNLDRESEYV   75 (107)
T ss_dssp             CCCCEESSC-EECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECC----CSSCCCEEETTTTEEEECSCCCTTSSSC
T ss_pred             CcCCCcCCC-eEEEEEECCCCCCCEEEEeEEecCCcCcCCceeEEecC----CCcccceeccccceEEEccccChhhccc
Confidence            689999987 78999999999999999999999999999999999954    4568899999999999999999995   


Q ss_pred             -CCEEEEEEEEEeCCCCCcceeEEEEEEEEec
Q psy8618         122 -RSIYRIAVAATDNGFPSRQTVRLLRVEVLDL  152 (232)
Q Consensus       122 -~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d~  152 (232)
                       ...|.+.|.|+|.|.|+++++++|.|+|.||
T Consensus        76 ~~~~y~l~v~a~D~g~p~~~~t~~v~V~V~DV  107 (107)
T d1l3wa4          76 KNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV  107 (107)
T ss_dssp             CSSCCEEEEEEEECSSSCCCCCEEEECCBCCC
T ss_pred             cCCeEEEEEEEEECCcCCcEEEEEEEEEEEeC
Confidence             3679999999999999999999999999885

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=9.3e-22  Score=135.19  Aligned_cols=107  Identities=31%  Similarity=0.372  Sum_probs=88.3

Q ss_pred             CCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCC--CCCcEEEEEEeeCCCC-CCcccEEEeCCceEE-EECccCCc
Q psy8618          44 NDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDD--GSNATISYSILKGRDT-DGYGVFTIDPISGVI-RTKSVLDH  119 (232)
Q Consensus        44 Nd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~--~~~~~v~y~i~~~~~~-~~~~~f~id~~tG~i-~~~~~ld~  119 (232)
                      |||+|+|.+. .|.+.|+|++++|+.|+++.|+|+|.  +.++.++|+|+.+... ....+|.|++.+|.+ ++.+.|||
T Consensus         1 NDn~P~F~~~-~y~~~V~En~~~gt~v~~v~A~D~D~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~   79 (114)
T d1ncja2           1 NDNRPEFLHQ-VWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDR   79 (114)
T ss_dssp             CCSCCCCSCS-EEEEEECSSCCTTCEEEECCC-CCSCTTSTTTCCEEEEEEEESCCSCSCCEEECSSSCEEEECSSCCCT
T ss_pred             CCCCCCcCCC-eEEEEEeCCCCCCCEEEEEEEEECCCCccccceeEEEeccCCcCCCccceEEecCccceEEEecccccc
Confidence            8999999987 78999999999999999999999996  4578899999876432 345789999999975 57788999


Q ss_pred             cCCCEEEEEEEEEeCCCC---CcceeEEEEEEEEe
Q psy8618         120 EDRSIYRIAVAATDNGFP---SRQTVRLLRVEVLD  151 (232)
Q Consensus       120 e~~~~~~l~v~a~d~~~~---~~~~~~~v~i~v~d  151 (232)
                      |....|.|.|.|+|.+.+   .+++.++|.|+|.|
T Consensus        80 E~~~~y~l~V~A~D~~~~~~~~~ss~~~v~I~V~D  114 (114)
T d1ncja2          80 EKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD  114 (114)
T ss_dssp             TTCSEEEEEEEEESGGGCBTTBCEEEEEEEEEEC-
T ss_pred             ccCCEEEEEEEEEECCCCCCCCceEEEEEEEEEEC
Confidence            999999999999996533   24667777777765

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1.7e-20  Score=132.43  Aligned_cols=110  Identities=7%  Similarity=0.079  Sum_probs=96.1

Q ss_pred             eCCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccC
Q psy8618          42 DVNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHED  121 (232)
Q Consensus        42 dvNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~  121 (232)
                      |+|++.|.|.+. .|.+.|+|+.+.|+.|+++.|+|.|.  ++.+.|++.      ....|.|++ +|.|++.++||||.
T Consensus         5 ~~~~c~P~F~~~-~Y~~~V~E~~~~Gt~v~~V~a~D~d~--~~~~~y~~~------~~~~F~i~~-~G~I~~~~~ld~e~   74 (136)
T d1op4a_           5 EIALCKTGFPED-VYSAVLPKDVHEGQPLLNVKFSNCNR--KRKVQYESS------EPADFKVDE-DGTVYAVRSFPLTA   74 (136)
T ss_dssp             CCCCCCCBCCSC-EEEECCCCSSCSSCCEEECCCBCCSS--CCCEEEECC------CSSEEEEET-TTEEEEESCCSCSS
T ss_pred             CCCCccceecCC-eEEEEEECCCCCCCEEEEeEeecCCc--cccceeccc------cceeeeccc-cEEEEEecccCccc
Confidence            789999999998 89999999999999999999999994  556899883      335699998 69999999999996


Q ss_pred             CCEEEEEEEEEeCCCCCcceeEEEEEEEEecCCCCCeeeCCc
Q psy8618         122 RSIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTFTSSS  163 (232)
Q Consensus       122 ~~~~~l~v~a~d~~~~~~~~~~~v~i~v~d~Nd~~P~f~~~~  163 (232)
                      . .|.|.|.|.|++.+.+ +.+.|.|.+.|.|+|.|.|....
T Consensus        75 ~-~y~l~V~A~D~g~~~~-~~t~V~i~v~d~nd~~p~~~~~~  114 (136)
T d1op4a_          75 E-QAKFLIYAQDKETQEK-WQVAVNLSREPTLTEEPMKEPHE  114 (136)
T ss_dssp             S-CEEEEEEEEETTTTEE-EEEEEEECCCCCCCCCCSSCCCC
T ss_pred             c-eEEEEEEEEecCCcce-eeeEEEEEEcccCCCCCcccCCC
Confidence            4 6999999999987654 56789999999999999997554

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.81  E-value=8.3e-20  Score=125.00  Aligned_cols=104  Identities=28%  Similarity=0.337  Sum_probs=87.0

Q ss_pred             CCCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCCCC--cEEEEEEeeCCCCCCcccEEEe----CCceEEEECcc
Q psy8618          43 VNDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSN--ATISYSILKGRDTDGYGVFTID----PISGVIRTKSV  116 (232)
Q Consensus        43 vNd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~--~~v~y~i~~~~~~~~~~~f~id----~~tG~i~~~~~  116 (232)
                      .|||+|+|... .|.+.|+|+ .+|+.|+++.|+|.|.+.+  ..+.|.+ .+   .....|.|.    ..+|.|++.+.
T Consensus         1 aNDn~P~F~~~-~y~~~v~En-~~g~~v~~v~A~D~D~~~~~~~~~~~~~-~~---~~~~~f~i~~~~~~~~g~i~~~~~   74 (113)
T d1l3wa3           1 ANDNAPIFDPK-TYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKI-RV---NEGGFFNITTDPESNQGILTTAKG   74 (113)
T ss_dssp             CCCCCCCBSCS-EEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCB-SC---CTTSCEEEEECTTTCCEEEEESSC
T ss_pred             CCCCCCEeCCC-eEEEEEECC-CCCCEEEEEEEEccccCCcceeEEEEee-cc---ccccceEEEeecCCCceEEEeeee
Confidence            49999999987 789999999 5799999999999998643  3343433 44   556778884    46799999999


Q ss_pred             CCccCCCEEEEEEEEEeC---CCCCcceeEEEEEEEEec
Q psy8618         117 LDHEDRSIYRIAVAATDN---GFPSRQTVRLLRVEVLDL  152 (232)
Q Consensus       117 ld~e~~~~~~l~v~a~d~---~~~~~~~~~~v~i~v~d~  152 (232)
                      ||||....|.|.|.|+|+   +.++++++++|.|+|.||
T Consensus        75 lD~E~~~~y~l~V~a~D~~~~~~~~~~s~~~V~I~V~DV  113 (113)
T d1l3wa3          75 LDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV  113 (113)
T ss_dssp             CCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECC
T ss_pred             cccccCCEEEEEEEEEECCCCCCCceEeEEEEEEEEEeC
Confidence            999999999999999997   556788999999999986

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.74  E-value=3.5e-19  Score=120.68  Aligned_cols=105  Identities=17%  Similarity=0.124  Sum_probs=82.0

Q ss_pred             CCCCCeecCCCceEEEEecCCCCCcEEEEEEEEeCCCCCCc-EEEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCC
Q psy8618          44 NDNAPELVDPQEDVISVREEQPPGTEVVRARAVDKDDGSNA-TISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDR  122 (232)
Q Consensus        44 Nd~~P~f~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~-~v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~  122 (232)
                      |||+|.|...   ...|.|+.+.+.   .|.|+|+|.+.++ .++|+|..+   ....++......|.+...+.+|+|..
T Consensus         1 NDNaP~f~~~---~~~v~e~~~~~~---~v~AtD~D~~~n~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~ld~e~~   71 (107)
T d1l3wa5           1 NDNGPVPSPR---VFTMCDQNPEPQ---VLTISDADIPPNTYPYKVSLSHG---SDLTWKAELDSKGTSMLLSPTQQLKK   71 (107)
T ss_dssp             CCSCCCBSCC---CEEECSSSCCCE---EEEBCCSSCTTTTCCCCCBCCSC---SSSSCBCCBCTTSSEEEEBCSSCCCS
T ss_pred             CCCCCccCCC---EEEEEecCCCce---eEEEEcCccCccceeEeeeeecc---cccccccccccceeeeeeeccccccc
Confidence            8999999754   467999988765   4789999998876 488888654   22333333344555556688999999


Q ss_pred             CEEEEEEEEEeCCCCCcceeEEEEEEEEecCCCCCee
Q psy8618         123 SIYRIAVAATDNGFPSRQTVRLLRVEVLDLNDNRPTF  159 (232)
Q Consensus       123 ~~~~l~v~a~d~~~~~~~~~~~v~i~v~d~Nd~~P~f  159 (232)
                      ..|.|.|.|+|+|.|++.  ++++|+|.|+|||+|.+
T Consensus        72 ~~y~l~V~a~D~G~p~~~--~tv~V~V~Dc~dn~~~c  106 (107)
T d1l3wa5          72 GDYSIYVLLSDAQNNPQL--TVVNATVCSCEGKAIKC  106 (107)
T ss_dssp             SCBCCEEECCSSSCCCEE--EECCEEECSCSSSCCCC
T ss_pred             eeEEEEEEEEeCCCCceE--EEEEEEEEEeeCCcCcc
Confidence            999999999999988764  56899999999999875

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.70  E-value=7.5e-17  Score=107.45  Aligned_cols=94  Identities=21%  Similarity=0.256  Sum_probs=81.7

Q ss_pred             EEEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCCC-CCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeCC
Q psy8618          57 VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGRD-TDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNG  135 (232)
Q Consensus        57 ~~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~~-~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~  135 (232)
                      .+.|+||.+ |.....+.+.|.|.+.++.++|+|..+.. ....++|.|++.+|.|++.++||||....|.|.|.|+|.|
T Consensus         6 ~i~v~EN~~-~~~~~~v~~~~~D~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~I~~~~~lDrE~~~~y~l~V~a~D~g   84 (100)
T d1l3wa1           6 PIKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSEN   84 (100)
T ss_dssp             CEEEESSCC-SSSCEEEEECCCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESS
T ss_pred             CEEEeCCCC-CCCCEEEEEEECCCCCCCcEEEEEEeCCCCCCccccEEEeCCCCEEEEeeecccccCCEEEEEEEEEECC
Confidence            378999975 55567888889998889999999976532 1235689999999999999999999999999999999999


Q ss_pred             CCCcceeEEEEEEEEe
Q psy8618         136 FPSRQTVRLLRVEVLD  151 (232)
Q Consensus       136 ~~~~~~~~~v~i~v~d  151 (232)
                      .+++++.+.|.|+|.|
T Consensus        85 ~~~~~~~~~v~I~V~D  100 (100)
T d1l3wa1          85 GSPVEEPMEITINVID  100 (100)
T ss_dssp             SCBCSCCEEEEEEEEC
T ss_pred             CCcEEeEEEEEEEEeC
Confidence            9999999999999986

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=7.1e-17  Score=107.89  Aligned_cols=94  Identities=22%  Similarity=0.297  Sum_probs=81.1

Q ss_pred             EEEEecCCCCCcEEEEEEEEeCCCCCCcEEEEEEeeCC-CCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeCC
Q psy8618          57 VISVREEQPPGTEVVRARAVDKDDGSNATISYSILKGR-DTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNG  135 (232)
Q Consensus        57 ~~~v~E~~~~g~~v~~v~a~D~D~~~~~~v~y~i~~~~-~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~  135 (232)
                      .+.|+||.+ |.....+.+.|.|.+.++.++|+|.+.. ..+..++|.||+.+|.|+++++||||....|.|.|.|+|.+
T Consensus         8 ~v~V~EN~~-~~~~~~i~~~d~D~~~n~~v~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g   86 (102)
T d1ncia_           8 PINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN   86 (102)
T ss_dssp             CEEEETTCC-CCSSEEEEECCBGGGGTSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECTT
T ss_pred             CEEEeCCCC-CCEeEEEEEEeCCCCCCceEEEEEecCCCCCCcccceeccCCCCcEEEeeecchhcCcceEEEEEEEECC
Confidence            488999987 5556678888888888899999996432 12456789999999999999999999999999999999999


Q ss_pred             CCCcceeEEEEEEEEe
Q psy8618         136 FPSRQTVRLLRVEVLD  151 (232)
Q Consensus       136 ~~~~~~~~~v~i~v~d  151 (232)
                      .+++++.+.|.|+|.|
T Consensus        87 ~~~~~~~~~v~I~V~D  102 (102)
T d1ncia_          87 GNQVENPIDIVINVID  102 (102)
T ss_dssp             SCBSSCCEEEEEEEEC
T ss_pred             CCceeeeEEEEEEEeC
Confidence            9989999999999986

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.54  E-value=4.8e-15  Score=100.85  Aligned_cols=81  Identities=30%  Similarity=0.394  Sum_probs=66.3

Q ss_pred             cCCCCCeeeCCceEEEEEe-------------ecCCCC---CCeEEEEEEccCC---CCCCcEEEECCceEEEEe-ecCC
Q psy8618         152 LNDNRPTFTSSSLLFKVSA-------------SDPDCG---VNAMVNYTLGESP---SRTNHFYMKSVSGEICIS-QDLD  211 (232)
Q Consensus       152 ~Nd~~P~f~~~~~~~~v~~-------------~D~d~~---~~~~i~y~l~~~~---~~~~~f~i~~~~G~i~~~-~~ld  211 (232)
                      .|||+|+|....|.+.|.|             .|+|.+   .++.+.|+|..+.   .....|.|++.+|.|.+. +.||
T Consensus         1 eNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~LD   80 (113)
T d1l3wa2           1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLD   80 (113)
T ss_dssp             CSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCC
T ss_pred             CCCCCCccCCCeEEEEEECCCCCCCEEEEEEeecccccccccceEEEEEEecCCCCccccceeeeeecceeEEEeccccC
Confidence            4999999999998777665             777765   3567899997642   234789999999999985 5799


Q ss_pred             CccccEEEEEEEEEECCccCC
Q psy8618         212 FESRSSYEFPVVATDRGKETQ  232 (232)
Q Consensus       212 ~e~~~~y~l~V~a~D~g~~~q  232 (232)
                      ||....|.|.|.|+|.|.|++
T Consensus        81 ~E~~~~y~l~V~a~D~~~~~~  101 (113)
T d1l3wa2          81 REKFPEYTLTVQATDLEGAGL  101 (113)
T ss_dssp             TTTCCEEEEEEEEEHHHHTSC
T ss_pred             cccCCEEEEEEEEEECCCCCc
Confidence            999999999999999888753

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=9e-15  Score=99.31  Aligned_cols=80  Identities=35%  Similarity=0.453  Sum_probs=65.8

Q ss_pred             CCCCCeeeCCceEEEEEe-------------ecCCCCC---CeEEEEEEccC---CCCCCcEEEECCceEEEE-eecCCC
Q psy8618         153 NDNRPTFTSSSLLFKVSA-------------SDPDCGV---NAMVNYTLGES---PSRTNHFYMKSVSGEICI-SQDLDF  212 (232)
Q Consensus       153 Nd~~P~f~~~~~~~~v~~-------------~D~d~~~---~~~i~y~l~~~---~~~~~~f~i~~~~G~i~~-~~~ld~  212 (232)
                      |||+|.|....|.+.|.|             +|+|.+.   ++.++|+|..+   ......|.|++.+|.|.+ .+.|||
T Consensus         1 NDn~P~F~~~~y~~~V~E~~~~gt~v~~v~A~D~D~g~~~~n~~v~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~   80 (112)
T d1edha2           1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR   80 (112)
T ss_dssp             SCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTCSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCT
T ss_pred             CCCCCccCCCEEEEEEECCCCCCCEEEEEEEEecccCCccccceEEEEEecCCccccceeEEEEecccceEEEEeccccc
Confidence            899999999988777665             7888654   46789999764   233578999999999986 457999


Q ss_pred             ccccEEEEEEEEEECCccCC
Q psy8618         213 ESRSSYEFPVVATDRGKETQ  232 (232)
Q Consensus       213 e~~~~y~l~V~a~D~g~~~q  232 (232)
                      |....|.|.|.|+|+|.|++
T Consensus        81 E~~~~y~l~V~a~D~g~~~~  100 (112)
T d1edha2          81 ESYPTYTLVVQAADLQGEGL  100 (112)
T ss_dssp             TTCCEEEEEEEEETGGGTSC
T ss_pred             ccCcEEEEEEEEEECCCCcc
Confidence            99999999999999998864

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.53  E-value=1.6e-14  Score=97.28  Aligned_cols=77  Identities=22%  Similarity=0.368  Sum_probs=65.8

Q ss_pred             CCCCeeeCCce-------------EEEEEeecCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCcc----cc
Q psy8618         154 DNRPTFTSSSL-------------LFKVSASDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFES----RS  216 (232)
Q Consensus       154 d~~P~f~~~~~-------------~~~v~~~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~----~~  216 (232)
                      ||+|.|.+..|             .+++.+.|+|.+.++.++|+|..  +..++|.|++.+|.|.+.+.||||.    ..
T Consensus         1 Dn~P~F~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~--~~~~~F~id~~tG~i~~~~~lD~E~~~~~~~   78 (107)
T d1l3wa4           1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN--DPARWLTVNKDNGIVTGNGNLDRESEYVKNN   78 (107)
T ss_dssp             CCCCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECC--CSSCCCEEETTTTEEEECSCCCTTSSSCCSS
T ss_pred             CcCCCcCCCeEEEEEECCCCCCCEEEEeEEecCCcCcCCceeEEecC--CCcccceeccccceEEEccccChhhccccCC
Confidence            57888877665             55677799999999999999975  5678899999999999999999995    36


Q ss_pred             EEEEEEEEEECCccCC
Q psy8618         217 SYEFPVVATDRGKETQ  232 (232)
Q Consensus       217 ~y~l~V~a~D~g~~~q  232 (232)
                      .|.|.|.|+|+|.|+.
T Consensus        79 ~y~l~v~a~D~g~p~~   94 (107)
T d1l3wa4          79 TYTVIMLVTDDGVSVG   94 (107)
T ss_dssp             CCEEEEEEEECSSSCC
T ss_pred             eEEEEEEEEECCcCCc
Confidence            7999999999999863

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.6e-14  Score=98.33  Aligned_cols=78  Identities=29%  Similarity=0.434  Sum_probs=62.5

Q ss_pred             CCCCCeeeCCceEEEEEe-------------ecCCC--CCCeEEEEEEccC---CCCCCcEEEECCceEE-EEeecCCCc
Q psy8618         153 NDNRPTFTSSSLLFKVSA-------------SDPDC--GVNAMVNYTLGES---PSRTNHFYMKSVSGEI-CISQDLDFE  213 (232)
Q Consensus       153 Nd~~P~f~~~~~~~~v~~-------------~D~d~--~~~~~i~y~l~~~---~~~~~~f~i~~~~G~i-~~~~~ld~e  213 (232)
                      |||+|+|.+..|.+.|.|             +|+|.  +.++.++|+|..+   ......|.|++.+|.+ .+.+.||||
T Consensus         1 NDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~E   80 (114)
T d1ncja2           1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDRE   80 (114)
T ss_dssp             CCSCCCCSCSEEEEEECSSCCTTCEEEECCC-CCSCTTSTTTCCEEEEEEEESCCSCSCCEEECSSSCEEEECSSCCCTT
T ss_pred             CCCCCCcCCCeEEEEEeCCCCCCCEEEEEEEEECCCCccccceeEEEeccCCcCCCccceEEecCccceEEEeccccccc
Confidence            899999999888776665             77775  4467889999764   2445789999999975 567789999


Q ss_pred             cccEEEEEEEEEECCcc
Q psy8618         214 SRSSYEFPVVATDRGKE  230 (232)
Q Consensus       214 ~~~~y~l~V~a~D~g~~  230 (232)
                      ....|.|.|+|+|.|.+
T Consensus        81 ~~~~y~l~V~A~D~~~~   97 (114)
T d1ncja2          81 KVQQYTLIIQATDMEGN   97 (114)
T ss_dssp             TCSEEEEEEEEESGGGC
T ss_pred             cCCEEEEEEEEEECCCC
Confidence            99999999999996644

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.28  E-value=2.9e-13  Score=90.90  Aligned_cols=78  Identities=18%  Similarity=0.227  Sum_probs=61.6

Q ss_pred             CCCCCeeeCCceEE--------EEEeecCCCCCCe-EEEEEEccCCCCCCcEEEE-CCceEEEEeecCCCccccEEEEEE
Q psy8618         153 NDNRPTFTSSSLLF--------KVSASDPDCGVNA-MVNYTLGESPSRTNHFYMK-SVSGEICISQDLDFESRSSYEFPV  222 (232)
Q Consensus       153 Nd~~P~f~~~~~~~--------~v~~~D~d~~~~~-~i~y~l~~~~~~~~~f~i~-~~~G~i~~~~~ld~e~~~~y~l~V  222 (232)
                      |||+|.|.+..|.+        .|.++|+|.+.++ .++|+|.++  ....|.+. ...|.+...+.||+|....|.|.|
T Consensus         1 NDNaP~f~~~~~~v~e~~~~~~~v~AtD~D~~~n~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~ld~e~~~~y~l~V   78 (107)
T d1l3wa5           1 NDNGPVPSPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHG--SDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYV   78 (107)
T ss_dssp             CCSCCCBSCCCEEECSSSCCCEEEEBCCSSCTTTTCCCCCBCCSC--SSSSCBCCBCTTSSEEEEBCSSCCCSSCBCCEE
T ss_pred             CCCCCccCCCEEEEEecCCCceeEEEEcCccCccceeEeeeeecc--cccccccccccceeeeeeeccccccceeEEEEE
Confidence            89999998776643        5788999998855 689999875  34445553 456666677899999999999999


Q ss_pred             EEEECCccCC
Q psy8618         223 VATDRGKETQ  232 (232)
Q Consensus       223 ~a~D~g~~~q  232 (232)
                      .|+|+|.|++
T Consensus        79 ~a~D~G~p~~   88 (107)
T d1l3wa5          79 LLSDAQNNPQ   88 (107)
T ss_dssp             ECCSSSCCCE
T ss_pred             EEEeCCCCce
Confidence            9999999975

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.27  E-value=8.4e-12  Score=84.27  Aligned_cols=78  Identities=23%  Similarity=0.337  Sum_probs=57.7

Q ss_pred             cCCCCCeeeCCceEEEEEe------------ecCCCCCC--eEEEEEEccCCCCCCcEEEE----CCceEEEEeecCCCc
Q psy8618         152 LNDNRPTFTSSSLLFKVSA------------SDPDCGVN--AMVNYTLGESPSRTNHFYMK----SVSGEICISQDLDFE  213 (232)
Q Consensus       152 ~Nd~~P~f~~~~~~~~v~~------------~D~d~~~~--~~i~y~l~~~~~~~~~f~i~----~~~G~i~~~~~ld~e  213 (232)
                      .|||+|+|....|.++|.|            .|+|.+.+  ..+.|.+. + .....|.|.    ..+|.|.+.+.||||
T Consensus         1 aNDn~P~F~~~~y~~~v~En~~g~~v~~v~A~D~D~~~~~~~~~~~~~~-~-~~~~~f~i~~~~~~~~g~i~~~~~lD~E   78 (113)
T d1l3wa3           1 ANDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIR-V-NEGGFFNITTDPESNQGILTTAKGLDFE   78 (113)
T ss_dssp             CCCCCCCBSCSEEEEEEESSSCCCEEEEECBCCCSCTTSTTSCEECCBS-C-CTTSCEEEEECTTTCCEEEEESSCCCCS
T ss_pred             CCCCCCEeCCCeEEEEEECCCCCCEEEEEEEEccccCCcceeEEEEeec-c-ccccceEEEeecCCCceEEEeeeecccc
Confidence            3899999999999888887            33333221  12233332 2 667889885    468999999999999


Q ss_pred             cccEEEEEEEEEEC---CccC
Q psy8618         214 SRSSYEFPVVATDR---GKET  231 (232)
Q Consensus       214 ~~~~y~l~V~a~D~---g~~~  231 (232)
                      ....|.|.|.|+|+   |.|+
T Consensus        79 ~~~~y~l~V~a~D~~~~~~~~   99 (113)
T d1l3wa3          79 LRKQYVLQITVENAEPFSVPL   99 (113)
T ss_dssp             SCCCEEEEECCEESSCCSSCC
T ss_pred             cCCEEEEEEEEEECCCCCCCc
Confidence            99999999999997   5554

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.21  E-value=1.6e-11  Score=81.04  Aligned_cols=67  Identities=13%  Similarity=0.147  Sum_probs=56.8

Q ss_pred             EEEEeecCCCCCCeEEEEEEccCC---CCCCcEEEECCceEEEEeecCCCccccEEEEEEEEEECCccCC
Q psy8618         166 FKVSASDPDCGVNAMVNYTLGESP---SRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGKETQ  232 (232)
Q Consensus       166 ~~v~~~D~d~~~~~~i~y~l~~~~---~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a~D~g~~~q  232 (232)
                      ..+.+.|.|.+.++.++|+|.++.   .....|.|++.+|.|++.++||||....|.|.|.|+|.|.|++
T Consensus        19 ~~v~~~~~D~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~I~~~~~lDrE~~~~y~l~V~a~D~g~~~~   88 (100)
T d1l3wa1          19 KRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPV   88 (100)
T ss_dssp             EEEEECCCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESSSCBC
T ss_pred             EEEEEEECCCCCCCcEEEEEEeCCCCCCccccEEEeCCCCEEEEeeecccccCCEEEEEEEEEECCCCcE
Confidence            455556668888999999998642   2245799999999999999999999999999999999998864

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.8e-11  Score=85.48  Aligned_cols=73  Identities=14%  Similarity=0.258  Sum_probs=59.4

Q ss_pred             ecCCCCCeeeCCceEEEEEe-------------ecCCCCCCeEEEEEEccCCCCCCcEEEECCceEEEEeecCCCccccE
Q psy8618         151 DLNDNRPTFTSSSLLFKVSA-------------SDPDCGVNAMVNYTLGESPSRTNHFYMKSVSGEICISQDLDFESRSS  217 (232)
Q Consensus       151 d~Nd~~P~f~~~~~~~~v~~-------------~D~d~~~~~~i~y~l~~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~  217 (232)
                      |+|++.|.|.+..|.+.|+|             +|.|  .+..+.|++..    ...|.|++ +|.|.+.++||+|.. .
T Consensus         5 ~~~~c~P~F~~~~Y~~~V~E~~~~Gt~v~~V~a~D~d--~~~~~~y~~~~----~~~F~i~~-~G~I~~~~~ld~e~~-~   76 (136)
T d1op4a_           5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCN--RKRKVQYESSE----PADFKVDE-DGTVYAVRSFPLTAE-Q   76 (136)
T ss_dssp             CCCCCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCS--SCCCEEEECCC----SSEEEEET-TTEEEEESCCSCSSS-C
T ss_pred             CCCCccceecCCeEEEEEECCCCCCCEEEEeEeecCC--ccccceecccc----ceeeeccc-cEEEEEecccCcccc-e
Confidence            68999999999999877666             4444  34556888743    46799996 699999999999975 6


Q ss_pred             EEEEEEEEECCccC
Q psy8618         218 YEFPVVATDRGKET  231 (232)
Q Consensus       218 y~l~V~a~D~g~~~  231 (232)
                      |.|.|.|+|+|.|.
T Consensus        77 y~l~V~A~D~g~~~   90 (136)
T d1op4a_          77 AKFLIYAQDKETQE   90 (136)
T ss_dssp             EEEEEEEEETTTTE
T ss_pred             EEEEEEEEecCCcc
Confidence            99999999999875

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=2.2e-11  Score=80.63  Aligned_cols=67  Identities=16%  Similarity=0.259  Sum_probs=55.8

Q ss_pred             EEEEeecCCCCCCeEEEEEEccC---CCCCCcEEEECCceEEEEeecCCCccccEEEEEEEEEECCccCC
Q psy8618         166 FKVSASDPDCGVNAMVNYTLGES---PSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRGKETQ  232 (232)
Q Consensus       166 ~~v~~~D~d~~~~~~i~y~l~~~---~~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a~D~g~~~q  232 (232)
                      ..+.+.|.|.+.++.+.|+|.+.   .+..+.|.|++.+|.|+++++||||....|.|.|.|+|.|.|++
T Consensus        21 ~~i~~~d~D~~~n~~v~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~~~~   90 (102)
T d1ncia_          21 QELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQV   90 (102)
T ss_dssp             EEEEECCBGGGGTSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECTTSCBS
T ss_pred             EEEEEEeCCCCCCceEEEEEecCCCCCCcccceeccCCCCcEEEeeecchhcCcceEEEEEEEECCCCce
Confidence            34455566888889999999753   23456899999999999999999999999999999999988753

>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Dystroglycan, N-terminal domain
domain: Dystroglycan, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.18  E-value=0.54  Score=29.32  Aligned_cols=49  Identities=16%  Similarity=0.154  Sum_probs=35.3

Q ss_pred             EEEEEeeCCCCCCcccEEEeCCceEEEECccCCccCCCEEEEEEEEEeCCC
Q psy8618          86 ISYSILKGRDTDGYGVFTIDPISGVIRTKSVLDHEDRSIYRIAVAATDNGF  136 (232)
Q Consensus        86 v~y~i~~~~~~~~~~~f~id~~tG~i~~~~~ld~e~~~~~~l~v~a~d~~~  136 (232)
                      ++|++..........|..+|+.+|.+.-.-.  .+..+.|.+.|+|+|.+.
T Consensus        33 ~t~~~~~~~g~~LPsWl~fd~~tg~~~GtP~--~~~~G~~~i~vtAtD~~~   81 (103)
T d1u2ca1          33 EIIKVSAAGKEALPSWLHWDPHSHILEGLPL--DTDKGVHYISVSAARLGA   81 (103)
T ss_dssp             EEEEEEETTSSSCCTTEEEETTTTEEEECCC--GGGCEEEEEEEEEEEECT
T ss_pred             cEEEEEecCCCCCCccEEEeccCCEEEEccC--CCCceEEEEEEEEEeCCC
Confidence            5677643322245689999999999887332  445688999999999654

>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Dystroglycan, N-terminal domain
domain: Dystroglycan, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.53  E-value=0.3  Score=30.56  Aligned_cols=62  Identities=8%  Similarity=-0.095  Sum_probs=42.5

Q ss_pred             CceEEEEEeecCCCCCCeEEEEEEc--cCCCCCCcEEEECCceEEEEeecCCCccccEEEEEEEEEECC
Q psy8618         162 SSLLFKVSASDPDCGVNAMVNYTLG--ESPSRTNHFYMKSVSGEICISQDLDFESRSSYEFPVVATDRG  228 (232)
Q Consensus       162 ~~~~~~v~~~D~d~~~~~~i~y~l~--~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~y~l~V~a~D~g  228 (232)
                      ..|.++|.+.+.+   +..++|++.  .+..-..+..+++.+|.+.-..  ..+..+.|.+.|+|+|.+
T Consensus        17 ~~f~~~ip~~~f~---~d~~t~~~~~~~g~~LPsWl~fd~~tg~~~GtP--~~~~~G~~~i~vtAtD~~   80 (103)
T d1u2ca1          17 RSFRVSIPTDLIA---SSGEIIKVSAAGKEALPSWLHWDPHSHILEGLP--LDTDKGVHYISVSAARLG   80 (103)
T ss_dssp             SCEEEECCHHHHC---CTTEEEEEEETTSSSCCTTEEEETTTTEEEECC--CGGGCEEEEEEEEEEEEC
T ss_pred             ceEEEeCCCCCcC---CCccEEEEEecCCCCCCccEEEeccCCEEEEcc--CCCCceEEEEEEEEEeCC
Confidence            4577788774443   223455554  4435568999999999998754  234467899999999965