Psyllid ID: psy8663

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MEQSVLQPLDDVQHDEVPEVLDDGISVVPGRFERVPLDDVQHDEVPEVLDDGISVVPGPMPVAAPHGFQDYTSWFQELISGFVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccEEccccccccccccEEEEccccEEEEEEEEEcccEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccEEEcccccccHHHcHHHHcccccccccccccccccccccHHHHHccccccccEcccccccccccccccHHHcccccccccccccccEccEEccccccccEEEEEccccEEEEEEEEEccEEEEcHHHccc
Coil and Loop (DISEMBL)
meqsvlqplddvqhdevpevlddgisvvpgrfervplddvqhdevpevlddgisvvpgpmpvaaphgfqdYTSWFQELISGFvtnqeestppepvkpvdlekcgpctcgavnkktrivggqvtyvhQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ
Flexible Loop (DISEMBL)
meqsvlqplddvqhdevpeVLDDGISVVPGRFERVPLDDVQHDEVPEVLDDGISVVPGPMPVAAPHGFQDYTSWFQELISGFVtnqeestppepvkpvdlekcGPCTCGavnkktrivgGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ
Low Complexity Region (SEG)
MEQSVLQPLDDVQHDEVPEVLDDGISVVPGRFERVPLDDVQHDEVPEVLDDGISVVPGPMPVAAPHGFQDYTSWFQELISGFVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ
Disordered region (IsUnstruct)
*******************VLDDGISVVPGRFERVPLDDVQHDEVPEVLDDGISVVPGPMPVAAPHGFQDYTSWFQELISGFVT*************VDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV**
Disordered Region (DISOPRED)
******Q**DDVQHDEVPEVLDDGISVVPGRFERVPLDDVQHDEVPEVLDDGISVVP**************TSWFQ****************************PCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ
Disordered Region (DISEMBL)
MEQSVLQPLDDVQHDEVPEVLDDGISVVPGRFERVPLDDVQHDEVPEVLDDGISVVPGPMPVAAPHGFQDYTSWFQELISGFVTN**********KPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ
Disordered Region (DISPRO)
*****LQPLDDVQHDEVPEVLDDGISVVPGRFERVPLDDVQHDEVPEVLDDGIS******PVAAPHGFQDYTSWFQELISGFVTNQE*STPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQSVLQPLDDVQHDEVPEVLDDGISVVPGRFERVPLDDVQHDEVPEVLDDGISVVPGPMPVAAPHGFQDYTSWFQELISGFVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
P13582	392	Serine protease easter OS	no	N/A	0.472	0.193	0.378	5e-08
O70169	367	Inactive serine protease	yes	N/A	0.335	0.147	0.388	6e-08
Q9DBI0	811	Transmembrane protease se	no	N/A	0.347	0.069	0.428	8e-08
Q8IU80	811	Transmembrane protease se	yes	N/A	0.347	0.069	0.428	1e-07
P23604	213	Achelase-1 OS=Lonomia ach	N/A	N/A	0.260	0.197	0.595	1e-07
P69526	1061	Transmembrane protease se	no	N/A	0.422	0.064	0.397	2e-07
Q63207	482	Coagulation factor X OS=R	no	N/A	0.285	0.095	0.5	2e-07
Q14C59	416	Transmembrane protease se	no	N/A	0.521	0.201	0.315	3e-07
Q9ER04	455	Transmembrane protease se	no	N/A	0.465	0.164	0.381	4e-07
P06868	812	Plasminogen OS=Bos taurus	no	N/A	0.273	0.054	0.522	5e-07

>sp|P13582|EAST_DROME Serine protease easter OS=Drosophila melanogaster GN=ea PE=1 SV=3

 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 6/82 (7%)

Query: 84  TNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMY-----KK 138
           ++ E + PP+P    +     P  CG +    RI GG  T + ++PWMAL+ Y     KK
Sbjct: 96  SSSETTPPPKPNVTSNSLLPLPGQCGNI-LSNRIYGGMKTKIDEFPWMALIEYTKSQGKK 154

Query: 139 RFYCGATLINNLYVLTAAHCVH 160
             +CG +LI+  YV+TA+HCV+
Sbjct: 155 GHHCGGSLISTRYVITASHCVN 176

Component of the extracellular signaling pathway that establishes the dorsal-ventral pathway of the embryo. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|O70169|PRS39_MOUSE Inactive serine protease 39 OS=Mus musculus GN=Prss39 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%)

Query: 108 CGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           CG    + +I GGQ+    ++PW A L+++ R  CGA LI+  ++L+AAHC  +
Sbjct: 59  CGKTKFQGKIYGGQIAKAERWPWQASLIFRGRHICGAVLIDKTWLLSAAHCFQR 112

May play an important role in the sperm/egg interaction; released during the acrosome reaction.

Mus musculus (taxid: 10090)

>sp|Q9DBI0|TMPS6_MOUSE Transmembrane protease serine 6 OS=Mus musculus GN=Tmprss6 PE=1 SV=4

 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%)

Query: 106 CTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           C CG     +RIVGG V+   ++PW A L  + R  CG  LI + +V+TAAHC  +
Sbjct: 566 CDCGLQGLSSRIVGGTVSSEGEWPWQASLQIRGRHICGGALIADRWVITAAHCFQE 621

Serine protease which hydrolyzes a range of proteins including type I collagen, fibronectin and fibrinogen. Can also activate urokinase-type plasminogen activator with low efficiency (By similarity). May play a specialized role in matrix remodeling processes in liver. Required to sense iron deficiency. Overexpression suppresses activation of the HAMP promoter.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8IU80|TMPS6_HUMAN Transmembrane protease serine 6 OS=Homo sapiens GN=TMPRSS6 PE=1 SV=3

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%)

Query: 106 CTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           C CG     +RIVGG V+   ++PW A L  + R  CG  LI + +V+TAAHC  +
Sbjct: 566 CDCGLQGPSSRIVGGAVSSEGEWPWQASLQVRGRHICGGALIADRWVITAAHCFQE 621

Serine protease which hydrolyzes a range of proteins including type I collagen, fibronectin and fibrinogen. Can also activate urokinase-type plasminogen activator with low efficiency. May play a specialized role in matrix remodeling processes in liver. Required to sense iron deficiency. Overexpression suppresses activation of the HAMP promoter.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P23604|ACH1_LONAC Achelase-1 OS=Lonomia achelous PE=1 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 29/42 (69%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           IVGG VT + QYP MA L++  R  CG  +INN  VLTAAHC
Sbjct: 1   IVGGSVTTIGQYPSMASLLFNNRQVCGGVIINNRSVLTAAHC 42

Fibrinolytic activity. Contact with the caterpillars causes severe bleeding, due the anticoagulant effect of the protein.

Lonomia achelous (taxid: 7125)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P69526|TMPS9_RAT Transmembrane protease serine 9 OS=Rattus norvegicus GN=Tmprss9 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 92  PEPVKPVDLEKCGPCTCGA---VNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLIN 148
           P P+ P    K  P  CGA   ++K TRIVGG      + PW A L    R +CGAT++ 
Sbjct: 480 PAPLHPSTAAK--PQECGARPAMDKPTRIVGGISAVSGEVPWQASLKEGSRHFCGATVVG 537

Query: 149 NLYVLTAAHCVHQ 161
           + ++L+AAHC + 
Sbjct: 538 DRWLLSAAHCFNH 550

Serase-1 and serase-2 are serine proteases that hydrolyze the peptides N-t-Boc-Gln-Ala-Arg-AMC and N-t-Boc-Gln-Gly-Arg-AMC. In contrast, N-t-Boc-Ala-Phe-Lys-AMC and N-t-Boc-Ala-Pro-Ala-AMC are not significantly hydrolyzed.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q63207|FA10_RAT Coagulation factor X OS=Rattus norvegicus GN=F10 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 116 RIVGGQVTYVHQYPWMALLMYKKRF--YCGATLINNLYVLTAAHCVHQ 161
           RIVGGQ     + PW ALL   +    +CG T++N  Y+LTAAHC+HQ
Sbjct: 231 RIVGGQECKRGECPWQALLFSDEETDGFCGGTILNEFYILTAAHCLHQ 278

Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 6

>sp|Q14C59|TM11L_MOUSE Transmembrane protease serine 11B-like protein OS=Mus musculus GN=Tmprss11bnl PE=2 SV=2

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)

Query: 75  FQELISGFVTNQEESTPPEP-------VKPVDLEKCGPCTCGAVNKKT----RIVGGQVT 123
            + ++   + N  ES   +P       +  VD EK     CG   + +    RI GG   
Sbjct: 132 IESILRQMLENNPESLTTDPGSLKLTEISKVDAEKIINNRCGRRPRMSATYDRITGGSTA 191

Query: 124 YVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           +  ++PW A L    + YCGA+LI   ++LTAAHC
Sbjct: 192 HKGEWPWQASLRVNGKHYCGASLIGERFLLTAAHC 226

Probable serine protease.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9ER04|TMPS5_MOUSE Transmembrane protease serine 5 OS=Mus musculus GN=Tmprss5 PE=2 SV=3

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 87  EESTPPEPVKPVDLEKCGPCT-CGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGAT 145
           EES  P    P        C+ CGA    +RIVGGQ     ++PW A +M   R  CGA+
Sbjct: 187 EESWKPSANCPSGRIVSLKCSECGARPLASRIVGGQAVASGRWPWQASVMLGSRHTCGAS 246

Query: 146 LINNLYVLTAAHCVHQ 161
           ++   +V+TAAHC++ 
Sbjct: 247 VLAPHWVVTAAHCMYS 262

May play a role in hearing.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P06868|PLMN_BOVIN Plasminogen OS=Bos taurus GN=PLG PE=1 SV=2

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 116 RIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           RIVGG V+  H +PW   L    R +CG TLI+  +VLTAAHC+
Sbjct: 583 RIVGGCVSKPHSWPWQVSLRRSSRHFCGGTLISPKWVLTAAHCL 626

Plasmin dissolves the fibrin of blood clots and acts as a proteolytic factor in a variety of other processes including embryonic development, tissue remodeling, tumor invasion, and inflammation. In ovulation, weakens the walls of the Graafian follicle. It activates the urokinase-type plasminogen activator, collagenases and several complement zymogens, such as C1 and C5. Cleavage of fibronectin and laminin leads to cell detachment and apoptosis. Also cleaves fibrin, thrombospondin and von Willebrand factor. Its role in tissue remodeling and tumor invasion may be modulated by CSPG4. Binds to cells.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
193610620	338	PREDICTED: serine proteinase stubble-lik	0.621	0.295	0.567	6e-28
242019712	420	tripsin, putative [Pediculus humanus cor	0.515	0.197	0.588	2e-23
289329329	340	serine protease 37 precursor [Nasonia vi	0.590	0.279	0.485	2e-19
383858726	338	PREDICTED: proclotting enzyme-like [Mega	0.546	0.260	0.505	1e-18
195025144	356	GH20777 [Drosophila grimshawi] gi|193902	0.372	0.168	0.65	3e-18
322797981	325	hypothetical protein SINV_00030 [Solenop	0.509	0.252	0.523	4e-18
307208934	329	Trypsin-1 [Harpegnathos saltator]	0.453	0.221	0.552	6e-18
350401867	332	PREDICTED: clotting factor B-like [Bombu	0.571	0.277	0.473	3e-17
340718318	332	PREDICTED: clotting factor B-like [Bombu	0.571	0.277	0.473	4e-17
307180767	334	Trypsin-1 [Camponotus floridanus]	0.440	0.212	0.551	4e-17

>gi|193610620|ref|XP_001943273.1| PREDICTED: serine proteinase stubble-like [Acyrthosiphon pisum]

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/104 (56%), Positives = 74/104 (71%), Gaps = 4/104 (3%)

Query: 57  PGPMPVAAPHGFQDYTSWFQELISGFVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTR 116
           PG +  +A   F DY +W+Q +I G + + EE     PV P+D   C PCTCGA+ KK R
Sbjct: 34  PGDLSQSA---FADYVNWWQNII-GIINHTEEPAAEPPVTPIDQSTCTPCTCGALGKKNR 89

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG  TY+HQYPWMA+L YK +FYCGAT+IN+ YV+TAAHCVH
Sbjct: 90  IVGGAPTYMHQYPWMAMLTYKGKFYCGATVINHKYVMTAAHCVH 133

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019712|ref|XP_002430303.1| tripsin, putative [Pediculus humanus corporis] gi|212515418|gb|EEB17565.1| tripsin, putative [Pediculus humanus corporis]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 63/85 (74%), Gaps = 2/85 (2%)

Query: 75  FQELISGFVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALL 134
           F E + G  + +EE +     KPVDL +C PC+CG  NKK RIVGG+ T V+QYPWMALL
Sbjct: 57  FLEWLFGLTSEKEEESTTS--KPVDLAQCKPCSCGITNKKIRIVGGKPTQVNQYPWMALL 114

Query: 135 MYKKRFYCGATLINNLYVLTAAHCV 159
           MY ++FYCG +LIN+ Y+LTAAHCV
Sbjct: 115 MYNRKFYCGGSLINSRYILTAAHCV 139

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289329329|ref|NP_001166078.1| serine protease 37 precursor [Nasonia vitripennis]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 67/103 (65%), Gaps = 8/103 (7%)

Query: 62  VAAPHGFQDYTSWFQELISGF---VTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIV 118
             AP   + + +W Q ++ G+   +T    + PP     V+ EKC  C CG  NK+TRIV
Sbjct: 42  TTAPEEDKFFLNWLQNVL-GYNPPITITSTTQPP----TVEAEKCAACYCGVTNKQTRIV 96

Query: 119 GGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           GG  T V++YPW+ALL YK RFYCGA++IN+ YVLTAAHCV +
Sbjct: 97  GGHETMVNEYPWVALLTYKGRFYCGASVINSKYVLTAAHCVDR 139

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858726|ref|XP_003704850.1| PREDICTED: proclotting enzyme-like [Megachile rotundata]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 60/93 (64%), Gaps = 5/93 (5%)

Query: 69  QDYTSWFQELISGFVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQY 128
           +++  W   ++SG       S PP    P   E C PC CG  N + RIVGG  T V+QY
Sbjct: 58  KNFWDWLNGVLSGL--RPTTSAPPIAEAP---ESCPPCRCGITNTQRRIVGGVETQVNQY 112

Query: 129 PWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           PWMAL+M+K RFYCGA++IN+ YVLTAAHCV +
Sbjct: 113 PWMALMMFKGRFYCGASVINSRYVLTAAHCVDR 145

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195025144|ref|XP_001986008.1| GH20777 [Drosophila grimshawi] gi|193902008|gb|EDW00875.1| GH20777 [Drosophila grimshawi]

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 48/60 (80%)

Query: 101 EKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
            KC  CTCG +N + RIVGGQ T VH+YPWMA+LM+  RFYCGA+L+N+ Y LTAAHCV+
Sbjct: 60  RKCSACTCGNINSRHRIVGGQETEVHEYPWMAMLMWFGRFYCGASLVNDQYALTAAHCVN 119

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797981|gb|EFZ19825.1| hypothetical protein SINV_00030 [Solenopsis invicta]

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 57/86 (66%), Gaps = 4/86 (4%)

Query: 75  FQELISGFVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALL 134
           F E + G +T      PP  ++    EKC  CTCG  NK  RIVGG  T ++QYPWM LL
Sbjct: 86  FWEWLFGSITPH----PPTIIESQQPEKCLKCTCGVTNKYNRIVGGVETLINQYPWMVLL 141

Query: 135 MYKKRFYCGATLINNLYVLTAAHCVH 160
           MY+ +FYCG T+IN+ YVLTAAHC++
Sbjct: 142 MYRGQFYCGGTVINSRYVLTAAHCIY 167

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208934|gb|EFN86145.1| Trypsin-1 [Harpegnathos saltator]

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 3/76 (3%)

Query: 89  STPP---EPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGAT 145
           S PP   EP +P+D   C  C CG V+K+ RIVGG  T V+QY WMA+L Y K+FYCGA+
Sbjct: 60  SKPPMITEPPQPIDQATCPKCACGLVSKQNRIVGGVETEVNQYSWMAMLTYNKQFYCGAS 119

Query: 146 LINNLYVLTAAHCVHQ 161
           +IN+LY +TAAHC+++
Sbjct: 120 IINSLYAITAAHCINR 135

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401867|ref|XP_003486287.1| PREDICTED: clotting factor B-like [Bombus impatiens]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 69  QDYTSWFQELISGFVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQY 128
           +++  W   LIS   +     T  E  +P   E C PC CG  N + RIVGG  T V+QY
Sbjct: 48  KNFWEWLSSLISAGGSITVPVTTTELPRPAT-ESCLPCKCGLTNTQKRIVGGVETQVNQY 106

Query: 129 PWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           PWMAL+M++ RFYCG ++I++ YVLTAAHCV +
Sbjct: 107 PWMALMMFRGRFYCGGSVISSRYVLTAAHCVDR 139

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718318|ref|XP_003397616.1| PREDICTED: clotting factor B-like [Bombus terrestris]

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 69  QDYTSWFQELISGFVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQY 128
           +++  W   LIS   +     T  E  +P   E C PC CG  N + RIVGG  T V+QY
Sbjct: 48  KNFWEWLASLISAGGSITVPVTTTELPRPAT-ESCLPCKCGLTNTQKRIVGGVETQVNQY 106

Query: 129 PWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           PWMAL+M++ RFYCG ++I++ YVLTAAHCV +
Sbjct: 107 PWMALMMFRGRFYCGGSVISSRYVLTAAHCVDR 139

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180767|gb|EFN68636.1| Trypsin-1 [Camponotus floridanus]

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 51/78 (65%), Gaps = 7/78 (8%)

Query: 91  PPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMY-------KKRFYCG 143
           PP   +P   EKC  CTCG  NK  RIVGG  T V +YPW+ALLMY         +FYCG
Sbjct: 61  PPTVTEPSQAEKCTTCTCGLTNKHNRIVGGNETLVIEYPWVALLMYLSTNYLRTAKFYCG 120

Query: 144 ATLINNLYVLTAAHCVHQ 161
            T+IN+ YVLTAAHC+H+
Sbjct: 121 GTVINSRYVLTAAHCIHK 138

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
FB|FBgn0034661	372	CG4386 [Drosophila melanogaste	0.490	0.212	0.487	1.3e-17
FB|FBgn0042098	364	CG18735 [Drosophila melanogast	0.428	0.189	0.557	1.5e-17
FB|FBgn0034666	352	CG9294 [Drosophila melanogaste	0.472	0.215	0.519	4.9e-17
FB|FBgn0036436	374	CG4914 [Drosophila melanogaste	0.335	0.144	0.666	4.1e-15
FB|FBgn0039272	325	CG11836 [Drosophila melanogast	0.366	0.181	0.533	2.5e-13
FB|FBgn0031619	314	CG3355 [Drosophila melanogaste	0.645	0.331	0.365	5.2e-11
FB|FBgn0036427	411	CG4613 [Drosophila melanogaste	0.484	0.189	0.437	2.1e-10
ZFIN|ZDB-GENE-070912-70	543	tmprss3a "transmembrane protea	0.354	0.104	0.4	1.7e-09
FB|FBgn0000533	392	ea "easter" [Drosophila melano	0.465	0.191	0.397	3.9e-09
MGI|MGI:1919003	811	Tmprss6 "transmembrane serine	0.347	0.069	0.428	5.9e-09

FB|FBgn0034661 CG4386 [Drosophila melanogaster (taxid:7227)]

 Score = 218 (81.8 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 40/82 (48%), Positives = 54/82 (65%)

Query:    80 SGFVTNQEESTPPEP-VKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK 138
             S   T +  +TP  P + P     C  C CG  N + RIVGGQ T VHQYPW+A+L+Y  
Sbjct:    91 SSTTTTRRATTPAPPTLNPP--RNCSDCVCGIANIQKRIVGGQETEVHQYPWVAMLLYGG 148

Query:   139 RFYCGATLINNLYVLTAAHCVH 160
             RFYC A+L+N+ ++LTA+HCV+
Sbjct:   149 RFYCAASLLNDQFLLTASHCVY 170

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

FB|FBgn0042098 CG18735 [Drosophila melanogaster (taxid:7227)]

 Score = 217 (81.4 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 39/70 (55%), Positives = 49/70 (70%)

Query:    91 PPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNL 150
             P E   P   E C  C+CG +N + RIVGGQ T VH+YPWM +LM+   FYCGA+L+N+ 
Sbjct:    58 PAEWSSPAKRE-CAECSCGNINTRHRIVGGQETEVHEYPWMIMLMWFGNFYCGASLVNDQ 116

Query:   151 YVLTAAHCVH 160
             Y LTAAHCV+
Sbjct:   117 YALTAAHCVN 126

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

FB|FBgn0034666 CG9294 [Drosophila melanogaster (taxid:7227)]

 Score = 212 (79.7 bits), Expect = 4.9e-17, P = 4.9e-17
 Identities = 40/77 (51%), Positives = 50/77 (64%)

Query:    84 TNQEESTPPEPVKPVDLEK-CGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYC 142
             T    +T    V    +E+ C  C CG +N   +IVGGQ T VHQYPWMA+++   RFYC
Sbjct:    67 TTSRTTTSRTTVANFPIERDCVTCRCGLINTLYKIVGGQETRVHQYPWMAVILIYNRFYC 126

Query:   143 GATLINNLYVLTAAHCV 159
               +LIN+LYVLTAAHCV
Sbjct:   127 SGSLINDLYVLTAAHCV 143

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

FB|FBgn0036436 CG4914 [Drosophila melanogaster (taxid:7227)]

 Score = 196 (74.1 bits), Expect = 4.1e-15, P = 4.1e-15
 Identities = 36/54 (66%), Positives = 40/54 (74%)

Query:   106 CTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
             C CG  N ++RIVGG  T V +YPWMA L Y  RFYCG TLIN+ YVLTAAHCV
Sbjct:   117 CRCGERNDESRIVGGTTTGVSEYPWMARLSYFNRFYCGGTLINDRYVLTAAHCV 170

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

FB|FBgn0039272 CG11836 [Drosophila melanogaster (taxid:7227)]

 Score = 178 (67.7 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 32/60 (53%), Positives = 44/60 (73%)

Query:   100 LEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
             L+ C  C CG  N++ RIVGG+ T V+QYPWMA ++Y  +F+CG +L+   YVL+AAHCV
Sbjct:    73 LKNCD-CDCGFSNEEIRIVGGKPTGVNQYPWMARIVYDGKFHCGGSLLTKDYVLSAAHCV 131

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

FB|FBgn0031619 CG3355 [Drosophila melanogaster (taxid:7227)]

 Score = 157 (60.3 bits), Expect = 5.2e-11, P = 5.2e-11
 Identities = 42/115 (36%), Positives = 56/115 (48%)

Query:    52 GISVVPGPMPVAAPHGFQDYTSWFQELISGFVTNQEESTPPEPVKPVDLEKCGP---CTC 108
             GI +        APH  Q     F +++   V +  E +      P    +C     C C
Sbjct:    13 GIGLSLAQYQYQAPH--QTLAQQFADVVD--VVDPAEQSIKAVRPPKSRNQCTAKQNCFC 68

Query:   109 GAVNKKTRIVGGQVTYVHQYPWMALLM---YKKRFYCGATLINNLYVLTAAHCVH 160
             G  N   RIVGGQ    ++YPW A L+   +  R +CG +LIN+ YVLTAAHCVH
Sbjct:    69 GTPNVN-RIVGGQQVRSNKYPWTAQLVKGRHYPRLFCGGSLINDRYVLTAAHCVH 122

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

FB|FBgn0036427 CG4613 [Drosophila melanogaster (taxid:7227)]

 Score = 154 (59.3 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 35/80 (43%), Positives = 43/80 (53%)

Query:    82 FVTNQEESTPPEPVKPVDLEKCGPCT-CGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRF 140
             F  N+  S    P K        P T CG  N   RIVGG     ++YPW+A ++     
Sbjct:   139 FRVNRCASCKSLPPKTTSNPNFNPLTACGVPNVN-RIVGGTQVRTNKYPWIAQIIRGTFL 197

Query:   141 YCGATLINNLYVLTAAHCVH 160
             +CG TLIN+ YVLTAAHCVH
Sbjct:   198 FCGGTLINDRYVLTAAHCVH 217

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

ZFIN|ZDB-GENE-070912-70 tmprss3a "transmembrane protease, serine 3a" [Danio rerio (taxid:7955)]

 Score = 124 (48.7 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query:   102 KCGPCTCGAVNK-KTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
             KC    CG+  K   RIVGG ++   Q+PW   L ++    CG ++I + ++LTAAHCV+
Sbjct:   284 KC--IACGSRPKFSARIVGGNLSAEGQFPWQVSLHFQNEHLCGGSIITSRWILTAAHCVY 341

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

FB|FBgn0000533 ea "easter" [Drosophila melanogaster (taxid:7227)]

 Score = 142 (55.0 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 33/83 (39%), Positives = 48/83 (57%)

Query:    84 TNQEESTPPEP-VKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMY-----K 137
             ++ E + PP+P V    L    P  CG +    RI GG  T + ++PWMAL+ Y     K
Sbjct:    96 SSSETTPPPKPNVTSNSLLPL-PGQCGNI-LSNRIYGGMKTKIDEFPWMALIEYTKSQGK 153

Query:   138 KRFYCGATLINNLYVLTAAHCVH 160
             K  +CG +LI+  YV+TA+HCV+
Sbjct:   154 KGHHCGGSLISTRYVITASHCVN 176

GO:0007311 "maternal specification of dorsal/ventral axis, oocyte, germ-line encoded" evidence=TAS

GO:0009950 "dorsal/ventral axis specification" evidence=NAS;IMP;TAS

GO:0005576 "extracellular region" evidence=NAS;IDA

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;NAS;IDA

GO:0008063 "Toll signaling pathway" evidence=NAS;TAS

GO:0008236 "serine-type peptidase activity" evidence=NAS

GO:0006952 "defense response" evidence=NAS

GO:0008233 "peptidase activity" evidence=NAS;TAS

GO:0006508 "proteolysis" evidence=IEA;NAS;TAS

GO:0031638 "zymogen activation" evidence=IDA

MGI|MGI:1919003 Tmprss6 "transmembrane serine protease 6" [Mus musculus (taxid:10090)]

 Score = 131 (51.2 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
 Identities = 24/56 (42%), Positives = 33/56 (58%)

Query:   106 CTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
             C CG     +RIVGG V+   ++PW A L  + R  CG  LI + +V+TAAHC  +
Sbjct:   566 CDCGLQGLSSRIVGGTVSSEGEWPWQASLQIRGRHICGGALIADRWVITAAHCFQE 621

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006508 "proteolysis" evidence=ISO

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0042730 "fibrinolysis" evidence=ISO

GO:0055072 "iron ion homeostasis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	161
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	3e-17
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	4e-16
pfam00089	218	pfam00089, Trypsin, Trypsin	1e-11
COG5640	413	COG5640, COG5640, Secreted trypsin-like serine pro	4e-05
COG3591	251	COG3591, COG3591, V8-like Glu-specific endopeptida	0.002

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score = 75.0 bits (185), Expect = 3e-17
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 116 RIVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVH 160
           RIVGG    +  +PW   L Y   R +CG +LI+  +VLTAAHCV 
Sbjct: 1   RIVGGSEANIGSFPWQVSLQYGGGRHFCGGSLISPRWVLTAAHCVR 46

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score = 72.3 bits (178), Expect = 4e-16
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVH 160
           IVGG    +  +PW   L Y   R +CG +LI+  +VLTAAHCV+
Sbjct: 1   IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVY 45

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFY-CGATLINNLYVLTAAHCVH 160
           IVGG       +PW   L      + CG +LI+  +VLTAAHCV 
Sbjct: 1   IVGGDEAQPGSFPWQVSLQVSSGKHFCGGSLISENWVLTAAHCVS 45

Length = 218

>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 116 RIVGGQVTYVHQYPWMALLM-----YKKRFYCGATLINNLYVLTAAHCV 159
           RI+GG      +YP +  L+     Y    +CG + +   YVLTAAHC 
Sbjct: 32  RIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCA 80

Length = 413

>gnl|CDD|226119 COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 112 NKKTRIVGGQVTYVHQYPWMALLMYKK---RFYCGATLINNLYVLTAAHCVH 160
            +  R    QVT   Q+P+ A++ ++    R    ATLI    VLTA HC++
Sbjct: 36  AEDDRT---QVTDTTQFPYSAVVQFEAATGRLCTAATLIGPNTVLTAGHCIY 84

Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
KOG3627|consensus	256		98.98
COG5640	413	Secreted trypsin-like serine protease [Posttransla	98.46
PF03761	282	DUF316: Domain of unknown function (DUF316) ; Inte	97.81
COG3591	251	V8-like Glu-specific endopeptidase [Amino acid tra	94.51

>KOG3627|consensus

Probab=98.98  E-value=6.9e-10  Score=89.73  Aligned_cols=48  Identities=46%  Similarity=0.838  Sum_probs=44.2

Q ss_pred             CCceeCCEEcCCCCCCeEEEEEeCC--eEeeEEEEeeCCeeeecccccCC
Q psy8663         114 KTRIVGGQVTYVHQYPWMALLMYKK--RFYCGATLINNLYVLTAAHCVHQ  161 (161)
Q Consensus       114 ~~rIvgG~~a~~ge~PW~vsL~~~~--~~~CGGsLIs~~~VLTAAHC~~~  161 (161)
                      ..||+||..+..+++||++++....  .++|||+||+++||||||||+.+
T Consensus        10 ~~~i~~g~~~~~~~~Pw~~~l~~~~~~~~~Cggsli~~~~vltaaHC~~~   59 (256)
T KOG3627|consen   10 EGRIVGGTEAEPGSFPWQVSLQYGGNGRHLCGGSLISPRWVLTAAHCVKG   59 (256)
T ss_pred             cCCEeCCccCCCCCCCCEEEEEECCCcceeeeeEEeeCCEEEEChhhCCC
Confidence            5799999999999999999999875  78999999999999999999863

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=4.7e-08  Score=84.99  Aligned_cols=47  Identities=36%  Similarity=0.747  Sum_probs=42.3

Q ss_pred             CCceeCCEEcCCCCCCeEEEEEeC-----CeEeeEEEEeeCCeeeecccccC
Q psy8663         114 KTRIVGGQVTYVHQYPWMALLMYK-----KRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       114 ~~rIvgG~~a~~ge~PW~vsL~~~-----~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ..||+||..+..++||.+|+|...     ...+|||+++..|||||||||+.
T Consensus        30 s~rIigGs~Anag~~P~~VaLv~~isd~~s~tfCGgs~l~~RYvLTAAHC~~   81 (413)
T COG5640          30 SSRIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCAD   81 (413)
T ss_pred             ceeEecCcccccccCchHHHHHhhcccccceeEeccceecceEEeeehhhcc
Confidence            579999999999999999998763     34689999999999999999985

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans

Probab=97.81  E-value=2.8e-05  Score=64.41  Aligned_cols=54  Identities=28%  Similarity=0.584  Sum_probs=42.9

Q ss_pred             ccCCCC--CCCceeCCEEcCCCCCCeEEEEEeCC----eEeeEEEEeeCCeeeecccccC
Q psy8663         107 TCGAVN--KKTRIVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       107 ~CG~~~--~~~rIvgG~~a~~ge~PW~vsL~~~~----~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      .||...  ...++..|..+..++.||.+.+....    ..++.|+|||+|||||++||+.
T Consensus        30 ~CG~~~~~~~~~~~~g~~~~~~~~pW~v~v~~~~~~~~~~~~~gtlIS~RHiLtss~~~~   89 (282)
T PF03761_consen   30 TCGKKKLPYPSKVFNGTPAESGEAPWAVSVYTKNHNEGNYFSTGTLISPRHILTSSHCVM   89 (282)
T ss_pred             hcCCCCCCCcccccCCcccccCCCCCEEEEEeccCcccceecceEEeccCeEEEeeeEEE
Confidence            577432  34557888888889999999998743    3467999999999999999984

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

Probab=94.51  E-value=0.048  Score=45.78  Aligned_cols=35  Identities=40%  Similarity=0.684  Sum_probs=27.3

Q ss_pred             CCCCeEEEEEe---CCeEeeEEEEeeCCeeeecccccC
Q psy8663         126 HQYPWMALLMY---KKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       126 ge~PW~vsL~~---~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ..|||.+-..+   .+.+-|+++||+++-+|||+||+.
T Consensus        47 ~~~Py~av~~~~~~tG~~~~~~~lI~pntvLTa~Hc~~   84 (251)
T COG3591          47 TQFPYSAVVQFEAATGRLCTAATLIGPNTVLTAGHCIY   84 (251)
T ss_pred             CCCCcceeEEeecCCCcceeeEEEEcCceEEEeeeEEe
Confidence            46898766655   244557779999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	161
2xxl_A	408	Crystal Structure Of Drosophila Grass Clip Serine P		2e-08
2olg_A	278	Crystal Structure Of The Serine Protease Domain Of		4e-08
2bq6_B	249	Crystal Structure Of Factor Xa In Complex With 21 L		9e-08
1kig_H	241	Bovine Factor Xa Length = 241		4e-07
1ezq_A	254	Crystal Structure Of Human Coagulation Factor Xa Co		3e-06
4dur_A	791	The X-Ray Crystal Structure Of Full-Length Type Ii		3e-06
2bok_A	241	Factor Xa- Cation Length = 241		3e-06
1c5m_D	255	Structural Basis For Selectivity Of A Small Molecul		3e-06
3t2n_A	372	Human Hepsin Protease In Complex With The Fab Fragm		3e-06
1z8g_A	372	Crystal Structure Of The Extracellular Region Of Th		3e-06
2y5f_A	234	Factor Xa - Cation Inhibitor Complex Length = 234		4e-06
1hcg_A	241	Structure Of Human Des(1-45) Factor Xa At 2.2 Angst		4e-06
1fax_A	254	Coagulation Factor Xa Inhibitor Complex Length = 25		4e-06
2gd4_H	241	Crystal Structure Of The Antithrombin-S195a Factor		4e-06
1mq5_A	233	Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-ch		4e-06
3ens_B	238	Crystal Structure Of Human Fxa In Complex With Meth		4e-06
1fjs_A	234	Crystal Structure Of The Inhibitor Zk-807834 (Ci-10		4e-06
1xka_C	235	Factor Xa Complexed With A Synthetic Inhibitor Fx-2		4e-06
1bui_B	250	Structure Of The Ternary Microplasmin-Staphylokinas		4e-06
1l4z_A	248	X-Ray Crystal Structure Of The Complex Of Microplas		4e-06
1bml_A	250	Complex Of The Catalytic Domain Of Human Plasmin An		4e-06
1l4d_A	249	Crystal Structure Of Microplasminogen-streptokinase		4e-06
3uir_A	247	Crystal Structure Of The Plasmin-Textilinin-1 Compl		4e-06
1ddj_A	247	Crystal Structure Of Human Plasminogen Catalytic Do		5e-06
1qrz_A	246	Catalytic Domain Of Plasminogen Length = 246		5e-06
1rjx_B	247	Human Plasminogen Catalytic Domain, K698m Mutant Le		6e-06
1pyt_D	251	Ternary Complex Of Procarboxypeptidase A, Proprotei		8e-06
1pfx_C	235	Porcine Factor Ixa Length = 235		9e-06
1spj_A	238	Structure Of Mature Human Tissue Kallikrein (Human		1e-05
1fxy_A	228	Coagulation Factor Xa-Trypsin Chimera Inhibited Wit		1e-05
1hyl_A	230	The 1.8 A Structure Of Collagenase From Hypoderma L		2e-05
4h4f_A	249	Crystal Structure Of Human Chymotrypsin C (ctrc) Bo		2e-05
1o5e_H	255	Dissecting And Designing Inhibitor Selectivity Dete		2e-05
1dan_H	254	Complex Of Active Site Inhibited Human Blood Coagul		2e-05
2f83_A	625	Crystal Structure At 2.9 Angstroms Resolution Of Hu		3e-05
4dgj_A	235	Structure Of A Human Enteropeptidase Light Chain Va		3e-05
1npm_A	225	Neuropsin, A Serine Protease Expressed In The Limbi		3e-05
2oq5_A	232	Crystal Structure Of Desc1, A New Member Of The Typ		3e-05
1mkw_K	308	The Co-Crystal Structure Of Unliganded Bovine Alpha		4e-05
2f9o_A	245	Crystal Structure Of The Recombinant Human Alpha I		4e-05
2f9n_A	245	Crystal Structure Of The Recombinant Human Alpha I		4e-05
1ybw_A	283	Protease Domain Of Hgfa With No Inhibitor Length =		5e-05
2zch_P	237	Crystal Structure Of Human Prostate Specific Antige		5e-05
1euf_A	227	Bovine Duodenase(New Serine Protease), Crystal Stru		6e-05
1fy3_A	225	[g175q]hbp, A Mutant Of Human Heparin Binding Prote		6e-05
1bda_A	265	Catalytic Domain Of Human Single Chain Tissue Plasm		6e-05
1a7s_A	225	Atomic Resolution Structure Of Hbp Length = 225		6e-05
2vnt_A	276	Urokinase-Type Plasminogen Activator Inhibitor Comp		7e-05
4gso_A	232	Structure Of Jararacussin-I Length = 232		8e-05
3nxp_A	424	Crystal Structure Of Human Prethrombin-1 Length = 4		8e-05
1lto_A	245	Human Alpha1-Tryptase Length = 245		9e-05
2wph_S	235	Factor Ixa Superactive Triple Mutant Length = 235		9e-05
1eq9_A	222	Crystal Structure Of Fire Ant Chymotrypsin Complexe		9e-05
2wpm_S	235	Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Le		9e-05
1elt_A	236	Structure Of Native Pancreatic Elastase From North		1e-04
2wpi_S	235	Factor Ixa Superactive Double Mutant Length = 235		1e-04
1hne_E	218	Structure Of Human Neutrophil Elastase In Complex W		1e-04
1fdp_A	235	Proenzyme Of Human Complement Factor D, Recombinant		1e-04
1ppg_E	218	The Refined 2.3 Angstroms Crystal Structure Of Huma		1e-04
2rg3_A	218	Covalent Complex Structure Of Elastase Length = 218		1e-04
1ppf_E	218	X-Ray Crystal Structure Of The Complex Of Human Leu		1e-04
1rfn_A	235	Human Coagulation Factor Ixa In Complex With P-Amin		1e-04
3kcg_H	235	Crystal Structure Of The Antithrombin-Factor Ixa- P		1e-04
1jwt_A	305	Crystal Structure Of Thrombin In Complex With A Nov		1e-04
1nu9_A	291	Staphylocoagulase-prethrombin-2 Complex Length = 29		1e-04
1hag_E	295	The Isomorphous Structures Of Prethrombin2, Hirugen		1e-04
3gyl_B	261	Structure Of Prostasin At 1.3 Angstroms Resolution		1e-04
3e0p_B	271	The X-Ray Structure Of Human Prostasin In Complex W		1e-04
3sqe_E	290	Crystal Structure Of Prethrombin-2 Mutant S195a In		1e-04
1vr1_H	261	Specifity For Plasminogen Activator Inhibitor-1 Len		1e-04
2bdy_A	289	Thrombin In Complex With Inhibitor Length = 289		1e-04
2cga_A	245	Bovine Chymotrypsinogen A. X-Ray Crystal Structure		1e-04
1nm6_A	287	Thrombin In Complex With Selective Macrocyclic Inhi		1e-04
1eoj_A	289	Design Of P1' And P3' Residues Of Trivalent Thrombi		1e-04
1mh0_A	287	Crystal Structure Of The Anticoagulant Slow Form Of		1e-04
1d9i_A	288	Structure Of Thrombin Complexed With Selective Non-		1e-04
3k65_B	308	Crystal Structure Of Prethombin-2FRAGMENT-2 Complex		1e-04
1d6w_A	287	Structure Of Thrombin Complexed With Selective Non-		1e-04
1mza_A	240	Crystal Structure Of Human Pro-Granzyme K Length =		1e-04
3ela_H	254	Crystal Structure Of Active Site Inhibited Coagulat		1e-04
3dfj_A	263	Crystal Structure Of Human Prostasin Length = 263		1e-04
1a5i_A	265	Catalytic Domain Of Vampire Bat (Desmodus Rotundus)		1e-04
2zgc_A	240	Crystal Structure Of Active Human Granzyme M Length		2e-04
2zgj_A	240	Crystal Structure Of D86n-gzmm Complexed With Its O		2e-04
1dm4_B	260	Ser195ala Mutant Of Human Thrombin Complexed With F		2e-04
1b0f_A	218	Crystal Structure Of Human Neutrophil Elastase With		2e-04
2any_A	241	Expression, Crystallization And The Three-Dimension		3e-04
1bru_P	241	Structure Of Porcine Pancreatic Elastase Complexed		3e-04
1bbr_H	150	The Structure Of Residues 7-16 Of The A Alpha Chain		3e-04
2kai_A	80	Refined 2.5 Angstroms X-Ray Crystal Structure Of Th		3e-04
1bbr_K	259	The Structure Of Residues 7-16 Of The A Alpha Chain		3e-04
1rtf_B	252	Complex Of Benzamidine With The Catalytic Domain Of		3e-04
1id5_H	256	Crystal Structure Of Bovine Thrombin Complex With P		3e-04
2anw_A	241	Expression, Crystallization And Three-Dimensional S		3e-04
1aut_C	250	Human Activated Protein C Length = 250		3e-04
2psx_A	227	Crystal Structure Of Human Kallikrein 5 In Complex		3e-04
1gvz_A	237	Prostate Specific Antigen (Psa) From Stallion Semin		3e-04
1zjd_A	237	Crystal Structure Of The Catalytic Domain Of Coagul		3e-04
3sor_A	238	Factor Xia In Complex With A Clorophenyl-tetrazole		3e-04
1zpz_A	238	Factor Xi Catalytic Domain Complexed With N-((R)-1-		3e-04
1zlr_A	237	Factor Xi Catalytic Domain Complexed With 2-Guanidi		3e-04
1xx9_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		3e-04
3bg8_A	238	Crystal Structure Of Factor Xia In Complex With Cla		3e-04
1zhr_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		3e-04
1xxd_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		3e-04
4gaw_A	226	Crystal Structure Of Active Human Granzyme H Length		4e-04
2xrc_A	565	Human Complement Factor I Length = 565		4e-04
1zhm_A	238	Crystal Structure Of The Catalytic Domain Of The Co		4e-04
1zhp_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		4e-04
3f6u_H	240	Crystal Structure Of Human Activated Protein C (Apc		4e-04
3tju_A	226	Crystal Structure Of Human Granzyme H With An Inhib		4e-04
3fzz_A	227	Structure Of Grc Length = 227		4e-04
3g01_A	227	Structure Of Grc Mutant E192rE193G Length = 227		4e-04
1sc8_U	262	Urokinase Plasminogen Activator B-Chain-J435 Comple		4e-04
1fuj_A	221	Pr3 (Myeloblastin) Length = 221		5e-04
3bsq_A	227	Crystal Structure Of Human Kallikrein 7 Produced As		5e-04
2qxg_A	224	Crystal Structure Of Human Kallikrein 7 In Complex		5e-04
1orf_A	234	The Oligomeric Structure Of Human Granzyme A Reveal		5e-04
1ekb_B	235	The Serine Protease Domain Of Enteropeptidase Bound		5e-04
1op8_A	234	Crystal Structure Of Human Granzyme A Length = 234		6e-04
2hnt_C	70	Crystallographic Structure Of Human Gamma-Thrombin		6e-04
1elv_A	333	Crystal Structure Of The Catalytic Domain Of Human		6e-04
1ao5_A	237	Mouse Glandular Kallikrein-13 (Prorenin Converting		7e-04
1thp_B	259	Structure Of Human Alpha-Thrombin Y225p Mutant Boun		7e-04
1b7x_B	259	Structure Of Human Alpha-Thrombin Y225i Mutant Boun		7e-04
2pgb_B	259	Inhibitor-Free Human Thrombin Mutant C191a-C220a Le		7e-04
1op0_A	234	Crystal Structure Of Aav-sp-i, A Glycosylated Snake		7e-04
2bvr_H	252	Human Thrombin Complexed With Fragment-based Small		7e-04
1z8j_B	259	Crystal Structure Of The Thrombin Mutant G193p Boun		8e-04
1op2_A	234	Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snak		8e-04
3r3g_B	259	Structure Of Human Thrombin With Residues 145-150 O		8e-04
3jz1_B	259	Crystal Structure Of Human Thrombin Mutant N143p In		8e-04
2thf_B	259	Structure Of Human Alpha-thrombin Y225f Mutant Boun		8e-04
3gic_B	250	Structure Of Thrombin Mutant Delta(146-149e) In The		8e-04
4d9q_A	228	Inhibiting Alternative Pathway Complement Activatio		8e-04
1z8i_B	259	Crystal Structure Of The Thrombin Mutant G193a Boun		8e-04
3ee0_B	259	Crystal Structure Of The W215aE217A MUTANT OF HUMAN		8e-04
1h8i_H	253	X-Ray Crystal Structure Of Human Alpha-Thrombin Wit		8e-04
1dx5_M	259	Crystal Structure Of The Thrombin-Thrombomodulin Co		8e-04
1sfq_B	259	Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack		8e-04
1abi_H	259	Structure Of The Hirulog 3-Thrombin Complex And Nat		8e-04
1wbg_B	259	Active Site Thrombin Inhibitors Length = 259		8e-04
1fiw_A	290	Three-Dimensional Structure Of Beta-Acrosin From Ra		8e-04
1vzq_H	250	Complex Of Thrombin With Designed Inhibitor 7165 Le		8e-04
1tq0_B	257	Crystal Structure Of The Potent Anticoagulant Throm		8e-04
1bth_H	259	Structure Of Thrombin Complexed With Bovine Pancrea		8e-04
1h8d_H	260	X-Ray Structure Of The Human Alpha-Thrombin Complex		8e-04
1gj5_H	258	Selectivity At S1, H2o Displacement, Upa, Tpa, Ser1		8e-04
1rd3_B	259	2.5a Structure Of Anticoagulant Thrombin Variant E2		9e-04
1qur_H	257	Human Alpha-Thrombin In Complex With Bivalent, Benz		9e-04
1jou_B	259	Crystal Structure Of Native S195a Thrombin With An		9e-04
2od3_B	259	Human Thrombin Chimera With Human Residues 184a, 18		9e-04
2a0q_B	257	Structure Of Thrombin In 400 Mm Potassium Chloride		9e-04
1iau_A	227	Human Granzyme B In Complex With Ac-Iepd-Cho Length		9e-04
1bhx_B	147	X-Ray Structure Of The Complex Of Human Alpha Throm		9e-04
2gp9_B	259	Crystal Structure Of The Slow Form Of Thrombin In A		9e-04

>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease Of Toll Pathway Length = 408

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 70  DYTSWFQELISGFVTNQEESTPPEP-----VKPVDLEKCGPCTCGAVNKKTRIVGGQVTY 124
           DY S+ Q+ + G          P        K + L K     CG    + R+  G    
Sbjct: 68  DYASYLQKALCGEFNGVRHFCCPSANIQHNSKVMSLFKDENFDCGNFLSQ-RVSNGYEVK 126
Query: 125 VHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 160
           +   PWMALL Y++    RF CG  +I+  Y+LTAAHCVH
Sbjct: 127 LSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVH 166

>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of Prophenoloxidase Activating Factor-I In A Zymogen Form Length = 278

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 105 PCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYK-----KRFYCGATLINNLYVLTAAHCV 159
           P  CG   +  +I+ G  T   ++PW A++ YK     ++F CG +LINN Y++TAAHCV
Sbjct: 11  PNDCGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCV 70

>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21 Length = 249

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 112 NKKTRIVGGQVTYVHQYPWMALLMYKKR-FYCGATLINNLYVLTAAHCVHQ 161
           N  TRIVGGQ     + PW ALL+ ++   +CG T+++  Y+LTAAHC++Q
Sbjct: 11  NNLTRIVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 61

>pdb|1KIG|H Chain H, Bovine Factor Xa Length = 241

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKR-FYCGATLINNLYVLTAAHCVHQ 161
           IVGG+     + PW ALL+ ++   +CG T++N  YVLTAAHC+HQ
Sbjct: 1   IVGGRDCAEGECPWQALLVNEENEGFCGGTILNEFYVLTAAHCLHQ 46

>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 254

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKR-FYCGATLINNLYVLTAAHCVHQ 161
           IVGGQ     + PW ALL+ ++   +CG T+++  Y+LTAAHC++Q
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46

>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human Plasminogen Length = 791

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Query: 116 RIVGGQVTYVHQYPWMALLMYKKRF---YCGATLINNLYVLTAAHCVHQ 161
           R+VGG V + H +PW   L  + RF   +CG TLI+  +VLTAAHC+ +
Sbjct: 561 RVVGGCVAHPHSWPWQVSL--RTRFGMHFCGGTLISPEWVLTAAHCLEK 607

>pdb|2BOK|A Chain A, Factor Xa- Cation Length = 241

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKR-FYCGATLINNLYVLTAAHCVHQ 161
           IVGGQ     + PW ALL+ ++   +CG T+++  Y+LTAAHC++Q
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46

>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type Plasminogen Activator Length = 255

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKR-FYCGATLINNLYVLTAAHCVHQ 161
           IVGGQ     + PW ALL+ ++   +CG T+++  Y+LTAAHC++Q
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46

>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of An Inhibitory Antibody Length = 372

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 116 RIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           RIVGG+ T + ++PW   L Y     CG +L++  +VLTAAHC
Sbjct: 117 RIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHC 159

>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The Transmembrane Serine Protease Hepsin With Covalently Bound Preferred Substrate Length = 372

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 116 RIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           RIVGG+ T + ++PW   L Y     CG +L++  +VLTAAHC
Sbjct: 117 RIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHC 159

>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex Length = 234

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKR-FYCGATLINNLYVLTAAHCVHQ 161
           IVGGQ     + PW ALL+ ++   +CG T+++  Y+LTAAHC++Q
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46

>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms Resolution Length = 241

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKR-FYCGATLINNLYVLTAAHCVHQ 161
           IVGGQ     + PW ALL+ ++   +CG T+++  Y+LTAAHC++Q
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46

>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex Length = 254

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKR-FYCGATLINNLYVLTAAHCVHQ 161
           IVGGQ     + PW ALL+ ++   +CG T+++  Y+LTAAHC++Q
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46

>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor Xa-Pentasaccharide Complex Length = 241

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKR-FYCGATLINNLYVLTAAHCVHQ 161
           IVGGQ     + PW ALL+ ++   +CG T+++  Y+LTAAHC++Q
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46

>pdb|1MQ5|A Chain A, Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-chlorophenyl) Amino]carbonyl]phenyl]-4-[(4-methyl-1- piperazinyl)methyl]-2- Thiophenecarboxamide Complexed With Human Factor Xa Length = 233

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKR-FYCGATLINNLYVLTAAHCVHQ 161
           IVGGQ     + PW ALL+ ++   +CG T+++  Y+LTAAHC++Q
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46

>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2- oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 238

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKR-FYCGATLINNLYVLTAAHCVHQ 161
           IVGGQ     + PW ALL+ ++   +CG T+++  Y+LTAAHC++Q
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46

>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031) Complexed With Factor Xa Length = 234

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKR-FYCGATLINNLYVLTAAHCVHQ 161
           IVGGQ     + PW ALL+ ++   +CG T+++  Y+LTAAHC++Q
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46

>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor Fx-2212a,(2s)-(3'- Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid Length = 235

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKR-FYCGATLINNLYVLTAAHCVHQ 161
           IVGGQ     + PW ALL+ ++   +CG T+++  Y+LTAAHC++Q
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46

>pdb|1BUI|B Chain B, Structure Of The Ternary Microplasmin-Staphylokinase-Microplasmin Complex: A Proteinase-Cofactor-Substrate Complex In Action Length = 250

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Query: 116 RIVGGQVTYVHQYPWMALLMYKKRF---YCGATLINNLYVLTAAHCVHQ 161
           R+VGG V + H +PW   L  + RF   +CG TLI+  +VLTAAHC+ +
Sbjct: 20  RVVGGCVAHPHSWPWQVSL--RTRFGMHFCGGTLISPEWVLTAAHCLEK 66

>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen With Alpha Domain Of Streptokinase In The Presence Cadmium Ions Length = 248

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Query: 116 RIVGGQVTYVHQYPWMALLMYKKRF---YCGATLINNLYVLTAAHCVHQ 161
           R+VGG V + H +PW   L  + RF   +CG TLI+  +VLTAAHC+ +
Sbjct: 18  RVVGGCVAHPHSWPWQVSL--RTRFGMHFCGGTLISPEWVLTAAHCLEK 64

>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And Streptokinase Length = 250

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Query: 116 RIVGGQVTYVHQYPWMALLMYKKRF---YCGATLINNLYVLTAAHCVHQ 161
           R+VGG V + H +PW   L  + RF   +CG TLI+  +VLTAAHC+ +
Sbjct: 20  RVVGGCVAHPHSWPWQVSL--RTRFGMHFCGGTLISPEWVLTAAHCLEK 66

>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha Domain Complex Length = 249

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Query: 116 RIVGGQVTYVHQYPWMALLMYKKRF---YCGATLINNLYVLTAAHCVHQ 161
           R+VGG V + H +PW   L  + RF   +CG TLI+  +VLTAAHC+ +
Sbjct: 19  RVVGGCVAHPHSWPWQVSL--RTRFGMHFCGGTLISPEWVLTAAHCLEK 65

>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex Length = 247

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Query: 116 RIVGGQVTYVHQYPWMALLMYKKRF---YCGATLINNLYVLTAAHCVHQ 161
           R+VGG V + H +PW   L  + RF   +CG TLI+  +VLTAAHC+ +
Sbjct: 17  RVVGGCVAHPHSWPWQVSL--RTRFGMHFCGGTLISPEWVLTAAHCLEK 63

>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain Length = 247

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Query: 116 RIVGGQVTYVHQYPWMALLMYKKRF---YCGATLINNLYVLTAAHCVHQ 161
           R+VGG V + H +PW   L  + RF   +CG TLI+  +VLTAAHC+ +
Sbjct: 17  RVVGGCVAHPHSWPWQVSL--RTRFGMHFCGGTLISPEWVLTAAHCLEK 63

>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen Length = 246

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Query: 116 RIVGGQVTYVHQYPWMALLMYKKRF---YCGATLINNLYVLTAAHCVHQ 161
           R+VGG V + H +PW   L  + RF   +CG TLI+  +VLTAAHC+ +
Sbjct: 16  RVVGGCVAHPHSWPWQVSL--RTRFGQHFCGGTLISPEWVLTAAHCLEK 62

>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant Length = 247

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRF---YCGATLINNLYVLTAAHCVHQ 161
           +VGG V Y H +PW   L  + RF   +CG TLI+  +VLTAAHC+ +
Sbjct: 18  VVGGCVAYPHSWPWQVSL--RTRFGMHFCGGTLISPEWVLTAAHCLEK 63

>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 251

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 112 NKKTRIVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQ 161
           N   R+VGG+    H +PW   L Y +    R  CG TLI   +VLTAAHC+  
Sbjct: 9   NLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISN 62

>pdb|1PFX|C Chain C, Porcine Factor Ixa Length = 235

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           IVGG+     Q+PW  LL  K   +CG ++IN  +V+TAAHC+
Sbjct: 1   IVGGENAKPGQFPWQVLLNGKIDAFCGGSIINEKWVVTAAHCI 43

>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With Vacant Active Site Length = 238

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           IVGG     H  PW A L +   F CG  L++  +VLTAAHC+
Sbjct: 1   IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCI 43

>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With D-Phe-Pro-Arg- Chloromethylketone Length = 228

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKR-FYCGATLINNLYVLTAAHCVHQ 161
           IVGG      + PW ALL+ ++   +CG T+++  Y+LTAAHC++Q
Sbjct: 1   IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46

>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum Length = 230

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 117 IVGGQVTYVHQYPWMA----LLMYKKRFYCGATLINNLYVLTAAHCVH 160
           I+ G   Y   +P+ A     L  ++R +CG +LI+N ++LTAAHCVH
Sbjct: 1   IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVH 48

>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To Inhibitor Eglin C From Hirudo Medicinalis Length = 249

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCV 159
           +VGG+    H +PW   L Y K    R  CG TLI + +VLTAAHC+
Sbjct: 1   VVGGEDARPHSWPWQISLQYLKNDTWRHTCGGTLIASNFVLTAAHCI 47

>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (ala190 Upa) Length = 255

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           IVGG+ T + ++PW   L Y     CG +L++  +VLTAAHC
Sbjct: 1   IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHC 42

>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation Factor Viia With Human Recombinant Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           IVGG+V    + PW  LL+      CG TLIN ++V++AAHC
Sbjct: 1   IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHC 42

>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human Plasma Coagulation Factor Xi Zymogen Length = 625

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 114 KTRIVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
           K RIVGG  +   ++PW   L      +R  CG ++I N ++LTAAHC +
Sbjct: 385 KPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY 434

>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant Length = 235

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG       +PW+  L Y  R  CGA+L+++ ++++AAHCV+
Sbjct: 1   IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVY 44

>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic System Of Mouse Brain Length = 225

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           I+ G+    H  PW A L   +R  CG  L+ + +VLTAAHC  Q
Sbjct: 1   ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKKQ 45

>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii Transmembrane Serine Proteinases Family Length = 232

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           IVGG      ++PW A L +     CGATLIN  ++++AAHC
Sbjct: 1   IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHC 42

>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha- Thrombin And Prethrombin-2: Movement Of The Yppw Segment And Active Site Residues Upon Ligand Binding Length = 308

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 116 RIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           RIV GQ   V   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 49  RIVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 94

>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant D216g Length = 245

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRF---YCGATLINNLYVLTAAHCV 159
           IVGGQ     ++PW   L  + R+   +CG +LI+  +VLTAAHCV
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCV 46

>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN Length = 245

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRF---YCGATLINNLYVLTAAHCV 159
           IVGGQ     ++PW   L  + R+   +CG +LI+  +VLTAAHCV
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCV 46

>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor Length = 283

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 89  STPPEPVKPVDLEKCGPCTCGAVNKKT-----RIVGGQVTYVHQYPWMALLMYKKRFYCG 143
           +T PEP  P      G   CG  +KK      RI+GG  +    +PW+A + Y    +C 
Sbjct: 9   ATLPEPASP------GRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAI-YIGDSFCA 61
Query: 144 ATLINNLYVLTAAHC 158
            +L++  +V++AAHC
Sbjct: 62  GSLVHTCWVVSAAHC 76

>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen Complexed With An Activating Antibody Length = 237

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           IVGG     H  PW  L+  + R  CG  L++  +VLTAAHC+  
Sbjct: 1   IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRN 45

>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure Length = 227

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCV 159
           I+GG     H  P+MA L++K   K   CG  L+   +VLTAAHC+
Sbjct: 1   IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCL 46

>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein (cap37) Length = 225

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG+     Q+P++A +  + R +CG  LI+  +V+TAA C  
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQ 44

>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen Activator In Complex With Dansyl-Egr-Cmk (Dansyl-Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 116 RIVGGQVTYVHQYPWMALLMYK------KRFYCGATLINNLYVLTAAHCVHQ 161
           RI GG    +  +PW A +  K      +RF CG  LI++ ++L+AAHC  +
Sbjct: 13  RIKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQE 64

>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp Length = 225

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG+     Q+P++A +  + R +CG  LI+  +V+TAA C  
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQ 44

>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex With A 1-(7-Sulphoamidoisoquinolinyl)guanidine Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 12/75 (16%)
Query: 89  STPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKR-----FYCG 143
           S+PPE +K     +CG  T   +  + +I+GG+ T +   PW A +  + R     + CG
Sbjct: 3   SSPPEELK----FQCGQKT---LRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCG 55
Query: 144 ATLINNLYVLTAAHC 158
            +L++  +V++A HC
Sbjct: 56  GSLMSPCWVISATHC 70

>pdb|4GSO|A Chain A, Structure Of Jararacussin-I Length = 232

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           ++GG    ++++P++A L Y   ++CG TLIN  +V+TAAHC
Sbjct: 1   VLGGDECDINEHPFLAFL-YSHGYFCGLTLINQEWVVTAAHC 41

>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1 Length = 424

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 116 RIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           RIV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 165 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 210

>pdb|1LTO|A Chain A, Human Alpha1-Tryptase Length = 245

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRF---YCGATLINNLYVLTAAHCV 159
           IVGGQ     ++PW   L  + R+   +CG +LI+  +VLTAAHC+
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCL 46

>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant Length = 235

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           +VGG+     Q+PW  +L  K   +CG +++N  +++TAAHCV
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCV 43

>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To Pmsf Length = 222

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           IVGG+   V +YP+   L       CGA++++N  VLTAAHCV
Sbjct: 1   IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCV 43

>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Length = 235

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           +VGG+     Q+PW  +L  K   +CG +++N  +++TAAHCV
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCV 43

>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North Atlantic Salmon At 1.61 Angstroms Resolution Length = 236

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 117 IVGGQVTYVHQYPWMALLMYKK--RFY--CGATLINNLYVLTAAHCV 159
           +VGG+V   + +PW   L YK    +Y  CG +LI   +V+TAAHCV
Sbjct: 1   VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCV 47

>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant Length = 235

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           +VGG+     Q+PW  +L  K   +CG +++N  +++TAAHCV
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCV 43

>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms Resolution Length = 218

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           IVGG+    H +P+M  L  +   +CGATLI   +V++AAHC
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHC 42

>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant Profactor D Length = 235

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 114 KTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           + RI+GG+    H  P+MA +       CG  L+   +VL+AAHC+
Sbjct: 5   RGRILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCL 50

>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human Leukocyte Elastase In A Complex With A Valine Chloromethyl Ketone Inhibitor Length = 218

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           IVGG+    H +P+M  L  +   +CGATLI   +V++AAHC
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHC 42

>pdb|2RG3|A Chain A, Covalent Complex Structure Of Elastase Length = 218

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           IVGG+    H +P+M  L  +   +CGATLI   +V++AAHC
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHC 42

>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte Elastase (Pmn Elastase) And The Third Domain Of The Turkey Ovomucoid Inhibitor Length = 218

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           IVGG+    H +P+M  L  +   +CGATLI   +V++AAHC
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHC 42

>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino Benzamidine Length = 235

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           +VGG+     Q+PW  +L  K   +CG +++N  +++TAAHCV
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCV 43

>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa- Pentasaccharide Complex Length = 235

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           +VGG+     Q+PW  +L  K   +CG +++N  +++TAAHCV
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCV 43

>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel Bicyclic Lactam Inhibitor Length = 305

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 116 RIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           RIV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 36  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 81

>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex Length = 291

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 116 RIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           RIV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 32  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 77

>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And Ppack- Thrombin: Changes Accompanying Activation And Exosite Binding To Thrombin Length = 295

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 116 RIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           RIV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 36  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 81

>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In Complex With A Calcium Ion. Length = 261

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           I GG      Q+PW   + Y+    CG +L++  +VL+AAHC
Sbjct: 1   ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHC 42

>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A Covalent Benzoxazole Inhibitor Length = 271

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           I GG      Q+PW   + Y+    CG +L++  +VL+AAHC
Sbjct: 1   ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHC 42

>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The Alternative Form Length = 290

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 116 RIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           RIV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 31  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 76

>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1 Length = 261

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 117 IVGGQVTYVHQYPWMALLMYK------KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K      +RF CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFAKHRRSPGERFLCGASLISDRWVLTAAHCL 49

>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor Length = 289

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 116 RIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           RIV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 30  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 75

>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure Analysis And Refinement Of A New Crystal Form At 1.8 Angstroms Resolution Length = 245

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 115 TRIVGGQVTYVHQYPWMALLMYKKRF-YCGATLINNLYVLTAAHC 158
           +RIV G+      +PW   L  K  F +CG +LIN  +V+TAAHC
Sbjct: 14  SRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHC 58

>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor At 1.8a Length = 287

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 116 RIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           RIV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 29  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 74

>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin Inhibitors And Their Crystal Structures Length = 289

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 116 RIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           RIV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 32  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 77

>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of Thrombin Length = 287

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 116 RIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           RIV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 30  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 75

>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 288

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 116 RIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           RIV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 30  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 75

>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex Length = 308

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 116 RIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           RIV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 49  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 94

>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electrophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 287

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 116 RIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           RIV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 30  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 75

>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K Length = 240

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           I+GG+    H  P+MA + Y     CG  LI+  +VLTAAHC ++
Sbjct: 3   IIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYR 47

>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation Factor Viia Mutant In Complex With Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           IVGG+     + PW  LL+      CG TLIN ++V++AAHC
Sbjct: 1   IVGGKDCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHC 42

>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin Length = 263

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           I GG      Q+PW   + Y+    CG +L++  +VL+AAHC
Sbjct: 1   ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHC 42

>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva Plasminogen Activator In Complex With Egr-Cmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 107 TCGAVNKKT---RIVGGQVTYVHQYPWMALLMYK------KRFYCGATLINNLYVLTAAH 157
           TCG    K       GG  T +  +PW A +  +      +RF CG  LI++ +VLTAAH
Sbjct: 1   TCGLRKYKEPQLHSTGGLFTDITSHPWQAAIFAQNRRSSGERFLCGGILISSCWVLTAAH 60
Query: 158 CVHQ 161
           C  +
Sbjct: 61  CFQE 64

>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M Length = 240

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           I+GG+    H  P+MA L       CG  L++  +VLTAAHC+ Q
Sbjct: 1   IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQ 45

>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal Synthesized Substrate Length = 240

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           I+GG+    H  P+MA L       CG  L++  +VLTAAHC+ Q
Sbjct: 1   IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQ 45

>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With Fibrinopeptide A (7- 16) Length = 260

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 116 RIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           RIV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 46

>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl 101, 146 Length = 218

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           IVGG+    H +P+M  L      +CGATLI   +V++AAHC
Sbjct: 1   IVGGRRARPHAWPFMVSLQLAGGHFCGATLIAPNFVMSAAHC 42

>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHC 158
           IVGG  +   ++PW   L  K   +R  CG +LI + +VLTAAHC
Sbjct: 1   IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHC 45

>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With The Elastase Inhibitor Gr143783 Length = 241

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 117 IVGGQVTYVHQYPWMALLMY----KKRFYCGATLINNLYVLTAAHCV 159
           +VGG+    + +PW   L Y    + R  CG TL++  +VLTAAHC+
Sbjct: 1   VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCI 47

>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 150

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV GQ   V   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|2KAI|A Chain A, Refined 2.5 Angstroms X-Ray Crystal Structure Of The Complex Formed By Porcine Kallikrein A And The Bovine Pancreatic Trypsin Inhibitor. Crystallization, Patterson Search, Structure Determination, Refinement, Structure And Comparison With Its Components And With The Bovine Trypsin- Pancreatic Trypsin Inhibitor Complex Length = 80

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           I+GG+    + +PW   + +   F CG  L+N  +VLTAAHC
Sbjct: 1   IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHC 42

>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 259

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV GQ   V   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa] Length = 252

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 117 IVGGQVTYVHQYPWMALLMYK------KRFYCGATLINNLYVLTAAHCVHQ 161
           I GG    +  +PW A +  K      +RF CG  LI++ ++L+AAHC  +
Sbjct: 1   IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQE 51

>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease Inhibitor Ecotin Length = 256

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV GQ   V   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHC 158
           IVGG  +   ++PW   L  K   +R  CG +LI + +VLTAAHC
Sbjct: 1   IVGGTNSSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHC 45

>pdb|1AUT|C Chain C, Human Activated Protein C Length = 250

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 117 IVGGQVTYVHQYPWMALLM-YKKRFYCGATLINNLYVLTAAHCV 159
           ++ G++T     PW  +L+  KK+  CGA LI+  +VLTAAHC+
Sbjct: 1   LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCM 44

>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With Leupeptin Length = 227

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 117 IVGGQVTYVHQYPWMA-LLMYKKRFYCGATLINNLYVLTAAHC 158
           I+ G    +H  PW A LL+   + YCGA L++  ++LTAAHC
Sbjct: 1   IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHC 43

>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal Plasma Length = 237

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           I+GG     H  PW   + ++  F CG  L++  +VLTAAHC+
Sbjct: 1   IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCM 43

>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Kunitz Protease Inhibitor Domain Of Protease Nexin Ii Length = 237

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
           IVGG  +   ++PW   L      +R  CG ++I N ++LTAAHC +
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY 47

>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole Inhibitor Length = 238

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
           IVGG  +   ++PW   L      +R  CG ++I N ++LTAAHC +
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY 47

>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4- Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole Length = 238

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
           IVGG  +   ++PW   L      +R  CG ++I N ++LTAAHC +
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY 47

>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With 2-Guanidino-1-(4-(4,4,5,5- Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl Nicotinate Length = 237

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
           IVGG  +   ++PW   L      +R  CG ++I N ++LTAAHC +
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY 47

>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Ecotinm84r Length = 238

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
           IVGG  +   ++PW   L      +R  CG ++I N ++LTAAHC +
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY 47

>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With Clavatadine A Length = 238

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
           IVGG  +   ++PW   L      +R  CG ++I N ++LTAAHC +
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY 47

>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-C482s-K437a Mutant) Length = 238

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
           IVGG  +   ++PW   L      +R  CG ++I N ++LTAAHC +
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY 47

>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Mutated Ecotin Length = 238

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
           IVGG  +   ++PW   L      +R  CG ++I N ++LTAAHC +
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY 47

>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H Length = 226

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMY---KKRFYCGATLINNLYVLTAAHC 158
           I+GG     H  P+MA + +   K R  CG  L+   +VLTAAHC
Sbjct: 1   IIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHC 45

>pdb|2XRC|A Chain A, Human Complement Factor I Length = 565

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 107 TCGAVNK----KTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           +CG  N+    + RIVGG+   +   PW   +       CG   I   ++LTAAHC+
Sbjct: 308 SCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCL 364

>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The Coagulation Factor Xia In Complex With Benzamidine (s434a- T475a-k437 Mutant) Length = 238

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
           IVGG  +   ++PW   L      +R  CG ++I N ++LTAAHC +
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY 47

>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-K505 Mutant) Length = 238

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
           IVGG  +   ++PW   L      +R  CG ++I N ++LTAAHC +
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY 47

>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc) Complexed With Ppack Length = 240

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 117 IVGGQVTYVHQYPWMALLM-YKKRFYCGATLINNLYVLTAAHCVHQ 161
           ++ G++T     PW  +L+  KK+  CGA LI+  +VLTAAHC+ +
Sbjct: 1   LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDE 46

>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor Length = 226

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMY---KKRFYCGATLINNLYVLTAAHC 158
           I+GG     H  P+MA + +   K R  CG  L+   +VLTAAHC
Sbjct: 1   IIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHC 45

>pdb|3FZZ|A Chain A, Structure Of Grc Length = 227

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 117 IVGGQVTYVHQYPWMA----LLMYKKRFYCGATLINNLYVLTAAHC 158
           I+GG     H  P+MA    L +  K+ +CG  L+ + +VLTAAHC
Sbjct: 1   IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHC 46

>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G Length = 227

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 117 IVGGQVTYVHQYPWMA----LLMYKKRFYCGATLINNLYVLTAAHC 158
           I+GG     H  P+MA    L +  K+ +CG  L+ + +VLTAAHC
Sbjct: 1   IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHC 46

>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex Length = 262

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 106 CTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKR-----FYCGATLINNLYVLTAAHC 158
           C    +  + +I+GG+ T +   PW A +  + R     + CG +LI+  +V++A HC
Sbjct: 5   CGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHC 62

>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin) Length = 221

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKR---FYCGATLINNLYVLTAAHCV 159
           IVGG     H  P+MA L  +      +CG TLI+  +VLTAAHC+
Sbjct: 1   IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCL 46

>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A Secretion Protein In E.Coli Length = 227

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           I+ G       +PW   L+   + +CG  L+N  +VLTAAHC
Sbjct: 1   IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHC 42

>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With Ala- Ala-phe-chloromethylketone Length = 224

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           I+ G       +PW   L+   + +CG  L+N  +VLTAAHC
Sbjct: 1   IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHC 42

>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The Molecular Determinants Of Substrate Specificity Length = 234

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           I+GG     H  P+M LL   ++  C   LI   +VLTAAHC
Sbjct: 1   IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHC 42

>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane Length = 235

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG  +    +PW+  L +  +  CGA+L++  ++++AAHCV+
Sbjct: 1   IVGGSDSREGAWPWVVALYFDDQQVCGASLVSRDWLVSAAHCVY 44

>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A Length = 234

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           I+GG     H  P+M LL   ++  C   LI   +VLTAAHC
Sbjct: 1   IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHC 42

>pdb|2HNT|C Chain C, Crystallographic Structure Of Human Gamma-Thrombin Length = 70

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Complement C1s Protease Length = 333

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 99  DLEKCGPCTCGA----VNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLT 154
           +L KC P  CG       +K RI+GG    +  +PW          + G  LIN  +VLT
Sbjct: 62  ELPKCVP-VCGVPREPFEEKQRIIGGSDADIKNFPWQVFF---DNPWAGGALINEYWVLT 117
Query: 155 AAHCVH 160
           AAH V 
Sbjct: 118 AAHVVE 123

>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme) Length = 237

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           +VGG     +  PW   + Y+K   CG  L++  +VLTAAHC
Sbjct: 1   VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHC 42

>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To D-Phe-Pro-Arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D- Phe-Pro-Arg-Chloromethylketone Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           ++GG    ++++ ++        F+CG TLIN  +V+TAAHC
Sbjct: 1   VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHC 42

>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small Molecules Occupying The S1 Pocket Length = 252

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To Ppack Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           ++GG    ++++ ++        F+CG TLIN  +V+TAAHC
Sbjct: 1   VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHC 42

>pdb|3R3G|B Chain B, Structure Of Human Thrombin With Residues 145-150 Of Murine Thrombin Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+ Form Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To D-phe-pro-arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free Form Length = 250

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By Targeting The Exosite On Factor D Length = 228

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           I+GG+    H  P+MA +       CG  L+   +VL+AAHC+
Sbjct: 1   ILGGREAEAHARPYMASVQVNGEHLCGGVLVAEQWVLSAAHCL 43

>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To Ppack Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN Thrombin (Space Group P2(1)2(1)2(1)) Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A Tripeptide Phosphonate Inhibitor Length = 253

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of The S' Subsites Of Substrates And Inhibitors Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram Spermatozoa Length = 290

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 117 IVGGQVTYVHQYPWMALLM----YKKRFY--CGATLINNLYVLTAAHCVH 160
           I+GGQ      +PWM  L     +  R Y  CG +L+N+ ++LTAAHC  
Sbjct: 1   IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFR 50

>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165 Length = 250

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin Mutant W215aE217A IN FREE FORM Length = 257

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A Tripeptide Phosphonate Inhibitor Length = 260

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa, Ser190ALA190 PROTEASE, Structure-Based Drug Design Length = 258

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent, Benzamidine-Based Synthetic Inhibitor Length = 257

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An Unoccupied Active Site Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186, 186a, 186b, 186c And 222 Replaced By Murine Thrombin Equivalents Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride Length = 257

Iteration: 1
 Score = 39.3 bits (90), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho Length = 227

Iteration: 1
 Score = 39.3 bits (90), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 117 IVGGQVTYVHQYPWMALLMY---KKRFYCGATLINNLYVLTAAHC 158
           I+GG     H  P+MA LM    K    CG  LI + +VLTAAHC
Sbjct: 1   IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHC 45

>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin With The Inhibitor Sdz 229-357 Length = 147

Iteration: 1
 Score = 39.3 bits (90), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self- Inhibited Conformation Length = 259

Iteration: 1
 Score = 39.3 bits (90), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 159
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	8e-26
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	2e-25
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	5e-21
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	1e-20
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	1e-19
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	1e-19
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	3e-19
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	4e-19
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	5e-19
1elv_A	333	Complement C1S component; trypsin-like serin prote	1e-18
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	2e-18
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	2e-18
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	3e-18
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	3e-18
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	1e-17
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	1e-17
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	1e-17
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	2e-17
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	2e-17
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	2e-17
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	4e-17
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	5e-17
1md8_A	329	C1R complement serine protease; innate immunity, a	7e-17
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	8e-17
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	9e-17
2xrc_A	565	Human complement factor I; immune system, hydrolas	9e-17
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	1e-16
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	1e-16
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	1e-16
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	1e-16
1gpz_A	399	Complement C1R component; hydrolase, activation, i	2e-16
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	2e-16
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	2e-16
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	2e-16
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	2e-16
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	3e-16
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	3e-16
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	3e-16
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	3e-16
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	4e-16
2aiq_A	231	Protein C activator; snake venom serine proteinase	4e-16
1aut_C	250	Activated protein C; serine proteinase, plasma cal	5e-16
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	6e-16
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	6e-16
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	8e-16
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	2e-15
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	2e-15
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	2e-15
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	3e-15
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	3e-15
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	5e-15
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	5e-15
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	5e-15
1a7s_A	225	Heparin binding protein; serine protease homolog,	6e-15
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	6e-15
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	6e-15
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	7e-15
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	7e-15
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	7e-15
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	8e-15
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	9e-15
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	1e-14
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	1e-14
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	1e-14
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	1e-14
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	2e-14
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	2e-14
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	3e-14
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	3e-14
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	6e-14
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	6e-14
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	1e-13
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	2e-13
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	3e-13
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	4e-13
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	5e-13
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	7e-13
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	8e-13
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	9e-13
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	9e-13
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	1e-12
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	1e-12
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	2e-12
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	2e-12
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	2e-12
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	4e-12
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	4e-12
3hrz_D	741	Complement factor B; serine protease, glycosilated	1e-10
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	2e-10
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	5e-10
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	5e-09
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	5e-06
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	9e-05

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score = 98.2 bits (245), Expect = 8e-26
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 105 PCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK-----RFYCGATLINNLYVLTAAHCV 159
           P  CG   +  +I+ G  T   ++PW A++ YK      +F CG +LINN Y++TAAHCV
Sbjct: 11  PNDCGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCV 70

Query: 160 H 160
            
Sbjct: 71  A 71

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score = 99.2 bits (247), Expect = 2e-25
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 86  QEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK----RFY 141
              +      K + L K     CG      R+  G    +   PWMALL Y++    RF 
Sbjct: 89  CPSANIQHNSKVMSLFKDENFDCGNFLS-QRVSNGYEVKLSSRPWMALLRYQQFGESRFL 147

Query: 142 CGATLINNLYVLTAAHCVH 160
           CG  +I+  Y+LTAAHCVH
Sbjct: 148 CGGAMISERYILTAAHCVH 166

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score = 85.5 bits (212), Expect = 5e-21
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 99  DLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAA 156
            LE              RIV G    +   PW  +L  K  +   CGA+LI++ +VLTAA
Sbjct: 13  SLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAA 72

Query: 157 HCVHQ 161
           HC+  
Sbjct: 73  HCLLY 77

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score = 83.4 bits (206), Expect = 1e-19
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 100 LEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAH 157
           LE              RIV G    +   PW  +L  K  +   CGA+LI++ +VLTAAH
Sbjct: 149 LEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAH 208

Query: 158 CVHQ 161
           C+  
Sbjct: 209 CLLY 212

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score = 83.0 bits (205), Expect = 1e-19
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 12/88 (13%)

Query: 85  NQEESTPPEPVKPVDLEKCGPCTCGAVNKK---TRIVGGQ-VTYVHQYPWMALLMYK--- 137
            +    P     P  +    P  CG  N++    +I G        ++PWM  ++     
Sbjct: 95  PEGGVLPTPSPTPPVVPVLKPSFCGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVI 154

Query: 138 -----KRFYCGATLINNLYVLTAAHCVH 160
                ++  CG +LI    VLT AHCV+
Sbjct: 155 PGSGEEQLVCGGSLIAPSVVLTGAHCVN 182

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score = 79.9 bits (198), Expect = 3e-19
 Identities = 17/45 (37%), Positives = 28/45 (62%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           +VGG+     Q+PW  +L  K   +CG +++N  +++TAAHCV  
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVET 45

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score = 80.4 bits (199), Expect = 4e-19
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 90  TPPEPVKPVDLEKCGPCTCGAVNKK-----TRIVGGQVTYVHQYPWMALLMYKKRFYCGA 144
           +P       +    G   CG  +KK      RI+GG  +    +PW+A + Y    +C  
Sbjct: 4   SPDLLATLPEPASPGRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAI-YIGDSFCAG 62

Query: 145 TLINNLYVLTAAHCVH 160
           +L++  +V++AAHC  
Sbjct: 63  SLVHTCWVVSAAHCFS 78

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score = 81.3 bits (201), Expect = 5e-19
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 106 CTCGA-VNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
             CG       RIVGG+ T + ++PW   L Y     CG +L++  +VLTAAHC  
Sbjct: 106 QDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFP 161

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score = 79.8 bits (197), Expect = 1e-18
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 99  DLEKCGPCTCG----AVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLT 154
           +L KC P  CG       +K RI+GG    +  +PW          + G  LIN  +VLT
Sbjct: 62  ELPKCVPV-CGVPREPFEEKQRIIGGSDADIKNFPWQVFF---DNPWAGGALINEYWVLT 117

Query: 155 AAHCVHQ 161
           AAH V  
Sbjct: 118 AAHVVEG 124

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score = 77.6 bits (192), Expect = 2e-18
 Identities = 18/44 (40%), Positives = 29/44 (65%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG       +PW+  L Y  R  CGA+L+++ ++++AAHCV+
Sbjct: 1   IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVY 44

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score = 79.4 bits (196), Expect = 2e-18
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 99  DLEKCGP---CTCG--AVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVL 153
             EK  P     CG  A     +I GGQ      +PW  L++          L+ + +VL
Sbjct: 139 KGEKSLPVCEPVCGLSARTTGGQIYGGQKAKPGDFPWQVLILG--GTTAAGALLYDNWVL 196

Query: 154 TAAHCVHQ 161
           TAAH V++
Sbjct: 197 TAAHAVYE 204

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score = 77.7 bits (192), Expect = 3e-18
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           IVGG+V    + PW  LL+      CG TLIN ++V++AAHC  +
Sbjct: 1   IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDK 45

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score = 79.6 bits (196), Expect = 3e-18
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 82  FVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFY 141
           F+    ++        +D+ K     CG        +    +   + PW   +  K +  
Sbjct: 194 FILQDTKALHQVFEHMLDVSKLTDTICG-----VGNMSANASDQERTPWHVTIKPKSQET 248

Query: 142 CGATLINNLYVLTAAHCVHQ 161
           C   LI++ +VLTAAHC   
Sbjct: 249 CRGALISDQWVLTAAHCFRD 268

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score = 75.6 bits (187), Expect = 1e-17
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG     + +P  A L     ++CG +LI+  ++LTAAHC+ 
Sbjct: 1   IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMD 44

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score = 75.7 bits (187), Expect = 1e-17
 Identities = 17/44 (38%), Positives = 24/44 (54%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG       +P++  +      +CG +L+N   VLTAAHCV 
Sbjct: 1   IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVS 44

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score = 75.7 bits (187), Expect = 1e-17
 Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 117 IVGGQVTYVHQYPWMALLM-YKKRFYCGATLINNLYVLTAAHCVHQ 161
           IVGGQ     + PW ALL+  +   +CG T+++  Y+LTAAHC++Q
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score = 77.2 bits (190), Expect = 2e-17
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 84  TNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYK---KRF 140
           +  +       +    L  C          K RIVGG  +   ++PW   L      +R 
Sbjct: 355 SPTKILHGRGGISGYTLRLCKMDNECTTKIKPRIVGGTASVRGEWPWQVTLHTTSPTQRH 414

Query: 141 YCGATLINNLYVLTAAHCVH 160
            CG ++I N ++LTAAHC +
Sbjct: 415 LCGGSIIGNQWILTAAHCFY 434

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score = 74.9 bits (185), Expect = 2e-17
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 115 TRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
              V  QV   +  PW   +    ++ CG  L++  +VLTAAHC +
Sbjct: 2   APPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYN 47

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score = 74.9 bits (185), Expect = 2e-17
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG      ++PW A L +     CGATLIN  ++++AAHC  
Sbjct: 1   IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFT 44

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score = 74.1 bits (183), Expect = 4e-17
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 116 RIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
            I+GG+    H  P+MA + Y     CG  LI+  +VLTAAHC +
Sbjct: 2   EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQY 46

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score = 74.3 bits (183), Expect = 5e-17
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCVHQ 161
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLY 47

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score = 75.2 bits (185), Expect = 7e-17
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 99  DLEKCGPCTCG----AVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLT 154
            + +C P  CG     V ++ RI+GGQ   +  +PW        R   G  L+ + ++LT
Sbjct: 69  KIPRCLPV-CGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILT 125

Query: 155 AAHCVHQ 161
           AAH ++ 
Sbjct: 126 AAHTLYP 132

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score = 73.8 bits (182), Expect = 8e-17
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 117 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCVH 160
           IVGG     +++PW   +  K     +CG ++IN+ +V+ AAHC+ 
Sbjct: 1   IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQ 46

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score = 73.4 bits (181), Expect = 9e-17
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           ++GG    ++++  +        F+C  TLIN  +VLTAAHC 
Sbjct: 1   VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCD 43

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 75.3 bits (185), Expect = 9e-17
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 105 PCTCG----AVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
             +CG       ++ RIVGG+   +   PW   +       CG   I   ++LTAAHC+ 
Sbjct: 306 KLSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLR 365

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score = 73.4 bits (181), Expect = 1e-16
 Identities = 20/43 (46%), Positives = 25/43 (58%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           IVGG     H  PW A L +   F CG  L++  +VLTAAHC+
Sbjct: 1   IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCI 43

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score = 73.0 bits (180), Expect = 1e-16
 Identities = 13/44 (29%), Positives = 28/44 (63%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           I+GG+ + + + PW   ++  ++ +CG +++   +V+TAA CV 
Sbjct: 1   IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVD 44

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score = 72.6 bits (179), Expect = 1e-16
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG+   V +YP+   L       CGA++++N  VLTAAHCV 
Sbjct: 1   IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVD 44

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score = 73.1 bits (180), Expect = 1e-16
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           I GGQ      +PW  L++          L+ + +VLTAAH V++
Sbjct: 1   IYGGQKAKPGDFPWQVLILG--GTTAAGALLYDNWVLTAAHAVYE 43

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score = 74.1 bits (182), Expect = 2e-16
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 94  PVKPVDLEKCGPCTCG----AVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINN 149
             K   + +C P  CG     V ++ +I+GGQ   +  +PW        R   G  L+ +
Sbjct: 132 EQKGEKIPRCLPV-CGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGD 188

Query: 150 LYVLTAAHCVHQ 161
            ++LTAAH ++ 
Sbjct: 189 RWILTAAHTLYP 200

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score = 72.2 bits (178), Expect = 2e-16
 Identities = 17/43 (39%), Positives = 22/43 (51%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           +V G       +P+ A L       CG  LI+ L+VLTAAHC 
Sbjct: 1   LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCK 43

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score = 72.6 bits (179), Expect = 2e-16
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           I+GG+    H  P+MA +       CG  L+   +VL+AAHC+
Sbjct: 1   ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCL 43

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score = 72.2 bits (178), Expect = 2e-16
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           +VGG      ++P+M  L       CG  L     VLTAAHCV 
Sbjct: 1   VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVS 40

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score = 72.2 bits (178), Expect = 2e-16
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG+    H +P+M  L  +   +CGATLI   +V++AAHCV 
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVA 44

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A Length = 80

 Score = 68.3 bits (168), Expect = 3e-16
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           I+GG+    + +PW   + +   F CG  L+N  +VLTAAHC 
Sbjct: 1   IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCK 43

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score = 71.8 bits (177), Expect = 3e-16
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 117 IVGGQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVH 160
           I+ G   Y   +P+ A L       +R +CG +LI+N ++LTAAHCVH
Sbjct: 1   IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVH 48

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score = 71.8 bits (177), Expect = 3e-16
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 158
           I+ G+    H  PW A L   +R  CG  L+ + +VLTAAHC
Sbjct: 1   ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHC 42

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score = 72.3 bits (178), Expect = 3e-16
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVHQ 161
           I  G+       PW+A+L +   + +CG +L+ + +++TAAHC+HQ
Sbjct: 1   IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQ 46

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score = 71.4 bits (176), Expect = 4e-16
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           I+ G       +PW   L+   + +CG  L+N  +VLTAAHC 
Sbjct: 1   IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCK 43

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score = 71.4 bits (176), Expect = 4e-16
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           ++GG    ++++ ++AL+ Y     CG TLIN  +VLTA HC  
Sbjct: 1   VIGGDECNINEHRFLALV-YANGSLCGGTLINQEWVLTARHCDR 43

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score = 71.5 bits (176), Expect = 5e-16
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 117 IVGGQVTYVHQYPWMA-LLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           ++ G++T     PW   LL  KK+  CGA LI+  +VLTAAHC+ +
Sbjct: 1   LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDE 46

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score = 71.1 bits (175), Expect = 6e-16
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 160
           IVGG    + ++P+              +CGA++ N  Y +TA HCV+
Sbjct: 1   IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVY 48

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score = 71.0 bits (175), Expect = 6e-16
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 117 IVGGQVTYVHQYPWMALLM-YKKRFYCGATLINNLYVLTAAHCVHQ 161
           IVGG      + PW ALL+  +   +CG T+++  Y+LTAAHC++Q
Sbjct: 1   IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score = 70.6 bits (174), Expect = 8e-16
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           I+ G+    H  PW A L+ +   +C   L++  +VL+AAHC 
Sbjct: 1   IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCF 43

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
           ++GG      ++PW      +       CGA+L+++   L+A+HCV 
Sbjct: 1   VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVD 47

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK--RFYCGATLINNLYVLTAAHCV 159
           I+GG    ++++ ++  L   +    +CG TLIN  +VLTAAHC 
Sbjct: 1   IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCD 45

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           I+GG     H  PW   + ++  F CG  L++  +VLTAAHC+
Sbjct: 1   IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCM 43

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score = 69.5 bits (171), Expect = 3e-15
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           I+GG+    H  P+MA L       CG  L++  +VLTAAHC+ Q
Sbjct: 1   IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQ 45

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score = 69.2 bits (170), Expect = 3e-15
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
           IVGG  +   ++PW   L  K   +R  CG +LI + +VLTAAHC  
Sbjct: 1   IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFD 47

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score = 68.8 bits (169), Expect = 5e-15
 Identities = 19/44 (43%), Positives = 25/44 (56%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG     H  PW  L+  + R  CG  L++  +VLTAAHC+ 
Sbjct: 1   IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIR 44

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score = 68.8 bits (169), Expect = 5e-15
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           +VGG     +  PW   + Y+K   CG  L++  +VLTAAHC 
Sbjct: 1   VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCY 43

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score = 68.8 bits (169), Expect = 5e-15
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 103 CG-PCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRF-YCGATLINNLYVLTAAHCVH 160
           CG P     ++  +RIV G+      +PW   L  K  F +CG +LIN  +V+TAAHC  
Sbjct: 1   CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGV 60

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score = 68.3 bits (168), Expect = 6e-15
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG+     Q+P++A +  + R +CG  LI+  +V+TAA C  
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQ 44

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score = 68.4 bits (168), Expect = 6e-15
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           I+GG     H  P+M LL   ++  C   LI   +VLTAAHC 
Sbjct: 1   IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCN 43

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score = 68.4 bits (168), Expect = 6e-15
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK--RFYCGATLINNLYVLTAAHCV 159
           +VGG    ++++P++  L        +C   LIN  +VLTAAHC 
Sbjct: 1   VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCD 45

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score = 68.3 bits (168), Expect = 7e-15
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCV 159
           I+ G    +H  PW A L+ +  + YCGA L++  ++LTAAHC 
Sbjct: 1   IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCR 44

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score = 69.0 bits (169), Expect = 7e-15
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 99  DLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAH 157
           D ++C P               +   +   PW   L   + + +CG  +I   +VLT A 
Sbjct: 37  DHKQCVPHDQC--ACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAK 94

Query: 158 CVHQ 161
           C   
Sbjct: 95  CSLL 98

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score = 68.4 bits (168), Expect = 7e-15
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           I+GG  +    +PW+A + Y    +C  +L++  +V++AAHC  
Sbjct: 1   IIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAHCFS 43

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score = 68.4 bits (168), Expect = 8e-15
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRF-YCGATLINNLYVLTAAHCVH 160
           +VGG      ++PW   L    +   CGA+LI+  ++++AAHC  
Sbjct: 1   VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYI 45

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score = 67.9 bits (167), Expect = 9e-15
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           IVGG     +  P    L      +CG +L+N  +V++AAHC 
Sbjct: 1   IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCY 42

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 103 CGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRF-YCGATLINNLYVLTAAHCVHQ 161
           CG           R+VGG V + H +PW   L  +    +CG TLI+  +VLTAAHC+ +
Sbjct: 4   CGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEK 63

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score = 69.2 bits (169), Expect = 1e-14
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 101 EKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMY----KKRFYCGATLINNLYVLTAA 156
           E      CG           + T  H+ PW A +      K    C   +++  +VLTAA
Sbjct: 204 ESQSLSLCG-----MVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAA 258

Query: 157 HCVH 160
           HC  
Sbjct: 259 HCFT 262

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score = 67.5 bits (166), Expect = 1e-14
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG     +  P+   L      +CG +LIN+ +V++AAHC  
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK 43

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           I+GGQ   +  +PW            G  L+ + ++LTAAH ++ 
Sbjct: 1   IIGGQKAKMGNFPWQVFTNI--HGRGGGALLGDRWILTAAHTLYP 43

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 1/61 (1%)

Query: 102 KCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVH 160
                              +   +   PW   L   + + +CG  +I   +VLT A C  
Sbjct: 79  HKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSL 138

Query: 161 Q 161
            
Sbjct: 139 L 139

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score = 66.8 bits (164), Expect = 2e-14
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
           IVGG  +   ++PW   L      +R  CG ++I N ++LTAAHC +
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY 47

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score = 66.9 bits (164), Expect = 3e-14
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 117 IVGGQVTYVHQYPWMALLMYK------KRFYCGATLINNLYVLTAAHCVH 160
           I GG    +  +PW A +  K      +RF CG  LI++ ++L+AAHC  
Sbjct: 1   IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQ 50

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score = 66.8 bits (164), Expect = 3e-14
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 108 CG----AVNKKTRIVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCV 159
           CG      N   R+VGG+    H +PW   L Y +    R  CG TLI   +VLTAAHC+
Sbjct: 1   CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI 60

Query: 160 H 160
            
Sbjct: 61  S 61

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score = 66.1 bits (162), Expect = 6e-14
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKR-----FYCGATLINNLYVLTAAHCVH 160
           I+GG+ T +   PW A +  + R     + CG +LI+  +V++A HC  
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFI 49

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score = 65.7 bits (161), Expect = 6e-14
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 119 GGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
           GG+ T + Q PW   +      +   CG  +++  +VLTAAHCV 
Sbjct: 2   GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVF 46

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           I GG      Q+PW   + Y+    CG +L++  +VL+AAHC  
Sbjct: 1   ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFP 44

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ... Length = 131

 Score = 62.6 bits (153), Expect = 2e-13
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCV 159
           IV G+      +PW   L  K    +CG +LIN  +V+TAAHC 
Sbjct: 1   IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCG 44

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score = 63.8 bits (156), Expect = 3e-13
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 159
           IVGG     +  PW   ++    + CG  LI+  +V+TAAHC 
Sbjct: 1   IVGGYKCEKNSQPWQVAVIN--EYLCGGVLIDPSWVITAAHCY 41

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score = 63.7 bits (156), Expect = 4e-13
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 117 IVGGQVTYVHQYPWMALLMY---KKRFYCGATLINNLYVLTAAHCV 159
           I+GG     H  P+MA LM    K    CG  LI + +VLTAAHC 
Sbjct: 1   IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCW 46

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score = 62.9 bits (154), Expect = 5e-13
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCV 159
           I+GG+ +  H  P+MA L  +    +  CG  L+   +VLTAAHC 
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCW 46

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score = 62.6 bits (153), Expect = 7e-13
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKR---FYCGATLINNLYVLTAAHCVH 160
           IVGG     H  P+MA L  +      +CG TLI+  +VLTAAHC+ 
Sbjct: 1   IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLR 47

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score = 62.5 bits (153), Expect = 8e-13
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCV 159
           I+GG     H  P+MA L++K   K   CG  L+   +VLTAAHC+
Sbjct: 1   IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCL 46

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score = 62.5 bits (153), Expect = 9e-13
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 117 IVGGQVTYVHQYPWMALLMY----KKRFYCGATLINNLYVLTAAHCV 159
           I+GG     H  P+MA L          +CG  LI   +VLTAAHC 
Sbjct: 1   IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCA 47

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score = 62.6 bits (153), Expect = 9e-13
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 160
           +VGG+V   + +PW   L YK        CG +LI   +V+TAAHCV 
Sbjct: 1   VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVD 48

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score = 62.1 bits (152), Expect = 1e-12
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCV 159
           I+GG  +  H  P+MA L        R  CG  LI+  +VLTAAHC 
Sbjct: 1   IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCK 47

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 117 IVGGQVTYVHQYPWMALLMYK------KRFYCGATLINNLYVLTAAHCVH 160
           I+GGQ      +PWM  L         +   CG +L+N+ ++LTAAHC  
Sbjct: 1   IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFR 50

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score = 61.8 bits (151), Expect = 2e-12
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 160
           +VGG     + +P    L Y+        CG TLI   +V+TAAHCV 
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVD 48

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCV 159
           I+GG     H  P+MA   + K    + +CG  L+ + +VLTAAHC 
Sbjct: 1   IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCK 47

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFY---CGATLINNLYVLTAAHCVH 160
           IVGGQ     ++PW   L  + R++   CG +LI+  +VLTAAHCV 
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVG 47

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 160
           +VGG+    + +PW   L Y      R  CG TL++  +VLTAAHC+ 
Sbjct: 1   VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCIS 48

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score = 60.7 bits (148), Expect = 4e-12
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           +V G  T      WM  L Y+ +  CG +LI   +VLTA  C  
Sbjct: 1   VVNGIPT-RTNIGWMVSLRYRNKHICGGSLIKESWVLTARQCFP 43

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score = 58.2 bits (140), Expect = 1e-10
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 9/59 (15%)

Query: 106 CTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 160
             CG           + T  H+ PW A +   +       C   +++  +VLTAAHC  
Sbjct: 451 SLCG-----MVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT 504

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score = 57.4 bits (138), Expect = 2e-10
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 94  PVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALL-MYKKRFYCGATLINNLYV 152
           P        CG           R+VGG V + H +PW   L       +CG TLI+  +V
Sbjct: 539 PQCAAPSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWV 598

Query: 153 LTAAHCVH 160
           LTAAHC+ 
Sbjct: 599 LTAAHCLE 606

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score = 54.9 bits (133), Expect = 5e-10
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 117 IVGGQVTYVHQYPWMA-LLMYKKRFYCGATLINNLYVLTAAHCVH 160
           +VGG        PW   L   + + +CG +L+   ++LTA  C  
Sbjct: 1   VVGGHP---GNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFS 42

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score = 52.2 bits (126), Expect = 5e-09
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 120 GQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 160
           G+    + + W   L Y+K       CG +LI   +V+TA HC+ 
Sbjct: 2   GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIS 46

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Length = 215

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 117 IVGG-----QVTYVHQYPWMALL-MYKKRFYCGATLINNLYVLTAAHCVH 160
           +V G     +V      P+ ++  +      C  TLI    +LT  HCV+
Sbjct: 1   VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVY 50

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica} Length = 218

 Score = 40.1 bits (93), Expect = 9e-05
 Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 8/42 (19%)

Query: 127 QYPWMA-----LLMYKKRFYCGATLINNLY---VLTAAHCVH 160
                          +  F C A ++ +     V TA HC+H
Sbjct: 3   PADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCLH 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.66
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	99.65
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	99.56
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	99.55
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	99.53
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	99.52
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	99.5
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	99.5
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	99.49
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	99.48
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	99.48
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	99.45
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	99.44
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	99.43
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	99.4
1elv_A	333	Complement C1S component; trypsin-like serin prote	99.4
1md8_A	329	C1R complement serine protease; innate immunity, a	99.38
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	99.35
1gpz_A	399	Complement C1R component; hydrolase, activation, i	99.35
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	99.34
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	99.31
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	99.31
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.31
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	99.28
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	99.19
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	99.12
3hrz_D	741	Complement factor B; serine protease, glycosilated	99.01
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	98.6
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	98.53
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	98.27
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	97.89
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	97.8
3k6y_A	237	Serine protease, possible membrane-associated seri	96.69
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	95.71
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	95.39
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	94.82
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	94.81
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	93.24
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	93.0
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	91.95
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	90.67
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	85.35

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A

Probab=99.66  E-value=1.4e-16  Score=108.13  Aligned_cols=44  Identities=39%  Similarity=0.755  Sum_probs=41.8

Q ss_pred             eeCCEEcCCCCCCeEEEEEeCCeEeeEEEEeeCCeeeecccccC
Q psy8663         117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       117 IvgG~~a~~ge~PW~vsL~~~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      |+||..+..++|||+++|...+.++|||+||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGslIs~~~VLTAAHC~~   44 (80)
T 2pka_A            1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCKN   44 (80)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCCCCcEEEEEECCceEEEEEEEcCCEEEECHHHCC
Confidence            68999999999999999998888999999999999999999985

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=99.65  E-value=1.2e-16  Score=128.98  Aligned_cols=56  Identities=29%  Similarity=0.779  Sum_probs=45.3

Q ss_pred             CCccCCCC--CCCceeCCEEcCCCCCCeEEEEEeCC-----eEeeEEEEeeCCeeeecccccC
Q psy8663         105 PCTCGAVN--KKTRIVGGQVTYVHQYPWMALLMYKK-----RFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       105 ~~~CG~~~--~~~rIvgG~~a~~ge~PW~vsL~~~~-----~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ...||.+.  ...||+||..+..++|||+|+|.+..     .|+||||||+++||||||||+.
T Consensus        10 ~~~CG~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGsLIs~~~VLTAAHCv~   72 (276)
T 2vnt_A           10 KFQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFI   72 (276)
T ss_dssp             CCCTTCCCC-----CCSSEECCGGGSTTEEEEEEECSSSCEEEEEEEEEEETTEEEECGGGTT
T ss_pred             CCCCCCcCCCCCCcEECCEECCCCCCCcEEEEEEecCCCcceeEEEEEEeeCCEEEECccccc
Confidence            34688654  35799999999999999999998732     4799999999999999999984

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=99.56  E-value=2.7e-15  Score=121.94  Aligned_cols=56  Identities=45%  Similarity=0.931  Sum_probs=48.9

Q ss_pred             CCccCCCCCCCceeCCEEcCCCCCCeEEEEEeCC-----eEeeEEEEeeCCeeeecccccC
Q psy8663         105 PCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK-----RFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       105 ~~~CG~~~~~~rIvgG~~a~~ge~PW~vsL~~~~-----~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      +..||......||+||..+..++|||+|+|.+..     .++|||+||+++||||||||+.
T Consensus        11 ~~~CG~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~   71 (278)
T 2olg_A           11 PNDCGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVA   71 (278)
T ss_dssp             CSSCSCCCCCCCSCCSSBCCTTSSTTEEEEEEECTTCCEEEEEEEEECSSSEEEECGGGTS
T ss_pred             hhHhCCCCCCCceECCEECCCCCCCceEEEEEecCCCCcceeEEEEEEeCCEEEEhHHhCC
Confidence            3478876667899999999999999999998732     6899999999999999999985

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...

Probab=99.55  E-value=4.5e-15  Score=108.94  Aligned_cols=44  Identities=39%  Similarity=0.706  Sum_probs=41.0

Q ss_pred             eeCCEEcCCCCCCeEEEEEe-CCeEeeEEEEeeCCeeeecccccC
Q psy8663         117 IVGGQVTYVHQYPWMALLMY-KKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       117 IvgG~~a~~ge~PW~vsL~~-~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      |+||..+..++|||+++|.. .+.++|||+||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGsLIs~~~VLTAAHC~~   45 (131)
T 1yph_C            1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGV   45 (131)
T ss_dssp             CBTCEECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCCcCcEEEEEeCCCCEEEEEEEeeCCEEEECHHHCC
Confidence            68999999999999999987 567899999999999999999985

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=99.53  E-value=9.6e-16  Score=130.27  Aligned_cols=59  Identities=32%  Similarity=0.673  Sum_probs=49.2

Q ss_pred             CCCCCCccCCCC----CCCceeCCEEcCCCCCCeEEEEEeCCeEeeEEEEeeCCeeeecccccC
Q psy8663         101 EKCGPCTCGAVN----KKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       101 ~~C~~~~CG~~~----~~~rIvgG~~a~~ge~PW~vsL~~~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ..|.+ .||...    ...||+||..|..++|||+|+|...+.++|||+||+++||||||||+.
T Consensus        84 p~C~p-~CG~p~~~~~~~~RIvGG~~a~~g~~Pw~v~l~~~~~~~CGGsLIs~~~VLTAAHCv~  146 (347)
T 4f4o_C           84 PECEA-VCGKPKNPVDQVQRIMGGSLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAKNLR  146 (347)
T ss_dssp             CEEEE-CCSCCSSCC-----CCSCCBCCSCCCTTCEEEECTTCCEEECCBCSSSEEEECHHHHT
T ss_pred             CCccC-CCCCCCCCCCCCCeEECCEECCCCCCCcEEEEEeCCCEEEEEEEEcCCEEEeCccccc
Confidence            35654 688653    357999999999999999999999888999999999999999999984

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=99.52  E-value=1.5e-14  Score=115.80  Aligned_cols=47  Identities=45%  Similarity=0.847  Sum_probs=43.2

Q ss_pred             CCceeCCEEcCCCCCCeEEEEEeC-CeEeeEEEEeeCCeeeecccccC
Q psy8663         114 KTRIVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       114 ~~rIvgG~~a~~ge~PW~vsL~~~-~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ..||+||..+..++|||+|+|... +.++|||+||+++||||||||+.
T Consensus        15 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~CgGsLIs~~~VLTAAHC~~   62 (247)
T 1ddj_A           15 PGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLE   62 (247)
T ss_dssp             CTTCTTCEECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGGT
T ss_pred             CCCcCCCEECCCCCCCcEEEEEcCCCCeEEEEEEeeCCEEEEcHHHcC
Confidence            359999999999999999999873 67899999999999999999985

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=99.50  E-value=2.6e-14  Score=116.70  Aligned_cols=53  Identities=32%  Similarity=0.797  Sum_probs=44.3

Q ss_pred             ccCCCCC-----CCceeCCEEcCCCCCCeEEEEEeCCeEeeEEEEeeCCeeeecccccC
Q psy8663         107 TCGAVNK-----KTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       107 ~CG~~~~-----~~rIvgG~~a~~ge~PW~vsL~~~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      .||.+..     ..||+||..+..++|||+++|... .++|||+||+++||||||||+.
T Consensus        21 ~CG~~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~-~~~CgGsLIs~~~VLTAAHC~~   78 (283)
T 1yc0_A           21 ACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAIYIG-DSFCAGSLVHTCWVVSAAHCFS   78 (283)
T ss_dssp             CCSCCSCC-------CBSCEECCTTSSTTEEEEEET-TEEEEEEEEETTEEEECGGGGT
T ss_pred             CcCCcccccccCcCceECCeECCCCCCCeEEEEEcC-CcEEEEEEeeCCEEEECHHHcC
Confidence            4665542     259999999999999999999876 6899999999999999999985

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=99.50  E-value=3.2e-14  Score=113.98  Aligned_cols=47  Identities=38%  Similarity=0.690  Sum_probs=41.3

Q ss_pred             CCceeCCEEcCCCCCCeEEEEEe-CCeEeeEEEEeeCCeeeecccccC
Q psy8663         114 KTRIVGGQVTYVHQYPWMALLMY-KKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       114 ~~rIvgG~~a~~ge~PW~vsL~~-~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ..||+||..+..++|||+++|.. .+.++|||+||+++||||||||+.
T Consensus        13 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~   60 (245)
T 1t8o_A           13 LSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGV   60 (245)
T ss_dssp             ---CBTCEECCTTSSTTEEEEECTTCCEEEEEEEEETTEEEECGGGCC
T ss_pred             CCceECCEECCCCCCCceEEEEcCCCCeEEEEEEeeCCEEEEcHHhCc
Confidence            35999999999999999999987 467899999999999999999985

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=99.48  E-value=3.5e-14  Score=116.41  Aligned_cols=46  Identities=43%  Similarity=0.832  Sum_probs=40.5

Q ss_pred             CCceeCCEEcCCCCCCeEEEEEeC--CeEeeEEEEeeCCeeeeccccc
Q psy8663         114 KTRIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV  159 (161)
Q Consensus       114 ~~rIvgG~~a~~ge~PW~vsL~~~--~~~~CGGsLIs~~~VLTAAHC~  159 (161)
                      ..||+||..+..++|||+|+|...  +.++|||+||+++||||||||+
T Consensus        28 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGsLIs~~~VLTAAHC~   75 (289)
T 2bdy_A           28 DGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL   75 (289)
T ss_dssp             ---CBSCEECCTTSCTTEEEEEETTTTEEEEEEEECSSSEEEECGGGT
T ss_pred             CCeEECCEECCCCCCCCeEEEEECCCCCEEEEEEEecCCEEEEcHHhc
Confidence            469999999999999999999764  5789999999999999999998

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=99.48  E-value=3.3e-14  Score=121.22  Aligned_cols=56  Identities=41%  Similarity=0.839  Sum_probs=47.7

Q ss_pred             CCCCCccCCCC-CCCceeCCEEcCCCCCCeEEEEEeCCeEeeEEEEeeCCeeeeccccc
Q psy8663         102 KCGPCTCGAVN-KKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV  159 (161)
Q Consensus       102 ~C~~~~CG~~~-~~~rIvgG~~a~~ge~PW~vsL~~~~~~~CGGsLIs~~~VLTAAHC~  159 (161)
                      .|.  .||.+. ...||+||..+..++|||+|+|.+.+.++|||+||+++||||||||+
T Consensus       104 ~c~--~Cg~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHCv  160 (372)
T 1z8g_A          104 ICQ--DCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCF  160 (372)
T ss_dssp             EEC--CCSCCCCC---CBSCEECCTTSSTTEEEEEETTEEEEEEEESSSSEEEECGGGC
T ss_pred             ecc--ccCCcCCCCCceECCEECCCCCCCcEEEEEeCCceEEEEEEecCCEEEEChhhc
Confidence            454  578653 45799999999999999999999988999999999999999999998

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=99.45  E-value=5.5e-14  Score=112.77  Aligned_cols=47  Identities=47%  Similarity=0.827  Sum_probs=42.3

Q ss_pred             CCceeCCEEcCCCCCCeEEEEEeC----CeEeeEEEEeeCCeeeecccccC
Q psy8663         114 KTRIVGGQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       114 ~~rIvgG~~a~~ge~PW~vsL~~~----~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ..||+||..+..++|||+++|.+.    ..++|||+||+++||||||||+.
T Consensus        11 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~   61 (251)
T 1pyt_D           11 SARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCIS   61 (251)
T ss_dssp             SSSCCSSCCCCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCC
T ss_pred             CCccCCCEECCCCCCCceEEEEEEcCCCcceEEEeEEecCCEEEECHHHhC
Confidence            469999999999999999999752    35799999999999999999985

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=99.44  E-value=7.3e-14  Score=121.07  Aligned_cols=46  Identities=43%  Similarity=0.832  Sum_probs=42.8

Q ss_pred             CCceeCCEEcCCCCCCeEEEEEeC--CeEeeEEEEeeCCeeeeccccc
Q psy8663         114 KTRIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV  159 (161)
Q Consensus       114 ~~rIvgG~~a~~ge~PW~vsL~~~--~~~~CGGsLIs~~~VLTAAHC~  159 (161)
                      ..||+||..+..++|||+|+|+..  +.++|||+||+++|||||||||
T Consensus       163 ~~RIvgG~~a~~g~~Pw~v~l~~~~~~~~~CGGsLIs~~~VLTAAHCv  210 (424)
T 3nxp_A          163 DGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL  210 (424)
T ss_dssp             SSCCCCCEECCTTSCTTEEEEEETTTTEEEEEEEESSSSEEEECHHHH
T ss_pred             CCeeECCEECCCCCCCCEEEEeecCCCCccceeEEEcCCEEEEhHHhc
Confidence            469999999999999999999874  5789999999999999999998

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=99.43  E-value=1.1e-13  Score=119.90  Aligned_cols=53  Identities=47%  Similarity=0.932  Sum_probs=46.7

Q ss_pred             ccCCCCCCCceeCCEEcCCCCCCeEEEEEeC--C--eEeeEEEEeeCCeeeecccccC
Q psy8663         107 TCGAVNKKTRIVGGQVTYVHQYPWMALLMYK--K--RFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       107 ~CG~~~~~~rIvgG~~a~~ge~PW~vsL~~~--~--~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      .|| .....||+||..+..++|||+|+|.+.  +  .++|||+||+++||||||||+.
T Consensus       110 ~CG-~~~~~rIvgG~~a~~~e~Pw~v~L~~~~~g~~~~~CGGsLIs~~~VLTAAHCv~  166 (408)
T 2xxl_A          110 DCG-NFLSQRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVH  166 (408)
T ss_dssp             CCS-CCCCCCCCSSCBCCTTSSTTEEEEEEECSSSEEEEEEEEEEETTEEEECGGGTT
T ss_pred             ccC-CCCCCceECCEECCCCCCCcEEEEEeecCCceeEEEEEEEEECCEEEEcHHhcC
Confidence            577 445689999999999999999999872  2  6899999999999999999985

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=99.40  E-value=1.4e-13  Score=118.76  Aligned_cols=56  Identities=36%  Similarity=0.754  Sum_probs=47.1

Q ss_pred             CCccCCCCC---CCceeCC-EEcCCCCCCeEEEEEeC--------CeEeeEEEEeeCCeeeecccccC
Q psy8663         105 PCTCGAVNK---KTRIVGG-QVTYVHQYPWMALLMYK--------KRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       105 ~~~CG~~~~---~~rIvgG-~~a~~ge~PW~vsL~~~--------~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      +..||.+..   ..||+|| ..+..++|||+|+|.+.        ..++|||+||+++||||||||+.
T Consensus       115 ~~~CG~~~~~~~~~rIvgG~~~a~~~e~PW~v~l~~~~~~~~~~~~~~~CGGsLIs~~~VLTAAHCv~  182 (394)
T 2b9l_A          115 PSFCGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVN  182 (394)
T ss_dssp             CCCTTBCCTTCSSCEEESCSSBCCTTSSTTEEEEEECC------CCSEEEEEEEEETTEEEECHHHHG
T ss_pred             CCCCCCCCCCCCCceeeCCccccCCCCCCcEEEEeeccccccccccceEeeEEEEeCCEEEeccceec
Confidence            346886542   3599999 89999999999999874        25899999999999999999984

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=99.40  E-value=1.3e-13  Score=115.24  Aligned_cols=56  Identities=41%  Similarity=0.830  Sum_probs=44.6

Q ss_pred             CCCCCCccCCCC----CCCceeCCEEcCCCCCCeEEEEEeCCeEeeEEEEeeCCeeeecccccC
Q psy8663         101 EKCGPCTCGAVN----KKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       101 ~~C~~~~CG~~~----~~~rIvgG~~a~~ge~PW~vsL~~~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ..|.+ .||...    ...||+||..+..++|||+|+|..   ++|||+||+++||||||||+.
T Consensus        64 ~~c~~-~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~---~~CgGsLIs~~~VLTAAHC~~  123 (333)
T 1elv_A           64 PKCVP-VCGVPREPFEEKQRIIGGSDADIKNFPWQVFFDN---PWAGGALINEYWVLTAAHVVE  123 (333)
T ss_dssp             CCEEE-CCSCCSSCC-----CBTCEECCGGGSTTEEEEET---TEEEEEEEETTEEEECHHHHT
T ss_pred             ccccC-CcCCCCCcccccceeecCcccCCCCcCeEEEecC---CceeEEEecCCEEEehhheeC
Confidence            45654 688754    246999999999999999999942   379999999999999999985

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=99.38  E-value=2.8e-13  Score=113.74  Aligned_cols=56  Identities=32%  Similarity=0.682  Sum_probs=45.2

Q ss_pred             CCCCCccCCCC----CCCceeCCEEcCCCCCCeEEEEEeCCeEeeEEEEeeCCeeeecccccC
Q psy8663         102 KCGPCTCGAVN----KKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       102 ~C~~~~CG~~~----~~~rIvgG~~a~~ge~PW~vsL~~~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      .|.+ .||...    ...||+||..+..++|||+|++...  +.|||+||+++||||||||+.
T Consensus        72 ~c~~-~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~--~~CgGsLIs~~~VLTAAHCv~  131 (329)
T 1md8_A           72 RCLP-VCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIH--GRGGGALLGDRWILTAAHTLY  131 (329)
T ss_dssp             CEEE-CCSCCSSCCCCC--CBSCCBCCTTSCTTEEEEESS--SEEEEEEETTTEEEECGGGTS
T ss_pred             CCCC-CCCCCCCcccccccccCCEECCCCCCCCeEeeccC--CCcceEEecCCEEEecCCEEE
Confidence            4543 588643    3579999999999999999999753  469999999999999999985

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=99.35  E-value=3.6e-13  Score=115.07  Aligned_cols=57  Identities=33%  Similarity=0.609  Sum_probs=48.3

Q ss_pred             CCCCCCccCCCC--CCCceeCCEEcCCCCCCeEEEEEeCCeEeeEEEEeeCCeeeecccccC
Q psy8663         101 EKCGPCTCGAVN--KKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       101 ~~C~~~~CG~~~--~~~rIvgG~~a~~ge~PW~vsL~~~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ..|.+ .||...  ...||+||..+..++|||+|+|..  .++|||+||+++||||||||+.
T Consensus       145 p~C~~-~CG~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~--~~~CgGsLIs~~~VLTAAHC~~  203 (403)
T 1zjk_A          145 PVCEP-VCGLSARTTGGQIYGGQKAKPGDFPWQVLILG--GTTAAGALLYDNWVLTAAHAVY  203 (403)
T ss_dssp             CEEEE-CCCCCSSCCSCCCSSCEECCTTSSTTEEEEEE--SCCEEEEEETTTEEEECHHHHG
T ss_pred             CCCCC-CCCCCCCCCCccccCCcCCCCCCcCCEeEecc--CCceEEEEecCCEEEEcHHhCC
Confidence            34543 688654  247999999999999999999987  4689999999999999999984

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=99.35  E-value=8.6e-13  Score=112.30  Aligned_cols=57  Identities=30%  Similarity=0.649  Sum_probs=47.1

Q ss_pred             CCCCCCccCCCC----CCCceeCCEEcCCCCCCeEEEEEeCCeEeeEEEEeeCCeeeecccccC
Q psy8663         101 EKCGPCTCGAVN----KKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       101 ~~C~~~~CG~~~----~~~rIvgG~~a~~ge~PW~vsL~~~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ..|.+ .||...    ...||+||..+..++|||+|++...  +.|||+||+++||||||||+.
T Consensus       139 p~C~~-~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~--~~CgGsLIs~~~VLTAAHC~~  199 (399)
T 1gpz_A          139 PRCLP-VCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIH--GRGGGALLGDRWILTAAHTLY  199 (399)
T ss_dssp             CEEEE-CCSCCSSCCCSSCCCCSCEECCTTSSTTEEEEESS--SEEEEEEETTTEEEECGGGTS
T ss_pred             CCccC-CCCCcCCcccCCCEEECCEECCCCCCCCEEEECCC--CCeEEEEeCCCEEEeChhccc
Confidence            34543 588653    2579999999999999999998654  369999999999999999985

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=99.34  E-value=7.1e-13  Score=120.29  Aligned_cols=53  Identities=40%  Similarity=0.809  Sum_probs=47.4

Q ss_pred             ccCCCCCCCceeCCEEcCCCCCCeEEEEEeC---CeEeeEEEEeeCCeeeecccccC
Q psy8663         107 TCGAVNKKTRIVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       107 ~CG~~~~~~rIvgG~~a~~ge~PW~vsL~~~---~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      .||.. ...||+||..+..++|||+|+|...   +.++|||+||+++||||||||+.
T Consensus       379 ~Cg~~-~~~rIvgG~~a~~~~~Pw~v~L~~~~~~~~~~CgGsLIs~~~VLTAAHC~~  434 (625)
T 2f83_A          379 ECTTK-IKPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY  434 (625)
T ss_dssp             SSCSC-CCSCCCSSSSCCTTSSTTEEEEEECSSSSEEEEEEEECSSSEEEECGGGGS
T ss_pred             ccCCC-CCCceECCEECCCCCCCeEEEEEEecCCCcEEEEEEEECCCEEEEcHHhCC
Confidence            57754 4689999999999999999999875   57899999999999999999985

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=99.31  E-value=1.7e-12  Score=121.08  Aligned_cols=54  Identities=43%  Similarity=0.829  Sum_probs=47.4

Q ss_pred             ccCCCCC-----CCceeCCEEcCCCCCCeEEEEEeC-CeEeeEEEEeeCCeeeecccccC
Q psy8663         107 TCGAVNK-----KTRIVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       107 ~CG~~~~-----~~rIvgG~~a~~ge~PW~vsL~~~-~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      .||....     ..||+||..+..++|||+|+|... +.++|||+||+++|||||||||.
T Consensus       547 ~CG~~~~~~~~~~~RIvGG~~a~~~~~PW~VsL~~~~~~~~CGGSLIs~~wVLTAAHCv~  606 (791)
T 4dur_A          547 DCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLE  606 (791)
T ss_dssp             CTTCCSSCCCCCCTTCTTCEECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGGS
T ss_pred             CcCCcccccccCCCceECCEECCCCCCCeEEEEEecCCCeEEEEEEEeCCEEEECHHHcC
Confidence            5775532     369999999999999999999874 67899999999999999999985

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=99.31  E-value=1.1e-12  Score=107.46  Aligned_cols=50  Identities=28%  Similarity=0.737  Sum_probs=36.3

Q ss_pred             CccCCCCCCCceeCCEEcCCCCCCeEEEEEe-CCeEeeEEEEeeCCeeeecccccC
Q psy8663         106 CTCGAVNKKTRIVGGQVTYVHQYPWMALLMY-KKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       106 ~~CG~~~~~~rIvgG~~a~~ge~PW~vsL~~-~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      +.||.....     |..+..++|||+|+|.. .+.++|||+||+++||||||||+.
T Consensus        47 c~CG~~~~~-----g~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~   97 (283)
T 3f1s_B           47 CACGVLTSE-----KRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSL   97 (283)
T ss_dssp             TCTTCCCC-------------CCTTEEEEECTTSCEEEEEEEEETTEEEECHHHHT
T ss_pred             cccCccccC-----CccccccccCCEEEEEecCCCeeeccEEecCCEEEEcHHhcC
Confidence            368865432     88899999999999987 567899999999999999999984

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.31  E-value=3.1e-13  Score=121.40  Aligned_cols=54  Identities=35%  Similarity=0.791  Sum_probs=35.0

Q ss_pred             ccCCCC----CCCceeCCEEcCCCCCCeEEEEEeCCeEeeEEEEeeCCeeeecccccC
Q psy8663         107 TCGAVN----KKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       107 ~CG~~~----~~~rIvgG~~a~~ge~PW~vsL~~~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      .||...    ...||+||..+..++|||+|+|...+.++|||+||+++||||||||+.
T Consensus       308 ~CG~~~~~~~~~~rIvgG~~a~~g~~Pw~v~l~~~~~~~CGGsLIs~~~VLTAAHCv~  365 (565)
T 2xrc_A          308 SCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLR  365 (565)
T ss_dssp             CCCC--------------------CCTTBCEEEESSSCCCCCEEEETTEEEECHHHHT
T ss_pred             ccCCCCCcccCCCceECCEECCCCCCCcEEEEecCCceeeeEEEEeCCEEEEChhhcc
Confidence            577654    347999999999999999999998878899999999999999999985

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=99.28  E-value=7.4e-13  Score=115.52  Aligned_cols=50  Identities=30%  Similarity=0.575  Sum_probs=39.6

Q ss_pred             CccCCCCCCCceeCCEEcCCCCCCeEEEEEeCCeEeeEEEEeeCCeeeecccccC
Q psy8663         106 CTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       106 ~~CG~~~~~~rIvgG~~a~~ge~PW~vsL~~~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ..||..     .++|..+..++|||+|+|...+.++|||+||+++||||||||+.
T Consensus       218 ~~CG~~-----~~~g~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~  267 (509)
T 2odp_A          218 TICGVG-----NMSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFR  267 (509)
T ss_dssp             CCSSCC-----CCCTTSCHHHHCTTEEEEEC----CEEEEECSSSEEEECGGGC-
T ss_pred             cccCCc-----CCCCCccccCCCCcEEEEEeCCCcEEEEEEEcCCEEEEcHHHcC
Confidence            367743     35788888999999999988778899999999999999999985

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=99.19  E-value=9.5e-12  Score=102.96  Aligned_cols=41  Identities=27%  Similarity=0.624  Sum_probs=37.8

Q ss_pred             CEEcCCCCCCeEEEEEe-CCeEeeEEEEeeCCeeeecccccC
Q psy8663         120 GQVTYVHQYPWMALLMY-KKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       120 G~~a~~ge~PW~vsL~~-~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      |..+..++|||+|+|.. .+.++|||+||+++||||||||+.
T Consensus        97 G~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~  138 (317)
T 3h5c_B           97 KRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSL  138 (317)
T ss_dssp             CSSCCTTCCTTEEEEECSSSCEEEEEEEEETTEEEECHHHHH
T ss_pred             cccCccCCCCcEEEEeccCCceeeeeEEeeCCEEEEChHhcC
Confidence            78899999999999987 577899999999999999999973

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=99.12  E-value=1.8e-11  Score=106.06  Aligned_cols=49  Identities=35%  Similarity=0.602  Sum_probs=38.9

Q ss_pred             ccCCCCCCCceeCCEEcCCCCCCeEEEEEe----CCeEeeEEEEeeCCeeeecccccC
Q psy8663         107 TCGAVNKKTRIVGGQVTYVHQYPWMALLMY----KKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       107 ~CG~~~~~~rIvgG~~a~~ge~PW~vsL~~----~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      .||....     .+..+..++|||+|+|.+    .+.++|||+||+++||||||||+.
T Consensus       210 ~CG~~~~-----~~~~~~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~  262 (497)
T 1rrk_A          210 LCGMVWE-----HRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT  262 (497)
T ss_dssp             CTTCCCC-----CTTCCHHHHSTTEEEEEECC--CCCEEEEEEECSSSEEEECGGGCC
T ss_pred             CCCCCCC-----CCCCCCccccCcEEEEEEEcCCCCCceeEEEEecCCEEEECHHhCC
Confidence            5775432     134566789999999986    356899999999999999999985

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=99.01  E-value=2.1e-10  Score=103.99  Aligned_cols=51  Identities=31%  Similarity=0.522  Sum_probs=36.2

Q ss_pred             CCccCCCCCCCceeCCEEcCCCCCCeEEEEEeC----CeEeeEEEEeeCCeeeecccccC
Q psy8663         105 PCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       105 ~~~CG~~~~~~rIvgG~~a~~ge~PW~vsL~~~----~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ...||..     ...|..+..++|||++.+...    +.++|||+||+++||||||||+.
T Consensus       450 ~~~CG~~-----~~~~~~~~~~~~Pw~~~v~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~  504 (741)
T 3hrz_D          450 LSLCGMV-----WEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT  504 (741)
T ss_dssp             TTSTTCC-----CCC---CCTTTCTTEEEEEECCCC-----EEEEECSSSEEEECGGGCC
T ss_pred             ccccccc-----cccCCcccccCcCCeEEEEEEeCCCCCCEEEEEEecCCEEEEchhhcc
Confidence            3356643     345788899999999888773    56899999999999999999985

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=98.60  E-value=1.2e-08  Score=81.19  Aligned_cols=38  Identities=24%  Similarity=0.292  Sum_probs=31.6

Q ss_pred             cCCCCCCeEEEE--EeCCeEeeEEEEeeCCeeeecccccC
Q psy8663         123 TYVHQYPWMALL--MYKKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       123 a~~ge~PW~vsL--~~~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      +..++|||++.+  ...+.++|+|+||+++||||||||+.
T Consensus        36 a~~~~~p~~~~v~i~~~~~~~c~G~lI~~~~VLTAaHcv~   75 (242)
T 1agj_A           36 KDRQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAK   75 (242)
T ss_dssp             TGGGSTTGGGEEEEEETTTEEEEEEECSSSEEEECHHHHG
T ss_pred             ccccccccceEEEEEECCCccEEEEEEeCCEEEEChhhcc
Confidence            556789998544  44567899999999999999999984

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=98.53  E-value=2.6e-08  Score=79.87  Aligned_cols=38  Identities=18%  Similarity=0.180  Sum_probs=31.4

Q ss_pred             cCCCCCCeEEEE--EeCCeEeeEEEEeeCCeeeecccccC
Q psy8663         123 TYVHQYPWMALL--MYKKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       123 a~~ge~PW~vsL--~~~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      +..++|||++.+  ...+.++|+|+||+++||||||||+.
T Consensus        29 ~~~~~~P~~~~~~i~~~~~~~c~G~lI~~~~VLTAaHcv~   68 (246)
T 1qtf_A           29 TDNARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAR   68 (246)
T ss_dssp             SCCSSTTGGGEEEEEETTTEEEEEEEEETTEEEECHHHHG
T ss_pred             hhcCcCchhcEEEEEECCCceEEEEEEECCEEEECHHhCC
Confidence            445689999653  34667899999999999999999984

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=98.27  E-value=6.9e-07  Score=73.46  Aligned_cols=29  Identities=34%  Similarity=0.612  Sum_probs=24.8

Q ss_pred             EEEEeCCeEeeEEEEeeC------CeeeecccccC
Q psy8663         132 ALLMYKKRFYCGATLINN------LYVLTAAHCVH  160 (161)
Q Consensus       132 vsL~~~~~~~CGGsLIs~------~~VLTAAHC~~  160 (161)
                      +.|...+.|+|||+||++      +||||||||+.
T Consensus        26 ~rl~~~g~~~CGGSLI~~~~~~~~~~VLTAAHCv~   60 (268)
T 1arb_A           26 GAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGM   60 (268)
T ss_dssp             EEEEETTEEEEEEEEBCCTTCCCCCEEEEEGGGSC
T ss_pred             EEEEeCCccEEeEEEEcCCCCCCCCEEEEcHHhCC
Confidence            455567889999999998      59999999984

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=97.89  E-value=3.3e-06  Score=68.67  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=21.0

Q ss_pred             CeEeeEEEEeeCCeeeecccccC
Q psy8663         138 KRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       138 ~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      +.++|+|+||+++||||||||+.
T Consensus        32 g~~~CgG~lI~~~~VLTAAHCv~   54 (268)
T 1wcz_A           32 GTFIASGVVVGKDTLLTNKHVVD   54 (268)
T ss_dssp             CEEEEEEEECSSSEEEECHHHHG
T ss_pred             CCEEEEEEEEECCEEEEChhhCC
Confidence            45789999999999999999984

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=97.80  E-value=5.4e-06  Score=67.58  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.8

Q ss_pred             CeEeeEEEEeeCCeeeecccccC
Q psy8663         138 KRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       138 ~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      +.++|+|+||+++||||||||+.
T Consensus        32 ~~~~C~G~lI~~~~VLTAAHCv~   54 (274)
T 2o8l_A           32 GTFIASGVVVGKDTLLTNKHVVD   54 (274)
T ss_dssp             EEEEEEEEEEETTEEEECHHHHH
T ss_pred             CCEEEEEEEEECCEEEEChhhCc
Confidence            35789999999999999999984

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=96.69  E-value=0.0013  Score=51.80  Aligned_cols=33  Identities=24%  Similarity=0.137  Sum_probs=25.4

Q ss_pred             CCeEEEEEeC-----CeEeeEEEEeeCCeeeecccccC
Q psy8663         128 YPWMALLMYK-----KRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       128 ~PW~vsL~~~-----~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      .|..|.+...     ....|.|+||+++||||+|||+.
T Consensus        41 ~~svV~I~~~~~~~~~~~~GsG~iI~~~~VlTaaH~v~   78 (237)
T 3k6y_A           41 EPSVVKIRSLAPRCQKVLEGTGFVISPDRVMTNAHVVA   78 (237)
T ss_dssp             GGGEEEEEEEEGGGTEEEEEEEEEEETTEEEECGGGTT
T ss_pred             cCCEEEEEEEecCCCcceeEEEEEEECCEEEECHHHcC
Confidence            4556666542     24579999999999999999985

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=95.71  E-value=0.0043  Score=49.60  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=19.5

Q ss_pred             eEeeEEEEeeCC-eeeecccccC
Q psy8663         139 RFYCGATLINNL-YVLTAAHCVH  160 (161)
Q Consensus       139 ~~~CGGsLIs~~-~VLTAAHC~~  160 (161)
                      .+.|+|.||+++ ||||+|||+.
T Consensus        55 ~~~gsG~iI~~~g~ILTnaHvv~   77 (239)
T 1l1j_A           55 ASLGSGFIFDPEGYILTNYHVVG   77 (239)
T ss_dssp             EEEEEEEEEETTTEEEEEHHHHS
T ss_pred             CceEEEEEEeCCCEEEEChHHhC
Confidence            467999999985 9999999985

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=95.39  E-value=0.012  Score=46.58  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=18.9

Q ss_pred             EeeEEEEeeCC-eeeecccccC
Q psy8663         140 FYCGATLINNL-YVLTAAHCVH  160 (161)
Q Consensus       140 ~~CGGsLIs~~-~VLTAAHC~~  160 (161)
                      ..+.|++|+++ ||||+|||+.
T Consensus        63 ~~GSG~iI~~~G~VLTaaHvv~   84 (231)
T 3tjo_A           63 ASGSGFIVSEDGLIVTNAHVVT   84 (231)
T ss_dssp             EEEEEEECSTTCEEEEETTTCC
T ss_pred             ceEEEEEEeCCCEEEEchhccc
Confidence            46889999998 9999999985

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=94.82  E-value=0.012  Score=48.75  Aligned_cols=21  Identities=19%  Similarity=0.175  Sum_probs=19.3

Q ss_pred             EeeEEEEeeCC-eeeecccccC
Q psy8663         140 FYCGATLINNL-YVLTAAHCVH  160 (161)
Q Consensus       140 ~~CGGsLIs~~-~VLTAAHC~~  160 (161)
                      ..|+|++|+++ ||||++||+.
T Consensus        47 ~~gsG~iI~~~G~IlT~aHvv~   68 (325)
T 1lcy_A           47 SNGSGFVVAADGLIVTNAHVVA   68 (325)
T ss_dssp             EEEEEEEEETTTEEEECHHHHT
T ss_pred             ccEEEEEEeCCCEEEECHHHcC
Confidence            57999999998 9999999985

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=94.81  E-value=0.0099  Score=49.01  Aligned_cols=22  Identities=18%  Similarity=0.504  Sum_probs=19.7

Q ss_pred             eEeeEEEEeeCC-eeeecccccC
Q psy8663         139 RFYCGATLINNL-YVLTAAHCVH  160 (161)
Q Consensus       139 ~~~CGGsLIs~~-~VLTAAHC~~  160 (161)
                      .+.|+|.+|+++ ||||++||+.
T Consensus        41 ~~~gsG~iI~~~G~IlT~aHvv~   63 (318)
T 1te0_A           41 RTLGSGVIMDQRGYIITNKHVIN   63 (318)
T ss_dssp             EEEEEEEECSTTCEEEEEHHHHT
T ss_pred             CccEEEEEEeCCCEEEECHHHcC
Confidence            467999999987 9999999985

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=93.24  E-value=0.065  Score=44.31  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=18.7

Q ss_pred             EeeEEEEeeCC-eeeecccccC
Q psy8663         140 FYCGATLINNL-YVLTAAHCVH  160 (161)
Q Consensus       140 ~~CGGsLIs~~-~VLTAAHC~~  160 (161)
                      ..+.|++|+++ ||||+|||+.
T Consensus        46 ~~GSG~iI~~~G~ILTaaHvv~   67 (332)
T 3num_A           46 ASGSGFIVSEDGLIVTNAHVVT   67 (332)
T ss_dssp             EEEEEEEEETTTEEEECTTTCC
T ss_pred             eeEEEEEEeCCCEEEEChHHcC
Confidence            45889999998 9999999985

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=93.00  E-value=0.044  Score=43.15  Aligned_cols=21  Identities=14%  Similarity=0.453  Sum_probs=18.7

Q ss_pred             EeeEEEEeeCC-eeeecccccC
Q psy8663         140 FYCGATLINNL-YVLTAAHCVH  160 (161)
Q Consensus       140 ~~CGGsLIs~~-~VLTAAHC~~  160 (161)
                      ..+.|.+|+++ ||||+|||+.
T Consensus        53 ~~GsG~ii~~~G~IlTaaHvv~   74 (237)
T 3lgi_A           53 TLGSGVIMDQRGYIITNKHVIN   74 (237)
T ss_dssp             EEEEEEEEETTTEEEEEHHHHT
T ss_pred             eEEEEEEEeCCCEEEEeeeecC
Confidence            36889999998 9999999985

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=91.95  E-value=0.071  Score=44.47  Aligned_cols=21  Identities=10%  Similarity=0.056  Sum_probs=18.8

Q ss_pred             EeeEEEEeeCC-eeeecccccC
Q psy8663         140 FYCGATLINNL-YVLTAAHCVH  160 (161)
Q Consensus       140 ~~CGGsLIs~~-~VLTAAHC~~  160 (161)
                      ..+.|++|+++ ||||+|||+.
T Consensus        53 g~GSG~iI~~~G~IlT~aHvv~   74 (348)
T 3qo6_A           53 GSGSGFVWDKQGHIVTNYHVIR   74 (348)
T ss_dssp             EEEEEEEEETTTEEEECHHHHT
T ss_pred             ceEEEEEEeCCCEEEECHHHhC
Confidence            46899999998 9999999985

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=90.67  E-value=0.12  Score=41.35  Aligned_cols=21  Identities=33%  Similarity=0.466  Sum_probs=17.6

Q ss_pred             EeeEEEEeeCC--eeeecccccC
Q psy8663         140 FYCGATLINNL--YVLTAAHCVH  160 (161)
Q Consensus       140 ~~CGGsLIs~~--~VLTAAHC~~  160 (161)
                      ..+.|.+|+++  ||||++||+.
T Consensus        63 ~~GSGfiI~~~~G~IlTnaHvv~   85 (245)
T 3sti_A           63 GLGSGVIINASKGYVLTNNHVIN   85 (245)
T ss_dssp             -CCEEEEEETTTTEEEECGGGC-
T ss_pred             ceEEEEEEeCCCCEEEEcHHHhC
Confidence            35889999997  9999999985

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=85.35  E-value=0.4  Score=40.05  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=19.2

Q ss_pred             eEeeEEEEeeCC--eeeecccccC
Q psy8663         139 RFYCGATLINNL--YVLTAAHCVH  160 (161)
Q Consensus       139 ~~~CGGsLIs~~--~VLTAAHC~~  160 (161)
                      ...+.|.+|+++  ||||++||+.
T Consensus        62 ~~~GSGfiI~~~~G~IlTnaHVv~   85 (345)
T 3stj_A           62 EGLGSGVIINASKGYVLTNNHVIN   85 (345)
T ss_dssp             EEEEEEEEEETTTTEEEECHHHHT
T ss_pred             ceeEEEEEEECCCCEEEEChHHhC
Confidence            346899999987  9999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	161
d1mzaa_	240	b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [Ta	3e-18
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	1e-17
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	3e-17
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	4e-17
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	4e-17
d2bz6h1	254	b.47.1.2 (H:16-257) Coagulation factor VIIa {Human	4e-17
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	5e-17
d1ao5a_	237	b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus)	5e-17
d1bioa_	228	b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxI	6e-17
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	9e-17
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	9e-17
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	9e-17
d1eq9a_	222	b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Re	1e-16
d1gdna_	224	b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxyspo	2e-16
d1op0a_	234	b.47.1.2 (A:) Venom serine protease {Hundred-pace	2e-16
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	2e-16
d1a7sa_	225	b.47.1.2 (A:) Heparin binding protein, HBP {Human	2e-16
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	3e-16
g1rtf.1	260	b.47.1.2 (A:,B:) Two-chain tissue plasminogen acti	3e-16
d1rjxb_	247	b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Hum	4e-16
g1gj7.1	256	b.47.1.2 (A:,B:) Urokinase-type plasminogen activa	8e-16
d1fxya_	228	b.47.1.2 (A:) Coagulation factor Xa-trypsin chimer	2e-15
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	2e-15
g1h8d.1	289	b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [T	3e-15
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	3e-15
d1q3xa1	242	b.47.1.2 (A:445-686) Mannan-binding lectin serine	3e-15
d1xx9a_	237	b.47.1.2 (A:) Coagulation factor XI {Human (Homo s	4e-15
d1j16a_	223	b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicu	4e-15
d2qy0b1	240	b.47.1.2 (B:447-686) Complement C1R protease, cata	4e-15
d1hj9a_	223	b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [Tax	5e-15
d1eaxa_	241	b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapien	6e-15
d1tona_	235	b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 1	6e-15
d2fpza1	243	b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sap	9e-15
d1os8a_	223	b.47.1.1 (A:) Trypsin {Streptomyces griseus, strai	9e-15
d1brup_	241	b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9	1e-14
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	1e-14
g1fiw.1	274	b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries)	1e-14
d1m9ua_	241	b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [Tax	2e-14
d1gvkb_	240	b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9	2e-14
d1elta_	236	b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxI	3e-14
d1si5h_	234	b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human	4e-14
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	4e-14
d1fq3a_	227	b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [Ta	1e-13
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	3e-13
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	5e-13
d1elva1	259	b.47.1.2 (A:410-668) Complement C1S protease, cata	6e-13
d1fuja_	221	b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapie	6e-13
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	9e-13
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	1e-12
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	2e-12
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	5e-12
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	5e-12
d1nn6a_	224	b.47.1.2 (A:) Chymase (mast cell protease I) {Huma	6e-12
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	1e-11
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	4e-11
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	6e-11
d1p3ca_	215	b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int	6e-08
d1arba_	263	b.47.1.1 (A:) Achromobacter protease {Achromobacte	9e-05
d2o8la1	216	b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur	1e-04

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (186), Expect = 3e-18
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 116 RIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
            I+GG+    H  P+MA + Y     CG  LI+  +VLTAAHC ++
Sbjct: 2   EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYR 47

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (182), Expect = 1e-17
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG+ T + ++PW   L Y     CG +L++  +VLTAAHC  
Sbjct: 1   IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFP 44

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 73.6 bits (179), Expect = 3e-17
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           I+GG     H  PW   + ++  F CG  L++  +VLTAAHC+ 
Sbjct: 1   IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMS 44

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.5 bits (179), Expect = 4e-17
 Identities = 16/44 (36%), Positives = 29/44 (65%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG  +    +PW+  L +  +  CGA+L++  ++++AAHCV+
Sbjct: 1   IVGGSDSREGAWPWVVALYFDDQQVCGASLVSRDWLVSAAHCVY 44

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (178), Expect = 4e-17
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           +VGG+     Q+PW  +L  K   +CG +++N  +++TAAHCV 
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVE 44

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (179), Expect = 4e-17
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG+V    + PW  LL+      CG TLIN ++V++AAHC  
Sbjct: 1   IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFD 44

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (178), Expect = 5e-17
 Identities = 18/44 (40%), Positives = 23/44 (52%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           I+GG     H  P+M LL   ++  C   LI   +VLTAAHC  
Sbjct: 1   IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNL 44

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.2 bits (178), Expect = 5e-17
 Identities = 17/44 (38%), Positives = 24/44 (54%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           +VGG     +  PW   + Y+K   CG  L++  +VLTAAHC  
Sbjct: 1   VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYV 44

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (177), Expect = 6e-17
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           I+GG+    H  P+MA +       CG  L+   +VL+AAHC+ 
Sbjct: 1   ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLE 44

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (175), Expect = 9e-17
 Identities = 17/45 (37%), Positives = 22/45 (48%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           +V G       +P+ A L       CG  LI+ L+VLTAAHC   
Sbjct: 1   LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKKP 45

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.0 bits (175), Expect = 9e-17
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           I+ G+    H  PW A L   +R  CG  L+ + +VLTAAHC  Q
Sbjct: 1   ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKKQ 45

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

 Score = 71.7 bits (174), Expect = 1e-16
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG+   V +YP+   L       CGA++++N  VLTAAHCV 
Sbjct: 1   IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVD 44

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

 Score = 71.7 bits (174), Expect = 2e-16
 Identities = 17/45 (37%), Positives = 24/45 (53%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           IVGG       +P++  +      +CG +L+N   VLTAAHCV  
Sbjct: 1   IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSG 45

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

 Score = 71.7 bits (174), Expect = 2e-16
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           ++GG    ++++ ++        F+CG TLIN  +V+TAAHC  
Sbjct: 1   VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDS 44

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score = 71.6 bits (174), Expect = 2e-16
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG     + +P  A L     ++CG +LI+  ++LTAAHC+ 
Sbjct: 1   IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMD 44

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (173), Expect = 2e-16
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           IVGG+     Q+P++A +  + R +CG  LI+  +V+TAA C   
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQS 45

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (171), Expect = 3e-16
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           IVGG+    H +P+M  L  +   +CGATLI   +V++AAHCV  
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVAN 45

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 247

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (172), Expect = 4e-16
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 103 CGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVHQ 161
           CG            +VGG V Y H +PW   L  +    +CG TLI+  +VLTAAHC+ +
Sbjct: 4   CGKPQVEPKKCPGAVVGGCVAYPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEK 63

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

 Score = 68.9 bits (167), Expect = 2e-15
 Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVHQ 161
           IVGG      + PW ALL+ ++   +CG T+++  Y+LTAAHC++Q
Sbjct: 1   IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (166), Expect = 2e-15
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMY-KKRFYCGATLINNLYVLTAAHCVHQ 161
           ++ G++T     PW  +L+  KK+  CGA LI+  +VLTAAHC+ +
Sbjct: 1   LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDE 46

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 3e-15
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVHQ 161
           IVGGQ     + PW ALL+ ++   +CG T+++  Y+LTAAHC++Q
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 3e-15
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           I GGQ      +PW  L++          L+ + +VLTAAH V++
Sbjct: 1   IYGGQKAKPGDFPWQVLILG--GTTAAGALLYDNWVLTAAHAVYE 43

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (165), Expect = 4e-15
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 160
           IVGG  +   ++PW   L      +R  CG ++I N ++LTAAHC +
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY 47

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.7 bits (164), Expect = 4e-15
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG     +  P+   L      +CG +LIN+ +V++AAHC  
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK 43

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 4e-15
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           I+GGQ   +  +PW            G  L+ + ++LTAAH ++
Sbjct: 1   IIGGQKAKMGNFPWQVFTNI--HGRGGGALLGDRWILTAAHTLY 42

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 5e-15
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG     +  P+   L      +CG +LIN+ +V++AAHC  
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK 43

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (164), Expect = 6e-15
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCVH 160
           +VGG      ++PW   L    +   CGA+LI+  ++++AAHC  
Sbjct: 1   VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYI 45

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 67.4 bits (163), Expect = 6e-15
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG     +  PW   ++    + CG  LI+  +V+TAAHC  
Sbjct: 1   IVGGYKCEKNSQPWQVAVIN--EYLCGGVLIDPSWVITAAHCYS 42

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 9e-15
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFY---CGATLINNLYVLTAAHCVH 160
           IVGGQ     ++PW   L     ++   CG +LI+  +VLTAAHCV 
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVG 47

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 66.7 bits (161), Expect = 9e-15
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           +VGG      ++P+M  L       CG  L     VLTAAHCV 
Sbjct: 1   VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVS 40

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 66.7 bits (161), Expect = 1e-14
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQ 161
           +VGG+    + +PW   L Y      R  CG TL++  +VLTAAHC+  
Sbjct: 1   VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISS 49

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score = 66.1 bits (160), Expect = 1e-14
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           IVGG     +  P    L      +CG +L+N  +V++AAHC  
Sbjct: 1   IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYK 43

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

 Score = 66.0 bits (159), Expect = 2e-14
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK---RFYCGATLINNLYVLTAAHCVH 160
           ++GG      ++PW      +       CGA+L+++   L+A+HCV 
Sbjct: 1   VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVD 47

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 66.0 bits (159), Expect = 2e-14
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQ 161
           +VGG     + +P    L Y+        CG TLI   +V+TAAHCV +
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDR 49

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Length = 236

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

 Score = 65.6 bits (158), Expect = 3e-14
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQ 161
           +VGG+V   + +PW   L YK        CG +LI   +V+TAAHCV  
Sbjct: 1   VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDS 49

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 4e-14
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
           +V G  T      WM  L Y+ +  CG +LI   +VLTA  C  
Sbjct: 1   VVNGIPTRT-NIGWMVSLRYRNKHICGGSLIKESWVLTARQCFP 43

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score = 65.1 bits (157), Expect = 4e-14
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQ 161
           IVGG    + ++P+              +CGA++ N  Y +TA HCV+ 
Sbjct: 1   IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYG 49

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (154), Expect = 1e-13
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKR---FYCGATLINNLYVLTAAHCVHQ 161
           I+GG     H  P+MA LM   +     CG  LI + +VLTAAHC   
Sbjct: 1   IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIQDDFVLTAAHCWGS 48

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 5e-13
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 108 CGAVNKKTRIVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 160
           CG V +       + T  H+ PW A +   +       C   +++  +VLTAAHC  
Sbjct: 1   CGMVWEH-----RKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT 52

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 6e-13
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 108 CG----AVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 161
           CG       +K RI+GG    +  +PW          + G  LIN  +VLTAAH V  
Sbjct: 1   CGVPREPFEEKQRIIGGSDADIKNFPWQVFF---DNPWAGGALINEYWVLTAAHVVEG 55

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 6e-13
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 117 IVGGQVTYVHQYPWMALLMYKKR---FYCGATLINNLYVLTAAHCVHQ 161
           IVGG     H  P+MA L  +      +CG TLI+  +VLTAAHC+  
Sbjct: 1   IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRD 48

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.3 bits (147), Expect = 9e-13
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 117 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVHQ 161
           I+GG     H  P+MA L++K   K   CG  L+   +VLTAAHC+  
Sbjct: 1   IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGS 48

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 1e-12
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK---RFYCGATLINNLYVLTAAHCVHQ 161
           I+GG+ +  H  P+MA L  +    +  CG  L+   +VLTAAHC   
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGS 48

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score = 61.0 bits (146), Expect = 2e-12
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 117 IVGGQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVHQ 161
           I+ G   Y   +P+ A L       +R +CG +LI+N ++LTAAHCVH 
Sbjct: 1   IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHD 49

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.7 bits (143), Expect = 5e-12
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 128 YPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 160
            PW   +    ++ CG  L++  +VLTAAHC +
Sbjct: 3   QPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYN 35

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 59.3 bits (142), Expect = 5e-12
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQ 161
           I+GG  +  H  P+MA L        R  CG  LI+  +VLTAAHC  +
Sbjct: 1   IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGR 49

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 6e-12
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 119 GGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQ 161
           GG     H  P+MA L          +CG  LI   +VLTAAHC  +
Sbjct: 1   GGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGR 47

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.6 bits (140), Expect = 1e-11
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 117 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQ 161
           I+GG     H  P+MA L           CG  LI   +VLTAAHC   
Sbjct: 1   IIGGHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAHCSGS 49

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.1 bits (136), Expect = 4e-11
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 128 YPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 160
           + W   L Y+K       CG +LI   +V+TA HC+ 
Sbjct: 2   WSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIS 38

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.7 bits (135), Expect = 6e-11
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)

Query: 108 CG----AVNKKTRIVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCV 159
           CG      N   R+VGG+    H +PW   L Y +    R  CG TLI   +VLTAAHC+
Sbjct: 1   CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI 60

Query: 160 HQ 161
             
Sbjct: 61  SN 62

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

 Score = 47.8 bits (112), Expect = 6e-08
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 117 IVGG-----QVTYVHQYPWMALLMYKKRFY-CGATLINNLYVLTAAHCVH 160
           +V G     +V      P+ ++         C  TLI    +LT  HCV+
Sbjct: 1   VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVY 50

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Length = 263

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

 Score = 38.8 bits (89), Expect = 9e-05
 Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 6/40 (15%)

Query: 127 QYPWMALLMYKKRFYCGATLINNL------YVLTAAHCVH 160
               +          C  +L+NN       Y LTA HC  
Sbjct: 21  IIRAVGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGM 60

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 5/45 (11%)

Query: 121 QVTYVHQYPWMALLMY-----KKRFYCGATLINNLYVLTAAHCVH 160
           Q+T      +  +           F     ++    +LT  H V 
Sbjct: 10  QITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVD 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	99.53
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	99.52
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	99.49
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	99.48
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	99.44
d1elva1	259	Complement C1S protease, catalytic domain {Human (	99.4
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	98.56
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	98.15
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	97.69
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	97.57
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	96.93

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.5e-15  Score=114.35  Aligned_cols=47  Identities=45%  Similarity=0.880  Sum_probs=43.3

Q ss_pred             CCceeCCEEcCCCCCCeEEEEEeC-CeEeeEEEEeeCCeeeecccccC
Q psy8663         114 KTRIVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       114 ~~rIvgG~~a~~ge~PW~vsL~~~-~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ..||+||..+.+++|||+|+|... +.++|+|+||+++||||||||+.
T Consensus        15 ~~ri~gG~~a~~~~~Pw~v~i~~~~~~~~C~GtLIs~~~VLTaAhCv~   62 (247)
T d1rjxb_          15 PGAVVGGCVAYPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLE   62 (247)
T ss_dssp             CTTSTTCEECCTTSSTTEEEEEETTCCEEEEEEEEETTEEEEEGGGGT
T ss_pred             CCeEECCEECCCCCCCcEEEEEECCCCEEEEEEEEeCCEEEeeeEEEE
Confidence            468999999999999999999874 56799999999999999999995

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=3.6e-14  Score=110.09  Aligned_cols=48  Identities=46%  Similarity=0.814  Sum_probs=42.9

Q ss_pred             CCCceeCCEEcCCCCCCeEEEEEe--C--CeEeeEEEEeeCCeeeecccccC
Q psy8663         113 KKTRIVGGQVTYVHQYPWMALLMY--K--KRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       113 ~~~rIvgG~~a~~ge~PW~vsL~~--~--~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ...||+||+.+..++|||+|+|.+  .  ..++|+|+||+++||||||||+.
T Consensus        10 ~~~ri~gG~~a~~~~~Pw~v~i~~~~~~~~~~~C~G~LIs~~~VLTaAhC~~   61 (251)
T d1pytd_          10 LSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCIS   61 (251)
T ss_dssp             SSSSCCSSCCCCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCeEECCEECCCCCCCcEEEEEEEeCCCceeEEeEEEEcCCeEEEeeeccc
Confidence            467999999999999999999976  2  34689999999999999999995

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.7e-14  Score=110.45  Aligned_cols=45  Identities=40%  Similarity=0.785  Sum_probs=38.3

Q ss_pred             CCCceeCCEEcCCCCCCeEEEEEeCCeEeeEEEEeeCCeeeecccccC
Q psy8663         113 KKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       113 ~~~rIvgG~~a~~ge~PW~vsL~~~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ...||+||+.+..++|||+|.+.   .++|+|+||+++||||||||+.
T Consensus        10 ~~~ri~gG~~~~~~~~Pw~v~l~---~~~C~GtLIs~~~VLTaAhCv~   54 (259)
T d1elva1          10 EKQRIIGGSDADIKNFPWQVFFD---NPWAGGALINEYWVLTAAHVVE   54 (259)
T ss_dssp             ----CBTCEECCGGGSTTEEEEE---TTEEEEEEEETTEEEECHHHHT
T ss_pred             CCCceECCEECCCCCcceEEEeC---CceEEEEEEeCCEEEecccccc
Confidence            46799999999999999999994   3589999999999999999985

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=98.56  E-value=2.2e-08  Score=78.09  Aligned_cols=31  Identities=29%  Similarity=0.519  Sum_probs=27.0

Q ss_pred             eEEEEEeCCeEeeEEEEee------CCeeeecccccC
Q psy8663         130 WMALLMYKKRFYCGATLIN------NLYVLTAAHCVH  160 (161)
Q Consensus       130 W~vsL~~~~~~~CGGsLIs------~~~VLTAAHC~~  160 (161)
                      ..+.+..++.++||||||+      ++||||||||+.
T Consensus        24 ~v~~~~~~g~~~CGGsLI~~~~~~~~~~VLTAAHCv~   60 (263)
T d1arba_          24 AVGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGM   60 (263)
T ss_dssp             GEEEEEETTEEEEEEEEBCCTTCCCCCEEEEEGGGSC
T ss_pred             EEEEEecCCcEEEEEEEECCCCCCccceEEEchhhCC
Confidence            4567777889999999998      679999999985

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.69  E-value=5.9e-06  Score=63.33  Aligned_cols=36  Identities=25%  Similarity=0.336  Sum_probs=30.3

Q ss_pred             CCCCCeE--EEEEeCCeEeeEEEEeeCCeeeecccccC
Q psy8663         125 VHQYPWM--ALLMYKKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       125 ~ge~PW~--vsL~~~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ...+||.  +.+...+...|.|+||++++||||+||+.
T Consensus        38 ~~~~p~~~v~~i~~~g~~~gTG~lI~~~~ILTa~Hvv~   75 (242)
T d1agja_          38 RQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAK   75 (242)
T ss_dssp             GGSTTGGGEEEEEETTTEEEEEEECSSSEEEECHHHHG
T ss_pred             cccCCcccEEEEEeCCCccEEEEEEeCCEEEEcccEec
Confidence            3467876  56767788899999999999999999984

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.57  E-value=9.3e-06  Score=60.62  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=21.5

Q ss_pred             CCeEeeEEEEeeCCeeeecccccC
Q psy8663         137 KKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       137 ~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ++.++|.|+||++++|||||||+.
T Consensus        31 ~~~~~cTG~lI~~~~vLTAaHcv~   54 (216)
T d2o8la1          31 TGTFIASGVVVGKDTLLTNKHVVD   54 (216)
T ss_dssp             TEEEEEEEEEEETTEEEECHHHHH
T ss_pred             CCCEEEEEEEEeCCEEEEeeeeec
Confidence            456789999999999999999985

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.93  E-value=0.00029  Score=54.24  Aligned_cols=36  Identities=17%  Similarity=0.251  Sum_probs=29.7

Q ss_pred             CCCCCe--EEEEEeCCeEeeEEEEeeCCeeeecccccC
Q psy8663         125 VHQYPW--MALLMYKKRFYCGATLINNLYVLTAAHCVH  160 (161)
Q Consensus       125 ~ge~PW--~vsL~~~~~~~CGGsLIs~~~VLTAAHC~~  160 (161)
                      ...+||  ...+...+..+|.|+||++.+|||++||+.
T Consensus        31 ~~~~p~~~v~~i~~~g~~~GTGflI~~~~ILTa~HVv~   68 (246)
T d1qtfa_          31 NARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAR   68 (246)
T ss_dssp             CSSTTGGGEEEEEETTTEEEEEEEEETTEEEECHHHHG
T ss_pred             cccCccccEEEEEeCCCceEEEEEEeCCeEEEchhecc
Confidence            345666  556767788899999999999999999984