Psyllid ID: psy8670

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MDTKLSVLFVPVLLGCIHLSVGFKEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRIKILLDFVPNHTSNQHEWFKKSLANIPPYSV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHccccccccEEEEEccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHccEEEEcHHHcccccccccccHHHHHccHHHHHHHHcccEEEEcccEEcccccccccccccccEccccccHHHHHHHHHHHHHcccEEEEEEcccEEEcccHHHHHHHcccHEEEccEEEHHHHHHcccEEEEcccEEcccccccccccEEEEEEEEEEEcccEEEcccHHHHHHccccccccc
Coil and Loop (DISEMBL)
MDTKLSVLFVPVLLGCIHlsvgfkedvdvpiqeplewwqtsvfyhlyprsfkdsngdgvgdLKGMIEKLPEHlhdlgvgavwispifkspmadfgydisdylsfeplfgdlkDFETLKERLHALGIKILLdfvpnhtsnqHEWFKKslanippykcASLLARLHDLgvgavwispifkspmadfgydisDYLRIKILLDfvpnhtsnqHEWFKKslanippysv
Flexible Loop (DISEMBL)
mdtklsvlFVPVLLGCIHLSVGFKEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRIKILLDFVPNHTSNQhewfkkslanippysv
Low Complexity Region (SEG)
MDTKLSVLFVPVLLGCIHLSVGFKEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRIKILLDFVPNHTSNQHEWFKKSLANIPPYSV
Disordered region (IsUnstruct)
****LSVLFVPVLLGCIHLSVGFKEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRIKILLDFVPNHTSNQHEWFK***********
Disordered Region (DISOPRED)
***KLSVLFVPVLLGCIHLSV***************WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK**********CASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRIKILLDFVPNHTSNQHEWFK***********
Disordered Region (DISEMBL)
MDTKLSVLFVPVLLGCIHLSVGFKEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRIKILLDFVPNHTSNQHEWFKKSLANIPPYSV
Disordered Region (DISPRO)
*DTKLSVLFVPVLLGCIHLSVGFK********EPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRIKILLDFVPNHTSNQHEWFKKSLA*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDTKLSVLFVPVLLGCIHLSVGFKEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRIKILLDFVPNHTSNQHEWFKKSLANIPPYSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
O16099	594	Maltase 2 OS=Drosophila v	N/A	N/A	0.531	0.200	0.616	7e-40
O16098	632	Maltase 1 OS=Drosophila v	N/A	N/A	0.553	0.196	0.568	2e-39
P07190	577	Probable maltase H OS=Dro	no	N/A	0.531	0.206	0.55	1e-36
P07192	574	Maltase A3 OS=Drosophila	no	N/A	0.526	0.205	0.571	3e-36
Q17058	567	Alpha-glucosidase OS=Apis	no	N/A	0.504	0.199	0.578	2e-34
P07191	567	Probable maltase D OS=Dro	no	N/A	0.531	0.209	0.508	1e-33
Q9Z3R8	551	Probable alpha-glucosidas	yes	N/A	0.508	0.206	0.504	9e-33
P28904	551	Trehalose-6-phosphate hyd	N/A	N/A	0.526	0.214	0.470	1e-30
P29094	562	Oligo-1,6-glucosidase OS=	no	N/A	0.517	0.206	0.516	2e-30
Q45101	555	Oligo-1,6-glucosidase OS=	yes	N/A	0.522	0.210	0.495	4e-30

>sp|O16099|MAL2_DROVI Maltase 2 OS=Drosophila virilis GN=Mal-B2 PE=3 SV=2

 Score =  163 bits (413), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 74/120 (61%), Positives = 94/120 (78%), Gaps = 1/120 (0%)

Query: 35  LEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF 94
           ++WWQ +VFY +YPRSFKDSNGDG+GDL+G+I KLP +L + G+ A W+SPIF+SPM DF
Sbjct: 41  IDWWQHAVFYQIYPRSFKDSNGDGIGDLQGVISKLP-YLAETGITATWLSPIFQSPMVDF 99

Query: 95  GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
           GYD+SDY S +  +G + DFE L     +LGIKI+LDFVPNHTS++HEWF KS A  P Y
Sbjct: 100 GYDVSDYKSIQTEYGTMADFEQLVNTATSLGIKIILDFVPNHTSDKHEWFIKSAARDPLY 159

Drosophila virilis (taxid: 7244)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 0

>sp|O16098|MAL1_DROVI Maltase 1 OS=Drosophila virilis GN=Mal-B1 PE=3 SV=2

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 71/125 (56%), Positives = 97/125 (77%), Gaps = 1/125 (0%)

Query: 31  IQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP 90
           + + + WW+  VFY +YPRSFKDS+GDG+GDLKG+  KL ++  D G+ A+W+SPI+KSP
Sbjct: 76  LDDNINWWRHEVFYQIYPRSFKDSDGDGIGDLKGITSKL-QYFVDTGITAIWLSPIYKSP 134

Query: 91  MADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
           M DFGYDISDY   +P +G L+DF+ L  + + LGIK++LDFVPNH+S++HEWFKKS A 
Sbjct: 135 MVDFGYDISDYRDIQPEYGTLEDFDALIAKANQLGIKVILDFVPNHSSDEHEWFKKSAAR 194

Query: 151 IPPYK 155
            P Y+
Sbjct: 195 EPGYE 199

Drosophila virilis (taxid: 7244)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|P07190|MAL2_DROME Probable maltase H OS=Drosophila melanogaster GN=LvpH PE=2 SV=2

 Score =  153 bits (386), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 91/120 (75%), Gaps = 1/120 (0%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
           EWW++  +Y +YPRSF+DS+GDG+GDL G+ EKL ++L D+G    W+SPIFKSPM DFG
Sbjct: 21  EWWESGNYYQIYPRSFRDSDGDGIGDLNGVTEKL-QYLKDIGFTGTWLSPIFKSPMVDFG 79

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
           YDISD+    P +G ++DFE +  +   +GIKI+LDFVPNH+S ++EWF KS+ + P YK
Sbjct: 80  YDISDFYQIHPEYGTMEDFERMIAKAKEVGIKIILDFVPNHSSTENEWFTKSVDSDPVYK 139

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|P07192|MAL3_DROME Maltase A3 OS=Drosophila melanogaster GN=Mal-A3 PE=2 SV=2

 Score =  152 bits (383), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/119 (57%), Positives = 90/119 (75%), Gaps = 1/119 (0%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           WW+T  FY +YPRSFKDS+GDGVGDL G+ ++LP +L ++G+ A W+SPIF SPMADFGY
Sbjct: 23  WWKTGQFYQIYPRSFKDSDGDGVGDLIGITQQLP-YLKEIGITATWLSPIFTSPMADFGY 81

Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
           D++D    +P+FG ++DFE L  R   L IKI+LDFVPNHTS++ +WF +S A    YK
Sbjct: 82  DVADLKGIDPIFGTMEDFEALLARAKELDIKIILDFVPNHTSDECDWFIRSAAGEEEYK 140

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|Q17058|MAL1_APIME Alpha-glucosidase OS=Apis mellifera PE=1 SV=1

 Score =  145 bits (367), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/114 (57%), Positives = 85/114 (74%), Gaps = 1/114 (0%)

Query: 42  VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDY 101
           + Y +YPRSFKDSNGDG+GD++G+ EKL +H  ++GV   W+SPI+ SPM DFGYDIS+Y
Sbjct: 31  IVYQVYPRSFKDSNGDGIGDIEGIKEKL-DHFLEMGVDMFWLSPIYPSPMVDFGYDISNY 89

Query: 102 LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
               P+FG + D + L    H  G+KI+LDFVPNHTS+QHEWF+ SL NI PY 
Sbjct: 90  TDVHPIFGTISDLDNLVSAAHEKGLKIILDFVPNHTSDQHEWFQLSLKNIEPYN 143

Converts sucrose in nectar to glucose and fructose.

Apis mellifera (taxid: 7460)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|P07191|MAL1_DROME Probable maltase D OS=Drosophila melanogaster GN=LvpD PE=2 SV=2

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 92/120 (76%), Gaps = 1/120 (0%)

Query: 35  LEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF 94
           ++WW+ +  Y +YPRSF+DS+GDG+GDLKG+  +L  +L ++G+ A W+SPIF SPM+DF
Sbjct: 25  IDWWENASLYQIYPRSFQDSDGDGIGDLKGITSRLG-YLKEIGITATWLSPIFTSPMSDF 83

Query: 95  GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
           GYDIS++   +P+FG L+DF+ L     +LG+KI+LDFVPNH+S+++ WF+KS+     Y
Sbjct: 84  GYDISNFYDIDPIFGTLEDFDDLIVEAKSLGVKIILDFVPNHSSDENVWFEKSVNREDGY 143

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|Q9Z3R8|AGLA_RHIME Probable alpha-glucosidase OS=Rhizobium meliloti (strain 1021) GN=aglA PE=3 SV=2

 Score =  140 bits (352), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 88/115 (76%), Gaps = 1/115 (0%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
           +WW+ +V Y +YPRSF+D+NGDG+GDL+G+  +LP H+  LG  A+WISP F SPM DFG
Sbjct: 16  DWWRGAVIYQIYPRSFQDTNGDGIGDLQGITARLP-HIAGLGADAIWISPFFTSPMRDFG 74

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
           YD+S+Y+  +P+FG L+DF+ L    H LG+++++D V +HTS++H WF +S ++
Sbjct: 75  YDVSNYVDVDPIFGTLEDFDALIAEAHRLGLRVMIDLVLSHTSDRHPWFVESRSS 129

Rhizobium meliloti (strain 1021) (taxid: 266834)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|P28904|TREC_ECOLI Trehalose-6-phosphate hydrolase OS=Escherichia coli (strain K12) GN=treC PE=3 SV=3

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 84/119 (70%), Gaps = 1/119 (0%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           WWQ  V Y +YP+SF+D+ G G GDL+G+I+ L ++LH LGV A+W++P + SP  D GY
Sbjct: 7   WWQNGVIYQIYPKSFQDTTGSGTGDLRGVIQHL-DYLHKLGVDAIWLTPFYVSPQVDNGY 65

Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
           D+++Y + +P +G L DF+ L  +  + GI+I+LD V NHTS QH WF+++L    PY+
Sbjct: 66  DVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYR 124

Escherichia coli (strain K12) (taxid: 83333)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 9

EC: 3

>sp|P29094|O16G_BACTR Oligo-1,6-glucosidase OS=Bacillus thermoglucosidasius GN=malL PE=1 SV=1

 Score =  132 bits (331), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/122 (51%), Positives = 88/122 (72%), Gaps = 6/122 (4%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           WW+ +V Y +YPRSF DSNGDG+GD++G+I KL ++L +LGV  VW+SP++KSP  D GY
Sbjct: 5   WWKEAVVYQIYPRSFYDSNGDGIGDIRGIIAKL-DYLKELGVDVVWLSPVYKSPNDDNGY 63

Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF---KKSLANIPP 153
           DISDY      FG + D++T+ E +H  GIK+++D V NHTS++H WF   +KS  N  P
Sbjct: 64  DISDYRDIMDEFGTMADWKTMLEEMHKRGIKLVMDLVVNHTSDEHPWFIESRKSKDN--P 121

Query: 154 YK 155
           Y+
Sbjct: 122 YR 123

Bacillus thermoglucosidasius (taxid: 1426)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|Q45101|O16G_BACCO Oligo-1,6-glucosidase OS=Bacillus coagulans GN=malL PE=3 SV=1

 Score =  131 bits (329), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 87/123 (70%), Gaps = 6/123 (4%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
           EWW+ +V Y +YPRSF D+NGDG+GDL+G+++KL ++L  LG+  +WISP++ SP  D G
Sbjct: 3   EWWKKAVVYQIYPRSFYDTNGDGIGDLRGIMDKL-DYLKTLGIDCIWISPVYDSPQDDNG 61

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF---KKSLANIP 152
           YDI DY   + +FG  +D + L +  HA GIKI++D V NHTS++H WF   +KS  N  
Sbjct: 62  YDIRDYRKIDKMFGTNEDMDRLLDEAHARGIKIVMDLVVNHTSDEHAWFVESRKSKDN-- 119

Query: 153 PYK 155
           PY+
Sbjct: 120 PYR 122

Bacillus coagulans (taxid: 1398)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
193709215	621	PREDICTED: probable maltase H [Acyrthosi	0.549	0.198	0.653	2e-43
328702366	573	PREDICTED: maltase 2-like [Acyrthosiphon	0.531	0.207	0.633	2e-42
158299642	683	AGAP008965-PA [Anopheles gambiae str. PE	0.526	0.172	0.621	1e-40
195116945	594	GI24716 [Drosophila mojavensis] gi|19391	0.571	0.215	0.589	2e-40
170055688	605	alpha-glucosidase [Culex quinquefasciatu	0.660	0.244	0.535	7e-40
194861545	583	GG23742 [Drosophila erecta] gi|190661671	0.535	0.205	0.619	2e-39
312385458	809	hypothetical protein AND_00763 [Anophele	0.535	0.148	0.586	3e-39
195053049	593	GH13812 [Drosophila grimshawi] gi|193900	0.593	0.224	0.580	6e-39
157126493	601	alpha-amylase [Aedes aegypti] gi|1088732	0.558	0.207	0.604	7e-39
332018170	567	Alpha-glucosidase [Acromyrmex echinatior	0.638	0.252	0.54	8e-39

>gi|193709215|ref|XP_001943317.1| PREDICTED: probable maltase H [Acyrthosiphon pisum]

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/124 (65%), Positives = 105/124 (84%), Gaps = 1/124 (0%)

Query: 32  QEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM 91
           ++ LEWW+T+V+Y +YPRSFKDSNGDG+GDLKG IE+  EH  D+GV  VW+SPIFKSPM
Sbjct: 29  EKSLEWWKTAVYYQVYPRSFKDSNGDGIGDLKG-IEEKAEHFKDIGVDCVWLSPIFKSPM 87

Query: 92  ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANI 151
           ADFGYDISDY   +P++G + DF +L+++L +LGIKI+LDFVPNH+S++HEWFKKS+  I
Sbjct: 88  ADFGYDISDYNMIDPVYGTMDDFISLQKKLQSLGIKIILDFVPNHSSDEHEWFKKSVDKI 147

Query: 152 PPYK 155
            PYK
Sbjct: 148 MPYK 151

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702366|ref|XP_001943582.2| PREDICTED: maltase 2-like [Acyrthosiphon pisum]

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 102/120 (85%), Gaps = 1/120 (0%)

Query: 35  LEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF 94
           L+WWQT V Y +YPRSFKDSNGDGVGDLKG IE++ EH  + G+GA+W+SPIFKSP+ADF
Sbjct: 24  LDWWQTGVIYQVYPRSFKDSNGDGVGDLKG-IEEMAEHFQETGIGAIWLSPIFKSPLADF 82

Query: 95  GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
           GYDISD++S +  +G ++DF +L+ +L +LG++ILLDFVPNH+S++HEWF+KS+  I PY
Sbjct: 83  GYDISDFVSIDSTYGTMEDFLSLQRKLKSLGVRILLDFVPNHSSDEHEWFQKSVKKIDPY 142

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158299642|ref|XP_319713.4| AGAP008965-PA [Anopheles gambiae str. PEST] gi|157013615|gb|EAA14849.4| AGAP008965-PA [Anopheles gambiae str. PEST]

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/119 (62%), Positives = 94/119 (78%), Gaps = 1/119 (0%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
           +WWQ +VFY +YPRSF DSNGDGVGDL+G+  +L EHL D G+GA W+SPIF+SPM DFG
Sbjct: 40  DWWQRTVFYQIYPRSFMDSNGDGVGDLRGITSRL-EHLKDAGIGATWLSPIFRSPMVDFG 98

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
           YDI+DY + +P +G ++DFE L      LGIKI+LDFVPNHTS+Q EWF++S+A   PY
Sbjct: 99  YDIADYTAIQPEYGTMEDFEALLAEAKRLGIKIILDFVPNHTSDQCEWFRRSVAREHPY 157

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195116945|ref|XP_002003011.1| GI24716 [Drosophila mojavensis] gi|193913586|gb|EDW12453.1| GI24716 [Drosophila mojavensis]

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 102/129 (79%), Gaps = 1/129 (0%)

Query: 27  VDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPI 86
           V    ++ ++WWQ +VFY +YPRSFKDSNGDG+GDL+G+I KLP +L + G+ A W+SPI
Sbjct: 33  VSSQTEDFIDWWQHAVFYQIYPRSFKDSNGDGIGDLQGIISKLP-YLAETGITATWLSPI 91

Query: 87  FKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKK 146
           F+SPM DFGYDISDY + +P +G + DF+ L  +  +LGIKI+LDFVPNH+S+QHEWFKK
Sbjct: 92  FQSPMVDFGYDISDYRAIQPEYGSMADFDQLVHKASSLGIKIILDFVPNHSSDQHEWFKK 151

Query: 147 SLANIPPYK 155
           S+A  P Y+
Sbjct: 152 SVARDPVYE 160

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170055688|ref|XP_001863693.1| alpha-glucosidase [Culex quinquefasciatus] gi|167875568|gb|EDS38951.1| alpha-glucosidase [Culex quinquefasciatus]

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 84/157 (53%), Positives = 111/157 (70%), Gaps = 9/157 (5%)

Query: 4   KLSVLF-VPVLLGCIHLSVGFKE----DVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDG 58
           ++ VLF + +L+  +      +E    D D+P    L+WW+  VFY +YPRSFKDSNGDG
Sbjct: 3   RVQVLFWLGLLVAVVSAKTTGREEDGHDHDLP---ELDWWEGGVFYQIYPRSFKDSNGDG 59

Query: 59  VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLK 118
            GD+KG++EKL +HL DLGV  VW SP+FKSPM DFGYDISD+L  +P FG +KD E L 
Sbjct: 60  TGDIKGILEKL-DHLVDLGVTGVWFSPLFKSPMKDFGYDISDFLDVDPTFGTMKDLEDLL 118

Query: 119 ERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
            +   LGIK++LDFVPNHTS++HEWF KS +  P ++
Sbjct: 119 AKAKQLGIKVILDFVPNHTSDEHEWFVKSKSGDPDFR 155

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194861545|ref|XP_001969804.1| GG23742 [Drosophila erecta] gi|190661671|gb|EDV58863.1| GG23742 [Drosophila erecta]

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 97/121 (80%), Gaps = 1/121 (0%)

Query: 35  LEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF 94
           ++WWQ +VFY +YPRSFKDSNGDG+GDLKG+  KL  +L D G+ A W+SPIF+SPM DF
Sbjct: 32  IDWWQHTVFYQIYPRSFKDSNGDGIGDLKGITSKL-HYLADTGITATWLSPIFQSPMVDF 90

Query: 95  GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
           GYDISDY + +P +G ++DFE L +    LGIK++LDFVPNH+S+QHEWFKKS+A  P Y
Sbjct: 91  GYDISDYKAIQPEYGTMQDFEELIDTAFELGIKVILDFVPNHSSDQHEWFKKSVAKEPGY 150

Query: 155 K 155
           +
Sbjct: 151 E 151

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385458|gb|EFR29953.1| hypothetical protein AND_00763 [Anopheles darlingi]

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/121 (58%), Positives = 95/121 (78%), Gaps = 1/121 (0%)

Query: 35  LEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF 94
           L+WW+  VFY +YPRSFKDS+ +GVGDLKG+ EKL  HL DLG+  VW+SP+FKSPMADF
Sbjct: 239 LDWWEAGVFYQIYPRSFKDSDSNGVGDLKGITEKL-GHLVDLGIDGVWLSPVFKSPMADF 297

Query: 95  GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
           GYDI+D+ S +PLFG + D + +  +   LGI+++LDFVPNHTS++HEWF K+  N P +
Sbjct: 298 GYDIADFRSIDPLFGTMADLDAMIAKAKELGIRVILDFVPNHTSDEHEWFVKAQNNDPAF 357

Query: 155 K 155
           +
Sbjct: 358 R 358

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195053049|ref|XP_001993444.1| GH13812 [Drosophila grimshawi] gi|193900503|gb|EDV99369.1| GH13812 [Drosophila grimshawi]

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/136 (58%), Positives = 102/136 (75%), Gaps = 3/136 (2%)

Query: 35  LEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF 94
           ++WWQ +VFY +YPRSFKDSNGDG+GDL+G+I KLP +L + G+ A W+SPIF+SPM DF
Sbjct: 40  IDWWQHAVFYQIYPRSFKDSNGDGIGDLQGIISKLP-YLAETGITATWLSPIFQSPMVDF 98

Query: 95  GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
           GYDISD+ S +  +G + DFE L      LGIKI+LDFVPNH+SNQHEWFKKS A    +
Sbjct: 99  GYDISDFKSIQSEYGSMSDFEELVHTAARLGIKIILDFVPNHSSNQHEWFKKSAARAAGF 158

Query: 155 KCASLLA--RLHDLGV 168
           +   + A  +L +LGV
Sbjct: 159 EDYYVWADGQLDELGV 174

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157126493|ref|XP_001660907.1| alpha-amylase [Aedes aegypti] gi|108873258|gb|EAT37483.1| AAEL010532-PA [Aedes aegypti]

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 78/129 (60%), Positives = 100/129 (77%), Gaps = 4/129 (3%)

Query: 26  DVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISP 85
           D D+P    L+WW+  VFY +YPRSFKD+N DGVGD+ G++EKL +HL DLGV  VW SP
Sbjct: 28  DHDMP---ELDWWEGGVFYQIYPRSFKDTNNDGVGDIAGIMEKL-DHLVDLGVTGVWFSP 83

Query: 86  IFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK 145
           +FKSPM DFGYDISD+   +P FG L+D + L ++   LGIK++LDFVPNHTS++HEWFK
Sbjct: 84  LFKSPMKDFGYDISDFKDVDPTFGTLEDLKALIKKAKELGIKVILDFVPNHTSDEHEWFK 143

Query: 146 KSLANIPPY 154
           K+LA+ P Y
Sbjct: 144 KALADDPDY 152

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018170|gb|EGI58776.1| Alpha-glucosidase [Acromyrmex echinatior]

 Score =  166 bits (419), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 81/150 (54%), Positives = 106/150 (70%), Gaps = 7/150 (4%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
           +WWQ+   Y +YPRSFKDS+G+GVGDLKG+I KL EHL +  V A W+SPI+ SPM DFG
Sbjct: 24  KWWQSMSLYQIYPRSFKDSDGNGVGDLKGIISKL-EHLSESNVDAFWLSPIYPSPMIDFG 82

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
           YDISD++S + +FG +KDFE L +  HA  +KI++DFVPNH+S+QHEWF+KSL NI PY 
Sbjct: 83  YDISDFVSIDKMFGTMKDFEVLVQATHAASMKIIMDFVPNHSSDQHEWFQKSLQNIKPYT 142

Query: 156 CASLLARLHDLGVGAV-----WISPIFKSP 180
              +  +   L  G V     W+S +F  P
Sbjct: 143 NYYIWHKGKVLPNGTVTVPNNWVS-VFGGP 171

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
FB|FBgn0032382	583	Mal-B2 "Maltase B2" [Drosophil	0.535	0.205	0.611	5.3e-40
FB|FBgn0050359	630	Mal-A5 "Maltase A5" [Drosophil	0.535	0.190	0.603	2e-38
FB|FBgn0033297	588	Mal-A8 "Maltase A8" [Drosophil	0.531	0.202	0.608	2.6e-38
FB|FBgn0033294	579	Mal-A4 "Maltase A4" [Drosophil	0.526	0.203	0.588	2.5e-37
FB|FBgn0032381	584	Mal-B1 "Maltase B1" [Drosophil	0.526	0.202	0.554	2.8e-37
FB|FBgn0002570	577	Mal-A1 "Maltase A1" [Drosophil	0.531	0.206	0.55	2.9e-36
FB|FBgn0002571	574	Mal-A3 "Maltase A3" [Drosophil	0.562	0.219	0.543	6.1e-36
FB|FBgn0050360	601	Mal-A6 "Maltase A6" [Drosophil	0.660	0.246	0.461	2.8e-35
TIGR_CMR|SO_2213	540	SO_2213 "oligo-1,6-glucosidase	0.5	0.207	0.584	1.1e-34
UNIPROTKB|O53198	546	aglA "Probable alpha-glucosida	0.535	0.219	0.544	1.5e-34

FB|FBgn0032382 Mal-B2 "Maltase B2" [Drosophila melanogaster (taxid:7227)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 74/121 (61%), Positives = 95/121 (78%)

Query:    35 LEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF 94
             ++WW  +VFY +YPRSFKDSNGDG+GDLKG+  KL  +L D G+ A W+SPIF+SPM DF
Sbjct:    32 IDWWPHTVFYQIYPRSFKDSNGDGIGDLKGITSKL-RYLADTGITATWLSPIFQSPMIDF 90

Query:    95 GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
             GYDISDY + +P +G ++DFE L +    LGIK++LDFVPNH+S+QHEWFKKS A  P Y
Sbjct:    91 GYDISDYKAIQPEYGTMQDFEELIDTAFELGIKVVLDFVPNHSSDQHEWFKKSAAREPGY 150

Query:   155 K 155
             +
Sbjct:   151 E 151

GO:0004558 "alpha-glucosidase activity" evidence=ISS

GO:0043169 "cation binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

FB|FBgn0050359 Mal-A5 "Maltase A5" [Drosophila melanogaster (taxid:7227)]

 Score = 414 (150.8 bits), Expect = 2.0e-38, P = 2.0e-38
 Identities = 73/121 (60%), Positives = 94/121 (77%)

Query:    35 LEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF 94
             L+WWQT+ FY +YPRSFKDSNGDGVGDL G+ E+LP +L +LG+ A W+SPIF SPMADF
Sbjct:    42 LKWWQTAAFYQIYPRSFKDSNGDGVGDLNGIAEQLP-YLKELGITATWLSPIFTSPMADF 100

Query:    95 GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
             GYDI+++    P+FG + DFE L E    L IKI+LDFVPNH+S++ EWF++S A  P +
Sbjct:   101 GYDIANFTEIAPIFGTMADFEHLMEVAKKLDIKIILDFVPNHSSDECEWFRRSAARDPEF 160

Query:   155 K 155
             K
Sbjct:   161 K 161

GO:0043169 "cation binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

FB|FBgn0033297 Mal-A8 "Maltase A8" [Drosophila melanogaster (taxid:7227)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 73/120 (60%), Positives = 92/120 (76%)

Query:    36 EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
             +WWQT+ FY +YPRSFKDS+GDG+GDL G+  KL E+L DLGV A W+SPIFKSPM DFG
Sbjct:    32 DWWQTAQFYQIYPRSFKDSDGDGIGDLNGITSKL-EYLKDLGVTAAWLSPIFKSPMVDFG 90

Query:    96 YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
             YDISD+   +P +G L+DF TL +R   L +KI+LDFVPNH+SN+ EWF KS+     Y+
Sbjct:    91 YDISDFFDIQPEYGTLEDFRTLIKRAKELDLKIVLDFVPNHSSNESEWFLKSVKREKGYE 150

GO:0004558 "alpha-glucosidase activity" evidence=ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

FB|FBgn0033294 Mal-A4 "Maltase A4" [Drosophila melanogaster (taxid:7227)]

 Score = 401 (146.2 bits), Expect = 2.5e-37, P = 2.5e-37
 Identities = 70/119 (58%), Positives = 93/119 (78%)

Query:    37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
             WW+T+ FY +YPRSFKDS+G+GVGDL G+ EKL E+L ++GV A W+SP  KSPMADFGY
Sbjct:    24 WWKTASFYQIYPRSFKDSDGNGVGDLNGVTEKL-EYLKEIGVTATWLSPFLKSPMADFGY 82

Query:    97 DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
             DISD+ + +PLFG ++DFE +  R   LG+KI+LDFVPNH+S++ +WF +S A    YK
Sbjct:    83 DISDFKAVDPLFGTMEDFENMVSRAKELGVKIILDFVPNHSSDECDWFLRSAAGEEEYK 141

GO:0004558 "alpha-glucosidase activity" evidence=ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

FB|FBgn0032381 Mal-B1 "Maltase B1" [Drosophila melanogaster (taxid:7227)]

 Score = 401 (146.2 bits), Expect = 2.8e-37, P = 2.8e-37
 Identities = 66/119 (55%), Positives = 94/119 (78%)

Query:    37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
             WWQ  VFY +YPRSF+DSNGDG+GDL+G+  +L ++  D G+ +VW+SPI++SPM DFGY
Sbjct:    33 WWQHEVFYQIYPRSFQDSNGDGIGDLQGITSRL-QYFKDTGITSVWLSPIYESPMVDFGY 91

Query:    97 DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
             DIS+Y + +P +G L+DF+ L  + + LG+K++LDFVPNH+SN+H WF KS+A  P Y+
Sbjct:    92 DISNYTNIQPEYGTLEDFDALIAKANELGVKVILDFVPNHSSNKHPWFIKSVAREPGYE 150

GO:0004558 "alpha-glucosidase activity" evidence=ISS

GO:0043169 "cation binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

FB|FBgn0002570 Mal-A1 "Maltase A1" [Drosophila melanogaster (taxid:7227)]

 Score = 392 (143.0 bits), Expect = 2.9e-36, P = 2.9e-36
 Identities = 66/120 (55%), Positives = 91/120 (75%)

Query:    36 EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
             EWW++  +Y +YPRSF+DS+GDG+GDL G+ EKL ++L D+G    W+SPIFKSPM DFG
Sbjct:    21 EWWESGNYYQIYPRSFRDSDGDGIGDLNGVTEKL-QYLKDIGFTGTWLSPIFKSPMVDFG 79

Query:    96 YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
             YDISD+    P +G ++DFE +  +   +GIKI+LDFVPNH+S ++EWF KS+ + P YK
Sbjct:    80 YDISDFYQIHPEYGTMEDFERMIAKAKEVGIKIILDFVPNHSSTENEWFTKSVDSDPVYK 139

GO:0004558 "alpha-glucosidase activity" evidence=NAS

GO:0006006 "glucose metabolic process" evidence=NAS

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

FB|FBgn0002571 Mal-A3 "Maltase A3" [Drosophila melanogaster (taxid:7227)]

 Score = 389 (142.0 bits), Expect = 6.1e-36, P = 6.1e-36
 Identities = 69/127 (54%), Positives = 93/127 (73%)

Query:    29 VPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK 88
             +P    + WW+T  FY +YPRSFKDS+GDGVGDL G+ ++LP +L ++G+ A W+SPIF 
Sbjct:    15 LPSLAEVGWWKTGQFYQIYPRSFKDSDGDGVGDLIGITQQLP-YLKEIGITATWLSPIFT 73

Query:    89 SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSL 148
             SPMADFGYD++D    +P+FG ++DFE L  R   L IKI+LDFVPNHTS++ +WF +S 
Sbjct:    74 SPMADFGYDVADLKGIDPIFGTMEDFEALLARAKELDIKIILDFVPNHTSDECDWFIRSA 133

Query:   149 ANIPPYK 155
             A    YK
Sbjct:   134 AGEEEYK 140

GO:0004558 "alpha-glucosidase activity" evidence=NAS

GO:0006006 "glucose metabolic process" evidence=NAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

FB|FBgn0050360 Mal-A6 "Maltase A6" [Drosophila melanogaster (taxid:7227)]

 Score = 385 (140.6 bits), Expect = 2.8e-35, P = 2.8e-35
 Identities = 72/156 (46%), Positives = 105/156 (67%)

Query:     7 VLFVPVLLGCIHLSVGFKEDVDVPIQEPL-------EWWQTSVFYHLYPRSFKDSNGDGV 59
             VL   +L+  IH ++G    VD+ ++          +WWQ + FY +YPRS+KDS+GDG+
Sbjct:     6 VLIAAILVLGIHCALGSAAAVDLDLERATTAADTTRDWWQVAQFYQIYPRSYKDSDGDGI 65

Query:    60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119
             GDL+G+I KL ++L ++GV A W+SPI+ SPMADFGYDISD+   +P +G L DF+ L  
Sbjct:    66 GDLQGIISKL-DYLKEIGVTATWLSPIYSSPMADFGYDISDFFDIQPEYGTLADFDELIA 124

Query:   120 RLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
                   IKI+LDFVPNH+S+++ WF+KS+     Y+
Sbjct:   125 EAKKRNIKIILDFVPNHSSDENVWFQKSVKREKGYE 160

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

TIGR_CMR|SO_2213 SO_2213 "oligo-1,6-glucosidase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 66/113 (58%), Positives = 87/113 (76%)

Query:    35 LEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF 94
             L WW+ +V Y +YPRS  D+NGDGVGDL+G+I KL +++  L V A+WISP FKSPMADF
Sbjct:     4 LTWWRGAVIYQIYPRSLLDTNGDGVGDLRGIITKL-DYIASLNVDAIWISPFFKSPMADF 62

Query:    95 GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147
             GYDISDY   +PLFG ++DF+ L E+ H  GIK+++D V +HTS+QH WF +S
Sbjct:    63 GYDISDYREIDPLFGSMQDFDELIEKAHQRGIKVIIDQVLSHTSDQHAWFIES 115

GO:0004558 "alpha-glucosidase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|O53198 aglA "Probable alpha-glucosidase AglA (Maltase) (Glucoinvertase) (Glucosidosucrase) (Maltase-glucoamylase) (Lysosomal alpha-glucosidase) (Acid maltase)" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 375 (137.1 bits), Expect = 1.5e-34, P = 1.5e-34
 Identities = 67/123 (54%), Positives = 87/123 (70%)

Query:    30 PIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS 89
             P+ EP  WW  +VFY +YPRSF DSNGDGVGDL G+  +L +HL  LGV A+WI+P+  S
Sbjct:    26 PMGEP--WWSRAVFYQVYPRSFADSNGDGVGDLDGLASRL-DHLQQLGVDAIWINPVTVS 82

Query:    90 PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLA 149
             PMAD GYD++D    +PLFG +  FE L    H  GIK+ +D VPNHTS+ H WF+ +LA
Sbjct:    83 PMADHGYDVADPRDIDPLFGGMPAFERLVAAAHRQGIKVTMDVVPNHTSSAHPWFQAALA 142

Query:   150 NIP 152
             ++P
Sbjct:   143 DLP 145

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Z3R8	AGLA_RHIME	3, ., 2, ., 1, ., 2, 0	0.5043	0.5089	0.2068	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	224
cd11328	470	cd11328, AmyAc_maltase, Alpha amylase catalytic do	9e-74
cd11333	428	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase ca	8e-64
cd11331	450	cd11331, AmyAc_OligoGlu_like, Alpha amylase cataly	2e-62
cd11330	472	cd11330, AmyAc_OligoGlu, Alpha amylase catalytic d	2e-61
cd11359	456	cd11359, AmyAc_SLC3A1, Alpha amylase catalytic dom	1e-59
cd11332	481	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalyti	7e-57
TIGR02403	543	TIGR02403, trehalose_treC, alpha,alpha-phosphotreh	2e-53
cd11334	447	cd11334, AmyAc_TreS, Alpha amylase catalytic domai	2e-48
cd11316	403	cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic	4e-47
cd11348	429	cd11348, AmyAc_2, Alpha amylase catalytic domain f	7e-43
PRK10933	551	PRK10933, PRK10933, trehalose-6-phosphate hydrolas	2e-41
COG0366	505	COG0366, AmyA, Glycosidases [Carbohydrate transpor	1e-40
TIGR02456	539	TIGR02456, treS_nterm, trehalose synthase	2e-39
smart00642	166	smart00642, Aamy, Alpha-amylase domain	3e-39
pfam00128	314	pfam00128, Alpha-amylase, Alpha amylase, catalytic	1e-38
cd00551	260	cd00551, AmyAc_family, Alpha amylase catalytic dom	1e-30
cd11338	389	cd11338, AmyAc_CMD, Alpha amylase catalytic domain	8e-29
cd11333	428	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase ca	4e-27
cd11313	336	cd11313, AmyAc_arch_bac_AmyA, Alpha amylase cataly	5e-26
cd11331	450	cd11331, AmyAc_OligoGlu_like, Alpha amylase cataly	1e-24
PRK10785	598	PRK10785, PRK10785, maltodextrin glucosidase; Prov	7e-23
cd11324	536	cd11324, AmyAc_Amylosucrase, Alpha amylase catalyt	1e-22
cd11359	456	cd11359, AmyAc_SLC3A1, Alpha amylase catalytic dom	2e-22
cd11330	472	cd11330, AmyAc_OligoGlu, Alpha amylase catalytic d	5e-22
TIGR02403	543	TIGR02403, trehalose_treC, alpha,alpha-phosphotreh	3e-21
cd11332	481	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalyti	8e-21
cd11320	389	cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase	9e-21
pfam00128	314	pfam00128, Alpha-amylase, Alpha amylase, catalytic	5e-20
cd11340	407	cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catal	2e-19
cd11339	344	cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catal	3e-18
cd11337	328	cd11337, AmyAc_CMD_like, Alpha amylase catalytic d	6e-17
cd11334	447	cd11334, AmyAc_TreS, Alpha amylase catalytic domai	7e-17
cd11316	403	cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic	8e-17
COG0366	505	COG0366, AmyA, Glycosidases [Carbohydrate transpor	9e-17
cd11353	366	cd11353, AmyAc_euk_bac_CMD_like, Alpha amylase cat	6e-16
cd11348	429	cd11348, AmyAc_2, Alpha amylase catalytic domain f	7e-16
cd11352	443	cd11352, AmyAc_5, Alpha amylase catalytic domain f	3e-15
PRK10933	551	PRK10933, PRK10933, trehalose-6-phosphate hydrolas	4e-14
cd11336	660	cd11336, AmyAc_MTSase, Alpha amylase catalytic dom	4e-14
PRK14507	1693	PRK14507, PRK14507, putative bifunctional 4-alpha-	5e-13
smart00642	166	smart00642, Aamy, Alpha-amylase domain	6e-13
PRK14510	1221	PRK14510, PRK14510, putative bifunctional 4-alpha-	8e-13
TIGR02456	539	TIGR02456, treS_nterm, trehalose synthase	9e-13
cd11354	357	cd11354, AmyAc_bac_CMD_like, Alpha amylase catalyt	5e-12
cd11343	445	cd11343, AmyAc_Sucrose_phosphorylase-like, Alpha a	5e-12
PRK14511	879	PRK14511, PRK14511, maltooligosyl trehalose syntha	1e-11
PRK09505	683	PRK09505, malS, alpha-amylase; Reviewed	2e-11
COG3280	889	COG3280, TreY, Maltooligosyl trehalose synthase [C	2e-11
TIGR02401	825	TIGR02401, trehalose_TreY, malto-oligosyltrehalose	3e-11
cd11338	389	cd11338, AmyAc_CMD, Alpha amylase catalytic domain	3e-10
cd11347	391	cd11347, AmyAc_1, Alpha amylase catalytic domain f	7e-10
cd11329	477	cd11329, AmyAc_maltase-like, Alpha amylase catalyt	1e-09
cd11356	458	cd11356, AmyAc_Sucrose_phosphorylase-like_1, Alpha	2e-09
cd11350	390	cd11350, AmyAc_4, Alpha amylase catalytic domain f	3e-09
cd11345	326	cd11345, AmyAc_SLC3A2, Alpha amylase catalytic dom	5e-09
cd11355	433	cd11355, AmyAc_Sucrose_phosphorylase, Alpha amylas	2e-08
cd11319	375	cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic d	3e-08
PRK10785	598	PRK10785, PRK10785, maltodextrin glucosidase; Prov	4e-08
cd11325	436	cd11325, AmyAc_GTHase, Alpha amylase catalytic dom	8e-08
PRK09441	479	PRK09441, PRK09441, cytoplasmic alpha-amylase; Rev	8e-08
cd11324	536	cd11324, AmyAc_Amylosucrase, Alpha amylase catalyt	1e-07
cd11349	456	cd11349, AmyAc_3, Alpha amylase catalytic domain f	1e-07
COG0296	628	COG0296, GlgB, 1,4-alpha-glucan branching enzyme [	1e-07
PRK12313	633	PRK12313, PRK12313, glycogen branching enzyme; Pro	2e-07
TIGR02100	688	TIGR02100, glgX_debranch, glycogen debranching enz	3e-07
TIGR03852	470	TIGR03852, sucrose_gtfA, sucrose phosphorylase	5e-07
TIGR02402	544	TIGR02402, trehalose_TreZ, malto-oligosyltrehalose	7e-07
cd11322	402	cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom	3e-06
cd11336	660	cd11336, AmyAc_MTSase, Alpha amylase catalytic dom	5e-06
cd11340	407	cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catal	6e-06
cd11335	538	cd11335, AmyAc_MTase_N, Alpha amylase catalytic do	6e-06
cd11315	352	cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic	6e-06
cd00551	260	cd00551, AmyAc_family, Alpha amylase catalytic dom	2e-05
PRK14511	879	PRK14511, PRK14511, maltooligosyl trehalose syntha	2e-05
cd11346	347	cd11346, AmyAc_plant_IsoA, Alpha amylase catalytic	2e-05
cd11320	389	cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase	3e-05
cd11337	328	cd11337, AmyAc_CMD_like, Alpha amylase catalytic d	3e-05
cd11318	391	cd11318, AmyAc_bac_fung_AmyA, Alpha amylase cataly	5e-05
cd11339	344	cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catal	7e-05
cd11326	433	cd11326, AmyAc_Glg_debranch, Alpha amylase catalyt	7e-05
cd11343	445	cd11343, AmyAc_Sucrose_phosphorylase-like, Alpha a	1e-04
TIGR02401	825	TIGR02401, trehalose_TreY, malto-oligosyltrehalose	1e-04
cd11329	477	cd11329, AmyAc_maltase-like, Alpha amylase catalyt	1e-04
PRK14705	1224	PRK14705, PRK14705, glycogen branching enzyme; Pro	1e-04
COG3280	889	COG3280, TreY, Maltooligosyl trehalose synthase [C	2e-04
cd11356	458	cd11356, AmyAc_Sucrose_phosphorylase-like_1, Alpha	2e-04
cd11314	302	cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase	2e-04
COG1523	697	COG1523, PulA, Type II secretory pathway, pullulan	3e-04
TIGR01515	618	TIGR01515, branching_enzym, alpha-1,4-glucan:alpha	4e-04
PRK13840	495	PRK13840, PRK13840, sucrose phosphorylase; Provisi	6e-04
cd11354	357	cd11354, AmyAc_bac_CMD_like, Alpha amylase catalyt	8e-04
PRK14706	639	PRK14706, PRK14706, glycogen branching enzyme; Pro	8e-04
cd11352	443	cd11352, AmyAc_5, Alpha amylase catalytic domain f	9e-04
cd11353	366	cd11353, AmyAc_euk_bac_CMD_like, Alpha amylase cat	0.001
cd11344	355	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic	0.002
PRK14507	1693	PRK14507, PRK14507, putative bifunctional 4-alpha-	0.004

>gnl|CDD|200467 cd11328, AmyAc_maltase, Alpha amylase catalytic domain found in maltase (also known as alpha glucosidase) and related proteins

 Score =  230 bits (589), Expect = 9e-74
 Identities = 71/122 (58%), Positives = 96/122 (78%), Gaps = 1/122 (0%)

Query: 34  PLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD 93
             +WW+ +VFY +YPRSFKDS+GDG+GDLKG+ EKL  +  D+G+ A+W+SPIFKSPM D
Sbjct: 1   DKDWWENAVFYQIYPRSFKDSDGDGIGDLKGITEKLD-YFKDIGIDAIWLSPIFKSPMVD 59

Query: 94  FGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPP 153
           FGYDISD+   +P+FG ++DFE L      LG+K++LDFVPNH+S++HEWF+KS+    P
Sbjct: 60  FGYDISDFTDIDPIFGTMEDFEELIAEAKKLGLKVILDFVPNHSSDEHEWFQKSVKRDEP 119

Query: 154 YK 155
           YK
Sbjct: 120 YK 121

Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. In most cases, maltase is equivalent to alpha-glucosidase, but the term "maltase" emphasizes the disaccharide nature of the substrate from which glucose is cleaved, and the term "alpha-glucosidase" emphasizes the bond, whether the substrate is a disaccharide or polysaccharide. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 470

>gnl|CDD|200472 cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins

 Score =  203 bits (520), Expect = 8e-64
 Identities = 64/117 (54%), Positives = 87/117 (74%), Gaps = 2/117 (1%)

Query: 39  QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDI 98
           + +V Y +YPRSFKDSNGDG+GDL G+I KL  +L DLGV A+W+SPI+ SP  D GYDI
Sbjct: 1   KEAVVYQIYPRSFKDSNGDGIGDLPGIISKLD-YLKDLGVDAIWLSPIYPSPQVDNGYDI 59

Query: 99  SDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANI-PPY 154
           SDY + +P FG ++DF+ L +  H  GIKI++D V NHTS++H WF++S ++   PY
Sbjct: 60  SDYRAIDPEFGTMEDFDELIKEAHKRGIKIIMDLVVNHTSDEHPWFQESRSSRDNPY 116

The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 428

>gnl|CDD|200470 cd11331, AmyAc_OligoGlu_like, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins

 Score =  200 bits (511), Expect = 2e-62
 Identities = 73/115 (63%), Positives = 92/115 (80%), Gaps = 1/115 (0%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
            WWQT V Y +YPRSF+DSNGDGVGDL+G+I +L  +L DLGV AVW+SPI+ SPMADFG
Sbjct: 1   LWWQTGVIYQIYPRSFQDSNGDGVGDLRGIISRLD-YLSDLGVDAVWLSPIYPSPMADFG 59

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
           YD+SDY   +PLFG L+DF+ L    HA G+K++LDFVPNHTS+QH WF +S ++
Sbjct: 60  YDVSDYCGIDPLFGTLEDFDRLVAEAHARGLKVILDFVPNHTSDQHPWFLESRSS 114

Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 450

>gnl|CDD|200469 cd11330, AmyAc_OligoGlu, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins

 Score =  199 bits (507), Expect = 2e-61
 Identities = 66/115 (57%), Positives = 88/115 (76%), Gaps = 1/115 (0%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
            WW+ +V Y +YPRSF DSNGDG+GDL G+ EKL  ++  LGV A+W+SP FKSPM DFG
Sbjct: 1   PWWRGAVIYQIYPRSFLDSNGDGIGDLPGITEKLD-YIASLGVDAIWLSPFFKSPMKDFG 59

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
           YD+SDY + +PLFG L DF+ L  R HALG+K+++D V +HTS+QH WF++S  +
Sbjct: 60  YDVSDYCAVDPLFGTLDDFDRLVARAHALGLKVMIDQVLSHTSDQHPWFEESRQS 114

Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 472

>gnl|CDD|200494 cd11359, AmyAc_SLC3A1, Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins

 Score =  193 bits (493), Expect = 1e-59
 Identities = 72/119 (60%), Positives = 93/119 (78%), Gaps = 1/119 (0%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           WWQTSV Y +YPRSFKDSNGDG GDLKG+ EKL ++L  LGV  VW+SPI+KSPM DFGY
Sbjct: 2   WWQTSVIYQIYPRSFKDSNGDGNGDLKGIREKL-DYLKYLGVKTVWLSPIYKSPMKDFGY 60

Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
           D+SD+   +P+FG ++DFE L   +H  G+K+++DFVPNHTS++HEWF+ S  +  PY 
Sbjct: 61  DVSDFTDIDPMFGTMEDFERLLAAMHDRGMKLIMDFVPNHTSDKHEWFQLSRNSTNPYT 119

SLC3A1, also called Neutral and basic amino acid transport protein rBAT or NBAT, plays a role in amino acid and cystine absorption. Mutations in the gene encoding SLC3A1 causes cystinuria, an autosomal recessive disorder characterized by the failure of proximal tubules to reabsorb filtered cystine and dibasic amino acids. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 456

>gnl|CDD|200471 cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins

 Score =  187 bits (476), Expect = 7e-57
 Identities = 63/117 (53%), Positives = 86/117 (73%), Gaps = 1/117 (0%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
            WW+ +V Y +YPRSF D+NGDG+GDL G+  +LP +L  LGV A+W+SP + SPMAD G
Sbjct: 1   PWWRDAVVYQVYPRSFADANGDGIGDLAGIRARLP-YLAALGVDAIWLSPFYPSPMADGG 59

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
           YD++DY   +PLFG L DF+ L    H LG+++++D VPNHTS+QH WF+ +LA  P
Sbjct: 60  YDVADYRDVDPLFGTLADFDALVAAAHELGLRVIVDIVPNHTSDQHPWFQAALAAGP 116

Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Trehalose synthase (EC 5.4.99.16) catalyzes the isomerization of maltose to produce trehalulose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 481

>gnl|CDD|233851 TIGR02403, trehalose_treC, alpha,alpha-phosphotrehalase

 Score =  179 bits (455), Expect = 2e-53
 Identities = 65/119 (54%), Positives = 82/119 (68%), Gaps = 1/119 (0%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           WWQ  V Y +YP+SF DS GDG GDL+G+IEKL ++L  LGV  +W++P + SP  D GY
Sbjct: 1   WWQKKVIYQIYPKSFYDSTGDGTGDLRGIIEKL-DYLKKLGVDYIWLNPFYVSPQKDNGY 59

Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
           D+SDY +  PLFG + DFE L        IKI+LD V NHTS +HEWFKK+LA   PY+
Sbjct: 60  DVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYR 118

Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. Length = 543

>gnl|CDD|200473 cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase

 Score =  163 bits (416), Expect = 2e-48
 Identities = 52/111 (46%), Positives = 73/111 (65%), Gaps = 1/111 (0%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           W++ +V Y L  R+F DSNGDG+GD +G+ EKL  +L  LGV A+W+ P + SP+ D GY
Sbjct: 1   WYKNAVIYQLDVRTFMDSNGDGIGDFRGLTEKLD-YLQWLGVTAIWLLPFYPSPLRDDGY 59

Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147
           DI+DY   +P  G L DF       H  GI++++D V NHTS+QH WF+ +
Sbjct: 60  DIADYYGVDPRLGTLGDFVEFLREAHERGIRVIIDLVVNHTSDQHPWFQAA 110

Trehalose synthetase (TreS) catalyzes the reversible interconversion of trehalose and maltose. The enzyme catalyzes the reaction in both directions, but the preferred substrate is maltose. Glucose is formed as a by-product of this reaction. It is believed that the catalytic mechanism may involve the cutting of the incoming disaccharide and transfer of a glucose to an enzyme-bound glucose. This enzyme also catalyzes production of a glucosamine disaccharide from maltose and glucosamine. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 447

>gnl|CDD|200455 cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)

 Score =  159 bits (405), Expect = 4e-47
 Identities = 56/114 (49%), Positives = 82/114 (71%), Gaps = 3/114 (2%)

Query: 42  VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDY 101
           VFY ++ RSF DS+GDG+GDL G+ EKL  +L+DLGV  +W+ PIF SP +  GYD++DY
Sbjct: 2   VFYEIFVRSFYDSDGDGIGDLNGLTEKLD-YLNDLGVNGIWLMPIFPSP-SYHGYDVTDY 59

Query: 102 LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANI-PPY 154
            + EP +G ++DFE L    H  GIK+++D V NHTS++H WF+++ ++   PY
Sbjct: 60  YAIEPDYGTMEDFERLIAEAHKRGIKVIIDLVINHTSSEHPWFQEAASSPDSPY 113

AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Chloroflexi, Dictyoglomi, and Fusobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 403

>gnl|CDD|200486 cd11348, AmyAc_2, Alpha amylase catalytic domain found in an uncharacterized protein family

 Score =  148 bits (377), Expect = 7e-43
 Identities = 54/106 (50%), Positives = 73/106 (68%), Gaps = 1/106 (0%)

Query: 42  VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDY 101
           VFY +YP+SF DSNGDG+GDL+G+I KL +++  LG  A+W++P F SP  D GYD+ DY
Sbjct: 1   VFYEIYPQSFYDSNGDGIGDLQGIISKL-DYIKSLGCNAIWLNPCFDSPFKDAGYDVRDY 59

Query: 102 LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147
               P +G  +D   L +  H  GI +LLD VP HTS++H WFK+S
Sbjct: 60  YKVAPRYGTNEDLVRLFDEAHKRGIHVLLDLVPGHTSDEHPWFKES 105

The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The catalytic triad (DED) is not present here. The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 429

>gnl|CDD|182849 PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional

 Score =  147 bits (373), Expect = 2e-41
 Identities = 54/122 (44%), Positives = 83/122 (68%), Gaps = 1/122 (0%)

Query: 34  PLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD 93
              WWQ  V Y +YP+SF+D+ G G GDL+G+ ++L ++L  LGV A+W++P + SP  D
Sbjct: 4   LPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRL-DYLQKLGVDAIWLTPFYVSPQVD 62

Query: 94  FGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPP 153
            GYD+++Y + +P +G L DF+ L  +  + GI+I+LD V NHTS QH WF+++L    P
Sbjct: 63  NGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESP 122

Query: 154 YK 155
           Y+
Sbjct: 123 YR 124

Length = 551

>gnl|CDD|223443 COG0366, AmyA, Glycosidases [Carbohydrate transport and metabolism]

 Score =  144 bits (364), Expect = 1e-40
 Identities = 63/121 (52%), Positives = 83/121 (68%), Gaps = 7/121 (5%)

Query: 41  SVFYHLYPRSFKDSNG------DGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF 94
           +V Y +YP  F DSNG      DG GDLKG+ EKL  +L +LGV A+W+SPIF+SP AD 
Sbjct: 1   AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLD-YLKELGVDAIWLSPIFESPQADH 59

Query: 95  GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
           GYD+SDY   +P FG  +DF+ L E  H  GIK++LD V NHTS++H WFK++ ++ P  
Sbjct: 60  GYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNP 119

Query: 155 K 155
           K
Sbjct: 120 K 120

Length = 505

>gnl|CDD|233874 TIGR02456, treS_nterm, trehalose synthase

 Score =  141 bits (358), Expect = 2e-39
 Identities = 54/116 (46%), Positives = 81/116 (69%), Gaps = 1/116 (0%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
            W++ +VFY ++ RSF DSNGDG+GD  G+  KL  +L  LGV A+W+ P F+SP+ D G
Sbjct: 1   LWYKDAVFYEVHVRSFFDSNGDGIGDFPGLTSKLD-YLKWLGVDALWLLPFFQSPLRDDG 59

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANI 151
           YD+SDY +  P FG + DF+   +  HA G+++++D V NHTS+QH WF+++ +N 
Sbjct: 60  YDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNP 115

Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PMID:15378530) [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 539

>gnl|CDD|214758 smart00642, Aamy, Alpha-amylase domain

 Score =  132 bits (335), Expect = 3e-39
 Identities = 54/96 (56%), Positives = 70/96 (72%), Gaps = 4/96 (4%)

Query: 47  YPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM---ADFGYDISDYLS 103
           YP  F D NGDG GDL+G+IEKL ++L DLGV A+W+SPIF+SP    +  GYDISDY  
Sbjct: 3   YPDRFADGNGDGGGDLQGIIEKL-DYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQ 61

Query: 104 FEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSN 139
            +P FG ++DF+ L +  HA GIK++LD V NHTS+
Sbjct: 62  IDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97

Length = 166

>gnl|CDD|215737 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain

 Score =  135 bits (342), Expect = 1e-38
 Identities = 50/97 (51%), Positives = 72/97 (74%), Gaps = 2/97 (2%)

Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119
           GDL+G+I+KL  +L DLGV A+W+SPIF SP +  GYDI+DY   +P FG + DF+ L +
Sbjct: 1   GDLQGIIDKLD-YLKDLGVTAIWLSPIFDSPQSYHGYDITDYYKIDPHFGTMDDFKELID 59

Query: 120 RLHALGIKILLDFVPNHTSNQHEWFKKSLANI-PPYK 155
           + H  GIK++LD VPNHTS++H WF++S ++   PY+
Sbjct: 60  KAHERGIKVILDLVPNHTSDEHAWFQESRSSKDNPYR 96

Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain. Length = 314

>gnl|CDD|200451 cd00551, AmyAc_family, Alpha amylase catalytic domain family

 Score =  113 bits (283), Expect = 1e-30
 Identities = 46/101 (45%), Positives = 61/101 (60%), Gaps = 7/101 (6%)

Query: 42  VFYHLYPRSFKDSN---GDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDI 98
           V Y L+P  F D +   GDG GDLKG+I+KL  +L DLGV A+W++PIF+SP  D     
Sbjct: 1   VIYQLFPDRFTDGDSSGGDGGGDLKGIIDKLD-YLKDLGVTAIWLTPIFESPEYDGYDKD 59

Query: 99  S---DYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
               DY   +P  G  +DF+ L +  H  GIK++LD V NH
Sbjct: 60  DGYLDYYEIDPRLGTEEDFKELVKAAHKRGIKVILDLVFNH 100

The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 260

>gnl|CDD|200477 cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins

 Score =  111 bits (279), Expect = 8e-29
 Identities = 39/91 (42%), Positives = 60/91 (65%), Gaps = 2/91 (2%)

Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119
           GDL+G+IEKL  +L DLGV A++++PIF++P ++  YD +DY   +P  G  +DF+ L E
Sbjct: 53  GDLQGIIEKLD-YLKDLGVNAIYLNPIFEAP-SNHKYDTADYFKIDPHLGTEEDFKELVE 110

Query: 120 RLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
             H  GI+++LD V NHT +   +F+  L  
Sbjct: 111 EAHKRGIRVILDGVFNHTGDDSPYFQDVLKY 141

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 389

>gnl|CDD|200472 cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins

 Score =  106 bits (268), Expect = 4e-27
 Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 23/84 (27%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
           L DLGV A+W+SPI+ SP  D GYDISDY  I                      KI++D 
Sbjct: 34  LKDLGVDAIWLSPIYPSPQVDNGYDISDYRAIDPEFGTMEDFDELIKEAHKRGIKIIMDL 93

Query: 201 VPNHTSNQHEWFKKSLANI-PPYS 223
           V NHTS++H WF++S ++   PY 
Sbjct: 94  VVNHTSDEHPWFQESRSSRDNPYR 117

The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 428

>gnl|CDD|200452 cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)

 Score =  102 bits (257), Expect = 5e-26
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 12/116 (10%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIF------KSP 90
           W + +V Y +  R F        G  K + + LP  L DLGV  +W+ PI       +  
Sbjct: 1   WLRDAVIYEVNVRQFTPE-----GTFKAVTKDLP-RLKDLGVDILWLMPIHPIGEKNRKG 54

Query: 91  MADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKK 146
                Y + DY +  P +G L+DF+ L +  H  G+K++LD+V NHT+  H   ++
Sbjct: 55  SLGSPYAVKDYRAVNPEYGTLEDFKALVDEAHDRGMKVILDWVANHTAWDHPLVEE 110

AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes firmicutes, bacteroidetes, and proteobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 336

>gnl|CDD|200470 cd11331, AmyAc_OligoGlu_like, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins

 Score =  100 bits (250), Expect = 1e-24
 Identities = 38/78 (48%), Positives = 48/78 (61%), Gaps = 22/78 (28%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDY----------------------LRIKILLDF 200
           L DLGV AVW+SPI+ SPMADFGYD+SDY                        +K++LDF
Sbjct: 37  LSDLGVDAVWLSPIYPSPMADFGYDVSDYCGIDPLFGTLEDFDRLVAEAHARGLKVILDF 96

Query: 201 VPNHTSNQHEWFKKSLAN 218
           VPNHTS+QH WF +S ++
Sbjct: 97  VPNHTSDQHPWFLESRSS 114

Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 450

>gnl|CDD|236759 PRK10785, PRK10785, maltodextrin glucosidase; Provisional

 Score = 95.8 bits (239), Expect = 7e-23
 Identities = 49/153 (32%), Positives = 67/153 (43%), Gaps = 38/153 (24%)

Query: 27  VDVPIQEPLEWWQTSVFYHLYPRSFKDSNG-----DGV---------------------- 59
           VDVP Q P +W    VFY ++P  F  S       D V                      
Sbjct: 109 VDVPDQGP-QWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQ 167

Query: 60  --------GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDL 111
                   GDL G+ EKLP +L  LGV A++++PIF +P +   YD  DY   +P  G  
Sbjct: 168 AGGSTFYGGDLDGISEKLP-YLKKLGVTALYLNPIFTAP-SVHKYDTEDYRHVDPQLGGD 225

Query: 112 KDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144
                L+      G++++LD V NHT + H WF
Sbjct: 226 AALLRLRHATQQRGMRLVLDGVFNHTGDSHPWF 258

Length = 598

>gnl|CDD|200463 cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found in Amylosucrase

 Score = 94.9 bits (237), Expect = 1e-22
 Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 3/97 (3%)

Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA--DFGYDISDYLSFEPLFGDLKDFETL 117
           GDLKG+ EK+P +L +LGV  + + P+ K P    D GY +SDY   +P  G ++D   L
Sbjct: 83  GDLKGLAEKIP-YLKELGVTYLHLMPLLKPPEGDNDGGYAVSDYREVDPRLGTMEDLRAL 141

Query: 118 KERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
              L   GI ++LDFV NHT+++HEW +K+ A  P Y
Sbjct: 142 AAELRERGISLVLDFVLNHTADEHEWAQKARAGDPEY 178

Amylosucrase is a glucosyltransferase that catalyzes the transfer of a D-glucopyranosyl moiety from sucrose onto an acceptor molecule. When the acceptor is another saccharide, only alpha-1,4 linkages are produced. Unlike most amylopolysaccharide synthases, it does not require any alpha-D-glucosyl nucleoside diphosphate substrate. In the presence of glycogen it catalyzes the transfer of a D-glucose moiety onto a glycogen branch, but in its absence, it hydrolyzes sucrose and synthesizes polymers, smaller maltosaccharides, and sucrose isoforms. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 536

>gnl|CDD|200494 cd11359, AmyAc_SLC3A1, Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins

 Score = 94.0 bits (234), Expect = 2e-22
 Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 22/82 (26%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
           L  LGV  VW+SPI+KSPM DFGYD+SD+  I                      K+++DF
Sbjct: 37  LKYLGVKTVWLSPIYKSPMKDFGYDVSDFTDIDPMFGTMEDFERLLAAMHDRGMKLIMDF 96

Query: 201 VPNHTSNQHEWFKKSLANIPPY 222
           VPNHTS++HEWF+ S  +  PY
Sbjct: 97  VPNHTSDKHEWFQLSRNSTNPY 118

SLC3A1, also called Neutral and basic amino acid transport protein rBAT or NBAT, plays a role in amino acid and cystine absorption. Mutations in the gene encoding SLC3A1 causes cystinuria, an autosomal recessive disorder characterized by the failure of proximal tubules to reabsorb filtered cystine and dibasic amino acids. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 456

>gnl|CDD|200469 cd11330, AmyAc_OligoGlu, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins

 Score = 93.1 bits (232), Expect = 5e-22
 Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 22/76 (28%)

Query: 165 DLGVGAVWISPIFKSPMADFGYDISDY----------------------LRIKILLDFVP 202
            LGV A+W+SP FKSPM DFGYD+SDY                      L +K+++D V 
Sbjct: 39  SLGVDAIWLSPFFKSPMKDFGYDVSDYCAVDPLFGTLDDFDRLVARAHALGLKVMIDQVL 98

Query: 203 NHTSNQHEWFKKSLAN 218
           +HTS+QH WF++S  +
Sbjct: 99  SHTSDQHPWFEESRQS 114

Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 472

>gnl|CDD|233851 TIGR02403, trehalose_treC, alpha,alpha-phosphotrehalase

 Score = 90.9 bits (226), Expect = 3e-21
 Identities = 35/82 (42%), Positives = 43/82 (52%), Gaps = 22/82 (26%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
           L  LGV  +W++P + SP  D GYD+SDY  I                      KI+LD 
Sbjct: 36  LKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95

Query: 201 VPNHTSNQHEWFKKSLANIPPY 222
           V NHTS +HEWFKK+LA   PY
Sbjct: 96  VFNHTSTEHEWFKKALAGDSPY 117

Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. Length = 543

>gnl|CDD|200471 cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins

 Score = 89.6 bits (223), Expect = 8e-21
 Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 22/80 (27%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDY----------------------LRIKILLDF 200
           L  LGV A+W+SP + SPMAD GYD++DY                      L +++++D 
Sbjct: 37  LAALGVDAIWLSPFYPSPMADGGYDVADYRDVDPLFGTLADFDALVAAAHELGLRVIVDI 96

Query: 201 VPNHTSNQHEWFKKSLANIP 220
           VPNHTS+QH WF+ +LA  P
Sbjct: 97  VPNHTSDQHPWFQAALAAGP 116

Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Trehalose synthase (EC 5.4.99.16) catalyzes the isomerization of maltose to produce trehalulose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 481

>gnl|CDD|200459 cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase catalytic domain found in maltogenic amylases, cyclodextrin glycosyltransferase, and related proteins

 Score = 88.9 bits (221), Expect = 9e-21
 Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 10/88 (11%)

Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFK---SPMADF------GYDISDYLSFEPLFGD 110
           GD +G+I+KLP +L DLGV A+WISP  +   SP+         GY   D+      FG 
Sbjct: 44  GDWQGIIDKLP-YLKDLGVTAIWISPPVENINSPIEGGGNTGYHGYWARDFKRTNEHFGT 102

Query: 111 LKDFETLKERLHALGIKILLDFVPNHTS 138
            +DF+ L +  HA GIK+++DFVPNH+S
Sbjct: 103 WEDFDELVDAAHANGIKVIIDFVPNHSS 130

Enzymes such as amylases, cyclomaltodextrinase (CDase), and cyclodextrin glycosyltransferase (CGTase) degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs), consisting of six, seven, or eight glucose residues, respectively. CGTases are characterized depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The maltogenic alpha-amylase from Bacillus is a five-domain structure, unlike most alpha-amylases, but similar to that of cyclodextrin glycosyltransferase. In addition to the A, B, and C domains, they have a domain D and a starch-binding domain E. Maltogenic amylase is an endo-acting amylase that has activity on cyclodextrins, terminally modified linear maltodextrins, and amylose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 389

>gnl|CDD|215737 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain

 Score = 86.2 bits (214), Expect = 5e-20
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 23/84 (27%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDF 200
           L DLGV A+W+SPIF SP +  GYDI+DY +                      IK++LD 
Sbjct: 13  LKDLGVTAIWLSPIFDSPQSYHGYDITDYYKIDPHFGTMDDFKELIDKAHERGIKVILDL 72

Query: 201 VPNHTSNQHEWFKKSLANI-PPYS 223
           VPNHTS++H WF++S ++   PY 
Sbjct: 73  VPNHTSDEHAWFQESRSSKDNPYR 96

Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain. Length = 314

>gnl|CDD|200479 cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins

 Score = 85.3 bits (212), Expect = 2e-19
 Identities = 34/89 (38%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF---GYDISDYLSFEPLFGDLKDFET 116
           GD++G+I+ L ++L DLGV A+W++P+ ++ M  +   GY  +D+   +P FG  +D++ 
Sbjct: 42  GDIQGIIDHL-DYLQDLGVTAIWLTPLLENDMPSYSYHGYAATDFYRIDPRFGSNEDYKE 100

Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFK 145
           L  + HA G+K+++D VPNH  ++H W K
Sbjct: 101 LVSKAHARGMKLIMDMVPNHCGSEHWWMK 129

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 407

>gnl|CDD|200478 cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins

 Score = 81.5 bits (202), Expect = 3e-18
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 7/86 (8%)

Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-----ADF-GYDISDYLSFEPLFGDLKD 113
           GD KG+I+KL  ++ DLG  A+WI+P+ K+       A + GY   D+   +P  G   D
Sbjct: 42  GDFKGLIDKLD-YIKDLGFTAIWITPVVKNRSVQAGSAGYHGYWGYDFYRIDPHLGTDAD 100

Query: 114 FETLKERLHALGIKILLDFVPNHTSN 139
            + L +  HA GIK++LD V NHT +
Sbjct: 101 LQDLIDAAHARGIKVILDIVVNHTGD 126

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 344

>gnl|CDD|200476 cd11337, AmyAc_CMD_like, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins

 Score = 77.6 bits (192), Expect = 6e-17
 Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 9/108 (8%)

Query: 42  VFYHLYPRSF------KDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
           +FYH+YP  F       D +G     L  + + LP HL +LG  A+++ P+F+S     G
Sbjct: 1   IFYHIYPLGFCGAPIRNDFDGPPEHRLLKLEDWLP-HLKELGCNALYLGPVFES--DSHG 57

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEW 143
           YD  DY   +   G  +DF+ L   LH  GI+++LD V NH      W
Sbjct: 58  YDTRDYYRIDRRLGTNEDFKALVAALHERGIRVVLDGVFNHVGRDFFW 105

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is mainly bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 328

>gnl|CDD|200473 cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase

 Score = 78.4 bits (194), Expect = 7e-17
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 22/75 (29%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDF 200
           L  LGV A+W+ P + SP+ D GYDI+DY                        I++++D 
Sbjct: 36  LQWLGVTAIWLLPFYPSPLRDDGYDIADYYGVDPRLGTLGDFVEFLREAHERGIRVIIDL 95

Query: 201 VPNHTSNQHEWFKKS 215
           V NHTS+QH WF+ +
Sbjct: 96  VVNHTSDQHPWFQAA 110

Trehalose synthetase (TreS) catalyzes the reversible interconversion of trehalose and maltose. The enzyme catalyzes the reaction in both directions, but the preferred substrate is maltose. Glucose is formed as a by-product of this reaction. It is believed that the catalytic mechanism may involve the cutting of the incoming disaccharide and transfer of a glucose to an enzyme-bound glucose. This enzyme also catalyzes production of a glucosamine disaccharide from maltose and glucosamine. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 447

>gnl|CDD|200455 cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)

 Score = 78.0 bits (193), Expect = 8e-17
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 24/83 (28%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDF 200
           L+DLGV  +W+ PIF SP +  GYD++DY                        IK+++D 
Sbjct: 32  LNDLGVNGIWLMPIFPSP-SYHGYDVTDYYAIEPDYGTMEDFERLIAEAHKRGIKVIIDL 90

Query: 201 VPNHTSNQHEWFKKSLANI-PPY 222
           V NHTS++H WF+++ ++   PY
Sbjct: 91  VINHTSSEHPWFQEAASSPDSPY 113

AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Chloroflexi, Dictyoglomi, and Fusobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 403

>gnl|CDD|223443 COG0366, AmyA, Glycosidases [Carbohydrate transport and metabolism]

 Score = 78.1 bits (192), Expect = 9e-17
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 22/85 (25%)

Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKIL 197
           L  L +LGV A+W+SPIF+SP AD GYD+SDY +                      IK++
Sbjct: 35  LDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVI 94

Query: 198 LDFVPNHTSNQHEWFKKSLANIPPY 222
           LD V NHTS++H WFK++ ++ P  
Sbjct: 95  LDLVFNHTSDEHPWFKEARSSKPNP 119

Length = 505

>gnl|CDD|200490 cd11353, AmyAc_euk_bac_CMD_like, Alpha amylase catalytic domain found in eukaryotic and bacterial cyclomaltodextrinases and related proteins

 Score = 74.9 bits (185), Expect = 6e-16
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 11/104 (10%)

Query: 41  SVFYHLYPRSF----KDSNGDGVGDLKGMIEKLPE---HLHDLGVGAVWISPIFKSPMAD 93
           +VFYH+YP  F    K+++ DG    +  I KL +   HL  LG+ A++  P+F+S    
Sbjct: 2   AVFYHIYPLGFCGAPKENDFDGE--TEHRILKLEDWIPHLKKLGINAIYFGPVFES--DS 57

Query: 94  FGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT 137
            GYD  DY   +   G  +DF+ + ++LH  GIK++LD V NH 
Sbjct: 58  HGYDTRDYYKIDRRLGTNEDFKAVCKKLHENGIKVVLDGVFNHV 101

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is mainly bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 366

>gnl|CDD|200486 cd11348, AmyAc_2, Alpha amylase catalytic domain found in an uncharacterized protein family

 Score = 75.4 bits (186), Expect = 7e-16
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 22/75 (29%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDF 200
           +  LG  A+W++P F SP  D GYD+ DY +                      I +LLD 
Sbjct: 31  IKSLGCNAIWLNPCFDSPFKDAGYDVRDYYKVAPRYGTNEDLVRLFDEAHKRGIHVLLDL 90

Query: 201 VPNHTSNQHEWFKKS 215
           VP HTS++H WFK+S
Sbjct: 91  VPGHTSDEHPWFKES 105

The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The catalytic triad (DED) is not present here. The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 429

>gnl|CDD|200489 cd11352, AmyAc_5, Alpha amylase catalytic domain found in an uncharacterized protein family

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 4/83 (4%)

Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD---FGYDISDYLSFEPLFGDLKDFET 116
           G LKG+  KL  +L  LGV A+W+SP+FK         GY I ++L  +P FG  +D   
Sbjct: 47  GTLKGVRSKL-GYLKRLGVTALWLSPVFKQRPELETYHGYGIQNFLDVDPRFGTREDLRD 105

Query: 117 LKERLHALGIKILLDFVPNHTSN 139
           L +  HA GI ++LD + NH+ +
Sbjct: 106 LVDAAHARGIYVILDIILNHSGD 128

The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 443

>gnl|CDD|182849 PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional

 Score = 70.2 bits (172), Expect = 4e-14
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 22/82 (26%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYL----------------------RIKILLDF 200
           L  LGV A+W++P + SP  D GYD+++Y                        I+I+LD 
Sbjct: 42  LQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101

Query: 201 VPNHTSNQHEWFKKSLANIPPY 222
           V NHTS QH WF+++L    PY
Sbjct: 102 VFNHTSTQHAWFREALNKESPY 123

Length = 551

>gnl|CDD|200475 cd11336, AmyAc_MTSase, Alpha amylase catalytic domain found in maltooligosyl trehalose synthase (MTSase)

 Score = 70.2 bits (173), Expect = 4e-14
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 72  HLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130
           +L DLG+  ++ SPI  + P +  GYD+ D+    P  G  +    L   L A G+ ++L
Sbjct: 22  YLADLGISHLYASPILTARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLIL 81

Query: 131 DFVPNH 136
           D VPNH
Sbjct: 82  DIVPNH 87

Maltooligosyl trehalose synthase (MTSase) domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 660

>gnl|CDD|237737 PRK14507, PRK14507, putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional

 Score = 67.4 bits (165), Expect = 5e-13
 Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 65  MIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHA 123
               LP +L  LG+  V+ SPI K+ P +  GYDI D+    P  G  + FE     L A
Sbjct: 760 AEAILP-YLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKA 818

Query: 124 LGIKILLDFVPNH---TSNQHEWFKKSLANIPPYKCAS 158
            G+  LLD VPNH       + W+   L N P    A 
Sbjct: 819 HGLGQLLDIVPNHMGVGGADNPWWLDVLENGPASPAAD 856

Length = 1693

>gnl|CDD|214758 smart00642, Aamy, Alpha-amylase domain

 Score = 63.9 bits (156), Expect = 6e-13
 Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 25/70 (35%)

Query: 163 LHDLGVGAVWISPIFKSPM---ADFGYDISDYLR----------------------IKIL 197
           L DLGV A+W+SPIF+SP    +  GYDISDY +                      IK++
Sbjct: 28  LKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVI 87

Query: 198 LDFVPNHTSN 207
           LD V NHTS+
Sbjct: 88  LDVVINHTSD 97

Length = 166

>gnl|CDD|237739 PRK14510, PRK14510, putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional

 Score = 66.8 bits (163), Expect = 8e-13
 Identities = 41/171 (23%), Positives = 64/171 (37%), Gaps = 28/171 (16%)

Query: 38  WQTSVFYHLYPRSFKDSNGDGVG-DLKGMIEKLPE-----HLHDLGVGAVWISPIFKS-- 89
           W  S  Y +  R F     D    +L+G   KL       +L  LGV  V ++PIF S  
Sbjct: 156 WDDSPLYEMNVRGFT-LRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVD 214

Query: 90  --------PMADFGYDISDYLSFEPLFG--DLKDFETLKERLHALGIKILLDFVPNHT-S 138
                       +GY+   +L+ +P       ++F    +   + GI ++LD V NHT  
Sbjct: 215 EHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGE 274

Query: 139 NQHE---WFKKSLANIPPYKCASLLARLH--DLGVG---AVWISPIFKSPM 181
           + H           N P Y+      + +    G G    +    I + PM
Sbjct: 275 SNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPM 325

Length = 1221

>gnl|CDD|233874 TIGR02456, treS_nterm, trehalose synthase

 Score = 66.3 bits (162), Expect = 9e-13
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 22/84 (26%)

Query: 158 SLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------K 195
           S L  L  LGV A+W+ P F+SP+ D GYD+SDY  I                      +
Sbjct: 32  SKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMR 91

Query: 196 ILLDFVPNHTSNQHEWFKKSLANI 219
           +++D V NHTS+QH WF+++ +N 
Sbjct: 92  VIIDLVLNHTSDQHPWFQEARSNP 115

Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PMID:15378530) [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 539

>gnl|CDD|200491 cd11354, AmyAc_bac_CMD_like, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 16/124 (12%)

Query: 37  WWQTSVFYHLYPRSF-------KDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS 89
           WW      H+YP  F       ++        L  +   L  +  +LG   + + P+F+S
Sbjct: 4   WW------HVYPLGFVGAPIRPREPEAAVEHRLDRLEPWLD-YAVELGCNGLLLGPVFES 56

Query: 90  PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLA 149
             A  GYD  D+   +P  GD +DF+ L    H  G+++LLD V NH    H    ++L 
Sbjct: 57  --ASHGYDTLDHYRIDPRLGDDEDFDALIAAAHERGLRVLLDGVFNHVGRSHPAVAQALE 114

Query: 150 NIPP 153
           + P 
Sbjct: 115 DGPG 118

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 357

>gnl|CDD|200481 cd11343, AmyAc_Sucrose_phosphorylase-like, Alpha amylase catalytic domain found in sucrose phosphorylase (also called sucrose glucosyltransferase, disaccharide glucosyltransferase, and sucrose-phosphate alpha-D glucosyltransferase)

 Score = 64.1 bits (157), Expect = 5e-12
 Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 10/109 (9%)

Query: 47  YPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEP 106
           Y  S      +G   LK + + L EHL    +G V I P F    +D G+ + DY   +P
Sbjct: 9   YGDSLGR---EGEKPLKTLNKFLDEHLKGA-IGGVHILPFFPY-SSDDGFSVIDYTEVDP 63

Query: 107 LFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
             GD  D E L E        ++ D V NH S+Q  WF+  LA   P K
Sbjct: 64  RLGDWDDIEALAEDY-----DLMFDLVINHISSQSPWFQDFLAGGDPSK 107

Sucrose phosphorylase is a bacterial enzyme that catalyzes the phosphorolysis of sucrose to yield glucose-1-phosphate and fructose. These enzymes do not have the conserved calcium ion present in other alpha amylase family enzymes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 445

>gnl|CDD|237740 PRK14511, PRK14511, maltooligosyl trehalose synthase; Provisional

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 66  IEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHAL 124
            E +P +  DLGV  +++SPI  + P +  GYD+ D+    P  G  +    L   L A 
Sbjct: 23  AELVP-YFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAH 81

Query: 125 GIKILLDFVPNH 136
           G+ ++LD VPNH
Sbjct: 82  GMGLILDIVPNH 93

Length = 879

>gnl|CDD|236543 PRK09505, malS, alpha-amylase; Reviewed

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 15/93 (16%)

Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKS--------PMADF------GYDISDYLSFE 105
           GDL+G+ EKL ++L  LGV A+WIS   +            DF      GY   D+   +
Sbjct: 227 GDLRGLTEKL-DYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLD 285

Query: 106 PLFGDLKDFETLKERLHALGIKILLDFVPNHTS 138
              G   D  TL +  H  GI+IL D V NHT 
Sbjct: 286 ANMGTEADLRTLVDEAHQRGIRILFDVVMNHTG 318

Length = 683

>gnl|CDD|225819 COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 66  IEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHAL 124
              L  +L DLG+  +++SPIF + P +  GYD+ D     P  G  +  E L   L + 
Sbjct: 22  RALLD-YLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSR 80

Query: 125 GIKILLDFVPNH 136
           G+ +++D VPNH
Sbjct: 81  GLGLIVDIVPNH 92

Length = 889

>gnl|CDD|233849 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 67  EKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALG 125
             L  +L  LGV  +++SPI  + P +  GYD+ D+    P  G  +    L E   A G
Sbjct: 19  AALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARG 78

Query: 126 IKILLDFVPNH 136
           + +++D VPNH
Sbjct: 79  LGLIVDIVPNH 89

This enzyme, formally named (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 825

>gnl|CDD|200477 cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins

 Score = 58.6 bits (143), Expect = 3e-10
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 23/78 (29%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
           L DLGV A++++PIF++P ++  YD +DY +I                      +++LD 
Sbjct: 65  LKDLGVNAIYLNPIFEAP-SNHKYDTADYFKIDPHLGTEEDFKELVEEAHKRGIRVILDG 123

Query: 201 VPNHTSNQHEWFKKSLAN 218
           V NHT +   +F+  L  
Sbjct: 124 VFNHTGDDSPYFQDVLKY 141

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 389

>gnl|CDD|200485 cd11347, AmyAc_1, Alpha amylase catalytic domain found in an uncharacterized protein family

 Score = 57.6 bits (140), Expect = 7e-10
 Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEW 143
           Y I+DY +  P  G   D   L+ERL A G+K++LDFVPNH +  H W
Sbjct: 87  YAITDY-TVNPDLGGEDDLAALRERLAARGLKLMLDFVPNHVALDHPW 133

The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 391

>gnl|CDD|200468 cd11329, AmyAc_maltase-like, Alpha amylase catalytic domain family found in maltase

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 36/129 (27%), Positives = 50/129 (38%), Gaps = 33/129 (25%)

Query: 33  EPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK---S 89
            PL+WWQ      L   SF                       +  V A+           
Sbjct: 61  VPLKWWQKGPLVELDTESF---------------------FKEEHVEAISKLGAKGVIYE 99

Query: 90  PMADFGYDISDYLSFEPLFGDLKDF-ETLKERLHALGIKILLDFVPNHTSNQHEWFKKSL 148
             AD  Y  + Y     +  DLK+  +T K++     IK++LD  PNH+S QH  FK S+
Sbjct: 100 LPADETYLNNSY----GVESDLKELVKTAKQK----DIKVILDLTPNHSSKQHPLFKDSV 151

Query: 149 ANIPPYKCA 157
              PPY+ A
Sbjct: 152 LKEPPYRSA 160

Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. The catalytic triad (DED) which is highly conserved in the other maltase group is not present in this subfamily. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 477

>gnl|CDD|200493 cd11356, AmyAc_Sucrose_phosphorylase-like_1, Alpha amylase catalytic domain found in sucrose phosphorylase-like proteins (also called sucrose glucosyltransferase, disaccharide glucosyltransferase, and sucrose-phosphate alpha-D glucosyltransferase)

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 69  LPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKI 128
           L EHL D  +  V I P F    +D G+ + DY    P  GD +D E L +       ++
Sbjct: 30  LKEHLKDT-ISGVHILPFFPYS-SDDGFSVIDYRQVNPELGDWEDIEALAKDF-----RL 82

Query: 129 LLDFVPNHTSNQHEWFKKSLANIPPYK 155
           + D V NH S+   WF++ LA  PPYK
Sbjct: 83  MFDLVINHVSSSSPWFQQFLAGEPPYK 109

Sucrose phosphorylase is a bacterial enzyme that catalyzes the phosphorolysis of sucrose to yield glucose-1-phosphate and fructose. These enzymes do not have the conserved calcium ion present in other alpha amylase family enzymes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 458

>gnl|CDD|200488 cd11350, AmyAc_4, Alpha amylase catalytic domain found in an uncharacterized protein family

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 42  VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA-DFGYDISD 100
           V Y L  R F        GD KG+I+KL  +L DLGV A+ + P+ + P    +GY+   
Sbjct: 17  VIYELLVRDF-----TERGDFKGVIDKLD-YLQDLGVNAIELMPVQEFPGNDSWGYNPRH 70

Query: 101 YLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQH 141
           Y + +  +G  +D + L +  H  GI ++LD V NH   Q 
Sbjct: 71  YFALDKAYGTPEDLKRLVDECHQRGIAVILDVVYNHAEGQS 111

The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 390

>gnl|CDD|200483 cd11345, AmyAc_SLC3A2, Alpha amylase catalytic domain found in solute carrier family 3 member 2 proteins

 Score = 54.8 bits (132), Expect = 5e-09
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 11/123 (8%)

Query: 30  PIQEPLEWWQTSVFYHLY-PRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK 88
           PI E + WW     Y +   ++F ++ G     LKG+  KL ++L  L V  + + PI  
Sbjct: 6   PIPE-MNWWNEGPLYQIGDLQAFSEAGG-----LKGVEGKL-DYLSQLKVKGLVLGPIHV 58

Query: 89  SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSL 148
                 G    +    +P  G L+DF +L    H  GI ++LD  PN+      W     
Sbjct: 59  VQADQPG--ELNLTEIDPDLGTLEDFTSLLTAAHKKGISVVLDLTPNYRGES-SWAFSDA 115

Query: 149 ANI 151
            N+
Sbjct: 116 ENV 118

4F2 cell-surface antigen heavy chain (hc) is a protein that in humans is encoded by the SLC3A2 gene. 4F2hc is a multifunctional type II membrane glycoprotein involved in amino acid transport and cell fusion, adhesion, and transformation. It is related to bacterial alpha-glycosidases, but lacks alpha-glycosidase activity. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 326

>gnl|CDD|200492 cd11355, AmyAc_Sucrose_phosphorylase, Alpha amylase catalytic domain found in sucrose phosphorylase (also called sucrose glucosyltransferase, disaccharide glucosyltransferase, and sucrose-phosphate alpha-D glucosyltransferase)

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119
           G+LK +   L  +   +  G V I P F     D G+D  DY   +P FG   D E L E
Sbjct: 15  GNLKDLNTVLDTYFKGV-FGGVHILPFF-PSSDDRGFDPIDYTEVDPRFGTWDDIEALGE 72

Query: 120 RLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
                   ++ D + NH S Q  +F+  LA 
Sbjct: 73  DYE-----LMADLMVNHISAQSPYFQDFLAK 98

Sucrose phosphorylase is a bacterial enzyme that catalyzes the phosphorolysis of sucrose to yield glucose-1-phosphate and fructose. These enzymes do not have the conserved calcium ion present in other alpha amylase family enzymes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 433

>gnl|CDD|200458 cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic domain found in eukaryotic Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFK-------SPMADFGYDISDYLSFEPLFGDLK 112
           G  KG+I KL +++  +G  A+WISPI K          A  GY   D  S  P FG   
Sbjct: 40  GTWKGIINKL-DYIQGMGFDAIWISPIVKNIEGNTAYGEAYHGYWAQDLYSLNPHFGTAD 98

Query: 113 DFETLKERLHALGIKILLDFVPNH 136
           D + L + LH  G+ +++D V NH
Sbjct: 99  DLKALSKALHKRGMYLMVDVVVNH 122

AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes eukaryotic alpha-amylases including proteins from fungi, sponges, and protozoans. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 375

>gnl|CDD|236759 PRK10785, PRK10785, maltodextrin glucosidase; Provisional

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 23/72 (31%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
           L  LGV A++++PIF +P +   YD  DY  +                      +++LD 
Sbjct: 188 LKKLGVTALYLNPIFTAP-SVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246

Query: 201 VPNHTSNQHEWF 212
           V NHT + H WF
Sbjct: 247 VFNHTGDSHPWF 258

Length = 598

>gnl|CDD|200464 cd11325, AmyAc_GTHase, Alpha amylase catalytic domain found in Glycosyltrehalose trehalohydrolase (also called Maltooligosyl trehalose Trehalohydrolase)

 Score = 51.4 bits (124), Expect = 8e-08
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 23/108 (21%)

Query: 38  WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF--- 94
            +  V Y L+  +F        G     IE+L  +L DLGV A+ + P+     A+F   
Sbjct: 35  LEELVIYELHVGTF-----TPEGTFDAAIERLD-YLADLGVTAIELMPV-----AEFPGE 83

Query: 95  ---GYDISDYLSFEPLFG---DLKDFETLKERLHALGIKILLDFVPNH 136
              GYD     + E  +G   DLK    +    H  G+ ++LD V NH
Sbjct: 84  RNWGYDGVLPFAPESSYGGPDDLKRL--VDA-AHRRGLAVILDVVYNH 128

Glycosyltrehalose trehalohydrolase (GTHase) was discovered as part of a coupled system for the production of trehalose from soluble starch. In the first half of the reaction, glycosyltrehalose synthase (GTSase), an intramolecular glycosyl transferase, converts the glycosidic bond between the last two glucose residues of amylose from an alpha-1,4 bond to an alpha-1,1 bond, making a non-reducing glycosyl trehaloside. In the second half of the reaction, GTHase cleaves the alpha-1,4 glycosidic bond adjacent to the trehalose moiety to release trehalose and malto-oligosaccharide. Like isoamylase and other glycosidases that recognize branched oligosaccharides, GTHase contains an N-terminal extension and does not have the conserved calcium ion present in other alpha amylase family enzymes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Glycosyltrehalose Trehalohydrolase Maltooligosyltrehalose Trehalohydrolase. Length = 436

>gnl|CDD|236518 PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed

 Score = 51.4 bits (124), Expect = 8e-08
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 14/92 (15%)

Query: 67  EKLPEHLHDLGVGAVWISPIFK--SPMADFGYDISDYLSF---------EPLFGDLKDFE 115
           E+ P  L + G+ AVW+ P +K  S   D GY + D                +G  ++  
Sbjct: 26  ERAP-ELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELL 84

Query: 116 TLKERLHALGIKILLDFVPNHTSN--QHEWFK 145
              + LH  GIK+  D V NH +   + E F+
Sbjct: 85  NAIDALHENGIKVYADVVLNHKAGADEKETFR 116

Length = 479

>gnl|CDD|200463 cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found in Amylosucrase

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 24/84 (28%)

Query: 163 LHDLGVGAVWISPIFKSPMA--DFGYDISDY-------------------LR---IKILL 198
           L +LGV  + + P+ K P    D GY +SDY                   LR   I ++L
Sbjct: 95  LKELGVTYLHLMPLLKPPEGDNDGGYAVSDYREVDPRLGTMEDLRALAAELRERGISLVL 154

Query: 199 DFVPNHTSNQHEWFKKSLANIPPY 222
           DFV NHT+++HEW +K+ A  P Y
Sbjct: 155 DFVLNHTADEHEWAQKARAGDPEY 178

Amylosucrase is a glucosyltransferase that catalyzes the transfer of a D-glucopyranosyl moiety from sucrose onto an acceptor molecule. When the acceptor is another saccharide, only alpha-1,4 linkages are produced. Unlike most amylopolysaccharide synthases, it does not require any alpha-D-glucosyl nucleoside diphosphate substrate. In the presence of glycogen it catalyzes the transfer of a D-glucose moiety onto a glycogen branch, but in its absence, it hydrolyzes sucrose and synthesizes polymers, smaller maltosaccharides, and sucrose isoforms. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 536

>gnl|CDD|200487 cd11349, AmyAc_3, Alpha amylase catalytic domain found in an uncharacterized protein family

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 39/136 (28%)

Query: 42  VFYHLYPRSFKDSNG----------DGVGDLKGMIEKLPEHLHDLGVGAVW--------- 82
           + Y L PR F + N           +GVG      +   + +  LG   VW         
Sbjct: 2   IIYQLLPRLFGNKNTTNIPNGTIEENGVGKFNDFDDTALKEIKSLGFTHVWYTGVIRHAT 61

Query: 83  --------ISP----IFK----SPMA--DFGYDISDYLSFEPLFGDLKDFETLKERLHAL 124
                   I P    I K    SP A  D+ YD+   L+ +P    +++FE L ER HA 
Sbjct: 62  QTDYSAYGIPPDDPDIVKGRAGSPYAIKDY-YDVDPDLATDPT-NRMEEFEALVERTHAA 119

Query: 125 GIKILLDFVPNHTSNQ 140
           G+K+++DFVPNH + Q
Sbjct: 120 GLKVIIDFVPNHVARQ 135

The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 456

>gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 4/102 (3%)

Query: 38  WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGY 96
           W+  V Y L+  SF       +G  +  IE LP +L +LG+  + + P+ + P    +GY
Sbjct: 142 WEPIVIYELHVGSFTP--DRFLGYFELAIELLP-YLKELGITHIELMPVAEHPGDRSWGY 198

Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS 138
             + Y +    +G  +DF+ L +  H  GI ++LD+VPNH  
Sbjct: 199 QGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFP 240

Length = 628

>gnl|CDD|237052 PRK12313, PRK12313, glycogen branching enzyme; Provisional

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 65  MIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFETLKERLHA 123
           + ++L  ++ ++G   V   P+ + P+   +GY ++ Y +    +G  +DF  L + LH 
Sbjct: 172 LADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQ 231

Query: 124 LGIKILLDFVPNH-TSNQH 141
            GI ++LD+VP H   +  
Sbjct: 232 NGIGVILDWVPGHFPKDDD 250

Length = 633

>gnl|CDD|131155 TIGR02100, glgX_debranch, glycogen debranching enzyme GlgX

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 18/118 (15%)

Query: 38  WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLP-----EHLHDLGVGAVWISPIFKSPMA 92
           W+ ++ Y  + + F   + D   +L+G    L      ++L  LGV AV + P+      
Sbjct: 153 WEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDD 212

Query: 93  DF----------GYDISDYLSFEPLF---GDLKDFETLKERLHALGIKILLDFVPNHT 137
                       GY+   + + EP +   G + +F+T+   LH  GI+++LD V NHT
Sbjct: 213 RHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHT 270

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 688

>gnl|CDD|163564 TIGR03852, sucrose_gtfA, sucrose phosphorylase

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 10/101 (9%)

Query: 50  SFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFG 109
           ++ DS G  + +L  ++E    +  D  VG V + P F S   D G+   DY   +P FG
Sbjct: 7   TYADSLGKNLKELNKVLEN---YFKD-AVGGVHLLPFFPST-GDRGFAPMDYTEVDPAFG 61

Query: 110 DLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
           D  D E L E+ +     ++ DF+ NH S Q E+++  L  
Sbjct: 62  DWSDVEALSEKYY-----LMFDFMINHISRQSEYYQDFLEK 97

In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism. Length = 470

>gnl|CDD|233850 TIGR02402, trehalose_TreZ, malto-oligosyltrehalose trehalohydrolase

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 9/101 (8%)

Query: 38  WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA-DFGY 96
            + +V Y L+  +F        G     IEKLP +L DLG+ A+ + P+ + P    +GY
Sbjct: 91  LEEAVIYELHVGTFTPE-----GTFDAAIEKLP-YLADLGITAIELMPVAQFPGTRGWGY 144

Query: 97  D-ISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
           D +  Y   E  +G   D + L +  H LG+ +LLD V NH
Sbjct: 145 DGVLPYAPHEA-YGGPDDLKALVDAAHGLGLGVLLDVVYNH 184

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 544

>gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme)

 Score = 46.7 bits (112), Expect = 3e-06
 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 44  YHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYL 102
           Y ++  S+K          + + ++L  ++ ++G   V + P+ + P    +GY ++ Y 
Sbjct: 39  YEVHLGSWKRKEDGRFLSYRELADELIPYVKEMGYTHVELMPVMEHPFDGSWGYQVTGYF 98

Query: 103 SFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
           +    +G   DF+   +  H  GI ++LD+VP H
Sbjct: 99  APTSRYGTPDDFKYFVDACHQAGIGVILDWVPGH 132

The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402

>gnl|CDD|200475 cd11336, AmyAc_MTSase, Alpha amylase catalytic domain found in maltooligosyl trehalose synthase (MTSase)

 Score = 46.3 bits (111), Expect = 5e-06
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 23/71 (32%)

Query: 157 ASLLARLHDLGVGAVWISPIFKS-PMADFGYDISDYLRI--------------------- 194
           A+L+  L DLG+  ++ SPI  + P +  GYD+ D+ RI                     
Sbjct: 17  AALVPYLADLGISHLYASPILTARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHG 76

Query: 195 -KILLDFVPNH 204
             ++LD VPNH
Sbjct: 77  MGLILDIVPNH 87

Maltooligosyl trehalose synthase (MTSase) domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 660

>gnl|CDD|200479 cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 25/76 (32%)

Query: 163 LHDLGVGAVWISPIFKSPMADF---GYDISDYLRI----------------------KIL 197
           L DLGV A+W++P+ ++ M  +   GY  +D+ RI                      K++
Sbjct: 54  LQDLGVTAIWLTPLLENDMPSYSYHGYAATDFYRIDPRFGSNEDYKELVSKAHARGMKLI 113

Query: 198 LDFVPNHTSNQHEWFK 213
           +D VPNH  ++H W K
Sbjct: 114 MDMVPNHCGSEHWWMK 129

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 407

>gnl|CDD|200474 cd11335, AmyAc_MTase_N, Alpha amylase catalytic domain found in maltosyltransferase

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 46/166 (27%)

Query: 36  EWWQTSVFYHLYPR---SFKDSNGDGV------------GDLKGMIEKLPEHLHDLGVGA 80
           +W ++S  Y L+ R   ++ D +GDG             G    MI  LP +L  +G+  
Sbjct: 41  DWIKSSSVYSLFVRTTTAW-DHDGDGALEPENLYGFRETGTFLKMIALLP-YLKRMGINT 98

Query: 81  VWISPIFK-----------SPMA--DFGYDISDYLSFEPLFGDLK---DFETLKERLHAL 124
           +++ PI K           SP A  +F ++I   L  +PL GDL    +F+   E  H L
Sbjct: 99  IYLLPITKISKKFKKGELGSPYAVKNF-FEIDPLLH-DPLLGDLSVEEEFKAFVEACHML 156

Query: 125 GIKILLDFVPNHTSN------QH-EWF----KKSLANIPPYKCASL 159
           GI+++LDF+P   +       +H EWF       L N  P K   L
Sbjct: 157 GIRVVLDFIPRTAARDSDLILEHPEWFYWIKVDELNNYHPPKVPGL 202

Maltosyltransferase (MTase), a maltodextrin glycosyltransferase, acts on starch and maltooligosaccharides. It catalyzes the transfer of maltosyl units from alpha-1,4-linked glucans or maltooligosaccharides to other alpha-1,4-linked glucans, maltooligosaccharides or glucose. MTase is a homodimer. The catalytic core domain has the (beta/alpha) 8 barrel fold with the active-site cleft formed at the C-terminal end of the barrel. Substrate binding experiments have led to the location of two distinct maltose-binding sites: one lies in the active-site cleft and the other is located in a pocket adjacent to the active-site cleft. It is a member of the alpha-amylase family, but unlike typical alpha-amylases, MTase does not require calcium for activity and lacks two histidine residues which are predicted to be critical for binding the glucose residue adjacent to the scissile bond in the substrates. The common reaction chemistry of the alpha-amylase family of enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 538

>gnl|CDD|200454 cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 18/85 (21%)

Query: 67  EKLPEHLHDLGVGAVWISPIFKS-PMADFG-----------YDISDYLSFEPLFGDLKDF 114
           E LPE +   G  A+  SP  KS    + G           Y I +      L G   DF
Sbjct: 17  ENLPE-IAAAGYTAIQTSPPQKSKEGGNEGGNWWYRYQPTDYRIGNN----QL-GTEDDF 70

Query: 115 ETLKERLHALGIKILLDFVPNHTSN 139
           + L    H  GIKI++D V NH +N
Sbjct: 71  KALCAAAHKYGIKIIVDVVFNHMAN 95

AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Firmicutes, Proteobacteria, Actinobacteria, and Cyanobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 352

>gnl|CDD|200451 cd00551, AmyAc_family, Alpha amylase catalytic domain family

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 25/68 (36%)

Query: 162 RLHDLGVGAVWISPIFKSPMADFGYDISDYLR-------------------------IKI 196
            L DLGV A+W++PIF+SP  D       YL                          IK+
Sbjct: 33  YLKDLGVTAIWLTPIFESPEYDGYDKDDGYLDYYEIDPRLGTEEDFKELVKAAHKRGIKV 92

Query: 197 LLDFVPNH 204
           +LD V NH
Sbjct: 93  ILDLVFNH 100

The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 260

>gnl|CDD|237740 PRK14511, PRK14511, maltooligosyl trehalose synthase; Provisional

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 23/71 (32%)

Query: 157 ASLLARLHDLGVGAVWISPIFKS-PMADFGYDISDYLRIK-------------------- 195
           A L+    DLGV  +++SPI  + P +  GYD+ D+ RI                     
Sbjct: 23  AELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHG 82

Query: 196 --ILLDFVPNH 204
             ++LD VPNH
Sbjct: 83  MGLILDIVPNH 93

Length = 879

>gnl|CDD|200484 cd11346, AmyAc_plant_IsoA, Alpha amylase catalytic domain family found in plant isoamylases

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIF---KSPMADFGYD----ISDYLSFEPLFGDLK 112
           G   G++EK+  HL  LGV  V + PIF   +     +          Y + +       
Sbjct: 29  GTFLGVLEKVD-HLKSLGVNTVLLQPIFAFARVKGPYYPPSFFSAPDPYGAGDSSLSASA 87

Query: 113 DFETLKERLHALGIKILLDFVPNHTS 138
           +   + + LH+ GI++LL+ V  HT+
Sbjct: 88  ELRAMVKGLHSNGIEVLLEVVLTHTA 113

Two types of debranching enzymes exist in plants: isoamylase-type (EC 3.2.1.68) and a pullulanase-type (EC 3.2.1.41, also known as limit-dextrinase). These efficiently hydrolyze alpha-(1,6)-linkages in amylopectin and pullulan. This group does not contain the conserved catalytic triad present in other alpha-amylase-like proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 347

>gnl|CDD|200459 cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase catalytic domain found in maltogenic amylases, cyclodextrin glycosyltransferase, and related proteins

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 31/75 (41%)

Query: 163 LHDLGVGAVWISPIFK---SPMADF------GYDISDYLR-------------------- 193
           L DLGV A+WISP  +   SP+         GY   D+ R                    
Sbjct: 56  LKDLGVTAIWISPPVENINSPIEGGGNTGYHGYWARDFKRTNEHFGTWEDFDELVDAAHA 115

Query: 194 --IKILLDFVPNHTS 206
             IK+++DFVPNH+S
Sbjct: 116 NGIKVIIDFVPNHSS 130

Enzymes such as amylases, cyclomaltodextrinase (CDase), and cyclodextrin glycosyltransferase (CGTase) degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs), consisting of six, seven, or eight glucose residues, respectively. CGTases are characterized depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The maltogenic alpha-amylase from Bacillus is a five-domain structure, unlike most alpha-amylases, but similar to that of cyclodextrin glycosyltransferase. In addition to the A, B, and C domains, they have a domain D and a starch-binding domain E. Maltogenic amylase is an endo-acting amylase that has activity on cyclodextrins, terminally modified linear maltodextrins, and amylose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 389

>gnl|CDD|200476 cd11337, AmyAc_CMD_like, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 24/74 (32%)

Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKIL 197
           L  L +LG  A+++ P+F+S     GYD  DY R                      I+++
Sbjct: 34  LPHLKELGCNALYLGPVFES--DSHGYDTRDYYRIDRRLGTNEDFKALVAALHERGIRVV 91

Query: 198 LDFVPNHTSNQHEW 211
           LD V NH      W
Sbjct: 92  LDGVFNHVGRDFFW 105

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is mainly bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 328

>gnl|CDD|200457 cd11318, AmyAc_bac_fung_AmyA, Alpha amylase catalytic domain found in bacterial and fungal Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 25/89 (28%)

Query: 66  IEKLPEHLHDLGVGAVWISPIFK--SPMADFGYDISDYLSFEPLFGDLKDF--------- 114
           + +    L +LG+ AVW+ P +K  S   D GYD+ D      L+ DL +F         
Sbjct: 22  LAEDAPELAELGITAVWLPPAYKGASGTEDVGYDVYD------LY-DLGEFDQKGTVRTK 74

Query: 115 -------ETLKERLHALGIKILLDFVPNH 136
                      + LH  GI++  D V NH
Sbjct: 75  YGTKEELLEAIKALHENGIQVYADAVLNH 103

AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes bacterial and fungal proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 391

>gnl|CDD|200478 cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 28/71 (39%)

Query: 165 DLGVGAVWISPIFKSPM-----ADF-GYDISDYLR----------------------IKI 196
           DLG  A+WI+P+ K+       A + GY   D+ R                      IK+
Sbjct: 56  DLGFTAIWITPVVKNRSVQAGSAGYHGYWGYDFYRIDPHLGTDADLQDLIDAAHARGIKV 115

Query: 197 LLDFVPNHTSN 207
           +LD V NHT +
Sbjct: 116 ILDIVVNHTGD 126

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 344

>gnl|CDD|200465 cd11326, AmyAc_Glg_debranch, Alpha amylase catalytic domain found in glycogen debranching enzymes

 Score = 42.8 bits (102), Expect = 7e-05
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 22/94 (23%)

Query: 64  GMIE--KLPEHLHDLGVGAVWISPIFK------------------SPMADFGYDISDYLS 103
           G+ E  K+P +L +LGV AV + P+                    + +  F  D   Y S
Sbjct: 43  GLAEPAKIP-YLKELGVTAVELLPVHAFDDEEHLVERGLTNYWGYNTLNFFAPD-PRYAS 100

Query: 104 FEPLFGDLKDFETLKERLHALGIKILLDFVPNHT 137
            +   G + +F+ + + LH  GI+++LD V NHT
Sbjct: 101 DDAPGGPVDEFKAMVKALHKAGIEVILDVVYNHT 134

Debranching enzymes facilitate the breakdown of glycogen through glucosyltransferase and glucosidase activity. These activities are performed by a single enzyme in mammals, yeast, and some bacteria, but by two distinct enzymes in Escherichia coli and other bacteria. Debranching enzymes perform two activities: 4-alpha-D-glucanotransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). 4-alpha-D-glucanotransferase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. Amylo-alpha-1,6-glucosidase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. In Escherichia coli, GlgX is the debranching enzyme and malQ is the 4-alpha-glucanotransferase. TreX, an archaeal glycogen-debranching enzyme has dual activities like mammals and yeast, but is structurally similar to GlgX. TreX exists in two oligomeric states, a dimer and tetramer. Isoamylase (EC 3.2.1.68) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen and their beta-limit dextrins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 433

>gnl|CDD|200481 cd11343, AmyAc_Sucrose_phosphorylase-like, Alpha amylase catalytic domain found in sucrose phosphorylase (also called sucrose glucosyltransferase, disaccharide glucosyltransferase, and sucrose-phosphate alpha-D glucosyltransferase)

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 19/78 (24%)

Query: 162 RLHDLGVGAVWISPIFKSPMADFGYDISDYLRI-----------------KILLDFVPNH 204
            L    +G V I P F    +D G+ + DY  +                  ++ D V NH
Sbjct: 31  HLKGA-IGGVHILPFFPY-SSDDGFSVIDYTEVDPRLGDWDDIEALAEDYDLMFDLVINH 88

Query: 205 TSNQHEWFKKSLANIPPY 222
            S+Q  WF+  LA   P 
Sbjct: 89  ISSQSPWFQDFLAGGDPS 106

Sucrose phosphorylase is a bacterial enzyme that catalyzes the phosphorolysis of sucrose to yield glucose-1-phosphate and fructose. These enzymes do not have the conserved calcium ion present in other alpha amylase family enzymes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 445

>gnl|CDD|233849 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 23/74 (31%)

Query: 154 YKCASLLARLHDLGVGAVWISPIFKS-PMADFGYDISDYLRIK----------------- 195
              A+LL  L  LGV  +++SPI  + P +  GYD+ D+  I                  
Sbjct: 16  DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAAR 75

Query: 196 -----ILLDFVPNH 204
                +++D VPNH
Sbjct: 76  ARGLGLIVDIVPNH 89

This enzyme, formally named (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 825

>gnl|CDD|200468 cd11329, AmyAc_maltase-like, Alpha amylase catalytic domain family found in maltase

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 194 IKILLDFVPNHTSNQHEWFKKSLANIPPYS 223
           IK++LD  PNH+S QH  FK S+   PPY 
Sbjct: 129 IKVILDLTPNHSSKQHPLFKDSVLKEPPYR 158

Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. The catalytic triad (DED) which is highly conserved in the other maltase group is not present in this subfamily. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 477

>gnl|CDD|237794 PRK14705, PRK14705, glycogen branching enzyme; Provisional

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 63  KGMIEKLPEHLHDLGVGAVWISPIFKSPMA-DFGYDISDYLSFEPLFGDLKDFETLKERL 121
           + + ++L +++  LG   V   P+ + P    +GY ++ Y +    FG   +F  L + L
Sbjct: 765 RELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSL 824

Query: 122 HALGIKILLDFVPNH 136
           H  GI +LLD+VP H
Sbjct: 825 HQAGIGVLLDWVPAH 839

Length = 1224

>gnl|CDD|225819 COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 23/74 (31%)

Query: 154 YKCASLLARLHDLGVGAVWISPIFKS-PMADFGYDISDYLRIK----------------- 195
               +LL  L DLG+  +++SPIF + P +  GYD+ D   I                  
Sbjct: 19  ADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALK 78

Query: 196 -----ILLDFVPNH 204
                +++D VPNH
Sbjct: 79  SRGLGLIVDIVPNH 92

Length = 889

>gnl|CDD|200493 cd11356, AmyAc_Sucrose_phosphorylase-like_1, Alpha amylase catalytic domain found in sucrose phosphorylase-like proteins (also called sucrose glucosyltransferase, disaccharide glucosyltransferase, and sucrose-phosphate alpha-D glucosyltransferase)

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 19/81 (23%)

Query: 159 LLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI-----------------KILLDFV 201
           L   L D  +  V I P F    +D G+ + DY ++                 +++ D V
Sbjct: 30  LKEHLKDT-ISGVHILPFFPYS-SDDGFSVIDYRQVNPELGDWEDIEALAKDFRLMFDLV 87

Query: 202 PNHTSNQHEWFKKSLANIPPY 222
            NH S+   WF++ LA  PPY
Sbjct: 88  INHVSSSSPWFQQFLAGEPPY 108

Sucrose phosphorylase is a bacterial enzyme that catalyzes the phosphorolysis of sucrose to yield glucose-1-phosphate and fructose. These enzymes do not have the conserved calcium ion present in other alpha amylase family enzymes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 458

>gnl|CDD|200453 cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 8/76 (10%)

Query: 65  MIEKLPEHLHDLGVGAVWISPIFKS----PMADFGYDISDYLSFEPLFGDLKDFETLKER 120
           +  K PE L   G  A+W+ P  KS     M   GYD  D       +G   +  +L   
Sbjct: 20  LESKAPE-LAAAGFTAIWLPPPSKSVSGSSM---GYDPGDLYDLNSRYGSEAELRSLIAA 75

Query: 121 LHALGIKILLDFVPNH 136
           LHA GIK++ D V NH
Sbjct: 76  LHAKGIKVIADIVINH 91

AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA from bacteria, archaea, water fleas, and plants. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 302

>gnl|CDD|224440 COG1523, PulA, Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 24/123 (19%)

Query: 38  WQTSVFYHLYPRSFKDSNGDGVGDLK-----GMIEKLP-EHLHDLGVGAVWISPIF---- 87
           W+ +V Y  + R F   +  GV +       G+ E +  ++L DLGV AV + P+F    
Sbjct: 169 WEDTVIYEAHVRDFTQLH-PGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYD 227

Query: 88  -----KSPMADF-GYDISDYLSFEPLF-------GDLKDFETLKERLHALGIKILLDFVP 134
                KS + +  GYD  ++ + E  +         +K+F+ + + LH  GI+++LD V 
Sbjct: 228 EPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVF 287

Query: 135 NHT 137
           NHT
Sbjct: 288 NHT 290

Length = 697

>gnl|CDD|188150 TIGR01515, branching_enzym, alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 63  KGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFETLKERL 121
           + + ++L  ++ +LG   + + P+ + P    +GY ++ Y +    FG   DF    +  
Sbjct: 161 RELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDAC 220

Query: 122 HALGIKILLDFVPNH 136
           H  GI ++LD+VP H
Sbjct: 221 HQAGIGVILDWVPGH 235

This model describes the glycogen branching enzymes which are responsible for the transfer of chains of approx. 7 alpha(1--4)-linked glucosyl residues to other similar chains (in new alpha(1--6) linkages) in the biosynthesis of glycogen. This enzyme is a member of the broader amylase family of starch hydrolases which fold as (beta/alpha)8 barrels, the so-called TIM-barrel structure. All of the sequences comprising the seed of this model have been experimentally characterized. (For instance,). This model encompasses both bacterial and eukaryotic species. No archaea have this enzyme, although Aquifex aolicus does. Two species, Bacillus thuringiensis and Clostridium perfringens have two sequences each which are annotated as amylases. These annotations are aparrently in error. GP|18143720 from C. perfringens, for instance, contains the note "674 aa, similar to gp:A14658_1 amylase (1,4-alpha-glucan branching enzyme (EC 2.4.1.18) ) from Bacillus thuringiensis (648 aa); 51.1% identity in 632 aa overlap." A branching enzyme from Porphyromonas gingivales, OMNI|PG1793, appears to be more closely related to the eukaryotic species (across a deep phylogenetic split) and may represent an instance of lateral transfer from this species' host. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 618

>gnl|CDD|237528 PRK13840, PRK13840, sucrose phosphorylase; Provisional

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 58  GVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM--ADFGYDISDYLSFEPLFGDLKDFE 115
           G G LK +   L   L  L  G V I P F  P+  AD G+D  D+   +P  GD  D +
Sbjct: 15  GDGGLKSLTALLDGRLDGL-FGGVHILPFF-YPIDGADAGFDPIDHTKVDPRLGDWDDVK 72

Query: 116 TLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
            L +        I+ D + NH S +   F+  LA 
Sbjct: 73  ALGK-----THDIMADLIVNHMSAESPQFQDVLAK 102

Length = 495

>gnl|CDD|200491 cd11354, AmyAc_bac_CMD_like, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 31/91 (34%)

Query: 160 LARLH-------DLGVGAVWISPIFKSPMADFGYDISDYLRI------------------ 194
           L RL        +LG   + + P+F+S  A  GYD  D+ RI                  
Sbjct: 30  LDRLEPWLDYAVELGCNGLLLGPVFES--ASHGYDTLDHYRIDPRLGDDEDFDALIAAAH 87

Query: 195 ----KILLDFVPNHTSNQHEWFKKSLANIPP 221
               ++LLD V NH    H    ++L + P 
Sbjct: 88  ERGLRVLLDGVFNHVGRSHPAVAQALEDGPG 118

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 357

>gnl|CDD|237795 PRK14706, PRK14706, glycogen branching enzyme; Provisional

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 68  KLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGI 126
           +L E++  +G   V +  + + P    +GY ++ Y +     G  +DF+ L   LH LGI
Sbjct: 172 RLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGI 231

Query: 127 KILLDFVPNH 136
            ++LD+VP H
Sbjct: 232 GVILDWVPGH 241

Length = 639

>gnl|CDD|200489 cd11352, AmyAc_5, Alpha amylase catalytic domain found in an uncharacterized protein family

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 25/70 (35%)

Query: 163 LHDLGVGAVWISPIFKSPMAD---FGYDISDYLR----------------------IKIL 197
           L  LGV A+W+SP+FK         GY I ++L                       I ++
Sbjct: 59  LKRLGVTALWLSPVFKQRPELETYHGYGIQNFLDVDPRFGTREDLRDLVDAAHARGIYVI 118

Query: 198 LDFVPNHTSN 207
           LD + NH+ +
Sbjct: 119 LDIILNHSGD 128

The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 443

>gnl|CDD|200490 cd11353, AmyAc_euk_bac_CMD_like, Alpha amylase catalytic domain found in eukaryotic and bacterial cyclomaltodextrinases and related proteins

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 24/65 (36%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDF 200
           L  LG+ A++  P+F+S     GYD  DY +                      IK++LD 
Sbjct: 39  LKKLGINAIYFGPVFES--DSHGYDTRDYYKIDRRLGTNEDFKAVCKKLHENGIKVVLDG 96

Query: 201 VPNHT 205
           V NH 
Sbjct: 97  VFNHV 101

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is mainly bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 366

>gnl|CDD|200482 cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 40/139 (28%)

Query: 40  TSVFYHLYPRSFKDSNGDGV-GDLKGMIEKLPEHLHDLGVGAVWISPIFK---------- 88
            S +Y  +PRS       G  G  +    +LP  +  +G   +++ PI            
Sbjct: 1   FSAWYEFFPRSA--GADPGRHGTFRDAEARLPR-IAAMGFDVLYLPPIHPIGRTNRKGKN 57

Query: 89  -----------SPMA----DFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
                      SP A    + G+D     +  P  G L+DF+ L      LGI++ LD  
Sbjct: 58  NALVAGPGDPGSPWAIGSEEGGHD-----AIHPELGTLEDFDRLVAEARELGIEVALDIA 112

Query: 134 ----PNH--TSNQHEWFKK 146
               P+H       EWF+ 
Sbjct: 113 LQCSPDHPYVKEHPEWFRH 131

GlgE is a (1,4)-a-D-glucan:phosphate a-D-maltosyltransferase, involved in a-glucan biosynthesis in bacteria. It is also an anti-tuberculosis drug target. GlgE isoform I from Streptomyces coelicolor has the same catalytic and very similar kinetic properties to GlgE from Mycobacterium tuberculosis. GlgE from Streptomyces coelicolor forms a homodimer with each subunit comprising five domains (A, B, C, N, and S) and 2 inserts. Domain A is a catalytic alpha-amylase-type domain that along with domain N, which has a beta-sandwich fold and forms the core of the dimer interface, binds cyclodextrins. Domain A, B, and the 2 inserts define a well conserved donor pocket that binds maltose. Cyclodextrins competitively inhibit the binding of maltooligosaccharides to the S. coelicolor enzyme, indicating that the hydrophobic patch overlaps with the acceptor binding site. This is not the case in M. tuberculosis GlgE because cyclodextrins do not inhibit this enzyme, despite acceptor length specificity being conserved. Domain C is hypothesized to help stabilize domain A and could be involved in substrate binding. Domain S is a helix bundle that is inserted within the N domain and it plays a role in the dimer interface and interacts directly with domain B. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 355

>gnl|CDD|237737 PRK14507, PRK14507, putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 23/69 (33%)

Query: 159 LLARLHDLGVGAVWISPIFKS-PMADFGYDISDYLRI----------------------K 195
           +L  L  LG+  V+ SPI K+ P +  GYDI D+ +I                       
Sbjct: 763 ILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLG 822

Query: 196 ILLDFVPNH 204
            LLD VPNH
Sbjct: 823 QLLDIVPNH 831

Length = 1693

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
PRK10933	551	trehalose-6-phosphate hydrolase; Provisional	100.0
TIGR02403	543	trehalose_treC alpha,alpha-phosphotrehalase. Treha	100.0
TIGR02456	539	treS_nterm trehalose synthase. Trehalose synthase	100.0
PRK10785	598	maltodextrin glucosidase; Provisional	100.0
COG0366	505	AmyA Glycosidases [Carbohydrate transport and meta	99.98
KOG0471|consensus	545		99.97
PF00128	316	Alpha-amylase: Alpha amylase, catalytic domain; In	99.97
PRK13840	495	sucrose phosphorylase; Provisional	99.97
PRK09505	683	malS alpha-amylase; Reviewed	99.96
TIGR03852	470	sucrose_gtfA sucrose phosphorylase. In the forward	99.96
smart00642	166	Aamy Alpha-amylase domain.	99.95
PRK12313	633	glycogen branching enzyme; Provisional	99.95
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	99.95
TIGR02455	688	TreS_stutzeri trehalose synthase, Pseudomonas stut	99.94
PRK05402	726	glycogen branching enzyme; Provisional	99.94
PRK03705	658	glycogen debranching enzyme; Provisional	99.94
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	99.94
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	99.94
PRK12568	730	glycogen branching enzyme; Provisional	99.92
PLN02960	897	alpha-amylase	99.92
PRK14706	639	glycogen branching enzyme; Provisional	99.92
PRK14510	1221	putative bifunctional 4-alpha-glucanotransferase/g	99.92
PLN00196	428	alpha-amylase; Provisional	99.92
PRK09441	479	cytoplasmic alpha-amylase; Reviewed	99.92
PRK14705	1224	glycogen branching enzyme; Provisional	99.92
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	99.91
TIGR02401	825	trehalose_TreY malto-oligosyltrehalose synthase. T	99.91
PLN02447	758	1,4-alpha-glucan-branching enzyme	99.9
PRK14511	879	maltooligosyl trehalose synthase; Provisional	99.9
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	99.9
PLN02361	401	alpha-amylase	99.89
PRK14507	1693	putative bifunctional 4-alpha-glucanotransferase/m	99.89
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	99.88
PLN02784	894	alpha-amylase	99.88
PLN02877	970	alpha-amylase/limit dextrinase	99.87
COG1523	697	PulA Type II secretory pathway, pullulanase PulA a	99.87
TIGR02103	898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	99.85
COG3280	889	TreY Maltooligosyl trehalose synthase [Carbohydrat	99.83
KOG0470|consensus	757		99.81
TIGR01531	1464	glyc_debranch glycogen debranching enzymye. glycog	99.74
PF14701	423	hDGE_amylase: glucanotransferase domain of human g	99.47
PLN03244	872	alpha-amylase; Provisional	99.31
KOG2212|consensus	504		99.15
TIGR03852	470	sucrose_gtfA sucrose phosphorylase. In the forward	98.9
KOG3625|consensus	1521		98.87
PRK13840	495	sucrose phosphorylase; Provisional	98.76
PRK10933	551	trehalose-6-phosphate hydrolase; Provisional	98.57
TIGR02403	543	trehalose_treC alpha,alpha-phosphotrehalase. Treha	98.55
TIGR02456	539	treS_nterm trehalose synthase. Trehalose synthase	98.48
COG0366	505	AmyA Glycosidases [Carbohydrate transport and meta	98.45
PRK10785	598	maltodextrin glucosidase; Provisional	98.39
TIGR02455	688	TreS_stutzeri trehalose synthase, Pseudomonas stut	98.37
PF02324	809	Glyco_hydro_70: Glycosyl hydrolase family 70; Inte	98.3
PF00128	316	Alpha-amylase: Alpha amylase, catalytic domain; In	98.2
KOG0471|consensus	545		98.15
PF14872	811	GHL5: Hypothetical glycoside hydrolase 5	98.03
TIGR02401	825	trehalose_TreY malto-oligosyltrehalose synthase. T	97.99
PRK14507	1693	putative bifunctional 4-alpha-glucanotransferase/m	97.9
PRK14511	879	maltooligosyl trehalose synthase; Provisional	97.85
COG3280	889	TreY Maltooligosyl trehalose synthase [Carbohydrat	97.5
PF14871	132	GHL6: Hypothetical glycosyl hydrolase 6	97.47
smart00642	166	Aamy Alpha-amylase domain.	97.33
PRK09441	479	cytoplasmic alpha-amylase; Reviewed	97.29
TIGR01531	1464	glyc_debranch glycogen debranching enzymye. glycog	96.93
PLN00196	428	alpha-amylase; Provisional	96.91
PRK09505	683	malS alpha-amylase; Reviewed	96.84
PRK12313	633	glycogen branching enzyme; Provisional	96.66
PF02638	311	DUF187: Glycosyl hydrolase like GH101; InterPro: I	96.56
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	96.54
PF14488	166	DUF4434: Domain of unknown function (DUF4434)	96.3
PRK05402	726	glycogen branching enzyme; Provisional	96.28
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	96.27
PLN02361	401	alpha-amylase	95.94
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	95.91
PRK03705	658	glycogen debranching enzyme; Provisional	95.62
COG1649	418	Uncharacterized protein conserved in bacteria [Fun	95.52
PF00150	281	Cellulase: Cellulase (glycosyl hydrolase family 5)	95.52
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	95.15
PLN02960	897	alpha-amylase	95.03
PRK14705	1224	glycogen branching enzyme; Provisional	94.84
cd06593	308	GH31_xylosidase_YicI YicI alpha-xylosidase is a gl	94.57
PRK14508	497	4-alpha-glucanotransferase; Provisional	94.49
PLN02784	894	alpha-amylase	94.46
PLN02447	758	1,4-alpha-glucan-branching enzyme	94.06
PLN02635	538	disproportionating enzyme	93.9
PRK12568	730	glycogen branching enzyme; Provisional	93.77
cd06592	303	GH31_glucosidase_KIAA1161 KIAA1161 is an uncharact	93.69
PRK14706	639	glycogen branching enzyme; Provisional	93.6
PF07745	332	Glyco_hydro_53: Glycosyl hydrolase family 53; Inte	93.44
PF02446	496	Glyco_hydro_77: 4-alpha-glucanotransferase; InterP	93.38
PF02065	394	Melibiase: Melibiase; InterPro: IPR000111 O-Glycos	93.23
PRK09936	296	hypothetical protein; Provisional	93.12
PRK14510	1221	putative bifunctional 4-alpha-glucanotransferase/g	93.09
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	93.0
COG3867	403	Arabinogalactan endo-1,4-beta-galactosidase [Carbo	92.99
PLN02950	909	4-alpha-glucanotransferase	92.53
PF01301	319	Glyco_hydro_35: Glycosyl hydrolases family 35; Int	92.46
PF05913	357	DUF871: Bacterial protein of unknown function (DUF	92.15
PRK11052	695	malQ 4-alpha-glucanotransferase; Provisional	92.01
PLN03236	745	4-alpha-glucanotransferase; Provisional	91.87
cd06568	329	GH20_SpHex_like A subgroup of the Glycosyl hydrola	91.32
COG3589	360	Uncharacterized conserved protein [Function unknow	91.15
PF02449	374	Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0	90.76
cd06562	348	GH20_HexA_HexB-like Beta-N-acetylhexosaminidases c	89.48
cd06569	445	GH20_Sm-chitobiase-like The chitobiase of Serratia	89.02
PF14701	423	hDGE_amylase: glucanotransferase domain of human g	88.94
cd06565	301	GH20_GcnA-like Glycosyl hydrolase family 20 (GH20)	88.5
PF03198	314	Glyco_hydro_72: Glucanosyltransferase; InterPro: I	88.13
PF00728	351	Glyco_hydro_20: Glycosyl hydrolase family 20, cata	87.26
TIGR03849	237	arch_ComA phosphosulfolactate synthase. This model	86.94
PF01120	346	Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR00	86.55
cd02742	303	GH20_hexosaminidase Beta-N-acetylhexosaminidases o	86.33
PLN03059	840	beta-galactosidase; Provisional	86.0
smart00812	384	Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydro	85.82
PF13204	289	DUF4038: Protein of unknown function (DUF4038); PD	85.08
cd06591	319	GH31_xylosidase_XylS XylS is a glycosyl hydrolase	84.88
PRK10076	213	pyruvate formate lyase II activase; Provisional	84.55
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	84.15
cd06563	357	GH20_chitobiase-like The chitobiase of Serratia ma	83.99
PRK08208	430	coproporphyrinogen III oxidase; Validated	83.81
PLN02849	503	beta-glucosidase	83.57
TIGR00539	360	hemN_rel putative oxygen-independent coproporphyri	83.28
PRK05628	375	coproporphyrinogen III oxidase; Validated	83.24
PF10566	273	Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro:	82.52
PRK10426	635	alpha-glucosidase; Provisional	82.22
PRK07094	323	biotin synthase; Provisional	82.2
COG2730	407	BglC Endoglucanase [Carbohydrate transport and met	81.6
TIGR03356	427	BGL beta-galactosidase.	81.58
cd06599	317	GH31_glycosidase_Aec37 Glycosyl hydrolase family 3	81.41
PRK01060	281	endonuclease IV; Provisional	81.01
PLN02877	970	alpha-amylase/limit dextrinase	80.69
TIGR00217	513	malQ 4-alpha-glucanotransferase. This enzyme is kn	80.56
PRK08207	488	coproporphyrinogen III oxidase; Provisional	80.48
cd06570	311	GH20_chitobiase-like_1 A functionally uncharacteri	80.32
cd06564	326	GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (	80.19

>PRK10933 trehalose-6-phosphate hydrolase; Provisional

Probab=100.00  E-value=1.6e-38  Score=296.33  Aligned_cols=159  Identities=36%  Similarity=0.778  Sum_probs=142.1

Q ss_pred             CCccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHH
Q psy8670          34 PLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKD  113 (224)
Q Consensus        34 ~~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~  113 (224)
                      .+.||+++|||||++++|.++++++.|+|+|++++| +||++||||+|||+|+++++..++||++.||++|||+|||+++
T Consensus         4 ~~~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~l-dyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d   82 (551)
T PRK10933          4 LPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRL-DYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDD   82 (551)
T ss_pred             cchhhhcCeEEEEEchHhhcCCCCCCcCHHHHHHhh-HHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHH
Confidence            467999999999999999999999999999999999 9999999999999999998877799999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCC------------------cceeecc
Q psy8670         114 FETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGV------------------GAVWISP  175 (224)
Q Consensus       114 ~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~------------------~~~w~~p  175 (224)
                      |++||++||++||+||+|+|+||+|.+|+||+++....++|.+||+|.+..+...                  ...|+..
T Consensus        83 ~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~  162 (551)
T PRK10933         83 FDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLH  162 (551)
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEee
Confidence            9999999999999999999999999999999999877889999999876321110                  1234455


Q ss_pred             cccCCCCCCCCcchhhHH
Q psy8670         176 IFKSPMADFGYDISDYLR  193 (224)
Q Consensus       176 ~f~~~~~dlny~n~d~~~  193 (224)
                      .|...++|+|++||++++
T Consensus       163 ~f~~~~pdLn~~np~V~~  180 (551)
T PRK10933        163 LFAPEQADLNWENPAVRA  180 (551)
T ss_pred             cccccCCccCCCCHHHHH
Confidence            566678999999999876

>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase

Probab=100.00  E-value=8e-38  Score=291.50  Aligned_cols=156  Identities=44%  Similarity=0.853  Sum_probs=141.2

Q ss_pred             cCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670          37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        37 w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      ||++++||||++++|.++++++.|+|+|++++| +||++|||++|||+|+++++...+||++.||++|||+|||+++|++
T Consensus         1 W~~~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~l-~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~   79 (543)
T TIGR02403         1 WWQKKVIYQIYPKSFYDSTGDGTGDLRGIIEKL-DYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEE   79 (543)
T ss_pred             CcccCEEEEEEhHHHhcCCCCCccCHHHHHHhH-HHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHH
Confidence            999999999999999999999999999999999 9999999999999999999877789999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhccc---C------C--------CcceeecccccC
Q psy8670         117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHD---L------G--------VGAVWISPIFKS  179 (224)
Q Consensus       117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~---l------G--------~~~~w~~p~f~~  179 (224)
                      ||++||++||+||+|+|+|||+.+|+||++++.+.++|.+||+|.+...   .      |        ....|+...|..
T Consensus        80 lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~  159 (543)
T TIGR02403        80 LVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDK  159 (543)
T ss_pred             HHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCC
Confidence            9999999999999999999999999999999877889999999875321   0      0        123455566777


Q ss_pred             CCCCCCCcchhhHH
Q psy8670         180 PMADFGYDISDYLR  193 (224)
Q Consensus       180 ~~~dlny~n~d~~~  193 (224)
                      .+||+||+||++++
T Consensus       160 ~~pdln~~np~v~~  173 (543)
T TIGR02403       160 TQADLNWENPEVRE  173 (543)
T ss_pred             cCCccCCCCHHHHH
Confidence            88999999999876

Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.

>TIGR02456 treS_nterm trehalose synthase

Probab=100.00  E-value=9.8e-37  Score=284.24  Aligned_cols=157  Identities=39%  Similarity=0.730  Sum_probs=137.3

Q ss_pred             ccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHH
Q psy8670          36 EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFE  115 (224)
Q Consensus        36 ~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~  115 (224)
                      .||++++||||++++|.++++++.|+|+|++++| +||++||||+|||+|+++++..++||++.||++|||+|||+++|+
T Consensus         1 ~W~~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~L-dyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~   79 (539)
T TIGR02456         1 LWYKDAVFYEVHVRSFFDSNGDGIGDFPGLTSKL-DYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFK   79 (539)
T ss_pred             CccccceEEEEehhHhhcCCCCCccCHHHHHHhH-HHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHH
Confidence            5999999999999999999999999999999999 999999999999999999987789999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC-CCCccccccchhccc--CC--------C---------cceeecc
Q psy8670         116 TLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN-IPPYKCASLLARLHD--LG--------V---------GAVWISP  175 (224)
Q Consensus       116 ~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~-~~~~~~~f~w~~~~~--lG--------~---------~~~w~~p  175 (224)
                      +||++||++||+||+|+|+||+|.+|+||++++.+ +++|.+||+|.+...  .+        .         ...|+..
T Consensus        80 ~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~  159 (539)
T TIGR02456        80 DFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWH  159 (539)
T ss_pred             HHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEe
Confidence            99999999999999999999999999999998865 678999999854211  00        0         1122223


Q ss_pred             cccCCCCCCCCcchhhHH
Q psy8670         176 IFKSPMADFGYDISDYLR  193 (224)
Q Consensus       176 ~f~~~~~dlny~n~d~~~  193 (224)
                      .|...+|++||+|+++++
T Consensus       160 ~f~~~~pdln~~np~vr~  177 (539)
T TIGR02456       160 RFFSHQPDLNYDNPAVHD  177 (539)
T ss_pred             cccCCCCccCCCCHHHHH
Confidence            345578999999999875

Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).

>PRK10785 maltodextrin glucosidase; Provisional

Probab=100.00  E-value=2.3e-36  Score=284.44  Aligned_cols=154  Identities=28%  Similarity=0.542  Sum_probs=131.4

Q ss_pred             CCCCccCCCceEEEEecccccCcCCC-----------------------------------CCCCHHHHHHHHHHHHHHc
Q psy8670          32 QEPLEWWQTSVFYHLYPRSFKDSNGD-----------------------------------GVGDLKGMIEKLPEHLHDL   76 (224)
Q Consensus        32 ~~~~~w~~~~viY~i~~~~f~~~~~~-----------------------------------~~g~l~~~~~~l~~~l~~l   76 (224)
                      ..+|+|++++|||||+|++|.++++.                                   -+|+|+||+++| +||++|
T Consensus       113 ~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~kL-dYL~~L  191 (598)
T PRK10785        113 DQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKL-PYLKKL  191 (598)
T ss_pred             CCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCcccccCcCCCcccccccccccCcCHHHHHHHH-HHHHHc
Confidence            46789999999999999999876541                                   048999999999 999999


Q ss_pred             CCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC------
Q psy8670          77 GVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN------  150 (224)
Q Consensus        77 G~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~------  150 (224)
                      |||+|||+||+++++ +|||++.||++|||+|||+++|++||++||++|||||+|+|+|||+.+|+||+....+      
T Consensus       192 Gv~~I~L~Pif~s~s-~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~  270 (598)
T PRK10785        192 GVTALYLNPIFTAPS-VHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACH  270 (598)
T ss_pred             CCCEEEeCCcccCCC-CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhcccccccc
Confidence            999999999999874 5999999999999999999999999999999999999999999999999999876532      


Q ss_pred             --CCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         151 --IPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       151 --~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                        .++|.+||.|...   |....|.   .-..+|++|+.|+++++
T Consensus       271 ~~~spy~dwf~~~~~---~~~~~w~---g~~~lPdLN~~np~v~~  309 (598)
T PRK10785        271 HPDSPWRDWYSFSDD---GRALDWL---GYASLPKLDFQSEEVVN  309 (598)
T ss_pred             CCCCCcceeeEECCC---CCcCCcC---CCCcCccccCCCHHHHH
Confidence              4789999987542   1111121   12358999999999776

>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]

Probab=99.98  E-value=5.9e-32  Score=248.53  Aligned_cols=159  Identities=43%  Similarity=0.784  Sum_probs=138.2

Q ss_pred             ceEEEEecccccCcCC------CCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHH
Q psy8670          41 SVFYHLYPRSFKDSNG------DGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDF  114 (224)
Q Consensus        41 ~viY~i~~~~f~~~~~------~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~  114 (224)
                      +++||+++++|.++++      ++.|+|+|++++| +||++|||++|||+|+++++..++||++.||+.+||.+||+++|
T Consensus         1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~L-dYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~   79 (505)
T COG0366           1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKL-DYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDF   79 (505)
T ss_pred             CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhh-hHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHH
Confidence            4799999999999998      8889999999999 99999999999999999997788999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCC-Ccc-ccccchhccc------------CCC------cceeec
Q psy8670         115 ETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PYK-CASLLARLHD------------LGV------GAVWIS  174 (224)
Q Consensus       115 ~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~-~~~-~~f~w~~~~~------------lG~------~~~w~~  174 (224)
                      ++|++++|++||+||+|+|+||+|.+|+||+++..... +.. +||+|.+...            .|.      ...++.
T Consensus        80 ~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (505)
T COG0366          80 KELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYL  159 (505)
T ss_pred             HHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEE
Confidence            99999999999999999999999999999999997653 343 8999865311            111      235777


Q ss_pred             ccccCCCCCCCCcchhhHH-HHHHHhh
Q psy8670         175 PIFKSPMADFGYDISDYLR-IKILLDF  200 (224)
Q Consensus       175 p~f~~~~~dlny~n~d~~~-i~ii~d~  200 (224)
                      +.|...++|+|+.|+++++ +.-++.+
T Consensus       160 ~~~~~~~~dln~~n~~v~~~~~~~~~~  186 (505)
T COG0366         160 HLFSSEQPDLNWENPEVREELLDVVKF  186 (505)
T ss_pred             EecCCCCCCcCCCCHHHHHHHHHHHHH
Confidence            7888889999999999887 3324444

>KOG0471|consensus

Probab=99.97  E-value=6.4e-32  Score=251.36  Aligned_cols=159  Identities=40%  Similarity=0.710  Sum_probs=143.9

Q ss_pred             CCccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHH
Q psy8670          34 PLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKD  113 (224)
Q Consensus        34 ~~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~  113 (224)
                      .++||++.++|||++++|+++++++.|+++|+.++| +||+++|||+||++|+++++..++||.+.||+.|+|+|||+++
T Consensus        11 ~~~~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~kl-dyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~ed   89 (545)
T KOG0471|consen   11 SPDWWKTESIYQIYPDSFADSDGDGVGDLKGITSKL-DYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEED   89 (545)
T ss_pred             CchhhhcCceeEEeccccccccCCCccccccchhhh-hHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHH
Confidence            578999999999999999999999999999999999 9999999999999999999888899999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccC-----------------------CCcc
Q psy8670         114 FETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDL-----------------------GVGA  170 (224)
Q Consensus       114 ~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~l-----------------------G~~~  170 (224)
                      |++|++++|++||++|+|+|+||++..++||......+..|.+||.|.++...                       +...
T Consensus        90 f~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~  169 (545)
T KOG0471|consen   90 FKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQ  169 (545)
T ss_pred             HHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCccccccc
Confidence            99999999999999999999999999999999998776569999999876421                       1134


Q ss_pred             eeecccccCCCCCCCCcchhhHH
Q psy8670         171 VWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       171 ~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      .++...+...++|+||.|+++++
T Consensus       170 ~~~l~~~~~~~pDln~~n~~V~~  192 (545)
T KOG0471|consen  170 KYYLGQFAVLQPDLNYENPDVRK  192 (545)
T ss_pred             ceeccchhhcCCCCCCCCHHHHH
Confidence            45555666678999999999965

>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3

Probab=99.97  E-value=1.5e-31  Score=230.25  Aligned_cols=133  Identities=42%  Similarity=0.747  Sum_probs=111.9

Q ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670          60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSN  139 (224)
Q Consensus        60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~  139 (224)
                      |||+||+++| +|||+|||++|||+||++++..++||++.||++|||+|||++||++||++||++||+||+|+|+||++.
T Consensus         1 Gd~~gi~~kL-dyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~   79 (316)
T PF00128_consen    1 GDFRGIIDKL-DYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSD   79 (316)
T ss_dssp             SSHHHHHHTH-HHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEET
T ss_pred             CCHHHHHHhh-HHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeecccccc
Confidence            7999999999 999999999999999999876789999999999999999999999999999999999999999999999


Q ss_pred             cchhHHhhhc-CCCCccccccchhc--ccC------CCcceeec------ccccCCCCCCCCcchhhHH
Q psy8670         140 QHEWFKKSLA-NIPPYKCASLLARL--HDL------GVGAVWIS------PIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       140 ~~~w~~~~~~-~~~~~~~~f~w~~~--~~l------G~~~~w~~------p~f~~~~~dlny~n~d~~~  193 (224)
                      +++||+.... ...++.+||.|.+.  ...      +....|..      ..+...++++|+.|+++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~  148 (316)
T PF00128_consen   80 DHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVRE  148 (316)
T ss_dssp             TSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHH
T ss_pred             ccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence            9999998886 45568999998643  111      11222332      1234567999999999776

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....

>PRK13840 sucrose phosphorylase; Provisional

Probab=99.97  E-value=2.8e-30  Score=235.94  Aligned_cols=149  Identities=26%  Similarity=0.356  Sum_probs=123.2

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHHHHH-HHHHcCCCeEEEcCcc-cCCCCCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670          39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPE-HLHDLGVGAVWISPIF-KSPMADFGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        39 ~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~-~l~~lG~~~i~l~Pi~-~~~~~~~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      ++.++...|.+++.+      |+|+|++++| + ||+++ |++|||+|+| +++.+++||+|.||++|||+|||++||++
T Consensus         2 ~n~~~litY~Ds~~~------GdL~gl~~kL-d~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~   73 (495)
T PRK13840          2 KNKVQLITYADRLGD------GGLKSLTALL-DGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKA   73 (495)
T ss_pred             CCceEEEEeccCCCC------CCHhHHHHHH-HHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHH
Confidence            467888888888752      7999999999 9 59999 9999999999 55667899999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC--CCCccccccchhcc-c---------------CCC----------
Q psy8670         117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN--IPPYKCASLLARLH-D---------------LGV----------  168 (224)
Q Consensus       117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~--~~~~~~~f~w~~~~-~---------------lG~----------  168 (224)
                      |++     ||+||+|+|+||||.+|+||++++++  +++|.|||+|.+.. +               .|.          
T Consensus        74 L~~-----giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~  148 (495)
T PRK13840         74 LGK-----THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADG  148 (495)
T ss_pred             HHh-----CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCC
Confidence            995     99999999999999999999999743  79999999985420 0               010          


Q ss_pred             cceeecccccCCCCCCCCcchhhHH-HHHHHhh
Q psy8670         169 GAVWISPIFKSPMADFGYDISDYLR-IKILLDF  200 (224)
Q Consensus       169 ~~~w~~p~f~~~~~dlny~n~d~~~-i~ii~d~  200 (224)
                      ...|+...|...|+||||+||++++ +.-|+.+
T Consensus       149 ~~~~~w~tF~~~QpDLN~~NP~V~~~i~~il~f  181 (495)
T PRK13840        149 KTRLVWTTFTPQQIDIDVHSAAGWEYLMSILDR  181 (495)
T ss_pred             CceEEeccCCcccceeCCCCHHHHHHHHHHHHH
Confidence            1245555688889999999999976 3334444

>PRK09505 malS alpha-amylase; Reviewed

Probab=99.96  E-value=6.1e-29  Score=235.47  Aligned_cols=110  Identities=35%  Similarity=0.583  Sum_probs=98.2

Q ss_pred             CCCCCCCccCCCceEEEEecccccCcCC----------CC--------CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC
Q psy8670          29 VPIQEPLEWWQTSVFYHLYPRSFKDSNG----------DG--------VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP   90 (224)
Q Consensus        29 ~~~~~~~~w~~~~viY~i~~~~f~~~~~----------~~--------~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~   90 (224)
                      +...+.+.||++++||||++++|.++++          ++        +|+|+|++++| +||++||||+|||+|++++.
T Consensus       178 ~~~~~~~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kL-dyl~~LGv~aIwlsPi~~~~  256 (683)
T PRK09505        178 ETEAAAPFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKL-DYLQQLGVNALWISSPLEQI  256 (683)
T ss_pred             ccCCCCChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhh-HHHHHcCCCEEEeCcccccc
Confidence            3344667889999999999999987762          11        48999999999 99999999999999999862


Q ss_pred             --------------CCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670          91 --------------MADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSN  139 (224)
Q Consensus        91 --------------~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~  139 (224)
                                    ...+||.+.||+.|||+|||++||++||++||++||+||+|+|+||++.
T Consensus       257 ~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~  319 (683)
T PRK09505        257 HGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGY  319 (683)
T ss_pred             ccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcc
Confidence                          2468999999999999999999999999999999999999999999995

>TIGR03852 sucrose_gtfA sucrose phosphorylase

Probab=99.96  E-value=1.6e-29  Score=229.76  Aligned_cols=144  Identities=27%  Similarity=0.415  Sum_probs=119.3

Q ss_pred             ecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCC
Q psy8670          47 YPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGI  126 (224)
Q Consensus        47 ~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi  126 (224)
                      ...+|.|+.+++.|+|+++.+   .||++ ||++|||+|+|++++ ++||+|.||++|||+|||++||++|+++     |
T Consensus         4 ~lity~Ds~g~glgdl~g~l~---~yL~~-~v~~i~LlPffps~s-D~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~   73 (470)
T TIGR03852         4 MLITYADSLGKNLKELNKVLE---NYFKD-AVGGVHLLPFFPSTG-DRGFAPMDYTEVDPAFGDWSDVEALSEK-----Y   73 (470)
T ss_pred             eEEEecCCCCCChhhHHHHHH---HHHHH-hCCEEEECCCCcCCC-CCCcCchhhceeCcccCCHHHHHHHHHh-----h
Confidence            345666777788889888887   49999 799999999999985 8999999999999999999999999998     6


Q ss_pred             EEEEecCCCCCCccchhHHhhhcC--CCCcccccc-----chhccc----C------------------CCcceeecccc
Q psy8670         127 KILLDFVPNHTSNQHEWFKKSLAN--IPPYKCASL-----LARLHD----L------------------GVGAVWISPIF  177 (224)
Q Consensus       127 ~vilD~v~nh~~~~~~w~~~~~~~--~~~~~~~f~-----w~~~~~----l------------------G~~~~w~~p~f  177 (224)
                      +||+|+|+||||.+|+||++++++  +++|.|||+     |.+..+    .                  .....|+...|
T Consensus        74 kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF  153 (470)
T TIGR03852        74 YLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTF  153 (470)
T ss_pred             hHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccC
Confidence            999999999999999999999965  799999998     443210    0                  01236777788


Q ss_pred             cCCCCCCCCcchhhHH-HHHHHhh
Q psy8670         178 KSPMADFGYDISDYLR-IKILLDF  200 (224)
Q Consensus       178 ~~~~~dlny~n~d~~~-i~ii~d~  200 (224)
                      ...|+||||+|+.+++ +.-|+.+
T Consensus       154 ~~~QpDLN~~np~v~e~i~~il~f  177 (470)
T TIGR03852       154 GEEQIDLDVTSETTKRFIRDNLEN  177 (470)
T ss_pred             CccccccCCCCHHHHHHHHHHHHH
Confidence            8999999999999876 4344444

In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.

>smart00642 Aamy Alpha-amylase domain

Probab=99.95  E-value=2.3e-28  Score=195.73  Aligned_cols=94  Identities=57%  Similarity=1.044  Sum_probs=91.3

Q ss_pred             EEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC---CCCCCCccCCCCcCCCCCCHHHHHHHHHHH
Q psy8670          45 HLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM---ADFGYDISDYLSFEPLFGDLKDFETLKERL  121 (224)
Q Consensus        45 ~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~---~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~  121 (224)
                      ||++++|.++++++.|+|++++++| +||++|||++|||+|++++..   .++||++.||++++|+|||++||++||++|
T Consensus         1 qi~~~~F~~~~~~~~G~~~gi~~~l-~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~   79 (166)
T smart00642        1 QIYPDRFADGNGDGGGDLQGIIEKL-DYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAA   79 (166)
T ss_pred             CeeeccccCCCCCCCcCHHHHHHHH-HHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHH
Confidence            6889999999999999999999999 999999999999999999985   679999999999999999999999999999


Q ss_pred             HHcCCEEEEecCCCCCCc
Q psy8670         122 HALGIKILLDFVPNHTSN  139 (224)
Q Consensus       122 h~~gi~vilD~v~nh~~~  139 (224)
                      |++||+||+|+|+||++.
T Consensus        80 h~~Gi~vilD~V~NH~~~   97 (166)
T smart00642       80 HARGIKVILDVVINHTSD   97 (166)
T ss_pred             HHCCCEEEEEECCCCCCC
Confidence            999999999999999998

>PRK12313 glycogen branching enzyme; Provisional

Probab=99.95  E-value=1.1e-27  Score=227.29  Aligned_cols=106  Identities=23%  Similarity=0.461  Sum_probs=97.8

Q ss_pred             CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      .+..+|||+|+++|+..++++.|+|++++++|++|||+||||+||||||++++. .+|||++.||++++|+|||++||++
T Consensus       145 ~~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~  224 (633)
T PRK12313        145 DRPISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMY  224 (633)
T ss_pred             CCCceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHH
Confidence            466899999999999887777899999999966999999999999999999864 4799999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEecCCCCCCccchh
Q psy8670         117 LKERLHALGIKILLDFVPNHTSNQHEW  143 (224)
Q Consensus       117 lv~~~h~~gi~vilD~v~nh~~~~~~w  143 (224)
                      ||++||++||+||||+|+||++.++..
T Consensus       225 lv~~~H~~Gi~VilD~V~nH~~~~~~~  251 (633)
T PRK12313        225 LVDALHQNGIGVILDWVPGHFPKDDDG  251 (633)
T ss_pred             HHHHHHHCCCEEEEEECCCCCCCCccc
Confidence            999999999999999999999987543

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=99.95  E-value=2.2e-27  Score=221.22  Aligned_cols=102  Identities=29%  Similarity=0.489  Sum_probs=95.5

Q ss_pred             CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      +++.+|||+|++.|+.     .|+|++++++| +||++||||+|||+||++.+. .+|||++.+|++++++|||++||++
T Consensus        91 ~~~~viYE~hv~~f~~-----~G~~~gi~~~l-~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~  164 (542)
T TIGR02402        91 LEEAVIYELHVGTFTP-----EGTFDAAIEKL-PYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKA  164 (542)
T ss_pred             ccccEEEEEEhhhcCC-----CCCHHHHHHhh-HHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHH
Confidence            6889999999999986     69999999999 999999999999999998763 5799999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEecCCCCCCccchhHH
Q psy8670         117 LKERLHALGIKILLDFVPNHTSNQHEWFK  145 (224)
Q Consensus       117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~  145 (224)
                      ||++||++||+||+|+|+||++.++.++.
T Consensus       165 lV~~aH~~Gi~VilD~V~NH~~~~~~~~~  193 (542)
T TIGR02402       165 LVDAAHGLGLGVILDVVYNHFGPEGNYLP  193 (542)
T ss_pred             HHHHHHHCCCEEEEEEccCCCCCcccccc
Confidence            99999999999999999999998776654

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type

Probab=99.94  E-value=8.7e-27  Score=215.44  Aligned_cols=168  Identities=20%  Similarity=0.296  Sum_probs=134.0

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHH--HHHHHHHHHHcCCCeEEEcCcccC---------CCCCCCCCccCCCCcCCC
Q psy8670          39 QTSVFYHLYPRSFKDSNGDGVGDLKGM--IEKLPEHLHDLGVGAVWISPIFKS---------PMADFGYDISDYLSFEPL  107 (224)
Q Consensus        39 ~~~viY~i~~~~f~~~~~~~~g~l~~~--~~~l~~~l~~lG~~~i~l~Pi~~~---------~~~~~gY~~~d~~~v~~~  107 (224)
                      .-++++.++|.++....+...  |..+  ..-. +||++|||++|||+|++++         +..+.||+++|| .|||.
T Consensus        50 ~a~~W~~~~P~s~i~~~~~s~--~~~L~~~~~w-dyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~-~Idp~  125 (688)
T TIGR02455        50 IASVWFTAYPAAIIAPEGCSV--LEALADDALW-KALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISF-DIDPL  125 (688)
T ss_pred             hcCeeEEecchhhcCCCCCcH--HHHhcChHHH-HHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccC-ccCcc
Confidence            347899999999975443321  2222  2334 9999999999999999999         777899999995 99999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccc-----------cchhcccC----------
Q psy8670         108 FGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCAS-----------LLARLHDL----------  166 (224)
Q Consensus       108 ~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f-----------~w~~~~~l----------  166 (224)
                      |||++||++|+++||++||+||+|+|+||||..|+ |+.+..+.++|++||           +|.+..+.          
T Consensus       126 ~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~  204 (688)
T TIGR02455       126 LGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQ  204 (688)
T ss_pred             cCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcc-hHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHH
Confidence            99999999999999999999999999999999999 888887799999999           77663221          


Q ss_pred             ----------------------C------------------CcceeecccccCCCCCCCCcchhhHHHHHHH-hhcccCC
Q psy8670         167 ----------------------G------------------VGAVWISPIFKSPMADFGYDISDYLRIKILL-DFVPNHT  205 (224)
Q Consensus       167 ----------------------G------------------~~~~w~~p~f~~~~~dlny~n~d~~~i~ii~-d~v~nh~  205 (224)
                                            |                  ....||.+.|.+.+|+|||.||.+-..+.|+ |.+    
T Consensus       205 ~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal----  280 (688)
T TIGR02455       205 CDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDAL----  280 (688)
T ss_pred             HHHHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHH----
Confidence                                  1                  1223555778888999999999977777766 653    


Q ss_pred             CCCcHHHHHhhcC
Q psy8670         206 SNQHEWFKKSLAN  218 (224)
Q Consensus       206 ~~~~~W~~~~~~~  218 (224)
                         |.|.+.+++|
T Consensus       281 ---~~w~~lG~~G  290 (688)
T TIGR02455       281 ---HAIDCLGARG  290 (688)
T ss_pred             ---HHHHHhcccc
Confidence               4566665554

Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.

>PRK05402 glycogen branching enzyme; Provisional

Probab=99.94  E-value=2.7e-26  Score=220.47  Aligned_cols=107  Identities=22%  Similarity=0.437  Sum_probs=97.3

Q ss_pred             CCCceEEEEecccccCc-CCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHH
Q psy8670          38 WQTSVFYHLYPRSFKDS-NGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFE  115 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~-~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~  115 (224)
                      .+..+|||+|+++|+.. ++++.|+|++++++|++|||+||||+||||||++++. .+|||++.||++++|+|||++||+
T Consensus       239 ~~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk  318 (726)
T PRK05402        239 DAPISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFR  318 (726)
T ss_pred             cCCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHH
Confidence            45689999999999876 5666799999999966999999999999999999764 469999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEecCCCCCCccchhH
Q psy8670         116 TLKERLHALGIKILLDFVPNHTSNQHEWF  144 (224)
Q Consensus       116 ~lv~~~h~~gi~vilD~v~nh~~~~~~w~  144 (224)
                      +||++||++||+||||+|+||++.++..+
T Consensus       319 ~lV~~~H~~Gi~VilD~V~NH~~~~~~~~  347 (726)
T PRK05402        319 YFVDACHQAGIGVILDWVPAHFPKDAHGL  347 (726)
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCCCccch
Confidence            99999999999999999999998876543

>PRK03705 glycogen debranching enzyme; Provisional

Probab=99.94  E-value=2.3e-26  Score=217.70  Aligned_cols=144  Identities=18%  Similarity=0.321  Sum_probs=108.9

Q ss_pred             CCCceEEEEecccccCcCCC----CCCCHHHHHHH--HHHHHHHcCCCeEEEcCcccCCC----------CCCCCCccCC
Q psy8670          38 WQTSVFYHLYPRSFKDSNGD----GVGDLKGMIEK--LPEHLHDLGVGAVWISPIFKSPM----------ADFGYDISDY  101 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~----~~g~l~~~~~~--l~~~l~~lG~~~i~l~Pi~~~~~----------~~~gY~~~d~  101 (224)
                      +++.+|||+|++.|+..+++    ..|++.+++++  | +|||+||||+|||+||+++..          .+|||++.||
T Consensus       148 ~~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~L-dYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~y  226 (658)
T PRK03705        148 WGSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMI-AYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAM  226 (658)
T ss_pred             ccccEEEEEehhhhcccCCCCCccccccHHHhhcccch-HHHHHcCCCEEEecCcccCCCcccccccccccccCcccccc
Confidence            78999999999999865433    35999999974  8 999999999999999998642          4699999999


Q ss_pred             CCcCCCCCCH-----HHHHHHHHHHHHcCCEEEEecCCCCCCcc---chhHHhhhcCCCCccccccchhcccCCCcceee
Q psy8670         102 LSFEPLFGDL-----KDFETLKERLHALGIKILLDFVPNHTSNQ---HEWFKKSLANIPPYKCASLLARLHDLGVGAVWI  173 (224)
Q Consensus       102 ~~v~~~~G~~-----~~~~~lv~~~h~~gi~vilD~v~nh~~~~---~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~  173 (224)
                      ++++++||+.     +|||+||++||++||+||+|+|+||++..   ++++.  ..+. ....||....   .|.   +.
T Consensus       227 fa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~--~~~~-d~~~yy~~~~---~g~---~~  297 (658)
T PRK03705        227 FALDPAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLS--LRGI-DNRSYYWIRE---DGD---YH  297 (658)
T ss_pred             cccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchh--cccC-CCccceEECC---CCC---cC
Confidence            9999999984     79999999999999999999999999963   34431  1121 1234443221   111   11


Q ss_pred             cccccCCCCCCCCcchhhHH
Q psy8670         174 SPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       174 ~p~f~~~~~dlny~n~d~~~  193 (224)
                      .  +..-.+++|+.++.+++
T Consensus       298 ~--~~g~g~~ln~~~p~Vr~  315 (658)
T PRK03705        298 N--WTGCGNTLNLSHPAVVD  315 (658)
T ss_pred             C--CCCccCcccCCCHHHHH
Confidence            1  11223689999999876

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=99.94  E-value=4.5e-26  Score=215.36  Aligned_cols=104  Identities=22%  Similarity=0.462  Sum_probs=94.5

Q ss_pred             cCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHH
Q psy8670          37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFE  115 (224)
Q Consensus        37 w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~  115 (224)
                      +.+..+|||+|+++|+.     .|++++++++|++||++||||+||||||++++. .+|||++++|++++++|||++||+
T Consensus       135 ~~~~~~iYe~hv~~~~~-----~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk  209 (613)
T TIGR01515       135 YEKPVSIYELHLGSWRH-----GLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFM  209 (613)
T ss_pred             ccCCceEEEEehhhccC-----CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHH
Confidence            34467999999999975     399999999966999999999999999999864 469999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEecCCCCCCccchhHH
Q psy8670         116 TLKERLHALGIKILLDFVPNHTSNQHEWFK  145 (224)
Q Consensus       116 ~lv~~~h~~gi~vilD~v~nh~~~~~~w~~  145 (224)
                      +||++||++||+||+|+|+||++.++..+.
T Consensus       210 ~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~  239 (613)
T TIGR01515       210 YFVDACHQAGIGVILDWVPGHFPKDDHGLA  239 (613)
T ss_pred             HHHHHHHHCCCEEEEEecccCcCCccchhh
Confidence            999999999999999999999998766553

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=99.94  E-value=4.1e-26  Score=217.26  Aligned_cols=149  Identities=24%  Similarity=0.386  Sum_probs=111.5

Q ss_pred             cCCCceEEEEecccccCcCCC----CCCCHHHHHHH--HHHHHHHcCCCeEEEcCcccCCC----------CCCCCCccC
Q psy8670          37 WWQTSVFYHLYPRSFKDSNGD----GVGDLKGMIEK--LPEHLHDLGVGAVWISPIFKSPM----------ADFGYDISD  100 (224)
Q Consensus        37 w~~~~viY~i~~~~f~~~~~~----~~g~l~~~~~~--l~~~l~~lG~~~i~l~Pi~~~~~----------~~~gY~~~d  100 (224)
                      .|++.+|||+|+++|++.+++    ..|+|+|++++  | +|||+||||+|||+||+++..          ..|||++.|
T Consensus       152 ~~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~L-dyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~  230 (688)
T TIGR02100       152 PWEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMI-DYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLG  230 (688)
T ss_pred             CccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchh-HHHHHcCCCEEEECCcccCCccccccccCCCCccCcCccc
Confidence            368999999999999875432    46999999985  8 999999999999999998743          359999999


Q ss_pred             CCCcCCCC---CCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhh-hcCCCCccccccchhcccCCCcceeeccc
Q psy8670         101 YLSFEPLF---GDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS-LANIPPYKCASLLARLHDLGVGAVWISPI  176 (224)
Q Consensus       101 ~~~v~~~~---G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~-~~~~~~~~~~f~w~~~~~lG~~~~w~~p~  176 (224)
                      |++++++|   |+++|||+||++||++||+||||+|+||++.++...... ..+. ....||..... .   .+.+..  
T Consensus       231 y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~-d~~~yy~~~~~-~---~~~~~~--  303 (688)
T TIGR02100       231 FFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGI-DNASYYRLQPD-D---KRYYIN--  303 (688)
T ss_pred             ccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCC-CCCcceEecCC-C---CceecC--
Confidence            99999999   679999999999999999999999999999876432211 1121 12345532211 0   111111  


Q ss_pred             ccCCCCCCCCcchhhHH
Q psy8670         177 FKSPMADFGYDISDYLR  193 (224)
Q Consensus       177 f~~~~~dlny~n~d~~~  193 (224)
                      +..-.+++|+.++.+++
T Consensus       304 ~~g~gn~ln~~~p~vr~  320 (688)
T TIGR02100       304 DTGTGNTLNLSHPRVLQ  320 (688)
T ss_pred             CCCccccccCCCHHHHH
Confidence            11113679999998876

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>PRK12568 glycogen branching enzyme; Provisional

Probab=99.92  E-value=7.7e-25  Score=207.68  Aligned_cols=104  Identities=20%  Similarity=0.349  Sum_probs=96.0

Q ss_pred             CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      .+..+|||+|+++|+...++..++++++++++++|||+||||+|+|+||++.+. .+|||++.+|++++++||++++|++
T Consensus       244 ~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~  323 (730)
T PRK12568        244 PAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQ  323 (730)
T ss_pred             CCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHH
Confidence            456899999999999876666789999999977999999999999999998864 4699999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEecCCCCCCccc
Q psy8670         117 LKERLHALGIKILLDFVPNHTSNQH  141 (224)
Q Consensus       117 lv~~~h~~gi~vilD~v~nh~~~~~  141 (224)
                      ||++||++||+||+|+|+||++.+.
T Consensus       324 lV~~~H~~Gi~VIlD~V~nH~~~d~  348 (730)
T PRK12568        324 FVDACHRAGIGVILDWVSAHFPDDA  348 (730)
T ss_pred             HHHHHHHCCCEEEEEeccccCCccc
Confidence            9999999999999999999999864

>PLN02960 alpha-amylase

Probab=99.92  E-value=1.2e-24  Score=207.65  Aligned_cols=143  Identities=17%  Similarity=0.284  Sum_probs=111.0

Q ss_pred             cCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHH
Q psy8670          37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFE  115 (224)
Q Consensus        37 w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~  115 (224)
                      +.+..+|||+|+++|+.  ..+.|+++++++++++||++||||+||||||++.+. .+|||++++|++++++|||+++|+
T Consensus       392 ~~~~~vIYElHvg~~~~--e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk  469 (897)
T PLN02960        392 VPKSLRIYECHVGISGS--EPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFK  469 (897)
T ss_pred             CCCCcEEEEEecccccC--CCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHH
Confidence            55789999999998853  345789999998844999999999999999998753 569999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         116 TLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       116 ~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      +||++||++||+||+|+|+||++.++.+......+.  ..-||. ..  ..|....|.+       ..+||+++++++
T Consensus       470 ~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FDG~--~~~Yf~-~~--~~g~~~~WG~-------~~fNy~~~eVr~  535 (897)
T PLN02960        470 RLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGS--NDCYFH-SG--KRGHHKRWGT-------RMFKYGDHEVLH  535 (897)
T ss_pred             HHHHHHHHCCCEEEEEecccccCCccccchhhcCCC--ccceee-cC--CCCccCCCCC-------cccCCCCHHHHH
Confidence            999999999999999999999999865433223331  112332 11  1222222322       458999998776

>PRK14706 glycogen branching enzyme; Provisional

Probab=99.92  E-value=1.9e-24  Score=204.34  Aligned_cols=106  Identities=24%  Similarity=0.454  Sum_probs=96.1

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHHH
Q psy8670          39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFETL  117 (224)
Q Consensus        39 ~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~l  117 (224)
                      +..+|||+|+++|+....+..+++++++++|++|||+||||+|+|||+++.+. .+|||++.+|++++++||+++||++|
T Consensus       143 ~~~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~l  222 (639)
T PRK14706        143 QPISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYL  222 (639)
T ss_pred             CCcEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHH
Confidence            45899999999998765555689999999987999999999999999999854 46999999999999999999999999


Q ss_pred             HHHHHHcCCEEEEecCCCCCCccchhH
Q psy8670         118 KERLHALGIKILLDFVPNHTSNQHEWF  144 (224)
Q Consensus       118 v~~~h~~gi~vilD~v~nh~~~~~~w~  144 (224)
                      |++||++||+||+|+|+||++.+..++
T Consensus       223 v~~~H~~gi~VilD~v~nH~~~~~~~l  249 (639)
T PRK14706        223 VNHLHGLGIGVILDWVPGHFPTDESGL  249 (639)
T ss_pred             HHHHHHCCCEEEEEecccccCcchhhh
Confidence            999999999999999999999876544

>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional

Probab=99.92  E-value=6.2e-25  Score=219.53  Aligned_cols=106  Identities=27%  Similarity=0.477  Sum_probs=91.7

Q ss_pred             CCCceEEEEecccccCcCCC----CCCCHHHHH--HHHHHHHHHcCCCeEEEcCcccCCC----------CCCCCCccCC
Q psy8670          38 WQTSVFYHLYPRSFKDSNGD----GVGDLKGMI--EKLPEHLHDLGVGAVWISPIFKSPM----------ADFGYDISDY  101 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~----~~g~l~~~~--~~l~~~l~~lG~~~i~l~Pi~~~~~----------~~~gY~~~d~  101 (224)
                      |++.+|||+|+++|+..++.    ..|+++++.  +.| +|||+||||+|||+||+++..          ++|||++.||
T Consensus       156 ~~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i-~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~y  234 (1221)
T PRK14510        156 WDDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAI-SYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAF  234 (1221)
T ss_pred             cccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhH-HHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCC
Confidence            67899999999999864433    345666666  445 799999999999999998742          3489999999


Q ss_pred             CCcCCCCC--CHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhH
Q psy8670         102 LSFEPLFG--DLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF  144 (224)
Q Consensus       102 ~~v~~~~G--~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~  144 (224)
                      ++++|+||  +.+||++||++||++||+||||+|+|||+.++.+.
T Consensus       235 fa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~  279 (1221)
T PRK14510        235 LAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYG  279 (1221)
T ss_pred             CCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCC
Confidence            99999999  99999999999999999999999999999887664

>PLN00196 alpha-amylase; Provisional

Probab=99.92  E-value=5.8e-24  Score=192.80  Aligned_cols=99  Identities=21%  Similarity=0.438  Sum_probs=86.6

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcC-CCCCCHHHHHHH
Q psy8670          39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFE-PLFGDLKDFETL  117 (224)
Q Consensus        39 ~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~-~~~G~~~~~~~l  117 (224)
                      .+.+|+|-|.+.   .-+..+|++++++++| +||++||||+|||+|++++. +++||++.||++++ ++|||.+||++|
T Consensus        23 ~~~v~~Q~F~W~---~~~~~gg~~~~i~~kl-dyL~~LGvtaIWL~P~~~s~-s~hGY~~~D~y~ld~~~fGt~~elk~L   97 (428)
T PLN00196         23 AGQVLFQGFNWE---SWKQNGGWYNFLMGKV-DDIAAAGITHVWLPPPSHSV-SEQGYMPGRLYDLDASKYGNEAQLKSL   97 (428)
T ss_pred             CCCEEEEeeccC---CCCCCCcCHHHHHHHH-HHHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCcccCCCHHHHHHH
Confidence            357899977631   1123457999999999 99999999999999999876 46999999999999 599999999999


Q ss_pred             HHHHHHcCCEEEEecCCCCCCccch
Q psy8670         118 KERLHALGIKILLDFVPNHTSNQHE  142 (224)
Q Consensus       118 v~~~h~~gi~vilD~v~nh~~~~~~  142 (224)
                      |++||++||+||+|+|+||++.++.
T Consensus        98 v~~aH~~GIkVilDvV~NH~~~~~~  122 (428)
T PLN00196         98 IEAFHGKGVQVIADIVINHRTAEHK  122 (428)
T ss_pred             HHHHHHCCCEEEEEECccCcccccc
Confidence            9999999999999999999998764

>PRK09441 cytoplasmic alpha-amylase; Reviewed

Probab=99.92  E-value=1.3e-24  Score=200.25  Aligned_cols=102  Identities=24%  Similarity=0.476  Sum_probs=87.3

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC--CCCCCCccCCC---------CcCCC
Q psy8670          39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM--ADFGYDISDYL---------SFEPL  107 (224)
Q Consensus        39 ~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~---------~v~~~  107 (224)
                      +..||.|.|-+...    .+..++++|+++| +||++||||+|||+|++++.+  .++||++.||+         +|||+
T Consensus         2 ~~~~~~q~f~w~~~----~~~~~~~~I~~kl-dyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~   76 (479)
T PRK09441          2 RNGTMMQYFEWYLP----NDGKLWNRLAERA-PELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTK   76 (479)
T ss_pred             CCceEEEEEEeccC----CCccHHHHHHHHH-HHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcC
Confidence            35788887755532    2234678999999 999999999999999999853  46999999999         78999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEecCCCCCCcc--chhHH
Q psy8670         108 FGDLKDFETLKERLHALGIKILLDFVPNHTSNQ--HEWFK  145 (224)
Q Consensus       108 ~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~--~~w~~  145 (224)
                      |||++||++||++||++||+||+|+|+||++.+  ++||+
T Consensus        77 fGt~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~  116 (479)
T PRK09441         77 YGTKEELLNAIDALHENGIKVYADVVLNHKAGADEKETFR  116 (479)
T ss_pred             cCCHHHHHHHHHHHHHCCCEEEEEECcccccCCCcceeee
Confidence            999999999999999999999999999999964  36775

>PRK14705 glycogen branching enzyme; Provisional

Probab=99.92  E-value=2.9e-24  Score=212.47  Aligned_cols=138  Identities=22%  Similarity=0.393  Sum_probs=108.5

Q ss_pred             CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      .+..+|||+|+++|+.     .++++++++++++|||+||||+||||||++++. .+|||++++|++++++|||++||++
T Consensus       745 ~~p~~IYEvHvgsf~~-----~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~  819 (1224)
T PRK14705        745 NSPMSVYEVHLGSWRL-----GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRF  819 (1224)
T ss_pred             cCCcEEEEEEeccccc-----CCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHH
Confidence            3568999999999976     478999999966999999999999999998864 5699999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      ||++||++||+||+|+|+||++.++ |+.....+.   ..|+. .+. ..|....|.+       ..+||.++++++
T Consensus       820 lVd~~H~~GI~VILD~V~nH~~~d~-~~l~~fdg~---~~y~~-~d~-~~g~~~~Wg~-------~~fn~~~~eVr~  883 (1224)
T PRK14705        820 LVDSLHQAGIGVLLDWVPAHFPKDS-WALAQFDGQ---PLYEH-ADP-ALGEHPDWGT-------LIFDFGRTEVRN  883 (1224)
T ss_pred             HHHHHHHCCCEEEEEeccccCCcch-hhhhhcCCC---ccccc-CCc-ccCCCCCCCC-------ceecCCCHHHHH
Confidence            9999999999999999999998774 554443332   11222 111 1232223322       358999998876

>TIGR02104 pulA_typeI pullulanase, type I

Probab=99.91  E-value=2.7e-24  Score=203.14  Aligned_cols=107  Identities=29%  Similarity=0.527  Sum_probs=91.0

Q ss_pred             CCCceEEEEecccccCcCCCC---CCCHHHHHHH-----------HHHHHHHcCCCeEEEcCcccCCC---------CCC
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDG---VGDLKGMIEK-----------LPEHLHDLGVGAVWISPIFKSPM---------ADF   94 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~---~g~l~~~~~~-----------l~~~l~~lG~~~i~l~Pi~~~~~---------~~~   94 (224)
                      +++.+|||+|++.|+...+.+   .|+|.+++++           | +||++||||+|||+||++.+.         .+|
T Consensus       125 ~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~L-dyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~w  203 (605)
T TIGR02104       125 PEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGL-DYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNW  203 (605)
T ss_pred             hhHcEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchhHH-HHHHHcCCCEEEeCCcccccccccccCCCCCCC
Confidence            567899999999998755433   5777777665           8 999999999999999998753         359


Q ss_pred             CCCccCCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEecCCCCCCc-cchhHH
Q psy8670          95 GYDISDYLSFEPLFGD--------LKDFETLKERLHALGIKILLDFVPNHTSN-QHEWFK  145 (224)
Q Consensus        95 gY~~~d~~~v~~~~G~--------~~~~~~lv~~~h~~gi~vilD~v~nh~~~-~~~w~~  145 (224)
                      ||++.||++++++||+        ++|||+||++||++||+||||+|+||++. ++.+|+
T Consensus       204 GY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~  263 (605)
T TIGR02104       204 GYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREESPFE  263 (605)
T ss_pred             CCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCCCccc
Confidence            9999999999999987        58999999999999999999999999974 444444

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase

Probab=99.91  E-value=6.1e-24  Score=203.01  Aligned_cols=103  Identities=27%  Similarity=0.469  Sum_probs=94.9

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEcCcccC-CCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670          59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT  137 (224)
Q Consensus        59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~-~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~  137 (224)
                      .++|++++++| +||++|||++|||+|++++ +.++|||++.||++|||+||++++|++|+++||++||+||+|+|+||+
T Consensus        12 ~~tf~~~~~~L-~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~   90 (825)
T TIGR02401        12 GFTFDDAAALL-PYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHM   90 (825)
T ss_pred             CCCHHHHHHhh-HHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence            57999999999 9999999999999999986 446799999999999999999999999999999999999999999999


Q ss_pred             Ccc---chhHHhhhcC--CCCccccccchh
Q psy8670         138 SNQ---HEWFKKSLAN--IPPYKCASLLAR  162 (224)
Q Consensus       138 ~~~---~~w~~~~~~~--~~~~~~~f~w~~  162 (224)
                      +.+   ++||++.++.  .|+|.+||.++.
T Consensus        91 a~~~~~n~wf~dvl~~g~~S~y~~~Fdidw  120 (825)
T TIGR02401        91 AVHLEQNPWWWDVLKNGPSSAYAEYFDIDW  120 (825)
T ss_pred             ccccccChHHHHHHHhCCCCCccCceEEeC
Confidence            976   8999999853  789999995443

This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=99.90  E-value=3.1e-23  Score=197.26  Aligned_cols=141  Identities=20%  Similarity=0.297  Sum_probs=108.1

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHHH
Q psy8670          39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFETL  117 (224)
Q Consensus        39 ~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~l  117 (224)
                      +..+|||+|++.|+.  ....|+++++.+++++|||+||||+|+||||++.+. .+|||++.+|++++++|||++||++|
T Consensus       228 ~~~~IYE~Hvg~~~~--~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~L  305 (758)
T PLN02447        228 AALRIYEAHVGMSSE--EPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYL  305 (758)
T ss_pred             CCCEEEEEeCCcccC--CCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHH
Confidence            457899999998853  335789999877644999999999999999999864 57999999999999999999999999


Q ss_pred             HHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         118 KERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       118 v~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      |++||++||+||+|+|+||++.++..-....  +.....||...   ..|....|.+       ..+||.++++++
T Consensus       306 Vd~aH~~GI~VilDvV~nH~~~~~~~gl~~f--Dg~~~~Yf~~~---~~g~~~~w~~-------~~~N~~~~eVr~  369 (758)
T PLN02447        306 IDKAHSLGLRVLMDVVHSHASKNTLDGLNGF--DGTDGSYFHSG---PRGYHWLWDS-------RLFNYGNWEVLR  369 (758)
T ss_pred             HHHHHHCCCEEEEEecccccccccccccccc--CCCCccccccC---CCCCcCcCCC-------ceecCCCHHHHH
Confidence            9999999999999999999998653111111  12333566421   1232222322       358999998765

>PRK14511 maltooligosyl trehalose synthase; Provisional

Probab=99.90  E-value=3.5e-23  Score=198.68  Aligned_cols=100  Identities=29%  Similarity=0.491  Sum_probs=92.5

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEcCcccC-CCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670          59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT  137 (224)
Q Consensus        59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~-~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~  137 (224)
                      ..+|+++++++ +||++|||++|||+|++++ +.++|||++.||+.|||.+|+.++|++|+++||++||+||+|+|+||+
T Consensus        16 ~~tf~~~~~~l-~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~   94 (879)
T PRK14511         16 GFTFDDAAELV-PYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHM   94 (879)
T ss_pred             CCCHHHHHHHh-HHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence            46899999999 9999999999999999987 446799999999999999999999999999999999999999999999


Q ss_pred             Ccc---chhHHhhhcC--CCCcccccc
Q psy8670         138 SNQ---HEWFKKSLAN--IPPYKCASL  159 (224)
Q Consensus       138 ~~~---~~w~~~~~~~--~~~~~~~f~  159 (224)
                      +.+   ++||.+.+..  .|+|.+||.
T Consensus        95 ~~~~~~n~ww~dvl~~g~~S~y~~~Fd  121 (879)
T PRK14511         95 AVGGPDNPWWWDVLEWGRSSPYADFFD  121 (879)
T ss_pred             cCcCccCHHHHHHHHhCCCCCccCcee
Confidence            974   4899998853  789999994

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=99.90  E-value=2e-23  Score=205.37  Aligned_cols=104  Identities=26%  Similarity=0.563  Sum_probs=91.5

Q ss_pred             CCCceEEEEecccccCcCC------CCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccC-------------------CCC
Q psy8670          38 WQTSVFYHLYPRSFKDSNG------DGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-------------------PMA   92 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~------~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~-------------------~~~   92 (224)
                      +++++|||+|++.|+...+      ...|+|++++++| +|||+||||+||||||++.                   ...
T Consensus       449 ~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekL-dYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~y  527 (1111)
T TIGR02102       449 REDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKL-DYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNY  527 (1111)
T ss_pred             ccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhH-HHHHHcCCCEEEEcCcccccccccccccccccccccccccc
Confidence            5789999999999985322      1359999999999 9999999999999999862                   113


Q ss_pred             CCCCCccCCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEecCCCCCCccch
Q psy8670          93 DFGYDISDYLSFEPLFGD--------LKDFETLKERLHALGIKILLDFVPNHTSNQHE  142 (224)
Q Consensus        93 ~~gY~~~d~~~v~~~~G~--------~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~  142 (224)
                      +|||++.+|++++++||+        .+||++||++||++||+||||+|+||++..+.
T Consensus       528 nWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~  585 (1111)
T TIGR02102       528 NWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYI  585 (1111)
T ss_pred             ccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccccccc
Confidence            599999999999999997        58999999999999999999999999998764

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>PLN02361 alpha-amylase

Probab=99.89  E-value=1.1e-22  Score=182.73  Aligned_cols=93  Identities=16%  Similarity=0.309  Sum_probs=83.0

Q ss_pred             CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHH
Q psy8670          40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE  119 (224)
Q Consensus        40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~  119 (224)
                      +.+|+|-|-+...+     ...+++++++| +||++||||+|||+|++++.. .+||++.||+++|++|||.+||++||+
T Consensus        11 ~~v~lQ~F~W~~~~-----~~~w~~i~~kl-~~l~~lG~t~iwl~P~~~~~~-~~GY~~~d~y~~~~~~Gt~~el~~li~   83 (401)
T PLN02361         11 REILLQAFNWESHK-----HDWWRNLEGKV-PDLAKSGFTSAWLPPPSQSLA-PEGYLPQNLYSLNSAYGSEHLLKSLLR   83 (401)
T ss_pred             CcEEEEEEeccCCc-----cHHHHHHHHHH-HHHHHcCCCEEEeCCCCcCCC-CCCCCcccccccCcccCCHHHHHHHHH
Confidence            57899977544222     24789999999 999999999999999998864 599999999999999999999999999


Q ss_pred             HHHHcCCEEEEecCCCCCCc
Q psy8670         120 RLHALGIKILLDFVPNHTSN  139 (224)
Q Consensus       120 ~~h~~gi~vilD~v~nh~~~  139 (224)
                      +||++||+||+|+|+||++.
T Consensus        84 ~~h~~gi~vi~D~V~NH~~g  103 (401)
T PLN02361         84 KMKQYNVRAMADIVINHRVG  103 (401)
T ss_pred             HHHHcCCEEEEEEccccccC
Confidence            99999999999999999964

>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional

Probab=99.89  E-value=8.6e-23  Score=206.01  Aligned_cols=112  Identities=31%  Similarity=0.454  Sum_probs=100.5

Q ss_pred             eEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccC-CCCCCCCCccCCCCcCCCCCCHHHHHHHHHH
Q psy8670          42 VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKER  120 (224)
Q Consensus        42 viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~-~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~  120 (224)
                      .+|-+....        .++|+++++++ +||++|||++|||+||+++ +.++|||++.||+.|||.||+.++|++|+++
T Consensus       745 atyrlq~~~--------~~tf~~~~~~l-~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~  815 (1693)
T PRK14507        745 ATYRLQFHK--------DFTFADAEAIL-PYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAA  815 (1693)
T ss_pred             eeEEEEeCC--------CCCHHHHHHHh-HHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHH
Confidence            366665444        57999999999 9999999999999999996 5567999999999999999999999999999


Q ss_pred             HHHcCCEEEEecCCCCCC---ccchhHHhhhc-C-CCCccccccchh
Q psy8670         121 LHALGIKILLDFVPNHTS---NQHEWFKKSLA-N-IPPYKCASLLAR  162 (224)
Q Consensus       121 ~h~~gi~vilD~v~nh~~---~~~~w~~~~~~-~-~~~~~~~f~w~~  162 (224)
                      ||++||+||+|+|+||++   .+++||++.++ + .|+|.+||.++.
T Consensus       816 ah~~Gi~vilDiV~NH~~~~~~~n~w~~dvl~~g~~S~y~~~Fdidw  862 (1693)
T PRK14507        816 LKAHGLGQLLDIVPNHMGVGGADNPWWLDVLENGPASPAADAFDIDW  862 (1693)
T ss_pred             HHHCCCEEEEEecccccCCCccCCHHHHHHHHhCCCCCccCeeeecc
Confidence            999999999999999999   58999999985 3 799999997443

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=99.88  E-value=2.5e-22  Score=187.08  Aligned_cols=105  Identities=30%  Similarity=0.563  Sum_probs=95.8

Q ss_pred             CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      ++..+|||+|+.+|+. + ...|+++..+++| +||++||||+|.||||.+.+. .+|||+++.|+++..+|||+++||+
T Consensus       142 ~e~~vIYElHvGs~~~-~-~~~~~~e~a~~ll-pYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~  218 (628)
T COG0296         142 WEPIVIYELHVGSFTP-D-RFLGYFELAIELL-PYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKA  218 (628)
T ss_pred             CCCceEEEEEeeeccC-C-CCcCHHHHHHHHh-HHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHH
Confidence            5689999999999987 3 5567888888888 999999999999999999864 6799999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEecCCCCCCccchhHH
Q psy8670         117 LKERLHALGIKILLDFVPNHTSNQHEWFK  145 (224)
Q Consensus       117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~  145 (224)
                      ||++||++||.||||+|+||.+.+...+.
T Consensus       219 fVD~aH~~GIgViLD~V~~HF~~d~~~L~  247 (628)
T COG0296         219 LVDAAHQAGIGVILDWVPNHFPPDGNYLA  247 (628)
T ss_pred             HHHHHHHcCCEEEEEecCCcCCCCcchhh
Confidence            99999999999999999999999776654

>PLN02784 alpha-amylase

Probab=99.88  E-value=5.2e-22  Score=188.99  Aligned_cols=149  Identities=18%  Similarity=0.178  Sum_probs=108.2

Q ss_pred             CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHH
Q psy8670          40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE  119 (224)
Q Consensus        40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~  119 (224)
                      .+..|++....|..........++++++++ +||++||||+|||+|++++. .++||++.||+++|++|||.+||++||+
T Consensus       498 ~~~~~eVmlQgF~Wds~~dg~w~~~I~ekl-dyL~~LG~taIWLpP~~~s~-s~~GY~p~D~y~lds~yGT~~ELk~LI~  575 (894)
T PLN02784        498 TGSGFEILCQGFNWESHKSGRWYMELGEKA-AELSSLGFTVVWLPPPTESV-SPEGYMPKDLYNLNSRYGTIDELKDLVK  575 (894)
T ss_pred             ccCCceEEEEeEEcCcCCCCchHHHHHHHH-HHHHHhCCCEEEeCCCCCCC-CCCCcCcccccccCcCcCCHHHHHHHHH
Confidence            455778888888744333334589999999 99999999999999999876 4599999999999999999999999999


Q ss_pred             HHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccC------CCcceeecccccCCCCCCCCcchhhHH
Q psy8670         120 RLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDL------GVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       120 ~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~l------G~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      +||++||+||+|+|+||++..   +++.......|..++.|.+....      ...+..++.-.-..++|+++.|+.+++
T Consensus       576 a~H~~GIkVIlDiViNH~ag~---f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~  652 (894)
T PLN02784        576 SFHEVGIKVLGDAVLNHRCAH---FQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRK  652 (894)
T ss_pred             HHHHCCCEEEEEECccccccc---ccCCCCcccccCCeecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHH
Confidence            999999999999999999864   22211112344455555431110      001111111111246999999999886

>PLN02877 alpha-amylase/limit dextrinase

Probab=99.87  E-value=7.1e-22  Score=191.21  Aligned_cols=121  Identities=22%  Similarity=0.360  Sum_probs=98.4

Q ss_pred             CCCceEEEEecccccCcCC----CCCCCHHHHHHH-------HHHHHHHcCCCeEEEcCcccCC----------------
Q psy8670          38 WQTSVFYHLYPRSFKDSNG----DGVGDLKGMIEK-------LPEHLHDLGVGAVWISPIFKSP----------------   90 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~----~~~g~l~~~~~~-------l~~~l~~lG~~~i~l~Pi~~~~----------------   90 (224)
                      +.+.+|||+|++.|+..++    ...|+|.+++++       | ++|+++|||+|+|||+++..                
T Consensus       337 ~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hL-k~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~  415 (970)
T PLN02877        337 FSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHL-KKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKE  415 (970)
T ss_pred             CcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHH-HHHHHcCCCEEEeCCccccCCcccccccccccccch
Confidence            5678999999999987543    245899998876       5 66666799999999998752                


Q ss_pred             ----------------------CCCCCCCccCCCCcCCCCCC-------HHHHHHHHHHHHHcCCEEEEecCCCCCCccc
Q psy8670          91 ----------------------MADFGYDISDYLSFEPLFGD-------LKDFETLKERLHALGIKILLDFVPNHTSNQH  141 (224)
Q Consensus        91 ----------------------~~~~gY~~~d~~~v~~~~G~-------~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~  141 (224)
                                            ..+|||+|..|+.++.+|++       ..||++||++||++||+||+|+|+||++..+
T Consensus       416 l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g  495 (970)
T PLN02877        416 LEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSG  495 (970)
T ss_pred             hccccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCC
Confidence                                  15699999999999999998       3689999999999999999999999999988


Q ss_pred             hhHHhh-hcCCCCccccccch
Q psy8670         142 EWFKKS-LANIPPYKCASLLA  161 (224)
Q Consensus       142 ~w~~~~-~~~~~~~~~~f~w~  161 (224)
                      +|..++ +.+.  .+.||.+.
T Consensus       496 ~~~~~s~ld~~--vP~YY~r~  514 (970)
T PLN02877        496 PFDENSVLDKI--VPGYYLRR  514 (970)
T ss_pred             CcchhhcccCC--CCCceEEE
Confidence            887543 3332  33666543

>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]

Probab=99.87  E-value=2.6e-22  Score=189.46  Aligned_cols=103  Identities=32%  Similarity=0.596  Sum_probs=91.3

Q ss_pred             CCCceEEEEecccccCcCCC----CCCCHHHHHHH--HHHHHHHcCCCeEEEcCcccC----------CCCCCCCCccCC
Q psy8670          38 WQTSVFYHLYPRSFKDSNGD----GVGDLKGMIEK--LPEHLHDLGVGAVWISPIFKS----------PMADFGYDISDY  101 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~----~~g~l~~~~~~--l~~~l~~lG~~~i~l~Pi~~~----------~~~~~gY~~~d~  101 (224)
                      |+++||||+|++.|+..+++    ..||+.++++.  + +|||+||||+|+|+||+..          ..++|||+|..|
T Consensus       169 ~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i-~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~f  247 (697)
T COG1523         169 WEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVII-DYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNF  247 (697)
T ss_pred             ccceEEEEeeecccccCCCCCchhhccceehhccccHH-HHHHHhCCceEEEecceEEeccccccccccccccCCCcccc
Confidence            89999999999999965443    34999999999  8 9999999999999999875          125799999999


Q ss_pred             CCcCCCCCC-------HHHHHHHHHHHHHcCCEEEEecCCCCCCccc
Q psy8670         102 LSFEPLFGD-------LKDFETLKERLHALGIKILLDFVPNHTSNQH  141 (224)
Q Consensus       102 ~~v~~~~G~-------~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~  141 (224)
                      ++++++|.+       ..|||.||+++|++||+||||+|+|||+...
T Consensus       248 FAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~  294 (697)
T COG1523         248 FAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGN  294 (697)
T ss_pred             cCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCccccc
Confidence            999999854       4699999999999999999999999998653

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type

Probab=99.85  E-value=4.7e-21  Score=185.56  Aligned_cols=119  Identities=24%  Similarity=0.390  Sum_probs=97.0

Q ss_pred             CCCceEEEEecccccCcCC----CCCCCHHHHHHH-------HHHHHHHcCCCeEEEcCcccCC----------------
Q psy8670          38 WQTSVFYHLYPRSFKDSNG----DGVGDLKGMIEK-------LPEHLHDLGVGAVWISPIFKSP----------------   90 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~----~~~g~l~~~~~~-------l~~~l~~lG~~~i~l~Pi~~~~----------------   90 (224)
                      +++.+|||+|++.|+..++    ...|+|.+++++       | ++|++||||+|+|||+|+..                
T Consensus       250 ~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hL-k~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~  328 (898)
T TIGR02103       250 FADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHL-KKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPF  328 (898)
T ss_pred             CcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHH-HHHHhCCCcEEEEcChhhcCccccccccccccccch
Confidence            6789999999999985443    346899999886       5 66667899999999998642                


Q ss_pred             -----------------------------------------------CCCCCCCccCCCCcCCCCCC-------HHHHHH
Q psy8670          91 -----------------------------------------------MADFGYDISDYLSFEPLFGD-------LKDFET  116 (224)
Q Consensus        91 -----------------------------------------------~~~~gY~~~d~~~v~~~~G~-------~~~~~~  116 (224)
                                                                     ..+|||+|..|+.++.+|++       ..||++
T Consensus       329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~  408 (898)
T TIGR02103       329 SKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFRE  408 (898)
T ss_pred             hhhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHH
Confidence                                                           13699999999999999987       379999


Q ss_pred             HHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCcccccc
Q psy8670         117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASL  159 (224)
Q Consensus       117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~  159 (224)
                      ||++||++||+||+|+|+|||+..+++....+.+.  .+.||.
T Consensus       409 mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~--~P~YY~  449 (898)
T TIGR02103       409 MVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKI--VPGYYH  449 (898)
T ss_pred             HHHHHHHCCCEEEEEeecccccccCccCccccccc--CcHhhE
Confidence            99999999999999999999999887765444432  235664

Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).

>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]

Probab=99.83  E-value=1.1e-20  Score=175.50  Aligned_cols=120  Identities=26%  Similarity=0.448  Sum_probs=104.4

Q ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEcCcccC-CCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670          60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS  138 (224)
Q Consensus        60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~-~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~  138 (224)
                      =+|....+.+ +||++|||+++|++|||.+ +.+.|||+|+|+..|||.+|+.+.|.+|++++|++||.+|+|+|+||++
T Consensus        16 FtF~~A~~~l-~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMa   94 (889)
T COG3280          16 FTFADARALL-DYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMA   94 (889)
T ss_pred             CCHHHHHHhh-HHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchh
Confidence            3789999999 9999999999999999987 5567999999999999999999999999999999999999999999998


Q ss_pred             cc---chhHHhhhcC--CCCccccccchhcccCCCcceeecccccCC
Q psy8670         139 NQ---HEWFKKSLAN--IPPYKCASLLARLHDLGVGAVWISPIFKSP  180 (224)
Q Consensus       139 ~~---~~w~~~~~~~--~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~  180 (224)
                      ..   ++|+.+.++.  +|.|.+||..+.....+..++-..|+.+++
T Consensus        95 v~g~~N~ww~DVLe~G~~S~ya~yFDI~W~~~~~a~gkillP~LGd~  141 (889)
T COG3280          95 VGGHENPWWWDVLENGRDSAYANYFDIDWEEPDGAQGKILLPFLGDD  141 (889)
T ss_pred             cccccChHHHHHHHhCcCccchhhcccccCCCCCcCceeeeccccch
Confidence            54   7999999964  799999997554444444666677776654

>KOG0470|consensus

Probab=99.81  E-value=8.4e-20  Score=169.91  Aligned_cols=102  Identities=30%  Similarity=0.603  Sum_probs=91.3

Q ss_pred             CceEEEEecccccCcCCCC--CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC-C-CCCCCCccCCCCcCCCCCCHH---
Q psy8670          40 TSVFYHLYPRSFKDSNGDG--VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-M-ADFGYDISDYLSFEPLFGDLK---  112 (224)
Q Consensus        40 ~~viY~i~~~~f~~~~~~~--~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~-~-~~~gY~~~d~~~v~~~~G~~~---  112 (224)
                      +..|||+|++.|+...+..  .|.+.+++++.+++||+||+|+|+|+||++.+ . ..+||.|++|++...+|||.+   
T Consensus       229 sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~  308 (757)
T KOG0470|consen  229 SLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPC  308 (757)
T ss_pred             heEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCccc
Confidence            7899999999998766542  23399999993399999999999999999993 3 479999999999999999999   


Q ss_pred             ---HHHHHHHHHHHcCCEEEEecCCCCCCccc
Q psy8670         113 ---DFETLKERLHALGIKILLDFVPNHTSNQH  141 (224)
Q Consensus       113 ---~~~~lv~~~h~~gi~vilD~v~nh~~~~~  141 (224)
                         |||.||++||..||.|+||+|.||++.+.
T Consensus       309 ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~  340 (757)
T KOG0470|consen  309 RINEFKELVDKAHSLGIEVLLDVVHSHAAKNS  340 (757)
T ss_pred             chHHHHHHHHHHhhCCcEEehhhhhhhcccCc
Confidence               99999999999999999999999999854

>TIGR01531 glyc_debranch glycogen debranching enzymye

Probab=99.74  E-value=4.2e-18  Score=168.44  Aligned_cols=88  Identities=24%  Similarity=0.395  Sum_probs=83.6

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCC----CHHHHHHHHHHHHHc-CCEEEEecC
Q psy8670          59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFG----DLKDFETLKERLHAL-GIKILLDFV  133 (224)
Q Consensus        59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G----~~~~~~~lv~~~h~~-gi~vilD~v  133 (224)
                      .|+|.++.++| ++|+++|+|.|||+||++.+.+++.|++.||+++||.+|    +.++|++||+++|++ ||++|+|+|
T Consensus       128 mG~~~~w~~~L-~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV  206 (1464)
T TIGR01531       128 LGPLSEWEPRL-RVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIV  206 (1464)
T ss_pred             cCCHHHHHHHH-HHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence            59999999999 999999999999999998877889999999999999994    899999999999996 999999999


Q ss_pred             CCCCCccchhHHhh
Q psy8670         134 PNHTSNQHEWFKKS  147 (224)
Q Consensus       134 ~nh~~~~~~w~~~~  147 (224)
                      +||||.+|+|+++.
T Consensus       207 ~NHTa~ds~Wl~eH  220 (1464)
T TIGR01531       207 FNHTANNSPWLLEH  220 (1464)
T ss_pred             ecccccCCHHHHhC
Confidence            99999999999943

glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.

>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme

Probab=99.47  E-value=2e-13  Score=122.58  Aligned_cols=87  Identities=23%  Similarity=0.462  Sum_probs=81.3

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCC------HHHHHHHHHHHH-HcCCEEEEe
Q psy8670          59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGD------LKDFETLKERLH-ALGIKILLD  131 (224)
Q Consensus        59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~------~~~~~~lv~~~h-~~gi~vilD  131 (224)
                      .|++.++.+.| +.++++|+|.|+++|+++.+.+++.|++.|...+||.+..      .++++++|++++ +.||..|.|
T Consensus        18 ~G~~~~W~~~l-~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~D   96 (423)
T PF14701_consen   18 MGPFSDWEKHL-KVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTD   96 (423)
T ss_pred             cCCHhHHHHHH-HHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEE
Confidence            59999999999 9999999999999999999888899999999999999754      379999999996 789999999


Q ss_pred             cCCCCCCccchhHHh
Q psy8670         132 FVPNHTSNQHEWFKK  146 (224)
Q Consensus       132 ~v~nh~~~~~~w~~~  146 (224)
                      +|+||||.+++|+++
T Consensus        97 vV~NHtA~nS~Wl~e  111 (423)
T PF14701_consen   97 VVLNHTANNSPWLRE  111 (423)
T ss_pred             EeeccCcCCChHHHh
Confidence            999999999999993

>PLN03244 alpha-amylase; Provisional

Probab=99.31  E-value=1.3e-11  Score=117.26  Aligned_cols=111  Identities=18%  Similarity=0.281  Sum_probs=80.4

Q ss_pred             CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHH
Q psy8670          40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE  119 (224)
Q Consensus        40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~  119 (224)
                      ...||+.|+...+  ....+|+++.++++                             +++|++++++|||++||++||+
T Consensus       400 ~lrIYE~HvGms~--~e~kv~ty~eF~~~-----------------------------vt~fFApssRYGTPeDLK~LVD  448 (872)
T PLN03244        400 SLRIYECHVGISG--SEPKISSFEEFTEK-----------------------------VTNFFAASSRYGTPDDFKRLVD  448 (872)
T ss_pred             CceEEEEEeeecC--CCCCcccHHHHhhc-----------------------------cCcccccCcccCCHHHHHHHHH
Confidence            4569999998864  34457899988885                             5689999999999999999999


Q ss_pred             HHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         120 RLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       120 ~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      +||++||+||||+|+||++.+.........+.  ...||..+   ..|....|.+       ..+||.++++++
T Consensus       449 ~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt--~~~Yf~~~---~~g~~~~WGs-------~~fnyg~~EVr~  510 (872)
T PLN03244        449 EAHGLGLLVFLDIVHSYAAADEMVGLSLFDGS--NDCYFHTG---KRGHHKHWGT-------RMFKYGDLDVLH  510 (872)
T ss_pred             HHHHCCCEEEEEecCccCCCccccchhhcCCC--ccceeccC---CCCccCCCCC-------ceecCCCHHHHH
Confidence            99999999999999999998765433333332  12355421   1232333322       357888888776

>KOG2212|consensus

Probab=99.15  E-value=6.9e-11  Score=102.66  Aligned_cols=91  Identities=21%  Similarity=0.316  Sum_probs=79.2

Q ss_pred             cCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-----CC--CCCCccCCCCcCCCCC
Q psy8670          37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-----AD--FGYDISDYLSFEPLFG  109 (224)
Q Consensus        37 w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-----~~--~gY~~~d~~~v~~~~G  109 (224)
                      |-.+..|.++|.+.+.           ++..+++..|+.-|+.+|+++|+.|.-.     ..  ..|+|++| +++.+-|
T Consensus        25 ~~~R~tmVHLFEWKW~-----------DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvSY-KL~tRSG   92 (504)
T KOG2212|consen   25 QQGRTTIVHLFEWKWV-----------DIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVSY-KLCTRSG   92 (504)
T ss_pred             hcCcceEEEEEEeehH-----------HHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccceE-EeeccCC
Confidence            3446889999988874           4999997889999999999999988621     11  36999998 9999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670         110 DLKDFETLKERLHALGIKILLDFVPNHTSN  139 (224)
Q Consensus       110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~~  139 (224)
                      .++||+.||++|.+-|+|+++|+|+||++.
T Consensus        93 NE~eF~dMV~RCN~VGVRiyVDvv~NHM~g  122 (504)
T KOG2212|consen   93 NEDEFRDMVTRCNNVGVRIYVDAVINHMCG  122 (504)
T ss_pred             CHHHHHHHHHHhhccceEEEehhhhhhhcc
Confidence            999999999999999999999999999984

>TIGR03852 sucrose_gtfA sucrose phosphorylase

Probab=98.90  E-value=1.2e-09  Score=100.22  Aligned_cols=56  Identities=34%  Similarity=0.619  Sum_probs=51.2

Q ss_pred             CCcceeecccccCCCCCCCCcchhhHH-----------------HHHHHhhcccCCCCCcHHHHHhhcC--CCCCC
Q psy8670         167 GVGAVWISPIFKSPMADFGYDISDYLR-----------------IKILLDFVPNHTSNQHEWFKKSLAN--IPPYS  223 (224)
Q Consensus       167 G~~~~w~~p~f~~~~~dlny~n~d~~~-----------------i~ii~d~v~nh~~~~~~W~~~~~~~--~~~~~  223 (224)
                      |++++|.+|+|.++ .|+||++.||++                 ++||+|+|+||+|.+|+||++++++  .++|+
T Consensus        30 ~v~~i~LlPffps~-sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~  104 (470)
T TIGR03852        30 AVGGVHLLPFFPST-GDRGFAPMDYTEVDPAFGDWSDVEALSEKYYLMFDFMINHISRQSEYYQDFLEKKDNSKYK  104 (470)
T ss_pred             hCCEEEECCCCcCC-CCCCcCchhhceeCcccCCHHHHHHHHHhhhHHhhhcccccccchHHHHHHHhcCCCCCcc
Confidence            68999999999998 499999999985                 6999999999999999999999987  56775

In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.

>KOG3625|consensus

Probab=98.87  E-value=2.8e-09  Score=101.94  Aligned_cols=89  Identities=24%  Similarity=0.432  Sum_probs=82.6

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCC------CHHHHHHHHHHHHHc-CCEEEEe
Q psy8670          59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFG------DLKDFETLKERLHAL-GIKILLD  131 (224)
Q Consensus        59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G------~~~~~~~lv~~~h~~-gi~vilD  131 (224)
                      .|.|..++.+| .-+++.|+|.|+++|+++-+.+.+.|+..|..++++.+.      +.+|+++||+.+|+. ||-.|.|
T Consensus       138 LGpl~eWeprL-~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~D  216 (1521)
T KOG3625|consen  138 LGPLDEWEPRL-RVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITD  216 (1521)
T ss_pred             cCChhhhhHHH-HHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeeh
Confidence            48999999999 999999999999999999988889999999999999986      789999999999965 9999999


Q ss_pred             cCCCCCCccchhHHhhh
Q psy8670         132 FVPNHTSNQHEWFKKSL  148 (224)
Q Consensus       132 ~v~nh~~~~~~w~~~~~  148 (224)
                      +|+||++.+++|+.+.-
T Consensus       217 vV~NHtAnns~WlleHP  233 (1521)
T KOG3625|consen  217 VVYNHTANNSKWLLEHP  233 (1521)
T ss_pred             hhhhccccCCchhHhCc
Confidence            99999999999998653

>PRK13840 sucrose phosphorylase; Provisional

Probab=98.76  E-value=2.3e-09  Score=98.86  Aligned_cols=59  Identities=34%  Similarity=0.487  Sum_probs=51.0

Q ss_pred             ccCCCcceeecccc-cCCCCCCCCcchhhHH-----------------HHHHHhhcccCCCCCcHHHHHhhcC--CCCCC
Q psy8670         164 HDLGVGAVWISPIF-KSPMADFGYDISDYLR-----------------IKILLDFVPNHTSNQHEWFKKSLAN--IPPYS  223 (224)
Q Consensus       164 ~~lG~~~~w~~p~f-~~~~~dlny~n~d~~~-----------------i~ii~d~v~nh~~~~~~W~~~~~~~--~~~~~  223 (224)
                      +.+ ++++|.+|+| .++..|.||++.||++                 |+||+|+|+||+|.+|+||++++++  .++|+
T Consensus        31 ~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~  109 (495)
T PRK13840         31 DGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGKTHDIMADLIVNHMSAESPQFQDVLAKGEASEYW  109 (495)
T ss_pred             HHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHhCCeEEEEECCCcCCCCcHHHHHHHHhCCCCCcc
Confidence            566 8899999999 4567899999999986                 5899999999999999999999755  55664

>PRK10933 trehalose-6-phosphate hydrolase; Provisional

Probab=98.57  E-value=1.6e-08  Score=95.14  Aligned_cols=63  Identities=48%  Similarity=0.985  Sum_probs=54.8

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++.+++|++.+|++|++.++..+++|+..||++                      |+||+|+|+||++..|+||+++.+.
T Consensus        40 dyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~  119 (551)
T PRK10933         40 DYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNK  119 (551)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCC
Confidence            445789999999999998887789999999864                      5899999999999999999998766


Q ss_pred             CCCCC
Q psy8670         219 IPPYS  223 (224)
Q Consensus       219 ~~~~~  223 (224)
                      ..+|+
T Consensus       120 ~~~y~  124 (551)
T PRK10933        120 ESPYR  124 (551)
T ss_pred             CCCCc
Confidence            66663

>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase

Probab=98.55  E-value=2e-08  Score=94.32  Aligned_cols=63  Identities=56%  Similarity=1.013  Sum_probs=55.2

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++.+.+|++.+|.+|++.++..+.+|+..||++                      |+||+|+|+||++.+|+||++++++
T Consensus        34 ~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~  113 (543)
T TIGR02403        34 DYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAG  113 (543)
T ss_pred             HHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccccccchHHHHHhhcC
Confidence            445789999999999999987788999999874                      5899999999999999999999877


Q ss_pred             CCCCC
Q psy8670         219 IPPYS  223 (224)
Q Consensus       219 ~~~~~  223 (224)
                      ..+|+
T Consensus       114 ~~~y~  118 (543)
T TIGR02403       114 DSPYR  118 (543)
T ss_pred             CCccc
Confidence            66664

Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.

>TIGR02456 treS_nterm trehalose synthase

Probab=98.48  E-value=4.7e-08  Score=91.81  Aligned_cols=58  Identities=48%  Similarity=0.966  Sum_probs=51.9

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++.+.+|++.+|.+|+|.++..+++|+..||++                      |+||+|+|+||++..|+||++++++
T Consensus        35 dyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~  114 (539)
T TIGR02456        35 DYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSN  114 (539)
T ss_pred             HHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhC
Confidence            445789999999999999887789999999875                      5899999999999999999998865

Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).

>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]

Probab=98.45  E-value=5.9e-08  Score=89.37  Aligned_cols=60  Identities=57%  Similarity=1.094  Sum_probs=54.6

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++.+.+|++.+|.+|++.+.+.+++|++.|+.+                      |++|+|+|+||++.+|+|+++....
T Consensus        36 dYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~  115 (505)
T COG0366          36 DYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSS  115 (505)
T ss_pred             hHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcC
Confidence            334789999999999999988999999999986                      4799999999999999999999988


Q ss_pred             CC
Q psy8670         219 IP  220 (224)
Q Consensus       219 ~~  220 (224)
                      .+
T Consensus       116 ~~  117 (505)
T COG0366         116 KP  117 (505)
T ss_pred             CC
Confidence            75

>PRK10785 maltodextrin glucosidase; Provisional

Probab=98.39  E-value=9.4e-08  Score=90.80  Aligned_cols=58  Identities=40%  Similarity=0.772  Sum_probs=50.5

Q ss_pred             chhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhc
Q psy8670         160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLA  217 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~  217 (224)
                      +++++++|++.+|++|+|.++ ..++|+..||++                      ||||+|+|+||++..|+||++...
T Consensus       185 LdYL~~LGv~~I~L~Pif~s~-s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~  263 (598)
T PRK10785        185 LPYLKKLGVTALYLNPIFTAP-SVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNR  263 (598)
T ss_pred             HHHHHHcCCCEEEeCCcccCC-CCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhc
Confidence            345678999999999999987 579999999975                      589999999999999999998764


Q ss_pred             C
Q psy8670         218 N  218 (224)
Q Consensus       218 ~  218 (224)
                      +
T Consensus       264 ~  264 (598)
T PRK10785        264 G  264 (598)
T ss_pred             c
Confidence            3

>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type

Probab=98.37  E-value=9.4e-08  Score=89.81  Aligned_cols=97  Identities=19%  Similarity=0.261  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHcCCEEEEecCCCCCC--ccchhHHhhhcCCCCccccccchhcccCCCcceeecccccC---------CC
Q psy8670         113 DFETLKERLHALGIKILLDFVPNHTS--NQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKS---------PM  181 (224)
Q Consensus       113 ~~~~lv~~~h~~gi~vilD~v~nh~~--~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~---------~~  181 (224)
                      +-+.++++|     .|-+.+-+--.-  .+.+.+ .++      .+==.|++.+.+|++++|.+|++.+         ++
T Consensus        43 ~p~~~~~~a-----~~W~~~~P~s~i~~~~~s~~-~~L------~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~  110 (688)
T TIGR02455        43 QPRDASAIA-----SVWFTAYPAAIIAPEGCSVL-EAL------ADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPS  110 (688)
T ss_pred             ChHHHHhhc-----CeeEEecchhhcCCCCCcHH-HHh------cChHHHHHHHHhCCCEEEeCcceecccccccCCCCC
Confidence            345677777     676666553322  222222 222      1222466668899999999999999         88


Q ss_pred             CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcCCCCCC
Q psy8670         182 ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLANIPPYS  223 (224)
Q Consensus       182 ~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~~~~~~  223 (224)
                      .|.||+..|+ +                      ++||+|+|+||||..|+ |+.+..+..+|+
T Consensus       111 ~D~gyDi~d~-~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghd-F~lAr~~~~~Y~  172 (688)
T TIGR02455       111 IDGNFDRISF-DIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGAD-FRLAELAHGDYP  172 (688)
T ss_pred             CCCCCCcccC-ccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcc-hHHHhhcCCCCC
Confidence            9999999985 3                      58999999999999999 999998877775

Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.

>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3

Probab=98.30  E-value=2e-06  Score=80.95  Aligned_cols=97  Identities=20%  Similarity=0.440  Sum_probs=59.2

Q ss_pred             CCceEEEEec--ccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCC--------CCCCCccCCCCc----
Q psy8670          39 QTSVFYHLYP--RSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA--------DFGYDISDYLSF----  104 (224)
Q Consensus        39 ~~~viY~i~~--~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~--------~~gY~~~d~~~v----  104 (224)
                      ...+|||=|-  ..|...  ...-+-.-|.+.. +-+|++|||..++.|-+.++..        .-||+-+|-+++    
T Consensus       563 DSqvIYEgFSNFQ~~~t~--~~eytN~~IA~Na-~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~  639 (809)
T PF02324_consen  563 DSQVIYEGFSNFQDFPTT--PSEYTNVVIAKNA-DLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSK  639 (809)
T ss_dssp             HT-EEEE---TTB---SS--GGGSHHHHHHHTH-HHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS
T ss_pred             hcchhhccccccccCCCC--hHHHHHHHHHHhH-HHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCC
Confidence            4567898442  122111  1112335566667 9999999999999999887532        258999998876    


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670         105 EPLFGDLKDFETLKERLHALGIKILLDFVPNHTS  138 (224)
Q Consensus       105 ~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~  138 (224)
                      ..+||+.+||+.-++++|+.||+||.|+|++.+-
T Consensus       640 ptKYGs~~dL~~AikALH~~GiqviaDwVpdQiY  673 (809)
T PF02324_consen  640 PTKYGSVEDLRNAIKALHAAGIQVIADWVPDQIY  673 (809)
T ss_dssp             -BTTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE-
T ss_pred             CCCCCCHHHHHHHHHHHHHcCcchhhhhchHhhh
Confidence            4679999999999999999999999999999754

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.

>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3

Probab=98.20  E-value=1e-07  Score=81.69  Aligned_cols=57  Identities=60%  Similarity=1.092  Sum_probs=49.4

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhc
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLA  217 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~  217 (224)
                      ++++.+|++.+|++|++.++...++|+..||++                      |+||+|+|+||++..|+|+++..+
T Consensus        11 dyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~~~   89 (316)
T PF00128_consen   11 DYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDHPWFQDSLN   89 (316)
T ss_dssp             HHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTSHHHHHHHT
T ss_pred             HHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeecccccccccccccccc
Confidence            345789999999999999876789999998864                      589999999999999999988776

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....

>KOG0471|consensus

Probab=98.15  E-value=3.5e-07  Score=85.93  Aligned_cols=62  Identities=47%  Similarity=0.821  Sum_probs=55.3

Q ss_pred             hcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcCC
Q psy8670         162 RLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLANI  219 (224)
Q Consensus       162 ~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~~  219 (224)
                      +.+++|....|.+|++++.+++++|+..|+.+                      |++|+|+|+||++.+|+||.++....
T Consensus        48 yi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~  127 (545)
T KOG0471|consen   48 YIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSK  127 (545)
T ss_pred             HHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeeccccCCccccccccCcccc
Confidence            34678999999999999999999999999986                      58999999999999999999988877


Q ss_pred             CCCC
Q psy8670         220 PPYS  223 (224)
Q Consensus       220 ~~~~  223 (224)
                      ..|+
T Consensus       128 ~~y~  131 (545)
T KOG0471|consen  128 TGYE  131 (545)
T ss_pred             ccce
Confidence            6653

>PF14872 GHL5: Hypothetical glycoside hydrolase 5

Probab=98.03  E-value=5.4e-05  Score=71.06  Aligned_cols=98  Identities=21%  Similarity=0.335  Sum_probs=73.3

Q ss_pred             ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHH---------------cCCCeEEEcCcccCC---------------
Q psy8670          41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHD---------------LGVGAVWISPIFKSP---------------   90 (224)
Q Consensus        41 ~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~---------------lG~~~i~l~Pi~~~~---------------   90 (224)
                      ..|.|||+..-+.     .|+|.|+++.. ..|++               .|+++|+|+||-+.-               
T Consensus       179 ~nILQiHv~TAsp-----~GtlaGLT~iy-qria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~  252 (811)
T PF14872_consen  179 RNILQIHVGTASP-----EGTLAGLTRIY-QRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSI  252 (811)
T ss_pred             ceeEEEecCCCCC-----CcchHHHHHHH-HHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeee
Confidence            6699999988654     68998888776 66543               599999999985320               


Q ss_pred             -----------------------------CCCCCCCcc--CCCCcCCC-CC--CHHHHHHHHHHHHH---cCCEEEEecC
Q psy8670          91 -----------------------------MADFGYDIS--DYLSFEPL-FG--DLKDFETLKERLHA---LGIKILLDFV  133 (224)
Q Consensus        91 -----------------------------~~~~gY~~~--d~~~v~~~-~G--~~~~~~~lv~~~h~---~gi~vilD~v  133 (224)
                                                   ..+|||++.  ..-+.||. ++  .++|+-+||+++|.   ..|+||.|+|
T Consensus       253 ~~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlV  332 (811)
T PF14872_consen  253 RPEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLV  332 (811)
T ss_pred             cccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeee
Confidence                                         124788765  33456666 33  37999999999994   6899999999


Q ss_pred             CCCCCccchhH
Q psy8670         134 PNHTSNQHEWF  144 (224)
Q Consensus       134 ~nh~~~~~~w~  144 (224)
                      +.|.-+.+.=+
T Consensus       333 yGHADNQ~~~L  343 (811)
T PF14872_consen  333 YGHADNQALDL  343 (811)
T ss_pred             cccccchhhHh
Confidence            99987765433

>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase

Probab=97.99  E-value=1.8e-06  Score=83.97  Aligned_cols=60  Identities=35%  Similarity=0.723  Sum_probs=51.1

Q ss_pred             hhcccCCCcceeecccccC-CCCCCCCcchhhHH----------------------HHHHHhhcccCCCCC---cHHHHH
Q psy8670         161 ARLHDLGVGAVWISPIFKS-PMADFGYDISDYLR----------------------IKILLDFVPNHTSNQ---HEWFKK  214 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~-~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~---~~W~~~  214 (224)
                      ++.+.+|++.+|.+|+|.+ +..+++|+..|+.+                      |++|+|+|+||++..   |+||++
T Consensus        23 ~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a~~~~~n~wf~d  102 (825)
T TIGR02401        23 PYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMAVHLEQNPWWWD  102 (825)
T ss_pred             HHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccccccccChHHHH
Confidence            4457899999999999986 45779999998874                      589999999999976   899999


Q ss_pred             hhcCCC
Q psy8670         215 SLANIP  220 (224)
Q Consensus       215 ~~~~~~  220 (224)
                      ++++++
T Consensus       103 vl~~g~  108 (825)
T TIGR02401       103 VLKNGP  108 (825)
T ss_pred             HHHhCC
Confidence            988754

This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.

>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional

Probab=97.90  E-value=3.5e-06  Score=87.08  Aligned_cols=62  Identities=42%  Similarity=0.739  Sum_probs=52.5

Q ss_pred             hhcccCCCcceeecccccC-CCCCCCCcchhhHH----------------------HHHHHhhcccCCC---CCcHHHHH
Q psy8670         161 ARLHDLGVGAVWISPIFKS-PMADFGYDISDYLR----------------------IKILLDFVPNHTS---NQHEWFKK  214 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~-~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~---~~~~W~~~  214 (224)
                      ++.+.+|++.+|.+|+|.+ +...++|+..||.+                      |++|+|+|+||++   ..|+||++
T Consensus       765 ~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~~~~~~n~w~~d  844 (1693)
T PRK14507        765 PYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMGVGGADNPWWLD  844 (1693)
T ss_pred             HHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccCCCccCCHHHHH
Confidence            4457899999999999995 56789999999974                      5899999999998   58999999


Q ss_pred             hhcCCC--CC
Q psy8670         215 SLANIP--PY  222 (224)
Q Consensus       215 ~~~~~~--~~  222 (224)
                      +.++++  +|
T Consensus       845 vl~~g~~S~y  854 (1693)
T PRK14507        845 VLENGPASPA  854 (1693)
T ss_pred             HHHhCCCCCc
Confidence            987543  55

>PRK14511 maltooligosyl trehalose synthase; Provisional

Probab=97.85  E-value=4.5e-06  Score=81.56  Aligned_cols=60  Identities=35%  Similarity=0.665  Sum_probs=50.2

Q ss_pred             hhcccCCCcceeecccccC-CCCCCCCcchhhHH----------------------HHHHHhhcccCCCCC---cHHHHH
Q psy8670         161 ARLHDLGVGAVWISPIFKS-PMADFGYDISDYLR----------------------IKILLDFVPNHTSNQ---HEWFKK  214 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~-~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~---~~W~~~  214 (224)
                      ++.+.+|++.+|.+|++.+ +...++|+..|+.+                      |++|+|+|+||++..   |+||++
T Consensus        27 ~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~~~~~~n~ww~d  106 (879)
T PRK14511         27 PYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMAVGGPDNPWWWD  106 (879)
T ss_pred             HHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccCcCccCHHHHH
Confidence            3457899999999999986 45789999998864                      589999999999874   589999


Q ss_pred             hhcCCC
Q psy8670         215 SLANIP  220 (224)
Q Consensus       215 ~~~~~~  220 (224)
                      ..++++
T Consensus       107 vl~~g~  112 (879)
T PRK14511        107 VLEWGR  112 (879)
T ss_pred             HHHhCC
Confidence            988654

>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]

Probab=97.50  E-value=3.1e-05  Score=73.71  Aligned_cols=60  Identities=35%  Similarity=0.737  Sum_probs=50.7

Q ss_pred             hhcccCCCcceeecccccC-CCCCCCCcchhhHH----------------------HHHHHhhcccCCC---CCcHHHHH
Q psy8670         161 ARLHDLGVGAVWISPIFKS-PMADFGYDISDYLR----------------------IKILLDFVPNHTS---NQHEWFKK  214 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~-~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~---~~~~W~~~  214 (224)
                      ++.+++|+...|.||+|.. +-+.|||++.|.-+                      +-+|+|+|+||.+   .+++|+.+
T Consensus        26 ~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~g~~N~ww~D  105 (889)
T COG3280          26 DYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVGGHENPWWWD  105 (889)
T ss_pred             HHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhcccccChHHHH
Confidence            3347899999999999986 45789999998865                      3699999999944   66999999


Q ss_pred             hhcCCC
Q psy8670         215 SLANIP  220 (224)
Q Consensus       215 ~~~~~~  220 (224)
                      ++++++
T Consensus       106 VLe~G~  111 (889)
T COG3280         106 VLENGR  111 (889)
T ss_pred             HHHhCc
Confidence            999865

>PF14871 GHL6: Hypothetical glycosyl hydrolase 6

Probab=97.47  E-value=0.00034  Score=53.94  Aligned_cols=80  Identities=13%  Similarity=0.035  Sum_probs=55.8

Q ss_pred             HHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhh
Q psy8670          68 KLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS  147 (224)
Q Consensus        68 ~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~  147 (224)
                      +++++|+++|+++|.+.-   .....+-|-|+.....+|.++ .+-|+++|++||++||+|+.=+-++   .+....+  
T Consensus         4 ~~~~~lk~~~v~si~i~a---~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~---~d~~~~~--   74 (132)
T PF14871_consen    4 QFVDTLKEAHVNSITIFA---KCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFS---WDEDAAE--   74 (132)
T ss_pred             HHHHHHHHhCCCEEEEEc---ccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeee---cChHHHH--
Confidence            334899999999997633   111113345555556788888 7889999999999999998755444   3334444  


Q ss_pred             hcCCCCccccccch
Q psy8670         148 LANIPPYKCASLLA  161 (224)
Q Consensus       148 ~~~~~~~~~~f~w~  161 (224)
                           .+++|+.-+
T Consensus        75 -----~HPeW~~~~   83 (132)
T PF14871_consen   75 -----RHPEWFVRD   83 (132)
T ss_pred             -----hCCceeeEC
Confidence                 788898743

>smart00642 Aamy Alpha-amylase domain

Probab=97.33  E-value=4.1e-05  Score=61.30  Aligned_cols=46  Identities=63%  Similarity=1.075  Sum_probs=39.5

Q ss_pred             hcccCCCcceeecccccCCC---CCCCCcchhhHH----------------------HHHHHhhcccCCCC
Q psy8670         162 RLHDLGVGAVWISPIFKSPM---ADFGYDISDYLR----------------------IKILLDFVPNHTSN  207 (224)
Q Consensus       162 ~~~~lG~~~~w~~p~f~~~~---~dlny~n~d~~~----------------------i~ii~d~v~nh~~~  207 (224)
                      +.+++|++.+|.+|++.+..   .+.+|+..||++                      |+||+|+|+||++.
T Consensus        27 yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~   97 (166)
T smart00642       27 YLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD   97 (166)
T ss_pred             HHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence            34789999999999998875   788998888763                      58999999999987

>PRK09441 cytoplasmic alpha-amylase; Reviewed

Probab=97.29  E-value=3.4e-05  Score=71.58  Aligned_cols=52  Identities=37%  Similarity=0.720  Sum_probs=42.9

Q ss_pred             hcccCCCcceeecccccCC--CCCCCCcchhhH---------H----------------------HHHHHhhcccCCCC-
Q psy8670         162 RLHDLGVGAVWISPIFKSP--MADFGYDISDYL---------R----------------------IKILLDFVPNHTSN-  207 (224)
Q Consensus       162 ~~~~lG~~~~w~~p~f~~~--~~dlny~n~d~~---------~----------------------i~ii~d~v~nh~~~-  207 (224)
                      +++++|++.+|++|++.+.  ...++|+..||+         +                      |+||+|+|+||++. 
T Consensus        30 yl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~  109 (479)
T PRK09441         30 ELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADVVLNHKAGA  109 (479)
T ss_pred             HHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccCC
Confidence            3478999999999999874  356899999886         1                      58999999999985 


Q ss_pred             -CcHHHH
Q psy8670         208 -QHEWFK  213 (224)
Q Consensus       208 -~~~W~~  213 (224)
                       .|+|++
T Consensus       110 ~~~~~~~  116 (479)
T PRK09441        110 DEKETFR  116 (479)
T ss_pred             Ccceeee
Confidence             456886

>TIGR01531 glyc_debranch glycogen debranching enzymye

Probab=96.93  E-value=0.0003  Score=71.57  Aligned_cols=65  Identities=22%  Similarity=0.332  Sum_probs=49.9

Q ss_pred             Cccccc-cchhcccCCCcceeecccccCCCCCCCCcchhhHH---------------------------HHHHHhhcccC
Q psy8670         153 PYKCAS-LLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR---------------------------IKILLDFVPNH  204 (224)
Q Consensus       153 ~~~~~f-~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~---------------------------i~ii~d~v~nh  204 (224)
                      ++.+|= .++..+++|++.+|.+|++..+.+..-|+..|+++                           |++|+|+|.||
T Consensus       130 ~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~NH  209 (1464)
T TIGR01531       130 PLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVFNH  209 (1464)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeeecc
Confidence            555552 23567889999999999996554566677666653                           46999999999


Q ss_pred             CCCCcHHHHHhhc
Q psy8670         205 TSNQHEWFKKSLA  217 (224)
Q Consensus       205 ~~~~~~W~~~~~~  217 (224)
                      |+..|+|+++..+
T Consensus       210 Ta~ds~Wl~eHPE  222 (1464)
T TIGR01531       210 TANNSPWLLEHPE  222 (1464)
T ss_pred             cccCCHHHHhChH
Confidence            9999999997644

glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.

>PLN00196 alpha-amylase; Provisional

Probab=96.91  E-value=0.00019  Score=65.67  Aligned_cols=48  Identities=25%  Similarity=0.538  Sum_probs=38.8

Q ss_pred             hcccCCCcceeecccccCCCCCCCCcchhhHH-----------------------HHHHHhhcccCCCCCcH
Q psy8670         162 RLHDLGVGAVWISPIFKSPMADFGYDISDYLR-----------------------IKILLDFVPNHTSNQHE  210 (224)
Q Consensus       162 ~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~-----------------------i~ii~d~v~nh~~~~~~  210 (224)
                      +++++|++.+|.+|++.+. ..++|+..|+++                       |+||+|+|+||++..+.
T Consensus        52 yL~~LGvtaIWL~P~~~s~-s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~~~~~  122 (428)
T PLN00196         52 DIAAAGITHVWLPPPSHSV-SEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHK  122 (428)
T ss_pred             HHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcccccc
Confidence            3478999999999999875 567887666542                       68999999999997664

>PRK09505 malS alpha-amylase; Reviewed

Probab=96.84  E-value=0.00024  Score=68.56  Aligned_cols=54  Identities=41%  Similarity=0.592  Sum_probs=42.2

Q ss_pred             hhcccCCCcceeecccccCC--------------CCCCCCcchhhHH----------------------HHHHHhhcccC
Q psy8670         161 ARLHDLGVGAVWISPIFKSP--------------MADFGYDISDYLR----------------------IKILLDFVPNH  204 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~--------------~~dlny~n~d~~~----------------------i~ii~d~v~nh  204 (224)
                      ++.+++|++.+|.+|++.+.              ...++|+..||.+                      |+||+|+|+||
T Consensus       237 dyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH  316 (683)
T PRK09505        237 DYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNH  316 (683)
T ss_pred             HHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCC
Confidence            44677999999999998751              3568999888764                      68999999999


Q ss_pred             CCC------CcHHHHH
Q psy8670         205 TSN------QHEWFKK  214 (224)
Q Consensus       205 ~~~------~~~W~~~  214 (224)
                      ++.      .++||++
T Consensus       317 ~~~~~~~d~~~~~f~~  332 (683)
T PRK09505        317 TGYATLADMQEFQFGA  332 (683)
T ss_pred             Ccccccccccccchhh
Confidence            994      3456665

>PRK12313 glycogen branching enzyme; Provisional

Probab=96.66  E-value=0.00036  Score=67.01  Aligned_cols=52  Identities=25%  Similarity=0.674  Sum_probs=42.9

Q ss_pred             hhcccCCCcceeecccccCCC-CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHH
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWF  212 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~  212 (224)
                      ++.+++|++.+|++|++..+. ..++|+..+|+.                      |+||||+|+||++..+.++
T Consensus       178 ~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~~  252 (633)
T PRK12313        178 PYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDDDGL  252 (633)
T ss_pred             HHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCcccc
Confidence            667899999999999998764 457898888874                      6899999999998765433

>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function

Probab=96.56  E-value=0.022  Score=50.14  Aligned_cols=71  Identities=15%  Similarity=0.105  Sum_probs=41.6

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCC--CHHHHHHHHHHHHHcCCEEEEec
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFG--DLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G--~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      +-+.+.+-+ +.|+++|+|+|.+-=-..... ..+.+.+..-+......+  +.+-|+.+|++||++||+|..=+
T Consensus        17 ~~~~~~~~l-~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~   90 (311)
T PF02638_consen   17 SKEQIDEML-DDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWF   90 (311)
T ss_pred             CHHHHHHHH-HHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEE
Confidence            345566666 999999999998752211100 111122211111111111  35789999999999999996544

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=96.54  E-value=0.00056  Score=65.44  Aligned_cols=54  Identities=24%  Similarity=0.620  Sum_probs=43.7

Q ss_pred             hhcccCCCcceeecccccCCC-CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHH
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKK  214 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~  214 (224)
                      ++.+++|++.+|++|++..+. ..++|+..+|+.                      |+||||+|+||++..+..+..
T Consensus       164 dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~  240 (613)
T TIGR01515       164 PYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLAE  240 (613)
T ss_pred             HHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchhhc
Confidence            567889999999999998753 347888887763                      689999999999987766543

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>PF14488 DUF4434: Domain of unknown function (DUF4434)

Probab=96.30  E-value=0.029  Score=44.89  Aligned_cols=72  Identities=10%  Similarity=0.159  Sum_probs=50.7

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH  136 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh  136 (224)
                      +-+.+.+.+ .+++++|+++|.|.=   .......+.+.++..-.-..+..+-+..++++|.+.||+|.+-+-.+.
T Consensus        18 ~~~~W~~~~-~~m~~~GidtlIlq~---~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~   89 (166)
T PF14488_consen   18 TPAQWREEF-RAMKAIGIDTLILQW---TGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDP   89 (166)
T ss_pred             CHHHHHHHH-HHHHHcCCcEEEEEE---eecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCc
Confidence            457788999 999999999998761   111122233444411112236678899999999999999999998773

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.28  E-value=0.00093  Score=65.14  Aligned_cols=53  Identities=26%  Similarity=0.576  Sum_probs=42.9

Q ss_pred             hhcccCCCcceeecccccCCC-CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHH
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFK  213 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~  213 (224)
                      ++.+++|++.+|++|++..+. ..++|+..+|+.                      |+||||+|+||++..+..+.
T Consensus       273 ~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~  348 (726)
T PRK05402        273 PYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDAHGLA  348 (726)
T ss_pred             HHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccchh
Confidence            567889999999999988653 357899888874                      58999999999987655443

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=96.27  E-value=0.00079  Score=63.51  Aligned_cols=53  Identities=30%  Similarity=0.503  Sum_probs=41.7

Q ss_pred             chhcccCCCcceeecccccCC-CCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHH
Q psy8670         160 LARLHDLGVGAVWISPIFKSP-MADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWF  212 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~-~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~  212 (224)
                      +++++++|++.+|++|++..+ ....+|+..+|+.                      |+||||+|+||++.++.++
T Consensus       117 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~  192 (542)
T TIGR02402       117 LPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNYL  192 (542)
T ss_pred             hHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCccccc
Confidence            356688999999999998754 2457888777653                      6899999999998776554

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>PLN02361 alpha-amylase

Probab=95.94  E-value=0.0016  Score=59.12  Aligned_cols=43  Identities=28%  Similarity=0.458  Sum_probs=36.7

Q ss_pred             cccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCC
Q psy8670         163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTS  206 (224)
Q Consensus       163 ~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~  206 (224)
                      ++++|++.+|++|++.+. ..++|...|+++                      |++|+|+|+||++
T Consensus        38 l~~lG~t~iwl~P~~~~~-~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~  102 (401)
T PLN02361         38 LAKSGFTSAWLPPPSQSL-APEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRV  102 (401)
T ss_pred             HHHcCCCEEEeCCCCcCC-CCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccccc
Confidence            478999999999999875 458999888764                      5899999999974

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=95.91  E-value=0.0018  Score=62.78  Aligned_cols=51  Identities=33%  Similarity=0.537  Sum_probs=38.6

Q ss_pred             chhcccCCCcceeecccccCCCC----------CCCCcchhhHH-------------------------HHHHHhhcccC
Q psy8670         160 LARLHDLGVGAVWISPIFKSPMA----------DFGYDISDYLR-------------------------IKILLDFVPNH  204 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~~----------dlny~n~d~~~-------------------------i~ii~d~v~nh  204 (224)
                      +++++++|++.+|++|++.....          .++|+..+|+.                         |+||||+|+||
T Consensus       190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NH  269 (688)
T TIGR02100       190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNH  269 (688)
T ss_pred             hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCC
Confidence            46778999999999999875321          25677655542                         58999999999


Q ss_pred             CCCCcH
Q psy8670         205 TSNQHE  210 (224)
Q Consensus       205 ~~~~~~  210 (224)
                      ++..+.
T Consensus       270 t~~~~~  275 (688)
T TIGR02100       270 TAEGNE  275 (688)
T ss_pred             ccCcCC
Confidence            987653

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>PRK03705 glycogen debranching enzyme; Provisional

Probab=95.62  E-value=0.003  Score=60.94  Aligned_cols=48  Identities=29%  Similarity=0.489  Sum_probs=35.8

Q ss_pred             chhcccCCCcceeecccccCCC----------CCCCCcchhh------------------HH---------HHHHHhhcc
Q psy8670         160 LARLHDLGVGAVWISPIFKSPM----------ADFGYDISDY------------------LR---------IKILLDFVP  202 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~----------~dlny~n~d~------------------~~---------i~ii~d~v~  202 (224)
                      +++++++|++.+|++|++....          ...||+..+|                  .+         |+||||+|+
T Consensus       185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~  264 (658)
T PRK03705        185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDVVF  264 (658)
T ss_pred             hHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcc
Confidence            5677899999999999987531          1245554444                  22         689999999


Q ss_pred             cCCCC
Q psy8670         203 NHTSN  207 (224)
Q Consensus       203 nh~~~  207 (224)
                      ||++.
T Consensus       265 NHt~~  269 (658)
T PRK03705        265 NHSAE  269 (658)
T ss_pred             cCccC
Confidence            99986

>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.52  E-value=0.19  Score=45.79  Aligned_cols=71  Identities=8%  Similarity=-0.011  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCC--CCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670          59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDY--LSFEPLFGDLKDFETLKERLHALGIKILL  130 (224)
Q Consensus        59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~--~~v~~~~G~~~~~~~lv~~~h~~gi~vil  130 (224)
                      ..+=..+.+.+ +.|++||||+|+..=.-.... ..+...+..=  .-+-..-++-+-+..+|++||++||+|+-
T Consensus        60 ~~~~~el~~~l-d~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~a  133 (418)
T COG1649          60 LFQRQELKDIL-DDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHA  133 (418)
T ss_pred             cccHHHHHHHH-HHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeee
Confidence            44556677778 999999999998763222110 0011111110  00111123456799999999999999954

>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3

Probab=95.52  E-value=0.025  Score=47.78  Aligned_cols=61  Identities=21%  Similarity=0.404  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670          65 MIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP  134 (224)
Q Consensus        65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~  134 (224)
                      ..+.+ +.++++|+++|-|.-..+... ...++      .+++  ...+.|+++|++|+++||+||+|+--
T Consensus        23 ~~~~~-~~~~~~G~n~VRi~v~~~~~~~~~~~~------~~~~--~~~~~ld~~v~~a~~~gi~vild~h~   84 (281)
T PF00150_consen   23 TEADF-DQLKALGFNTVRIPVGWEAYQEPNPGY------NYDE--TYLARLDRIVDAAQAYGIYVILDLHN   84 (281)
T ss_dssp             HHHHH-HHHHHTTESEEEEEEESTSTSTTSTTT------SBTH--HHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred             HHHHH-HHHHHCCCCEEEeCCCHHHhcCCCCCc------cccH--HHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            45556 999999999999976542211 11111      1111  23588999999999999999999944

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....

>TIGR02104 pulA_typeI pullulanase, type I

Probab=95.15  E-value=0.0038  Score=59.72  Aligned_cols=55  Identities=36%  Similarity=0.618  Sum_probs=38.8

Q ss_pred             chhcccCCCcceeecccccCCC---------CCCCCcchhhH---------------------H---------HHHHHhh
Q psy8670         160 LARLHDLGVGAVWISPIFKSPM---------ADFGYDISDYL---------------------R---------IKILLDF  200 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~---------~dlny~n~d~~---------------------~---------i~ii~d~  200 (224)
                      +++++++|++.+|++|++....         -.++|+..+|+                     +         |+||||+
T Consensus       170 LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDv  249 (605)
T TIGR02104       170 LDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDV  249 (605)
T ss_pred             HHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEE
Confidence            4667899999999999987532         12566654442                     1         5899999


Q ss_pred             cccCCCC-CcHHHHH
Q psy8670         201 VPNHTSN-QHEWFKK  214 (224)
Q Consensus       201 v~nh~~~-~~~W~~~  214 (224)
                      |+||++. .+.+|+.
T Consensus       250 V~NH~~~~~~~~f~~  264 (605)
T TIGR02104       250 VYNHTYSREESPFEK  264 (605)
T ss_pred             EcCCccCCCCCcccC
Confidence            9999963 4445543

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>PLN02960 alpha-amylase

Probab=95.03  E-value=0.0066  Score=59.73  Aligned_cols=51  Identities=16%  Similarity=0.410  Sum_probs=41.3

Q ss_pred             chhcccCCCcceeecccccCC-CCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcH
Q psy8670         160 LARLHDLGVGAVWISPIFKSP-MADFGYDISDYLR----------------------IKILLDFVPNHTSNQHE  210 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~-~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~  210 (224)
                      +++.+++|++.+|++|++..+ ....||+..+|+.                      |+||||+|+||++..+.
T Consensus       423 LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~  496 (897)
T PLN02960        423 LPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEM  496 (897)
T ss_pred             HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEecccccCCccc
Confidence            567789999999999998753 2447888777763                      58999999999998754

>PRK14705 glycogen branching enzyme; Provisional

Probab=94.84  E-value=0.0087  Score=61.14  Aligned_cols=57  Identities=28%  Similarity=0.619  Sum_probs=42.6

Q ss_pred             hhcccCCCcceeecccccCCC-CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhc
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLA  217 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~  217 (224)
                      ++.+++|++.+|++|++..+. ...||+..+|+.                      |+||||+|+||++... |.....+
T Consensus       773 dYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~-~~l~~fd  851 (1224)
T PRK14705        773 DYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDS-WALAQFD  851 (1224)
T ss_pred             HHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcch-hhhhhcC
Confidence            566889999999999987653 336788777763                      6899999999997663 5444444


Q ss_pred             C
Q psy8670         218 N  218 (224)
Q Consensus       218 ~  218 (224)
                      +
T Consensus       852 g  852 (1224)
T PRK14705        852 G  852 (1224)
T ss_pred             C
Confidence            4

>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose

Probab=94.57  E-value=0.28  Score=42.84  Aligned_cols=112  Identities=20%  Similarity=0.332  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHHHHHHcC--CCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670          61 DLKGMIEKLPEHLHDLG--VGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHT  137 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG--~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~  137 (224)
                      +-+.+.+.+ +.+++.|  ++.++|=.=+..     +|.-.+| ..|+ +|.+   .++|++++|++|+++++-+.+ ++
T Consensus        22 ~~~~v~~~~-~~~~~~~iP~d~~~lD~~w~~-----~~~~~~f-~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~i   90 (308)
T cd06593          22 DEEEVNEFA-DGMRERNLPCDVIHLDCFWMK-----EFQWCDF-EFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-YI   90 (308)
T ss_pred             CHHHHHHHH-HHHHHcCCCeeEEEEeccccc-----CCcceee-EECcccCCC---HHHHHHHHHHCCCeEEEEecC-CC
Confidence            445666666 8889999  677777654432     2222243 6664 5764   579999999999999999887 67


Q ss_pred             CccchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         138 SNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       138 ~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      +.+++.|++..+     .+||+-+..   |  ..+....+.....-++|.||+.++
T Consensus        91 ~~~~~~~~e~~~-----~g~~v~~~~---g--~~~~~~~w~g~~~~~Dftnp~a~~  136 (308)
T cd06593          91 AQKSPLFKEAAE-----KGYLVKKPD---G--SVWQWDLWQPGMGIIDFTNPDACK  136 (308)
T ss_pred             CCCchhHHHHHH-----CCeEEECCC---C--CeeeecccCCCcccccCCCHHHHH
Confidence            777777764432     345552211   1  111111111222346788888775

YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.

>PRK14508 4-alpha-glucanotransferase; Provisional

Probab=94.49  E-value=0.092  Score=49.16  Aligned_cols=56  Identities=27%  Similarity=0.360  Sum_probs=47.4

Q ss_pred             CCCCCCHH-HHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHH
Q psy8670          56 GDGVGDLK-GMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLK  112 (224)
Q Consensus        56 ~~~~g~l~-~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~  112 (224)
                      +-|+|+|- ++.+-+ +.+++.|++.+.++|+.+.....+.|++.+=+.+||-|=+.+
T Consensus        19 ~~GiGDfg~dl~~~i-d~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~alnplyI~l~   75 (497)
T PRK14508         19 SYGIGDFGKGAYEFI-DFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAGNPLLIDLE   75 (497)
T ss_pred             CCCCcchHHHHHHHH-HHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccChhhcChh
Confidence            34689995 877777 999999999999999999877778999999899998875543

>PLN02784 alpha-amylase

Probab=94.46  E-value=0.0092  Score=58.61  Aligned_cols=44  Identities=39%  Similarity=0.549  Sum_probs=37.2

Q ss_pred             cccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCC
Q psy8670         163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSN  207 (224)
Q Consensus       163 ~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~  207 (224)
                      .+.+|++.+|+.|++.+. ..+||...|+++                      |++|+|+|+||++.
T Consensus       530 L~~LG~taIWLpP~~~s~-s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag  595 (894)
T PLN02784        530 LSSLGFTVVWLPPPTESV-SPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCA  595 (894)
T ss_pred             HHHhCCCEEEeCCCCCCC-CCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccc
Confidence            466899999999998775 568999888764                      58999999999875

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=94.06  E-value=0.012  Score=57.37  Aligned_cols=50  Identities=30%  Similarity=0.659  Sum_probs=40.5

Q ss_pred             chhcccCCCcceeecccccCCC-CCCCCcchhhHH----------------------HHHHHhhcccCCCCCc
Q psy8670         160 LARLHDLGVGAVWISPIFKSPM-ADFGYDISDYLR----------------------IKILLDFVPNHTSNQH  209 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~  209 (224)
                      +++.+++|++.+|++|++..+. ..+||+..+|+.                      |+||||+|+||++..+
T Consensus       257 L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~  329 (758)
T PLN02447        257 LPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNT  329 (758)
T ss_pred             HHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccccccccc
Confidence            4667889999999999998653 457888877764                      5899999999998754

>PLN02635 disproportionating enzyme

Probab=93.90  E-value=0.11  Score=48.92  Aligned_cols=71  Identities=18%  Similarity=0.215  Sum_probs=53.7

Q ss_pred             ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC----CCCCCCccCCCCcCCCCCCHHHHH
Q psy8670          41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM----ADFGYDISDYLSFEPLFGDLKDFE  115 (224)
Q Consensus        41 ~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~----~~~gY~~~d~~~v~~~~G~~~~~~  115 (224)
                      +++.+++  +..  .+-++|+|-....++++.+++.|.+.++++|+.+...    .++.|++.+=+..||-|=+.+.+.
T Consensus        31 Gvll~l~--SLp--s~~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S~fa~NPlyI~le~L~  105 (538)
T PLN02635         31 GILLHPT--SLP--GPYGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQDANCGNTLLISLEELV  105 (538)
T ss_pred             EEEEccc--cCC--CCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcccccccccChhhcCHHhhh
Confidence            4444443  333  2356899988776666999999999999999998743    578899999889998887665543

>PRK12568 glycogen branching enzyme; Provisional

Probab=93.77  E-value=0.016  Score=56.42  Aligned_cols=48  Identities=25%  Similarity=0.535  Sum_probs=37.3

Q ss_pred             hhcccCCCcceeecccccCCC-CCCCCcchhhHH----------------------HHHHHhhcccCCCCC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYLR----------------------IKILLDFVPNHTSNQ  208 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~  208 (224)
                      ++.+++|++.+|++|++..+. ...+|+..+++.                      |+||||+|+||++..
T Consensus       277 ~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d  347 (730)
T PRK12568        277 PYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDD  347 (730)
T ss_pred             HHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcc
Confidence            556789999999999987653 236676665542                      689999999999875

>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase

Probab=93.69  E-value=0.55  Score=41.02  Aligned_cols=110  Identities=18%  Similarity=0.321  Sum_probs=65.2

Q ss_pred             CHHHHHHHHHHHHHHcC--CCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670          61 DLKGMIEKLPEHLHDLG--VGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHT  137 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG--~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~  137 (224)
                      +-+.+.+.+ +.+++.|  ++.|+|=--+...       -.+| ..|+ +|-+   .++|++++|++|+|+++=+-+ ++
T Consensus        28 s~~~v~~~~-~~~~~~~iP~d~i~iD~~w~~~-------~g~f-~~d~~~FPd---p~~mi~~l~~~G~k~~l~i~P-~i   94 (303)
T cd06592          28 NQETVLNYA-QEIIDNGFPNGQIEIDDNWETC-------YGDF-DFDPTKFPD---PKGMIDQLHDLGFRVTLWVHP-FI   94 (303)
T ss_pred             CHHHHHHHH-HHHHHcCCCCCeEEeCCCcccc-------CCcc-ccChhhCCC---HHHHHHHHHHCCCeEEEEECC-ee
Confidence            456677777 8888888  4566664323211       1233 5554 5664   789999999999999998887 56


Q ss_pred             CccchhHHhhhcCCCCccccccchhcc-cCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         138 SNQHEWFKKSLANIPPYKCASLLARLH-DLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       138 ~~~~~w~~~~~~~~~~~~~~f~w~~~~-~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      +.+++.|++..     ..++|+-+... ....+..|     .....-+++.||+.++
T Consensus        95 ~~~s~~~~e~~-----~~g~~vk~~~g~~~~~~~~w-----~g~~~~~Dftnp~a~~  141 (303)
T cd06592          95 NTDSENFREAV-----EKGYLVSEPSGDIPALTRWW-----NGTAAVLDFTNPEAVD  141 (303)
T ss_pred             CCCCHHHHhhh-----hCCeEEECCCCCCCccccee-----cCCcceEeCCCHHHHH
Confidence            77777776433     23555522110 01111111     1122346788888776

Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.

>PRK14706 glycogen branching enzyme; Provisional

Probab=93.60  E-value=0.017  Score=55.60  Aligned_cols=53  Identities=23%  Similarity=0.532  Sum_probs=41.5

Q ss_pred             hhcccCCCcceeecccccCCC-CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHH
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFK  213 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~  213 (224)
                      ++.+++|++.++++|+...+. ...||+..+|+.                      |+||||+|+||++..+.++.
T Consensus       175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~  250 (639)
T PRK14706        175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLA  250 (639)
T ss_pred             HHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhh
Confidence            456889999999999987642 246787777653                      58999999999998776653

>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3

Probab=93.44  E-value=0.27  Score=43.70  Aligned_cols=52  Identities=37%  Similarity=0.550  Sum_probs=36.0

Q ss_pred             HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670          71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH  136 (224)
Q Consensus        71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh  136 (224)
                      +.||+.|+|.|-|=- +..+..             .-+-+.+...++.++|+++||+|+||+=+.+
T Consensus        31 ~ilk~~G~N~vRlRv-wv~P~~-------------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD   82 (332)
T PF07745_consen   31 QILKDHGVNAVRLRV-WVNPYD-------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSD   82 (332)
T ss_dssp             HHHHHTT--EEEEEE--SS-TT-------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSS
T ss_pred             HHHHhcCCCeEEEEe-ccCCcc-------------cccCCHHHHHHHHHHHHHCCCeEEEeecccC
Confidence            888999999998743 222211             3456789999999999999999999994443

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....

>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3

Probab=93.38  E-value=0.13  Score=48.09  Aligned_cols=61  Identities=18%  Similarity=0.332  Sum_probs=35.6

Q ss_pred             CCCCCCCH-HHHHHHHHHHHHHcCCCeEEEcCcccCCCC-CCCCCccCCCCcCCCCCCHHHHHH
Q psy8670          55 NGDGVGDL-KGMIEKLPEHLHDLGVGAVWISPIFKSPMA-DFGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        55 ~~~~~g~l-~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~-~~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      .+-|+|+| .++..-+ +.+++.|++.+.|.|+++.... ++.|++.+=+.+||-|=+.+.+.+
T Consensus        10 ~~~GIGDfg~dl~~~~-d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~l~~l~e   72 (496)
T PF02446_consen   10 RSWGIGDFGDDLYQFI-DWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYIDLEALPE   72 (496)
T ss_dssp             S--SS--SSHHHHHHH-HHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-SHHHHH
T ss_pred             CCCceecHHHHHHHHH-HHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcCHHHhhh
Confidence            33478999 7777777 9999999999999999987543 348999999999999977655443

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.

>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3

Probab=93.23  E-value=0.68  Score=42.12  Aligned_cols=113  Identities=16%  Similarity=0.167  Sum_probs=68.0

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHTSN  139 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~  139 (224)
                      +-+.+.+.+ +.++++|++.+.|===+.....+.--..-|+ .+|+ +|.  +.++.|++.+|++||+.-+=+-+--++.
T Consensus        56 ~e~~i~~~a-~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-~~~~~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~  131 (394)
T PF02065_consen   56 TEEKILELA-DAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-EPDPKKFP--NGLKPLADYIHSLGMKFGLWFEPEMVSP  131 (394)
T ss_dssp             -HHHHHHHH-HHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-CBBTTTST--THHHHHHHHHHHTT-EEEEEEETTEEES
T ss_pred             CHHHHHHHH-HHHHHhCCEEEEEcCccccccCCCcccCCce-eEChhhhC--CcHHHHHHHHHHCCCeEEEEeccccccc
Confidence            345566666 9999999998755322211111111122344 4554 564  4699999999999999988887877888


Q ss_pred             cchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         140 QHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       140 ~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      ++..++       .++||.+-......         ..+..+--+++++|++++
T Consensus       132 ~S~l~~-------~hPdw~l~~~~~~~---------~~~r~~~vLD~~~pev~~  169 (394)
T PF02065_consen  132 DSDLYR-------EHPDWVLRDPGRPP---------TLGRNQYVLDLSNPEVRD  169 (394)
T ss_dssp             SSCHCC-------SSBGGBTCCTTSE----------ECBTTBEEB-TTSHHHHH
T ss_pred             hhHHHH-------hCccceeecCCCCC---------cCcccceEEcCCCHHHHH
Confidence            888887       88999863221110         011112237889999876

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....

>PRK09936 hypothetical protein; Provisional

Probab=93.12  E-value=1.2  Score=38.71  Aligned_cols=80  Identities=15%  Similarity=0.215  Sum_probs=53.5

Q ss_pred             CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCC-HHHHHHHH
Q psy8670          40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGD-LKDFETLK  118 (224)
Q Consensus        40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~-~~~~~~lv  118 (224)
                      ++++||-.-+.-       .-+-..+.+.+ ..++.+|+++|.+    +-.    +|.       |+.||+ ..-+.+.+
T Consensus        22 ~g~F~Qp~n~d~-------~~~~~qWq~~~-~~~~~~G~~tLiv----QWt----~yG-------~~~fg~~~g~La~~l   78 (296)
T PRK09936         22 KGIFYQPQNRDS-------QVTDTQWQGLW-SQLRLQGFDTLVV----QWT----RYG-------DADFGGQRGWLAKRL   78 (296)
T ss_pred             ccceeccccccC-------CCCHHHHHHHH-HHHHHcCCcEEEE----Eee----ecc-------CCCcccchHHHHHHH
Confidence            466777543321       23456677778 8899999999954    322    121       114455 45699999


Q ss_pred             HHHHHcCCEEEEecCCCCCCccchhHHhh
Q psy8670         119 ERLHALGIKILLDFVPNHTSNQHEWFKKS  147 (224)
Q Consensus       119 ~~~h~~gi~vilD~v~nh~~~~~~w~~~~  147 (224)
                      ++|++.||+|++=+..+     ..||+..
T Consensus        79 ~~A~~~Gl~v~vGL~~D-----p~y~q~~  102 (296)
T PRK09936         79 AAAQQAGLKLVVGLYAD-----PEFFMHQ  102 (296)
T ss_pred             HHHHHcCCEEEEcccCC-----hHHHHHH
Confidence            99999999999988764     4555544

>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional

Probab=93.09  E-value=0.2  Score=51.86  Aligned_cols=60  Identities=20%  Similarity=0.264  Sum_probs=50.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCC----CCCCccCCCCcCCCCCCHHHHH
Q psy8670          55 NGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD----FGYDISDYLSFEPLFGDLKDFE  115 (224)
Q Consensus        55 ~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~----~gY~~~d~~~v~~~~G~~~~~~  115 (224)
                      .+-++|+|.++.+-+ +.+++.|.+.+.|+|+.+....+    +.|++.+=+.+||-|=+.+.+.
T Consensus       738 ~~~GiGDf~dl~~~v-d~~a~~G~~~~qilPl~~~~~~~p~~~SPYsp~S~~alNplyI~~~~l~  801 (1221)
T PRK14510        738 RPWGIGDFEELYALV-DFLAEGGQSLWGVNPLHPLGLGDPERASPYQPSSRRAGNPLLISLDLLP  801 (1221)
T ss_pred             CCCCccCHHHHHHHH-HHHHHcCCCEEEECCCCCCCCCCCCCCCCccchhccccChhhcCHhhcc
Confidence            456789998877777 99999999999999999875545    8899999999999987765543

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=93.00  E-value=0.021  Score=57.92  Aligned_cols=19  Identities=37%  Similarity=0.663  Sum_probs=16.4

Q ss_pred             chhcccCCCcceeeccccc
Q psy8670         160 LARLHDLGVGAVWISPIFK  178 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~  178 (224)
                      +++++++|++.+|++|+|.
T Consensus       486 LdYLkeLGVT~I~LmPv~d  504 (1111)
T TIGR02102       486 LDYLQDLGVTHIQLLPVLS  504 (1111)
T ss_pred             HHHHHHcCCCEEEEcCccc
Confidence            4667899999999999985

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]

Probab=92.99  E-value=0.38  Score=42.02  Aligned_cols=61  Identities=31%  Similarity=0.483  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHcCCCeEEEcCcccCCC--CCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          64 GMIEKLPEHLHDLGVGAVWISPIFKSPM--ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        64 ~~~~~l~~~l~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      |..+.++.-||+.||+.|.|== +..+.  ...||.-.        .++.+..-++.++|+++||||++|+-
T Consensus        63 g~~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggG--------nnD~~k~ieiakRAk~~GmKVl~dFH  125 (403)
T COG3867          63 GVRQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGG--------NNDLKKAIEIAKRAKNLGMKVLLDFH  125 (403)
T ss_pred             ChHHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCC--------cchHHHHHHHHHHHHhcCcEEEeecc
Confidence            3444444889999999987742 22111  11222211        12345666778889999999999993

>PLN02950 4-alpha-glucanotransferase

Probab=92.53  E-value=0.39  Score=48.15  Aligned_cols=60  Identities=15%  Similarity=0.323  Sum_probs=48.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-----CCCCCCccCCCCcCCCCCCHHHHHHH
Q psy8670          57 DGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-----ADFGYDISDYLSFEPLFGDLKDFETL  117 (224)
Q Consensus        57 ~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-----~~~gY~~~d~~~v~~~~G~~~~~~~l  117 (224)
                      -|+|+|.++.+-+ +.+++.|.+.++|+|+.+...     .+..|++.+=+++||.|=+.+++.+.
T Consensus       277 ~GIGDf~dl~~~i-d~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~~l~~~  341 (909)
T PLN02950        277 VGVGEFLDLKLLV-DWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALSER  341 (909)
T ss_pred             CCeeCHHHHHHHH-HHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHHHHHhh
Confidence            4689998776666 999999999999999987652     12489999999999999887766433

>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3

Probab=92.46  E-value=0.17  Score=44.67  Aligned_cols=62  Identities=13%  Similarity=0.196  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670          63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP  134 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~  134 (224)
                      +-+.+.| ..+|++|+|+|..-=.+..-....  ...||       ....++.++++.|+++||.||+-.=+
T Consensus        24 ~~W~~~l-~k~ka~G~n~v~~yv~W~~he~~~--g~~df-------~g~~dl~~f~~~a~~~gl~vilrpGp   85 (319)
T PF01301_consen   24 EYWRDRL-QKMKAAGLNTVSTYVPWNLHEPEE--GQFDF-------TGNRDLDRFLDLAQENGLYVILRPGP   85 (319)
T ss_dssp             GGHHHHH-HHHHHTT-SEEEEE--HHHHSSBT--TB----------SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred             hHHHHHH-HHHHhCCcceEEEeccccccCCCC--Ccccc-------cchhhHHHHHHHHHHcCcEEEecccc
Confidence            4466777 888999999998753332211111  23444       23479999999999999999987644

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....

>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea

Probab=92.15  E-value=0.34  Score=43.51  Aligned_cols=59  Identities=17%  Similarity=0.288  Sum_probs=39.9

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPN  135 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~n  135 (224)
                      +++...+.+ ...+++||+.|+.+=..+-.      +..         ...+.|++|++.||++||+|++|+-+.
T Consensus        12 ~~~~~~~yi-~~a~~~Gf~~iFTSL~ipe~------~~~---------~~~~~~~~l~~~a~~~~~~v~~Disp~   70 (357)
T PF05913_consen   12 SFEENKAYI-EKAAKYGFKRIFTSLHIPED------DPE---------DYLERLKELLKLAKELGMEVIADISPK   70 (357)
T ss_dssp             -HHHHHHHH-HHHHCTTEEEEEEEE------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred             CHHHHHHHH-HHHHHCCCCEEECCCCcCCC------CHH---------HHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence            566677777 88889999999876221111      011         125899999999999999999999765

The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.

>PRK11052 malQ 4-alpha-glucanotransferase; Provisional

Probab=92.01  E-value=0.45  Score=46.36  Aligned_cols=64  Identities=20%  Similarity=0.322  Sum_probs=51.8

Q ss_pred             cCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccC----CCCCCCCCccCCCCcCCCCCCHHHHHHHH
Q psy8670          54 SNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS----PMADFGYDISDYLSFEPLFGDLKDFETLK  118 (224)
Q Consensus        54 ~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~----~~~~~gY~~~d~~~v~~~~G~~~~~~~lv  118 (224)
                      ..+-++|+|.++.+-+ +.+++.|.+.+.|+|+...    +..++.|++.+=+.+||-|=+.+.+.++.
T Consensus       156 ~~~~GIGDfgdl~~l~-d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~~  223 (695)
T PRK11052        156 EHNWGIGDFGDLKQML-EDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFQ  223 (695)
T ss_pred             CCCCCeecHHHHHHHH-HHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhhh
Confidence            3456789999955555 9999999999999999853    33568899999999999998887776654

>PLN03236 4-alpha-glucanotransferase; Provisional

Probab=91.87  E-value=0.47  Score=46.45  Aligned_cols=77  Identities=17%  Similarity=0.424  Sum_probs=57.3

Q ss_pred             ccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-C---C-CCCCccCCCCcCCCCCC
Q psy8670          36 EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-A---D-FGYDISDYLSFEPLFGD  110 (224)
Q Consensus        36 ~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~---~-~gY~~~d~~~v~~~~G~  110 (224)
                      .|-..+++-+++-  .....+-|+|+|-++.+-+ +.+++.|.+.+.|+|+.+... .   + +.|++.+=+.+||.|=+
T Consensus        58 ~~R~aGill~l~S--LrS~~s~GIGDfgdL~~fv-D~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyId  134 (745)
T PLN03236         58 AWKGSGMALPVFS--LRSAESVGAGDFGDLEALV-DFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLK  134 (745)
T ss_pred             chhhheeeecccc--CCCCCCCCcccHHHHHHHH-HHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcC
Confidence            4666677766652  2233445789999955555 999999999999999988642 2   2 58999999999999887


Q ss_pred             HHHHH
Q psy8670         111 LKDFE  115 (224)
Q Consensus       111 ~~~~~  115 (224)
                      .+.+.
T Consensus       135 le~L~  139 (745)
T PLN03236        135 LKELV  139 (745)
T ss_pred             HHHhh
Confidence            76664

>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex)

Probab=91.32  E-value=1  Score=39.85  Aligned_cols=74  Identities=9%  Similarity=0.167  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcC------------CCCCCHHHHHHHHHHHHHcCCEE
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFE------------PLFGDLKDFETLKERLHALGIKI  128 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~------------~~~G~~~~~~~lv~~~h~~gi~v  128 (224)
                      +.+.|...+ +.++..++|.+++=-.   ...++...+..|-.+-            ..+=|.+|+++|++-|+++||+|
T Consensus        16 ~~~~lk~~i-d~ma~~KlN~lhlHLt---D~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~v   91 (329)
T cd06568          16 TVAEVKRYI-DLLALYKLNVLHLHLT---DDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITV   91 (329)
T ss_pred             CHHHHHHHH-HHHHHhCCcEEEEEee---cCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence            556666667 8889989999887321   1111222222221211            11227899999999999999999


Q ss_pred             EEecC-CCCCC
Q psy8670         129 LLDFV-PNHTS  138 (224)
Q Consensus       129 ilD~v-~nh~~  138 (224)
                      |-.+- |.|+.
T Consensus        92 IPEiD~PGH~~  102 (329)
T cd06568          92 VPEIDMPGHTN  102 (329)
T ss_pred             EEecCCcHHHH
Confidence            97663 56654

SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.

>COG3589 Uncharacterized conserved protein [Function unknown]

Probab=91.15  E-value=0.64  Score=41.14  Aligned_cols=69  Identities=17%  Similarity=0.386  Sum_probs=45.8

Q ss_pred             eEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHH
Q psy8670          42 VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERL  121 (224)
Q Consensus        42 viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~  121 (224)
                      .-+.|||.+         .....-.+-+ +...+.||+.|..+=..+.+.. .              +-.+-|++|+++|
T Consensus         4 ~GfSifp~~---------~~~~~~~~Yi-~~~~~~Gf~~IFtsl~~~~~~~-~--------------~~~~~~~ell~~A   58 (360)
T COG3589           4 LGFSIFPNR---------SPKEKDIAYI-DRMHKYGFKRIFTSLLIPEEDA-E--------------LYFHRFKELLKEA   58 (360)
T ss_pred             eeEEeccCC---------CcchhHHHHH-HHHHHcCccceeeecccCCchH-H--------------HHHHHHHHHHHHH
Confidence            346677733         2233344555 7778899999876543322211 0              2235799999999


Q ss_pred             HHcCCEEEEecCCC
Q psy8670         122 HALGIKILLDFVPN  135 (224)
Q Consensus       122 h~~gi~vilD~v~n  135 (224)
                      ++.||+||+|+-+.
T Consensus        59 nklg~~vivDvnPs   72 (360)
T COG3589          59 NKLGLRVIVDVNPS   72 (360)
T ss_pred             HhcCcEEEEEcCHH
Confidence            99999999999765

>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3

Probab=90.76  E-value=0.64  Score=41.72  Aligned_cols=66  Identities=20%  Similarity=0.249  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEcCcccC--CCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCcc
Q psy8670          63 KGMIEKLPEHLHDLGVGAVWISPIFKS--PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQ  140 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~--~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~  140 (224)
                      +.+.+.+ +.++++|+|+|-|..+.=.  ... .  ...||          +.+.++++.|+++||+|+|-+.   +..-
T Consensus        10 e~~~~d~-~~m~~~G~n~vri~~~~W~~lEP~-e--G~ydF----------~~lD~~l~~a~~~Gi~viL~~~---~~~~   72 (374)
T PF02449_consen   10 EEWEEDL-RLMKEAGFNTVRIGEFSWSWLEPE-E--GQYDF----------SWLDRVLDLAAKHGIKVILGTP---TAAP   72 (374)
T ss_dssp             CHHHHHH-HHHHHHT-SEEEE-CCEHHHH-SB-T--TB-------------HHHHHHHHHHHCTT-EEEEEEC---TTTS
T ss_pred             HHHHHHH-HHHHHcCCCEEEEEEechhhccCC-C--Ceeec----------HHHHHHHHHHHhccCeEEEEec---cccc
Confidence            4466777 9999999999998775311  111 1  13344          5689999999999999999775   3445


Q ss_pred             chhHH
Q psy8670         141 HEWFK  145 (224)
Q Consensus       141 ~~w~~  145 (224)
                      ..|+.
T Consensus        73 P~Wl~   77 (374)
T PF02449_consen   73 PAWLY   77 (374)
T ss_dssp             -HHHH
T ss_pred             ccchh
Confidence            56776

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.

>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides

Probab=89.48  E-value=1.5  Score=39.12  Aligned_cols=75  Identities=12%  Similarity=0.223  Sum_probs=47.7

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCC-------CCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEP-------LFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-------~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      +.+.+...+ +.++..++|.+++=   -....++.+.+..|-.+..       .+=|.+|++++|+-|+++||+||-.+-
T Consensus        16 ~~~~ik~~I-d~ma~~KlN~lh~H---ltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID   91 (348)
T cd06562          16 SVDSIKRTI-DAMAYNKLNVLHWH---ITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEID   91 (348)
T ss_pred             CHHHHHHHH-HHHHHhCCcEEEEe---EEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEecc
Confidence            455566666 88888889988862   1111122222222222211       122799999999999999999998773


Q ss_pred             -CCCCCc
Q psy8670         134 -PNHTSN  139 (224)
Q Consensus       134 -~nh~~~  139 (224)
                       |.|+..
T Consensus        92 ~PGH~~a   98 (348)
T cd06562          92 TPGHTGS   98 (348)
T ss_pred             CchhhHH
Confidence             677754

The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in

>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin

Probab=89.02  E-value=1.9  Score=39.91  Aligned_cols=30  Identities=17%  Similarity=0.300  Sum_probs=25.7

Q ss_pred             CHHHHHHHHHHHHHcCCEEEEecC-CCCCCc
Q psy8670         110 DLKDFETLKERLHALGIKILLDFV-PNHTSN  139 (224)
Q Consensus       110 ~~~~~~~lv~~~h~~gi~vilD~v-~nh~~~  139 (224)
                      |.+|++++|+-|+++||+||-.+- |.|+..
T Consensus        95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a  125 (445)
T cd06569          95 SRADYIEILKYAKARHIEVIPEIDMPGHARA  125 (445)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEccCCchhHHH
Confidence            789999999999999999997663 677654

Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.

>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme

Probab=88.94  E-value=0.18  Score=46.14  Aligned_cols=65  Identities=23%  Similarity=0.434  Sum_probs=41.1

Q ss_pred             Cccccc-cchhcccCCCcceeecccccCCCCCCCCcchhhHH-----------------------------HHHHHhhcc
Q psy8670         153 PYKCAS-LLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR-----------------------------IKILLDFVP  202 (224)
Q Consensus       153 ~~~~~f-~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~-----------------------------i~ii~d~v~  202 (224)
                      ++.+|- .+...+..|+..++.+|+..-+.+.-=|+..|.++                             +-.|.|+|.
T Consensus        20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~   99 (423)
T PF14701_consen   20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVVL   99 (423)
T ss_pred             CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEee
Confidence            444542 12344567888888888754433333333333332                             347899999


Q ss_pred             cCCCCCcHHHHHhhc
Q psy8670         203 NHTSNQHEWFKKSLA  217 (224)
Q Consensus       203 nh~~~~~~W~~~~~~  217 (224)
                      |||+...+|+++..+
T Consensus       100 NHtA~nS~Wl~eHPE  114 (423)
T PF14701_consen  100 NHTANNSPWLREHPE  114 (423)
T ss_pred             ccCcCCChHHHhCcc
Confidence            999999999987654

>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins

Probab=88.50  E-value=2  Score=37.56  Aligned_cols=68  Identities=13%  Similarity=0.095  Sum_probs=45.5

Q ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEcC--cccCCCCCCCCCccCCCCcC--CCCCCHHHHHHHHHHHHHcCCEEEEecC-C
Q psy8670          60 GDLKGMIEKLPEHLHDLGVGAVWISP--IFKSPMADFGYDISDYLSFE--PLFGDLKDFETLKERLHALGIKILLDFV-P  134 (224)
Q Consensus        60 g~l~~~~~~l~~~l~~lG~~~i~l~P--i~~~~~~~~gY~~~d~~~v~--~~~G~~~~~~~lv~~~h~~gi~vilD~v-~  134 (224)
                      -+.+.+.+.+ +.++.+|+|.++|==  -|+.         .++-.+.  ...=|.+|++++++-|+++||+||--+- +
T Consensus        14 ~~~~~lk~~i-d~ma~~k~N~l~lhl~D~f~~---------~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~p   83 (301)
T cd06565          14 PKVSYLKKLL-RLLALLGANGLLLYYEDTFPY---------EGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTL   83 (301)
T ss_pred             CCHHHHHHHH-HHHHHcCCCEEEEEEecceec---------CCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCH
Confidence            3566677777 999999999998731  1111         1111121  2223789999999999999999986552 4


Q ss_pred             CCC
Q psy8670         135 NHT  137 (224)
Q Consensus       135 nh~  137 (224)
                      .|+
T Consensus        84 GH~   86 (301)
T cd06565          84 GHL   86 (301)
T ss_pred             HHH
Confidence            554

GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.

>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane

Probab=88.13  E-value=1.6  Score=38.30  Aligned_cols=76  Identities=18%  Similarity=0.237  Sum_probs=38.0

Q ss_pred             CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHH
Q psy8670          40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE  119 (224)
Q Consensus        40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~  119 (224)
                      ++|-||--+.+-..+..|...+-+.....+ ++||+||+|+|.+=-|-+..                      +=.+..+
T Consensus        30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi-~~l~~LgiNtIRVY~vdp~~----------------------nHd~CM~   86 (314)
T PF03198_consen   30 KGVAYQPGGSSEPSNYIDPLADPEACKRDI-PLLKELGINTIRVYSVDPSK----------------------NHDECMS   86 (314)
T ss_dssp             EEEE----------SS--GGG-HHHHHHHH-HHHHHHT-SEEEES---TTS------------------------HHHHH
T ss_pred             eeEEcccCCCCCCccCcCcccCHHHHHHhH-HHHHHcCCCEEEEEEeCCCC----------------------CHHHHHH
Confidence            455555444331122234455555566667 99999999999875554322                      1224566


Q ss_pred             HHHHcCCEEEEecCCCCCC
Q psy8670         120 RLHALGIKILLDFVPNHTS  138 (224)
Q Consensus       120 ~~h~~gi~vilD~v~nh~~  138 (224)
                      ++.+.||-||+|+-.-..+
T Consensus        87 ~~~~aGIYvi~Dl~~p~~s  105 (314)
T PF03198_consen   87 AFADAGIYVILDLNTPNGS  105 (314)
T ss_dssp             HHHHTT-EEEEES-BTTBS
T ss_pred             HHHhCCCEEEEecCCCCcc
Confidence            6777899999999765554

It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.

>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3

Probab=87.26  E-value=1  Score=39.65  Aligned_cols=75  Identities=11%  Similarity=0.225  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCC----------CCCHHHHHHHHHHHHHcCCEEEE
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPL----------FGDLKDFETLKERLHALGIKILL  130 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~----------~G~~~~~~~lv~~~h~~gi~vil  130 (224)
                      +.+.+.+.+ +.++..++|.++|=--   ...++.+....+-.+...          +=|.+|+++|++.|+++||+||-
T Consensus        16 ~~~~ik~~i-d~ma~~k~N~lhlhl~---D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIP   91 (351)
T PF00728_consen   16 SVDTIKRLI-DQMAYYKLNVLHLHLS---DDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIP   91 (351)
T ss_dssp             -HHHHHHHH-HHHHHTT-SEEEEEEE---SSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEE
T ss_pred             CHHHHHHHH-HHHHHcCCcEEEEEEe---cCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceee
Confidence            566677766 9999999999987321   001122222222111111          33689999999999999999997


Q ss_pred             ecC-CCCCCc
Q psy8670         131 DFV-PNHTSN  139 (224)
Q Consensus       131 D~v-~nh~~~  139 (224)
                      .+- |.|++.
T Consensus        92 eid~PGH~~~  101 (351)
T PF00728_consen   92 EIDTPGHAEA  101 (351)
T ss_dssp             EEEESSS-HH
T ss_pred             eccCchHHHH
Confidence            763 778764

2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....

>TIGR03849 arch_ComA phosphosulfolactate synthase

Probab=86.94  E-value=2.1  Score=36.16  Aligned_cols=51  Identities=24%  Similarity=0.221  Sum_probs=37.7

Q ss_pred             HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCC
Q psy8670          67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH  136 (224)
Q Consensus        67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh  136 (224)
                      ++.+++++++||++|.++-=+-.              +     +.++..++|+.++++|++|+-.+=...
T Consensus        74 ~~Yl~~~k~lGf~~IEiS~G~~~--------------i-----~~~~~~rlI~~~~~~g~~v~~EvG~K~  124 (237)
T TIGR03849        74 DEYLNECDELGFEAVEISDGSME--------------I-----SLEERCNLIERAKDNGFMVLSEVGKKS  124 (237)
T ss_pred             HHHHHHHHHcCCCEEEEcCCccC--------------C-----CHHHHHHHHHHHHhCCCeEeccccccC
Confidence            33337999999999988642211              1     247899999999999999998765544

This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.

>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3

Probab=86.55  E-value=1.5  Score=39.16  Aligned_cols=61  Identities=15%  Similarity=0.128  Sum_probs=36.8

Q ss_pred             HHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670          69 LPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL  130 (224)
Q Consensus        69 l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil  130 (224)
                      .++-+|++|+..+.|+--+..+-.-|.=..++|...+.. +..+=+++|+++|+++||++.+
T Consensus        96 W~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~-~krDiv~El~~A~rk~Glk~G~  156 (346)
T PF01120_consen   96 WAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSG-PKRDIVGELADACRKYGLKFGL  156 (346)
T ss_dssp             HHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGG-GTS-HHHHHHHHHHHTT-EEEE
T ss_pred             HHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCC-CCCCHHHHHHHHHHHcCCeEEE
Confidence            337789999999988865543221122233344444422 2357899999999999999988

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....

>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides

Probab=86.33  E-value=2.4  Score=37.00  Aligned_cols=75  Identities=11%  Similarity=0.211  Sum_probs=47.7

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcC-----------CCCCCHHHHHHHHHHHHHcCCEEE
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFE-----------PLFGDLKDFETLKERLHALGIKIL  129 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~-----------~~~G~~~~~~~lv~~~h~~gi~vi  129 (224)
                      +.+.+.+.+ +.++..++|.+++==-   ...++.+....|-.+-           ..+=|.+|++++++-|+++||+||
T Consensus        14 ~~~~lk~~i-d~ma~~K~N~lhlHl~---D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~vi   89 (303)
T cd02742          14 SVESIKRTI-DVLARYKINTFHWHLT---DDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVI   89 (303)
T ss_pred             CHHHHHHHH-HHHHHhCCcEEEEeee---cCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEE
Confidence            556666666 8889999999876311   1111222222222211           113368999999999999999999


Q ss_pred             EecC-CCCCCc
Q psy8670         130 LDFV-PNHTSN  139 (224)
Q Consensus       130 lD~v-~nh~~~  139 (224)
                      -.+- |.|+..
T Consensus        90 PEiD~PGH~~a  100 (303)
T cd02742          90 PEIDMPGHSTA  100 (303)
T ss_pred             EeccchHHHHH
Confidence            8773 677653

These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.

>PLN03059 beta-galactosidase; Provisional

Probab=86.00  E-value=1.8  Score=43.01  Aligned_cols=62  Identities=13%  Similarity=0.104  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          62 LKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        62 l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      -+-+.++| ..+|++|+|+|..==.+..-....  ...|       |.+..|+.++++.|++.||.||+=.=
T Consensus        58 p~~W~d~L-~k~Ka~GlNtV~tYV~Wn~HEp~~--G~~d-------F~G~~DL~~Fl~la~e~GLyvilRpG  119 (840)
T PLN03059         58 PEMWPDLI-QKAKDGGLDVIQTYVFWNGHEPSP--GNYY-------FEDRYDLVKFIKVVQAAGLYVHLRIG  119 (840)
T ss_pred             HHHHHHHH-HHHHHcCCCeEEEEecccccCCCC--Ceee-------ccchHHHHHHHHHHHHcCCEEEecCC
Confidence            35677788 888999999997633222110101  1223       35678999999999999999998543

>smart00812 Alpha_L_fucos Alpha-L-fucosidase

Probab=85.82  E-value=3  Score=37.79  Aligned_cols=59  Identities=12%  Similarity=0.129  Sum_probs=40.7

Q ss_pred             HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670          71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL  130 (224)
Q Consensus        71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil  130 (224)
                      +-+|+.|++.+.|+-=+..+-.-|.=..++|..++... ..+=+++|+++|+++||++-+
T Consensus        88 ~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~  146 (384)
T smart00812       88 DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL  146 (384)
T ss_pred             HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE
Confidence            77899999999887654332111111233554555433 468899999999999999987

O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.

>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D

Probab=85.08  E-value=2.7  Score=36.55  Aligned_cols=71  Identities=15%  Similarity=0.292  Sum_probs=38.3

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCC----CCCCCCc--------cCCCCcCCCCCCHHHHHHHHHHHHHcCCEE
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPM----ADFGYDI--------SDYLSFEPLFGDLKDFETLKERLHALGIKI  128 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~----~~~gY~~--------~d~~~v~~~~G~~~~~~~lv~~~h~~gi~v  128 (224)
                      +...+..-| +..++.|||.|.+.=+-+...    ...|+.+        .|+..+||.|  -+-+.+.|+.|.++||.+
T Consensus        28 ~~~e~~~yL-~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~  104 (289)
T PF13204_consen   28 TREEWEQYL-DTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEA  104 (289)
T ss_dssp             -HHHHHHHH-HHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EE
T ss_pred             CHHHHHHHH-HHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeE
Confidence            334555556 999999999999974433211    1123233        4666677665  367889999999999998


Q ss_pred             EEecCCCC
Q psy8670         129 LLDFVPNH  136 (224)
Q Consensus       129 ilD~v~nh  136 (224)
                      .  +|+=|
T Consensus       105 ~--lv~~w  110 (289)
T PF13204_consen  105 A--LVPFW  110 (289)
T ss_dssp             E--EESS-
T ss_pred             E--EEEEE
Confidence            4  55555

>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate

Probab=84.88  E-value=8.2  Score=33.91  Aligned_cols=78  Identities=13%  Similarity=0.298  Sum_probs=48.1

Q ss_pred             CHHHHHHHHHHHHHHc--CCCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670          61 DLKGMIEKLPEHLHDL--GVGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHT  137 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~l--G~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~  137 (224)
                      +-+.+.+.+ +.+++.  -+++|+|=--+-.   ..++  .+ ++.|+ +|-+   .++|++++|++|++|++-+.+ ++
T Consensus        22 ~~~ev~~~~-~~~~~~~iP~d~i~lD~~~~~---~~~~--~~-f~~d~~~FPd---p~~mi~~L~~~G~kv~~~i~P-~v   90 (319)
T cd06591          22 TQEELLDVA-KEYRKRGIPLDVIVQDWFYWP---KQGW--GE-WKFDPERFPD---PKAMVRELHEMNAELMISIWP-TF   90 (319)
T ss_pred             CHHHHHHHH-HHHHHhCCCccEEEEechhhc---CCCc--ee-EEEChhhCCC---HHHHHHHHHHCCCEEEEEecC-Cc
Confidence            445566666 777765  5677766421111   1111  23 35554 4654   568899999999999996654 46


Q ss_pred             CccchhHHhhhc
Q psy8670         138 SNQHEWFKKSLA  149 (224)
Q Consensus       138 ~~~~~w~~~~~~  149 (224)
                      +.+++-|++..+
T Consensus        91 ~~~~~~y~e~~~  102 (319)
T cd06591          91 GPETENYKEMDE  102 (319)
T ss_pred             CCCChhHHHHHH
Confidence            777777776654

XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.

>PRK10076 pyruvate formate lyase II activase; Provisional

Probab=84.55  E-value=6.6  Score=32.58  Aligned_cols=65  Identities=18%  Similarity=0.290  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCc--cCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670          63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDI--SDYLSFEPLFGDLKDFETLKERLHALGIKILL  130 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~--~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil  130 (224)
                      +.+.+-. +.++++|+..+.|+|.++.+..  .|.-  .+|.--+...-+.++++++.+.++++|+++.+
T Consensus       145 e~i~~ia-~~l~~l~~~~~~llpyh~~g~~--Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i  211 (213)
T PRK10076        145 ENMQQAL-DVLIPLGIKQIHLLPFHQYGEP--KYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV  211 (213)
T ss_pred             HHHHHHH-HHHHHcCCceEEEecCCccchh--HHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence            3344334 6777788888888887765321  1110  01111122224678999999999999999864

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=84.15  E-value=2.7  Score=31.30  Aligned_cols=41  Identities=32%  Similarity=0.544  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy8670          63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKIL  129 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vi  129 (224)
                      ..+.+-+ +.+.++|+..+|+.|=                         ++-+++++.|+++||+++
T Consensus        66 ~~~~~~v-~~~~~~g~~~v~~~~g-------------------------~~~~~~~~~a~~~gi~vi  106 (116)
T PF13380_consen   66 DKVPEIV-DEAAALGVKAVWLQPG-------------------------AESEELIEAAREAGIRVI  106 (116)
T ss_dssp             HHHHHHH-HHHHHHT-SEEEE-TT-------------------------S--HHHHHHHHHTT-EEE
T ss_pred             HHHHHHH-HHHHHcCCCEEEEEcc-------------------------hHHHHHHHHHHHcCCEEE
Confidence            3455555 9999999999999883                         344588899999999987

>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin

Probab=83.99  E-value=4  Score=36.52  Aligned_cols=29  Identities=14%  Similarity=0.304  Sum_probs=25.1

Q ss_pred             CHHHHHHHHHHHHHcCCEEEEecC-CCCCC
Q psy8670         110 DLKDFETLKERLHALGIKILLDFV-PNHTS  138 (224)
Q Consensus       110 ~~~~~~~lv~~~h~~gi~vilD~v-~nh~~  138 (224)
                      |.+|++++++-|+++||+||-.+- |.|+.
T Consensus        84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~  113 (357)
T cd06563          84 TQEEIREIVAYAAERGITVIPEIDMPGHAL  113 (357)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEecCCchhHH
Confidence            689999999999999999997763 66764

Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.

>PRK08208 coproporphyrinogen III oxidase; Validated

Probab=83.81  E-value=2.7  Score=38.52  Aligned_cols=72  Identities=25%  Similarity=0.260  Sum_probs=47.2

Q ss_pred             HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEE-EecCCCCCCccchhHH
Q psy8670          67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKIL-LDFVPNHTSNQHEWFK  145 (224)
Q Consensus        67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vi-lD~v~nh~~~~~~w~~  145 (224)
                      +.+ ..++++|++.|.+.-= ..       +......++... +.++..+.++.+++.|+.++ +|+.++..+..-.-+.
T Consensus       142 e~l-~~l~~~G~~rvslGvQ-S~-------~~~~L~~l~R~~-~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~  211 (430)
T PRK08208        142 EKL-ALLAARGVNRLSIGVQ-SF-------HDSELHALHRPQ-KRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWM  211 (430)
T ss_pred             HHH-HHHHHcCCCEEEEecc-cC-------CHHHHHHhCCCC-CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHH
Confidence            344 7778888888766531 11       111112233333 67899999999999999864 8999988777666555


Q ss_pred             hhh
Q psy8670         146 KSL  148 (224)
Q Consensus       146 ~~~  148 (224)
                      +.+
T Consensus       212 ~~l  214 (430)
T PRK08208        212 ESL  214 (430)
T ss_pred             HHH
Confidence            554

>PLN02849 beta-glucosidase

Probab=83.57  E-value=8.7  Score=36.16  Aligned_cols=75  Identities=16%  Similarity=0.291  Sum_probs=48.2

Q ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670          60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSN  139 (224)
Q Consensus        60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~  139 (224)
                      ..+....+.+ +-+|+||+++--++=-++.-.. .|-.     .+|+  ...+=.++||++++++||+-|+-+-  |- .
T Consensus        76 D~YhrY~eDI-~Lm~~lG~~aYRfSIsWsRI~P-~G~g-----~vN~--~gl~fY~~lid~l~~~GI~P~VTL~--H~-d  143 (503)
T PLN02849         76 DGYHKYKEDV-KLMVETGLDAFRFSISWSRLIP-NGRG-----SVNP--KGLQFYKNFIQELVKHGIEPHVTLF--HY-D  143 (503)
T ss_pred             cHHHhHHHHH-HHHHHcCCCeEEEeccHHhcCc-CCCC-----CCCH--HHHHHHHHHHHHHHHcCCeEEEeec--CC-C
Confidence            3467777888 9999999999988743332111 1110     1222  3345578999999999999998773  43 3


Q ss_pred             cchhHHh
Q psy8670         140 QHEWFKK  146 (224)
Q Consensus       140 ~~~w~~~  146 (224)
                      -..|+.+
T Consensus       144 lP~~L~~  150 (503)
T PLN02849        144 HPQYLED  150 (503)
T ss_pred             CcHHHHH
Confidence            3445543

>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase

Probab=83.28  E-value=3.9  Score=36.52  Aligned_cols=72  Identities=19%  Similarity=0.126  Sum_probs=49.4

Q ss_pred             HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEecCCCCCCccchhHH
Q psy8670          67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK-ILLDFVPNHTSNQHEWFK  145 (224)
Q Consensus        67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~-vilD~v~nh~~~~~~w~~  145 (224)
                      +.+ ..|+++|++.|.+..=  +.      +..-+..+ .+-.+.++..+.++.+++.|+. |-+|+.++..+..-.-+.
T Consensus       101 e~l-~~l~~~Gv~risiGvq--S~------~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~  170 (360)
T TIGR00539       101 EWC-KGLKGAGINRLSLGVQ--SF------RDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLK  170 (360)
T ss_pred             HHH-HHHHHcCCCEEEEecc--cC------ChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHH
Confidence            455 8889999998877642  11      11111233 3346789999999999999995 789999988776655454


Q ss_pred             hhh
Q psy8670         146 KSL  148 (224)
Q Consensus       146 ~~~  148 (224)
                      +.+
T Consensus       171 ~~l  173 (360)
T TIGR00539       171 EEL  173 (360)
T ss_pred             HHH
Confidence            443

Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.

>PRK05628 coproporphyrinogen III oxidase; Validated

Probab=83.24  E-value=3.2  Score=37.21  Aligned_cols=72  Identities=15%  Similarity=0.121  Sum_probs=46.7

Q ss_pred             HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEecCCCCCCccchhHH
Q psy8670          67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK-ILLDFVPNHTSNQHEWFK  145 (224)
Q Consensus        67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~-vilD~v~nh~~~~~~w~~  145 (224)
                      +.+ +.++++|++.|.+..=  +.      +..-...++ +-.+.++..+.++.+++.|+. |-+|++++..+....=+.
T Consensus       109 e~l-~~l~~~G~~rvslGvQ--S~------~~~~L~~l~-R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~  178 (375)
T PRK05628        109 EFF-AALRAAGFTRVSLGMQ--SA------APHVLAVLD-RTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWR  178 (375)
T ss_pred             HHH-HHHHHcCCCEEEEecc--cC------CHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHH
Confidence            344 7778888888776541  11      111111222 235678899999999999998 999999987776555444


Q ss_pred             hhh
Q psy8670         146 KSL  148 (224)
Q Consensus       146 ~~~  148 (224)
                      +.+
T Consensus       179 ~tl  181 (375)
T PRK05628        179 ASL  181 (375)
T ss_pred             HHH
Confidence            443

>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3

Probab=82.52  E-value=6.1  Score=34.17  Aligned_cols=65  Identities=15%  Similarity=0.168  Sum_probs=39.9

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCC-CCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG-YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~g-Y~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      ..+.+....-+ |..+++|+..+.+    ..+-..++ =...|+....+.    .++++||+-|+++|++|+|=.
T Consensus        28 g~~t~~~k~yI-DfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw~   93 (273)
T PF10566_consen   28 GATTETQKRYI-DFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLWY   93 (273)
T ss_dssp             SSSHHHHHHHH-HHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-TT------HHHHHHHHHHTT-EEEEEE
T ss_pred             CCCHHHHHHHH-HHHHHcCCCEEEe----ccccccccccccccccccCCc----cCHHHHHHHHHHcCCCEEEEE
Confidence            45777777777 9999999999988    22211111 134455555554    689999999999999987644

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.

>PRK10426 alpha-glucosidase; Provisional

Probab=82.22  E-value=16  Score=35.37  Aligned_cols=80  Identities=16%  Similarity=0.402  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcC--CCeEEEcCcccCC-CCCCCCCcc-CCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670          63 KGMIEKLPEHLHDLG--VGAVWISPIFKSP-MADFGYDIS-DYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHT  137 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG--~~~i~l~Pi~~~~-~~~~gY~~~-d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~  137 (224)
                      +.+.+.+ +.+++.|  +++|||- -+... ..++|.... +| +.|+ +|-   +.++|++++|++|+|+++=+-+ ++
T Consensus       221 ~~v~~v~-~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~-~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~P-~v  293 (635)
T PRK10426        221 EVVQKKL-DTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNW-KWDSERYP---QLDSRIKQLNEEGIQFLGYINP-YL  293 (635)
T ss_pred             HHHHHHH-HHHHHcCCCeeEEEEe-cccccccccccccccccc-eEChhhCC---CHHHHHHHHHHCCCEEEEEEcC-cc
Confidence            4566666 7788876  6888884 22110 011222111 22 4443 354   4678999999999999988766 45


Q ss_pred             CccchhHHhhhc
Q psy8670         138 SNQHEWFKKSLA  149 (224)
Q Consensus       138 ~~~~~w~~~~~~  149 (224)
                      ..+++-+++..+
T Consensus       294 ~~~~~~y~e~~~  305 (635)
T PRK10426        294 ASDGDLCEEAAE  305 (635)
T ss_pred             CCCCHHHHHHHH
Confidence            567777876553

>PRK07094 biotin synthase; Provisional

Probab=82.20  E-value=2.9  Score=36.57  Aligned_cols=45  Identities=13%  Similarity=0.151  Sum_probs=34.7

Q ss_pred             CcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhh
Q psy8670         103 SFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSL  148 (224)
Q Consensus       103 ~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~  148 (224)
                      .+.+ -.+.++..+.++.+++.|+.+-.++++.+.+...+-+.+.+
T Consensus       157 ~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l  201 (323)
T PRK07094        157 KLHP-GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDI  201 (323)
T ss_pred             HhCC-CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHH
Confidence            3444 26789999999999999999999999998666655554433

>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]

Probab=81.60  E-value=3.8  Score=37.34  Aligned_cols=58  Identities=24%  Similarity=0.300  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCC---HHHHHHHHHHHHHcCCEEEEec
Q psy8670          66 IEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGD---LKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~---~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      .+-+ .++|+.|+++|.++=-+..-..      .  ...+|.+-.   ..-+.+.|+.|.+.||+|++|+
T Consensus        76 ~~~~-~~ik~~G~n~VRiPi~~~~~~~------~--~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~  136 (407)
T COG2730          76 EEDF-DQIKSAGFNAVRIPIGYWALQA------T--DGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDL  136 (407)
T ss_pred             hhHH-HHHHHcCCcEEEcccchhhhhc------c--CCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEe
Confidence            3345 9999999999987533222100      0  014555532   2356777999999999999997

>TIGR03356 BGL beta-galactosidase

Probab=81.58  E-value=4  Score=37.51  Aligned_cols=65  Identities=18%  Similarity=0.249  Sum_probs=44.7

Q ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      ..+....+.+ +.++++|++++-++=-++.-.. .|..     .+|  -...+-..+++++|+++||++|+++.
T Consensus        51 d~y~~y~eDi-~l~~~~G~~~~R~si~Wsri~p-~g~~-----~~n--~~~~~~y~~~i~~l~~~gi~pivtL~  115 (427)
T TIGR03356        51 DHYHRYEEDV-ALMKELGVDAYRFSIAWPRIFP-EGTG-----PVN--PKGLDFYDRLVDELLEAGIEPFVTLY  115 (427)
T ss_pred             cHHHhHHHHH-HHHHHcCCCeEEcccchhhccc-CCCC-----CcC--HHHHHHHHHHHHHHHHcCCeeEEeec
Confidence            3467777888 9999999999987643322111 1100     111  12356788999999999999999984

>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37

Probab=81.41  E-value=5.8  Score=34.83  Aligned_cols=78  Identities=15%  Similarity=0.271  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHcCC--CeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670          63 KGMIEKLPEHLHDLGV--GAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHTSN  139 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG~--~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~  139 (224)
                      +.+.+-+ +.+++.||  ++|+|-+=+...   .+..-.+ +..|+ +|-   +.++|++++|++|+++++-+.+ +++.
T Consensus        29 ~~v~~~~-~~~r~~~iP~d~i~ld~~~~~~---~~~~~~~-f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P-~i~~   99 (317)
T cd06599          29 EALLEFI-DKCREHDIPCDSFHLSSGYTSI---EGGKRYV-FNWNKDRFP---DPAAFVAKFHERGIRLAPNIKP-GLLQ   99 (317)
T ss_pred             HHHHHHH-HHHHHcCCCeeEEEEecccccc---CCCceee-eecCcccCC---CHHHHHHHHHHCCCEEEEEeCC-cccC
Confidence            4455555 77787665  778775422211   0100112 34453 465   5679999999999999996665 4556


Q ss_pred             cchhHHhhhc
Q psy8670         140 QHEWFKKSLA  149 (224)
Q Consensus       140 ~~~w~~~~~~  149 (224)
                      +++.|++..+
T Consensus       100 ~~~~y~e~~~  109 (317)
T cd06599         100 DHPRYKELKE  109 (317)
T ss_pred             CCHHHHHHHH
Confidence            6677776654

The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.

>PRK01060 endonuclease IV; Provisional

Probab=81.01  E-value=8  Score=32.81  Aligned_cols=65  Identities=17%  Similarity=0.140  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCE---EEEecC--CCCC
Q psy8670          63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK---ILLDFV--PNHT  137 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~---vilD~v--~nh~  137 (224)
                      .++.+.+ +.++++|+++|.|.+--+     ..+        .+..-+.++++++.+.+.++|++   +.+-..  +|-+
T Consensus        12 ~~~~~~l-~~~~~~G~d~vEl~~~~p-----~~~--------~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~   77 (281)
T PRK01060         12 GGLEGAV-AEAAEIGANAFMIFTGNP-----QQW--------KRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINLG   77 (281)
T ss_pred             CCHHHHH-HHHHHcCCCEEEEECCCC-----CCC--------cCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCC
Confidence            3366677 999999999999965311     111        11123678899999999999998   444333  3555


Q ss_pred             Cccc
Q psy8670         138 SNQH  141 (224)
Q Consensus       138 ~~~~  141 (224)
                      +.+.
T Consensus        78 ~~d~   81 (281)
T PRK01060         78 NPNK   81 (281)
T ss_pred             CCCH
Confidence            5444

>PLN02877 alpha-amylase/limit dextrinase

Probab=80.69  E-value=0.37  Score=48.45  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=18.2

Q ss_pred             HHHHHhhcccCCCCCcHHHHH
Q psy8670         194 IKILLDFVPNHTSNQHEWFKK  214 (224)
Q Consensus       194 i~ii~d~v~nh~~~~~~W~~~  214 (224)
                      |+||||.|+||++..++|...
T Consensus       480 I~VImDVVyNHt~~~g~~~~~  500 (970)
T PLN02877        480 LRVVLDVVYNHLHSSGPFDEN  500 (970)
T ss_pred             CEEEEEECCccccCCCCcchh
Confidence            589999999999998888743

>TIGR00217 malQ 4-alpha-glucanotransferase

Probab=80.56  E-value=2.7  Score=39.60  Aligned_cols=57  Identities=21%  Similarity=0.255  Sum_probs=46.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCC-CCCccCCCCcCCCCCCHHH
Q psy8670          57 DGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF-GYDISDYLSFEPLFGDLKD  113 (224)
Q Consensus        57 ~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~-gY~~~d~~~v~~~~G~~~~  113 (224)
                      -++|||-.....+++.+++.|....+|.|+++...... .|++.+=+..||-|=+.+.
T Consensus        29 ~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~~~~~ssPYs~~S~~a~NplyI~le~   86 (513)
T TIGR00217        29 WGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPADFTRSPPYSISSARALNVYYIDLEA   86 (513)
T ss_pred             CCccChHHHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCCCcCchhcccccHHhcChhh
Confidence            56899999998877999999999999999998754444 4999998898887765543

This enzyme is known as amylomaltase and disproportionating enzyme.

>PRK08207 coproporphyrinogen III oxidase; Provisional

Probab=80.48  E-value=4.7  Score=37.78  Aligned_cols=72  Identities=22%  Similarity=0.270  Sum_probs=49.0

Q ss_pred             HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCC-EEEEecCCCCCCccchhHH
Q psy8670          67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGI-KILLDFVPNHTSNQHEWFK  145 (224)
Q Consensus        67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi-~vilD~v~nh~~~~~~w~~  145 (224)
                      +++ ..|++.|++.|.+.|=  +.      +..-+..+.. -.+.+++.+.++.+++.|+ .|-+|+.++-.+..-.=+.
T Consensus       270 e~L-~~Lk~~Gv~RISIGvQ--S~------~d~vLk~igR-~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~  339 (488)
T PRK08207        270 EKL-EVLKKYGVDRISINPQ--TM------NDETLKAIGR-HHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVK  339 (488)
T ss_pred             HHH-HHHHhcCCCeEEEcCC--cC------CHHHHHHhCC-CCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHH
Confidence            345 8889999998887762  11      1111123332 3678999999999999999 7889999887665554444


Q ss_pred             hhh
Q psy8670         146 KSL  148 (224)
Q Consensus       146 ~~~  148 (224)
                      +.+
T Consensus       340 ~tl  342 (488)
T PRK08207        340 HTL  342 (488)
T ss_pred             HHH
Confidence            443

>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin

Probab=80.32  E-value=9.7  Score=33.49  Aligned_cols=74  Identities=12%  Similarity=0.245  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcC-----CCCCCHHHHHHHHHHHHHcCCEEEEecC-C
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFE-----PLFGDLKDFETLKERLHALGIKILLDFV-P  134 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~-----~~~G~~~~~~~lv~~~h~~gi~vilD~v-~  134 (224)
                      +.+.+...+ +.++..++|.+++==   ....++.+.+..|-.+-     ..+=|.+|++++++-|+++||+||-.+- |
T Consensus        16 ~~~~ik~~I-d~ma~~KlN~lh~Hl---tDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~P   91 (311)
T cd06570          16 PVAVIKRQL-DAMASVKLNVFHWHL---TDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVP   91 (311)
T ss_pred             CHHHHHHHH-HHHHHhCCeEEEEEE---ecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCc
Confidence            456666666 999999999777631   00011222222221211     1123789999999999999999997663 6


Q ss_pred             CCCC
Q psy8670         135 NHTS  138 (224)
Q Consensus       135 nh~~  138 (224)
                      .|+.
T Consensus        92 GH~~   95 (311)
T cd06570          92 GHAS   95 (311)
T ss_pred             cchH
Confidence            7876

Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.

>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins

Probab=80.19  E-value=8.3  Score=33.95  Aligned_cols=78  Identities=10%  Similarity=0.241  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEE--cC---c----ccCCCCCCCCCc------cCCCC--cCCCCCCHHHHHHHHHHHHH
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWI--SP---I----FKSPMADFGYDI------SDYLS--FEPLFGDLKDFETLKERLHA  123 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l--~P---i----~~~~~~~~gY~~------~d~~~--v~~~~G~~~~~~~lv~~~h~  123 (224)
                      +.+.+.+.+ +.++..++|.+++  +-   +    ++.......|..      ..+..  -...+=|.+|++++++-|++
T Consensus        15 ~~~~ik~~i-d~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~   93 (326)
T cd06564          15 SMDFLKDII-KTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKD   93 (326)
T ss_pred             CHHHHHHHH-HHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHH
Confidence            456666666 9999999999987  11   1    000000000000      00000  11222378999999999999


Q ss_pred             cCCEEEEecC-CCCCCc
Q psy8670         124 LGIKILLDFV-PNHTSN  139 (224)
Q Consensus       124 ~gi~vilD~v-~nh~~~  139 (224)
                      +||+||-.+- |.|+..
T Consensus        94 rgI~vIPEID~PGH~~a  110 (326)
T cd06564          94 RGVNIIPEIDSPGHSLA  110 (326)
T ss_pred             cCCeEeccCCCcHHHHH
Confidence            9999997663 667643

Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
4gin_A	584	Crystal Structure Of The Mutb R284c Mutant From Cry		3e-32
4gin_A	584	Crystal Structure Of The Mutb R284c Mutant From Cry		2e-09
2pwf_A	556	Crystal Structure Of The Mutb D200a Mutant In Compl		4e-32
2pwf_A	556	Crystal Structure Of The Mutb D200a Mutant In Compl		2e-09
2pwe_A	556	Crystal Structure Of The Mutb E254q Mutant In Compl		4e-32
2pwe_A	556	Crystal Structure Of The Mutb E254q Mutant In Compl		2e-09
1zja_A	557	Crystal Structure Of The Trehalulose Synthase Mutb		4e-32
1zja_A	557	Crystal Structure Of The Trehalulose Synthase Mutb		2e-09
4h2c_A	557	Trehalulose Synthase Mutb R284c Mutant Length = 557		4e-32
4h2c_A	557	Trehalulose Synthase Mutb R284c Mutant Length = 557		2e-09
4gi6_A	557	Crystal Structure Of The Mutb F164l Mutant In Compl		4e-32
4gi6_A	557	Crystal Structure Of The Mutb F164l Mutant In Compl		2e-09
2pwg_A	556	Crystal Structure Of The Trehalulose Synthase Mutb		4e-32
2pwg_A	556	Crystal Structure Of The Trehalulose Synthase Mutb		2e-09
2ze0_A	555	Alpha-glucosidase Gsj Length = 555		3e-31
2ze0_A	555	Alpha-glucosidase Gsj Length = 555		3e-09
1uok_A	558	Crystal Structure Of B. Cereus Oligo-1,6-Glucosidas		4e-30
1uok_A	558	Crystal Structure Of B. Cereus Oligo-1,6-Glucosidas		1e-09
4aie_A	549	Structure Of Glucan-1,6-Alpha-Glucosidase From Lact		4e-30
4aie_A	549	Structure Of Glucan-1,6-Alpha-Glucosidase From Lact		5e-10
3gbd_A	558	Crystal Structure Of The Isomaltulose Synthase Smua		1e-29
3gbd_A	558	Crystal Structure Of The Isomaltulose Synthase Smua		3e-08
1m53_A	570	Crystal Structure Of Isomaltulose Synthase (Pali) F		2e-29
1m53_A	570	Crystal Structure Of Isomaltulose Synthase (Pali) F		9e-08
3a47_A	589	Crystal Structure Of Isomaltase From Saccharomyces		3e-29
3a47_A	589	Crystal Structure Of Isomaltase From Saccharomyces		2e-09
3axh_A	589	Crystal Structure Of Isomaltase In Complex With Iso		3e-29
3axh_A	589	Crystal Structure Of Isomaltase In Complex With Iso		2e-09
2zic_A	543	Crystal Structure Of Streptococcus Mutans Dextran G		5e-29
2zic_A	543	Crystal Structure Of Streptococcus Mutans Dextran G		3e-09
2zid_A	543	Crystal Structure Of Dextran Glucosidase E236q Comp		5e-29
2zid_A	543	Crystal Structure Of Dextran Glucosidase E236q Comp		3e-09
1wza_A	488	Crystal Structure Of Alpha-Amylase From H.Orenii Le		1e-25
1wza_A	488	Crystal Structure Of Alpha-Amylase From H.Orenii Le		3e-06
3k8l_A	669	Crystal Structure Of Susg-D498n Mutant With Maltohe		3e-21
3k8l_A	669	Crystal Structure Of Susg-D498n Mutant With Maltohe		2e-05
3k8k_A	669	Crystal Structure Of Susg Length = 669		3e-21
3k8k_A	669	Crystal Structure Of Susg Length = 669		3e-05
1lwh_A	441	Crystal Structure Of T. Maritima 4-Alpha-Glucanotra		3e-19
1g1y_A	585	Crystal Structure Of Alpha-Amylase Ii (Tvaii) From		7e-17
1wzk_A	585	Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (T		7e-17
1wzl_A	585	Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (T		7e-17
1jl8_A	585	Complex Of Alpha-Amylase Ii (Tva Ii) From Thermoact		7e-17
1bvz_A	585	Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vul		7e-17
1wzm_A	585	Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (t		7e-17
1vfm_A	585	Crystal Structure Of Thermoactinomyces Vulgaris R-4		7e-17
1jf5_A	585	Crystal Structure Of Thermoactinomyces Vulgaris R-4		7e-17
1jf6_A	585	Crystal Structure Of Thermoactinomyces Vulgaris R-4		8e-17
1jgi_A	628	Crystal Structure Of The Active Site Mutant Glu328g		6e-15
1jgi_A	628	Crystal Structure Of The Active Site Mutant Glu328g		3e-04
1mvy_A	628	Amylosucrase Mutant E328q Co-Crystallized With Malt		7e-15
1mvy_A	628	Amylosucrase Mutant E328q Co-Crystallized With Malt		3e-04
1gvi_A	588	Thermus Maltogenic Amylase In Complex With Beta-Cd		2e-14
1sma_A	588	Crystal Structure Of A Maltogenic Amylase Length =		2e-14
4fls_A	628	Crystal Structure Of Amylosucrase Inactive Double M		2e-14
4flo_A	628	Crystal Structure Of Amylosucrase Double Mutant A28		2e-14
1g5a_A	628	Amylosucrase From Neisseria Polysaccharea Length =		2e-14
4flr_A	628	Crystal Structure Of Amylosucrase Double Mutant A28		2e-14
3ueq_A	632	Crystal Structure Of Amylosucrase From Neisseria Po		2e-14
4flq_A	628	Crystal Structure Of Amylosucrase Double Mutant A28		2e-14
1j0j_A	588	Crystal Structure Of Neopullulanase E357q Complex W		6e-14
1j0h_A	588	Crystal Structure Of Bacillus Stearothermophilus Ne		6e-14
1ea9_C	583	Cyclomaltodextrinase Length = 583		2e-13
4aee_A	696	Crystal Structure Of Maltogenic Amylase From S.Mari		9e-13
1cyg_A	680	Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgt		4e-12
3ucq_A	655	Crystal Structure Of Amylosucrase From Deinococcus		1e-11
6cgt_A	684	Hoxa Complex Of Cyclodextrin Glycosyltransferase Mu		3e-11
1cgu_A	684	Catalytic Center Of Cyclodextrin Glycosyltransferas		3e-11
1cgt_A	684	Structure Of Cyclodextrin Glycosyltransferase Refin		3e-11
8cgt_A	684	Structure Of Cyclodextrin Glycosyltransferase Compl		3e-11
4cgt_A	678	Deletion Mutant Delta(145-150), F151d Of Cyclodextr		4e-11
2wpg_A	637	Sucrose Hydrolase Length = 637		6e-11
1izk_A	637	Thermoactinomyces Vulgaris R-47 Alpha-amylase 1 Mut		7e-11
1uh2_A	637	Thermoactinomyces Vulgaris R-47 Alpha-AmylaseMALTO-		7e-11
2d0f_A	637	Crystal Structure Of Thermoactinomyces Vulgaris R-4		7e-11
1izj_A	637	Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1 Mut		7e-11
1ji1_A	637	Crystal Structure Analysis Of Thermoactinomyces Vul		7e-11
3czk_A	644	Crystal Structure Analysis Of Sucrose Hydrolase(Suh		8e-11
3cze_A	644	Crystal Structure Analysis Of Sucrose Hydrolase (Su		8e-11
1qho_A	686	Five-Domain Alpha-Amylase From Bacillus Stearotherm		1e-10
2wc7_A	488	Crystal Structure Of Nostoc Punctiforme Debranching		1e-10
3dhu_A	449	Crystal Structure Of An Alpha-Amylase From Lactobac		3e-10
4aef_A	645	The Crystal Structure Of Thermostable Amylase From		6e-10
1a47_A	683	Cgtase From Thermoanaerobacterium Thermosulfurigene		1e-09
1tcm_A	686	Cyclodextrin Glycosyltransferase W616a Mutant From		1e-09
1uks_A	686	Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN		1e-09
1d7f_A	686	Crystal Structure Of Asparagine 233-Replaced Cyclod		1e-09
1cxk_A	686	Complex Between A Maltononaose Substrate And Bacill		1e-09
1cgw_A	686	Site Directed Mutations Of The Active Site Residue		1e-09
1v3k_A	686	Crystal Structure Of F283y Mutant Cyclodextrin Glyc		1e-09
1v3j_A	686	Crystal Structure Of F283l Mutant Cyclodextrin Glyc		2e-09
1eo5_A	686	Bacillus Circulans Strain 251 Cyclodextrin Glycosyl		2e-09
1kck_A	686	Bacillus Circulans Strain 251 Cyclodextrin Glycosyl		2e-09
1cgx_A	686	Site Directed Mutations Of The Active Site Residue		2e-09
1pam_A	686	Cyclodextrin Glucanotransferase Length = 686		2e-09
1cdg_A	686	Nucleotide Sequence And X-Ray Structure Of Cyclodex		2e-09
1kcl_A	686	Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl		2e-09
1cgv_A	686	Site Directed Mutations Of The Active Site Residue		2e-09
1cxl_A	686	Complex Between A Covalent Intermediate And Bacillu		2e-09
1cgy_A	686	Site Directed Mutations Of The Active Site Residue		2e-09
1pez_A	686	Bacillus Circulans Strain 251 Mutant A230v Length =		2e-09
1dtu_A	686	Bacillus Circulans Strain 251 Cyclodextrin Glycosyl		2e-09
1pj9_A	686	Bacillus Circulans Strain 251 Loop Mutant 183-195 L		2e-09
2z1k_A	475	Crystal Structure Of Ttha1563 From Thermus Thermoph		3e-09
3bmv_A	683	Cyclodextrin Glycosyl Transferase From Thermoanerob		3e-09
1ot2_A	686	Bacillus Circulans Strain 251 Cyclodextrin Glycosyl		6e-09
1ukt_A	686	Crystal Structure Of Y100l Mutant Cyclodextrin Gluc		7e-09
1ot1_A	686	Bacillus Circulans Strain 251 Cyclodextrin Glycosyl		1e-08
2dh3_A	424	Crystal Structure Of Human Ed-4f2hc Length = 424		2e-08
2dh2_A	424	Crystal Structure Of Human Ed-4f2hc Length = 424		3e-08
1iv8_A	720	Crystal Structure Of Maltooligosyl Trehalose Syntha		8e-07
2taa_A	478	Structure And Possible Catalytic Residues Of Taka-A		5e-06
4gkl_A	422	Crystal Structure Of A Noncanonic Maltogenic Alpha-		8e-06
2guy_A	478	Orthorhombic Crystal Structure (Space Group P21212)		1e-05
3vgg_A	558	Crystal Structure Of Glycosyltrehalose Trehalohydro		1e-05
3vge_A	558	Crystal Structure Of Glycosyltrehalose Trehalohydro		1e-05
3vgd_A	558	Ctystal Structure Of Glycosyltrehalose Trehalohydro		2e-05
1eha_A	558	Crystal Structure Of Glycosyltrehalose Trehalohydro		2e-05
1eh9_A	558	Crystal Structure Of Sulfolobus Solfataricus Glycos		2e-05
3hje_A	704	Crystal Structure Of Sulfolobus Tokodaii Hypothetic		3e-05
3k1d_A	722	Crystal Structure Of Glycogen Branching Enzyme Syno		5e-05
2aaa_A	484	Calcium Binding In Alpha-Amylases: An X-Ray Diffrac		2e-04
3qgv_A	435	Crystal Structure Of A Thermostable Amylase Variant		3e-04
2bhy_A	602	Crystal Structure Of Deinococcus Radiodurans Maltoo		3e-04
3m07_A	618	1.4 Angstrom Resolution Crystal Structure Of Putati		3e-04
3ede_A	601	Structural Base For Cyclodextrin Hydrolysis Length		3e-04
3edf_A	601	Structural Base For Cyclodextrin Hydrolysis Length		3e-04
3edd_A	601	Structural Base For Cyclodextrin Hydrolysis Length		3e-04
1mwo_A	435	Crystal Structure Analysis Of The Hyperthermostable		5e-04
2bhu_A	602	Crystal Structure Of Deinococcus Radiodurans Maltoo		5e-04
3aml_A	755	Structure Of The Starch Branching Enzyme I (Bei) Fr		6e-04
3amk_A	702	Structure Of The Starch Branching Enzyme I (Bei) Fr		7e-04
1h3g_A	601	Cyclomaltodextrinase From Flavobacterium Sp. No. 92		9e-04

>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals Soaked With The Inhibitor Deoxynojirimycin Length = 584

Iteration: 1
 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           WW+++VFY +YPRSFKD+NGDG+GD KG+ EKL ++L  LG+ A+WI+P + SP  D GY
Sbjct: 33  WWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKL-DYLKGLGIDAIWINPHYASPNTDNGY 91
Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PYK 155
           DISDY      +G ++DF+ L   L   G+++++D V NH+S+QHEWFK S A+   PY+
Sbjct: 92  DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 151

>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals Soaked With The Inhibitor Deoxynojirimycin Length = 584

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 22/78 (28%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
           L  LG+ A+WI+P + SP  D GYDISDY  +                      ++++D 
Sbjct: 68  LKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDV 127
Query: 201 VPNHTSNQHEWFKKSLAN 218
           V NH+S+QHEWFK S A+
Sbjct: 128 VINHSSDQHEWFKSSRAS 145

>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With Glucose Length = 556

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           WW+++VFY +YPRSFKD+NGDG+GD KG+ EKL ++L  LG+ A+WI+P + SP  D GY
Sbjct: 5   WWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKL-DYLKGLGIDAIWINPHYASPNTDNGY 63
Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PYK 155
           DISDY      +G ++DF+ L   L   G+++++D V NH+S+QHEWFK S A+   PY+
Sbjct: 64  DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 123

>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With Glucose Length = 556

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 22/81 (27%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KIL 197
           L  L  LG+ A+WI+P + SP  D GYDISDY  +                      +++
Sbjct: 37  LDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLM 96
Query: 198 LDFVPNHTSNQHEWFKKSLAN 218
           +D V NH+S+QHEWFK S A+
Sbjct: 97  VDVVINHSSDQHEWFKSSRAS 117

>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With The Substrate Sucrose Length = 556

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           WW+++VFY +YPRSFKD+NGDG+GD KG+ EKL ++L  LG+ A+WI+P + SP  D GY
Sbjct: 5   WWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKL-DYLKGLGIDAIWINPHYASPNTDNGY 63
Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PYK 155
           DISDY      +G ++DF+ L   L   G+++++D V NH+S+QHEWFK S A+   PY+
Sbjct: 64  DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 123

>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With The Substrate Sucrose Length = 556

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 22/81 (27%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KIL 197
           L  L  LG+ A+WI+P + SP  D GYDISDY  +                      +++
Sbjct: 37  LDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLM 96
Query: 198 LDFVPNHTSNQHEWFKKSLAN 218
           +D V NH+S+QHEWFK S A+
Sbjct: 97  VDVVINHSSDQHEWFKSSRAS 117

>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From Pseudomonas Mesoacidophila Mx-45 (Triclinic Form) Length = 557

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           WW+++VFY +YPRSFKD+NGDG+GD KG+ EKL ++L  LG+ A+WI+P + SP  D GY
Sbjct: 6   WWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKL-DYLKGLGIDAIWINPHYASPNTDNGY 64
Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PYK 155
           DISDY      +G ++DF+ L   L   G+++++D V NH+S+QHEWFK S A+   PY+
Sbjct: 65  DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 124

>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From Pseudomonas Mesoacidophila Mx-45 (Triclinic Form) Length = 557

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 22/81 (27%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KIL 197
           L  L  LG+ A+WI+P + SP  D GYDISDY  +                      +++
Sbjct: 38  LDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLM 97
Query: 198 LDFVPNHTSNQHEWFKKSLAN 218
           +D V NH+S+QHEWFK S A+
Sbjct: 98  VDVVINHSSDQHEWFKSSRAS 118

>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant Length = 557

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           WW+++VFY +YPRSFKD+NGDG+GD KG+ EKL ++L  LG+ A+WI+P + SP  D GY
Sbjct: 6   WWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKL-DYLKGLGIDAIWINPHYASPNTDNGY 64
Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PYK 155
           DISDY      +G ++DF+ L   L   G+++++D V NH+S+QHEWFK S A+   PY+
Sbjct: 65  DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 124

>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant Length = 557

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 22/81 (27%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KIL 197
           L  L  LG+ A+WI+P + SP  D GYDISDY  +                      +++
Sbjct: 38  LDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLM 97
Query: 198 LDFVPNHTSNQHEWFKKSLAN 218
           +D V NH+S+QHEWFK S A+
Sbjct: 98  VDVVINHSSDQHEWFKSSRAS 118

>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With Glucose Length = 557

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           WW+++VFY +YPRSFKD+NGDG+GD KG+ EKL ++L  LG+ A+WI+P + SP  D GY
Sbjct: 6   WWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKL-DYLKGLGIDAIWINPHYASPNTDNGY 64
Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PYK 155
           DISDY      +G ++DF+ L   L   G+++++D V NH+S+QHEWFK S A+   PY+
Sbjct: 65  DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 124

>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With Glucose Length = 557

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 22/81 (27%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KIL 197
           L  L  LG+ A+WI+P + SP  D GYDISDY  +                      +++
Sbjct: 38  LDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLM 97
Query: 198 LDFVPNHTSNQHEWFKKSLAN 218
           +D V NH+S+QHEWFK S A+
Sbjct: 98  VDVVINHSSDQHEWFKSSRAS 118

>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From Pseudomonas Mesoacidophila Mx-45 Complexed To The Inhibitor Castanospermine Length = 556

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           WW+++VFY +YPRSFKD+NGDG+GD KG+ EKL ++L  LG+ A+WI+P + SP  D GY
Sbjct: 5   WWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKL-DYLKGLGIDAIWINPHYASPNTDNGY 63
Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PYK 155
           DISDY      +G ++DF+ L   L   G+++++D V NH+S+QHEWFK S A+   PY+
Sbjct: 64  DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYR 123

>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From Pseudomonas Mesoacidophila Mx-45 Complexed To The Inhibitor Castanospermine Length = 556

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 22/81 (27%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KIL 197
           L  L  LG+ A+WI+P + SP  D GYDISDY  +                      +++
Sbjct: 37  LDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLM 96
Query: 198 LDFVPNHTSNQHEWFKKSLAN 218
           +D V NH+S+QHEWFK S A+
Sbjct: 97  VDVVINHSSDQHEWFKSSRAS 117

>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj Length = 555

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/114 (53%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           WW+  V Y +YPRSF D+NGDG+GDL+G+IEKL ++L +LGV  VWI PI++SP AD GY
Sbjct: 5   WWKEGVAYQIYPRSFMDANGDGIGDLRGIIEKL-DYLVELGVDIVWICPIYRSPNADNGY 63
Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
           DISDY +    FG + DF+ L  + H  G+K++LD V NHTS++H WF +S ++
Sbjct: 64  DISDYYAIMDEFGTMDDFDELLAQAHRRGLKVILDLVINHTSDEHPWFIESRSS 117

>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj Length = 555

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 22/78 (28%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
           L +LGV  VWI PI++SP AD GYDISDY  I                      K++LD 
Sbjct: 40  LVELGVDIVWICPIYRSPNADNGYDISDYYAIMDEFGTMDDFDELLAQAHRRGLKVILDL 99
Query: 201 VPNHTSNQHEWFKKSLAN 218
           V NHTS++H WF +S ++
Sbjct: 100 VINHTSDEHPWFIESRSS 117

>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase Length = 558

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
           +WW+ SV Y +YPRSF DSNGDG+GDL+G+I KL ++L +LG+  +W+SP+++SP  D G
Sbjct: 4   QWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKL-DYLKELGIDVIWLSPVYESPNDDNG 62
Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147
           YDISDY      FG ++D++ L   +H   +K+++D V NHTS++H WF +S
Sbjct: 63  YDISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIES 114

>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase Length = 558

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 22/80 (27%)
Query: 158 SLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------K 195
           S L  L +LG+  +W+SP+++SP  D GYDISDY +I                      K
Sbjct: 35  SKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMK 94
Query: 196 ILLDFVPNHTSNQHEWFKKS 215
           +++D V NHTS++H WF +S
Sbjct: 95  LMMDLVVNHTSDEHNWFIES 114

>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From Lactobacillus Acidophilus Ncfm Length = 549

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           WW+ +V Y +YP+SF+DSNGDG+GDL+G+I +L ++L  LG+ A+W+SP+++SP  D GY
Sbjct: 6   WWKNAVVYQVYPKSFQDSNGDGIGDLQGIISRL-DYLEKLGIDAIWLSPVYQSPGVDNGY 64
Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144
           DISDY + +P +G + D + L  +     IKI++D V NHTS+QH+WF
Sbjct: 65  DISDYEAIDPQYGTMADMDELISKAKEHHIKIVMDLVVNHTSDQHKWF 112

>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From Lactobacillus Acidophilus Ncfm Length = 549

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 22/77 (28%)
Query: 158 SLLARLHDLGVGAVWISPIFKSPMADFGYDISDYL----------------------RIK 195
           S L  L  LG+ A+W+SP+++SP  D GYDISDY                        IK
Sbjct: 36  SRLDYLEKLGIDAIWLSPVYQSPGVDNGYDISDYEAIDPQYGTMADMDELISKAKEHHIK 95
Query: 196 ILLDFVPNHTSNQHEWF 212
           I++D V NHTS+QH+WF
Sbjct: 96  IVMDLVVNHTSDQHKWF 112

>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From Protaminobacter Rubrum Length = 558

Iteration: 1
 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 86/121 (71%), Gaps = 2/121 (1%)
Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
           +WW+ +VFY +YPRSFKD+NGDG+GD+ G+IEKL ++L  LG+ A+WI+P + SP  D G
Sbjct: 4   KWWKEAVFYQVYPRSFKDTNGDGIGDINGIIEKL-DYLKALGIDAIWINPHYDSPNTDNG 62
Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP-PY 154
           YDI DY      +G ++DF+ L   +    +++++D V NHTS+Q+EWF KS ++   PY
Sbjct: 63  YDIRDYRKIMKEYGTMEDFDRLISEMKKRNMRLMIDVVINHTSDQNEWFVKSKSSKDNPY 122
Query: 155 K 155
           +
Sbjct: 123 R 123

>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From Protaminobacter Rubrum Length = 558

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 22/78 (28%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KIL 197
           L  L  LG+ A+WI+P + SP  D GYDI DY +I                      +++
Sbjct: 37  LDYLKALGIDAIWINPHYDSPNTDNGYDIRDYRKIMKEYGTMEDFDRLISEMKKRNMRLM 96
Query: 198 LDFVPNHTSNQHEWFKKS 215
           +D V NHTS+Q+EWF KS
Sbjct: 97  IDVVINHTSDQNEWFVKS 114

>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From Klebsiella Sp. Lx3 Length = 570

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 92/132 (69%), Gaps = 5/132 (3%)
Query: 28  DVPIQEPLE---WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWIS 84
           D+ +Q+  E   WW+ +VFY +YPRSFKD+N DG+GD++G+IEKL ++L  LG+ A+WI+
Sbjct: 7   DIHVQKESEYPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKL-DYLKSLGIDAIWIN 65
Query: 85  PIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144
           P + SP  D GYDIS+Y      +G ++DF++L   +    +++++D V NHTS+QH WF
Sbjct: 66  PHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWF 125
Query: 145 KKSLANI-PPYK 155
            +S ++   PY+
Sbjct: 126 IQSKSDKNNPYR 137

>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From Klebsiella Sp. Lx3 Length = 570

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 22/78 (28%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
           L  LG+ A+WI+P + SP  D GYDIS+Y +I                      ++++D 
Sbjct: 54  LKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDV 113
Query: 201 VPNHTSNQHEWFKKSLAN 218
           V NHTS+QH WF +S ++
Sbjct: 114 VINHTSDQHPWFIQSKSD 131

>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces Cerevisiae Length = 589

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 82/121 (67%), Gaps = 2/121 (1%)
Query: 30  PIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS 89
           P  EP +WW+ + FY +YP SFKDSN DG GD+KG+  KL E++ +LG  A+WISP + S
Sbjct: 8   PETEP-KWWKEATFYQIYPASFKDSNDDGWGDMKGIASKL-EYIKELGADAIWISPFYDS 65
Query: 90  PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLA 149
           P  D GYDI++Y    P +G  +D   L E+ H LG+K + D V NH S++HEWFK+S +
Sbjct: 66  PQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFITDLVINHCSSEHEWFKESRS 125
Query: 150 N 150
           +
Sbjct: 126 S 126

>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces Cerevisiae Length = 589

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 22/84 (26%)
Query: 157 ASLLARLHDLGVGAVWISPIFKSPMADFGYDISDY----------------------LRI 194
           AS L  + +LG  A+WISP + SP  D GYDI++Y                      L +
Sbjct: 43  ASKLEYIKELGADAIWISPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGM 102
Query: 195 KILLDFVPNHTSNQHEWFKKSLAN 218
           K + D V NH S++HEWFK+S ++
Sbjct: 103 KFITDLVINHCSSEHEWFKESRSS 126

>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose Length = 589

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 82/121 (67%), Gaps = 2/121 (1%)
Query: 30  PIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS 89
           P  EP +WW+ + FY +YP SFKDSN DG GD+KG+  KL E++ +LG  A+WISP + S
Sbjct: 8   PETEP-KWWKEATFYQIYPASFKDSNDDGWGDMKGIASKL-EYIKELGADAIWISPFYDS 65
Query: 90  PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLA 149
           P  D GYDI++Y    P +G  +D   L E+ H LG+K + D V NH S++HEWFK+S +
Sbjct: 66  PQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFITDLVINHCSSEHEWFKESRS 125
Query: 150 N 150
           +
Sbjct: 126 S 126

>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose Length = 589

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 22/84 (26%)
Query: 157 ASLLARLHDLGVGAVWISPIFKSPMADFGYDISDY----------------------LRI 194
           AS L  + +LG  A+WISP + SP  D GYDI++Y                      L +
Sbjct: 43  ASKLEYIKELGADAIWISPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGM 102
Query: 195 KILLDFVPNHTSNQHEWFKKSLAN 218
           K + D V NH S++HEWFK+S ++
Sbjct: 103 KFITDLVINHCSSEHEWFKESRSS 126

>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran Glucosidase Length = 543

Iteration: 1
 Score =  124 bits (311), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           WW  +  Y +YP+SF D+NGDG+GDLKG+  KL ++L  LGV A+W+SP++ SPM D GY
Sbjct: 5   WWHKATVYQIYPKSFMDTNGDGIGDLKGITSKL-DYLQKLGVMAIWLSPVYDSPMDDNGY 63
Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144
           DI++Y +   +FG++ D + L  +    GIKI++D V NHTS++H WF
Sbjct: 64  DIANYEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHTSDEHAWF 111

>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran Glucosidase Length = 543

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 22/79 (27%)
Query: 156 CASLLARLHDLGVGAVWISPIFKSPMADFGYDISDY---------------------LR- 193
             S L  L  LGV A+W+SP++ SPM D GYDI++Y                     +R 
Sbjct: 33  ITSKLDYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRG 92
Query: 194 IKILLDFVPNHTSNQHEWF 212
           IKI++D V NHTS++H WF
Sbjct: 93  IKIIMDLVVNHTSDEHAWF 111

>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex With Isomaltotriose Length = 543

Iteration: 1
 Score =  124 bits (311), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           WW  +  Y +YP+SF D+NGDG+GDLKG+  KL ++L  LGV A+W+SP++ SPM D GY
Sbjct: 5   WWHKATVYQIYPKSFMDTNGDGIGDLKGITSKL-DYLQKLGVMAIWLSPVYDSPMDDNGY 63
Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144
           DI++Y +   +FG++ D + L  +    GIKI++D V NHTS++H WF
Sbjct: 64  DIANYEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHTSDEHAWF 111

>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex With Isomaltotriose Length = 543

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 22/79 (27%)
Query: 156 CASLLARLHDLGVGAVWISPIFKSPMADFGYDISDY---------------------LR- 193
             S L  L  LGV A+W+SP++ SPM D GYDI++Y                     +R 
Sbjct: 33  ITSKLDYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRG 92
Query: 194 IKILLDFVPNHTSNQHEWF 212
           IKI++D V NHTS++H WF
Sbjct: 93  IKIIMDLVVNHTSDEHAWF 111

>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii Length = 488

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 75/114 (65%), Gaps = 8/114 (7%)
Query: 41  SVFYHLYPRSFKDSNGDGVGDLKGMIEKL-------PEHLHDLGVGAVWISPIFKSPMAD 93
             +Y ++ RSF DS+GDG+GDLKG+IEKL       PE + DLGV  +W+ PIFKSP + 
Sbjct: 5   GTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSP-SY 63
Query: 94  FGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147
            GYD++DY    P +G L+DF  L E  H  GIK+++D   NHTS +H WF K+
Sbjct: 64  HGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKA 117

>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii Length = 488

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 23/75 (30%)
Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
           + DLGV  +W+ PIFKSP +  GYD++DY +I                      K+++D 
Sbjct: 44  IADLGVNGIWLMPIFKSP-SYHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDL 102
Query: 201 VPNHTSNQHEWFKKS 215
             NHTS +H WF K+
Sbjct: 103 PINHTSERHPWFLKA 117

>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose Length = 669

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 8/165 (4%)
Query: 34  PLEWWQTS---VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP 90
           P  W +T    + Y L   SF DS+GDG GDL G+ +KL ++L+ LGV A+W+SPI    
Sbjct: 28  PDTWDETKRADISYQLLLYSFADSDGDGYGDLNGVTQKL-DYLNQLGVKALWLSPIHPC- 85
Query: 91  MADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKK-SLA 149
           M+  GYD++DY    P  G   DF+ L    H  GIKI LD+V NHT   H WF + S +
Sbjct: 86  MSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKIYLDYVMNHTGTAHPWFTEASSS 145
Query: 150 NIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI 194
           +  PY+     +      + A  I+ I +   A  GY+ +++ ++
Sbjct: 146 SESPYRNYYSFSEDPKTDIAAGKIAMITQEGAA--GYNAAEWFQV 188

>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose Length = 669

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 24/86 (27%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKIL 197
           L  L+ LGV A+W+SPI    M+  GYD++DY +                      IKI 
Sbjct: 66  LDYLNQLGVKALWLSPIHPC-MSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKIY 124
Query: 198 LDFVPNHTSNQHEWFKK-SLANIPPY 222
           LD+V NHT   H WF + S ++  PY
Sbjct: 125 LDYVMNHTGTAHPWFTEASSSSESPY 150

>pdb|3K8K|A Chain A, Crystal Structure Of Susg Length = 669

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 34  PLEWWQTS---VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP 90
           P  W +T    + Y L   SF DS+GDG GDL G+ +KL ++L+ LGV A+W+SPI   P
Sbjct: 28  PDTWDETKRADISYQLLLYSFADSDGDGYGDLNGVTQKL-DYLNQLGVKALWLSPIH--P 84
Query: 91  MADF-GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKK-SL 148
              + GYD++DY    P  G   DF+ L    H  GIKI LD+V NHT   H WF + S 
Sbjct: 85  CXSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKIYLDYVXNHTGTAHPWFTEASS 144
Query: 149 ANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI 194
           ++  PY+     +      + A  I+ I +   A  GY+ +++ ++
Sbjct: 145 SSESPYRNYYSFSEDPKTDIAAGKIAXITQEGAA--GYNAAEWFQV 188

>pdb|3K8K|A Chain A, Crystal Structure Of Susg Length = 669

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 26/87 (29%)
Query: 160 LARLHDLGVGAVWISPIFKSPMADF-GYDISDYLR----------------------IKI 196
           L  L+ LGV A+W+SPI   P   + GYD++DY +                      IKI
Sbjct: 66  LDYLNQLGVKALWLSPIH--PCXSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKI 123
Query: 197 LLDFVPNHTSNQHEWFKK-SLANIPPY 222
            LD+V NHT   H WF + S ++  PY
Sbjct: 124 YLDYVXNHTGTAHPWFTEASSSSESPY 150

>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-Glucanotransferase Length = 441

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 80/141 (56%), Gaps = 3/141 (2%)
Query: 44  YHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLS 103
           Y +Y RSF+D N DGVGD +G+   +  +L +LG+  VW+ P+F S ++  GYD+ D+ S
Sbjct: 4   YQIYVRSFRDGNLDGVGDFRGLKNAVS-YLKELGIDFVWLMPVF-SSISFHGYDVVDFYS 61
Query: 104 FEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLA-R 162
           F+  +G  ++F+ + E  H  GIK++LD   +HT   H WF+K+L   P Y+   + A +
Sbjct: 62  FKAEYGSEREFKEMIEAFHDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANK 121
Query: 163 LHDLGVGAVWISPIFKSPMAD 183
             DL     W       P+ D
Sbjct: 122 ETDLDERREWDGEKIWHPLED 142

>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin Complex Length = 585

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36  EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
           EW + +V Y ++P  F  +NGD      G                 GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74  HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
            +LGV A++ +PIF SP +   YD +DYL+ +P FGDL  F  L +  H  GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
            NH  +Q   F+  L
Sbjct: 242 FNHAGDQFFAFRDVL 256

>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii) Mutatnt D465n Length = 585

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36  EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
           EW + +V Y ++P  F  +NGD      G                 GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74  HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
            +LGV A++ +PIF SP +   YD +DYL+ +P FGDL  F  L +  H  GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
            NH  +Q   F+  L
Sbjct: 242 FNHAGDQFFAFRDVL 256

>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii) Mutatnt R469l Length = 585

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36  EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
           EW + +V Y ++P  F  +NGD      G                 GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74  HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
            +LGV A++ +PIF SP +   YD +DYL+ +P FGDL  F  L +  H  GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
            NH  +Q   F+  L
Sbjct: 242 FNHAGDQFFAFRDVL 256

>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin Based On A Co- Crystallization With Methyl Beta-Cyclodextrin Length = 585

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36  EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
           EW + +V Y ++P  F  +NGD      G                 GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74  HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
            +LGV A++ +PIF SP +   YD +DYL+ +P FGDL  F  L +  H  GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
            NH  +Q   F+  L
Sbjct: 242 FNHAGDQFFAFRDVL 256

>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris R- 47 Length = 585

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36  EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
           EW + +V Y ++P  F  +NGD      G                 GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74  HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
            +LGV A++ +PIF SP +   YD +DYL+ +P FGDL  F  L +  H  GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
            NH  +Q   F+  L
Sbjct: 242 FNHAGDQFFAFRDVL 256

>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii) Mutatnt R469k Length = 585

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36  EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
           EW + +V Y ++P  F  +NGD      G                 GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74  HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
            +LGV A++ +PIF SP +   YD +DYL+ +P FGDL  F  L +  H  GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
            NH  +Q   F+  L
Sbjct: 242 FNHAGDQFFAFRDVL 256

>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase 2ALPHA-Cyclodextrin Complex Length = 585

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36  EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
           EW + +V Y ++P  F  +NGD      G                 GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74  HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
            +LGV A++ +PIF SP +   YD +DYL+ +P FGDL  F  L +  H  GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
            NH  +Q   F+  L
Sbjct: 242 FNHAGDQFFAFRDVL 256

>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase 2 Mutant F286a Length = 585

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36  EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
           EW + +V Y ++P  F  +NGD      G                 GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74  HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
            +LGV A++ +PIF SP +   YD +DYL+ +P FGDL  F  L +  H  GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
            NH  +Q   F+  L
Sbjct: 242 FNHAGDQFFAFRDVL 256

>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase Mutant F286y Length = 585

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 36  EWWQTSVFYHLYPRSFKDSNGD------GV----------------GDLKGMIEKLPEHL 73
           EW + +V Y ++P  F  +NGD      G                 GDLKG+I++LP +L
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YL 182
Query: 74  HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
            +LGV A++ +PIF SP +   YD +DYL+ +P FGDL  F  L +  H  GIKI+LD V
Sbjct: 183 EELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 134 PNHTSNQHEWFKKSL 148
            NH  +Q   F+  L
Sbjct: 242 FNHAGDQFFAFRDVL 256

>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of Amylosucrase From Neisseria Polysaccharea In Complex With The Natural Substrate Sucrose Length = 628

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 59  VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLFGDLKDFET 116
            GDLKG+ +K+P +  +LG+  +++ P+FK P   +D GY +S Y    P  G + D   
Sbjct: 109 AGDLKGLKDKIP-YFQELGLTYLYLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLRE 167
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
           +   LH  GI  ++DF+ NHTSN+HEW ++  A  P
Sbjct: 168 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDP 203

>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of Amylosucrase From Neisseria Polysaccharea In Complex With The Natural Substrate Sucrose Length = 628

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 24/82 (29%)
Query: 163 LHDLGVGAVWISPIFKSP--MADFGYDISDY------------LR----------IKILL 198
             +LG+  +++ P+FK P   +D GY +S Y            LR          I  ++
Sbjct: 122 FQELGLTYLYLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVV 181
Query: 199 DFVPNHTSNQHEWFKKSLANIP 220
           DF+ NHTSN+HEW ++  A  P
Sbjct: 182 DFIFNHTSNEHEWAQRCAAGDP 203

>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With Maltoheptaose. Length = 628

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 59  VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLFGDLKDFET 116
            GDLKG+ +K+P +  +LG+  +++ P+FK P   +D GY +S Y    P  G + D   
Sbjct: 109 AGDLKGLKDKIP-YFQELGLTYLYLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLRE 167
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
           +   LH  GI  ++DF+ NHTSN+HEW ++  A  P
Sbjct: 168 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDP 203

>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With Maltoheptaose. Length = 628

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 24/82 (29%)
Query: 163 LHDLGVGAVWISPIFKSP--MADFGYDISDY------------LR----------IKILL 198
             +LG+  +++ P+FK P   +D GY +S Y            LR          I  ++
Sbjct: 122 FQELGLTYLYLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVV 181
Query: 199 DFVPNHTSNQHEWFKKSLANIP 220
           DF+ NHTSN+HEW ++  A  P
Sbjct: 182 DFIFNHTSNEHEWAQRCAAGDP 203

>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd Length = 588

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 21/134 (15%)
Query: 36  EWWQTSVFYHLYPRSFKDSNG----DGV---------------GDLKGMIEKLPEHLHDL 76
           +W + +V+Y ++P  F + N      G                GDL+G+I+ L ++L DL
Sbjct: 130 DWVKDTVWYQIFPERFANGNPAISPKGARPWGSEDPTPTSFFGGDLQGIIDHL-DYLADL 188
Query: 77  GVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
           G+  ++++PIF++P ++  YD +DY   +P FGD +  +TL +R H  GI+++LD V NH
Sbjct: 189 GITGIYLTPIFRAP-SNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKGIRVMLDAVFNH 247
Query: 137 TSNQHEWFKKSLAN 150
              +   F+  L N
Sbjct: 248 CGYEFAPFQDVLKN 261

>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase Length = 588

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 21/134 (15%)
Query: 36  EWWQTSVFYHLYPRSFKDSNG----DGV---------------GDLKGMIEKLPEHLHDL 76
           +W + +V+Y ++P  F + N      G                GDL+G+I+ L ++L DL
Sbjct: 130 DWVKDTVWYQIFPERFANGNPAISPKGARPWGSEDPTPTSFFGGDLQGIIDHL-DYLADL 188
Query: 77  GVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
           G+  ++++PIF++P ++  YD +DY   +P FGD +  +TL +R H  GI+++LD V NH
Sbjct: 189 GITGIYLTPIFRAP-SNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKGIRVMLDAVFNH 247
Query: 137 TSNQHEWFKKSLAN 150
              +   F+  L N
Sbjct: 248 CGYEFAPFQDVLKN 261

>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant F290k-E328q From Neisseria Polysaccharea In Complex With Sucrose Length = 628

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 59  VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLFGDLKDFET 116
            GDLKG+ +K+P +  +LG+  + + P+FK P   +D GY +S Y    P  G + D   
Sbjct: 109 AGDLKGLKDKIP-YFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLRE 167
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
           +   LH  GI  ++DF+ NHTSN+HEW ++  A  P
Sbjct: 168 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDP 203

>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant A289p-F290c From Neisseria Polysaccharea Length = 628

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 59  VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLFGDLKDFET 116
            GDLKG+ +K+P +  +LG+  + + P+FK P   +D GY +S Y    P  G + D   
Sbjct: 109 AGDLKGLKDKIP-YFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLRE 167
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
           +   LH  GI  ++DF+ NHTSN+HEW ++  A  P
Sbjct: 168 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDP 203

>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea Length = 628

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 59  VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLFGDLKDFET 116
            GDLKG+ +K+P +  +LG+  + + P+FK P   +D GY +S Y    P  G + D   
Sbjct: 109 AGDLKGLKDKIP-YFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLRE 167
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
           +   LH  GI  ++DF+ NHTSN+HEW ++  A  P
Sbjct: 168 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDP 203

>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant A289p-F290l From Neisseria Polysaccharea Length = 628

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 59  VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLFGDLKDFET 116
            GDLKG+ +K+P +  +LG+  + + P+FK P   +D GY +S Y    P  G + D   
Sbjct: 109 AGDLKGLKDKIP-YFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLRE 167
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
           +   LH  GI  ++DF+ NHTSN+HEW ++  A  P
Sbjct: 168 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDP 203

>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria Polysaccharea In Complex With Turanose Length = 632

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 59  VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLFGDLKDFET 116
            GDLKG+ +K+P +  +LG+  + + P+FK P   +D GY +S Y    P  G + D   
Sbjct: 113 AGDLKGLKDKIP-YFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLRE 171
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
           +   LH  GI  ++DF+ NHTSN+HEW ++  A  P
Sbjct: 172 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDP 207

>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant A289p-F290i From Neisseria Polysaccharea Length = 628

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 59  VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLFGDLKDFET 116
            GDLKG+ +K+P +  +LG+  + + P+FK P   +D GY +S Y    P  G + D   
Sbjct: 109 AGDLKGLKDKIP-YFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLRE 167
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
           +   LH  GI  ++DF+ NHTSN+HEW ++  A  P
Sbjct: 168 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDP 203

>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With Maltotetraose Length = 588

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 21/141 (14%)
Query: 29  VPIQEPLEWWQTSVFYHLYPRSFKDSNG----DGV---------------GDLKGMIEKL 69
           V + E  +W + +V+Y ++P  F + N     +G                GDL+G+I+ L
Sbjct: 123 VDLFEAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHL 182
Query: 70  PEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKIL 129
            ++L DLG+  ++++PIF+SP ++  YD +DY   +P FGD +  +TL +R H  GI+++
Sbjct: 183 -DYLVDLGITGIYLTPIFRSP-SNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVM 240
Query: 130 LDFVPNHTSNQHEWFKKSLAN 150
           LD V NH   +   F+    N
Sbjct: 241 LDAVFNHCGYEFAPFQDVWKN 261

>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Neopullulanase Length = 588

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 21/141 (14%)
Query: 29  VPIQEPLEWWQTSVFYHLYPRSFKDSNG----DGV---------------GDLKGMIEKL 69
           V + E  +W + +V+Y ++P  F + N     +G                GDL+G+I+ L
Sbjct: 123 VDLFEAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHL 182
Query: 70  PEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKIL 129
            ++L DLG+  ++++PIF+SP ++  YD +DY   +P FGD +  +TL +R H  GI+++
Sbjct: 183 -DYLVDLGITGIYLTPIFRSP-SNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVM 240
Query: 130 LDFVPNHTSNQHEWFKKSLAN 150
           LD V NH   +   F+    N
Sbjct: 241 LDAVFNHCGYEFAPFQDVWKN 261

>pdb|1EA9|C Chain C, Cyclomaltodextrinase Length = 583

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 25/143 (17%)
Query: 29  VPIQEPLEWWQTSVFYHLYPRSFKDSNGDGV---------------------GDLKGMIE 67
           V + +P  W + ++FY ++P  F  +NGD                       GDL+G+I+
Sbjct: 119 VDVFQPPAWVKDAIFYQIFPERF--ANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVID 176
Query: 68  KLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            L +HL  LGV AV+ +P+FK+   +  YD  DY   +P FGD    + L +  H  GI+
Sbjct: 177 HL-DHLSKLGVNAVYFTPLFKA-TTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIR 234
Query: 128 ILLDFVPNHTSNQHEWFKKSLAN 150
           +LLD V NH+      F   L N
Sbjct: 235 VLLDAVFNHSGRTFPPFVDVLKN 257

>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus Length = 696

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 22/153 (14%)
Query: 29  VPIQEPLEWWQTSVFYHLYPRSFKDSN-----------------GDGVGDLKGMIEKLPE 71
           +P  +   W+  +V+Y ++  SF + +                 G   GDL G+++ + +
Sbjct: 214 IPGVDKPRWYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDLAGIMKHI-D 272
Query: 72  HLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLD 131
           HL DLGV  ++++PIF S  +   YD  DY S +   G ++DFE L + LH+  IKI+LD
Sbjct: 273 HLEDLGVETIYLTPIFSS-TSYHRYDTIDYKSIDKYLGTMEDFEKLVQVLHSRKIKIVLD 331
Query: 132 FVPNHTSNQHEWFKKSL---ANIPPYKCASLLA 161
              +HT+  +E F K+L    N P ++  S L+
Sbjct: 332 ITMHHTNPCNELFVKALREGENSPYWEMFSFLS 364

>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase) Length = 680

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/113 (38%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Query: 60  GDLKGMIEKLPE-HLHDLGVGAVWIS-PIFK--SPMAD-------FGYDISDYLSFEPLF 108
           GD +G+I K+ + +L D+GV A+WIS P+    S M D        GY   D+    P F
Sbjct: 49  GDWQGIINKINDGYLTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFF 108
Query: 109 GDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLA 161
           G L DF+ L +  HA GIK+++DF PNHTS   E     + N   Y   +LL 
Sbjct: 109 GTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLG 161

>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus Geothermalis Length = 655

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 59  VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA--DFGYDISDYLSFEPLFGDLKDFET 116
            G LKG+ E+L ++L  LGV  + + P+ +      D GY + DY +  P  G + D   
Sbjct: 107 AGTLKGVEERL-DYLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVRPDLGTMDDLSA 165
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKC 156
           L   L   GI ++LD V NH + +H W +K+ A  P Y+ 
Sbjct: 166 LARALRGRGISLVLDLVLNHVAREHAWAQKARAGDPKYRA 205

>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant Length = 684

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Query: 60  GDLKGMIEKLPE-HLHDLGVGAVWISPIFKSPMADF-----------GYDISDYLSFEPL 107
           GD +G+I K+ + +  DLGV A+WIS   ++  A             GY   D+    P 
Sbjct: 52  GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 108 FGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE 142
           FG + DF+ L    HA GIKI++DF PNHTS   E
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAME 146

>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase Derived From X-Ray Structure Analysis Combined With Site- Directed Mutagenesis Length = 684

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Query: 60  GDLKGMIEKLPE-HLHDLGVGAVWISPIFKSPMADF-----------GYDISDYLSFEPL 107
           GD +G+I K+ + +  DLGV A+WIS   ++  A             GY   D+    P 
Sbjct: 52  GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 108 FGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE 142
           FG + DF+ L    HA GIKI++DF PNHTS   E
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAME 146

>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At 2.0 Angstroms Resolution Length = 684

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Query: 60  GDLKGMIEKLPE-HLHDLGVGAVWISPIFKSPMADF-----------GYDISDYLSFEPL 107
           GD +G+I K+ + +  DLGV A+WIS   ++  A             GY   D+    P 
Sbjct: 52  GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 108 FGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE 142
           FG + DF+ L    HA GIKI++DF PNHTS   E
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAME 146

>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed With A Thio-Maltohexaose Length = 684

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Query: 60  GDLKGMIEKLPE-HLHDLGVGAVWISPIFKSPMADF-----------GYDISDYLSFEPL 107
           GD +G+I K+ + +  DLGV A+WIS   ++  A             GY   D+    P 
Sbjct: 52  GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 108 FGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE 142
           FG + DF+ L    HA GIKI++DF PNHTS   E
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAME 146

>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin Glycosyltransferase Length = 678

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 60  GDLKGMIEKLPE-HLHDLGVGAVWISPIFKSPMADF-----------GYDISDYLSFEPL 107
           GD +G+I K+ + +  DLGV A+WIS   ++  A             GY   D+    P 
Sbjct: 52  GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 108 FGDLKDFETLKERLHALGIKILLDFVPNHTS 138
           FG + DF+ L    HA GIKI++DF PNHTS
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTS 142

>pdb|2WPG|A Chain A, Sucrose Hydrolase Length = 637

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 59  VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD--FGYDISDYLSFEPLFGDLKDFET 116
            G L+G+ E++P +L +LGV  + + P  ++   D   G+ +SDY   EP  G   D   
Sbjct: 103 AGTLRGVAERVP-YLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPALGSNDDLVA 161
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
           L  RL A  I +  DFV NHT++ H W + + A    Y
Sbjct: 162 LTARLRAANISLCADFVLNHTADDHAWAQAARAGDTRY 199

>pdb|1IZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase 1 Mutant Enzyme W398v Length = 637

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119
           GDL G+ +KL      LG   ++++PIFK+P  +  YD  DY++ +P FGD    +TL  
Sbjct: 188 GDLAGIDQKLGYIKKTLGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLIN 246
Query: 120 RLH--ALGIK--ILLDFVPNHTSNQHEWFKK 146
            +H  A G K  ++LD V NHT + H WF K
Sbjct: 247 DIHSTANGPKGYLILDGVFNHTGDSHPWFDK 277

>pdb|1UH2|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseMALTO-Hexaose Complex Length = 637

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119
           GDL G+ +KL      LG   ++++PIFK+P  +  YD  DY++ +P FGD    +TL  
Sbjct: 188 GDLAGIDQKLGYIKKTLGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLIN 246
Query: 120 RLH--ALGIK--ILLDFVPNHTSNQHEWFKK 146
            +H  A G K  ++LD V NHT + H WF K
Sbjct: 247 DIHSTANGPKGYLILDGVFNHTGDSHPWFDK 277

>pdb|2D0F|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase 1 (Tvai) Mutant D356n Complexed With P2, A Pullulan Model Oligosaccharide Length = 637

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119
           GDL G+ +KL      LG   ++++PIFK+P  +  YD  DY++ +P FGD    +TL  
Sbjct: 188 GDLAGIDQKLGYIKKTLGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLIN 246
Query: 120 RLH--ALGIK--ILLDFVPNHTSNQHEWFKK 146
            +H  A G K  ++LD V NHT + H WF K
Sbjct: 247 DIHSTANGPKGYLILDGVFNHTGDSHPWFDK 277

>pdb|1IZJ|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1 Mutant Enzyme F313a Length = 637

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119
           GDL G+ +KL      LG   ++++PIFK+P  +  YD  DY++ +P FGD    +TL  
Sbjct: 188 GDLAGIDQKLGYIKKTLGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLIN 246
Query: 120 RLH--ALGIK--ILLDFVPNHTSNQHEWFKK 146
            +H  A G K  ++LD V NHT + H WF K
Sbjct: 247 DIHSTANGPKGYLILDGVFNHTGDSHPWFDK 277

>pdb|1JI1|A Chain A, Crystal Structure Analysis Of Thermoactinomyces Vulgaris R- 47 Alpha-amylase 1 Length = 637

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119
           GDL G+ +KL      LG   ++++PIFK+P  +  YD  DY++ +P FGD    +TL  
Sbjct: 188 GDLAGIDQKLGYIKKTLGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLIN 246
Query: 120 RLH--ALGIK--ILLDFVPNHTSNQHEWFKK 146
            +H  A G K  ++LD V NHT + H WF K
Sbjct: 247 DIHSTANGPKGYLILDGVFNHTGDSHPWFDK 277

>pdb|3CZK|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh) E322q- Sucrose Complex Length = 644

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 59  VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD--FGYDISDYLSFEPLFGDLKDFET 116
            G L+G+ E++P +L +LGV  + + P  ++   D   G+ +SDY   EP  G   D   
Sbjct: 102 AGTLQGVAERVP-YLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVA 160
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
           L  RL   GI +  DFV NHT++ H W + + A    Y
Sbjct: 161 LTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARY 198

>pdb|3CZE|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase (Suh)- Tris Complex Length = 644

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 59  VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD--FGYDISDYLSFEPLFGDLKDFET 116
            G L+G+ E++P +L +LGV  + + P  ++   D   G+ +SDY   EP  G   D   
Sbjct: 102 AGTLQGVAERVP-YLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVA 160
Query: 117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
           L  RL   GI +  DFV NHT++ H W + + A    Y
Sbjct: 161 LTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARY 198

>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus Stearothermophilus, MaltoseACARBOSE COMPLEX Length = 686

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKS--------PMADFGYDISDYLSFEPLFGDL 111
           GDL+G+ +KLP +L  LGV  +W+SP+  +             GY   D+   E  FG+ 
Sbjct: 49  GDLEGVRQKLP-YLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNW 107
Query: 112 KDFETLKERLHALGIKILLDFVPNHTS 138
             F+TL    H  GIK+++DFVPNH++
Sbjct: 108 TTFDTLVNDAHQNGIKVIVDFVPNHST 134

>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching Enzyme( Npde)(Acarbose Soaked) Length = 488

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 25/144 (17%)
Query: 31  IQEPLEWWQTSVFYHLYPRSFKDS----------------------NGDGVGDLKGMIEK 68
           IQ P +W + +VFY ++P  F  S                       G   GDL G++E 
Sbjct: 3   IQTP-DWVKHAVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMED 61
Query: 69  LPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKI 128
           L +++ +LG+ A++ +PIF+S  ++  Y   DY   +P+ G  + F+ L +  H   IK+
Sbjct: 62  L-DYIQNLGINAIYFTPIFQS-ASNHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKV 119
Query: 129 LLDFVPNHTSNQHEWFKKSLANIP 152
           +LD V NH+S    +F   L N P
Sbjct: 120 VLDGVFNHSSRGFFFFHDVLENGP 143

>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus Plantarum Length = 449

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 23/121 (19%)
Query: 39  QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG--- 95
           +  + Y ++ R++ ++     G+  G+   L + + DLG   +W+ PI  +P+ +     
Sbjct: 11  RNEMIYSVFVRNYSEA-----GNFAGVTADL-QRIKDLGTDILWLLPI--NPIGEVNRKG 62
Query: 96  -----YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS------NQH-EW 143
                Y I DY    P +G L DF+ L +R H LG+K++LD V NHTS       +H EW
Sbjct: 63  TLGSPYAIKDYRGINPEYGTLADFKALTDRAHELGMKVMLDIVYNHTSPDSVLATEHPEW 122
Query: 144 F 144
           F
Sbjct: 123 F 123

>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The Pyrococcus Length = 645

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 12/119 (10%)
Query: 37  WWQTSVFYHLYPRSFKDSNG-DGV---------GDLKGMIEKLPEHLHDLGVGAVWISPI 86
           W    VFY + P  F  S    G+         GDL G+ EK+ +HL +LG+ A++++PI
Sbjct: 203 WVIDRVFYQIMPDKFARSRKIQGIAYPKDKYWGGDLIGIKEKI-DHLVNLGINAIYLTPI 261
Query: 87  FKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK 145
           F S +   GYDI DY       G  + F  L   L    IK++LD V +HTS  H +F+
Sbjct: 262 F-SSLTYHGYDIVDYFHVARRLGGDRAFVDLLSELKRFDIKVILDGVFHHTSFFHPYFQ 319

>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1 In Complex With A Maltohexaose Inhibitor Length = 683

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 60  GDLKGMIEKLPE-HLHDLGVGAVWIS-PI-----------FKSPMADFGYDISDYLSFEP 106
           GD +G+I K+ + +L  +GV A+WIS P+           F    +  GY   D+    P
Sbjct: 52  GDWQGIINKINDGYLTGMGVTAIWISQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNP 111
Query: 107 LFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE 142
            FG   DF+ L    HA  IK+++DF PNHTS   E
Sbjct: 112 YFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASE 147

>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From Bacillus Circulans Strain 251 Length = 686

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +GV
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G + DF+ L    HA  IK
Sbjct: 72  TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN Glucanotransferase Complexed With A Pseudo-Maltotetraose Derived From Acarbose Length = 686

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +G+
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTGMGI 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G ++DF+ L +  HA  IK
Sbjct: 72  TAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin Glucanotransferase From Alkalophilic Bacillus Sp. 1011 Determined At 1.9 A Resolution Length = 686

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +G+
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTGMGI 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G ++DF+ L +  HA  IK
Sbjct: 72  TAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus Circulans Strain 251 Cgtase E257qD229N Length = 686

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +GV
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G + DF+ L    HA  IK
Sbjct: 72  TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +GV
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G + DF+ L    HA  IK
Sbjct: 72  TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin Glycosyltransferase Length = 686

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +G+
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTGMGI 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G ++DF+ L +  HA  IK
Sbjct: 72  TAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin Glycosyltransferase Length = 686

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +G+
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTGMGI 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G ++DF+ L +  HA  IK
Sbjct: 72  TAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyltransferase In Complex With Maltoheptaose Length = 686

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +GV
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G + DF+ L    HA  IK
Sbjct: 72  TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl Transferase Mutant N193g Length = 686

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +GV
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G + DF+ L    HA  IK
Sbjct: 72  TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +GV
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G + DF+ L    HA  IK
Sbjct: 72  TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase Length = 686

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +G+
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTGMGI 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G ++DF+ L +  HA  IK
Sbjct: 72  TAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 In A Maltose-Dependent Crystal Form Length = 686

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +GV
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G + DF+ L    HA  IK
Sbjct: 72  TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl Transferase Mutant G179l Length = 686

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +GV
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G + DF+ L    HA  IK
Sbjct: 72  TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +GV
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G + DF+ L    HA  IK
Sbjct: 72  TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus Circulans Strain 251 Cgtase E257q Length = 686

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +GV
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G + DF+ L    HA  IK
Sbjct: 72  TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +GV
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G + DF+ L    HA  IK
Sbjct: 72  TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v Length = 686

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +GV
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G + DF+ L    HA  IK
Sbjct: 72  TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN Hexasaccharide Inhibitor Length = 686

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +GV
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G + DF+ L    HA  IK
Sbjct: 72  TAIWISQPVENIYSIINDSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195 Length = 686

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +GV
Sbjct: 12  FSTDVIYQIFNDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G + DF+ L    HA  IK
Sbjct: 72  TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus Hb8 Length = 475

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 23/124 (18%)
Query: 37  WWQTSVFYHLYPRSF---------------------KDSNGDGVGDLKGMIEKLPEHLHD 75
           W++ + FY ++P  F                         G   G L G+ EKLP +L D
Sbjct: 3   WYEGAFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTLWGVAEKLP-YLLD 61
Query: 76  LGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPN 135
           LGV A++++P+F S  A+  Y   DY   +P+ G  +    L E  HA G++++LD V N
Sbjct: 62  LGVEAIYLNPVFAS-TANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGVRVILDGVFN 120
Query: 136 HTSN 139
           HT  
Sbjct: 121 HTGR 124

>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p Length = 683

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 60  GDLKGMIEKLPE-HLHDLGVGAVWI-SPI-----------FKSPMADFGYDISDYLSFEP 106
           GD +G+I K+ + +L  +GV A+WI  P+           F    +  GY   D+    P
Sbjct: 52  GDWQGIINKINDGYLTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNP 111
Query: 107 LFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE 142
            FG   DF+ L    HA  IK+++DF PNHTS   E
Sbjct: 112 YFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASE 147

>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl Transferase Mutant D135n Length = 686

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +GV
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G + DF+ L    HA  IK
Sbjct: 72  TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
           ++++F PNHTS
Sbjct: 132 VIINFAPNHTS 142

>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin Glucanotransferase Compexed With An Acarbose Length = 686

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +G+
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTGMGI 71
Query: 79  GAVWISPIFKSPMADFGYD-----------ISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS   ++  +   Y              D+    P +G ++DF+ L +  HA  IK
Sbjct: 72  TAIWISQPVENIYSVINYSGVNNTAYHGLWARDFKKTNPAYGTMQDFKNLIDTAHAHNIK 131
Query: 128 ILLDFVPNHTS 138
           +++DF PNHTS
Sbjct: 132 VIIDFAPNHTS 142

>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl Transferase Mutant D135a Length = 686

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 30/131 (22%)
Query: 38  WQTSVFYHLYPRSFKDSNG---------DGV---------GDLKGMIEKLPE-HLHDLGV 78
           + T V Y ++   F D N          DG          GD +G+I K+ + +L  +GV
Sbjct: 12  FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGV 71
Query: 79  GAVWIS-PIFK----------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            A+WIS P+            +  A  GY   D+    P +G + DF+ L    HA  IK
Sbjct: 72  TAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131
Query: 128 ILLDFVPNHTS 138
           +++ F PNHTS
Sbjct: 132 VIIAFAPNHTS 142

>pdb|2DH3|A Chain A, Crystal Structure Of Human Ed-4f2hc Length = 424

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 28  DVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIF 87
           ++P Q+   WW T   Y +     +   G G G+L G+  +L ++L  L V  + + PI 
Sbjct: 6   ELPAQK---WWHTGALYRI--GDLQAFQGHGAGNLAGLKGRL-DYLSSLKVKGLVLGPIH 59
Query: 88  KSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147
           K+   D     +D L  +P FG  +DF++L +      I+++LD  PN+   ++ WF   
Sbjct: 60  KNQKDDVAQ--TDLLQIDPNFGSKEDFDSLLQSAKKKSIRVILDLTPNYR-GENSWFSTQ 116
Query: 148 LANI 151
           +  +
Sbjct: 117 VDTV 120

>pdb|2DH2|A Chain A, Crystal Structure Of Human Ed-4f2hc Length = 424

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 28  DVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIF 87
           ++P Q+   WW T   Y +     +   G G G+L G+  +L ++L  L V  + + PI 
Sbjct: 6   ELPAQK---WWHTGALYRI--GDLQAFQGHGAGNLAGLKGRL-DYLSSLKVKGLVLGPIH 59
Query: 88  KSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147
           K+   D     +D L  +P FG  +DF++L +      I+++LD  PN+   ++ WF   
Sbjct: 60  KNQKDDVAQ--TDLLQIDPNFGSKEDFDSLLQSAKKKSIRVILDLTPNYR-GENSWFSTQ 116
Query: 148 LANI 151
           +  +
Sbjct: 117 VDTV 120

>pdb|1IV8|A Chain A, Crystal Structure Of Maltooligosyl Trehalose Synthase Length = 720

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 72  HLHDLGVGAVWISPIF-KSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130
           +  DLGV  +++SP+   SP ++ GYD+ D+       G  K++  L E  H +G+ I+ 
Sbjct: 25  YFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQ 84
Query: 131 DFVPNHTS-NQHEW 143
           D VPNH + N   W
Sbjct: 85  DIVPNHMAVNSLNW 98

>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase A Length = 478

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 21/122 (17%)
Query: 34  PLEWWQTSVFYHLYPRSFKDSNGDGV------------GDLKGMIEKLPEHLHDLGVGAV 81
           P +W   S+++ L  R F  ++G               G  +G+I+KL +++  +G  A+
Sbjct: 3   PADWRSQSIYFLLTDR-FARTDGSTTATCNTADQKYCGGTWQGIIDKL-DYIQGMGFTAI 60
Query: 82  WISPIFKSPMADF-------GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP 134
           WI+P+      D        GY  +D  S    +G   D + L   LH  G+ +++D V 
Sbjct: 61  WITPVTAQLPQDCAYGDAYTGYWQTDIYSLNENYGTADDLKALSSALHERGMYLMVDVVA 120
Query: 135 NH 136
           NH
Sbjct: 121 NH 122

>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase Amyb From Thermotoga Neapolitana Length = 422

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 42  VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPI----FKSPMADFG-- 95
           + Y  + R++    G     L    EK  E L  +G+  VW+ PI     +      G  
Sbjct: 7   IIYEAFARAYPGEKGKKFLSL----EKDLERLKGMGINTVWLMPIHPTGVEGRKGTLGSP 62
Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS------NQH-EWFKKSL 148
           Y I DY   + L G   DF+   +R H L + +L+D V NH +       +H EWF +  
Sbjct: 63  YAIRDYYEIDLLIGTKGDFKKFVKRAHELNMYVLMDMVLNHAAVDNVLVKKHPEWFLRDE 122
Query: 149 ANIPPYKC 156
              P  K 
Sbjct: 123 NGNPTRKV 130

>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of Aspergillus Niger Alpha-Amylase At 1.6 A Resolution Length = 478

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 21/122 (17%)
Query: 34  PLEWWQTSVFYHLYPRSFKDSNGDGV------------GDLKGMIEKLPEHLHDLGVGAV 81
           P +W   S+++ L  R F  ++G               G  +G+I+KL +++  +G  A+
Sbjct: 3   PADWRSQSIYFLLTDR-FARTDGSTTATCNTADQKYCGGTWQGIIDKL-DYIQGMGFTAI 60
Query: 82  WISPIFKS-PM------ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP 134
           WI+P+    P       A  GY   D  S    +G   D + L   LH  G+ +++D V 
Sbjct: 61  WITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVA 120
Query: 135 NH 136
           NH
Sbjct: 121 NH 122

>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase (E283q) Complexed With Maltoheptaose Length = 558

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-MADFGYDISDYLSFEPLFGDLKDFETLK 118
           G  +G+I KL ++L DLG+ A+ I PI + P   D+GYD     + +  +G  + F  L 
Sbjct: 116 GTFEGVIRKL-DYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLV 174
Query: 119 ERLHALGIKILLDFVPNHTSNQHEWFKK 146
           +  H  G+ ++LD V NH   +  +  K
Sbjct: 175 DEAHKKGLGVILDVVYNHVGPEGNYMVK 202

>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase (D252s) Length = 558

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-MADFGYDISDYLSFEPLFGDLKDFETLK 118
           G  +G+I KL ++L DLG+ A+ I PI + P   D+GYD     + +  +G  + F  L 
Sbjct: 116 GTFEGVIRKL-DYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLV 174
Query: 119 ERLHALGIKILLDFVPNHTSNQHEWFKK 146
           +  H  G+ ++LD V NH   +  +  K
Sbjct: 175 DEAHKKGLGVILDVVYNHVGPEGNYMVK 202

>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase (D252e) Length = 558

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-MADFGYDISDYLSFEPLFGDLKDFETLK 118
           G  +G+I KL ++L DLG+ A+ I PI + P   D+GYD     + +  +G  + F  L 
Sbjct: 116 GTFEGVIRKL-DYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLV 174
Query: 119 ERLHALGIKILLDFVPNHTSNQHEWFKK 146
           +  H  G+ ++LD V NH   +  +  K
Sbjct: 175 DEAHKKGLGVILDVVYNHVGPEGNYMVK 202

>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase From Sulfolobus Solfataricus Length = 558

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-MADFGYDISDYLSFEPLFGDLKDFETLK 118
           G  +G+I KL ++L DLG+ A+ I PI + P   D+GYD     + +  +G  + F  L 
Sbjct: 116 GTFEGVIRKL-DYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLV 174
Query: 119 ERLHALGIKILLDFVPNHTSNQHEWFKK 146
           +  H  G+ ++LD V NH   +  +  K
Sbjct: 175 DEAHKKGLGVILDVVYNHVGPEGNYMVK 202

>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Glycosyltrehalose Trehalohydrolase Length = 558

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-MADFGYDISDYLSFEPLFGDLKDFETLK 118
           G  +G+I KL ++L DLG+ A+ I PI + P   D+GYD     + +  +G  + F  L 
Sbjct: 116 GTFEGVIRKL-DYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLV 174
Query: 119 ERLHALGIKILLDFVPNHTSNQHEWFKK 146
           +  H  G+ ++LD V NH   +  +  K
Sbjct: 175 DEAHKKGLGVILDVVYNHVGPEGNYMVK 202

>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical Maltooligosyl Trehalose Synthase Length = 704

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 71  EHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKIL 129
           ++  +LGV  +++SP+ K+ P +  GYD+ DY +     G  +++  L +   + G+ I+
Sbjct: 22  DYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTINDELGGEEEYIRLIDEAKSKGLGII 81
Query: 130 LDFVPNHTSNQH 141
            D VPNH +  H
Sbjct: 82  QDIVPNHMAVHH 93

>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym: 1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase From Mycob Tuberculosis H37rv Length = 722

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 63  KGMIEKLPEHLHDLGVGAVWISPIFKSPMA-DFGYDISDYLSFEPLFGDLKDFETLKERL 121
           + +  +L +++ D G   V + P+ + P A  +GY ++ Y +    FG   DF  L + L
Sbjct: 263 RQLARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPTSRFGTPDDFRALVDAL 322
Query: 122 HALGIKILLDFVPNH 136
           H  GI +++D+VP H
Sbjct: 323 HQAGIGVIVDWVPAH 337

>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction Study At 2.1 Angstroms Resolution Of Two Enzymes From Aspergillus Length = 484

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF-------GYDISDYLSFEPLFGDLK 112
           G  +G+I+ L +++  +G  A+WISPI +    D        GY           FG   
Sbjct: 40  GSWQGIIDHL-DYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTAD 98
Query: 113 DFETLKERLHALGIKILLDFVPNH 136
           + ++L + LHA G+ +++D VP+H
Sbjct: 99  NLKSLSDALHARGMYLMVDVVPDH 122

>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant Length = 435

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 67  EKLPEHLHDLGVGAVWISPIFKSPMADF--GYDISDYL---------SFEPLFGDLKDFE 115
           +K+PE  +D G+ A+WI P  K     +  GYD  D+          + E  FG  ++  
Sbjct: 32  QKIPE-WYDAGISAIWIPPASKGMGGAYSMGYDPYDFFDLGEYDQKGTVETRFGSKQELV 90
Query: 116 TLKERLHALGIKILLDFVPNHTS 138
            +    HA G+K++ D V NH +
Sbjct: 91  NMINTAHAYGMKVIADIVINHRA 113

>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans Maltooligosyltrehalose Trehalohydrolase In Complex With Trehalose Length = 602

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 42  VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK-SPMADFGYDISD 100
           VFY ++  +F        G  +   EKLP +L +LGV A+ + P+        +GYD + 
Sbjct: 128 VFYEVHVGTFTPE-----GTYRAAAEKLP-YLKELGVTAIQVXPLAAFDGQRGWGYDGAA 181
Query: 101 YLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
           + +    +G  +D   L +  H LG+ + LD V NH
Sbjct: 182 FYAPYAPYGRPEDLXALVDAAHRLGLGVFLDVVYNH 217

>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative Alpha Amylase From Salmonella Typhimurium Length = 618

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 38  WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK-SPMADFGY 96
           W+ +V Y ++  +F        G  +  I KLP +L +LGV  + + P+ +      +GY
Sbjct: 134 WEQAVVYEMHTGTFTPE-----GTFRAAIAKLP-YLAELGVTVIEVMPVAQFGGERGWGY 187
Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
           D     +    +G   DF+   +  H  G+ ++LD V NH
Sbjct: 188 DGVLLYAPHSAYGTPDDFKAFIDAAHGYGLSVVLDIVLNH 227

>pdb|3EDE|A Chain A, Structural Base For Cyclodextrin Hydrolysis Length = 601

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 71  EHLHDLGVGAVWISPIFKSPMADF---GYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
           +++  LG   +W +P+ ++  A +   GY  +D+   +P +G  +DF  L       G+ 
Sbjct: 155 DYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMG 214
Query: 128 ILLDFVPNHTSNQHEWFK 145
           ++ D V +H    H W K
Sbjct: 215 LIQDVVLSHIGKHHWWMK 232

>pdb|3EDF|A Chain A, Structural Base For Cyclodextrin Hydrolysis Length = 601

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 71  EHLHDLGVGAVWISPIFKSPMADF---GYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
           +++  LG   +W +P+ ++  A +   GY  +D+   +P +G  +DF  L       G+ 
Sbjct: 155 DYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMG 214
Query: 128 ILLDFVPNHTSNQHEWFK 145
           ++ D V +H    H W K
Sbjct: 215 LIQDVVLSHIGKHHWWMK 232

>pdb|3EDD|A Chain A, Structural Base For Cyclodextrin Hydrolysis Length = 601

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 71  EHLHDLGVGAVWISPIFKSPMADF---GYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
           +++  LG   +W +P+ ++  A +   GY  +D+   +P +G  +DF  L       G+ 
Sbjct: 155 DYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMG 214
Query: 128 ILLDFVPNHTSNQHEWFK 145
           ++ D V +H    H W K
Sbjct: 215 LIQDVVLSHIGKHHWWMK 232

>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable Pyrocoocus Woesei Alpha-Amylase Length = 435

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 68  KLPEHLHDLGVGAVWISPIFKSPMADF--GYDISDYL---------SFEPLFGDLKDFET 116
           K+PE  ++ G+ A+W+ P  K     +  GYD  DY          + E  FG  ++   
Sbjct: 33  KIPE-WYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVR 91
Query: 117 LKERLHALGIKILLDFVPNHTSN 139
           L +  HA GIK++ D V NH + 
Sbjct: 92  LIQTAHAYGIKVIADVVINHRAG 114

>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans Maltooligosyltrehalose Trehalohydrolase Length = 602

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 42  VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK-SPMADFGYDISD 100
           VFY ++  +F        G  +   EKLP +L +LGV A+ + P+        +GYD + 
Sbjct: 128 VFYEVHVGTFTPE-----GTYRAAAEKLP-YLKELGVTAIQVMPLAAFDGQRGWGYDGAA 181
Query: 101 YLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
           + +    +G  +D   L +  H LG+ + LD V NH
Sbjct: 182 FYAPYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNH 217

>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L Length = 755

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 89  SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQ 140
           S  A FGY ++++ +     G  +D + L ++ H+LG+++L+D V +H SN 
Sbjct: 228 SYYASFGYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNN 279

>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L Length = 702

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 89  SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQ 140
           S  A FGY ++++ +     G  +D + L ++ H+LG+++L+D V +H SN 
Sbjct: 228 SYYASFGYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNN 279

>pdb|1H3G|A Chain A, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From Dna Sequence To Protein Structure Length = 601

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 71  EHLHDLGVGAVWISPIFKSPMADF---GYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
           +++  LG   +W +P+ ++  A +   GY  +D+   +P +G  +DF  L       G  
Sbjct: 155 DYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGXG 214
Query: 128 ILLDFVPNHTSNQHEWFK 145
           ++ D V +H    H W K
Sbjct: 215 LIQDVVLSHIGKHHWWXK 232

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
2zic_A	543	Dextran glucosidase; TIM barrel, (beta/alpha)8-bar	1e-65
2zic_A	543	Dextran glucosidase; TIM barrel, (beta/alpha)8-bar	8e-27
2ze0_A	555	Alpha-glucosidase; TIM barrel, glucoside hydrolase	2e-65
2ze0_A	555	Alpha-glucosidase; TIM barrel, glucoside hydrolase	1e-26
1m53_A	570	Isomaltulose synthase; klebsiella SP. LX3, sucrose	2e-65
1m53_A	570	Isomaltulose synthase; klebsiella SP. LX3, sucrose	1e-26
1zja_A	557	Trehalulose synthase; sucrose isomerase, alpha-amy	3e-65
1zja_A	557	Trehalulose synthase; sucrose isomerase, alpha-amy	1e-26
3aj7_A	589	Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro	5e-65
3aj7_A	589	Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro	2e-26
1uok_A	558	Oligo-1,6-glucosidase; sugar degradation, hydrolas	6e-65
1uok_A	558	Oligo-1,6-glucosidase; sugar degradation, hydrolas	2e-26
1lwj_A	441	4-alpha-glucanotransferase; alpha-amylase family,	4e-64
3k8k_A	669	Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, bet	2e-63
1wza_A	488	Alpha-amylase A; hydrolase, halophilic, thermophil	8e-62
2dh2_A	424	4F2 cell-surface antigen heavy chain; TIM-barrel,	1e-52
2dh2_A	424	4F2 cell-surface antigen heavy chain; TIM-barrel,	3e-18
3dhu_A	449	Alpha-amylase; structural genomics, hydrolase, gly	2e-44
2z1k_A	475	(NEO)pullulanase; hydrolase, structural genomics,	7e-44
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	1e-43
3czg_A	644	Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC;	2e-42
3ucq_A	655	Amylosucrase; thermostability, amylose synthesis,	2e-42
1g5a_A	628	Amylosucrase; glycosyltransferase, glycoside hydro	2e-41
2wc7_A	488	Alpha amylase, catalytic region; CD/PUL-hydrolyzin	9e-40
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	1e-37
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	3e-37
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	3e-37
1iv8_A	720	Maltooligosyl trehalose synthase; beta alpha barre	2e-36
3edf_A	601	FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c	5e-36
3edf_A	601	FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c	2e-13
3hje_A	704	704AA long hypothetical glycosyltransferase; treha	7e-36
2guy_A	478	Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase;	2e-34
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	2e-34
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	5e-13
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	1e-33
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	3e-12
1gjw_A	637	Maltodextrin glycosyltransferase; alpha-amylase, m	2e-33
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	3e-32
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	2e-12
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	6e-32
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	1e-12
2aaa_A	484	Alpha-amylase; glycosidase; 2.10A {Aspergillus nig	7e-31
2aaa_A	484	Alpha-amylase; glycosidase; 2.10A {Aspergillus nig	4e-10
3zss_A	695	Putative glucanohydrolase PEP1A; alpha-glucan bios	2e-30
3zss_A	695	Putative glucanohydrolase PEP1A; alpha-glucan bios	1e-04
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	1e-29
3bh4_A	483	Alpha-amylase; calcium, carbohydrate metabolism, g	4e-29
1r7a_A	504	Sucrose phosphorylase; beta-alpha-barrels, dimer,	3e-28
1r7a_A	504	Sucrose phosphorylase; beta-alpha-barrels, dimer,	8e-15
1hvx_A	515	Alpha-amylase; hydrolase, glycosyltransferase, the	2e-27
3bc9_A	599	AMYB, alpha amylase, catalytic region; acarbose, t	8e-27
1ua7_A	422	Alpha-amylase; beta-alpha-barrels, acarbose, greek	3e-26
1ht6_A	405	AMY1, alpha-amylase isozyme 1; barley, beta-alpha-	6e-26
1wpc_A	485	Glucan 1,4-alpha-maltohexaosidase; maltohexaose-pr	3e-24
1ud2_A	480	Amylase, alpha-amylase; calcium-free, alkaline, hy	6e-24
3aie_A	844	Glucosyltransferase-SI; beta-alpha-barrels; HET: M	1e-21
3aie_A	844	Glucosyltransferase-SI; beta-alpha-barrels; HET: M	6e-09
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	2e-19
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	8e-07
1mxg_A	435	Alpha amylase; hyperthermostable, family 13 glycos	7e-19
1g94_A	448	Alpha-amylase; beta-alpha-8-barrel, 3 domain struc	8e-14
1jae_A	471	Alpha-amylase; glycosidase, carbohydrate metabolis	1e-13
1hx0_A	496	Alpha amylase (PPA); inhibitor, carbohydrate, panc	2e-11
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	5e-08
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	1e-07
3ttq_A	1108	Dextransucrase; (beta/alpha)8 barrel, transferase;	1e-06
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	2e-06
3klk_A	1039	Glucansucrase; native form, open conformation, mul	5e-06
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	3e-05
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	7e-05
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	2e-04
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	3e-04
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	7e-04

>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* Length = 543

 Score =  210 bits (538), Expect = 1e-65
 Identities = 53/115 (46%), Positives = 79/115 (68%), Gaps = 1/115 (0%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
            WW  +  Y +YP+SF D+NGDG+GDLKG+  KL  +L  LGV A+W+SP++ SPM D G
Sbjct: 4   HWWHKATVYQIYPKSFMDTNGDGIGDLKGITSKLD-YLQKLGVMAIWLSPVYDSPMDDNG 62

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
           YDI++Y +   +FG++ D + L  +    GIKI++D V NHTS++H WF ++  +
Sbjct: 63  YDIANYEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHTSDEHAWFIEAREH 117

>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* Length = 543

 Score =  106 bits (267), Expect = 8e-27
 Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 22/78 (28%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
           L  LGV A+W+SP++ SPM D GYDI++Y  I                      KI++D 
Sbjct: 40  LQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRGIKIIMDL 99

Query: 201 VPNHTSNQHEWFKKSLAN 218
           V NHTS++H WF ++  +
Sbjct: 100 VVNHTSDEHAWFIEAREH 117

>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} Length = 555

 Score =  210 bits (538), Expect = 2e-65
 Identities = 61/115 (53%), Positives = 83/115 (72%), Gaps = 1/115 (0%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
            WW+  V Y +YPRSF D+NGDG+GDL+G+IEKL  +L +LGV  VWI PI++SP AD G
Sbjct: 4   TWWKEGVAYQIYPRSFMDANGDGIGDLRGIIEKLD-YLVELGVDIVWICPIYRSPNADNG 62

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
           YDISDY +    FG + DF+ L  + H  G+K++LD V NHTS++H WF +S ++
Sbjct: 63  YDISDYYAIMDEFGTMDDFDELLAQAHRRGLKVILDLVINHTSDEHPWFIESRSS 117

>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} Length = 555

 Score =  106 bits (266), Expect = 1e-26
 Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 22/78 (28%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
           L +LGV  VWI PI++SP AD GYDISDY  I                      K++LD 
Sbjct: 40  LVELGVDIVWICPIYRSPNADNGYDISDYYAIMDEFGTMDDFDELLAQAHRRGLKVILDL 99

Query: 201 VPNHTSNQHEWFKKSLAN 218
           V NHTS++H WF +S ++
Sbjct: 100 VINHTSDEHPWFIESRSS 117

>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 Length = 570

 Score =  210 bits (538), Expect = 2e-65
 Identities = 53/115 (46%), Positives = 82/115 (71%), Gaps = 1/115 (0%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
            WW+ +VFY +YPRSFKD+N DG+GD++G+IEKL  +L  LG+ A+WI+P + SP  D G
Sbjct: 18  AWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLD-YLKSLGIDAIWINPHYDSPNTDNG 76

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
           YDIS+Y      +G ++DF++L   +    +++++D V NHTS+QH WF +S ++
Sbjct: 77  YDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSD 131

>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 Length = 570

 Score =  106 bits (266), Expect = 1e-26
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 22/78 (28%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
           L  LG+ A+WI+P + SP  D GYDIS+Y +I                      ++++D 
Sbjct: 54  LKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDV 113

Query: 201 VPNHTSNQHEWFKKSLAN 218
           V NHTS+QH WF +S ++
Sbjct: 114 VINHTSDQHPWFIQSKSD 131

>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* Length = 557

 Score =  209 bits (535), Expect = 3e-65
 Identities = 59/114 (51%), Positives = 83/114 (72%), Gaps = 1/114 (0%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGY 96
           WW+++VFY +YPRSFKD+NGDG+GD KG+ EKL  +L  LG+ A+WI+P + SP  D GY
Sbjct: 6   WWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLD-YLKGLGIDAIWINPHYASPNTDNGY 64

Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
           DISDY      +G ++DF+ L   L   G+++++D V NH+S+QHEWFK S A+
Sbjct: 65  DISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRAS 118

>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* Length = 557

 Score =  106 bits (266), Expect = 1e-26
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 22/78 (28%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
           L  LG+ A+WI+P + SP  D GYDISDY  +                      ++++D 
Sbjct: 41  LKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDV 100

Query: 201 VPNHTSNQHEWFKKSLAN 218
           V NH+S+QHEWFK S A+
Sbjct: 101 VINHSSDQHEWFKSSRAS 118

>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* Length = 589

 Score =  210 bits (536), Expect = 5e-65
 Identities = 55/115 (47%), Positives = 78/115 (67%), Gaps = 1/115 (0%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
           +WW+ + FY +YP SFKDSN DG GD+KG+  KL  ++ +LG  A+WISP + SP  D G
Sbjct: 13  KWWKEATFYQIYPASFKDSNDDGWGDMKGIASKLE-YIKELGADAIWISPFYDSPQDDMG 71

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
           YDI++Y    P +G  +D   L E+ H LG+K + D V NH S++HEWFK+S ++
Sbjct: 72  YDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFITDLVINHCSSEHEWFKESRSS 126

>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* Length = 589

 Score =  105 bits (264), Expect = 2e-26
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 22/78 (28%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
           + +LG  A+WISP + SP  D GYDI++Y ++                      K + D 
Sbjct: 49  IKELGADAIWISPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFITDL 108

Query: 201 VPNHTSNQHEWFKKSLAN 218
           V NH S++HEWFK+S ++
Sbjct: 109 VINHCSSEHEWFKESRSS 126

>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 Length = 558

 Score =  209 bits (534), Expect = 6e-65
 Identities = 55/115 (47%), Positives = 82/115 (71%), Gaps = 1/115 (0%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
           +WW+ SV Y +YPRSF DSNGDG+GDL+G+I KL  +L +LG+  +W+SP+++SP  D G
Sbjct: 4   QWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLD-YLKELGIDVIWLSPVYESPNDDNG 62

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
           YDISDY      FG ++D++ L   +H   +K+++D V NHTS++H WF +S  +
Sbjct: 63  YDISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKS 117

>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 Length = 558

 Score =  105 bits (264), Expect = 2e-26
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 22/78 (28%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KILLDF 200
           L +LG+  +W+SP+++SP  D GYDISDY +I                      K+++D 
Sbjct: 40  LKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDL 99

Query: 201 VPNHTSNQHEWFKKSLAN 218
           V NHTS++H WF +S  +
Sbjct: 100 VVNHTSDEHNWFIESRKS 117

>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A* Length = 441

 Score =  204 bits (521), Expect = 4e-64
 Identities = 45/113 (39%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 42  VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDY 101
           + Y +Y RSF+D N DGVGD +G+   +  +L +LG+  VW+ P+F S  +  GYD+ D+
Sbjct: 2   IGYQIYVRSFRDGNLDGVGDFRGLKNAVS-YLKELGIDFVWLMPVFSSI-SFHGYDVVDF 59

Query: 102 LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
            SF+  +G  ++F+ + E  H  GIK++LD   +HT   H WF+K+L   P Y
Sbjct: 60  YSFKAEYGSEREFKEMIEAFHDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHY 112

>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* Length = 669

 Score =  207 bits (529), Expect = 2e-63
 Identities = 62/253 (24%), Positives = 87/253 (34%), Gaps = 72/253 (28%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
           E  +  + Y L   SF DS+GDG GDL G+ +KL  +L+ LGV A+W+SPI     +  G
Sbjct: 33  ETKRADISYQLLLYSFADSDGDGYGDLNGVTQKLD-YLNQLGVKALWLSPIHPCM-SYHG 90

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN----- 150
           YD++DY    P  G   DF+ L    H  GIKI LD+V NHT   H WF ++ ++     
Sbjct: 91  YDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKIYLDYVMNHTGTAHPWFTEASSSSESPY 150

Query: 151 ------------------IPPYKCAS-----------------LLARLHDLGVGAVWISP 175
                             I                         +  L    +       
Sbjct: 151 RNYYSFSEDPKTDIAAGKIAMITQEGAAGYNAAEWFQVSDETAAVKGLLKFTLDWSNAPS 210

Query: 176 I---------FKSPMADFGYDISDYLR----------------IKILLDFVPNH-----T 205
                           D G D + YL                  ++ +DF         T
Sbjct: 211 PILVVSTGTKADEDNPDTGTDNAKYLYYGEDICKKFYDKGNNIYELTVDFESTWGLLIRT 270

Query: 206 SNQHEWFKKSLAN 218
           SN   W   +   
Sbjct: 271 SNASFWPSGTKYG 283

>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1 Length = 488

 Score =  199 bits (508), Expect = 8e-62
 Identities = 55/121 (45%), Positives = 76/121 (62%), Gaps = 8/121 (6%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLP-------EHLHDLGVGAVWISPIFKS 89
           + +   +Y ++ RSF DS+GDG+GDLKG+IEKL        E + DLGV  +W+ PIFKS
Sbjct: 1   FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKS 60

Query: 90  PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLA 149
           P    GYD++DY    P +G L+DF  L E  H  GIK+++D   NHTS +H WF K+  
Sbjct: 61  PS-YHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASR 119

Query: 150 N 150
           +
Sbjct: 120 D 120

>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A Length = 424

 Score =  174 bits (442), Expect = 1e-52
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
           +WW T   Y +     +   G G G+L G+  +L  +L  L V  + + PI K+   D  
Sbjct: 11  KWWHTGALYRI--GDLQAFQGHGAGNLAGLKGRLD-YLSSLKVKGLVLGPIHKNQKDDVA 67

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPP 153
              +D L  +P FG  +DF++L +      I+++LD  PN+   ++ WF   +  +  
Sbjct: 68  Q--TDLLQIDPNFGSKEDFDSLLQSAKKKSIRVILDLTPNYRG-ENSWFSTQVDTVAT 122

>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A Length = 424

 Score = 81.7 bits (202), Expect = 3e-18
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 25/81 (30%)

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDY----------------------LRIKILLDF 200
           L  L V  + + PI K+   D     +D                         I+++LD 
Sbjct: 45  LSSLKVKGLVLGPIHKNQKDDVAQ--TDLLQIDPNFGSKEDFDSLLQSAKKKSIRVILDL 102

Query: 201 VPNHTSNQHEWFKKSLANIPP 221
            PN+   ++ WF   +  +  
Sbjct: 103 TPNYRG-ENSWFSTQVDTVAT 122

>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} Length = 449

 Score =  152 bits (387), Expect = 2e-44
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 12/124 (9%)

Query: 29  VPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK 88
           + +++     +  + Y ++ R++ ++     G+  G+   L   + DLG   +W+ PI  
Sbjct: 1   MSLRDTQTQLRNEMIYSVFVRNYSEA-----GNFAGVTADLQ-RIKDLGTDILWLLPINP 54

Query: 89  SPMADF------GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE 142
               +        Y I DY    P +G L DF+ L +R H LG+K++LD V NHTS    
Sbjct: 55  IGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHELGMKVMLDIVYNHTSPDSV 114

Query: 143 WFKK 146
              +
Sbjct: 115 LATE 118

>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} Length = 475

 Score =  152 bits (385), Expect = 7e-44
 Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 25/142 (17%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDG---------------------VGDLKGMIEKLPEHLHD 75
           W++ + FY ++P  F  +   G                      G L G+ EKLP +L D
Sbjct: 3   WYEGAFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTLWGVAEKLP-YLLD 61

Query: 76  LGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPN 135
           LGV A++++P+F S  A+  Y   DY   +P+ G  +    L E  HA G++++LD V N
Sbjct: 62  LGVEAIYLNPVFAST-ANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGVRVILDGVFN 120

Query: 136 HTSNQHEWFKKSLANIP--PYK 155
           HT      F+  + N    PY+
Sbjct: 121 HTGRGFFAFQHLMENGEQSPYR 142

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696

 Score =  154 bits (391), Expect = 1e-43
 Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 21/139 (15%)

Query: 36  EWWQTSVFYHLYPRSFKDSN-----------------GDGVGDLKGMIEKLPEHLHDLGV 78
            W+  +V+Y ++  SF + +                 G   GDL G+++ +  HL DLGV
Sbjct: 221 RWYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDLAGIMKHID-HLEDLGV 279

Query: 79  GAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS 138
             ++++PIF S  +   YD  DY S +   G ++DFE L + LH+  IKI+LD   +HT+
Sbjct: 280 ETIYLTPIFSST-SYHRYDTIDYKSIDKYLGTMEDFEKLVQVLHSRKIKIVLDITMHHTN 338

Query: 139 NQHEWFKKSLANIP--PYK 155
             +E F K+L      PY 
Sbjct: 339 PCNELFVKALREGENSPYW 357

>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A Length = 644

 Score =  150 bits (380), Expect = 2e-42
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 8/121 (6%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA--DF 94
           W+            +        G L+G+ E++P +L +LGV  + + P  ++     D 
Sbjct: 85  WFGQPHM-----LGYSAYADRFAGTLQGVAERVP-YLQELGVRYLHLLPFLRARAGDNDG 138

Query: 95  GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
           G+ +SDY   EP  G   D   L  RL   GI +  DFV NHT++ H W + + A    Y
Sbjct: 139 GFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARY 198

Query: 155 K 155
            
Sbjct: 199 L 199

>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* Length = 655

 Score =  150 bits (380), Expect = 2e-42
 Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 11/129 (8%)

Query: 30  PIQEPLEWWQ-TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK 88
            +  P    +   V Y  Y   F        G LKG+ E+L  +L  LGV  + + P+ +
Sbjct: 84  RLLRPDWLQRPEMVGYVAYTDRF-------AGTLKGVEERLD-YLEGLGVKYLHLMPLLR 135

Query: 89  --SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKK 146
                 D GY + DY +  P  G + D   L   L   GI ++LD V NH + +H W +K
Sbjct: 136 PREGENDGGYAVQDYRAVRPDLGTMDDLSALARALRGRGISLVLDLVLNHVAREHAWAQK 195

Query: 147 SLANIPPYK 155
           + A  P Y+
Sbjct: 196 ARAGDPKYR 204

>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* Length = 628

 Score =  148 bits (374), Expect = 2e-41
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 10/121 (8%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADF 94
                V    Y   F        GDLKG+ +K+P +  +LG+  + + P+FK P   +D 
Sbjct: 94  LSNKQVGGVCYVDLF-------AGDLKGLKDKIP-YFQELGLTYLHLMPLFKCPEGKSDG 145

Query: 95  GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
           GY +S Y    P  G + D   +   LH  GI  ++DF+ NHTSN+HEW ++  A  P +
Sbjct: 146 GYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLF 205

Query: 155 K 155
            
Sbjct: 206 D 206

>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A Length = 488

 Score =  141 bits (357), Expect = 9e-40
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 26/144 (18%)

Query: 36  EWWQTSVFYHLYPRSFKDSN----------------------GDGVGDLKGMIEKLPEHL 73
           +W + +VFY ++P  F  S                       G   GDL G++E L  ++
Sbjct: 7   DWVKHAVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMEDLD-YI 65

Query: 74  HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
            +LG+ A++ +PIF+S  ++  Y   DY   +P+ G  + F+ L +  H   IK++LD V
Sbjct: 66  QNLGINAIYFTPIFQSA-SNHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKVVLDGV 124

Query: 134 PNHTSNQHEWFKKSLANIP--PYK 155
            NH+S    +F   L N P  P+ 
Sbjct: 125 FNHSSRGFFFFHDVLENGPHSPWV 148

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A Length = 585

 Score =  136 bits (345), Expect = 1e-37
 Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 24/155 (15%)

Query: 23  FKEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDG--------------------VGDL 62
           +       +    EW + +V Y ++P  F + +                        GDL
Sbjct: 113 YAYIHRSEVFTTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDL 172

Query: 63  KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLH 122
           KG+I++LP +L +LGV A++ +PIF SP +   YD +DYL+ +P FGDL  F  L +  H
Sbjct: 173 KGVIDRLP-YLEELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAH 230

Query: 123 ALGIKILLDFVPNHTSNQHEWFKKSLANIP--PYK 155
             GIKI+LD V NH  +Q   F+  L       YK
Sbjct: 231 RRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYK 265

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Length = 583

 Score =  135 bits (343), Expect = 3e-37
 Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 23/154 (14%)

Query: 23  FKEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGV-------------------GDLK 63
           +     V + +P  W + ++FY ++P  F + +                       GDL+
Sbjct: 113 YPFINPVDVFQPPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQ 172

Query: 64  GMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHA 123
           G+I+ L  HL  LGV AV+ +P+FK+   +  YD  DY   +P FGD    + L +  H 
Sbjct: 173 GVIDHLD-HLSKLGVNAVYFTPLFKAT-TNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHE 230

Query: 124 LGIKILLDFVPNHTSNQHEWFKKSLANIP--PYK 155
            GI++LLD V NH+      F   L N     YK
Sbjct: 231 RGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYK 264

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* Length = 588

 Score =  135 bits (342), Expect = 3e-37
 Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 23/150 (15%)

Query: 27  VDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGV-------------------GDLKGMIE 67
             V + E  +W + +V+Y ++P  F + N                       GDL+G+I+
Sbjct: 121 HRVDLFEAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIID 180

Query: 68  KLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIK 127
            L  +L DLG+  ++++PIF+SP ++  YD +DY   +P FGD +  +TL +R H  GI+
Sbjct: 181 HLD-YLVDLGITGIYLTPIFRSP-SNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIR 238

Query: 128 ILLDFVPNHTSNQHEWFKKSLANIP--PYK 155
           ++LD V NH   +   F+    N     YK
Sbjct: 239 VMLDAVFNHCGYEFAPFQDVWKNGESSKYK 268

>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 Length = 720

 Score =  134 bits (338), Expect = 2e-36
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 48  PRS---FKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK-SPMADFGYDISDYLS 103
             +    + +      +   +I+ L  +  DLGV  +++SP+   SP ++ GYD+ D+  
Sbjct: 2   ISATYRLQLNKNF---NFGDVIDNLW-YFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSR 57

Query: 104 FEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS 147
                G  K++  L E  H +G+ I+ D VPNH +     ++  
Sbjct: 58  INDELGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVNSLNWRLM 101

>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A Length = 601

 Score =  132 bits (333), Expect = 5e-36
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 23/135 (17%)

Query: 33  EPLEWWQTSVFYHLYPRSFKDSN-------------------GDGVGDLKGMIEKLPEHL 73
           +   +      Y + P  F + +                   G   GD++G I+ L  ++
Sbjct: 99  QRQGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLD-YI 157

Query: 74  HDLGVGAVWISPIFKSPMADF---GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL 130
             LG   +W +P+ ++  A +   GY  +D+   +P +G  +DF  L       G+ ++ 
Sbjct: 158 AGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQ 217

Query: 131 DFVPNHTSNQHEWFK 145
           D V +H    H W K
Sbjct: 218 DVVLSHIGKHHWWMK 232

>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A Length = 601

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 25/76 (32%)

Query: 163 LHDLGVGAVWISPIFKSPMADF---GYDISDYLR----------------------IKIL 197
           +  LG   +W +P+ ++  A +   GY  +D+ R                      + ++
Sbjct: 157 IAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLI 216

Query: 198 LDFVPNHTSNQHEWFK 213
            D V +H    H W K
Sbjct: 217 QDVVLSHIGKHHWWMK 232

>3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str} Length = 704

 Score =  132 bits (334), Expect = 7e-36
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)

Query: 41  SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDIS 99
              Y L P  F +           +  +L  +  +LGV  +++SP+ K+ P +  GYD+ 
Sbjct: 4   LSTYRLQPMKFSE-----------IRNRLD-YFVELGVTHLYLSPVLKARPGSTHGYDVV 51

Query: 100 DYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKK 146
           DY +     G  +++  L +   + G+ I+ D VPNH +  H  ++ 
Sbjct: 52  DYNTINDELGGEEEYIRLIDEAKSKGLGIIQDIVPNHMAVHHTNWRL 98

>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A Length = 478

 Score =  127 bits (320), Expect = 2e-34
 Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 20/142 (14%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDG------------VGDLKGMIEKLPEHLHDLGVGAVWI 83
             W++   Y L    F  ++G               G  +G+I+KL  ++  +G  A+WI
Sbjct: 4   ADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLD-YIQGMGFTAIWI 62

Query: 84  SPIFKSPMADF-------GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
           +P+               GY   D  S    +G   D + L   LH  G+ +++D V NH
Sbjct: 63  TPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANH 122

Query: 137 TSNQHEWFKKSLANIPPYKCAS 158
                       +   P+    
Sbjct: 123 MGYDGAGSSVDYSVFKPFSSQD 144

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Length = 680

 Score =  128 bits (323), Expect = 2e-34
 Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 29/149 (19%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGV------------------GDLKGMIEKLPE-HLHDL 76
             + + V Y +    F D N                      GD +G+I K+ + +L D+
Sbjct: 7   VNFTSDVVYQIVVDRFVDGNTSNNPSGALFSSGCTNLRKYCGGDWQGIINKINDGYLTDM 66

Query: 77  GVGAVWISPIFKSPMADF----------GYDISDYLSFEPLFGDLKDFETLKERLHALGI 126
           GV A+WIS   ++  +            GY   D+    P FG L DF+ L +  HA GI
Sbjct: 67  GVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAAHAKGI 126

Query: 127 KILLDFVPNHTSNQHEWFKKSLANIPPYK 155
           K+++DF PNHTS   E     + N   Y 
Sbjct: 127 KVIIDFAPNHTSPASETNPSYMENGRLYD 155

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Length = 680

 Score = 66.4 bits (162), Expect = 5e-13
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 32/92 (34%)

Query: 163 LHDLGVGAVWISPIFKSPMADF----------GYDISDYLR------------------- 193
           L D+GV A+WIS   ++  +            GY   D+ +                   
Sbjct: 63  LTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAAH 122

Query: 194 ---IKILLDFVPNHTSNQHEWFKKSLANIPPY 222
              IK+++DF PNHTS   E     + N   Y
Sbjct: 123 AKGIKVIIDFAPNHTSPASETNPSYMENGRLY 154

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Length = 686

 Score =  126 bits (318), Expect = 1e-33
 Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 35/160 (21%)

Query: 28  DVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGV--------------------GDLKGMIE 67
           D  +    + + T V Y ++   F  S+G+                      GD +G+I 
Sbjct: 3   DTSVSNK-QNFSTDVIYQIFTDRF--SDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIIN 59

Query: 68  KLPE-HLHDLGVGAVWISPIFKSPMADF-----------GYDISDYLSFEPLFGDLKDFE 115
           K+ + +L  +GV A+WIS   ++  +             GY   D+    P +G + DF+
Sbjct: 60  KINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQ 119

Query: 116 TLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
            L    HA  IK+++DF PNHTS           N   Y 
Sbjct: 120 NLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYD 159

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Length = 686

 Score = 64.5 bits (157), Expect = 3e-12
 Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 33/93 (35%)

Query: 163 LHDLGVGAVWISPIFKSPMADF-----------GYDISDYLR------------------ 193
           L  +GV A+WIS   ++  +             GY   D+ +                  
Sbjct: 66  LTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAA 125

Query: 194 ----IKILLDFVPNHTSNQHEWFKKSLANIPPY 222
               IK+++DF PNHTS           N   Y
Sbjct: 126 HAKNIKVIIDFAPNHTSPASSDQPSFAENGRLY 158

>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* Length = 637

 Score =  125 bits (314), Expect = 2e-33
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 29/151 (19%)

Query: 24  KEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGV--------------GDLKGMIEKL 69
           +    +  ++  +W + SV Y   PR+    N  G               G    M+  L
Sbjct: 67  QPLSFLKGEKTPDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLL 126

Query: 70  PEHLHDLGVGAVWISPIF------KSPMADFGYDISDYLS--------FEPLFGDLKDFE 115
           P  +  LG  A+++ P+       K   A   Y + + +             F   ++F+
Sbjct: 127 P-FVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFK 185

Query: 116 TLKERLHALGIKILLDFVPNHTSNQHEWFKK 146
              E  H LGI+++LDF+P   +   +  ++
Sbjct: 186 AFVEACHILGIRVILDFIPRTAARDSDLIRE 216

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Length = 683

 Score =  122 bits (307), Expect = 3e-32
 Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 35/159 (22%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGV--------------------GDLKGMIEKLPE-HLH 74
             + T V Y +    F   +G+                      GD +G+I K+ + +L 
Sbjct: 10  VNYSTDVIYQIVTDRF--VDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLT 67

Query: 75  DLGVGAVWISPIFKSPMADF------------GYDISDYLSFEPLFGDLKDFETLKERLH 122
            +GV A+WI    ++  A              GY   D+    P FG   DF+ L    H
Sbjct: 68  GMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAH 127

Query: 123 ALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLA 161
           A  IK+++DF PNHTS   E       N   Y   +LL 
Sbjct: 128 AHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLG 166

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Length = 683

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 34/94 (36%)

Query: 163 LHDLGVGAVWISPIFKSPMADF------------GYDISDYLR----------------- 193
           L  +GV A+WI    ++  A              GY   D+ R                 
Sbjct: 66  LTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINT 125

Query: 194 -----IKILLDFVPNHTSNQHEWFKKSLANIPPY 222
                IK+++DF PNHTS   E       N   Y
Sbjct: 126 AHAHNIKVIIDFAPNHTSPASETDPTYAENGRLY 159

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Length = 686

 Score =  121 bits (305), Expect = 6e-32
 Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 34/151 (22%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGV-----------------------GDLKGMIEKLPEH 72
              +  V Y +    F   +GD                         GDL+G+ +KLP +
Sbjct: 4   ASVKGDVIYQIIIDRF--YDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLP-Y 60

Query: 73  LHDLGVGAVWISPIFKSPMADF--------GYDISDYLSFEPLFGDLKDFETLKERLHAL 124
           L  LGV  +W+SP+  +             GY   D+   E  FG+   F+TL    H  
Sbjct: 61  LKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQN 120

Query: 125 GIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
           GIK+++DFVPNH++               Y 
Sbjct: 121 GIKVIVDFVPNHSTPFKANDSTFAEGGALYN 151

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Length = 686

 Score = 65.6 bits (160), Expect = 1e-12
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 30/90 (33%)

Query: 163 LHDLGVGAVWISPIFKSPMADF--------GYDISDYLR--------------------- 193
           L  LGV  +W+SP+  +             GY   D+ +                     
Sbjct: 61  LKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQN 120

Query: 194 -IKILLDFVPNHTSNQHEWFKKSLANIPPY 222
            IK+++DFVPNH++               Y
Sbjct: 121 GIKVIVDFVPNHSTPFKANDSTFAEGGALY 150

>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 Length = 484

 Score =  117 bits (294), Expect = 7e-31
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 20/140 (14%)

Query: 38  WQTSVFYHLYPRSFKDSNGDG------------VGDLKGMIEKLPEHLHDLGVGAVWISP 85
           W+T   Y L    F  ++                G  +G+I+ L  ++  +G  A+WISP
Sbjct: 6   WRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLD-YIEGMGFTAIWISP 64

Query: 86  IFKSPMADF-------GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS 138
           I +    D        GY           FG   + ++L + LHA G+ +++D VP+H  
Sbjct: 65  ITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHMG 124

Query: 139 NQHEWFKKSLANIPPYKCAS 158
                     +   P+  +S
Sbjct: 125 YAGNGNDVDYSVFDPFDSSS 144

>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 Length = 484

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 29/92 (31%)

Query: 160 LARLHDLGVGAVWISPIFKSPMADF-------GYDISDYLRI------------------ 194
           L  +  +G  A+WISPI +    D        GY       +                  
Sbjct: 49  LDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALH 108

Query: 195 ----KILLDFVPNHTSNQHEWFKKSLANIPPY 222
                +++D VP+H            +   P+
Sbjct: 109 ARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPF 140

>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* Length = 695

 Score =  116 bits (293), Expect = 2e-30
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 23/139 (16%)

Query: 28  DVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIF 87
            +P+    E      +Y  +PRS   +     G  +    +LP  +  +G   V++ PI 
Sbjct: 219 PLPLLVERERALYGAWYEFFPRSE-GTPHTPHGTFRTAARRLP-AIAAMGFDVVYLPPIH 276

Query: 88  KS----------PMADFGYDI----------SDYLSFEPLFGDLKDFETLKERLHALGIK 127
                        ++  G D+            + S  P  G L DF+        LG++
Sbjct: 277 PIGTTHRKGRNNTLSATGDDVGVPWAIGSPEGGHDSIHPALGTLDDFDHFVTEAGKLGLE 336

Query: 128 ILLDFVPNHTSNQHEWFKK 146
           I LDF     S  H W  K
Sbjct: 337 IALDFALQC-SPDHPWVHK 354

>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* Length = 695

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 43/101 (42%)

Query: 156 CASLLARLHDLGVGAVWISPIFKS----------PMADFGYDISDY-------------- 191
            A  L  +  +G   V++ PI              ++  G D+                 
Sbjct: 255 AARRLPAIAAMGFDVVYLPPIHPIGTTHRKGRNNTLSATGDDVGVPWAIGSPEGGHDSIH 314

Query: 192 ------------------LRIKILLDFVPNHTSNQHEWFKK 214
                             L ++I LDF     S  H W  K
Sbjct: 315 PALGTLDDFDHFVTEAGKLGLEIALDFALQC-SPDHPWVHK 354

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A Length = 637

 Score =  114 bits (288), Expect = 1e-29
 Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 43/152 (28%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGV------------------------------------ 59
           +W +  V Y ++P  F + +                                        
Sbjct: 128 DWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFG 187

Query: 60  GDLKGMIEKLPEHLHD-LGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLK 118
           GDL G+ +KL  ++   LG   ++++PIFK+P  +  YD  DY++ +P FGD    +TL 
Sbjct: 188 GDLAGIDQKLG-YIKKTLGANILYLNPIFKAP-TNHKYDTQDYMAVDPAFGDNSTLQTLI 245

Query: 119 ERLHALG----IKILLDFVPNHTSNQHEWFKK 146
             +H+        ++LD V NHT + H WF K
Sbjct: 246 NDIHSTANGPKGYLILDGVFNHTGDSHPWFDK 277

>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A Length = 483

 Score =  112 bits (281), Expect = 4e-29
 Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 12/146 (8%)

Query: 53  DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDY---------L 102
            +  DG    K +      HL D+G+ AVWI P +K    +D GY   D           
Sbjct: 12  YTPNDG-QHWKRLQNDAE-HLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKG 69

Query: 103 SFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLAR 162
           +    +G   + +     LH+  +++  D V NH +        +   + P       + 
Sbjct: 70  TVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSE 129

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDI 188
            + +     +  P   +  +DF +  
Sbjct: 130 EYQIKAWTDFRFPGRGNTYSDFKWHW 155

>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A* Length = 504

 Score =  109 bits (275), Expect = 3e-28
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 9/108 (8%)

Query: 49  RSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK-SPMADFGYDISDYLSFEPL 107
            ++ D  GDG   +K M + L     D     V I P F     AD G+D  D+   +  
Sbjct: 8   ITYADRLGDG--TIKSMTDILRTRF-DGVYDGVHILPFFTPFDGADAGFDPIDHTKVDER 64

Query: 108 FGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
            G   D   L +        I++D + NH S + + F+  LA     +
Sbjct: 65  LGSWDDVAELSK-----THNIMVDAIVNHMSWESKQFQDVLAKGEESE 107

>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A* Length = 504

 Score = 71.8 bits (176), Expect = 8e-15
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 18/82 (21%)

Query: 158 SLLARLHDLGVGAVWISPIFK-SPMADFGYDISDYLRI-----------------KILLD 199
            +L    D     V I P F     AD G+D  D+ ++                  I++D
Sbjct: 24  DILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDERLGSWDDVAELSKTHNIMVD 83

Query: 200 FVPNHTSNQHEWFKKSLANIPP 221
            + NH S + + F+  LA    
Sbjct: 84  AIVNHMSWESKQFQDVLAKGEE 105

>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 Length = 515

 Score =  107 bits (269), Expect = 2e-27
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 13/114 (11%)

Query: 49  RSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDY------ 101
           + F+    D       +  +   +L  LG+ A+W+ P +K    +D GY + D       
Sbjct: 10  QYFEWYLPDDGTLWTKVANEAN-NLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEF 68

Query: 102 ---LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT--SNQHEWFKKSLAN 150
               +    +G    +    +  HA G+++  D V +H   ++  EW      N
Sbjct: 69  NQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVN 122

>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A Length = 599

 Score =  106 bits (266), Expect = 8e-27
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 14/128 (10%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK--SPMAD 93
                + ++ +    +   + +       + E+ PE L + G  AVW+ P  K  + + D
Sbjct: 123 HTILQAFYWEMNTGEYATEHPEEANLWNLLAERAPE-LAEAGFTAVWLPPANKGMAGIHD 181

Query: 94  FGYDISDY---------LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS--NQHE 142
            GY   D           +    +G   + E   + LH   IK+  D V NH    +  E
Sbjct: 182 VGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAE 241

Query: 143 WFKKSLAN 150
                  +
Sbjct: 242 TVLLDENS 249

>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A Length = 422

 Score =  103 bits (259), Expect = 3e-26
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 11/105 (10%)

Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF----------GYDISDYLSFEPLFG 109
                +   + + +HD G  A+  SPI +    +            Y  + Y       G
Sbjct: 14  WSFNTLKHNM-KDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLG 72

Query: 110 DLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
             ++F+ +       GIK+++D V NHT+  +      + +IP +
Sbjct: 73  TEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPNW 117

>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* Length = 405

 Score =  102 bits (257), Expect = 6e-26
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 44  YHLYPRSFK-DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYL 102
           + +  + F  +S     G    M+ K+   +   GV  VW+ P   S  ++ GY      
Sbjct: 1   HQVLFQGFNWESWKQSGGWYNMMMGKVD-DIAAAGVTHVWLPPPSHSV-SNEGYMPGRLY 58

Query: 103 SF-EPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK 145
                 +G+  + ++L   LH  G++ + D V NH    ++  +
Sbjct: 59  DIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSR 102

>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* Length = 485

 Score = 98.8 bits (246), Expect = 3e-24
 Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 17/174 (9%)

Query: 53  DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDY---------L 102
               DG      +      +L   G+ AVWI P +K     D GY   D           
Sbjct: 16  YLPNDG-NHWNRLNSDAS-NLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKG 73

Query: 103 SFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLAR 162
           +    +G     +     L   GI++  D V NH              + P      +  
Sbjct: 74  TVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTG 133

Query: 163 LHDLGVGAVWISPIFKSPMADFGY-----DISDYLRIKILLDFVPNHTSNQHEW 211
            + +     +  P   +  + F +     D  D+ + + L + +     +   W
Sbjct: 134 EYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAW 187

>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A Length = 480

 Score = 98.0 bits (244), Expect = 6e-24
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 12/145 (8%)

Query: 53  DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDY---------L 102
               DG      + +     L D G+ A+WI P +K    AD GY   D           
Sbjct: 14  HLENDG-QHWNRLHDDAA-ALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKG 71

Query: 103 SFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLAR 162
           +    +G     E     L +  I +  D V NH              + P      ++ 
Sbjct: 72  TVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISG 131

Query: 163 LHDLGVGAVWISPIFKSPMADFGYD 187
            + +     +      +  +DF + 
Sbjct: 132 AYTIDAWTGFDFSGRNNAYSDFKWR 156

>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* Length = 844

 Score = 92.2 bits (228), Expect = 1e-21
 Identities = 19/121 (15%), Positives = 42/121 (34%), Gaps = 19/121 (15%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP------ 90
            ++    +  +    ++           + + +     + GV    ++P + S       
Sbjct: 613 MFEGFSNFQAFATKKEEYTN------VVIAKNVD-KFAEWGVTDFEMAPQYVSSTDGSFL 665

Query: 91  --MADFGYDISDY----LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144
             +   GY  +D     +S    +G   D     + LH+ GIK++ D+VP+      E  
Sbjct: 666 DSVIQNGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSKGIKVMADWVPDQMYALPEKE 725

Query: 145 K 145
            
Sbjct: 726 V 726

>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* Length = 844

 Score = 54.4 bits (130), Expect = 6e-09
 Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 34/91 (37%)

Query: 157 ASLLARLHDLGVGAVWISPIFKSP--------MADFGYDISDYLR--------------- 193
           A  + +  + GV    ++P + S         +   GY  +D                  
Sbjct: 636 AKNVDKFAEWGVTDFEMAPQYVSSTDGSFLDSVIQNGYAFTDRYDLGISKPNKYGTADDL 695

Query: 194 -----------IKILLDFVPNHTSNQHEWFK 213
                      IK++ D+VP+      E   
Sbjct: 696 VKAIKALHSKGIKVMADWVPDQMYALPEKEV 726

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* Length = 527

 Score = 85.1 bits (210), Expect = 2e-19
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 10/102 (9%)

Query: 53  DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF---------GYDISDYLS 103
           +   +   D   ++ +    +   G  A+W+   ++   +           GY   D+ +
Sbjct: 26  NVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDF-N 84

Query: 104 FEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK 145
               +G           L   G+K+L D VPNH +  +   +
Sbjct: 85  KNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKE 126

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* Length = 527

 Score = 48.1 bits (114), Expect = 8e-07
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 30/84 (35%)

Query: 160 LARLHDLGVGAVWISPIFKSPMADF---------GYDISDY-----------LR------ 193
            A +   G  A+W+   ++   +           GY   D+           LR      
Sbjct: 43  AATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASAL 102

Query: 194 ----IKILLDFVPNHTSNQHEWFK 213
               +K+L D VPNH +  +   +
Sbjct: 103 GGAGVKVLYDVVPNHMNRGYPDKE 126

>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* Length = 435

 Score = 83.3 bits (206), Expect = 7e-19
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 13/105 (12%)

Query: 53  DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK--SPMADFGYDISDY--------- 101
           D  G G      +  K+P   ++ G+ A+W+ P  K  S     GYD  DY         
Sbjct: 19  DVPGGG-IWWDHIRSKIP-EWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQK 76

Query: 102 LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKK 146
            + E  FG  ++   L +  HA GIK++ D V NH +     +  
Sbjct: 77  GTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNP 121

>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* Length = 448

 Score = 69.0 bits (168), Expect = 8e-14
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 63  KGMIEKLPEHLHDLGVGAVWISPIFKS--PMADFGYDISDYLSFEPLFGDLKDFETLKER 120
           + + ++  ++L   G  AV +SP  +       +          +   G+   F  +  R
Sbjct: 14  QDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNR 73

Query: 121 LHALGIKILLDFVPNHTSNQHEWF 144
             A G+ I +D + NH +      
Sbjct: 74  CSAAGVDIYVDTLINHMAAGSGTG 97

>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A* Length = 471

 Score = 67.9 bits (165), Expect = 1e-13
 Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 15/109 (13%)

Query: 41  SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD----FGY 96
           +   HL+   + D           + ++    L   G G V ISP  +  +AD    +  
Sbjct: 11  NSIVHLFEWKWND-----------IADECERFLQPQGFGGVQISPPNEYLVADGRPWWER 59

Query: 97  DISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK 145
                       GD   F  +  R +  G++I +D V NH +  +    
Sbjct: 60  YQPVSYIINTRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGT 108

>1hx0_A Alpha amylase (PPA); inhibitor, carbohydrate, pancreas, hydrolase; HET: GLC AC1 BGC MAL; 1.38A {Sus scrofa} SCOP: b.71.1.1 c.1.8.1 PDB: 1wo2_A* 1ua3_A* 1kxq_A 1kxt_A 1kxv_A 1jfh_A* 1vah_A* 1ppi_A* 3l2m_A* 3l2l_A* 1dhk_A* 1ose_A* 1pig_A* 1pif_A* 1bvn_P 3oli_A* 3old_A* 3olg_A* 3ole_A* 3ij8_A* ... Length = 496

 Score = 62.1 bits (150), Expect = 2e-11
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 63  KGMIEKLPEHLHDLGVGAVWISPIFKSPMADF-------GYDISDYLSFEPLFGDLKDFE 115
             +  +   +L   G G V +SP  ++ +           Y    Y       G+  +F 
Sbjct: 22  VDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSY-KLCTRSGNENEFR 80

Query: 116 TLKERLHALGIKILLDFVPNHTSNQHEW 143
            +  R + +G++I +D V NH       
Sbjct: 81  DMVTRCNNVGVRIYVDAVINHMCGSGAA 108

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A Length = 558

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 19/109 (17%)

Query: 36  EW--WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD 93
            +   +  + Y ++  +F        G  +G+I KL  +L DLG+ A+ I PI     A 
Sbjct: 95  TFLKKEDLIIYEIHVGTFTPE-----GTFEGVIRKLD-YLKDLGITAIEIMPI-----AQ 143

Query: 94  F------GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
           F      GYD     + +  +G  + F  L +  H  G+ ++LD V NH
Sbjct: 144 FPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNH 192

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 4e-08
 Identities = 40/214 (18%), Positives = 61/214 (28%), Gaps = 52/214 (24%)

Query: 19  LSVGFKEDVDVPIQEPLE--WWQTS------VFYHLYPRS--FKDSNGDGVG------DL 62
           LSV F     +P    L   W+         V   L+  S   K      +       +L
Sbjct: 378 LSV-FPPSAHIPTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 63  KGMIEKLPEHLHDLGVGAVWISPIF----KSPMADFGYDISDYLSFEPLFGDLKDFETLK 118
           K  +E     LH   V    I   F      P     Y    ++        LK+ E   
Sbjct: 436 KVKLENEYA-LHRSIVDHYNIPKTFDSDDLIPPYLDQY-FYSHIGHH-----LKNIE--H 486

Query: 119 ERLHALGIKILLDFVPNHTSNQHEWFKKSL--ANIPPYKCASLLARLHDLGVGAVWISPI 176
                L   + LDF          + ++ +   +       S+L  L  L          
Sbjct: 487 PERMTLFRMVFLDF---------RFLEQKIRHDSTAWNASGSILNTLQQL--------KF 529

Query: 177 FKSPMADFGYDISDYLRIKILLDFVPNHTSNQHE 210
           +K  + D   D      +  +LDF+P    N   
Sbjct: 530 YKPYICD--NDPKYERLVNAILDFLPKIEENLIC 561

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} Length = 618

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 17/105 (16%)

Query: 38  WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF--- 94
           W+ +V Y ++  +F        G  +  I KLP +L +LGV  + + P+     A F   
Sbjct: 134 WEQAVVYEMHTGTFTPE-----GTFRAAIAKLP-YLAELGVTVIEVMPV-----AQFGGE 182

Query: 95  ---GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
              GYD     +    +G   DF+   +  H  G+ ++LD V NH
Sbjct: 183 RGWGYDGVLLYAPHSAYGTPDDFKAFIDAAHGYGLSVVLDIVLNH 227

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* Length = 602

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 17/105 (16%)

Query: 38  WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF--- 94
               VFY ++  +F        G  +   EKLP +L +LGV A+ + P+     A F   
Sbjct: 124 LADCVFYEVHVGTFTPE-----GTYRAAAEKLP-YLKELGVTAIQVMPL-----AAFDGQ 172

Query: 95  ---GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
              GYD + + +    +G  +D   L +  H LG+ + LD V NH
Sbjct: 173 RGWGYDGAAFYAPYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNH 217

>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* Length = 1108

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 24/104 (23%)

Query: 51  FKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS--------PMADFGYDISDYL 102
           F+            +I K  +  ++ G+ +  ++P ++S           D GY  +D  
Sbjct: 840 FQPKATTHDELTNVVIAKNADVFNNWGITSFEMAPQYRSSGDHTFLDSTIDNGYAFTD-- 897

Query: 103 SFEPLF----------GDLKDFETLKERLHALGIKILLDFVPNH 136
                +          G   D     + LH   ++++ D V N 
Sbjct: 898 ----RYDLGFNTPTKYGTDGDLRATIQALHHANMQVMADVVDNQ 937

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A Length = 718

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 25/159 (15%)

Query: 1   MDTKLSVLFVPVLLGCIHLSVGFKEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVG 60
            D + S  +VP     + ++  F+ D +  I+      + +V Y ++ + F     D   
Sbjct: 137 YDERDSGEYVPK---SVVINPYFEWDDEDFIKGKKVPLKDTVIYEVHVKGFTKLRLDLPE 193

Query: 61  DLKG----MIEKLP-EHLHDLGVGAVWISPIFKSPMADF----------GYD-IS----- 99
           +++G    +  +    +L DLG+  V + P+F      F          GYD I+     
Sbjct: 194 NIRGTYEGLASEQMISYLKDLGITTVELMPVFHFIDQRFLTDKGLTNYWGYDPINFFSPE 253

Query: 100 -DYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT 137
             Y S   L G +  F+ +   LH  GI++++D V NHT
Sbjct: 254 CRYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDVVYNHT 292

>3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* Length = 1039

 Score = 45.9 bits (108), Expect = 5e-06
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 51  FKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS--------PMADFGYDISD-Y 101
           F              I +  +     G+    ++P + S         + D GY  +D Y
Sbjct: 673 FIYWPTTESERTNVRIAQNADLFKSWGITTFELAPQYNSSKDGTFLDSIIDNGYAFTDRY 732

Query: 102 LSFEPL---FGDLKDFETLKERLHALGIKILLDFVPNHTSN 139
                    +G  +D     + LH  G++ + D+VP+   N
Sbjct: 733 DLGMSTPNKYGSDEDLRNALQALHKAGLQAIADWVPDQIYN 773

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Length = 750

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 25/124 (20%)

Query: 38  WQTSVFYHLYPRSF-KDSNGDGV---GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD 93
            +  V Y ++ R F +          G   G   K   +L  LGV AV   P+ ++    
Sbjct: 176 QKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKAS-YLASLGVTAVEFLPVQETQNDA 234

Query: 94  F-------------GYD-IS------DYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
                         GY   +       Y   +   G   +F+ + +  H  GIK+ +D V
Sbjct: 235 NDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVV 294

Query: 134 PNHT 137
            NHT
Sbjct: 295 YNHT 298

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* Length = 877

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 34/154 (22%)

Query: 25  EDVDVPIQEPLEWWQTSVFYHLYPRSF-KDSNGDGV-----GDLKGMIEKLPEHLHDLGV 78
           +++        +  Q +V Y  + R F  D + DG      G      EKL  +L  LGV
Sbjct: 252 QNLSFAKIANFKGRQDAVIYEAHVRDFTSDQSLDGKLKNQLGTFAAFSEKLD-YLQKLGV 310

Query: 79  GAVWISPIFKSPMADF------------------GYDISDYLSFEPLF--------GDLK 112
             + + P+      +                   GYD   Y +   ++          + 
Sbjct: 311 THIQLLPVLSYFYVNEMDKSRSTAYTSSDNNYNWGYDPQSYFALSGMYSEKPKDPSARIA 370

Query: 113 DFETLKERLHALGIKILLDFVPNHTSNQHEWFKK 146
           + + L   +H  G+ ++LD V NHT+  +  F+ 
Sbjct: 371 ELKQLIHDIHKRGMGVILDVVYNHTAKTY-LFED 403

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} Length = 722

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 65  MIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFETLKERLHA 123
           +  +L +++ D G   V + P+ + P    +GY ++ Y +    FG   DF  L + LH 
Sbjct: 265 LARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPTSRFGTPDDFRALVDALHQ 324

Query: 124 LGIKILLDFVPNH 136
            GI +++D+VP H
Sbjct: 325 AGIGVIVDWVPAH 337

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12} Length = 657

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 20/120 (16%)

Query: 38  WQTSVFYHLYPRSF----KDSNGDGVGDLKGMIEKLP-EHLHDLGVGAVWISPIF----- 87
           W +++ Y  + +       +   +  G  K +   +   +L  LG+ A+ + P+      
Sbjct: 148 WGSTIIYEAHVKGLTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASE 207

Query: 88  ----KSPMADF-GYDISDYLSFEPLF-----GDLKDFETLKERLHALGIKILLDFVPNHT 137
               +  ++++ GY+     +  P +       L +F    + LH  GI+++LD V NH+
Sbjct: 208 PRLQRMGLSNYWGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHS 267

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* Length = 617

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 52  KDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGD 110
           + ++ +     + + ++L  +   +G   + + PI + P    +GY  +   +    FG 
Sbjct: 144 RHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGT 203

Query: 111 LKDFETLKERLHALGIKILLDFVPNH 136
             DF    +  HA G+ ++LD+VP H
Sbjct: 204 RDDFRYFIDAAHAAGLNVILDWVPGH 229

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
4aie_A	549	Glucan 1,6-alpha-glucosidase; hydrolase, glycoside	100.0
1zja_A	557	Trehalulose synthase; sucrose isomerase, alpha-amy	100.0
1m53_A	570	Isomaltulose synthase; klebsiella SP. LX3, sucrose	100.0
1uok_A	558	Oligo-1,6-glucosidase; sugar degradation, hydrolas	100.0
3aj7_A	589	Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro	100.0
2zic_A	543	Dextran glucosidase; TIM barrel, (beta/alpha)8-bar	100.0
2ze0_A	555	Alpha-glucosidase; TIM barrel, glucoside hydrolase	100.0
1wza_A	488	Alpha-amylase A; hydrolase, halophilic, thermophil	100.0
2wc7_A	488	Alpha amylase, catalytic region; CD/PUL-hydrolyzin	100.0
1lwj_A	441	4-alpha-glucanotransferase; alpha-amylase family,	100.0
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	100.0
2z1k_A	475	(NEO)pullulanase; hydrolase, structural genomics,	100.0
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	100.0
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	100.0
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	100.0
3k8k_A	669	Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, bet	100.0
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	100.0
3czg_A	644	Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC;	100.0
1g5a_A	628	Amylosucrase; glycosyltransferase, glycoside hydro	100.0
3edf_A	601	FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c	100.0
3ucq_A	655	Amylosucrase; thermostability, amylose synthesis,	100.0
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	100.0
3dhu_A	449	Alpha-amylase; structural genomics, hydrolase, gly	99.98
2aaa_A	484	Alpha-amylase; glycosidase; 2.10A {Aspergillus nig	99.98
2guy_A	478	Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase;	99.97
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	99.97
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	99.97
2dh2_A	424	4F2 cell-surface antigen heavy chain; TIM-barrel,	99.97
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	99.97
3bc9_A	599	AMYB, alpha amylase, catalytic region; acarbose, t	99.96
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	99.96
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	99.96
1mxg_A	435	Alpha amylase; hyperthermostable, family 13 glycos	99.96
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	99.96
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	99.96
3zss_A	695	Putative glucanohydrolase PEP1A; alpha-glucan bios	99.95
1wpc_A	485	Glucan 1,4-alpha-maltohexaosidase; maltohexaose-pr	99.95
1ht6_A	405	AMY1, alpha-amylase isozyme 1; barley, beta-alpha-	99.95
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	99.95
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	99.95
1ud2_A	480	Amylase, alpha-amylase; calcium-free, alkaline, hy	99.95
3bh4_A	483	Alpha-amylase; calcium, carbohydrate metabolism, g	99.95
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	99.95
1gjw_A	637	Maltodextrin glycosyltransferase; alpha-amylase, m	99.94
1hvx_A	515	Alpha-amylase; hydrolase, glycosyltransferase, the	99.94
1r7a_A	504	Sucrose phosphorylase; beta-alpha-barrels, dimer,	99.94
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	99.94
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	99.94
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	99.94
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	99.94
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	99.94
1ua7_A	422	Alpha-amylase; beta-alpha-barrels, acarbose, greek	99.94
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	99.94
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	99.93
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	99.93
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	99.93
1jae_A	471	Alpha-amylase; glycosidase, carbohydrate metabolis	99.93
1iv8_A	720	Maltooligosyl trehalose synthase; beta alpha barre	99.92
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	99.92
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	99.92
3aie_A	844	Glucosyltransferase-SI; beta-alpha-barrels; HET: M	99.91
1g94_A	448	Alpha-amylase; beta-alpha-8-barrel, 3 domain struc	99.91
3hje_A	704	704AA long hypothetical glycosyltransferase; treha	99.91
4gqr_A	496	Pancreatic alpha-amylase; glycosyl hydrolase, diab	99.9
3klk_A	1039	Glucansucrase; native form, open conformation, mul	99.9
3ttq_A	1108	Dextransucrase; (beta/alpha)8 barrel, transferase;	99.89
4aie_A	549	Glucan 1,6-alpha-glucosidase; hydrolase, glycoside	98.71
1m53_A	570	Isomaltulose synthase; klebsiella SP. LX3, sucrose	98.55
1zja_A	557	Trehalulose synthase; sucrose isomerase, alpha-amy	98.55
1uok_A	558	Oligo-1,6-glucosidase; sugar degradation, hydrolas	98.54
2zic_A	543	Dextran glucosidase; TIM barrel, (beta/alpha)8-bar	98.46
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	98.45
3aj7_A	589	Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro	98.45
1g5a_A	628	Amylosucrase; glycosyltransferase, glycoside hydro	98.44
1wza_A	488	Alpha-amylase A; hydrolase, halophilic, thermophil	98.41
1lwj_A	441	4-alpha-glucanotransferase; alpha-amylase family,	98.38
2ze0_A	555	Alpha-glucosidase; TIM barrel, glucoside hydrolase	98.38
2wc7_A	488	Alpha amylase, catalytic region; CD/PUL-hydrolyzin	98.37
3czg_A	644	Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC;	98.34
3k8k_A	669	Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, bet	98.21
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	98.2
2z1k_A	475	(NEO)pullulanase; hydrolase, structural genomics,	98.19
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	98.17
1r7a_A	504	Sucrose phosphorylase; beta-alpha-barrels, dimer,	98.14
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	98.1
3ucq_A	655	Amylosucrase; thermostability, amylose synthesis,	98.09
3edf_A	601	FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c	98.04
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	98.0
1iv8_A	720	Maltooligosyl trehalose synthase; beta alpha barre	97.88
2dh2_A	424	4F2 cell-surface antigen heavy chain; TIM-barrel,	97.82
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	97.68
3hje_A	704	704AA long hypothetical glycosyltransferase; treha	97.55
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	97.38
1wpc_A	485	Glucan 1,4-alpha-maltohexaosidase; maltohexaose-pr	97.36
1ud2_A	480	Amylase, alpha-amylase; calcium-free, alkaline, hy	97.32
1ua7_A	422	Alpha-amylase; beta-alpha-barrels, acarbose, greek	97.32
3ttq_A	1108	Dextransucrase; (beta/alpha)8 barrel, transferase;	97.3
3dhu_A	449	Alpha-amylase; structural genomics, hydrolase, gly	97.3
3bc9_A	599	AMYB, alpha amylase, catalytic region; acarbose, t	97.19
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	97.17
2aaa_A	484	Alpha-amylase; glycosidase; 2.10A {Aspergillus nig	97.16
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	97.15
1ht6_A	405	AMY1, alpha-amylase isozyme 1; barley, beta-alpha-	97.15
2guy_A	478	Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase;	97.13
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	97.12
1hvx_A	515	Alpha-amylase; hydrolase, glycosyltransferase, the	97.1
3bh4_A	483	Alpha-amylase; calcium, carbohydrate metabolism, g	97.08
3klk_A	1039	Glucansucrase; native form, open conformation, mul	97.07
1jae_A	471	Alpha-amylase; glycosidase, carbohydrate metabolis	97.06
1mxg_A	435	Alpha amylase; hyperthermostable, family 13 glycos	97.03
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	97.01
2yfo_A	720	Alpha-galactosidase-sucrose kinase agask; hydrolas	96.99
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	96.99
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	96.95
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	96.85
3aie_A	844	Glucosyltransferase-SI; beta-alpha-barrels; HET: M	96.77
1g94_A	448	Alpha-amylase; beta-alpha-8-barrel, 3 domain struc	96.76
1qnr_A	344	Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt	96.67
3mi6_A	745	Alpha-galactosidase; NESG, structural genomics, PS	96.64
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	96.6
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	96.56
3zss_A	695	Putative glucanohydrolase PEP1A; alpha-glucan bios	96.48
4gqr_A	496	Pancreatic alpha-amylase; glycosyl hydrolase, diab	96.45
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	96.28
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	96.23
2xn2_A	732	Alpha-galactosidase; hydrolase, glycosidase; HET:	96.19
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	96.09
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	96.09
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	96.07
3qho_A	458	Endoglucanase, 458AA long hypothetical endo-1,4-be	95.91
1ece_A	358	Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.	95.85
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	95.77
3vup_A	351	Beta-1,4-mannanase; TIM barrel, digestive fluid, H	95.58
3civ_A	343	Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.	95.56
3pzt_A	327	Endoglucanase; alpha/beta barrel, glycosyl hydrola	95.39
1ceo_A	343	Cellulase CELC; glycosyl hydrolase, family A/5 of	95.3
1hjs_A	332	Beta-1,4-galactanase; 4-galactanases, family 53 gl	95.22
2whl_A	294	Beta-mannanase, baman5; glycoside hydrolase, hydro	95.17
1zy9_A	564	Alpha-galactosidase; TM1192, struc genomics, joint	95.15
3nco_A	320	Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1	95.08
1vjz_A	341	Endoglucanase; TM1752, structural genomics, JCSG,	94.99
1h4p_A	408	Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca	94.99
1gjw_A	637	Maltodextrin glycosyltransferase; alpha-amylase, m	94.92
1ur4_A	399	Galactanase; hydrolase, beta-1, glycoside hydrolas	94.85
3n9k_A	399	Glucan 1,3-beta-glucosidase; aromatic entranceway/	94.84
1bqc_A	302	Protein (beta-mannanase); glycosyl hydrolase, fami	94.81
3pzg_A	383	Mannan endo-1,4-beta-mannosidase. glycosyl hydrol	94.72
1uuq_A	440	Mannosyl-oligosaccharide glucosidase; hydrolase, m	94.62
3jug_A	345	Beta-mannanase; TIM-barrel, glycosidase, hydrolase	94.52
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	94.46
1rh9_A	373	Endo-beta-mannanase; endo-beta-mannase, retaining,	94.45
1fob_A	334	Beta-1,4-galactanase; B/A barrel, glycosyl hydrola	94.42
1esw_A	500	Amylomaltase; (beta,alpha)8-barrel, glucanotransfe	94.37
2c0h_A	353	Mannan endo-1,4-beta-mannosidase; hydrolase, signa	94.32
1edg_A	380	Endoglucanase A; family A, cellulases, xylanases,	94.32
3icg_A	515	Endoglucanase D; cellulase, xylanase, carbohydrate	94.24
3ndz_A	345	Endoglucanase D; cellotriose, xylanase, carbohydra	94.19
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	94.14
1tvn_A	293	Cellulase, endoglucanase G; glycoside hydrolase, C	94.08
1tz7_A	505	4-alpha-glucanotransferase; (beta, alpha)8- barrel	94.04
1x1n_A	524	4-alpha-glucanotransferase; disproportionating enz	93.97
1egz_A	291	Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL	93.8
3aof_A	317	Endoglucanase; glycosyl hydrolase family 5, cellul	93.75
2y8k_A	491	Arabinoxylanase, carbohydrate binding family 6; hy	93.75
1wky_A	464	Endo-beta-1,4-mannanase; TIM barrel, catalytic dom	93.68
3l55_A	353	B-1,4-endoglucanase/cellulase; putative beta-1,4-e	93.63
3qr3_A	340	Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A	93.48
1h1n_A	305	Endo type cellulase ENGI; hydrolase, glycosyl hydr	93.44
2jep_A	395	Xyloglucanase; family 5, plant cell WALL, hydrolas	93.2
1x7f_A	385	Outer surface protein; structural genomics, unknow	93.16
3ayr_A	376	Endoglucanase; TIM barrel, hydrolase, carbohydrate	93.13
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	93.11
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	93.1
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	93.05
4awe_A	387	Endo-beta-D-1,4-mannanase; hydrolase, endo-mannana	92.79
1g01_A	364	Endoglucanase; alpha/beta barrel, TIM barrel, hydr	92.58
4fnq_A	729	Alpha-galactosidase AGAB; glycoside hydrolase, hyd	92.45
2w61_A	555	GAS2P, glycolipid-anchored surface protein 2; glyc	92.41
2cks_A	306	Endoglucanase E-5; carbohydrate metabolism, polysa	92.27
7a3h_A	303	Endoglucanase; hydrolase, cellulose degradation, g	92.2
3tty_A	675	Beta-GAL, beta-galactosidase; TIM barrel, glycosid	91.82
1kwg_A	645	Beta-galactosidase; TIM barrel, glycoside hydrolas	91.65
2osx_A	481	Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel	91.59
2ki0_A	36	DS119; beta-alpha-beta, de novo protein; NMR {Synt	91.31
3u7v_A	552	Beta-galactosidase; structural genomics, PSI-biolo	91.05
2p0o_A	372	Hypothetical protein DUF871; structural genomics,	90.88
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	88.72
4hty_A	359	Cellulase; (alpha/beta)8 barrel, family 5 endogluc	88.66
1now_A	507	Beta-hexosaminidase beta chain; (beta/alpha)8-barr	88.52
2gjx_A	507	Beta-hexosaminidase alpha chain; beta-hexosaminida	88.35
3d3a_A	612	Beta-galactosidase; protein structure initiative I	88.06
3gyc_A	393	Putative glycoside hydrolase; YP_001304622.1, stru	88.05
4h41_A	340	Putative alpha-L-fucosidase; hydrolase, carbohydra	87.86
2f2h_A	773	Putative family 31 glucosidase YICI; BETA8alpha8 b	87.47
3can_A	182	Pyruvate-formate lyase-activating enzyme; structur	87.17
1jak_A	512	Beta-N-acetylhexosaminidase; glycoside hydrolase,	86.61
4e8d_A	595	Glycosyl hydrolase, family 35; TIM barrel, beta-pr	86.48
2o9p_A	454	Beta-glucosidase B; family 1 glycoside hydrolase;	86.33
3thd_A	654	Beta-galactosidase; TIM-barrel domain, glycosyl hy	86.04
1ug6_A	431	Beta-glycosidase; glucosidase, atomic resolution,	85.73
3a24_A	641	Alpha-galactosidase; glycoside hydrolase family 97	85.68
2g3m_A	693	Maltase, alpha-glucosidase; hydrolase, glycoside h	84.87
1vff_A	423	Beta-glucosidase; glycosyl hydrolase, membrane-bou	84.38
2wvv_A	450	Alpha-L-fucosidase; alpha-L-fucose, hydrolase, gly	83.97
1qox_A	449	Beta-glucosidase; hydrolase, cellulose degradation	83.53
1qwg_A	251	PSL synthase;, (2R)-phospho-3-sulfolactate synthas	83.23
2j78_A	468	Beta-glucosidase A; family 1, hydrolase, inhibitor	82.92
2zxd_A	455	Alpha-L-fucosidase, putative; TIM barrel, hydrolas	82.17
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	82.16
1yht_A	367	DSPB; beta barrel, hydrolase; 2.00A {Aggregatibact	81.64
3og2_A	1003	Beta-galactosidase; TIM barrel domain, glycoside h	80.98
3lpp_A	898	Sucrase-isomaltase; glycoside hydrolase family 31,	80.7
1tg7_A	971	Beta-galactosidase; TIM barrel domain, glycoside h	80.47
3ahx_A	453	Beta-glucosidase A; cellulases, glycosyl hydrolase	80.19
2d73_A	738	Alpha-glucosidase SUSB; glycoside hydrolase family	80.1

>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}

Probab=100.00  E-value=4.6e-42  Score=317.19  Aligned_cols=159  Identities=36%  Similarity=0.765  Sum_probs=144.4

Q ss_pred             CCccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHH
Q psy8670          34 PLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKD  113 (224)
Q Consensus        34 ~~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~  113 (224)
                      .++||+++||||||+++|+++++++.|||+|++++| +|||+||||+|||+||++++..++||++.||++|||+|||++|
T Consensus         3 ~~~Ww~~~viYei~~~~F~d~~~dg~Gdl~Gi~~kL-dYLk~LGvt~I~L~Pi~~~~~~~~GYd~~dy~~vdp~~Gt~~d   81 (549)
T 4aie_A            3 SASWWKNAVVYQVYPKSFQDSNGDGIGDLQGIISRL-DYLEKLGIDAIWLSPVYQSPGVDNGYDISDYEAIDPQYGTMAD   81 (549)
T ss_dssp             -CCGGGSCCEEEECGGGTCCSSSSSSCCHHHHHTTH-HHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHH
T ss_pred             CchhhccCeEEEEEcchhcCCCCCCCcCHHHHHHhh-HHHHHCCCCEEEeCCCcCCCCCCCCcCccCCCCcCcccCCHHH
Confidence            468999999999999999999999999999999999 9999999999999999999888899999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC-CCCccccccchhcccCC------------------Ccceeec
Q psy8670         114 FETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN-IPPYKCASLLARLHDLG------------------VGAVWIS  174 (224)
Q Consensus       114 ~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~-~~~~~~~f~w~~~~~lG------------------~~~~w~~  174 (224)
                      |++||++||++||+||+|+|+||||.+|+||++...+ ..+|.+||+|.+.....                  ..+.++.
T Consensus        82 fk~Lv~~aH~~Gi~VilD~V~NHts~~~~wf~~~~~~~~~~~~~~y~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (549)
T 4aie_A           82 MDELISKAKEHHIKIVMDLVVNHTSDQHKWFVEAKKGKDNQYRDYYIWRDPVDEHEPNDLKSAFSGSAWKYDERSGQYYL  161 (549)
T ss_dssp             HHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTSTTGGGBCEECCBTTBCSSCCBCTTSSBSEEEETTTTEEEE
T ss_pred             HHHHHHHHHHCCCEEEEEECccCCcCCcchhhhhhhcccccccccccccCCcccCCCCCcccccCCCcccccccCCceEe
Confidence            9999999999999999999999999999999999876 67899999987643211                  1345666


Q ss_pred             ccccCCCCCCCCcchhhHH
Q psy8670         175 PIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       175 p~f~~~~~dlny~n~d~~~  193 (224)
                      ..|...++|+|+.||++++
T Consensus       162 ~~f~~~~~dln~~np~v~~  180 (549)
T 4aie_A          162 HFFADQQPDLNWQNTELRQ  180 (549)
T ss_dssp             CSSCTTSCBBCTTCHHHHH
T ss_pred             cccCCCCCccccCCHHHHH
Confidence            6778889999999999876

>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*

Probab=100.00  E-value=3.7e-40  Score=306.99  Aligned_cols=160  Identities=42%  Similarity=0.809  Sum_probs=143.8

Q ss_pred             CCCccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHH
Q psy8670          33 EPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLK  112 (224)
Q Consensus        33 ~~~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~  112 (224)
                      +.+.||++++|||||+++|+++++++.|+|+|++++| +|||+||||+|||+||++++..++||++.||++|||+|||++
T Consensus         2 p~~~w~~~~viYqi~~~~F~~~~~dg~Gdl~gi~~~L-dyl~~LGv~~I~L~Pi~~~~~~~~GYd~~dy~~idp~~Gt~~   80 (557)
T 1zja_A            2 PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKL-DYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTME   80 (557)
T ss_dssp             CCCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTH-HHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECTTTCCHH
T ss_pred             CcchhhhcCcEEEEEchHhcCCCCCCccCHHHHHHHH-HHHHHcCCCEEEECCCccCCCCCCCCCcccccccCcccCCHH
Confidence            4568999999999999999999999999999999999 999999999999999999987789999999999999999999


Q ss_pred             HHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhc-CCCCccccccchhcccC----------C--------Ccceee
Q psy8670         113 DFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLA-NIPPYKCASLLARLHDL----------G--------VGAVWI  173 (224)
Q Consensus       113 ~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~-~~~~~~~~f~w~~~~~l----------G--------~~~~w~  173 (224)
                      ||++||++||++||+||+|+|+||+|.+|+||++++. .+++|.+||+|.+..+.          |        ....|+
T Consensus        81 df~~Lv~~aH~~Gi~VilD~V~NHts~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~~~~w~~~~~~~~~y  160 (557)
T 1zja_A           81 DFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYY  160 (557)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCBTTBCSSCCBCTTSSBSEEEETTTTEEE
T ss_pred             HHHHHHHHHHHCCCEEEEEEeccccccchhHHHHhhcCCCCCCccceEecCCcCCCCCccccccCCCccccccCCcCcEE
Confidence            9999999999999999999999999999999999874 47899999998764210          0        113466


Q ss_pred             cccccCCCCCCCCcchhhHH
Q psy8670         174 SPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       174 ~p~f~~~~~dlny~n~d~~~  193 (224)
                      .+.|...++|+||+||++++
T Consensus       161 ~~~f~~~~pdLN~~np~Vr~  180 (557)
T 1zja_A          161 LHYFGRQQPDLNWDTPKLRE  180 (557)
T ss_dssp             ECSSCTTSCBBCTTCHHHHH
T ss_pred             EecccccCCccCCCCHHHHH
Confidence            66777788999999999876

>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1

Probab=100.00  E-value=9.7e-40  Score=304.97  Aligned_cols=161  Identities=38%  Similarity=0.768  Sum_probs=143.7

Q ss_pred             CCCCccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCH
Q psy8670          32 QEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDL  111 (224)
Q Consensus        32 ~~~~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~  111 (224)
                      ...+.||++++||||++++|+++++++.|+|+|++++| +|||+||||+|||+||++++..++||++.||++|||+|||+
T Consensus        14 ~~~~~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~L-dyL~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~idp~~Gt~   92 (570)
T 1m53_A           14 SEYPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKL-DYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTM   92 (570)
T ss_dssp             -CCCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTH-HHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCH
T ss_pred             ccCchhHhhCcEEEEechhhccCCCCCccCHHHHHHHH-HHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCH
Confidence            34578999999999999999999999999999999999 99999999999999999998778999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhc-CCCCccccccchhcccC----------C--------Cccee
Q psy8670         112 KDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLA-NIPPYKCASLLARLHDL----------G--------VGAVW  172 (224)
Q Consensus       112 ~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~-~~~~~~~~f~w~~~~~l----------G--------~~~~w  172 (224)
                      +||++||++||++||+||+|+|+||+|.+|+||++++. .+++|.+||+|.+..+.          |        ....|
T Consensus        93 ~df~~lv~~aH~~Gi~VilD~V~NH~s~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~~~~w~~~~~~~~~  172 (570)
T 1m53_A           93 EDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQY  172 (570)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSSCSSCCBCTTSSBSEEECTTTCCE
T ss_pred             HHHHHHHHHHHHCCCEEEEEEeccccccccHHHHHhhcCCCCCCccceeecCCCCCCCCccccccCCCccccccCCCCcE
Confidence            99999999999999999999999999999999999874 47899999998764211          0        01345


Q ss_pred             ecccccCCCCCCCCcchhhHH
Q psy8670         173 ISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       173 ~~p~f~~~~~dlny~n~d~~~  193 (224)
                      +...|...++||||.||++++
T Consensus       173 y~~~f~~~~pdLN~~np~Vr~  193 (570)
T 1m53_A          173 YLHYFARQQPDLNWDNPKVRE  193 (570)
T ss_dssp             EECSSCTTCCBBCTTSHHHHH
T ss_pred             EECcccCcCCccCCCCHHHHH
Confidence            666777788999999999876

>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1

Probab=100.00  E-value=1.3e-39  Score=303.47  Aligned_cols=158  Identities=37%  Similarity=0.772  Sum_probs=142.4

Q ss_pred             CccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHH
Q psy8670          35 LEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDF  114 (224)
Q Consensus        35 ~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~  114 (224)
                      +.||++++||||++++|+++++++.|+|+|++++| +|||+||||+|||+||++++..++||++.||++|||+|||++||
T Consensus         3 ~~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~l-dyl~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~id~~~Gt~~df   81 (558)
T 1uok_A            3 KQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKL-DYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDW   81 (558)
T ss_dssp             CCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHTTH-HHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHH
T ss_pred             chhhhcCeEEEEecHHhcCCCCCCcCCHHHHHHHH-HHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHH
Confidence            68999999999999999999999999999999999 99999999999999999998778999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhc-CCCCccccccchhcccC----------C--------Ccceeecc
Q psy8670         115 ETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLA-NIPPYKCASLLARLHDL----------G--------VGAVWISP  175 (224)
Q Consensus       115 ~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~-~~~~~~~~f~w~~~~~l----------G--------~~~~w~~p  175 (224)
                      ++||++||++||+||+|+|+||||.+|+||++++. .+++|.+||+|.+..+.          |        ....|+..
T Consensus        82 ~~lv~~~h~~Gi~VilD~V~NH~s~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~~~~w~~~~~~~~~y~~  161 (558)
T 1uok_A           82 DELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDEYYLH  161 (558)
T ss_dssp             HHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSSCSSCBBCTTSSBSEEEETTTTEEEEC
T ss_pred             HHHHHHHHHCCCEEEEEEecccccccchHHHHHhcCCCCCcccceEeccCcCCCCCccccccCCCccccccCCcCcEEee
Confidence            99999999999999999999999999999998874 47899999998764210          0        11345666


Q ss_pred             cccCCCCCCCCcchhhHH
Q psy8670         176 IFKSPMADFGYDISDYLR  193 (224)
Q Consensus       176 ~f~~~~~dlny~n~d~~~  193 (224)
                      .|...++|||+.||++++
T Consensus       162 ~f~~~~pdLn~~np~Vr~  179 (558)
T 1uok_A          162 LFSKKQPDLNWDNEKVRQ  179 (558)
T ss_dssp             SSCTTSCBBCTTSHHHHH
T ss_pred             ccccccccccCCCHHHHH
Confidence            677788999999999876

>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A*

Probab=100.00  E-value=1.4e-39  Score=304.96  Aligned_cols=160  Identities=38%  Similarity=0.724  Sum_probs=143.5

Q ss_pred             CCCccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHH
Q psy8670          33 EPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLK  112 (224)
Q Consensus        33 ~~~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~  112 (224)
                      +.+.||++++|||||+++|+++++++.|+|+|++++| +||++||||+|||+||++++..++||++.||++|||+|||++
T Consensus        10 ~~~~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~L-dyl~~LGv~~i~l~Pi~~~~~~~~GY~~~dy~~id~~~Gt~~   88 (589)
T 3aj7_A           10 TEPKWWKEATFYQIYPASFKDSNDDGWGDMKGIASKL-EYIKELGADAIWISPFYDSPQDDMGYDIANYEKVWPTYGTNE   88 (589)
T ss_dssp             GSCCHHHHCCEEEECGGGSCCSSSSSSCCHHHHHHTH-HHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECTTTCCHH
T ss_pred             CCccchhhCeEEEEEhHHhcCCCCCCccCHHHHHHHH-HHHHHcCCCEEEECCcccCCCCCCCcCcccccccccccCCHH
Confidence            4578999999999999999999999999999999999 999999999999999999987789999999999999999999


Q ss_pred             HHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhc-CCCCccccccchhccc----------CC--------------
Q psy8670         113 DFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLA-NIPPYKCASLLARLHD----------LG--------------  167 (224)
Q Consensus       113 ~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~-~~~~~~~~f~w~~~~~----------lG--------------  167 (224)
                      ||++||++||++||+||+|+|+||++.+|+||++++. .+++|.+||+|.+...          ..              
T Consensus        89 df~~lv~~~h~~Gi~VilD~V~NH~~~~~~wf~~~~~~~~~~y~d~y~~~~~~~~~~~g~~~~p~~~~~~f~g~~w~~~~  168 (589)
T 3aj7_A           89 DCFALIEKTHKLGMKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFDE  168 (589)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCSSSTTGGGBCEECCSEECTTSCEECSSCBBCTTSSBSEEEET
T ss_pred             HHHHHHHHHHHCCCEEEEEecccccccchhHHHHHhcCCCCCCCCceeecCCcccccccCCCCCCcccccCCCccceecC
Confidence            9999999999999999999999999999999998875 4788999999865431          01              


Q ss_pred             CcceeecccccCCCCCCCCcchhhHH
Q psy8670         168 VGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       168 ~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      ....|+...|...++|||+.||++++
T Consensus       169 ~~~~~y~~~f~~~~pdLN~~np~Vr~  194 (589)
T 3aj7_A          169 KTQEFYLRLFCSTQPDLNWENEDCRK  194 (589)
T ss_dssp             TTTEEEECSSSTTCCBBCTTCHHHHH
T ss_pred             CCCeEEECccCCCCCccCCCCHHHHH
Confidence            01345666777889999999999776

>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*

Probab=100.00  E-value=2.7e-39  Score=300.45  Aligned_cols=158  Identities=36%  Similarity=0.775  Sum_probs=142.3

Q ss_pred             CccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHH
Q psy8670          35 LEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDF  114 (224)
Q Consensus        35 ~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~  114 (224)
                      +.||++++||||++++|+++++++.|+|+|++++| +|||+||||+|||+||++++..++||++.||++|||+|||++||
T Consensus         3 ~~W~~~~viYqi~~~~F~~~~~dg~Gdl~gi~~~L-dyl~~LGv~~I~l~Pi~~~~~~~~GY~~~dy~~idp~~Gt~~df   81 (543)
T 2zic_A            3 KHWWHKATVYQIYPKSFMDTNGDGIGDLKGITSKL-DYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADM   81 (543)
T ss_dssp             CCGGGGCCEEEECGGGTCCSSSSSSCCHHHHHHTH-HHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHH
T ss_pred             ccchhhCeEEEEEcHHhcCCCCCCccCHHHHHHHH-HHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHH
Confidence            68999999999999999999999999999999999 99999999999999999998778999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC-CCCccccccchhc-cc----CC--------CcceeecccccCC
Q psy8670         115 ETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN-IPPYKCASLLARL-HD----LG--------VGAVWISPIFKSP  180 (224)
Q Consensus       115 ~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~-~~~~~~~f~w~~~-~~----lG--------~~~~w~~p~f~~~  180 (224)
                      ++||++||++||+||+|+|+||+|.+|+||++++.+ +++|.+||+|.+. ..    .|        ....|+...|...
T Consensus        82 ~~lv~~~h~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~y~d~y~~~~~p~~~~~~f~~~~w~~~~~~~~~y~~~f~~~  161 (543)
T 2zic_A           82 DNLLTQAKMRGIKIIMDLVVNHTSDEHAWFIEAREHPDSSERDYYIWCDQPNDLESIFGGSAWQYDDKSDQYYLHFFSKK  161 (543)
T ss_dssp             HHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHCTTSGGGGGBCEESSCCSCBCTTSSBSEEEETTTTEEEECSSCTT
T ss_pred             HHHHHHHHHCCCEEEEEEecCcccccchhhHhhhcCCCCCCcceeecCCCCCcccccCCCCCCcccCCCCcEEECcccCC
Confidence            999999999999999999999999999999998854 7789999998752 11    01        1234666677788


Q ss_pred             CCCCCCcchhhHH
Q psy8670         181 MADFGYDISDYLR  193 (224)
Q Consensus       181 ~~dlny~n~d~~~  193 (224)
                      ++|||++||++++
T Consensus       162 ~pdLN~~np~Vr~  174 (543)
T 2zic_A          162 QPDLNWENANLRQ  174 (543)
T ss_dssp             SCBBCTTCHHHHH
T ss_pred             CCccCcCCHHHHH
Confidence            9999999999886

>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP}

Probab=100.00  E-value=7.1e-39  Score=298.23  Aligned_cols=158  Identities=43%  Similarity=0.797  Sum_probs=142.1

Q ss_pred             CccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHH
Q psy8670          35 LEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDF  114 (224)
Q Consensus        35 ~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~  114 (224)
                      +.||++++||||++++|+++++++.|+|+|++++| +|||+||||+|||+||++++..++||++.||++|||+|||++||
T Consensus         3 ~~w~~~~viYqi~~~~F~d~~~dg~Gd~~gi~~~l-dyl~~lGv~~i~l~Pi~~~~~~~~gY~~~dy~~id~~~Gt~~d~   81 (555)
T 2ze0_A            3 KTWWKEGVAYQIYPRSFMDANGDGIGDLRGIIEKL-DYLVELGVDIVWICPIYRSPNADNGYDISDYYAIMDEFGTMDDF   81 (555)
T ss_dssp             CCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTH-HHHHHHTCCEEEECCCEECCCTTTTCSCSEEEEECGGGCCHHHH
T ss_pred             hhhhhcCcEEEEEchHhcCCCCCCcCCHHHHHHHH-HHHHHcCCCEEEeCCcccCCCCCCCcCcccccccCcccCCHHHH
Confidence            68999999999999999999999999999999999 99999999999999999998778999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhc-CCCCccccccchhcccC----------C--------Ccceeecc
Q psy8670         115 ETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLA-NIPPYKCASLLARLHDL----------G--------VGAVWISP  175 (224)
Q Consensus       115 ~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~-~~~~~~~~f~w~~~~~l----------G--------~~~~w~~p  175 (224)
                      ++||++||++||+||+|+|+||++.+|+||++++. ..++|.+||+|.+..+.          |        ....|+..
T Consensus        82 ~~lv~~~h~~Gi~vilD~V~NH~~~~~~~f~~~~~~~~~~~~~~y~~~~~~~g~~p~~~~~~f~~~~w~~~~~~~~~~~~  161 (555)
T 2ze0_A           82 DELLAQAHRRGLKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRDGKDGREPNNWESIFGGSAWQYDERTGQYYLH  161 (555)
T ss_dssp             HHHHHHHHHTTCEEEEEEECSBCCTTSHHHHHHHHCSSSTTGGGBCEECCBTTBCSSCEECTTSSBSEEEETTTTEEEEC
T ss_pred             HHHHHHHHHCCCEEEEEEecccccchhhHHHHhhcCCCCCccccccccCCCCCCCCCcccccCCCccceecCCCCceeec
Confidence            99999999999999999999999999999998874 47889999998764211          0        11345666


Q ss_pred             cccCCCCCCCCcchhhHH
Q psy8670         176 IFKSPMADFGYDISDYLR  193 (224)
Q Consensus       176 ~f~~~~~dlny~n~d~~~  193 (224)
                      .|...++|||+.||++++
T Consensus       162 ~f~~~~pdLn~~np~V~~  179 (555)
T 2ze0_A          162 IFDVKQPDLNWENSEVRQ  179 (555)
T ss_dssp             SSCTTCCBBCTTCHHHHH
T ss_pred             ccCccCCccCCCCHHHHH
Confidence            777788999999999876

>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1

Probab=100.00  E-value=6.1e-38  Score=287.51  Aligned_cols=154  Identities=41%  Similarity=0.720  Sum_probs=136.9

Q ss_pred             CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHH--------HHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCC
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHL--------HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFG  109 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l--------~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G  109 (224)
                      .+++||||||+++|+++++++.|+|+|++++| +||        |+||||+|||+||++++. .+||++.||++|||+||
T Consensus         2 ~~~~viYqi~~~~F~~~~~~g~Gdl~gi~~~L-dyL~~~~~~~~~~LGv~~I~L~Pi~~~~~-~~GYd~~dy~~idp~~G   79 (488)
T 1wza_A            2 EKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKL-DYLNDGDPETIADLGVNGIWLMPIFKSPS-YHGYDVTDYYKINPDYG   79 (488)
T ss_dssp             CCCCCEEEECGGGSCCSSSSSCCCHHHHHHTH-HHHCCSCTTCCSSCCCSEEEECCCEECSS-SSCCSCSEEEEECGGGC
T ss_pred             CCCcEEEEEEChhhcCCCCCCcCCHHHHHHhh-hhhhccccchhhhcCccEEEECCcccCCC-CCCcCcccccccCcccC
Confidence            35789999999999999999999999999999 999        999999999999999885 49999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC-CCCccccccchhcccC-------CC------cceeecc
Q psy8670         110 DLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN-IPPYKCASLLARLHDL-------GV------GAVWISP  175 (224)
Q Consensus       110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~-~~~~~~~f~w~~~~~l-------G~------~~~w~~p  175 (224)
                      |++||++||++||++||+||+|+|+||++.+|+||++++.+ .++|.+||+|.+....       |.      +..|+..
T Consensus        80 t~~d~~~Lv~~aH~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  159 (488)
T 1wza_A           80 TLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYG  159 (488)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCCBCSSSCBCSEEEETTEEEEC
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEeccccccCccHhhhhhhcCCCCCCcCeeecCCCCCCCCCccccCCCcccccCCceEEe
Confidence            99999999999999999999999999999999999998865 6789999998763210       10      1235566


Q ss_pred             cccCCCCCCCCcchhhHH
Q psy8670         176 IFKSPMADFGYDISDYLR  193 (224)
Q Consensus       176 ~f~~~~~dlny~n~d~~~  193 (224)
                      .|...++|+|++||++++
T Consensus       160 ~f~~~~pdln~~np~Vr~  177 (488)
T 1wza_A          160 YFWSGMPDLNYNNPEVQE  177 (488)
T ss_dssp             SSCTTSCBBCTTSHHHHH
T ss_pred             ccCCCCcccccCCHHHHH
Confidence            677788999999999886

>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A

Probab=100.00  E-value=4.2e-38  Score=288.61  Aligned_cols=159  Identities=26%  Similarity=0.488  Sum_probs=135.6

Q ss_pred             CCCccCCCceEEEEecccc-cCcCC----CC-----------------CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC
Q psy8670          33 EPLEWWQTSVFYHLYPRSF-KDSNG----DG-----------------VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP   90 (224)
Q Consensus        33 ~~~~w~~~~viY~i~~~~f-~~~~~----~~-----------------~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~   90 (224)
                      ..++||+++|||||+|++| .++++    .+                 .|+|+|++++| +|||+||||+|||+||++++
T Consensus         4 ~~~~W~~~~viYqi~~~~F~~~gd~~~d~~~~~~~~~w~~~~~~~~~~~Gdl~gi~~~L-dyL~~LGv~~I~L~Pi~~~~   82 (488)
T 2wc7_A            4 QTPDWVKHAVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMEDL-DYIQNLGINAIYFTPIFQSA   82 (488)
T ss_dssp             CCCHHHHTCCEEEECGGGTCCCSSCCCCSCTTCCGGGGGGCHHHHC-CCCCHHHHHHTH-HHHHHHTCCEEEESCCEEEC
T ss_pred             CCCCccccceEEEEccccccCCCCccCCcccccccccccCCCccCccCCcCHHHHHHhh-HHHHHcCCCEEEECCCCCCC
Confidence            4578999999999999999 55431    12                 79999999999 99999999999999999987


Q ss_pred             CCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC--CCCccccccchh-cccCC
Q psy8670          91 MADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN--IPPYKCASLLAR-LHDLG  167 (224)
Q Consensus        91 ~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~--~~~~~~~f~w~~-~~~lG  167 (224)
                      . ++||++.||++|||+|||++||++||++||++||+||+|+|+||++.+|+||++++.+  .++|.+||+|.. .....
T Consensus        83 ~-~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~s~y~~~y~~~~~~~~~~  161 (488)
T 2wc7_A           83 S-NHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPWVNWFKIEGWPLSPY  161 (488)
T ss_dssp             T-TCTTSEEEEEEECGGGTHHHHHHHHHHHHHHTTCEEEEEECCSBCCSSSHHHHHHHHHGGGCTTGGGBCBCSSSCCSS
T ss_pred             C-CCCCCCcCccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCcCCCcCHHHHHHHhcCCCCCCCCceeecCCCCCCC
Confidence            5 6999999999999999999999999999999999999999999999999999998753  578999999865 21111


Q ss_pred             C---cceeecccccCCCCCCCCcchhhHH
Q psy8670         168 V---GAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       168 ~---~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      .   ...|....+...++|+|++||++++
T Consensus       162 ~~~~~~~~~~~~~~~~~pdln~~np~vr~  190 (488)
T 2wc7_A          162 NGEFPANYVGWAGNRALPEFNHDNPEVRE  190 (488)
T ss_dssp             CTTSCCCBCBGGGCTTSBBBCTTSHHHHH
T ss_pred             CCCCCCCccccCCCCCcCeeccCCHHHHH
Confidence            1   1245444455678999999999886

>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*

Probab=100.00  E-value=4.8e-38  Score=284.92  Aligned_cols=151  Identities=33%  Similarity=0.636  Sum_probs=135.1

Q ss_pred             ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHH
Q psy8670          41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKER  120 (224)
Q Consensus        41 ~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~  120 (224)
                      .+||||++++|+++++++.|+|+|++++| +|||+||||+|||+||++++. ++||++.||++|||+|||++||++||++
T Consensus         1 ~viYei~~~~F~~~~~~g~Gd~~gi~~~L-dyL~~LGv~~I~L~Pi~~~~~-~~GY~~~dy~~idp~~Gt~~df~~lv~~   78 (441)
T 1lwj_A            1 MIGYQIYVRSFRDGNLDGVGDFRGLKNAV-SYLKELGIDFVWLMPVFSSIS-FHGYDVVDFYSFKAEYGSEREFKEMIEA   78 (441)
T ss_dssp             CCEEEECHHHHCCSSSSSSCCHHHHHHTH-HHHHHTTCCEEEECCCEECSS-SSCCSCSEEEEECTTTCCHHHHHHHHHH
T ss_pred             CeEEEEehHHhcCCCCCCccCHHHHHHhh-HHHHHcCCCEEEeCCCcCCCC-CCCCCcccccccCcccCCHHHHHHHHHH
Confidence            48999999999999999999999999999 999999999999999999984 6999999999999999999999999999


Q ss_pred             HHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhccc-------CCC--------cceeecccccCCCCCCC
Q psy8670         121 LHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHD-------LGV--------GAVWISPIFKSPMADFG  185 (224)
Q Consensus       121 ~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~-------lG~--------~~~w~~p~f~~~~~dln  185 (224)
                      ||++||+||+|+|+||++.+|+||++++...++|.+||+|.+...       .|.        +..|+...|...++|+|
T Consensus        79 aH~~Gi~VilD~V~NH~~~~~~~f~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~w~~~~~~~~y~~~f~~~~pdln  158 (441)
T 1lwj_A           79 FHDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLN  158 (441)
T ss_dssp             HHHTTCEEEEEECTTBCCTTCHHHHHHHTTCHHHHTTBCBCCTTSCTTCBCSSSCCBCEEECTTSCEEECTTCTTSCBBC
T ss_pred             HHHCCCEEEEEeCCCcccCchHHHHHHhccCCCCcceeeecCCCCCCcccccCCCccccccccCCceEEcccCCCCCccC
Confidence            999999999999999999999999998877778999999875321       111        23455566777889999


Q ss_pred             CcchhhHH
Q psy8670         186 YDISDYLR  193 (224)
Q Consensus       186 y~n~d~~~  193 (224)
                      ++||++++
T Consensus       159 ~~np~V~~  166 (441)
T 1lwj_A          159 YDNPQVFD  166 (441)
T ss_dssp             SSSHHHHH
T ss_pred             CCCHHHHH
Confidence            99999876

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=100.00  E-value=2.2e-38  Score=299.51  Aligned_cols=160  Identities=30%  Similarity=0.483  Sum_probs=133.5

Q ss_pred             CCCCccCCCceEEEEecccccCcCC-CC---------CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCC
Q psy8670          32 QEPLEWWQTSVFYHLYPRSFKDSNG-DG---------VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDY  101 (224)
Q Consensus        32 ~~~~~w~~~~viY~i~~~~f~~~~~-~~---------~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~  101 (224)
                      ...|+||+++|||||+|++|+++++ ++         +|||+||+++| +|||+||||+|||+||++++. +|||++.||
T Consensus       198 ~~~P~W~~~aViYqI~p~~F~~~~~~~g~~~~~~~~~gGdl~Gi~~kL-dYLk~LGvt~I~L~Pif~s~~-~~GYd~~dy  275 (645)
T 4aef_A          198 IEFPTWVIDRVFYQIMPDKFARSRKIQGIAYPKDKYWGGDLIGIKEKI-DHLVNLGINAIYLTPIFSSLT-YHGYDIVDY  275 (645)
T ss_dssp             CCCCGGGGGCCEEEECHHHHCCCSSCC---------CCCCHHHHHHTH-HHHHHHTCCEEEECCCEEESS-TTCSSEEEE
T ss_pred             CCCChhHcCCEEEEEecchhcCCCCCCcccCCcCcCCCcCHHHHHHhh-HHHHHcCCCEEEECCCCCCCC-CCCcCccCC
Confidence            3567999999999999999998875 22         49999999999 999999999999999999884 699999999


Q ss_pred             CCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC--CCCccccccchhcccCCC--------cce
Q psy8670         102 LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN--IPPYKCASLLARLHDLGV--------GAV  171 (224)
Q Consensus       102 ~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~--~~~~~~~f~w~~~~~lG~--------~~~  171 (224)
                      ++|||+|||++||++||++||++||+||+|+|+||||.+|+||++....  .++|.+||.+.+......        +..
T Consensus       276 ~~idp~~Gt~~df~~LV~~aH~~GI~VIlD~V~NHts~~h~wf~~~~~~~~~s~~~d~y~~~~~~~~~~~~~~~~~~~~~  355 (645)
T 4aef_A          276 FHVARRLGGDRAFVDLLSELKRFDIKVILDGVFHHTSFFHPYFQDVVRKGENSSFKNFYRIIKFPVVSKEFLQILHSKSS  355 (645)
T ss_dssp             EEECGGGTCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHHSTTCTTGGGBCBSSSSCSCTTHHHHHHHSCG
T ss_pred             CccCcccCCHHHHHHHHHHhhhcCCEEEEEecccccccCCchhhhHhhcCCCCCcccccEeccCCCcccccccccCCCcc
Confidence            9999999999999999999999999999999999999999999998743  688999998755321110        001


Q ss_pred             -------------eeccccc-CCCCCCCCcchhhHH
Q psy8670         172 -------------WISPIFK-SPMADFGYDISDYLR  193 (224)
Q Consensus       172 -------------w~~p~f~-~~~~dlny~n~d~~~  193 (224)
                                   ++...+. ..++|||++|+++++
T Consensus       356 w~~~~~~~~~~~~~y~~~~~~~~~pdLn~~np~V~~  391 (645)
T 4aef_A          356 WEEKYKKIKSLGWNYESFFSVWIMPRLNHDNPKVRE  391 (645)
T ss_dssp             GGTTHHHHHHHCCSBCEETTEEEEEBBCTTSHHHHH
T ss_pred             cccccccccccccccccccccccCccccccCHHHHH
Confidence                         1111222 247899999999886

>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=6e-37  Score=279.84  Aligned_cols=156  Identities=26%  Similarity=0.461  Sum_probs=133.8

Q ss_pred             ccCCCceEEEEecccc-cCcCCC----C----------------CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCC
Q psy8670          36 EWWQTSVFYHLYPRSF-KDSNGD----G----------------VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF   94 (224)
Q Consensus        36 ~w~~~~viY~i~~~~f-~~~~~~----~----------------~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~   94 (224)
                      +||++++||||+|++| .++++.    +                .|+|+|++++| +|||+||||+|||+||++++. ++
T Consensus         2 ~W~~~~viYqi~~~~F~~~gd~~~~~~g~~~~~~~~~~~~~~~~~G~~~gi~~~L-dyL~~LGv~~I~l~Pi~~~~~-~~   79 (475)
T 2z1k_A            2 AWYEGAFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTLWGVAEKL-PYLLDLGVEAIYLNPVFASTA-NH   79 (475)
T ss_dssp             CTTSSCCEEEECGGGSCCCSCCCSSCCCSCCCCTTSCCCSSCCCCCCHHHHHHTH-HHHHHHTCCEEEECCCEEESS-TT
T ss_pred             CcccCceEEEEccCeecCCCCcccCCCccccccccCCCCccccCCCCHHHHHHHh-HHHHHcCCCEEEECCCcCCCC-CC
Confidence            6999999999999999 665521    3                69999999999 999999999999999999875 69


Q ss_pred             CCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC--CCCccccccchhcccCC--Ccc
Q psy8670          95 GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN--IPPYKCASLLARLHDLG--VGA  170 (224)
Q Consensus        95 gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~--~~~~~~~f~w~~~~~lG--~~~  170 (224)
                      ||++.||+++||+|||++||++||++||++||+||+|+|+||++.+|+||++.+.+  .++|.+||.+.......  ...
T Consensus        80 gY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~~~y~~~~~~~~~~~~~~  159 (475)
T 2z1k_A           80 RYHTVDYFQVDPILGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWYHVKGFPLKAYTAHP  159 (475)
T ss_dssp             CCSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBCSSSCCTTSSSC
T ss_pred             CcCCCCcCccCcccCCHHHHHHHHHHHHHCCCEEEEEEecccccCCCHHHHHHHhcCCCCCCcceeecCCCCCcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999988753  57899999876521111  123


Q ss_pred             eeecccccCCCCCCCCcchhhHH
Q psy8670         171 VWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       171 ~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      .|....+...++|+|++||++++
T Consensus       160 ~y~~~~~~~~~pdln~~np~v~~  182 (475)
T 2z1k_A          160 NYEAWWGNPELPKLKVETPAVRE  182 (475)
T ss_dssp             SBCBGGGCTTSBBBCTTSHHHHH
T ss_pred             CccccCCCCCcCccccCCHHHHH
Confidence            45554555678999999999876

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=100.00  E-value=1.6e-37  Score=295.95  Aligned_cols=169  Identities=30%  Similarity=0.472  Sum_probs=142.7

Q ss_pred             CCCCCccCCCceEEEEecccccCcCC---------------C--CCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCC
Q psy8670          31 IQEPLEWWQTSVFYHLYPRSFKDSNG---------------D--GVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD   93 (224)
Q Consensus        31 ~~~~~~w~~~~viY~i~~~~f~~~~~---------------~--~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~   93 (224)
                      ....++||+++|||||+|++|+++++               +  .+|+|+|++++| +|||+||||+|||+||++++. +
T Consensus       216 ~~~~p~W~~~~viYqI~p~rF~~~~~~n~~~~~~~w~~~~~~~~~gGdl~Gi~~kL-dyLk~LGvt~IwL~Pi~~s~~-~  293 (696)
T 4aee_A          216 GVDKPRWYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDLAGIMKHI-DHLEDLGVETIYLTPIFSSTS-Y  293 (696)
T ss_dssp             BCSSCCTTSSCCEEEECGGGTCCCCGGGCCSSCCCCCSSCCSSCCCCCHHHHHTTH-HHHHHHTCCEEEECCCEEESS-S
T ss_pred             CCCCcchhhcCeEEEEehHHhcCCCCCCCccccccccCCcccccCCcCHHHHHHHh-HHHHHcCCCEEEECCcccCCC-C
Confidence            34678999999999999999998762               1  479999999999 999999999999999999985 5


Q ss_pred             CCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhc-C-CCCccccccchhcccC-----
Q psy8670          94 FGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLA-N-IPPYKCASLLARLHDL-----  166 (224)
Q Consensus        94 ~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~-~-~~~~~~~f~w~~~~~l-----  166 (224)
                      +||++.||++|||+|||++||++||++||++||+||+|+|+||+|.+|+||+++.. + .++|.+||+|.+....     
T Consensus       294 ~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~GikVilD~V~NHts~~~~~f~~~~~~~~~s~y~dwy~~~~~~~~~~~~~  373 (696)
T 4aee_A          294 HRYDTIDYKSIDKYLGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNELFVKALREGENSPYWEMFSFLSPPPKEIVEL  373 (696)
T ss_dssp             SCCSEEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECSSEECTTSHHHHHHHHHCTTSTTGGGBCBCSCCCHHHHHH
T ss_pred             CCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEeccccccCccCHHHHHHHhcCCCCCCCCceEecCCCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999874 3 6899999998652210     


Q ss_pred             ----------------------CCcceeecccccCCCCCCCCcchhhHH--HHHHHhhc
Q psy8670         167 ----------------------GVGAVWISPIFKSPMADFGYDISDYLR--IKILLDFV  201 (224)
Q Consensus       167 ----------------------G~~~~w~~p~f~~~~~dlny~n~d~~~--i~ii~d~v  201 (224)
                                            +....|....|...++|||++|+++++  +.++..++
T Consensus       374 ~~~~~~~~~~~s~~~~~~~~~~~~~~~y~~~~~~~~~pdLN~~np~Vr~~i~~~~~~Wl  432 (696)
T 4aee_A          374 MLKYIDGEECRSRELYKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFIDITKFWI  432 (696)
T ss_dssp             HHHHHSSSSCCGGGGGGSHHHHHSCCSBCBGGGCTTCEEBCTTCHHHHHHHHHHHHHHH
T ss_pred             cccccCCCccccccccccccccCCCCceeeecCCCCchhhcCCCHHHHHHHHHHHHHHH
Confidence                                  012345555566788999999999887  34444333

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=100.00  E-value=1.6e-35  Score=277.37  Aligned_cols=159  Identities=30%  Similarity=0.557  Sum_probs=137.8

Q ss_pred             CCCccCCCceEEEEecccccCcCCC-------------------CCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCC
Q psy8670          33 EPLEWWQTSVFYHLYPRSFKDSNGD-------------------GVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD   93 (224)
Q Consensus        33 ~~~~w~~~~viY~i~~~~f~~~~~~-------------------~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~   93 (224)
                      .+++|+++++||||+|++|+++++.                   ..|+|+|++++| +|||+||||+|||+||++++. +
T Consensus       127 ~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~~~G~~~gi~~~L-dyLk~LGvt~I~L~Pi~~~~~-~  204 (588)
T 1j0h_A          127 EAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHL-DYLVDLGITGIYLTPIFRSPS-N  204 (588)
T ss_dssp             CCCGGGGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTH-HHHHHHTCCEEEECCCEECSS-S
T ss_pred             CCCccccccEEEEEcchhhcCCCCCcCcccccccCCCCCcccccCCCCHHHHHHHH-HHHHHcCCCEEEECCcccCCC-C
Confidence            4678999999999999999876521                   258999999999 999999999999999999875 6


Q ss_pred             CCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC--CCCccccccchhccc-CCCcc
Q psy8670          94 FGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN--IPPYKCASLLARLHD-LGVGA  170 (224)
Q Consensus        94 ~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~--~~~~~~~f~w~~~~~-lG~~~  170 (224)
                      |||++.||+++||+|||++||++||++||++||+||+|+|+||++.+++||++.+..  .++|.+||.+..... ..+..
T Consensus       205 ~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~dwy~~~~~~~~~~~~~  284 (588)
T 1j0h_A          205 HKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRP  284 (588)
T ss_dssp             SCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSSC
T ss_pred             CCcCccccCccCccCCCHHHHHHHHHHHHHCCCEEEEEECcCcCcccchhHHHHHhcCCCCCcccccccccCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999988753  689999998764211 11234


Q ss_pred             eeecccccCCCCCCCCcchhhHH
Q psy8670         171 VWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       171 ~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      .|.+..|...++++|+.|+++++
T Consensus       285 ~y~~~~~~~~~pdLn~~np~Vr~  307 (588)
T 1j0h_A          285 NYDTFAFVPQMPKLNTANPEVKR  307 (588)
T ss_dssp             SBCBSTTCTTSBBBCTTSHHHHH
T ss_pred             CeEEecCCCCccccccCCHHHHH
Confidence            56665666678999999999887

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=100.00  E-value=2.4e-35  Score=276.03  Aligned_cols=159  Identities=32%  Similarity=0.556  Sum_probs=134.9

Q ss_pred             CCCccCCCceEEEEecccccCcC-----------CC---------CCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCC
Q psy8670          33 EPLEWWQTSVFYHLYPRSFKDSN-----------GD---------GVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA   92 (224)
Q Consensus        33 ~~~~w~~~~viY~i~~~~f~~~~-----------~~---------~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~   92 (224)
                      +.++|+++++||||++++|.+++           +.         ..|+|+|++++| +|||+||||+|||+||++++. 
T Consensus       123 ~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~f~~G~~~gi~~~L-dyLk~LGvt~I~L~Pi~~~~~-  200 (585)
T 1wzl_A          123 TTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRL-PYLEELGVTALYFTPIFASPS-  200 (585)
T ss_dssp             CCCSGGGGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTH-HHHHHHTCCEEEECCCEECSS-
T ss_pred             CCcchhccceEEEEcchhhcCCCcccccccccccCccCCCcccccCCCCHHHHHHHh-HHHHHcCCCEEEECCcccCCC-
Confidence            56789999999999999997655           11         258999999999 999999999999999999885 


Q ss_pred             CCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC--CCCccccccchhcc-cCCCc
Q psy8670          93 DFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN--IPPYKCASLLARLH-DLGVG  169 (224)
Q Consensus        93 ~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~--~~~~~~~f~w~~~~-~lG~~  169 (224)
                      +|||++.||+++||+|||++||++||++||++||+||+|+|+||++.+++||++.+.+  .++|.+||.+.... .....
T Consensus       201 ~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~~~y~~~~~~~~~~~~  280 (585)
T 1wzl_A          201 HHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR  280 (585)
T ss_dssp             SSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSC
T ss_pred             CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcCCcCCCccHHHHHHHhcCCCCCccCceEecCCCCCCCCC
Confidence            6999999999999999999999999999999999999999999999999999998853  68999999876521 11112


Q ss_pred             ceeeccc-ccCCCCCCCCcchhhHH
Q psy8670         170 AVWISPI-FKSPMADFGYDISDYLR  193 (224)
Q Consensus       170 ~~w~~p~-f~~~~~dlny~n~d~~~  193 (224)
                      ..|..-. +...++++|+.|+++++
T Consensus       281 ~~y~~~~~~~~~~pdln~~~~~vr~  305 (585)
T 1wzl_A          281 TNYETFAVQVPAMPKLRTENPEVKE  305 (585)
T ss_dssp             CSBCBSSSSCTTCBBBCTTSHHHHH
T ss_pred             CCeeEcccCCCCCCeeCcCCHHHHH
Confidence            2344333 44568999999999886

>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A*

Probab=100.00  E-value=2.8e-35  Score=279.09  Aligned_cols=119  Identities=42%  Similarity=0.777  Sum_probs=115.6

Q ss_pred             ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHH
Q psy8670          41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKER  120 (224)
Q Consensus        41 ~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~  120 (224)
                      .+||||++++|+++++++.|+|++++++| +||++|||++|||+||++++.. +||++.||++|+|+|||++||++||++
T Consensus        38 ~viY~i~~~~f~~~~~~~~G~~~g~~~~l-~yl~~lGv~~i~l~Pi~~~~~~-~gY~~~dy~~i~~~~Gt~~d~~~lv~~  115 (669)
T 3k8k_A           38 DISYQLLLYSFADSDGDGYGDLNGVTQKL-DYLNQLGVKALWLSPIHPCMSY-HGYDVTDYTKVNPQLGTESDFDRLVTE  115 (669)
T ss_dssp             CCEEEECTTTSCCSSSSSSCCHHHHHTTH-HHHHTTTCSEEEECCCSSBSST-TCCSBSCTTSCCTTTCCHHHHHHHHHH
T ss_pred             cEEEEEEhHHhcCCCCCCCcCHHHHHHHH-HHHHHcCCCEEEecccccCCCC-CCCCcccccccccccCCHHHHHHHHHH
Confidence            99999999999999999999999999999 9999999999999999999854 999999999999999999999999999


Q ss_pred             HHHcCCEEEEecCCCCCCccchhHHhhhcC-CCCccccccch
Q psy8670         121 LHALGIKILLDFVPNHTSNQHEWFKKSLAN-IPPYKCASLLA  161 (224)
Q Consensus       121 ~h~~gi~vilD~v~nh~~~~~~w~~~~~~~-~~~~~~~f~w~  161 (224)
                      ||++||+||+|+|+||++.+|+||++++.+ .++|.+||+|.
T Consensus       116 ~h~~gi~vi~D~V~NH~~~~~~wf~~~~~~~~~~y~d~y~~~  157 (669)
T 3k8k_A          116 AHNRGIKIYLDYVMNHTGTAHPWFTEASSSSESPYRNYYSFS  157 (669)
T ss_dssp             HHHTTCEEEEEECCSEEETTSHHHHHHHHCTTSTTGGGBCEE
T ss_pred             HHHcCCEEEEEECcccCCCcCHHHHHHhhCCCCCccceeEEC
Confidence            999999999999999999999999999977 78999999998

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=100.00  E-value=9.5e-35  Score=271.91  Aligned_cols=160  Identities=31%  Similarity=0.536  Sum_probs=135.4

Q ss_pred             CCCCccCCCceEEEEecccccCcCC-----------C--------CCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCC
Q psy8670          32 QEPLEWWQTSVFYHLYPRSFKDSNG-----------D--------GVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA   92 (224)
Q Consensus        32 ~~~~~w~~~~viY~i~~~~f~~~~~-----------~--------~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~   92 (224)
                      .+.++|+++++||||++++|.+++.           .        ..|+|+|++++| +|||+||||+|||+||++++. 
T Consensus       122 ~~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~~~Gd~~gi~~~L-dyLk~LGvt~I~L~Pi~~~~~-  199 (583)
T 1ea9_C          122 FQPPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHL-DHLSKLGVNAVYFTPLFKATT-  199 (583)
T ss_dssp             CCCCTHHHHCCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTH-HHHHHHTCSEEEECCCSSCSS-
T ss_pred             CCCCcccccceEEEEchHHhcCCCCccCccccccccCCCCcccccCCcCHHHHHHhh-HHHHHcCCCEEEECCCccCCC-
Confidence            3567899999999999999976551           1        158999999999 999999999999999999885 


Q ss_pred             CCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC--CCCccccccchhcccC-C-C
Q psy8670          93 DFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN--IPPYKCASLLARLHDL-G-V  168 (224)
Q Consensus        93 ~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~--~~~~~~~f~w~~~~~l-G-~  168 (224)
                      +|||++.||+++||+|||++||++||++||++||+||+|+|+||++.+++||++.+.+  .++|.+||.+...... + .
T Consensus       200 ~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~~~y~~~~~~~~~~~~  279 (583)
T 1ea9_C          200 NHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDG  279 (583)
T ss_dssp             SSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTHHHHHHHTTTTTCTTTTSSCBCSSSCCCTTS
T ss_pred             CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEccccCCCccHHHHHHHhcCCCCCccCceEecCCCCCCCCC
Confidence            6999999999999999999999999999999999999999999999999999998864  6799999987652110 1 1


Q ss_pred             cceeecccccCCCCCCCCcchhhHH
Q psy8670         169 GAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       169 ~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      ...|....+...+|++|+.|+++++
T Consensus       280 ~~~y~~~~~~~~~pdln~~~p~Vr~  304 (583)
T 1ea9_C          280 IPTYDTFAFEPLMPKLNTEHPDVKE  304 (583)
T ss_dssp             CCSBCBSSSCTTSBBCCTTSHHHHH
T ss_pred             CCCceecCCCCCcceeccCCHHHHH
Confidence            1234443344568999999999876

>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A

Probab=100.00  E-value=3e-35  Score=278.18  Aligned_cols=152  Identities=27%  Similarity=0.449  Sum_probs=135.4

Q ss_pred             CCccCCC--ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC--CCCCCCccCCCCcCCCCC
Q psy8670          34 PLEWWQT--SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM--ADFGYDISDYLSFEPLFG  109 (224)
Q Consensus        34 ~~~w~~~--~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~v~~~~G  109 (224)
                      .+.||++  .+|||+++++|.       |+|++++++| +|||+||||+|||+|+++++.  .++||++.||++|||+||
T Consensus        82 ~~~W~~~~~~viY~i~~~~F~-------Gdl~gi~~~L-dyL~~LGv~~I~L~Pi~~~~~~~~~~GY~~~dy~~vdp~~G  153 (644)
T 3czg_A           82 HAGWFGQPHMLGYSAYADRFA-------GTLQGVAERV-PYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLG  153 (644)
T ss_dssp             CTTGGGSTTCCEEEECHHHHH-------SSHHHHHHTH-HHHHHHTCCEEEECCCBCBCSSCCTTTTSBSCTTSBCGGGC
T ss_pred             CCccccCCCcEEEEEechhhC-------CCHHHHHHHH-HHHHHcCCCEEEeCCCCcCCCCCCCCCcCcccccccCcccC
Confidence            5689988  899999999995       8999999999 999999999999999999874  579999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhccc-------------C----------
Q psy8670         110 DLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHD-------------L----------  166 (224)
Q Consensus       110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~-------------l----------  166 (224)
                      |++||++||++||++||+||+|+|+||+|.+|+||+++..++++|.+||+|.+...             .          
T Consensus       154 t~~df~~Lv~~aH~~GI~VilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~p~~~~~~~~~~f~~~~~~~~~~~  233 (644)
T 3czg_A          154 SNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPDRYEATLGQVFPHTAPGNFTWV  233 (644)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCHHHHTTBCEESSSHHHHHHHHHCCCC------CCEEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEEecCCcccchhhHHHHhcCCCcccCceecCCCCCCCcchhhcccccCCCCCCCCcccc
Confidence            99999999999999999999999999999999999999888889999999854210             0          


Q ss_pred             CCcceeecccccCCCCCCCCcchhhHH
Q psy8670         167 GVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       167 G~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      ...+.|+...|...++|+||+||++++
T Consensus       234 ~~~~~~~~~~f~~~~pdLN~~np~V~~  260 (644)
T 3czg_A          234 DDTAQWMWTTFYPYQWDLNWSNPAVFG  260 (644)
T ss_dssp             TTTTEEEECSSSTTEEEBCTTSHHHHH
T ss_pred             CCCCceEecccccCCCcCCCCCHHHHH
Confidence            012456777788888999999999886

>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A*

Probab=100.00  E-value=3.6e-35  Score=276.90  Aligned_cols=153  Identities=31%  Similarity=0.539  Sum_probs=135.0

Q ss_pred             CCCccCCC--ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC--CCCCCCccCCCCcCCCC
Q psy8670          33 EPLEWWQT--SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM--ADFGYDISDYLSFEPLF  108 (224)
Q Consensus        33 ~~~~w~~~--~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~v~~~~  108 (224)
                      ..++||++  .+|||+++++|.       |+|++++++| +||++||||+|||+|+++++.  .++||++.||++|||+|
T Consensus        88 ~~~~W~~~~~~viY~~~~~~f~-------Gdl~gi~~~L-dyL~~LGv~~I~L~Pi~~~~~~~~~~GY~v~dy~~vdp~~  159 (628)
T 1g5a_A           88 NNPDWILSNKQVGGVCYVDLFA-------GDLKGLKDKI-PYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPAL  159 (628)
T ss_dssp             TCGGGGGCTTCCEEEECHHHHH-------SSHHHHHTTH-HHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBCTTT
T ss_pred             cCcccccCCCcEEEEEchhhhC-------CCHHHHHHHH-HHHHHcCCCEEEeCCCCCCCCCCCCCCcCCcccCCcCccC
Confidence            34689987  799999999994       8999999999 999999999999999999874  57999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhccc-------------CC--Cc----
Q psy8670         109 GDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHD-------------LG--VG----  169 (224)
Q Consensus       109 G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~-------------lG--~~----  169 (224)
                      ||++||++||++||++||+||+|+|+||+|.+|+||+++..++++|.+||+|.+...             .+  .+    
T Consensus       160 Gt~~d~~~Lv~~ah~~GI~VilD~V~NH~s~~~~wf~~~~~g~~~y~d~y~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~  239 (628)
T 1g5a_A          160 GTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGGFSQ  239 (628)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCGGGTTSBCEESSSHHHHHHTTTCCCSSTTTCSTTEEE
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEEecCcccccchhHHHHhcCCCccccccccCCCCCCcccccccccccCCCCCCCcccc
Confidence            999999999999999999999999999999999999999888889999999854210             00  00    


Q ss_pred             ---ceeecccccCCCCCCCCcchhhHH
Q psy8670         170 ---AVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       170 ---~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                         +.|+...|...++|+||+||++++
T Consensus       240 ~~~~~~~~~~f~~~~pdLN~~np~V~~  266 (628)
T 1g5a_A          240 LEDGRWVWTTFNSFQWDLNYSNPWVFR  266 (628)
T ss_dssp             CTTSCEEECSSSTTEEEBCTTSHHHHH
T ss_pred             CCCCCEEeccCCCCCCccCCCCHHHHH
Confidence               356667787888999999999887

>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A

Probab=100.00  E-value=7.2e-34  Score=266.81  Aligned_cols=155  Identities=21%  Similarity=0.371  Sum_probs=129.1

Q ss_pred             CCCccCCCceEEEEecccccCcCCC-------------------CCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC--
Q psy8670          33 EPLEWWQTSVFYHLYPRSFKDSNGD-------------------GVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM--   91 (224)
Q Consensus        33 ~~~~w~~~~viY~i~~~~f~~~~~~-------------------~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~--   91 (224)
                      ....|+++.|||||++++|++++++                   .+|||+|++++| +||++||||+|||+||++++.  
T Consensus        99 ~~~~~~~~~viY~i~~drF~~gd~~nd~~~~~~~~~~~~~~~~~~gGdl~gi~~~L-dyl~~LGv~aI~l~Pi~~~~~~~  177 (601)
T 3edf_A           99 QRQGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHL-DYIAGLGFTQLWPTPLVENDAAA  177 (601)
T ss_dssp             TCCCCCTTCCEEEECHHHHCCSCGGGSSCTTCSCCCCTTSTTSCCCCCHHHHHHTH-HHHHHTTCCEEEESCCEECCCSS
T ss_pred             ccCCCCccCeEEEEehHHhcCCCCCcCcCcCcccccCccccccccCcCHHHHHHHH-HHHHHcCCCEEEECccccCCCCC
Confidence            4467999999999999999887643                   469999999999 999999999999999999863  


Q ss_pred             -CCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccC----
Q psy8670          92 -ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDL----  166 (224)
Q Consensus        92 -~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~l----  166 (224)
                       .+|||++.||++|||+|||++||++||++||++||+||+|+|+||++.+|+||+     +.++.+||.+.++...    
T Consensus       178 ~~~~GY~~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~-----~~p~~dw~~~~~~~~~~~~~  252 (601)
T 3edf_A          178 YSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMK-----DLPTPDWINYGGKFVPTQHH  252 (601)
T ss_dssp             SGGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSGGGG-----SCSSTTSBGGGGSCCBCCCC
T ss_pred             CCCCCcCccccccccccCCCHHHHHHHHHHHHHcCCEEEEEECCcccCCcchhhh-----hCCccCceeeCCCCCCCccc
Confidence             349999999999999999999999999999999999999999999999999997     3578899987532110    


Q ss_pred             -----CC-cce-----eecccccCCCCCCCCcchhhHH
Q psy8670         167 -----GV-GAV-----WISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       167 -----G~-~~~-----w~~p~f~~~~~dlny~n~d~~~  193 (224)
                           ++ ...     .....|...++|||++||++++
T Consensus       253 ~~~~~d~~~~~~~~~~~~~~wf~~~lpdLN~~np~V~~  290 (601)
T 3edf_A          253 RVAVQDPYAAQADSENFTKGWFVEGMPDLNQTNPLVAN  290 (601)
T ss_dssp             GGGGGCTTCCHHHHHHHHHSBSSTTSCBBCTTSHHHHH
T ss_pred             cccccCCCCccccccccccccccccccccccCCHHHHH
Confidence                 00 000     0112345678999999999886

>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A*

Probab=100.00  E-value=3.5e-34  Score=271.34  Aligned_cols=153  Identities=30%  Similarity=0.521  Sum_probs=135.6

Q ss_pred             CCCccCCCc--eEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC--CCCCCCCccCCCCcCCCC
Q psy8670          33 EPLEWWQTS--VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLF  108 (224)
Q Consensus        33 ~~~~w~~~~--viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~--~~~~gY~~~d~~~v~~~~  108 (224)
                      ..+.||+++  +|||+|+++|.       |+|++++++| +||++||||+|||+|+++++  ..++||+|.||++|+|+|
T Consensus        86 ~~~~W~~~~~~viY~~~~~~f~-------G~~~gl~~~L-dyL~~lGv~~v~l~P~~~~~~~~~~~GY~~~dy~~i~~~~  157 (655)
T 3ucq_A           86 LRPDWLQRPEMVGYVAYTDRFA-------GTLKGVEERL-DYLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVRPDL  157 (655)
T ss_dssp             HCTTGGGSTTCCEEEECHHHHH-------SSHHHHHTTH-HHHHHTTCCEEEECCCEEECSSCCGGGTSEEEEEEECGGG
T ss_pred             cCCCcccCCceEEEEEehhhhC-------CCHHHHHHhh-HHHHHcCCCEEEECCCcCCCCCCCCCCcCCcCcCccCccC
Confidence            356899997  99999999995       8999999999 99999999999999999985  367999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhccc---------------C-------
Q psy8670         109 GDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHD---------------L-------  166 (224)
Q Consensus       109 G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~---------------l-------  166 (224)
                      ||++||++||++||++||+||+|+|+||+|.+|+||++++.++++|.+||+|.+...               .       
T Consensus       158 Gt~~d~~~lv~~~h~~Gi~Vi~D~V~NH~s~~~~wf~~~~~~~~~~~d~y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  237 (655)
T 3ucq_A          158 GTMDDLSALARALRGRGISLVLDLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDRRGPDAFEATLPEIFPDFAPGNFSW  237 (655)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCHHHHTTBCEESSSHHHHHHHTTCCCSCTTTSCSSEEE
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEeeccccccchHHHHHhhcCCCCCcccEEEcCCCCCCccccccCccccccCCCCcccc
Confidence            999999999999999999999999999999999999999988889999997532110               0       


Q ss_pred             -----CCcceeecccccCCCCCCCCcchhhHH
Q psy8670         167 -----GVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       167 -----G~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                           +..+.|+...|...++||||+||++++
T Consensus       238 ~~~~~~~~~~~~~~~f~~~qpDLn~~np~V~~  269 (655)
T 3ucq_A          238 DEEIGEGEGGWVWTTFNSYQWDLNWANPDVFL  269 (655)
T ss_dssp             ETTSSSSSCEEEECSSSTTEEEBCTTSHHHHH
T ss_pred             cccccccCCceEeccccCCCCccCCCCHHHHH
Confidence                 014567777788888999999999987

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=100.00  E-value=5e-34  Score=269.44  Aligned_cols=154  Identities=28%  Similarity=0.552  Sum_probs=129.9

Q ss_pred             CCCccCCCceEEEEecccccCcCCC-------------------------------C-----CCCHHHHHHHHHHHHHH-
Q psy8670          33 EPLEWWQTSVFYHLYPRSFKDSNGD-------------------------------G-----VGDLKGMIEKLPEHLHD-   75 (224)
Q Consensus        33 ~~~~w~~~~viY~i~~~~f~~~~~~-------------------------------~-----~g~l~~~~~~l~~~l~~-   75 (224)
                      ..+.||++++||||++++|++++++                               +     .|+|+|++++| +|||+ 
T Consensus       125 ~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~f~gG~~~gi~~~L-dyLk~~  203 (637)
T 1ji1_A          125 KTPDWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFGGDLAGIDQKL-GYIKKT  203 (637)
T ss_dssp             CCCHHHHHCCEEEECGGGTCCSCGGGCCCTTSCEETTEECEECCTTSCCSCCTTSCGGGEECCCCHHHHHHTH-HHHHTT
T ss_pred             CCCchhhCCcEEEEecccccCCCCcccccccccccccccccccccccCcccccccCCcccccCcCHHHHHHhH-HHHHhc
Confidence            4578999999999999999876542                               1     28999999999 99999 


Q ss_pred             cCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcC--C--EEEEecCCCCCCccchhHHhhhc--
Q psy8670          76 LGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALG--I--KILLDFVPNHTSNQHEWFKKSLA--  149 (224)
Q Consensus        76 lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~g--i--~vilD~v~nh~~~~~~w~~~~~~--  149 (224)
                      ||||+|||+||++++. +|||++.||+++||+|||++||++||++||++|  |  +||+|+|+||++.+|+||.....  
T Consensus       204 LGvt~I~L~Pi~~~~~-~~GYd~~dy~~id~~~Gt~~dfk~LV~~~H~~G~~I~~~VIlD~V~NH~~~~~~~f~~~~~f~  282 (637)
T 1ji1_A          204 LGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHPWFDKYNNFS  282 (637)
T ss_dssp             TCCCEEEESCCEECSS-SSCCSCSEEEEECTTTCCHHHHHHHHHHHHCSSSSSCCEEEEEECCSBCCTTSTTTCTTCCSS
T ss_pred             cCCCEEEECCCccCCC-CCCcCccchhhhccccCCHHHHHHHHHHHHhCCCCccceEEEEECcccCCCCcHHHhhhhccC
Confidence            9999999999999985 699999999999999999999999999999999  9  99999999999999999987654  


Q ss_pred             -------CCCCccccccchhcccCCCcceeecccccCCCCCCCCcch--hhHH
Q psy8670         150 -------NIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDIS--DYLR  193 (224)
Q Consensus       150 -------~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~--d~~~  193 (224)
                             .+++|.+||.|.+..     ..|.+......++++||+|+  ++++
T Consensus       283 ~~g~y~~~~~py~~~y~~~~~~-----~~~~~~~g~~~~pdln~~~p~~~Vr~  330 (637)
T 1ji1_A          283 SQGAYESQSSPWYNYYTFYTWP-----DSYASFLGFNSLPKLNYGNSGSAVRG  330 (637)
T ss_dssp             SCCTTTCTTCTTGGGBCEEETT-----TEECEETTEEEEEBBBCCSTTCHHHH
T ss_pred             ccccccCCCCccccccccCCCC-----CCcccccCCCCcccccccCChHHHHH
Confidence                   257889999876531     12222111124689999999  8654

>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}

Probab=99.98  E-value=9.7e-33  Score=250.47  Aligned_cols=144  Identities=26%  Similarity=0.453  Sum_probs=120.6

Q ss_pred             CCCCccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCC------CCCCCccCCCCcC
Q psy8670          32 QEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA------DFGYDISDYLSFE  105 (224)
Q Consensus        32 ~~~~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~------~~gY~~~d~~~v~  105 (224)
                      +.++.||++++|||+++++|++     .|+|++++++| +||++||||+|||+|+++++..      .+||++.||+++|
T Consensus         4 ~~~~~w~~~~viYei~~~~f~~-----~G~~~~i~~~l-~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~gY~~~dy~~i~   77 (449)
T 3dhu_A            4 RDTQTQLRNEMIYSVFVRNYSE-----AGNFAGVTADL-QRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGIN   77 (449)
T ss_dssp             ---CGGGGGCCEEEECHHHHSS-----SCSHHHHHTTH-HHHHHHTCSEEEECCCSCBCSTTCCTTTCCTTSBSCTTSCC
T ss_pred             CCCchhhhcCEEEEEEhhhhCC-----CCCHHHHHHhH-HHHHHcCCCEEEECCcccccccCCCCCCCCCcCcccccccC
Confidence            4678999999999999999987     59999999999 9999999999999999987543      2689999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCC
Q psy8670         106 PLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFG  185 (224)
Q Consensus       106 ~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dln  185 (224)
                      |+|||++||++||++||++||+||+|+|+||++.+++|++       .+++||.........   ....  ...+++|||
T Consensus        78 ~~~Gt~~~~~~lv~~~h~~Gi~vi~D~V~NH~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~--~w~~~~dLn  145 (449)
T 3dhu_A           78 PEYGTLADFKALTDRAHELGMKVMLDIVYNHTSPDSVLAT-------EHPEWFYHDADGQLT---NKVG--DWSDVKDLD  145 (449)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTCEEEEEECCSEECTTSHHHH-------HCGGGBCBCTTSCBC---CSST--TCTTCEEBC
T ss_pred             cccCCHHHHHHHHHHHHHCCCEEEEEEccCcCcCccchhh-------cCccceEECCCCCcC---CCCC--CCCCCCccC
Confidence            9999999999999999999999999999999999999998       577888643211110   0011  123579999


Q ss_pred             CcchhhHH
Q psy8670         186 YDISDYLR  193 (224)
Q Consensus       186 y~n~d~~~  193 (224)
                      +.|+++++
T Consensus       146 ~~np~Vr~  153 (449)
T 3dhu_A          146 YGHHELWQ  153 (449)
T ss_dssp             TTSHHHHH
T ss_pred             CCCHHHHH
Confidence            99999886

>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1

Probab=99.98  E-value=8.7e-33  Score=253.06  Aligned_cols=107  Identities=28%  Similarity=0.576  Sum_probs=99.4

Q ss_pred             CccCCCceEEEEecccccCcCCCCC------------CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-------CCCC
Q psy8670          35 LEWWQTSVFYHLYPRSFKDSNGDGV------------GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-------ADFG   95 (224)
Q Consensus        35 ~~w~~~~viY~i~~~~f~~~~~~~~------------g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-------~~~g   95 (224)
                      ++||++.+||||++++|+++++++.            |+|++++++| +|||+||||+|||+||+++..       .+||
T Consensus         3 ~~~w~~~viYqi~~~~F~~~~~~~~~~~~~~~~~~~gG~~~gi~~~L-dyL~~LGv~~I~l~Pi~~~~~~~~~~~~~~~G   81 (484)
T 2aaa_A            3 AASWRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHL-DYIEGMGFTAIWISPITEQLPQDTADGEAYHG   81 (484)
T ss_dssp             HHHHTTCCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHTH-HHHHTTTCCEEEECCCEEECCCCBTTBCSTTS
T ss_pred             hhhhccCcEEEEeCccccCCCCCCCCCCCccccccCCCCHHHHHHHH-HHHHhcCCCEEEeCccccCcccccccCCCCCC
Confidence            4578999999999999999887654            9999999999 999999999999999999753       4599


Q ss_pred             CCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccch
Q psy8670          96 YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE  142 (224)
Q Consensus        96 Y~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~  142 (224)
                      |++.||++|||+|||++||++||++||++||+||+|+|+||++.+++
T Consensus        82 Y~~~dy~~id~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~  128 (484)
T 2aaa_A           82 YWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGN  128 (484)
T ss_dssp             CSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCBSSC
T ss_pred             cCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECcCCcCCCCC
Confidence            99999999999999999999999999999999999999999998765

>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A

Probab=99.97  E-value=2.3e-32  Score=249.79  Aligned_cols=107  Identities=28%  Similarity=0.571  Sum_probs=99.1

Q ss_pred             CccCCCceEEEEecccccCcCCCCC------------CCHHHHHHHHHHHHHHcCCCeEEEcCcccCC-------CCCCC
Q psy8670          35 LEWWQTSVFYHLYPRSFKDSNGDGV------------GDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-------MADFG   95 (224)
Q Consensus        35 ~~w~~~~viY~i~~~~f~~~~~~~~------------g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~-------~~~~g   95 (224)
                      ++||++.+||||++++|+++++++.            |+|++++++| +|||+||||+|||+||+++.       ..+||
T Consensus         3 ~~~w~~~~iYqi~~~~F~~~~~~~~~~~~~~~~~~~gG~~~gi~~~L-dyL~~lGvt~I~l~Pi~~~~~~~~~~~~~~~G   81 (478)
T 2guy_A            3 PADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKL-DYIQGMGFTAIWITPVTAQLPQTTAYGDAYHG   81 (478)
T ss_dssp             HHHHTTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTH-HHHHTTTCCEEEECCCEEECCCCBTTBCCTTS
T ss_pred             chhhccCcEEEEecccccCCCCCCCCCCCCcccccCCCCHHHHHHHH-HHHHhcCCCEEEeCCcccCCccccCCCCCCCC
Confidence            4578999999999999998877654            9999999999 99999999999999999974       24589


Q ss_pred             CCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccch
Q psy8670          96 YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE  142 (224)
Q Consensus        96 Y~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~  142 (224)
                      |++.||++|||+|||++||++||++||++||+||+|+|+||++.+++
T Consensus        82 Y~~~d~~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~  128 (478)
T 2guy_A           82 YWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGA  128 (478)
T ss_dssp             CSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBC
T ss_pred             CCcccccccCccCCCHHHHHHHHHHHHHCCCEEEEEECcccCCCCCC
Confidence            99999999999999999999999999999999999999999998776

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=99.97  E-value=8.5e-32  Score=256.15  Aligned_cols=111  Identities=33%  Similarity=0.596  Sum_probs=100.4

Q ss_pred             CCccCCCceEEEEecccccCcCCC------------C---------CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC--
Q psy8670          34 PLEWWQTSVFYHLYPRSFKDSNGD------------G---------VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--   90 (224)
Q Consensus        34 ~~~w~~~~viY~i~~~~f~~~~~~------------~---------~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~--   90 (224)
                      .+.||++++||||+|++|.+++++            +         .|+|++++++| +|||+||||+|||+||+++.  
T Consensus         2 ~~~~~~~~viYqI~p~~F~d~d~~n~~~~~~~~~~d~~~~~~~~~~gGdl~gi~~kL-dyLk~LGv~aIwL~Pi~~~~~~   80 (686)
T 1qho_A            2 SSASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKL-PYLKQLGVTTIWLSPVLDNLDT   80 (686)
T ss_dssp             TTSCCTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHTH-HHHHHHTCCEEEECCCEEECSS
T ss_pred             CcccCccCcEEEEeccccCCCCcccCcccccccccCCCccccccccCCCHHHHHHhh-HHHHhcCCCEEEECccccCCcc
Confidence            467899999999999999988753            2         39999999999 99999999999999999862  


Q ss_pred             ------CCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccc---hhHH
Q psy8670          91 ------MADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQH---EWFK  145 (224)
Q Consensus        91 ------~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~---~w~~  145 (224)
                            ..+|||++.||++|||+|||++||++||++||++||+||+|+|+||++.+|   +||.
T Consensus        81 ~~~~g~~~~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~GikVilD~V~NHts~~~~~~~~~~  144 (686)
T 1qho_A           81 LAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFA  144 (686)
T ss_dssp             CSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTBTTST
T ss_pred             cccCCCCCcCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccccccccccccc
Confidence                  246899999999999999999999999999999999999999999999887   4554

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=99.97  E-value=3.5e-31  Score=251.81  Aligned_cols=108  Identities=34%  Similarity=0.622  Sum_probs=97.9

Q ss_pred             cCCCceEEEEecccccCcCCC---------C---------CCCHHHHHHHHHH--HHHHcCCCeEEEcCcccCC------
Q psy8670          37 WWQTSVFYHLYPRSFKDSNGD---------G---------VGDLKGMIEKLPE--HLHDLGVGAVWISPIFKSP------   90 (224)
Q Consensus        37 w~~~~viY~i~~~~f~~~~~~---------~---------~g~l~~~~~~l~~--~l~~lG~~~i~l~Pi~~~~------   90 (224)
                      .|++++||||+|++|++++++         +         .|+|+|++++| +  |||+||||+|||+||+++.      
T Consensus        11 ~~~~~viYqi~~~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl~gi~~kL-d~~yLk~LGvtaIwL~Pi~~~~~~~~~~   89 (683)
T 3bmv_A           11 NYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKI-NDGYLTGMGVTAIWIPQPVENIYAVLPD   89 (683)
T ss_dssp             CCTTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHHH-HTSTTGGGTCCEEEECCCEEECCCCEEE
T ss_pred             CCccCcEEEEecccccCCCCCCCCCCcccCCCccccccccCcCHHHHHHhc-CHHHHHHcCCCEEEeCccccCccccccc
Confidence            479999999999999987653         2         39999999999 9  9999999999999999852      


Q ss_pred             ------CCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccc---hhHH
Q psy8670          91 ------MADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQH---EWFK  145 (224)
Q Consensus        91 ------~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~---~w~~  145 (224)
                            ..+|||++.||++|||+|||++||++||++||++||+||+|+|+||++.++   +||.
T Consensus        90 ~g~~g~~~~~GYd~~dy~~idp~~Gt~~dfk~Lv~~aH~~GikVilD~V~NHts~~~~~~~~~~  153 (683)
T 3bmv_A           90 STFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYA  153 (683)
T ss_dssp             TTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTST
T ss_pred             ccccCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcccccccccccCcchh
Confidence                  256999999999999999999999999999999999999999999999887   5553

>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A

Probab=99.97  E-value=3.7e-31  Score=239.03  Aligned_cols=107  Identities=30%  Similarity=0.662  Sum_probs=100.2

Q ss_pred             CCCCccCCCceEEEEe-cccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCC
Q psy8670          32 QEPLEWWQTSVFYHLY-PRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGD  110 (224)
Q Consensus        32 ~~~~~w~~~~viY~i~-~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~  110 (224)
                      .+++.||++++||||+ +++|+   +++.|+|+|++++| +|||+||||+|||+|+++++.  .+|++.||++|||+|||
T Consensus         7 ~~~~~ww~~~viYqi~~~~sf~---gdg~Gdl~gi~~~L-dyl~~LGv~~i~l~Pi~~~~~--~~y~~~dy~~idp~~Gt   80 (424)
T 2dh2_A            7 LPAQKWWHTGALYRIGDLQAFQ---GHGAGNLAGLKGRL-DYLSSLKVKGLVLGPIHKNQK--DDVAQTDLLQIDPNFGS   80 (424)
T ss_dssp             CCCCCGGGSSCEEEECCHHHHH---CTTCCSHHHHHTTH-HHHHHTTCSEEEECCCEEECT--TCSTTEEEEEECGGGCC
T ss_pred             CCcccccccCeEEEEcCccccC---CCCCCCHHHHHHHH-HHHHHcCCCEEEECCCCCCCC--CCCCcccccccCccCCC
Confidence            3456899999999998 99997   56789999999999 999999999999999999974  56999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHH
Q psy8670         111 LKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK  145 (224)
Q Consensus       111 ~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~  145 (224)
                      ++||++||++||++||+||+|+|+||+| +|+||.
T Consensus        81 ~~d~~~lv~~ah~~Gi~vilD~V~NH~s-~~~wF~  114 (424)
T 2dh2_A           81 KEDFDSLLQSAKKKSIRVILDLTPNYRG-ENSWFS  114 (424)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCTTTTS-SSTTCS
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCcCC-Cccccc
Confidence            9999999999999999999999999999 889983

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=99.97  E-value=5.1e-31  Score=250.84  Aligned_cols=107  Identities=37%  Similarity=0.686  Sum_probs=97.3

Q ss_pred             CCCceEEEEecccccCcCCC---------C---------CCCHHHHHHHHHH--HHHHcCCCeEEEcCcccCC-------
Q psy8670          38 WQTSVFYHLYPRSFKDSNGD---------G---------VGDLKGMIEKLPE--HLHDLGVGAVWISPIFKSP-------   90 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~---------~---------~g~l~~~~~~l~~--~l~~lG~~~i~l~Pi~~~~-------   90 (224)
                      |++++||||+|++|++++++         +         .|+|+|++++| +  |||+||||+|||+|++++.       
T Consensus        12 ~~~~viYqi~~~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl~gi~~kL-d~~yLk~LGvt~IwL~Pi~~~~~~~~~~~   90 (686)
T 1d3c_A           12 FSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKI-NDGYLTGMGVTAIWISQPVENIYSIINYS   90 (686)
T ss_dssp             CTTCCEEEECGGGTCCSCGGGCCCGGGBCTTCCSTTSBCCCCHHHHHHHH-HTTTTGGGTCCEEEECCCEEECCCCEESS
T ss_pred             CccCcEEEEecccccCCCCCcCCCCcccCCCccccccccCcCHHHHHHhc-CHHHHHhcCCCEEEeCCcccCCccccccc
Confidence            79999999999999987753         2         38999999999 9  9999999999999999852       


Q ss_pred             ----CCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccc---hhHH
Q psy8670          91 ----MADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQH---EWFK  145 (224)
Q Consensus        91 ----~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~---~w~~  145 (224)
                          ..+|||++.||++|||+|||++||++||++||++||+||+|+|+||++.++   +||.
T Consensus        91 g~~~~~~~GYd~~dy~~idp~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NHts~~~~~~~~~~  152 (686)
T 1d3c_A           91 GVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFA  152 (686)
T ss_dssp             SCEECCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTST
T ss_pred             CccCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCcCccccccccccchh
Confidence                245999999999999999999999999999999999999999999999887   5554

>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A

Probab=99.96  E-value=8.3e-31  Score=245.93  Aligned_cols=117  Identities=20%  Similarity=0.271  Sum_probs=104.5

Q ss_pred             CCCCCccCCCceEEEEeccc-----ccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC--CCCCCCccCCCC
Q psy8670          31 IQEPLEWWQTSVFYHLYPRS-----FKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM--ADFGYDISDYLS  103 (224)
Q Consensus        31 ~~~~~~w~~~~viY~i~~~~-----f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~  103 (224)
                      .+..|+|+++++|||+|+++     |.++.+..+|+|++++++| +||++||||+|||+|++++..  .++||++.||++
T Consensus       113 ~~~~p~w~~~~viyq~F~w~~~~~~f~~~~~~~gG~~~gi~~~L-dyLk~LGvtaIwL~Pi~~~~s~~~~~GYd~~dy~~  191 (599)
T 3bc9_A          113 YPQIPDQEVNHTILQAFYWEMNTGEYATEHPEEANLWNLLAERA-PELAEAGFTAVWLPPANKGMAGIHDVGYGTYDLWD  191 (599)
T ss_dssp             CCCCCGGGCCCCEEECCCTTTTSHHHHHHCGGGGGHHHHHHHHH-HHHHHHTCCEEECCCCSEETTGGGCCSCSEEETTC
T ss_pred             cCCCchhhcCceEEEEeeccccccccccCCCCCCCCHHHHHHHH-HHHHHcCCCEEEECCcccCCCCCCCCCCChhhccc
Confidence            34567999999999998887     8876555569999999999 999999999999999999653  469999999996


Q ss_pred             ---------cCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCC--ccchhHHhhh
Q psy8670         104 ---------FEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS--NQHEWFKKSL  148 (224)
Q Consensus       104 ---------v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~--~~~~w~~~~~  148 (224)
                               |||+|||++||++||++||++||+||+|+|+||++  ..++||+...
T Consensus       192 l~e~~q~g~idp~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NH~~~~~~~~wf~~~~  247 (599)
T 3bc9_A          192 LGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVLLDE  247 (599)
T ss_dssp             SSCSCBTTBSSBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEBCT
T ss_pred             ccccccccccCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCCCCcCCccccccc
Confidence                     99999999999999999999999999999999996  5689998665

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=99.96  E-value=7.6e-31  Score=249.41  Aligned_cols=107  Identities=37%  Similarity=0.680  Sum_probs=97.2

Q ss_pred             CCCceEEEEecccccCcCCC---------C---------CCCHHHHHHHHHH--HHHHcCCCeEEEcCcccCC-------
Q psy8670          38 WQTSVFYHLYPRSFKDSNGD---------G---------VGDLKGMIEKLPE--HLHDLGVGAVWISPIFKSP-------   90 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~---------~---------~g~l~~~~~~l~~--~l~~lG~~~i~l~Pi~~~~-------   90 (224)
                      |++++||||+|++|.+++++         +         .|+|+|++++| +  |||+||||+|||+|++++.       
T Consensus         9 ~~~~viYqI~p~rF~d~~~~n~~~~~~~~~~~~~~~~~~gGdl~gi~~kL-d~~yLk~LGv~aIwL~Pi~~~~~~~~~~~   87 (680)
T 1cyg_A            9 FTSDVVYQIVVDRFVDGNTSNNPSGALFSSGCTNLRKYCGGDWQGIINKI-NDGYLTDMGVTAIWISQPVENVFSVMNDA   87 (680)
T ss_dssp             CTTCCEEEECGGGTCCSCGGGCCCGGGBCGGGCSTTSBCCCCHHHHHHHH-HTSTTTTTTCCEEEECCCEEECCCCCSSS
T ss_pred             CccceEEEEecccccCCCCCcCCCCcccCCCccccccccCcCHHHHHhhc-CHHHHHhCCCCEEEeCccccCcccccccc
Confidence            69999999999999988753         2         38999999999 9  9999999999999999862       


Q ss_pred             ---CCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccc---hhHH
Q psy8670          91 ---MADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQH---EWFK  145 (224)
Q Consensus        91 ---~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~---~w~~  145 (224)
                         ..++||++.||++|||+|||++||++||++||++||+||+|+|+||++..+   +||.
T Consensus        88 ~g~~~~~GY~~~Dy~~idp~~Gt~~df~~Lv~~aH~~GIkVilD~V~NHts~~~~~~~~~~  148 (680)
T 1cyg_A           88 SGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYM  148 (680)
T ss_dssp             SCCCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTST
T ss_pred             CCCCCCCCcCchhccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccccCcchh
Confidence               245999999999999999999999999999999999999999999999877   5554

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=99.96  E-value=4.1e-30  Score=243.55  Aligned_cols=150  Identities=18%  Similarity=0.300  Sum_probs=120.5

Q ss_pred             CCccCCCceEEEEecccccCcCCC----CCCCHHHHHHH--HHHHHHHcCCCeEEEcCcccCCCC----------CCCCC
Q psy8670          34 PLEWWQTSVFYHLYPRSFKDSNGD----GVGDLKGMIEK--LPEHLHDLGVGAVWISPIFKSPMA----------DFGYD   97 (224)
Q Consensus        34 ~~~w~~~~viY~i~~~~f~~~~~~----~~g~l~~~~~~--l~~~l~~lG~~~i~l~Pi~~~~~~----------~~gY~   97 (224)
                      +..||++.+|||+|+++|++++++    ..|+|++++++  | +|||+||||+|||+||++++..          +|||+
T Consensus       144 ~~~~~~~~vIYei~v~~F~~~~~~~~~~~~G~~~gi~~~~~l-~yL~~LGvt~i~L~Pi~~~~~~~~~~~~g~~~~wGY~  222 (657)
T 2wsk_A          144 PRTPWGSTIIYEAHVKGLTYLHPEIPVEIRGTYKALGHPVMI-NYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYN  222 (657)
T ss_dssp             CCCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHTSHHHH-HHHHHHTCCEEEESCCEEECCCHHHHTTTCCCSSCCC
T ss_pred             CCCCchhcEEEEEEcceeeccCCCCCccCCcCHHHHhcccch-HHHHHcCCCEEEECCccccCccccccccccccccCcC
Confidence            456899999999999999987655    47999999999  8 9999999999999999998653          58999


Q ss_pred             ccCCCCcCCCCC-----CHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhh-hcCCCCccccccchhcccCCCcce
Q psy8670          98 ISDYLSFEPLFG-----DLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS-LANIPPYKCASLLARLHDLGVGAV  171 (224)
Q Consensus        98 ~~d~~~v~~~~G-----~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~-~~~~~~~~~~f~w~~~~~lG~~~~  171 (224)
                      +.||++++|+||     +++||++||++||++||+||+|+|+||++.+++|+... ..+. ...+||....   .|   .
T Consensus       223 ~~~y~~~~~~~G~~p~~~~~d~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~-~~~~~y~~~~---~~---~  295 (657)
T 2wsk_A          223 PVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGI-DNRSYYWIRE---DG---D  295 (657)
T ss_dssp             EEEEEEECGGGCSSGGGHHHHHHHHHHHHHHTTCEEEEEECCSCCTTCSTTSBCCSHHHH-HHHHHBCBCT---TS---S
T ss_pred             cccCCCCCHHHcCCCCcCHHHHHHHHHHHHHCCCEEEEEEeecccccccccCccccccCC-CCccceEECC---CC---C
Confidence            999999999999     48999999999999999999999999999999986321 1110 1245663221   11   1


Q ss_pred             eecccccCCCCCCCCcchhhHH
Q psy8670         172 WISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       172 w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      |..  +...++++|+.++.+++
T Consensus       296 ~~~--~~~~~~~ln~~~p~v~~  315 (657)
T 2wsk_A          296 YHN--WTGCGNTLNLSHPAVVD  315 (657)
T ss_dssp             BCC--SSSSSCCBCTTSHHHHH
T ss_pred             eeC--CCCcCCcccCCCHHHHH
Confidence            222  22335799999999887

>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*

Probab=99.96  E-value=2.2e-29  Score=227.97  Aligned_cols=101  Identities=26%  Similarity=0.452  Sum_probs=93.4

Q ss_pred             CCceEEEEecccccCcCCCCCCC-HHHHHHHHHHHHHHcCCCeEEEcCcccCCCC--CCCCCccCCC---------CcCC
Q psy8670          39 QTSVFYHLYPRSFKDSNGDGVGD-LKGMIEKLPEHLHDLGVGAVWISPIFKSPMA--DFGYDISDYL---------SFEP  106 (224)
Q Consensus        39 ~~~viY~i~~~~f~~~~~~~~g~-l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~---------~v~~  106 (224)
                      ++.+|||+|++.|.+     .|+ |++++++| +|||+||||+|||+|+++++..  ++||++.||+         ++||
T Consensus         8 ~~~viyq~f~w~~~~-----~G~~~~gi~~~L-dyl~~lGvt~I~l~Pi~~~~~~~~~~gY~~~dy~~lg~~~~~~~id~   81 (435)
T 1mxg_A            8 EGGVIMQAFYWDVPG-----GGIWWDHIRSKI-PEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVET   81 (435)
T ss_dssp             GTCCEEECCCTTCCC-----SSCHHHHHHHHH-HHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSSC
T ss_pred             CCcEEEEEEEeccCC-----CCCHHHHHHHHH-HHHHHcCCCEEEeCCcccCCCCCCCCCcCcccccccccccccCcCCC
Confidence            578999999999865     589 99999999 9999999999999999998754  6899999999         5999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHH
Q psy8670         107 LFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK  145 (224)
Q Consensus       107 ~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~  145 (224)
                      +|||++||++||++||++||+||+|+|+||++.++.|..
T Consensus        82 ~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~  120 (435)
T 1mxg_A           82 RFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWN  120 (435)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEECcccccCCCcccC
Confidence            999999999999999999999999999999999887543

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=99.96  E-value=2.7e-29  Score=240.01  Aligned_cols=152  Identities=19%  Similarity=0.298  Sum_probs=120.8

Q ss_pred             CCccCCCceEEEEecccccCcCC----CCCCCHHHHHHH--HHHHHHHcCCCeEEEcCcccCCCC----------CCCCC
Q psy8670          34 PLEWWQTSVFYHLYPRSFKDSNG----DGVGDLKGMIEK--LPEHLHDLGVGAVWISPIFKSPMA----------DFGYD   97 (224)
Q Consensus        34 ~~~w~~~~viY~i~~~~f~~~~~----~~~g~l~~~~~~--l~~~l~~lG~~~i~l~Pi~~~~~~----------~~gY~   97 (224)
                      +..||++.+|||+|+++|+++++    ...|+|++++++  | +|||+||||+|||+||++++..          +|||+
T Consensus       167 ~~~~~~~~vIYeihv~~f~~~~~~~~~~~~Gt~~gi~~~~~l-~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~~wGY~  245 (718)
T 2vr5_A          167 KKVPLKDTVIYEVHVKGFTKLRLDLPENIRGTYEGLASEQMI-SYLKDLGITTVELMPVFHFIDQRFLTDKGLTNYWGYD  245 (718)
T ss_dssp             SCCCTTSCCEEEECTTTTTTTCTTSCTTSTTSHHHHTSHHHH-HHHHHHTCCEEEECCCBCBCCCHHHHTTTCCCSSCCC
T ss_pred             CCCChhHCEEEEEEcchhhcCCCCCCcccCcCHHHHhcchhh-HHHHHcCCCeEEEeCCEecCccccccccCCcCccCcC
Confidence            44678999999999999998554    347999999999  8 9999999999999999998642          48999


Q ss_pred             ccCCCCcCCCCCC-------HHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhh-hcCCCCccccccchhcccCCCc
Q psy8670          98 ISDYLSFEPLFGD-------LKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS-LANIPPYKCASLLARLHDLGVG  169 (224)
Q Consensus        98 ~~d~~~v~~~~G~-------~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~-~~~~~~~~~~f~w~~~~~lG~~  169 (224)
                      +.||++++|+|||       ++||++||++||++||+||+|+|+||++.+++|.... ..+ ..+.+||.+...   +  
T Consensus       246 ~~~y~~~~~~yGt~~~~~~~~~dfk~lv~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~-~~~~~yy~~~~~---~--  319 (718)
T 2vr5_A          246 PINFFSPECRYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDVVYNHTAEGNHLGPTLSFRG-IDNTAYYMLQPD---N--  319 (718)
T ss_dssp             BSCSSSBCGGGCSSCTTTHHHHHHHHHHHHHHTTTCEEEEEECCSCCSSCSTTSCCSSHHH-HHSTTTBCBCTT---T--
T ss_pred             cccCcccChhhcCCCCCCchHHHHHHHHHHHHHCCCEEEEEeccCcccCccccCccccccC-CCCCcceEeCCC---C--
Confidence            9999999999999       8999999999999999999999999999999874211 011 123567765421   1  


Q ss_pred             ceeecccccCCCCCCCCcchhhHH
Q psy8670         170 AVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       170 ~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      ..++.. +...++++|+.++.+++
T Consensus       320 ~~~~~~-~~~~~~~ln~~~p~v~~  342 (718)
T 2vr5_A          320 KRYYLD-FTGTGNTLNLSHPRVIQ  342 (718)
T ss_dssp             SSSBCC-SSSSSCCBCTTSHHHHH
T ss_pred             Cceeec-CCCccCeecCCCHHHHH
Confidence            112222 22335799999999887

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=99.96  E-value=4.7e-29  Score=238.37  Aligned_cols=146  Identities=20%  Similarity=0.279  Sum_probs=116.6

Q ss_pred             CCccCCCceEEEEecccccCcCCCCC---CCHHHHHH-----------HHHHHHHHcCCCeEEEcCcccCCC--------
Q psy8670          34 PLEWWQTSVFYHLYPRSFKDSNGDGV---GDLKGMIE-----------KLPEHLHDLGVGAVWISPIFKSPM--------   91 (224)
Q Consensus        34 ~~~w~~~~viY~i~~~~f~~~~~~~~---g~l~~~~~-----------~l~~~l~~lG~~~i~l~Pi~~~~~--------   91 (224)
                      +..|+++++|||+|+++|+++++++.   |+|.++++           +| +|||+||||+|||+||++++.        
T Consensus       208 ~~~~~~~~viYei~v~~F~~~~~~g~~~~G~~~g~~e~~~~~l~Gi~~~L-dyLk~LGvtaI~L~Pi~~~~~~de~~~~~  286 (718)
T 2e8y_A          208 PFSHPVDAVIYETHLRDFSIHENSGMINKGKYLALTETDTQTANGSSSGL-AYVKELGVTHVELLPVNDFAGVDEEKPLD  286 (718)
T ss_dssp             CCSCGGGCCEEEECHHHHHHSTTSCCSSTTSGGGGGCTTCBCTTSCBCHH-HHHHHHTCSEEEESCCEEESSSCTTSGGG
T ss_pred             CCCChhhcEEEEEehHHhcCCCCCCCCCCCCeeccccccccccccchhhh-HHHHHcCCCEEEECCccccCccccccccc
Confidence            34568999999999999998766554   88888876           78 999999999999999998754        


Q ss_pred             -CCCCCCccCCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEecCCCCCCccc-hhHHhhhcCCCCccccccch
Q psy8670          92 -ADFGYDISDYLSFEPLFGD--------LKDFETLKERLHALGIKILLDFVPNHTSNQH-EWFKKSLANIPPYKCASLLA  161 (224)
Q Consensus        92 -~~~gY~~~d~~~v~~~~G~--------~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~-~w~~~~~~~~~~~~~~f~w~  161 (224)
                       .+|||++.||++++++||+        ++||++||++||++||+||+|+|+||++.++ +||++..      ++||.+.
T Consensus       287 ~~~wGYd~~dy~a~~~~yg~~p~~g~~~~~dfk~LV~~aH~~GI~VIlDvV~NHt~~~~~~~f~~~~------p~y~~~~  360 (718)
T 2e8y_A          287 AYNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTLHQHGLRVILDVVFNHVYKRENSPFEKTV------PGYFFRH  360 (718)
T ss_dssp             CCCCCCSEEEEEEECSTTSSCSSSHHHHHHHHHHHHHHHHHTTCEEEEEECTTCCSSGGGSHHHHHS------TTTSBCB
T ss_pred             cCcCCCCccCCCCcCcccccCCCCccccHHHHHHHHHHHHHCCCEEEEEEecccccCcccccccccC------CCeEEec
Confidence             3599999999999999996        6999999999999999999999999999998 6998653      2455432


Q ss_pred             hcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         162 RLHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       162 ~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      +.  .|   .+..  ...-.+|+|+.|+.+++
T Consensus       361 ~~--~g---~~~n--~~~~g~dln~~np~Vr~  385 (718)
T 2e8y_A          361 DE--CG---KPSN--GTGVGNDIASERRMARK  385 (718)
T ss_dssp             CT--TS---SBCC--TTSSSCCBCTTSHHHHH
T ss_pred             CC--CC---cccC--CCCcccccccCCHHHHH
Confidence            21  11   1111  01113689999999876

>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*

Probab=99.95  E-value=1e-28  Score=234.56  Aligned_cols=147  Identities=21%  Similarity=0.339  Sum_probs=119.2

Q ss_pred             CccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC--------------CCCC--CCc
Q psy8670          35 LEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM--------------ADFG--YDI   98 (224)
Q Consensus        35 ~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~--------------~~~g--Y~~   98 (224)
                      +.|+..++|||+|+++|++.+++ .|+|++++++| +|||+||||+|||+||++++.              .++|  |++
T Consensus       226 r~~~~~~~iYEi~~rsf~~~~~~-~Gd~~gi~~~L-dyLk~LGvt~I~L~Pi~~~~~~~~~g~~n~~~~~~~d~GspY~i  303 (695)
T 3zss_A          226 RERALYGAWYEFFPRSEGTPHTP-HGTFRTAARRL-PAIAAMGFDVVYLPPIHPIGTTHRKGRNNTLSATGDDVGVPWAI  303 (695)
T ss_dssp             CHHHHCEEEEECCGGGSCCSSCC-SCCHHHHGGGH-HHHHHTTCCEEEECCCSCBCCTTCCCGGGCSSCCTTCCCCTTSB
T ss_pred             ccccccceEEEEehhHhcCCCCC-CCCHHHHHHHH-HHHHhCCCCEEEECCcccCCccccccccccccccccCCCCcccc
Confidence            45677899999999999988776 89999999999 999999999999999999853              1345  888


Q ss_pred             cC----CCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCcceeec
Q psy8670          99 SD----YLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWIS  174 (224)
Q Consensus        99 ~d----~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~  174 (224)
                      .|    |++|||+|||++||++||++||++||+||+|+|+|| +.+++||+       ++++||.+..........  ..
T Consensus       304 ~d~~~~y~~idp~~Gt~edfk~LV~~aH~~GI~VilD~V~Nh-s~~~~~~~-------~~~dwf~~~~dg~~~~~~--~~  373 (695)
T 3zss_A          304 GSPEGGHDSIHPALGTLDDFDHFVTEAGKLGLEIALDFALQC-SPDHPWVH-------KHPEWFHHRPDGTIAHAE--NP  373 (695)
T ss_dssp             CBTTBCTTSCCTTTCCHHHHHHHHHHHHHTTCEEEEEECCEE-CTTSTHHH-------HCGGGSCCCTTSCCCCEE--ET
T ss_pred             cCCCCCccccCcccCCHHHHHHHHHHHHHCCCEEEEEeeccC-Cccchhhh-------cccceeeecCCCCcccCC--CC
Confidence            88    999999999999999999999999999999999998 88899998       578999875421111000  00


Q ss_pred             ccccCCCCCCCCcc--hhhHH
Q psy8670         175 PIFKSPMADFGYDI--SDYLR  193 (224)
Q Consensus       175 p~f~~~~~dlny~n--~d~~~  193 (224)
                      |--..+..++||+|  +.+++
T Consensus       374 ~~~~~~~~dLn~~n~~p~V~~  394 (695)
T 3zss_A          374 PKKYQDIYPIAFDADPDGLAT  394 (695)
T ss_dssp             TEEETTCEECCCSSCHHHHHH
T ss_pred             CccccccccccccCCcHHHHH
Confidence            11112356899999  77765

>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*

Probab=99.95  E-value=8.5e-29  Score=226.63  Aligned_cols=105  Identities=20%  Similarity=0.374  Sum_probs=95.1

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCC---------cCCCC
Q psy8670          39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLS---------FEPLF  108 (224)
Q Consensus        39 ~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~---------v~~~~  108 (224)
                      ++.+|||+|++.|.+    ..|+|++++++| +|||+||||+|||+||+++.. .++||++.||++         |||+|
T Consensus         5 ~~~vi~q~f~w~~~~----~gG~~~gi~~~L-dyL~~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~~~~~~q~~~idp~~   79 (485)
T 1wpc_A            5 TNGTMMQYFEWYLPN----DGNHWNRLNSDA-SNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKY   79 (485)
T ss_dssp             CCCCEEECCCTTCCS----SSCHHHHHHHHH-HHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSCSS
T ss_pred             CCceEEEEEecCCCC----CCCcHHHHHHHH-HHHHHcCCCEEEeCCcccCCCCCCCCCCeecccccccccccCccCCCC
Confidence            478999999999864    358999999999 999999999999999999642 579999999995         99999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEecCCCCCC--ccchhHHhhh
Q psy8670         109 GDLKDFETLKERLHALGIKILLDFVPNHTS--NQHEWFKKSL  148 (224)
Q Consensus       109 G~~~~~~~lv~~~h~~gi~vilD~v~nh~~--~~~~w~~~~~  148 (224)
                      ||++||++||++||++||+||+|+|+||++  ..++||..+.
T Consensus        80 Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~f~~~~  121 (485)
T 1wpc_A           80 GTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVE  121 (485)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEEeccccCCCCcCcceeEEe
Confidence            999999999999999999999999999996  5788987653

>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*

Probab=99.95  E-value=1.7e-28  Score=220.24  Aligned_cols=145  Identities=17%  Similarity=0.171  Sum_probs=109.1

Q ss_pred             Eecccc-cCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcC-CCCCCHHHHHHHHHHHHH
Q psy8670          46 LYPRSF-KDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFE-PLFGDLKDFETLKERLHA  123 (224)
Q Consensus        46 i~~~~f-~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~-~~~G~~~~~~~lv~~~h~  123 (224)
                      |++++| .++++++.|+|++++++| +|||+||||+|||+|+++++. ++||++.||+++| |+|||++||++||++||+
T Consensus         3 v~~~~F~~d~~~d~~G~~~gi~~~l-dyl~~lGv~~i~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~   80 (405)
T 1ht6_A            3 VLFQGFNWESWKQSGGWYNMMMGKV-DDIAAAGVTHVWLPPPSHSVS-NEGYMPGRLYDIDASKYGNAAELKSLIGALHG   80 (405)
T ss_dssp             CEEECCCTTGGGCTTCHHHHHHTTH-HHHHHTTCCEEEECCCSCBSS-TTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHH
T ss_pred             cEEEeEEcCCCCCCCcCHHHHHHHH-HHHHHcCCCEEEeCCCccCCC-CCCCCccccccCCCccCCCHHHHHHHHHHHHH
Confidence            567788 567788899999999999 999999999999999999984 5999999999999 999999999999999999


Q ss_pred             cCCEEEEecCCCCCCccch-----hHHhhhcC-CCCccccc---cchhcccCC-CcceeecccccCCCCCCCCcchhhHH
Q psy8670         124 LGIKILLDFVPNHTSNQHE-----WFKKSLAN-IPPYKCAS---LLARLHDLG-VGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       124 ~gi~vilD~v~nh~~~~~~-----w~~~~~~~-~~~~~~~f---~w~~~~~lG-~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      +||+||+|+|+||++.+++     |+. .... ..++.+|.   +........ ..+.+....+...++|+|+.||++++
T Consensus        81 ~Gi~VilD~V~NH~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~  159 (405)
T 1ht6_A           81 KGVQAIADIVINHRCADYKDSRGIYCI-FEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQR  159 (405)
T ss_dssp             TTCEEEEEECCSBCCCSEECTTSCEEE-CCCSSSSSTTCCCGGGBCTTCTTTCCSCSCCCSSCCCTTSCBBCTTCHHHHH
T ss_pred             CCCEEEEEECcCcccCCCCCCCCCccc-CCCCCcCCCCCCCCccccCCCCCcCCCCCcccCCCCcCcCCccCcCCHHHHH
Confidence            9999999999999999887     431 0000 01122222   111110011 00112222334467999999999886

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=99.95  E-value=3.8e-28  Score=228.62  Aligned_cols=141  Identities=17%  Similarity=0.303  Sum_probs=109.9

Q ss_pred             CCceEEEEecccccCcCCCC-CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCC-CCCCCccCCCCcCCCCCCHHHHHH
Q psy8670          39 QTSVFYHLYPRSFKDSNGDG-VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA-DFGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        39 ~~~viY~i~~~~f~~~~~~~-~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~-~~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      ++.+|||+|+++|+++++++ .|+|++++++|++|||+||||+|||+||++++.. +|||++.||++++|+|||++||++
T Consensus       130 ~~~~iYei~~~~f~~~~~~g~~g~~~~i~~~ll~yl~~lGv~~i~l~Pi~~~~~~~~~GY~~~~y~~~~~~~Gt~~~~~~  209 (617)
T 1m7x_A          130 APISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRY  209 (617)
T ss_dssp             SCCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEECGGGSCHHHHHH
T ss_pred             CCcEEEEEEHHHhcCCCCCCCccCHHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcccccCCccCccCCCHHHHHH
Confidence            56899999999999876655 7899999999669999999999999999998753 599999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEecCCCCCCccc-hhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         117 LKERLHALGIKILLDFVPNHTSNQH-EWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       117 lv~~~h~~gi~vilD~v~nh~~~~~-~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      ||++||++||+||+|+|+||++.++ .|..  ..+.    .+|.+.+.. .|....|.+       .++||.++++++
T Consensus       210 lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~--~d~~----~~y~~~~~~-~g~~~~w~~-------~~ln~~~p~v~~  273 (617)
T 1m7x_A          210 FIDAAHAAGLNVILDWVPGHFPTDDFALAE--FDGT----NLYEHSDPR-EGYHQDWNT-------LIYNYGRREVSN  273 (617)
T ss_dssp             HHHHHHHTTCEEEEEECTTSCCCSTTSSTT--GGGS----CSSBCC------------C-------CCBCTTSHHHHH
T ss_pred             HHHHHHHCCCEEEEEEecCcccCccchhhh--cCCC----ccccccCcc-cCCcCCCCC-------ceecCCCHHHHH
Confidence            9999999999999999999997654 4432  1221    244332211 122222322       579999999887

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=99.95  E-value=3.3e-28  Score=228.39  Aligned_cols=130  Identities=24%  Similarity=0.351  Sum_probs=111.2

Q ss_pred             CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      |++.+|||+|+++|+.     .|+|++++++| +|||+||||+|||+||++++. .+|||++.||++++|+|||++||++
T Consensus       124 ~~~~viYei~~~~f~~-----~G~~~gi~~~L-~yl~~lGv~~I~L~Pi~~~~~~~~wGY~~~~y~~~~~~~Gt~~d~~~  197 (602)
T 2bhu_A          124 LADCVFYEVHVGTFTP-----EGTYRAAAEKL-PYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLMA  197 (602)
T ss_dssp             GGGCCEEEECHHHHSS-----SCSHHHHHHTH-HHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGCCHHHHHH
T ss_pred             cccceEEEEeeccccc-----CCCHHHHHHHH-HHHHHcCCCEEEECChhhccCCCCCCcccccCcccCcCCCCHHHHHH
Confidence            7999999999999974     69999999999 999999999999999999864 4579999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      ||++||++||+||+|+|+||++.+++|+....      ++||.-.          +.+++    .+++||+++++++
T Consensus       198 lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~------~~~~~~~----------~~~~w----~~~ln~~~~~v~~  254 (602)
T 2bhu_A          198 LVDAAHRLGLGVFLDVVYNHFGPSGNYLSSYA------PSYFTDR----------FSSAW----GMGLDYAEPHMRR  254 (602)
T ss_dssp             HHHHHHHTTCEEEEEECCSCCCSSSCCHHHHC------GGGEEEE----------EECSS----SEEECTTSHHHHH
T ss_pred             HHHHHHHCCCEEEEEecccccccCCccccccC------cccccCC----------CCCCC----CCCccCCCHHHHH
Confidence            99999999999999999999999998886332      2455310          11111    2578999999876

>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A

Probab=99.95  E-value=2.7e-28  Score=223.05  Aligned_cols=105  Identities=22%  Similarity=0.368  Sum_probs=94.6

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCC---------cCCCC
Q psy8670          39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLS---------FEPLF  108 (224)
Q Consensus        39 ~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~---------v~~~~  108 (224)
                      ++.+|||+|.+.+.+    ..|+|++++++| +|||+||||+|||+||+++.. .++||++.||++         |||+|
T Consensus         3 ~~~vi~q~f~w~~~~----~gG~~~gi~~~L-dyL~~LGvt~I~l~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~idp~~   77 (480)
T 1ud2_A            3 LNGTMMQYYEWHLEN----DGQHWNRLHDDA-AALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKY   77 (480)
T ss_dssp             CCCCEEECCCTTCCC----SSCHHHHHHHHH-HHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSS
T ss_pred             CCceEEEeeeccCCC----CCCcHHHHHHHH-HHHHHcCCCEEEeCCcccCCCCCCCCcCccchhhcccccccCccCCCC
Confidence            368999999998754    368999999999 999999999999999999643 579999999995         99999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEecCCCCCC--ccchhHHhhh
Q psy8670         109 GDLKDFETLKERLHALGIKILLDFVPNHTS--NQHEWFKKSL  148 (224)
Q Consensus       109 G~~~~~~~lv~~~h~~gi~vilD~v~nh~~--~~~~w~~~~~  148 (224)
                      ||++||++||++||++||+||+|+|+||++  ..++||..+.
T Consensus        78 Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~f~~~~  119 (480)
T 1ud2_A           78 GTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQ  119 (480)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEEccCccccccccccceeee
Confidence            999999999999999999999999999996  4789987653

>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A

Probab=99.95  E-value=4.5e-28  Score=221.71  Aligned_cols=104  Identities=23%  Similarity=0.399  Sum_probs=93.9

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCC---------cCCCC
Q psy8670          39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLS---------FEPLF  108 (224)
Q Consensus        39 ~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~---------v~~~~  108 (224)
                      ++.+|||+|.+.+.+    ..|+|++++++| +|||+||||+|||+||+++.. .++||++.||++         |||+|
T Consensus         1 ~~~vi~q~f~w~~~~----~gG~~~gi~~~L-dyL~~LGvt~I~L~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~id~~~   75 (483)
T 3bh4_A            1 VNGTLMQYFEWYTPN----DGQHWKRLQNDA-EHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKY   75 (483)
T ss_dssp             CCCCEEECCCTTCCS----SSCHHHHHHHHH-HHHHHHTCCEEEECCCSEESSTTSCSSSEEETTCSSCSCCSSCSSCSS
T ss_pred             CCccEEEEEEeccCC----CCCCHHHHHHHH-HHHHhcCCCEEEcCccccCCCCCCCCcccccccccccccccCccCCCC
Confidence            468999999988754    358999999999 999999999999999999643 579999999994         99999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEecCCCCCC--ccchhHHhh
Q psy8670         109 GDLKDFETLKERLHALGIKILLDFVPNHTS--NQHEWFKKS  147 (224)
Q Consensus       109 G~~~~~~~lv~~~h~~gi~vilD~v~nh~~--~~~~w~~~~  147 (224)
                      ||++||++||++||++||+||+|+|+||++  ..++||..+
T Consensus        76 Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~~~d~~~~f~~~  116 (483)
T 3bh4_A           76 GTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAV  116 (483)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEEccCcccCcccccceeee
Confidence            999999999999999999999999999997  478898754

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=99.95  E-value=1e-27  Score=229.96  Aligned_cols=110  Identities=26%  Similarity=0.414  Sum_probs=100.8

Q ss_pred             CccCCCceEEEEecccccCcCCC----CCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-------------CCCCCC
Q psy8670          35 LEWWQTSVFYHLYPRSFKDSNGD----GVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-------------ADFGYD   97 (224)
Q Consensus        35 ~~w~~~~viY~i~~~~f~~~~~~----~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-------------~~~gY~   97 (224)
                      ..||++.+|||+|+++|+..+++    ..|+|++++++| +|||+||||+|||+||++++.             .+|||+
T Consensus       173 ~~~~~~~vIYe~hv~~f~~~~~~~~~~~~Gt~~gl~~~l-~yLk~LGvt~V~L~Pi~~~~~~~~~~~~~~~g~~~~wGY~  251 (750)
T 1bf2_A          173 TRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKA-SYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYM  251 (750)
T ss_dssp             CCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHTH-HHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCC
T ss_pred             CCCccccEEEEEEhhHhhCcCCCCCccCCcCHHHHHHHH-HHHHHcCCCEEEECCcccCccccccccccccccccccCcC
Confidence            45789999999999999886543    369999999999 999999999999999999853             348999


Q ss_pred             ccCCCCcCCCCCC-------HHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHH
Q psy8670          98 ISDYLSFEPLFGD-------LKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK  145 (224)
Q Consensus        98 ~~d~~~v~~~~G~-------~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~  145 (224)
                      +.||++++|+|||       ++||++||++||++||+||+|+|+||++.+++|+.
T Consensus       252 ~~dy~~~~~~yGt~~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~  306 (750)
T 1bf2_A          252 TENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTS  306 (750)
T ss_dssp             BSCSSCBCGGGCSCCSTTHHHHHHHHHHHHHHHTTCEEEEEECCSSCTTCSBSSS
T ss_pred             cccccccCccccCCCCCccHHHHHHHHHHHHHHCCCEEEEEEecccccCcccccc
Confidence            9999999999999       99999999999999999999999999999999873

>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*

Probab=99.94  E-value=7.5e-28  Score=227.30  Aligned_cols=123  Identities=22%  Similarity=0.439  Sum_probs=110.3

Q ss_pred             CCCccCCCceEEEEecccccCcCCC--------------CCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC------C
Q psy8670          33 EPLEWWQTSVFYHLYPRSFKDSNGD--------------GVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM------A   92 (224)
Q Consensus        33 ~~~~w~~~~viY~i~~~~f~~~~~~--------------~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~------~   92 (224)
                      .++.||++++|||+|+++|++.+++              ..|+|++++++| +|||+||||+|||+||++++.      .
T Consensus        76 ~~~~~~~~~~iYe~~~~~f~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~l-~~l~~lG~~~v~l~Pi~~~~~~~~~g~~  154 (637)
T 1gjw_A           76 KTPDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLL-PFVKSLGADAIYLLPVSRMSDLFKKGDA  154 (637)
T ss_dssp             CSGGGGGGCCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHTH-HHHHHHTCCEEEECCCEEECCSSCSSSS
T ss_pred             CccCchhhCeEEEEeeccccCCCCCCCCccccccccchhccccHHHHHHHH-HHHHHcCCCEEEeCCCeecccccccCCC
Confidence            5578999999999999999876532              248999999999 999999999999999998753      2


Q ss_pred             CCCCCccCCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhc
Q psy8670          93 DFGYDISDYLSFEPLFGD--------LKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARL  163 (224)
Q Consensus        93 ~~gY~~~d~~~v~~~~G~--------~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~  163 (224)
                      +|||++.||++++|+||+        .+||++||++||++||+||+|+|+||++.+++|++       .+++||.|.+.
T Consensus       155 ~~gY~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~-------~~p~~f~~~~~  226 (637)
T 1gjw_A          155 PSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIR-------EHPDWFYWIKV  226 (637)
T ss_dssp             CCTTSEEEEEEECGGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEEECTTEEETTCGGGT-------TCGGGSCCEEG
T ss_pred             CCccCCCCcCCcCcccCCCcccccchHHHHHHHHHHHHHCCCEEEEEECcCCCcCcchhhh-------hCCceeEeccc
Confidence            469999999999999999        79999999999999999999999999999999987       78899987654

>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1

Probab=99.94  E-value=1.7e-27  Score=219.72  Aligned_cols=105  Identities=20%  Similarity=0.428  Sum_probs=94.4

Q ss_pred             CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCC---------cCCC
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLS---------FEPL  107 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~---------v~~~  107 (224)
                      .++.+|||+|.+.+.+    ..|+|++++++| +|||+||||+|||+||+++.. .++||++.||++         |||+
T Consensus         3 ~~~~v~~q~F~W~~~~----~gG~~~gi~~~L-dyLk~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~l~~f~~~~~idp~   77 (515)
T 1hvx_A            3 PFNGTMMQYFEWYLPD----DGTLWTKVANEA-NNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTK   77 (515)
T ss_dssp             CCCCCEEECCCTTCCS----SSCHHHHHHHHH-HHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCS
T ss_pred             CCCceEEEEEEccCCC----CCCcHHHHHHHH-HHHHhcCCCEEEeCCcccCCCCCCCCcCeecccccccccccCccCCC
Confidence            3578999999888754    368999999999 999999999999999999643 579999999997         9999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEecCCCCCC--ccchhHHhh
Q psy8670         108 FGDLKDFETLKERLHALGIKILLDFVPNHTS--NQHEWFKKS  147 (224)
Q Consensus       108 ~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~--~~~~w~~~~  147 (224)
                      |||++||++||++||++||+||+|+|+||++  ..++||...
T Consensus        78 ~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~d~~~~f~~~  119 (515)
T 1hvx_A           78 YGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAV  119 (515)
T ss_dssp             SCCHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEEecCCccCCCcccceeEE
Confidence            9999999999999999999999999999996  478888654

>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A*

Probab=99.94  E-value=1.1e-27  Score=220.54  Aligned_cols=139  Identities=24%  Similarity=0.314  Sum_probs=112.1

Q ss_pred             EecccccCcCCCCCCCHHHHHHHHHH-HHHHcCCCeEEEcCcc-cCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHH
Q psy8670          46 LYPRSFKDSNGDGVGDLKGMIEKLPE-HLHDLGVGAVWISPIF-KSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHA  123 (224)
Q Consensus        46 i~~~~f~~~~~~~~g~l~~~~~~l~~-~l~~lG~~~i~l~Pi~-~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~  123 (224)
                      |++.+|.+++.  .|++++++++| + |||+| ||+|||+||+ +++..++||++.||++|||+|||++||++||+    
T Consensus         5 i~~~sf~d~~~--gg~~~~i~~~l-d~yL~~L-v~~IwL~Pi~~~~~~~~~GY~~~dy~~idp~~Gt~~df~~Lv~----   76 (504)
T 1r7a_A            5 VQLITYADRLG--DGTIKSMTDIL-RTRFDGV-YDGVHILPFFTPFDGADAGFDPIDHTKVDERLGSWDDVAELSK----   76 (504)
T ss_dssp             CEEEECSSSBS--SSSHHHHHHHH-HHHSTTT-CCEEEECCCEECSSSSSTTSSCSEEEEECTTTCCHHHHHHHHT----
T ss_pred             EeeeeeEeccC--CCCHHHHHHHH-HHHHHHH-hCeEEECCcccCCCCCCCCCCccChhhcCcccCCHHHHHHHHh----
Confidence            44556655442  47999999999 9 99999 9999999999 88766899999999999999999999999996    


Q ss_pred             cCCEEEEecCCCCCCccchhHHhhhc--CCCCcccccc-chh----cc---c----C----CC---------cceeeccc
Q psy8670         124 LGIKILLDFVPNHTSNQHEWFKKSLA--NIPPYKCASL-LAR----LH---D----L----GV---------GAVWISPI  176 (224)
Q Consensus       124 ~gi~vilD~v~nh~~~~~~w~~~~~~--~~~~~~~~f~-w~~----~~---~----l----G~---------~~~w~~p~  176 (224)
                       ||+||+|+|+||++.+|+||++++.  ..++|.+||+ |.+    ..   +    .    +.         .+.|+...
T Consensus        77 -Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  155 (504)
T 1r7a_A           77 -THNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKTRLVWVS  155 (504)
T ss_dssp             -TSEEEEEEECSEEETTSHHHHHHHHHGGGSTTGGGBCBHHHHCTTCBCHHHHHTSCCSSSSCSEEEEEETTEEEEEECS
T ss_pred             -CCEEEEEECCCcCCCcchHHHHHhhcCCCCccccceEeccccCcCCCCCcchhhhcCCCCCCCCCCceEcCCceEEECc
Confidence             9999999999999999999998874  2678999997 332    10   0    0    10         11233344


Q ss_pred             ccCCCCCCCCcchhhHH
Q psy8670         177 FKSPMADFGYDISDYLR  193 (224)
Q Consensus       177 f~~~~~dlny~n~d~~~  193 (224)
                      |...++|+|++||++++
T Consensus       156 f~~~~pdLn~~np~Vr~  172 (504)
T 1r7a_A          156 FTPQQVDIDTDSDKGWE  172 (504)
T ss_dssp             SSTTEEEBCTTSHHHHH
T ss_pred             cCCCCCccCCCCHHHHH
Confidence            65678999999999886

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=99.94  E-value=1.4e-27  Score=233.18  Aligned_cols=145  Identities=21%  Similarity=0.262  Sum_probs=112.1

Q ss_pred             CccCCCceEEEEecccccCcCCCCC---CCHHHHHHH-----------HHHHHHHcCCCeEEEcCcccCCC--------C
Q psy8670          35 LEWWQTSVFYHLYPRSFKDSNGDGV---GDLKGMIEK-----------LPEHLHDLGVGAVWISPIFKSPM--------A   92 (224)
Q Consensus        35 ~~w~~~~viY~i~~~~f~~~~~~~~---g~l~~~~~~-----------l~~~l~~lG~~~i~l~Pi~~~~~--------~   92 (224)
                      ..|+++.+|||+|+++|+++++++.   |+|.+++++           | +|||+||||+|||+||++++.        .
T Consensus       427 ~~~~~~~vIYEihv~~F~~~~~~g~~~~Gt~~g~~e~~~~~l~Gi~~~L-dyLk~LGvtaI~L~Pi~e~~~~de~~~~~~  505 (921)
T 2wan_A          427 PANPVDEVIYEAHVRDFSIDANSGMKNKGKYLAFTEHGTKGPDHVKTGI-DSLKELGITTVQLQPVEEFNSIDETQPDTY  505 (921)
T ss_dssp             CSSGGGCCEEEECHHHHHCSTTSCCSSTTSGGGGGCCSCBCGGGCBCHH-HHHHHHTCCEEEESCCEEESSSCTTSTTSC
T ss_pred             CCCchhcEEEEEEcCcccCCCCCCCCCCCCeeheeccccccccccchhh-HHHHHcCCCEEEeCCccccCcccccccCcC
Confidence            4688999999999999997665544   778777764           8 999999999999999999864        3


Q ss_pred             CCCCCccCCCCcCCC-----CCC--HHHHHHHHHHHHHcCCEEEEecCCCCCCccc-hhHHhhhcCCCCccccccchhcc
Q psy8670          93 DFGYDISDYLSFEPL-----FGD--LKDFETLKERLHALGIKILLDFVPNHTSNQH-EWFKKSLANIPPYKCASLLARLH  164 (224)
Q Consensus        93 ~~gY~~~d~~~v~~~-----~G~--~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~-~w~~~~~~~~~~~~~~f~w~~~~  164 (224)
                      +|||++.||++++++     +|+  ++||++||++||++||+||||+|+||++.++ .||+...      ++||....  
T Consensus       506 ~wGYd~~dy~ap~~~y~~dp~Gt~~~~dfk~LV~~aH~~GI~VILDvV~NHt~~~~~~~f~~~~------p~y~~~~~--  577 (921)
T 2wan_A          506 NWGYDPRNYNVPEGAYATTPEGTARITELKQLIQSLHQQRIGVNMDVVYNHTFDVMVSDFDKIV------PQYYYRTD--  577 (921)
T ss_dssp             CCCCSEEEEEEECGGGSSCSSTTHHHHHHHHHHHHHHHTTCEEEEEECTTCCSCSSSSHHHHHS------TTTTBCBC--
T ss_pred             CcCCCCcCCCCCCcccccCCCCCccHHHHHHHHHHHHHcCCEEEEEEccccccccccccccCCC------CCeEEEcC--
Confidence            699999999754444     566  7999999999999999999999999999998 7998654      23443211  


Q ss_pred             cCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         165 DLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       165 ~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                         ..+.+..  ...-.+++|+.++.+++
T Consensus       578 ---~~g~~~~--~~g~~~dln~~~p~Vr~  601 (921)
T 2wan_A          578 ---SNGNYTN--GSGCGNEFATEHPMAQK  601 (921)
T ss_dssp             ---TTSCBCC--TTSSSCCBCTTSHHHHH
T ss_pred             ---CCCcccC--CCCcccccccCCHHHHH
Confidence               1111111  11113689999999876

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=99.94  E-value=6.9e-27  Score=216.29  Aligned_cols=142  Identities=15%  Similarity=0.158  Sum_probs=110.1

Q ss_pred             CCCceEEEEecccccCcCCCCCCCH-HHHHHHHHHHHHHcCCCeEEEcCcccC---------CCCCCCCCccCCCCcC--
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDGVGDL-KGMIEKLPEHLHDLGVGAVWISPIFKS---------PMADFGYDISDYLSFE--  105 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~~g~l-~~~~~~l~~~l~~lG~~~i~l~Pi~~~---------~~~~~gY~~~d~~~v~--  105 (224)
                      -++.+|||+|.+.+.+..   +|+| ++++++| +|||+||||+|||+|+++.         +..++||+   |+++|  
T Consensus        14 ~~~~vi~q~F~w~~~~~~---gGd~~~gi~~~L-dyLk~LGvt~IwL~Pi~e~~~~~~~~~~~~~~~GY~---~~~id~~   86 (527)
T 1gcy_A           14 GGDEIILQGFHWNVVREA---PNDWYNILRQQA-ATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYF---WHDFNKN   86 (527)
T ss_dssp             GGCCCEEECCCTTHHHHS---TTTHHHHHHHHH-HHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTT---CSSSCSC
T ss_pred             CCCcEEEEEEEcCCCccc---CCcHHHHHHHHH-HHHHhcCCCEEEeCCccccccccccCCCCCCCCCcc---cccCCCC
Confidence            457899999977654432   5899 9999999 9999999999999999943         22579999   99999  


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccch---hHHhhhcCCCCccccccchhcc-cCCC-cceeecccccCC
Q psy8670         106 PLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE---WFKKSLANIPPYKCASLLARLH-DLGV-GAVWISPIFKSP  180 (224)
Q Consensus       106 ~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~---w~~~~~~~~~~~~~~f~w~~~~-~lG~-~~~w~~p~f~~~  180 (224)
                      |+|||++||++||++||++||+||+|+|+||++.+|+   |+       .++.+||.-.... +... +..|....|...
T Consensus        87 p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NHt~~~~~~~~~~-------~~~~~~y~~~~~~~~~~~~~~~~~~~~f~~~  159 (527)
T 1gcy_A           87 GRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEIN-------LPAGQGFWRNDCADPGNYPNDCDDGDRFIGG  159 (527)
T ss_dssp             SSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCSSCSCC-------CCSSSSCBGGGSCCCSSSCBTTBSSCCSTTS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEEEeecCcCCCCCCcccc-------CCCcchhcccccCCCCCcccCcccCcccccc
Confidence            9999999999999999999999999999999999998   76       2566666422100 1011 111111123356


Q ss_pred             CCCCCCcchhhHH
Q psy8670         181 MADFGYDISDYLR  193 (224)
Q Consensus       181 ~~dlny~n~d~~~  193 (224)
                      ++|||+.||++++
T Consensus       160 ~~dLn~~np~Vr~  172 (527)
T 1gcy_A          160 DADLNTGHPQVYG  172 (527)
T ss_dssp             TTBBCTTSHHHHH
T ss_pred             CCccccCCHHHHH
Confidence            7999999999887

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=99.94  E-value=4.1e-27  Score=221.45  Aligned_cols=138  Identities=24%  Similarity=0.432  Sum_probs=113.8

Q ss_pred             CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC-CCCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-MADFGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~-~~~~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      |++.+|||+|+++|+.     .|+|++++++| +||++||||+|||+|+++.+ ..+|||++.||++++|+||+++||++
T Consensus       134 ~~~~~iYe~~v~~f~~-----~G~~~~~~~~L-~yl~~lGv~~v~l~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~~~~~  207 (618)
T 3m07_A          134 WEQAVVYEMHTGTFTP-----EGTFRAAIAKL-PYLAELGVTVIEVMPVAQFGGERGWGYDGVLLYAPHSAYGTPDDFKA  207 (618)
T ss_dssp             GGGCCEEEECHHHHSS-----SCSHHHHHTTH-HHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECTTTCCHHHHHH
T ss_pred             hhhCeEEEEehhhcCC-----CCCHHHHHHHH-HHHHHcCCCEEEeCChhccCCCCCCCcCcccccccCcCcCCHHHHHH
Confidence            6889999999999976     58999999999 99999999999999998864 35799999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH--H
Q psy8670         117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR--I  194 (224)
Q Consensus       117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~--i  194 (224)
                      ||++||++||+||+|+|+||++.+++|+...      ...||.-..      ...|        .+++||.++++++  +
T Consensus       208 lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~------~~~~~~~~~------~~~w--------g~~ln~~~p~V~~~i~  267 (618)
T 3m07_A          208 FIDAAHGYGLSVVLDIVLNHFGPEGNYLPLL------APAFFHKER------MTPW--------GNGIAYDVDAVRRYII  267 (618)
T ss_dssp             HHHHHHHTTCEEEEEECCSCCCSSSCCHHHH------CGGGEEEEE------EETT--------EEEECTTSHHHHHHHH
T ss_pred             HHHHHHHCCCEEEEeecCccCCCCccccccc------CchhhcCCC------CCCC--------CCCcCCCCHHHHHHHH
Confidence            9999999999999999999999999999732      123442110      1111        1468999999887  3


Q ss_pred             HHHHhhc
Q psy8670         195 KILLDFV  201 (224)
Q Consensus       195 ~ii~d~v  201 (224)
                      ..+..++
T Consensus       268 ~~~~~w~  274 (618)
T 3m07_A          268 EAPLYWL  274 (618)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444444

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=99.94  E-value=2.6e-27  Score=229.72  Aligned_cols=124  Identities=20%  Similarity=0.360  Sum_probs=103.8

Q ss_pred             ccCCCceEEEEecccccCcCCC----CCCCHHHH-------HHHHHHHHHHcCCCeEEEcCcccCCC-------------
Q psy8670          36 EWWQTSVFYHLYPRSFKDSNGD----GVGDLKGM-------IEKLPEHLHDLGVGAVWISPIFKSPM-------------   91 (224)
Q Consensus        36 ~w~~~~viY~i~~~~f~~~~~~----~~g~l~~~-------~~~l~~~l~~lG~~~i~l~Pi~~~~~-------------   91 (224)
                      ..+++.+|||+|+++|+..+++    ..|++.++       +++| +|||+||||+||||||++++.             
T Consensus       248 ~~~~~~vIYE~HVr~ft~~~~~~~~~~~Gtf~g~~~~~~~~ie~L-~yLk~LGVtaveLmPv~e~~~~~~~~~~~~~~d~  326 (884)
T 4aio_A          248 DSFSDITIYELHIRDFSAHDGTVDSDSRGGFRAFAYQASAGMEHL-RKLSDAGLTHVHLLPSFHFAGVDDIKSNWKFVDE  326 (884)
T ss_dssp             SCGGGCCEEEECHHHHHTTCTTSCTTTTTSGGGGSCTTSHHHHHH-HHHHHHTCCEEEECCCEEESSSCSCGGGCCCCCH
T ss_pred             CCcccCEEEEEEcCccccCCCCCCccccCcccccccchhhHHHHh-HHHHHcCCCEEEeccccccCcccccccccccccc
Confidence            3478899999999999865433    45888765       6788 999999999999999998742             


Q ss_pred             -------------------------CCCCCCccCCCCcCCCCCC-------HHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670          92 -------------------------ADFGYDISDYLSFEPLFGD-------LKDFETLKERLHALGIKILLDFVPNHTSN  139 (224)
Q Consensus        92 -------------------------~~~gY~~~d~~~v~~~~G~-------~~~~~~lv~~~h~~gi~vilD~v~nh~~~  139 (224)
                                               .+|||++.+|++++++|||       .+||++||++||++||+||+|+|+||++.
T Consensus       327 ~~l~~~~~~~~~~~~l~~~~~~~~~~~WGYd~~~y~a~~~~ygt~~d~~~~~~efk~LV~~aH~~GIkVIlDvV~NHts~  406 (884)
T 4aio_A          327 CELATFPPGSDMQQAAVVAIQEEDPYNWGYNPVLWGVPKGSYASDPDGPSRIIEYRQMVQALNRIGLRVVMDVVYNHLDS  406 (884)
T ss_dssp             HHHTTSCTTCSHHHHHHHHHTTTSSCCCCCCEEEEEEECGGGSSCSSTTHHHHHHHHHHHHHHHTTCEEEEEECCSBCSC
T ss_pred             ccccccCCchHHHHhhhhhhhhccccccCcCcccccCCCcccccCccccchHHHHHHHHHHHHhcCCceeeeeccccccC
Confidence                                     4699999999999999998       45799999999999999999999999999


Q ss_pred             cchhHHhhhc-CCCCccccccc
Q psy8670         140 QHEWFKKSLA-NIPPYKCASLL  160 (224)
Q Consensus       140 ~~~w~~~~~~-~~~~~~~~f~w  160 (224)
                      +|+||.++.. +..++..|+.+
T Consensus       407 ~h~wf~~~~~~~~~~~~~~~~~  428 (884)
T 4aio_A          407 SGPCGISSVLDKIVPGYYVRRD  428 (884)
T ss_dssp             CSSSSTTCCHHHHSTTTSBCBC
T ss_pred             CCcchhhccccccCcceeeccC
Confidence            9999987653 23444455543

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=99.94  E-value=8.3e-27  Score=223.46  Aligned_cols=142  Identities=19%  Similarity=0.310  Sum_probs=113.1

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHH-HHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670          39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEK-LPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        39 ~~~viY~i~~~~f~~~~~~~~g~l~~~~~~-l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      +..+|||+|+++|+.  .++.|+|++++++ | +|||+||||+|||+||++++. .+|||++.||++++|+|||++||++
T Consensus       179 ~~~~IYE~hv~~~~~--~~~~Gt~~~l~~~~L-~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~dy~a~~~~~Gt~~df~~  255 (755)
T 3aml_A          179 DAPRIYEAHVGMSGE--EPEVSTYREFADNVL-PRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRSGTPEDLKY  255 (755)
T ss_dssp             SSCEEEEEESTTCSS--SSSCCCHHHHHHHTH-HHHHHTTCCEEEEESCEECSCGGGTTCSCSEEEEECGGGCCHHHHHH
T ss_pred             CCCEEEEEeeecccc--CCCCCCHHHHHHHHH-HHHHHcCCCEEEECchhcCCCCCCCCCccCCCCccCCCCCCHHHHHH
Confidence            568999999999974  3457999999984 7 999999999999999999863 5799999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEecCCCCCCccchhHHhhhc-CCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLA-NIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~-~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      ||++||++||+||+|+|+||++.++++...... +...+..||..+.   .|....|.       ..++||.++++++
T Consensus       256 lv~~~H~~Gi~VilD~V~NH~~~~~~~g~~~fd~~~~~~~~yf~~~~---~g~~~~w~-------~~~lN~~~p~V~~  323 (755)
T 3aml_A          256 LVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGD---RGYHKLWD-------SRLFNYANWEVLR  323 (755)
T ss_dssp             HHHHHHHTTCEEEEEECCSCBCCCTTTSGGGGCSSCCGGGSSBCCGG---GGEETTTT-------EECBCTTSHHHHH
T ss_pred             HHHHHHHCCCEEEEEEeccccccccccchhccccCCCCCcceeecCC---CCccCCCC-------CceeccCCHHHHH
Confidence            999999999999999999999998865322222 1234566775221   12111121       2589999999886

>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A

Probab=99.94  E-value=2.7e-27  Score=213.38  Aligned_cols=140  Identities=16%  Similarity=0.224  Sum_probs=108.9

Q ss_pred             CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCC----------CCCCCccCCCCcCCC
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA----------DFGYDISDYLSFEPL  107 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~----------~~gY~~~d~~~v~~~  107 (224)
                      .++.+|||+|+++           |++++++| +|||+||||+|||+|+++....          .|||++.||+.+||+
T Consensus         3 ~~~~~~~q~f~~~-----------~~~i~~~l-~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~~~~~gY~~~~y~~~~~~   70 (422)
T 1ua7_A            3 IKSGTILHAWNWS-----------FNTLKHNM-KDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRY   70 (422)
T ss_dssp             TTTSCEEECTTBC-----------HHHHHHTH-HHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEETT
T ss_pred             CcCcEEEEEecCC-----------HHHHHHHH-HHHHHcCCCEEEeCCccccccCCcCcCccCCccccccceeeeccCCC
Confidence            4578999998874           58899999 9999999999999999875321          479999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCccee-ecccccCCCCCCCC
Q psy8670         108 FGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVW-ISPIFKSPMADFGY  186 (224)
Q Consensus       108 ~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w-~~p~f~~~~~dlny  186 (224)
                      |||++||++||++||++||+||+|+|+||++.+++|+.....   .+.+||.... ........+ ....+..+++++|+
T Consensus        71 ~G~~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dln~  146 (422)
T 1ua7_A           71 LGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVK---SIPNWTHGNT-QIKNWSDRWDVTQNSLLGLYDWNT  146 (422)
T ss_dssp             TEEHHHHHHHHHHHHTTTCEEEEEECCSBCCSCTTTSCHHHH---TSTTCEEECC-BCCCTTCHHHHHHSBBTTBCEECT
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEeccCcccCCccccCcccc---CCcccccCCC-CCCCcCchhcccccccCCCCcccc
Confidence            999999999999999999999999999999999999865543   3467775311 000111000 00112235689999


Q ss_pred             cchhhHH
Q psy8670         187 DISDYLR  193 (224)
Q Consensus       187 ~n~d~~~  193 (224)
                      .++++++
T Consensus       147 ~~~~v~~  153 (422)
T 1ua7_A          147 QNTQVQS  153 (422)
T ss_dssp             TSHHHHH
T ss_pred             CCHHHHH
Confidence            9999886

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=99.94  E-value=4e-26  Score=221.27  Aligned_cols=143  Identities=21%  Similarity=0.337  Sum_probs=114.8

Q ss_pred             CccCCCceEEEEecccccCcCC------CCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccC------------------C
Q psy8670          35 LEWWQTSVFYHLYPRSFKDSNG------DGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS------------------P   90 (224)
Q Consensus        35 ~~w~~~~viY~i~~~~f~~~~~------~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~------------------~   90 (224)
                      ..||++.+|||+|+++|+...+      ++.|+|++++++| +||++||||+|||+||++.                  .
T Consensus       262 ~~~~~~~vIYElhvr~ft~~~~~~~~~~~~~Gt~~gl~~~L-~yLk~LGvtaV~L~Pi~~~~~~~e~~~~~~~~~~~~~~  340 (877)
T 3faw_A          262 FKGRQDAVIYEAHVRDFTSDQSLDGKLKNQLGTFAAFSEKL-DYLQKLGVTHIQLLPVLSYFYVNEMDKSRSTAYTSSDN  340 (877)
T ss_dssp             CCSGGGCEEEEECTTGGGCCGGGTTTCSSCTTSHHHHGGGH-HHHHHHTCSEEEESCCBCBSSCBTTCCCCCCSCCSSSC
T ss_pred             CCCccccEEEEEEchHhcCCCCCCccccCCCCCHHHHHHHH-HHHHHcCCCEEEEcchhcccccccccccccccccCCCC
Confidence            3568999999999999986322      2349999999999 9999999999999999973                  1


Q ss_pred             CCCCCCCccCCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchh
Q psy8670          91 MADFGYDISDYLSFEPLFGD--------LKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLAR  162 (224)
Q Consensus        91 ~~~~gY~~~d~~~v~~~~G~--------~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~  162 (224)
                      ..+|||++.+|++++++||+        ++||++||++||++||+||+|+|+||++.+++|..       ..++||.+.+
T Consensus       341 ~ynwGY~~~~~~a~~~~yGt~p~~~~~~~~efk~lV~~~H~~GI~VILDvV~NH~a~~~~~~~-------~~p~yy~~~~  413 (877)
T 3faw_A          341 NYNWGYDPQSYFALSGMYSEKPKDPSARIAELKQLIHDIHKRGMGVILDVVYNHTAKTYLFED-------IEPNYYHFMN  413 (877)
T ss_dssp             SCCCSCSBSCSSSBCSTTCSCTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTCCSCTHHHHT-------TSTTTSBCBC
T ss_pred             CCccCcCcCccccccccccCCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeeccccCcccccc-------CCCceeeeeC
Confidence            23499999999999999999        79999999999999999999999999999988754       3467776533


Q ss_pred             cccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       163 ~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      .  .|.   ...+.   ...++|+.++.+++
T Consensus       414 ~--dg~---~~~~~---~g~~ln~~~p~Vr~  436 (877)
T 3faw_A          414 E--DGS---PRESF---GGGRLGTTHAMSRR  436 (877)
T ss_dssp             T--TSC---BCEET---TEECBCTTSHHHHH
T ss_pred             C--CCC---eeccC---CCcccccCCHHHHH
Confidence            2  111   11111   12578999998776

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=99.93  E-value=5.8e-26  Score=216.88  Aligned_cols=142  Identities=24%  Similarity=0.380  Sum_probs=111.1

Q ss_pred             ccCCCceEEEEecccccCcCC------CCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccC-------------------C
Q psy8670          36 EWWQTSVFYHLYPRSFKDSNG------DGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-------------------P   90 (224)
Q Consensus        36 ~w~~~~viY~i~~~~f~~~~~------~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~-------------------~   90 (224)
                      .++++.+|||+|+++|+...+      ...|+|++++++| +|||+||||+|||+||++.                   .
T Consensus       147 ~~~~~~viYE~hv~~f~~~~~~~~~~~~~~Gt~~gi~~~L-~yLk~LGvt~I~L~Pi~~~~~~~e~~~~~~~~~~~~~~~  225 (714)
T 2ya0_A          147 KTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKL-DYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNS  225 (714)
T ss_dssp             SSGGGCCEEEECHHHHHCCGGGTTTCSSCTTSHHHHHTTH-HHHHHHTCSEEEESCCBCBSSCBGGGTTSCCCSCCSSSC
T ss_pred             CCccccEEEEEEehhhccCCCCccccccCCcCHHHHHHHh-HHHHHcCCCEEEECCcccccccCcccccccccccccCcC
Confidence            347899999999999985321      2349999999999 9999999999999999973                   1


Q ss_pred             CCCCCCCccCCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchh
Q psy8670          91 MADFGYDISDYLSFEPLFGD--------LKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLAR  162 (224)
Q Consensus        91 ~~~~gY~~~d~~~v~~~~G~--------~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~  162 (224)
                      ..+|||++.+|++++++||+        .+||++||++||++||+||+|+|+||++.++.|-.       ..++||.+.+
T Consensus       226 ~~~wGY~~~~~~a~~~~yg~~~~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~-------~~~~yy~~~~  298 (714)
T 2ya0_A          226 NYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDLFED-------LEPNYYHFMD  298 (714)
T ss_dssp             SCCCSCSBSCSSSBCSTTSSCTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTBCSCHHHHHT-------TSTTTSBCBC
T ss_pred             cCccCCCCccCcccChhhccCCCCccchHHHHHHHHHHHHHCCCEEEEEeccCcccCcccccc-------cCCCeeEEeC
Confidence            13599999999999999998        79999999999999999999999999999875432       3457776532


Q ss_pred             cccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       163 ~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      .  .|   ....+ +.  ..++|+.++.+++
T Consensus       299 ~--~g---~~~~~-~~--~~~l~~~~~~v~~  321 (714)
T 2ya0_A          299 A--DG---TPRTS-FG--GGRLGTTHHMTKR  321 (714)
T ss_dssp             T--TC---CBCEE-TT--EEBBCTTSHHHHH
T ss_pred             C--CC---CCccc-cC--CCCcccCCHHHHH
Confidence            1  11   11111 11  1468888888765

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=99.93  E-value=1.3e-26  Score=215.95  Aligned_cols=111  Identities=27%  Similarity=0.434  Sum_probs=101.3

Q ss_pred             ccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHH
Q psy8670          36 EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDF  114 (224)
Q Consensus        36 ~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~  114 (224)
                      ..+++.+|||+|+++|+.     .|+|++++++| +||++||||+|||+|+++.+. .+|||++.||++++|+|||++||
T Consensus        97 ~~~~~~~iYe~~~~~f~~-----~G~~~~~~~~l-~~l~~lG~~~v~l~Pi~~~~~~~~~GY~~~~~~~~~~~~Gt~~d~  170 (558)
T 3vgf_A           97 LKKEDLIIYEIHVGTFTP-----EGTFEGVIRKL-DYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGF  170 (558)
T ss_dssp             CCGGGCCEEEECHHHHSS-----SCSHHHHHHTH-HHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGTHHHHH
T ss_pred             CCccccEEEEEeHHHhCC-----CCCHHHHHHHH-HHHHHcCCcEEEECCcccCCCCCCcCcccccccccccccCCHHHH
Confidence            347889999999999986     58999999999 999999999999999998754 56899999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCcccccc
Q psy8670         115 ETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASL  159 (224)
Q Consensus       115 ~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~  159 (224)
                      ++||++||++||+||+|+|+||++.+++|+.       .+.+||.
T Consensus       171 ~~lv~~~h~~Gi~VilD~V~NH~~~~~~~~~-------~~~~~~~  208 (558)
T 3vgf_A          171 RKLVDEAHKKGLGVILDVVYNHVGPEGNYMV-------KLGPYFS  208 (558)
T ss_dssp             HHHHHHHHHTTCEEEEEECCSCCCSSSCCGG-------GTSCCEE
T ss_pred             HHHHHHHHHcCCEEEEEEeeccccCCCCccc-------ccCCccC
Confidence            9999999999999999999999999999987       4455663

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=99.93  E-value=1.4e-25  Score=213.60  Aligned_cols=138  Identities=20%  Similarity=0.375  Sum_probs=110.2

Q ss_pred             CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      .+..+|||+|+++|+.     .|++++++++|++|||+||||+|||+|+++++. .+|||++.||++++++|||++||++
T Consensus       243 ~~~~~IYE~h~~s~~~-----~G~~~~l~~~l~~yLk~lG~t~I~L~Pi~e~~~~~~wGY~~~~y~a~~~~yGt~~dfk~  317 (722)
T 3k1d_A          243 NEAMSTYEVHLGSWRP-----GLSYRQLARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPTSRFGTPDDFRA  317 (722)
T ss_dssp             GSCCEEEEECTTTSST-----TCCHHHHHHHHHHHHHHHTCSEEEESCCEECSCGGGTTCSCSEEEEECGGGCCHHHHHH
T ss_pred             CCCeEEEEEehhhccC-----CCCHHHHHHHHHHHHHHcCCCeEEECCcccCCCCCCCCCCcccCcCccccCCCHHHHHH
Confidence            3567999999999986     399999999988999999999999999999865 3689999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      ||++||++||+||+|+|+||++.+. |+.....+.    .+|...+. ..|....|.+       .++||.++++++
T Consensus       318 lV~~~H~~GI~VilD~V~NH~~~~~-~~~~~fdg~----~~y~~~d~-~~~~~~~Wg~-------~~ln~~~p~Vr~  381 (722)
T 3k1d_A          318 LVDALHQAGIGVIVDWVPAHFPKDA-WALGRFDGT----PLYEHSDP-KRGEQLDWGT-------YVFDFGRPEVRN  381 (722)
T ss_dssp             HHHHHHHTTCEEEEEECTTCCCCCT-TTTTTTTSS----CCSBCCCC-CSSSTTCCCC-------CCBCTTSHHHHH
T ss_pred             HHHHHHHcCCEEEEEEEeeccCCcc-chhhcCCCC----cccccCCc-ccCccCCCCC-------eeecCCCHHHHH
Confidence            9999999999999999999999874 443333332    23321111 1222233322       578999999887

>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*

Probab=99.93  E-value=3.1e-26  Score=209.20  Aligned_cols=96  Identities=24%  Similarity=0.318  Sum_probs=85.9

Q ss_pred             CCccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCC-----CCCCccCCCCcCCCC
Q psy8670          34 PLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD-----FGYDISDYLSFEPLF  108 (224)
Q Consensus        34 ~~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~-----~gY~~~d~~~v~~~~  108 (224)
                      |+.|-++.+|+|+|.+.           |+++++++++|||+||||+|||+|+++++..+     +||++.|| +|||+|
T Consensus         4 ~~~~~~~~~i~~~F~w~-----------~~gi~~~~ldyL~~LGv~~I~l~Pi~~~~~~~~~~~~~gYd~~dy-~idp~~   71 (471)
T 1jae_A            4 ANFASGRNSIVHLFEWK-----------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSY-IINTRS   71 (471)
T ss_dssp             CCCCTTCEEEEEETTCC-----------HHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCS-CSEETT
T ss_pred             CCCCCCCCeEEEEecCC-----------HHHHHHHHHHHHHHcCCCEEEeCccccccCCCCCCcccccccccc-cccCCC
Confidence            34456789999988766           58899994499999999999999999986532     58999996 999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEecCCCCCCccc
Q psy8670         109 GDLKDFETLKERLHALGIKILLDFVPNHTSNQH  141 (224)
Q Consensus       109 G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~  141 (224)
                      ||++||++||++||++||+||+|+|+||++.++
T Consensus        72 Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~  104 (471)
T 1jae_A           72 GDESAFTDMTRRCNDAGVRIYVDAVINHMTGMN  104 (471)
T ss_dssp             EEHHHHHHHHHHHHHTTCEEEEEECCSBCCSSC
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEEecccccCCC
Confidence            999999999999999999999999999999986

>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1

Probab=99.92  E-value=5.6e-26  Score=214.88  Aligned_cols=102  Identities=26%  Similarity=0.450  Sum_probs=95.3

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEcCcccC-CCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670          59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT  137 (224)
Q Consensus        59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~-~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~  137 (224)
                      .|+|++++++| +||++||||+|||+||+++ +.++|||++.||++|||+||+++||++||++||++||+||+|+|+||+
T Consensus        13 gGtf~gi~~~L-dYLk~LGVtaIwLsPi~~~~~gs~hGYdv~Dy~~Idp~lGt~edfk~LV~aaH~~GIkVIlDvV~NHt   91 (720)
T 1iv8_A           13 NFNFGDVIDNL-WYFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDIVPNHM   91 (720)
T ss_dssp             TBCHHHHHHTH-HHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEECTTTTHHHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred             CCCHHHHHHHH-HHHHhCCCCEEEECCcccCCCCCCCCCCCccCCCcCccCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence            68999999999 9999999999999999997 456799999999999999999999999999999999999999999999


Q ss_pred             C--ccchhHHhhhc-C-CCCccccccch
Q psy8670         138 S--NQHEWFKKSLA-N-IPPYKCASLLA  161 (224)
Q Consensus       138 ~--~~~~w~~~~~~-~-~~~~~~~f~w~  161 (224)
                      +  .+++||++.++ + .++|.+||.|.
T Consensus        92 a~~~~~~wf~d~l~~G~~s~y~d~f~~~  119 (720)
T 1iv8_A           92 AVNSLNWRLMDVLXMGXXSXYYTYFDFF  119 (720)
T ss_dssp             ECCTTCHHHHHHHHHGGGSTTGGGBCBC
T ss_pred             cCccccHHHHHhhhcccccccccceeec
Confidence            9  99999988764 3 68999999884

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=99.92  E-value=4.3e-26  Score=224.81  Aligned_cols=142  Identities=18%  Similarity=0.216  Sum_probs=111.3

Q ss_pred             eEEEEecccccCcCCCCC----CCHHHHHH-------HHHHHHHHcCCCeEEEcCcccC---------------------
Q psy8670          42 VFYHLYPRSFKDSNGDGV----GDLKGMIE-------KLPEHLHDLGVGAVWISPIFKS---------------------   89 (224)
Q Consensus        42 viY~i~~~~f~~~~~~~~----g~l~~~~~-------~l~~~l~~lG~~~i~l~Pi~~~---------------------   89 (224)
                      +|||+|+++|+..++++.    |+|.++++       +| +||++||||+||||||++.                     
T Consensus       425 vIYE~hvr~ft~~~~~~~~~~~Gt~~g~~e~~~~~i~~L-~~L~~lGvt~i~LlPv~~~~~v~e~~~~~~~~~~p~~~~~  503 (1083)
T 2fhf_A          425 TIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHL-KQLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLC  503 (1083)
T ss_dssp             EEEEECHHHHHTTCTTSCGGGTTSGGGGGCTTSHHHHHH-HHHHHHTCCEEEESCCEEESSSCCCGGGCCCTTSBHHHHH
T ss_pred             EEEEEecchhcCCCCCCCcCCCCChhhhhhhhhhhHHHH-HHHHhcCCCEEEECCccccccccccccccccccccccccc
Confidence            999999999998877655    99999976       58 9999999999999999963                     


Q ss_pred             -------------------------------------------------CCCCCCCCccCCCCcCCCCCC-------HHH
Q psy8670          90 -------------------------------------------------PMADFGYDISDYLSFEPLFGD-------LKD  113 (224)
Q Consensus        90 -------------------------------------------------~~~~~gY~~~d~~~v~~~~G~-------~~~  113 (224)
                                                                       ...+|||++.||++++|+||+       ++|
T Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~d~~nwGYd~~~y~a~~~~yGt~p~~~~r~~e  583 (1083)
T 2fhf_A          504 EVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIKE  583 (1083)
T ss_dssp             HHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEEEEEEECSTTSSCCSTTHHHHH
T ss_pred             ccccccccccccccccccccchhhhhcccccccchhhhhhhhhccccccCCCCCCCCcCcCCCcChhhcCCCCccccHHH
Confidence                                                             112499999999999999999       899


Q ss_pred             HHHHHHHHHHc-CCEEEEecCCCCCCccchhHHhhh-cCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhh
Q psy8670         114 FETLKERLHAL-GIKILLDFVPNHTSNQHEWFKKSL-ANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDY  191 (224)
Q Consensus       114 ~~~lv~~~h~~-gi~vilD~v~nh~~~~~~w~~~~~-~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~  191 (224)
                      |++||++||++ ||+||||+|+||++.+++|+.... .+  ..++||.+.+.. .|. ..+.     +...++|+.++.+
T Consensus       584 fk~LV~~~H~~~GI~VILDvV~NHt~~~~~~~~~~~~d~--~~p~yy~~~~p~-~g~-~~~~-----tg~~dln~~~p~V  654 (1083)
T 2fhf_A          584 FRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDK--IVPWYYQRLNET-TGS-VESA-----TCCSDSAPEHRMF  654 (1083)
T ss_dssp             HHHHHHHHHHTSCCEEEEEECTTEESCCSSSCTTCCHHH--HSTTTSBCBCTT-TCC-BCCT-----TSSEEBCTTSHHH
T ss_pred             HHHHHHHHHhhcCCEEEEEeccccCcCCCccchhccccC--CCCCceeecCCC-CCc-eecC-----CccCCcCcCCHHH
Confidence            99999999998 999999999999999999986322 11  234677654321 111 1111     2234689999998


Q ss_pred             HH
Q psy8670         192 LR  193 (224)
Q Consensus       192 ~~  193 (224)
                      ++
T Consensus       655 r~  656 (1083)
T 2fhf_A          655 AK  656 (1083)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=99.92  E-value=5.5e-25  Score=216.58  Aligned_cols=141  Identities=24%  Similarity=0.372  Sum_probs=110.2

Q ss_pred             cCCCceEEEEecccccCcCC------CCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC-------------------C
Q psy8670          37 WWQTSVFYHLYPRSFKDSNG------DGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-------------------M   91 (224)
Q Consensus        37 w~~~~viY~i~~~~f~~~~~------~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~-------------------~   91 (224)
                      .+++.+|||+|+++|+....      ...|+|++++++| +|||+||||+||||||++.+                   .
T Consensus       455 ~~~~~vIYE~hv~~ft~~~~~~~~~~~~~Gt~~gl~~~L-dyLk~LGvtaV~L~Pv~~~~~~~e~~~~~~~~~y~~~~~~  533 (1014)
T 2ya1_A          455 TREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKL-DYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSN  533 (1014)
T ss_dssp             SGGGCCEEEECHHHHHCCGGGTTTCSSCTTSHHHHHTTH-HHHHHHTCSEEEESCCBCBSSCBGGGTTSCCCSCCSSSCS
T ss_pred             CccccEEEEEecCCCCCCCCccccccCCCcCHHHHHHHh-HHHHHcCCCeEEecCcccccccccccccccccccccCcCC
Confidence            46789999999999985321      2359999999999 99999999999999999731                   1


Q ss_pred             CCCCCCccCCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhc
Q psy8670          92 ADFGYDISDYLSFEPLFGD--------LKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARL  163 (224)
Q Consensus        92 ~~~gY~~~d~~~v~~~~G~--------~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~  163 (224)
                      .+|||++.+|++++++||+        ++||++||++||++||+||||+|+||++.++.|-.       ..++||.+.+.
T Consensus       534 ynwGY~~~~y~a~~~~ygt~p~~~~~~~~efk~lV~~~H~~GI~VIlDvV~NHt~~~~~~~~-------~~~~yy~~~~~  606 (1014)
T 2ya1_A          534 YNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDLFED-------LEPNYYHFMDA  606 (1014)
T ss_dssp             CCCSCSBSCSSSBCSTTCSCTTCTTHHHHHHHHHHHHHHTTTCEEEEEECTTCCSCHHHHHT-------TSTTTSBCBCT
T ss_pred             cccCCCcCcCccccccccCCCccccchHHHHHHHHHHHHHcCCEEEEEEecccccccccccc-------CCCCeeEEeCC
Confidence            3599999999999999998        79999999999999999999999999999875532       34677764321


Q ss_pred             ccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         164 HDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       164 ~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                        .|   ....+ +.  ..++|+.++.+++
T Consensus       607 --~g---~~~~~-~~--~~~l~~~~~~vr~  628 (1014)
T 2ya1_A          607 --DG---TPRTS-FG--GGRLGTTHHMTKR  628 (1014)
T ss_dssp             --TC---CBCEE-TT--EECBCTTSHHHHH
T ss_pred             --CC---CcccC-CC--CCCcCcCCHHHHH
Confidence              11   11111 11  1467888888765

>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A*

Probab=99.91  E-value=3.6e-25  Score=213.11  Aligned_cols=124  Identities=17%  Similarity=0.284  Sum_probs=102.3

Q ss_pred             CCccCCCceEEEEecccccCcCCCCCCCH-HHHHHHHHHHHHHcCCCeEEEcCcccCCCC--------CCCCCccCCCCc
Q psy8670          34 PLEWWQTSVFYHLYPRSFKDSNGDGVGDL-KGMIEKLPEHLHDLGVGAVWISPIFKSPMA--------DFGYDISDYLSF  104 (224)
Q Consensus        34 ~~~w~~~~viY~i~~~~f~~~~~~~~g~l-~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~--------~~gY~~~d~~~v  104 (224)
                      ++.||++.||||+|+ +|.....++.+.. ++++++| +||++||||+|||+|+++++..        ++||++.||+++
T Consensus       604 ~~~~~~~~ViYe~f~-~~~s~~~~g~~~~~~gi~~~l-~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~GY~~~d~~~i  681 (844)
T 3aie_A          604 QNAALDSRVMFEGFS-NFQAFATKKEEYTNVVIAKNV-DKFAEWGVTDFEMAPQYVSSTDGSFLDSVIQNGYAFTDRYDL  681 (844)
T ss_dssp             CSHHHHTCCEEECCC-TTCCCCSSGGGCHHHHHHHTH-HHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCS
T ss_pred             cCCccCceEEEEeCC-CcccCCCCCCcccHHHHHHHH-HHHHHCCCCeEEECCcccCCCCCccccccCCCCCccccCccC
Confidence            456788899999988 3433333333443 8999999 9999999999999999998754        699999999999


Q ss_pred             C----CCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCC--ccchhHHhhhcC-CCCcccccc
Q psy8670         105 E----PLFGDLKDFETLKERLHALGIKILLDFVPNHTS--NQHEWFKKSLAN-IPPYKCASL  159 (224)
Q Consensus       105 ~----~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~--~~~~w~~~~~~~-~~~~~~~f~  159 (224)
                      +    |+||+++||++||++||++||+||+|+|+||++  ..++||...+.. .+.+.+++.
T Consensus       682 ~es~~~~~Gt~~df~~lv~~~H~~GI~VilD~V~NH~~~~d~~~~~~~~~~~~~~~~~~~~~  743 (844)
T 3aie_A          682 GISKPNKYGTADDLVKAIKALHSKGIKVMADWVPDQMYALPEKEVVTATRVDKYGTPVAGSQ  743 (844)
T ss_dssp             SCSSCBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEECTTSCBCTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccCcccCCCCCcceeEeeccCCCCcccccc
Confidence            9    999999999999999999999999999999995  678898766533 445555553

>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*

Probab=99.91  E-value=1.5e-24  Score=196.83  Aligned_cols=91  Identities=22%  Similarity=0.331  Sum_probs=80.3

Q ss_pred             CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCC---CCCCccCCCCcCCCCCCHHHHHH
Q psy8670          40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD---FGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~---~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      +.+|+|.|.+           +|+|+++++++|||+||||+|||+||++++...   +||++.+| +|||+|||++||++
T Consensus         2 ~~~~~q~F~w-----------~~~gi~~~lldyL~~LGv~~I~l~Pi~~~~~~~~~~~gY~~~~y-~idp~~Gt~~dfk~   69 (448)
T 1g94_A            2 PTTFVHLFEW-----------NWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY-ELQSRGGNRAQFID   69 (448)
T ss_dssp             CCCEEEETTC-----------CHHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCS-CSCBTTBCHHHHHH
T ss_pred             CCEEEEEecC-----------cHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCccccccccc-ccCCCCCCHHHHHH
Confidence            3577786544           479999995599999999999999999986532   69999986 99999999999999


Q ss_pred             HHHHHHHcCCEEEEecCCCCCCccch
Q psy8670         117 LKERLHALGIKILLDFVPNHTSNQHE  142 (224)
Q Consensus       117 lv~~~h~~gi~vilD~v~nh~~~~~~  142 (224)
                      ||++||++||+||+|+|+||++.+++
T Consensus        70 Lv~~aH~~Gi~VilD~V~NH~~~~~~   95 (448)
T 1g94_A           70 MVNRCSAAGVDIYVDTLINHMAAGSG   95 (448)
T ss_dssp             HHHHHHHTTCEEEEEEECSEECSSCE
T ss_pred             HHHHHHHCCCEEEEEEeeccccCCCC
Confidence            99999999999999999999999874

>3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str}

Probab=99.91  E-value=4.1e-25  Score=206.74  Aligned_cols=102  Identities=24%  Similarity=0.420  Sum_probs=95.5

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEcCcccC-CCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670          59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT  137 (224)
Q Consensus        59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~-~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~  137 (224)
                      .|+|++++++| +||++|||++|||+|++++ +.+++||++.||+++||+|||++||++||++||++||+||+|+|+||+
T Consensus        11 gGtf~~i~~~L-dyL~~LGvt~V~LsPi~e~~~~s~~GYd~~Dy~~vdp~lGt~edfk~LV~~aH~~GI~VilDvV~NH~   89 (704)
T 3hje_A           11 PMKFSEIRNRL-DYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTINDELGGEEEYIRLIDEAKSKGLGIIQDIVPNHM   89 (704)
T ss_dssp             SCCHHHHHTTH-HHHHHHTCSEEEECCCEEESTTCSSSCSEEEEEEECGGGTHHHHHHHHHHHHHHHTCEEEEEECCSEE
T ss_pred             CCCHHHHHHHH-HHHHHCCCCEEEECCCccCCCCCCCCCCCcCCCCcCccCCCHHHHHHHHHHHHHCCCEEEEeeccccc
Confidence            38999999999 9999999999999999998 446799999999999999999999999999999999999999999999


Q ss_pred             Cc--cchhHHhhhc-C-CCCccccccch
Q psy8670         138 SN--QHEWFKKSLA-N-IPPYKCASLLA  161 (224)
Q Consensus       138 ~~--~~~w~~~~~~-~-~~~~~~~f~w~  161 (224)
                      +.  +|+||++.+. + .++|.+||.|.
T Consensus        90 s~~~~~~wf~d~l~~g~~s~Y~d~F~W~  117 (704)
T 3hje_A           90 AVHHTNWRLMDVLKKGRHSRYYNYFDFY  117 (704)
T ss_dssp             ECSTTCHHHHHHHHHGGGSGGGGGBCBC
T ss_pred             ccccchHHHHHHHhcCCCCCCCcccccc
Confidence            87  9999999975 3 78999999985

>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...

Probab=99.90  E-value=3.6e-24  Score=194.24  Aligned_cols=98  Identities=20%  Similarity=0.244  Sum_probs=86.1

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-----C--CCCCCccCCCCcCCCCCCH
Q psy8670          39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-----A--DFGYDISDYLSFEPLFGDL  111 (224)
Q Consensus        39 ~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-----~--~~gY~~~d~~~v~~~~G~~  111 (224)
                      .+.+|.|+|-+.           ++.|++++++||+++|||+|||+|+.++..     .  .+||++.|| +|+|+|||+
T Consensus         9 g~~~i~~~f~W~-----------w~~ia~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~dy-~i~~~~Gt~   76 (496)
T 4gqr_A            9 GRTSIVHLFEWR-----------WVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVSY-KLCTRSGNE   76 (496)
T ss_dssp             TCCEEEEETTCC-----------HHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCS-CSCBTTBCH
T ss_pred             CCcEEEEecCCC-----------HHHHHHHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccCc-eeCCCCCCH
Confidence            357999988775           467999987899999999999999998622     1  249999996 899999999


Q ss_pred             HHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhh
Q psy8670         112 KDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSL  148 (224)
Q Consensus       112 ~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~  148 (224)
                      +||++||++||++||+||+|+|+||++.+++|+....
T Consensus        77 ~df~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~  113 (496)
T 4gqr_A           77 DEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSS  113 (496)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCSEEEETTSCSBSCB
T ss_pred             HHHHHHHHHHHHCCCEEEEEEccCcCCCccccccccC
Confidence            9999999999999999999999999999999987544

>3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A

Probab=99.90  E-value=3.9e-24  Score=208.31  Aligned_cols=128  Identities=15%  Similarity=0.231  Sum_probs=104.5

Q ss_pred             CCCccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC--------CCCCCCCccCCCC-
Q psy8670          33 EPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--------MADFGYDISDYLS-  103 (224)
Q Consensus        33 ~~~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~--------~~~~gY~~~d~~~-  103 (224)
                      .+..++++.||||-|...-........|++++++++| +||++||||+|||+|+++++        ..++||++.||+. 
T Consensus       656 ~s~~~l~~~VIYEGFt~~~~~~~~~~~gt~~gi~~kl-dyLk~LGVtaIwL~Pi~~~~~~~~~~~~~~~~GYd~~d~~~~  734 (1039)
T 3klk_A          656 RSNAALDSNVIYEGFSNFIYWPTTESERTNVRIAQNA-DLFKSWGITTFELAPQYNSSKDGTFLDSIIDNGYAFTDRYDL  734 (1039)
T ss_dssp             CCSHHHHTCCEEECCCTTBCCCSSGGGCHHHHHHHTH-HHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCS
T ss_pred             cCCcccCCcEEEccccccCCCCCCCCCCCHHHHHHHH-HHHHHcCCCEEEECccccCCcccccccCcCCCCCCccccccc
Confidence            4466788999999442111111122358999999999 99999999999999999985        3679999999984 


Q ss_pred             ---cCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCC--ccchhHHhhhcC-CCCccccccch
Q psy8670         104 ---FEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS--NQHEWFKKSLAN-IPPYKCASLLA  161 (224)
Q Consensus       104 ---v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~--~~~~w~~~~~~~-~~~~~~~f~w~  161 (224)
                         ++|+||+++||++||++||++||+||+|+|+||++  ..++||..++.+ ..++.+++.|.
T Consensus       735 ~~~i~~~~Gt~~efk~lV~alH~~GI~VIlDvV~NHta~~~~~e~~~~~~~~~~~~~~~~~~~~  798 (1039)
T 3klk_A          735 GMSTPNKYGSDEDLRNALQALHKAGLQAIADWVPDQIYNLPGKEAVTVTRSDDHGTTWEVSPIK  798 (1039)
T ss_dssp             SCSSCBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEECCCCEEEEEEEEEECTTCCBCTTCSCS
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccCCcCCCCCCcceEEEEECCCCCcccccccC
Confidence               78999999999999999999999999999999995  788999877754 67788864443

>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A*

Probab=99.89  E-value=1.8e-23  Score=202.44  Aligned_cols=121  Identities=14%  Similarity=0.216  Sum_probs=98.2

Q ss_pred             CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCC--------CCCCCccCCCC----cCCC
Q psy8670          40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA--------DFGYDISDYLS----FEPL  107 (224)
Q Consensus        40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~--------~~gY~~~d~~~----v~~~  107 (224)
                      +.+|||.|...-....+.-..++.+++++| +|||+||||+|||+|+++++..        ++||++.|++.    ++|+
T Consensus       830 s~Vi~QgF~W~~~~~g~~w~~Ty~~I~~kL-dYLk~LGITaIwL~Pi~~s~~~~~~~~~~~d~GYdi~D~y~lGf~i~~~  908 (1108)
T 3ttq_A          830 SNLIYEGFSNFQPKATTHDELTNVVIAKNA-DVFNNWGITSFEMAPQYRSSGDHTFLDSTIDNGYAFTDRYDLGFNTPTK  908 (1108)
T ss_dssp             TCCEEECCCTTCCCCSSGGGSHHHHHHHTH-HHHHHHTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSSSSCCS
T ss_pred             CceEEEeEECCCCCCCCccchhHHHHHHHH-HHHHHcCCCEEEECCCccCCCccccccccccCCcccccccccCcCCCCC
Confidence            478999553322111111123456999999 9999999999999999998654        78999999988    6999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEecCCCCCC--ccchhHHhhhcC-CCCccccccch
Q psy8670         108 FGDLKDFETLKERLHALGIKILLDFVPNHTS--NQHEWFKKSLAN-IPPYKCASLLA  161 (224)
Q Consensus       108 ~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~--~~~~w~~~~~~~-~~~~~~~f~w~  161 (224)
                      ||+++||++||++||++||+||+|+|+||++  ..++||+.++.. ..++.++++|.
T Consensus       909 yGt~edfk~LV~alH~~GI~VIlDvV~NHta~~de~e~f~~~r~~~~~~~~~~~i~~  965 (1108)
T 3ttq_A          909 YGTDGDLRATIQALHHANMQVMADVVDNQVYNLPGKEVVSATRAGVYGNDDATGFGT  965 (1108)
T ss_dssp             SCCHHHHHHHHHHHHHTTCEEEEEECCSEECCCCEEEEEEEEEECTTSCBCCCTTCE
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEeccccccCCCCcceeEEEEeCCCCCcccccccc
Confidence            9999999999999999999999999999996  779999988865 66777755544

>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}

Probab=98.71  E-value=1.2e-09  Score=100.27  Aligned_cols=59  Identities=51%  Similarity=0.956  Sum_probs=53.1

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++++++|++.+|++|++.++..++||+..||++                      |+||||+|+||||.+|+||++...+
T Consensus        39 dYLk~LGvt~I~L~Pi~~~~~~~~GYd~~dy~~vdp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NHts~~~~wf~~~~~~  118 (549)
T 4aie_A           39 DYLEKLGIDAIWLSPVYQSPGVDNGYDISDYEAIDPQYGTMADMDELISKAKEHHIKIVMDLVVNHTSDQHKWFVEAKKG  118 (549)
T ss_dssp             HHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTC
T ss_pred             HHHHHCCCCEEEeCCCcCCCCCCCCcCccCCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECccCCcCCcchhhhhhhc
Confidence            456889999999999999988899999999864                      5899999999999999999999877


Q ss_pred             C
Q psy8670         219 I  219 (224)
Q Consensus       219 ~  219 (224)
                      .
T Consensus       119 ~  119 (549)
T 4aie_A          119 K  119 (549)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1

Probab=98.55  E-value=6.6e-09  Score=96.63  Aligned_cols=58  Identities=47%  Similarity=0.947  Sum_probs=51.6

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++++++|++.+|++|++.++..+++|+..||++                      |+||+|+|+||++..|+||++++.+
T Consensus        52 dyL~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~s~~~~wf~~~~~~  131 (570)
T 1m53_A           52 DYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSD  131 (570)
T ss_dssp             HHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHC
T ss_pred             HHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEeccccccccHHHHHhhcC
Confidence            456789999999999999988889999999863                      6899999999999999999998744

>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*

Probab=98.55  E-value=7e-09  Score=96.20  Aligned_cols=58  Identities=52%  Similarity=0.981  Sum_probs=51.7

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++++++|++.+|++|++.+++.+++|+..||++                      |+||+|+|+||++..|+||++++.+
T Consensus        39 dyl~~LGv~~I~L~Pi~~~~~~~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NHts~~~~wf~~~~~~  118 (557)
T 1zja_A           39 DYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRAS  118 (557)
T ss_dssp             HHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTC
T ss_pred             HHHHHcCCCEEEECCCccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEeccccccchhHHHHhhcC
Confidence            455789999999999999988889999999863                      6899999999999999999998744

>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1

Probab=98.54  E-value=7.2e-09  Score=96.14  Aligned_cols=58  Identities=47%  Similarity=1.004  Sum_probs=51.6

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++++++|++.+|++|++.+++.+++|+..||++                      |+||+|+|+||++..|+||++++.+
T Consensus        38 dyl~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~id~~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH~s~~~~wf~~~~~~  117 (558)
T 1uok_A           38 DYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKS  117 (558)
T ss_dssp             HHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTC
T ss_pred             HHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEecccccccchHHHHHhcC
Confidence            455789999999999999988889999999873                      6899999999999999999998754

>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*

Probab=98.46  E-value=1.2e-08  Score=94.34  Aligned_cols=58  Identities=50%  Similarity=0.983  Sum_probs=51.7

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++++++|++.+|++|++.++..+++|+..||++                      |+||+|+|+||++..|+||++++++
T Consensus        38 dyl~~LGv~~I~l~Pi~~~~~~~~GY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH~s~~~~~f~~~~~~  117 (543)
T 2zic_A           38 DYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHTSDEHAWFIEAREH  117 (543)
T ss_dssp             HHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHC
T ss_pred             HHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEecCcccccchhhHhhhcC
Confidence            455789999999999999987789999999863                      6899999999999999999998755

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=98.45  E-value=1e-08  Score=96.70  Aligned_cols=58  Identities=41%  Similarity=0.752  Sum_probs=51.2

Q ss_pred             chhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhc
Q psy8670         160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLA  217 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~  217 (224)
                      +++++++|++.+|++|+|.++ .+++|+..||++                      |+||||+|+||+|..|+|++++.+
T Consensus       245 LdYLk~LGvt~I~L~Pif~s~-~~~GYd~~dy~~idp~~Gt~~df~~LV~~aH~~GI~VIlD~V~NHts~~h~wf~~~~~  323 (645)
T 4aef_A          245 IDHLVNLGINAIYLTPIFSSL-TYHGYDIVDYFHVARRLGGDRAFVDLLSELKRFDIKVILDGVFHHTSFFHPYFQDVVR  323 (645)
T ss_dssp             HHHHHHHTCCEEEECCCEEES-STTCSSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHH
T ss_pred             hHHHHHcCCCEEEECCCCCCC-CCCCcCccCCCccCcccCCHHHHHHHHHHhhhcCCEEEEEecccccccCCchhhhHhh
Confidence            456688999999999999987 589999998864                      589999999999999999999876


Q ss_pred             C
Q psy8670         218 N  218 (224)
Q Consensus       218 ~  218 (224)
                      .
T Consensus       324 ~  324 (645)
T 4aef_A          324 K  324 (645)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A*

Probab=98.45  E-value=1.8e-08  Score=94.18  Aligned_cols=58  Identities=47%  Similarity=0.983  Sum_probs=51.5

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++++++|++.+|++|++.++..+++|+..||++                      |+||+|+|+||++..|+||++++.+
T Consensus        47 dyl~~LGv~~i~l~Pi~~~~~~~~GY~~~dy~~id~~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH~~~~~~wf~~~~~~  126 (589)
T 3aj7_A           47 EYIKELGADAIWISPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFITDLVINHCSSEHEWFKESRSS  126 (589)
T ss_dssp             HHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTC
T ss_pred             HHHHHcCCCEEEECCcccCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccccchhHHHHHhcC
Confidence            456789999999999999987889999999863                      6899999999999999999998654

>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A*

Probab=98.44  E-value=1.3e-08  Score=95.85  Aligned_cols=62  Identities=39%  Similarity=0.752  Sum_probs=53.8

Q ss_pred             hhcccCCCcceeecccccCCC--CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhh
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM--ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSL  216 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~--~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~  216 (224)
                      ++.+++|++.+|++|++.++.  .+++|+..||++                      |+||+|+|+||++..|+|++++.
T Consensus       120 dyL~~LGv~~I~L~Pi~~~~~~~~~~GY~v~dy~~vdp~~Gt~~d~~~Lv~~ah~~GI~VilD~V~NH~s~~~~wf~~~~  199 (628)
T 1g5a_A          120 PYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCA  199 (628)
T ss_dssp             HHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBCTTTCCHHHHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHH
T ss_pred             HHHHHcCCCEEEeCCCCCCCCCCCCCCcCCcccCCcCccCCCHHHHHHHHHHHHHCCCEEEEEEecCcccccchhHHHHh
Confidence            556789999999999999864  689999999864                      47999999999999999999988


Q ss_pred             cCCCCC
Q psy8670         217 ANIPPY  222 (224)
Q Consensus       217 ~~~~~~  222 (224)
                      ++.++|
T Consensus       200 ~g~~~y  205 (628)
T 1g5a_A          200 AGDPLF  205 (628)
T ss_dssp             TTCGGG
T ss_pred             cCCCcc
Confidence            876655

>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1

Probab=98.41  E-value=3.3e-08  Score=90.04  Aligned_cols=54  Identities=50%  Similarity=1.031  Sum_probs=48.4

Q ss_pred             ccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         164 HDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       164 ~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      +++|++.+|++|++.++. .++|+..||++                      |+||+|+|+||++..|+|+++++++
T Consensus        45 ~~LGv~~I~L~Pi~~~~~-~~GYd~~dy~~idp~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~s~~~~~f~~~~~~  120 (488)
T 1wza_A           45 ADLGVNGIWLMPIFKSPS-YHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRD  120 (488)
T ss_dssp             SSCCCSEEEECCCEECSS-SSCCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTC
T ss_pred             hhcCccEEEECCcccCCC-CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccccCccHhhhhhhcC
Confidence            789999999999999874 59999998863                      5899999999999999999998765

>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*

Probab=98.38  E-value=1.6e-08  Score=90.96  Aligned_cols=56  Identities=41%  Similarity=0.845  Sum_probs=49.5

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhc
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLA  217 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~  217 (224)
                      ++++++|++.+|++|++.++ .+++|+..||++                      |+||+|+|+||++..|+|++++++
T Consensus        30 dyL~~LGv~~I~L~Pi~~~~-~~~GY~~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~~~~~~f~~~~~  107 (441)
T 1lwj_A           30 SYLKELGIDFVWLMPVFSSI-SFHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIKVVLDLPIHHTGFLHTWFQKALK  107 (441)
T ss_dssp             HHHHHTTCCEEEECCCEECS-SSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTBCCTTCHHHHHHHT
T ss_pred             HHHHHcCCCEEEeCCCcCCC-CCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCcccCchHHHHHHhc
Confidence            45589999999999999987 579999998863                      689999999999999999998765

>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP}

Probab=98.38  E-value=3.3e-08  Score=91.58  Aligned_cols=58  Identities=55%  Similarity=1.007  Sum_probs=51.3

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++++++|++.+|++|++.++..+++|+..||++                      |+||+|+|+||++..|+|++++..+
T Consensus        38 dyl~~lGv~~i~l~Pi~~~~~~~~gY~~~dy~~id~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~~~~~f~~~~~~  117 (555)
T 2ze0_A           38 DYLVELGVDIVWICPIYRSPNADNGYDISDYYAIMDEFGTMDDFDELLAQAHRRGLKVILDLVINHTSDEHPWFIESRSS  117 (555)
T ss_dssp             HHHHHHTCCEEEECCCEECCCTTTTCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEEECSBCCTTSHHHHHHHHC
T ss_pred             HHHHHcCCCEEEeCCcccCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEecccccchhhHHHHhhcC
Confidence            455789999999999999987789999998863                      5899999999999999999998744

>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A

Probab=98.37  E-value=1.7e-08  Score=92.02  Aligned_cols=57  Identities=37%  Similarity=0.681  Sum_probs=49.7

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++++++|++.+|++|+|.++. +++|+..||++                      |+||+|+|+||++..|+||++++++
T Consensus        63 dyL~~LGv~~I~L~Pi~~~~~-~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~s~~~~~f~~~~~~  141 (488)
T 2wc7_A           63 DYIQNLGINAIYFTPIFQSAS-NHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLEN  141 (488)
T ss_dssp             HHHHHHTCCEEEESCCEEECT-TCTTSEEEEEEECGGGTHHHHHHHHHHHHHHTTCEEEEEECCSBCCSSSHHHHHHHHH
T ss_pred             HHHHHcCCCEEEECCCCCCCC-CCCCCCcCccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCcCCCcCHHHHHHHhc
Confidence            456789999999999999874 78999988763                      6899999999999999999998753

>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A

Probab=98.34  E-value=1.7e-08  Score=95.19  Aligned_cols=61  Identities=33%  Similarity=0.585  Sum_probs=52.5

Q ss_pred             hhcccCCCcceeecccccCCC--CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhh
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM--ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSL  216 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~--~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~  216 (224)
                      ++++++|++.+|++|++.++.  .+++|+..||++                      |+||+|+|+||++..|+|++++.
T Consensus       113 dyL~~LGv~~I~L~Pi~~~~~~~~~~GY~~~dy~~vdp~~Gt~~df~~Lv~~aH~~GI~VilD~V~NH~s~~~~wf~~~~  192 (644)
T 3czg_A          113 PYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAAR  192 (644)
T ss_dssp             HHHHHHTCCEEEECCCBCBCSSCCTTTTSBSCTTSBCGGGCCHHHHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHH
T ss_pred             HHHHHcCCCEEEeCCCCcCCCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEecCCcccchhhHHHHh
Confidence            556789999999999999864  689999999974                      46999999999999999999887


Q ss_pred             cCCCC
Q psy8670         217 ANIPP  221 (224)
Q Consensus       217 ~~~~~  221 (224)
                      ++..+
T Consensus       193 ~~~~~  197 (644)
T 3czg_A          193 AGDAR  197 (644)
T ss_dssp             TTCHH
T ss_pred             cCCCc
Confidence            76443

>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A*

Probab=98.21  E-value=1.4e-07  Score=89.45  Aligned_cols=61  Identities=46%  Similarity=0.892  Sum_probs=52.3

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++++.+|++.+|++|++.++. .++|+..||++                      |+||+|+|+||++.+|+||+++.++
T Consensus        67 ~yl~~lGv~~i~l~Pi~~~~~-~~gY~~~dy~~i~~~~Gt~~d~~~lv~~~h~~gi~vi~D~V~NH~~~~~~wf~~~~~~  145 (669)
T 3k8k_A           67 DYLNQLGVKALWLSPIHPCMS-YHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKIYLDYVMNHTGTAHPWFTEASSS  145 (669)
T ss_dssp             HHHHTTTCSEEEECCCSSBSS-TTCCSBSCTTSCCTTTCCHHHHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHHC
T ss_pred             HHHHHcCCCEEEecccccCCC-CCCCCcccccccccccCCHHHHHHHHHHHHHcCCEEEEEECcccCCCcCHHHHHHhhC
Confidence            445789999999999999874 58999998863                      5899999999999999999999987


Q ss_pred             -CCCC
Q psy8670         219 -IPPY  222 (224)
Q Consensus       219 -~~~~  222 (224)
                       ..+|
T Consensus       146 ~~~~y  150 (669)
T 3k8k_A          146 SESPY  150 (669)
T ss_dssp             TTSTT
T ss_pred             CCCCc
Confidence             4454

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=98.20  E-value=2.2e-07  Score=86.67  Aligned_cols=58  Identities=41%  Similarity=0.720  Sum_probs=50.5

Q ss_pred             chhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhc
Q psy8670         160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLA  217 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~  217 (224)
                      +++.+++|++.+|++|++.++ ..++|+..||+.                      |+||||+|+||++..|+||+++++
T Consensus       178 LdyLk~LGvt~I~L~Pi~~~~-~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~f~~~~~  256 (583)
T 1ea9_C          178 LDHLSKLGVNAVYFTPLFKAT-TNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLK  256 (583)
T ss_dssp             HHHHHHHTCSEEEECCCSSCS-SSSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTHHHHHHHT
T ss_pred             hHHHHHcCCCEEEECCCccCC-CCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEccccCCCccHHHHHHHh
Confidence            345678999999999999987 468999988863                      689999999999999999999887


Q ss_pred             C
Q psy8670         218 N  218 (224)
Q Consensus       218 ~  218 (224)
                      +
T Consensus       257 ~  257 (583)
T 1ea9_C          257 N  257 (583)
T ss_dssp             T
T ss_pred             c
Confidence            5

>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}

Probab=98.19  E-value=7.3e-08  Score=87.35  Aligned_cols=57  Identities=37%  Similarity=0.645  Sum_probs=49.5

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++++++|++.+|++|++.++ .+++|+..||++                      |+||+|+|+||++..|+|+++++++
T Consensus        57 dyL~~LGv~~I~l~Pi~~~~-~~~gY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH~~~~~~~f~~~~~~  135 (475)
T 2z1k_A           57 PYLLDLGVEAIYLNPVFAST-ANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLMEN  135 (475)
T ss_dssp             HHHHHHTCCEEEECCCEEES-STTCCSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHH
T ss_pred             HHHHHcCCCEEEECCCcCCC-CCCCcCCCCcCccCcccCCHHHHHHHHHHHHHCCCEEEEEEecccccCCCHHHHHHHhc
Confidence            45678999999999999987 478999888753                      6899999999999999999988764

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=98.17  E-value=8.9e-08  Score=91.07  Aligned_cols=58  Identities=41%  Similarity=0.685  Sum_probs=50.4

Q ss_pred             chhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhc
Q psy8670         160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLA  217 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~  217 (224)
                      +++++++|++.+|++|+|.++. .++|+..||++                      |+||+|+|+||++..|+||+++.+
T Consensus       271 LdyLk~LGvt~IwL~Pi~~s~~-~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~GikVilD~V~NHts~~~~~f~~~~~  349 (696)
T 4aee_A          271 IDHLEDLGVETIYLTPIFSSTS-YHRYDTIDYKSIDKYLGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNELFVKALR  349 (696)
T ss_dssp             HHHHHHHTCCEEEECCCEEESS-SSCCSEEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECSSEECTTSHHHHHHHH
T ss_pred             hHHHHHcCCCEEEECCcccCCC-CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEeccccccCccCHHHHHHHh
Confidence            4556789999999999999874 69999998863                      689999999999999999999865


Q ss_pred             C
Q psy8670         218 N  218 (224)
Q Consensus       218 ~  218 (224)
                      +
T Consensus       350 ~  350 (696)
T 4aee_A          350 E  350 (696)
T ss_dssp             H
T ss_pred             c
Confidence            4

>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A*

Probab=98.14  E-value=1.6e-07  Score=86.03  Aligned_cols=55  Identities=33%  Similarity=0.454  Sum_probs=49.1

Q ss_pred             hcccCCCcceeecccc-cCCCCCCCCcchhhHH-----------------HHHHHhhcccCCCCCcHHHHHhhc
Q psy8670         162 RLHDLGVGAVWISPIF-KSPMADFGYDISDYLR-----------------IKILLDFVPNHTSNQHEWFKKSLA  217 (224)
Q Consensus       162 ~~~~lG~~~~w~~p~f-~~~~~dlny~n~d~~~-----------------i~ii~d~v~nh~~~~~~W~~~~~~  217 (224)
                      +++++ ++.+|++|++ .++..+++|+..||++                 |+||+|+|+||++..|+|++++++
T Consensus        29 yL~~L-v~~IwL~Pi~~~~~~~~~GY~~~dy~~idp~~Gt~~df~~Lv~Gi~VilD~V~NH~s~~~~~f~~~~~  101 (504)
T 1r7a_A           29 RFDGV-YDGVHILPFFTPFDGADAGFDPIDHTKVDERLGSWDDVAELSKTHNIMVDAIVNHMSWESKQFQDVLA  101 (504)
T ss_dssp             HSTTT-CCEEEECCCEECSSSSSTTSSCSEEEEECTTTCCHHHHHHHHTTSEEEEEEECSEEETTSHHHHHHHH
T ss_pred             HHHHH-hCeEEECCcccCCCCCCCCCCccChhhcCcccCCHHHHHHHHhCCEEEEEECCCcCCCcchHHHHHhh
Confidence            55889 9999999999 7776799999999873                 689999999999999999998775

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=98.10  E-value=2.2e-07  Score=86.69  Aligned_cols=58  Identities=47%  Similarity=0.761  Sum_probs=50.2

Q ss_pred             chhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhc
Q psy8670         160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLA  217 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~  217 (224)
                      +++.+++|++.+|++|++.++ ..++|+..||+.                      |+||||+|+||++..|+||+++++
T Consensus       179 LdyLk~LGvt~I~L~Pi~~~~-~~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~~~~~~~f~~~~~  257 (585)
T 1wzl_A          179 LPYLEELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQ  257 (585)
T ss_dssp             HHHHHHHTCCEEEECCCEECS-SSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHH
T ss_pred             hHHHHHcCCCEEEECCcccCC-CCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcCCcCCCccHHHHHHHh
Confidence            345678999999999999987 468999998863                      689999999999999999999876


Q ss_pred             C
Q psy8670         218 N  218 (224)
Q Consensus       218 ~  218 (224)
                      +
T Consensus       258 ~  258 (585)
T 1wzl_A          258 K  258 (585)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A*

Probab=98.09  E-value=7.6e-08  Score=90.99  Aligned_cols=62  Identities=35%  Similarity=0.662  Sum_probs=52.4

Q ss_pred             hhcccCCCcceeecccccCC--CCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhh
Q psy8670         161 ARLHDLGVGAVWISPIFKSP--MADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSL  216 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~--~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~  216 (224)
                      ++.+++|++.+|++|++.++  ..+.+|+..||+.                      |+||+|+|+||++.+|+|++++.
T Consensus       118 dyL~~lGv~~v~l~P~~~~~~~~~~~GY~~~dy~~i~~~~Gt~~d~~~lv~~~h~~Gi~Vi~D~V~NH~s~~~~wf~~~~  197 (655)
T 3ucq_A          118 DYLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVRPDLGTMDDLSALARALRGRGISLVLDLVLNHVAREHAWAQKAR  197 (655)
T ss_dssp             HHHHHTTCCEEEECCCEEECSSCCGGGTSEEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHH
T ss_pred             HHHHHcCCCEEEECCCcCCCCCCCCCCcCCcCcCccCccCCCHHHHHHHHHHHHHCCCEEEEEeeccccccchHHHHHhh
Confidence            44577999999999999875  4689999998873                      47999999999999999999988


Q ss_pred             cCCCCC
Q psy8670         217 ANIPPY  222 (224)
Q Consensus       217 ~~~~~~  222 (224)
                      ++..+|
T Consensus       198 ~~~~~~  203 (655)
T 3ucq_A          198 AGDPKY  203 (655)
T ss_dssp             TTCHHH
T ss_pred             cCCCCC
Confidence            775443

>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A

Probab=98.04  E-value=2.8e-07  Score=86.19  Aligned_cols=56  Identities=29%  Similarity=0.611  Sum_probs=47.7

Q ss_pred             chhcccCCCcceeecccccCCCCC---CCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHH
Q psy8670         160 LARLHDLGVGAVWISPIFKSPMAD---FGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKK  214 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~~d---lny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~  214 (224)
                      +++++++|++.+|++|++.+++++   ++|+..||++                      |+||+|+|+||++..|+|+++
T Consensus       154 Ldyl~~LGv~aI~l~Pi~~~~~~~~~~~GY~~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~  233 (601)
T 3edf_A          154 LDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKD  233 (601)
T ss_dssp             HHHHHHTTCCEEEESCCEECCCSSSGGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSGGGGS
T ss_pred             HHHHHHcCCCEEEECccccCCCCCCCCCCcCccccccccccCCCHHHHHHHHHHHHHcCCEEEEEECCcccCCcchhhhh
Confidence            345578999999999999987544   8999998863                      589999999999999999975


Q ss_pred             h
Q psy8670         215 S  215 (224)
Q Consensus       215 ~  215 (224)
                      .
T Consensus       234 ~  234 (601)
T 3edf_A          234 L  234 (601)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=98.00  E-value=4.4e-07  Score=84.63  Aligned_cols=58  Identities=38%  Similarity=0.724  Sum_probs=49.8

Q ss_pred             chhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhc
Q psy8670         160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLA  217 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~  217 (224)
                      +++++++|++.+|++|++.++. .++|+..||+.                      |+||||+|+||++..|+|++++++
T Consensus       182 LdyLk~LGvt~I~L~Pi~~~~~-~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~f~~~~~  260 (588)
T 1j0h_A          182 LDYLVDLGITGIYLTPIFRSPS-NHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWK  260 (588)
T ss_dssp             HHHHHHHTCCEEEECCCEECSS-SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHHHHH
T ss_pred             HHHHHHcCCCEEEECCcccCCC-CCCcCccccCccCccCCCHHHHHHHHHHHHHCCCEEEEEECcCcCcccchhHHHHHh
Confidence            3556789999999999999874 68999888763                      689999999999999999998875


Q ss_pred             C
Q psy8670         218 N  218 (224)
Q Consensus       218 ~  218 (224)
                      +
T Consensus       261 ~  261 (588)
T 1j0h_A          261 N  261 (588)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1

Probab=97.88  E-value=4.4e-07  Score=86.16  Aligned_cols=57  Identities=33%  Similarity=0.598  Sum_probs=49.3

Q ss_pred             hhcccCCCcceeecccccC-CCCCCCCcchhhHH----------------------HHHHHhhcccCCC--CCcHHHHHh
Q psy8670         161 ARLHDLGVGAVWISPIFKS-PMADFGYDISDYLR----------------------IKILLDFVPNHTS--NQHEWFKKS  215 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~-~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~--~~~~W~~~~  215 (224)
                      ++++++|++.+|++|++.+ +..+++|+..||++                      |+||+|+|+||++  ..|+|++++
T Consensus        24 dYLk~LGVtaIwLsPi~~~~~gs~hGYdv~Dy~~Idp~lGt~edfk~LV~aaH~~GIkVIlDvV~NHta~~~~~~wf~d~  103 (720)
T 1iv8_A           24 WYFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVNSLNWRLMDV  103 (720)
T ss_dssp             HHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEECTTTTHHHHHHHHHHHHHHTTCEEEEEECCSEEECCTTCHHHHHH
T ss_pred             HHHHhCCCCEEEECCcccCCCCCCCCCCCccCCCcCccCCCHHHHHHHHHHHHHCCCEEEEEeccccccCccccHHHHHh
Confidence            4558899999999999986 56789999998853                      6899999999999  999999887


Q ss_pred             hc
Q psy8670         216 LA  217 (224)
Q Consensus       216 ~~  217 (224)
                      .+
T Consensus       104 l~  105 (720)
T 1iv8_A          104 LX  105 (720)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A

Probab=97.82  E-value=8.5e-07  Score=79.57  Aligned_cols=49  Identities=31%  Similarity=0.609  Sum_probs=41.4

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHH
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWF  212 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~  212 (224)
                      ++.+++|++.+|++|++.+++.  +|+..||++                      |+||+|+|+||++ +|+||
T Consensus        43 dyl~~LGv~~i~l~Pi~~~~~~--~y~~~dy~~idp~~Gt~~d~~~lv~~ah~~Gi~vilD~V~NH~s-~~~wF  113 (424)
T 2dh2_A           43 DYLSSLKVKGLVLGPIHKNQKD--DVAQTDLLQIDPNFGSKEDFDSLLQSAKKKSIRVILDLTPNYRG-ENSWF  113 (424)
T ss_dssp             HHHHHTTCSEEEECCCEEECTT--CSTTEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEECCTTTTS-SSTTC
T ss_pred             HHHHHcCCCEEEECCCCCCCCC--CCCcccccccCccCCCHHHHHHHHHHHHHCCCEEEEEECCCcCC-Ccccc
Confidence            4557899999999999998754  478777753                      6899999999999 89997

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=97.68  E-value=2.7e-06  Score=80.05  Aligned_cols=57  Identities=39%  Similarity=0.751  Sum_probs=49.4

Q ss_pred             chhccc-CCCcceeecccccCCCCCCCCcchhhH----------------------H--H--HHHHhhcccCCCCCcHHH
Q psy8670         160 LARLHD-LGVGAVWISPIFKSPMADFGYDISDYL----------------------R--I--KILLDFVPNHTSNQHEWF  212 (224)
Q Consensus       160 w~~~~~-lG~~~~w~~p~f~~~~~dlny~n~d~~----------------------~--i--~ii~d~v~nh~~~~~~W~  212 (224)
                      ++++++ +|++.+|++|++.++. .++|+..||+                      .  |  +||||+|+||++..|+||
T Consensus       197 LdyLk~~LGvt~I~L~Pi~~~~~-~~GYd~~dy~~id~~~Gt~~dfk~LV~~~H~~G~~I~~~VIlD~V~NH~~~~~~~f  275 (637)
T 1ji1_A          197 LGYIKKTLGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHPWF  275 (637)
T ss_dssp             HHHHHTTTCCCEEEESCCEECSS-SSCCSCSEEEEECTTTCCHHHHHHHHHHHHCSSSSSCCEEEEEECCSBCCTTSTTT
T ss_pred             HHHHHhccCCCEEEECCCccCCC-CCCcCccchhhhccccCCHHHHHHHHHHHHhCCCCccceEEEEECcccCCCCcHHH
Confidence            456789 9999999999999874 6899988885                      4  7  999999999999999999


Q ss_pred             HHhhc
Q psy8670         213 KKSLA  217 (224)
Q Consensus       213 ~~~~~  217 (224)
                      ++...
T Consensus       276 ~~~~~  280 (637)
T 1ji1_A          276 DKYNN  280 (637)
T ss_dssp             CTTCC
T ss_pred             hhhhc
Confidence            87654

>3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str}

Probab=97.55  E-value=2.9e-06  Score=79.91  Aligned_cols=58  Identities=33%  Similarity=0.619  Sum_probs=48.8

Q ss_pred             hhcccCCCcceeecccccC-CCCCCCCcchhhHH----------------------HHHHHhhcccCCCC--CcHHHHHh
Q psy8670         161 ARLHDLGVGAVWISPIFKS-PMADFGYDISDYLR----------------------IKILLDFVPNHTSN--QHEWFKKS  215 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~-~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~--~~~W~~~~  215 (224)
                      ++.+++|++.+|.+|++.+ +..+++|+..||++                      |+||+|+|+||++.  .|+|+++.
T Consensus        22 dyL~~LGvt~V~LsPi~e~~~~s~~GYd~~Dy~~vdp~lGt~edfk~LV~~aH~~GI~VilDvV~NH~s~~~~~~wf~d~  101 (704)
T 3hje_A           22 DYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTINDELGGEEEYIRLIDEAKSKGLGIIQDIVPNHMAVHHTNWRLMDV  101 (704)
T ss_dssp             HHHHHHTCSEEEECCCEEESTTCSSSCSEEEEEEECGGGTHHHHHHHHHHHHHHHTCEEEEEECCSEEECSTTCHHHHHH
T ss_pred             HHHHHCCCCEEEECCCccCCCCCCCCCCCcCCCCcCccCCCHHHHHHHHHHHHHCCCEEEEeecccccccccchHHHHHH
Confidence            3457899999999999986 45788999888852                      57999999999886  99999998


Q ss_pred             hcC
Q psy8670         216 LAN  218 (224)
Q Consensus       216 ~~~  218 (224)
                      .++
T Consensus       102 l~~  104 (704)
T 3hje_A          102 LKK  104 (704)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            764

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=97.38  E-value=5.4e-06  Score=80.15  Aligned_cols=23  Identities=22%  Similarity=0.324  Sum_probs=21.0

Q ss_pred             HHHHHhhcccCCCCCcHHHHHhh
Q psy8670         194 IKILLDFVPNHTSNQHEWFKKSL  216 (224)
Q Consensus       194 i~ii~d~v~nh~~~~~~W~~~~~  216 (224)
                      |+||||+|+|||+.+|+|+++..
T Consensus       393 IkVIlDvV~NHts~~h~wf~~~~  415 (884)
T 4aio_A          393 LRVVMDVVYNHLDSSGPCGISSV  415 (884)
T ss_dssp             CEEEEEECCSBCSCCSSSSTTCC
T ss_pred             CceeeeeccccccCCCcchhhcc
Confidence            68999999999999999998764

>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*

Probab=97.36  E-value=3.4e-06  Score=76.67  Aligned_cols=56  Identities=32%  Similarity=0.561  Sum_probs=45.1

Q ss_pred             hhcccCCCcceeecccccCCC-CCCCCcchhhHH-------------------------------HHHHHhhcccCCC--
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYLR-------------------------------IKILLDFVPNHTS--  206 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~~-------------------------------i~ii~d~v~nh~~--  206 (224)
                      ++++++|++.+|++|++.... .+++|+..||+.                               |+||+|+|+||++  
T Consensus        32 dyL~~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~~~~~~q~~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~~~~  111 (485)
T 1wpc_A           32 SNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGA  111 (485)
T ss_dssp             HHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECSC
T ss_pred             HHHHHcCCCEEEeCCcccCCCCCCCCCCeecccccccccccCccCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccccCCC
Confidence            445889999999999998432 578888877761                               5899999999994  


Q ss_pred             CCcHHHHHhh
Q psy8670         207 NQHEWFKKSL  216 (224)
Q Consensus       207 ~~~~W~~~~~  216 (224)
                      +.|+|++.+.
T Consensus       112 ~~~~~f~~~~  121 (485)
T 1wpc_A          112 DATEMVRAVE  121 (485)
T ss_dssp             SEEEEEEEEE
T ss_pred             CcCcceeEEe
Confidence            6899997654

>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A

Probab=97.32  E-value=3.5e-06  Score=76.47  Aligned_cols=57  Identities=35%  Similarity=0.552  Sum_probs=45.3

Q ss_pred             hhcccCCCcceeecccccCCC-CCCCCcchhhH---------H----------------------HHHHHhhcccCCC--
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYL---------R----------------------IKILLDFVPNHTS--  206 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~---------~----------------------i~ii~d~v~nh~~--  206 (224)
                      ++++++|++.+|++|++.... .+++|+..||+         +                      |+||+|+|+||++  
T Consensus        30 dyL~~LGvt~I~l~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~~~  109 (480)
T 1ud2_A           30 AALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGA  109 (480)
T ss_dssp             HHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCC
T ss_pred             HHHHHcCCCEEEeCCcccCCCCCCCCcCccchhhcccccccCccCCCCCCHHHHHHHHHHHHHCCCEEEEEEccCccccc
Confidence            345789999999999998432 57888887776         1                      5899999999994  


Q ss_pred             CCcHHHHHhhc
Q psy8670         207 NQHEWFKKSLA  217 (224)
Q Consensus       207 ~~~~W~~~~~~  217 (224)
                      +.|+|++.+..
T Consensus       110 ~~~~~f~~~~~  120 (480)
T 1ud2_A          110 DFTEAVQAVQV  120 (480)
T ss_dssp             SEEEEEEEEEE
T ss_pred             cccccceeeec
Confidence            68999976543

>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A

Probab=97.32  E-value=1e-05  Score=72.31  Aligned_cols=60  Identities=30%  Similarity=0.421  Sum_probs=44.8

Q ss_pred             hhcccCCCcceeecccccCCCC----------CCCCcchhhHH----------------------HHHHHhhcccCCCCC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMA----------DFGYDISDYLR----------------------IKILLDFVPNHTSNQ  208 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~----------dlny~n~d~~~----------------------i~ii~d~v~nh~~~~  208 (224)
                      ++.+++|++.+|++|++.....          .++|+..||+.                      |+||+|+|+||++..
T Consensus        24 ~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~~~~~gY~~~~y~~~~~~~G~~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~  103 (422)
T 1ua7_A           24 KDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFD  103 (422)
T ss_dssp             HHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEETTTEEHHHHHHHHHHHHTTTCEEEEEECCSBCCSC
T ss_pred             HHHHHcCCCEEEeCCccccccCCcCcCccCCccccccceeeeccCCCCCCHHHHHHHHHHHHHCCCEEEEEeccCcccCC
Confidence            3457899999999998764211          24677666642                      689999999999999


Q ss_pred             cHHHHHhhcCCC
Q psy8670         209 HEWFKKSLANIP  220 (224)
Q Consensus       209 ~~W~~~~~~~~~  220 (224)
                      |+|+++..++.+
T Consensus       104 ~~~~~~~~~~~~  115 (422)
T 1ua7_A          104 YAAISNEVKSIP  115 (422)
T ss_dssp             TTTSCHHHHTST
T ss_pred             ccccCccccCCc
Confidence            999877655543

>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A*

Probab=97.30  E-value=6.4e-06  Score=80.63  Aligned_cols=58  Identities=21%  Similarity=0.362  Sum_probs=46.8

Q ss_pred             hhcccCCCcceeecccccCCCC--------CCCCcchhh-----------------HH---------HHHHHhhcccCC-
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMA--------DFGYDISDY-----------------LR---------IKILLDFVPNHT-  205 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~--------dlny~n~d~-----------------~~---------i~ii~d~v~nh~-  205 (224)
                      ++++++|++.+|++|++.++..        +.||+..|+                 .+         |+||||+|+||+ 
T Consensus       860 dYLk~LGITaIwL~Pi~~s~~~~~~~~~~~d~GYdi~D~y~lGf~i~~~yGt~edfk~LV~alH~~GI~VIlDvV~NHta  939 (1108)
T 3ttq_A          860 DVFNNWGITSFEMAPQYRSSGDHTFLDSTIDNGYAFTDRYDLGFNTPTKYGTDGDLRATIQALHHANMQVMADVVDNQVY  939 (1108)
T ss_dssp             HHHHHHTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSSSSCCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred             HHHHHcCCCEEEECCCccCCCccccccccccCCcccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence            4457899999999999987644        778876543                 21         589999999998 


Q ss_pred             -CCCcHHHHHhhcC
Q psy8670         206 -SNQHEWFKKSLAN  218 (224)
Q Consensus       206 -~~~~~W~~~~~~~  218 (224)
                       +++|+||+.++.+
T Consensus       940 ~~de~e~f~~~r~~  953 (1108)
T 3ttq_A          940 NLPGKEVVSATRAG  953 (1108)
T ss_dssp             CCCEEEEEEEEEEC
T ss_pred             CCCCcceeEEEEeC
Confidence             4889999988877

>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}

Probab=97.30  E-value=2.2e-05  Score=70.48  Aligned_cols=55  Identities=35%  Similarity=0.562  Sum_probs=44.8

Q ss_pred             hhcccCCCcceeecccccCCCCC------CCCcchhhHH----------------------HHHHHhhcccCCCCCcHHH
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMAD------FGYDISDYLR----------------------IKILLDFVPNHTSNQHEWF  212 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~d------lny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~  212 (224)
                      ++++++|++.+|++|++.++..+      .+|+..||++                      |+||+|+|+||++..++|+
T Consensus        37 ~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~gY~~~dy~~i~~~~Gt~~~~~~lv~~~h~~Gi~vi~D~V~NH~~~~~~~~  116 (449)
T 3dhu_A           37 QRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHELGMKVMLDIVYNHTSPDSVLA  116 (449)
T ss_dssp             HHHHHHTCSEEEECCCSCBCSTTCCTTTCCTTSBSCTTSCCGGGCCHHHHHHHHHHHHHTTCEEEEEECCSEECTTSHHH
T ss_pred             HHHHHcCCCEEEECCcccccccCCCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEccCcCcCccchh
Confidence            45678999999999999765322      4688888853                      5899999999999999988


Q ss_pred             HHh
Q psy8670         213 KKS  215 (224)
Q Consensus       213 ~~~  215 (224)
                      ++.
T Consensus       117 ~~~  119 (449)
T 3dhu_A          117 TEH  119 (449)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            764

>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A

Probab=97.19  E-value=6.6e-06  Score=76.96  Aligned_cols=56  Identities=32%  Similarity=0.484  Sum_probs=44.9

Q ss_pred             hhcccCCCcceeecccccCC--CCCCCCcchhhHH-------------------------------HHHHHhhcccCC--
Q psy8670         161 ARLHDLGVGAVWISPIFKSP--MADFGYDISDYLR-------------------------------IKILLDFVPNHT--  205 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~--~~dlny~n~d~~~-------------------------------i~ii~d~v~nh~--  205 (224)
                      ++++++|++.+|++|++.+.  +.+++|+..||+.                               |+||+|+|+||+  
T Consensus       157 dyLk~LGvtaIwL~Pi~~~~s~~~~~GYd~~dy~~l~e~~q~g~idp~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NH~~~  236 (599)
T 3bc9_A          157 PELAEAGFTAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMG  236 (599)
T ss_dssp             HHHHHHTCCEEECCCCSEETTGGGCCSCSEEETTCSSCSCBTTBSSBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEECS
T ss_pred             HHHHHcCCCEEEECCcccCCCCCCCCCCChhhcccccccccccccCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCCC
Confidence            34578999999999999854  3468888777751                               589999999998  


Q ss_pred             CCCcHHHHHhh
Q psy8670         206 SNQHEWFKKSL  216 (224)
Q Consensus       206 ~~~~~W~~~~~  216 (224)
                      ++.|+|+++..
T Consensus       237 ~~~~~wf~~~~  247 (599)
T 3bc9_A          237 ADYAETVLLDE  247 (599)
T ss_dssp             CSEEEEEEBCT
T ss_pred             CcCCccccccc
Confidence            46799997665

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=97.17  E-value=2.7e-05  Score=74.31  Aligned_cols=57  Identities=28%  Similarity=0.532  Sum_probs=44.3

Q ss_pred             chhcccCCCcceeecccccCCCC---------CCCCcchhhH---------------------H---------HHHHHhh
Q psy8670         160 LARLHDLGVGAVWISPIFKSPMA---------DFGYDISDYL---------------------R---------IKILLDF  200 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~~---------dlny~n~d~~---------------------~---------i~ii~d~  200 (224)
                      +++++++|++.+|++|++..+..         ..+|+..||+                     +         |+||||+
T Consensus       257 LdyLk~LGvtaI~L~Pi~~~~~~de~~~~~~~~wGYd~~dy~a~~~~yg~~p~~g~~~~~dfk~LV~~aH~~GI~VIlDv  336 (718)
T 2e8y_A          257 LAYVKELGVTHVELLPVNDFAGVDEEKPLDAYNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTLHQHGLRVILDV  336 (718)
T ss_dssp             HHHHHHHTCSEEEESCCEEESSSCTTSGGGCCCCCCSEEEEEEECSTTSSCSSSHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             hHHHHHcCCCEEEECCccccCccccccccccCcCCCCccCCCCcCcccccCCCCccccHHHHHHHHHHHHHCCCEEEEEE
Confidence            46678899999999999975432         3667655542                     1         5899999


Q ss_pred             cccCCCCCc-HHHHHhh
Q psy8670         201 VPNHTSNQH-EWFKKSL  216 (224)
Q Consensus       201 v~nh~~~~~-~W~~~~~  216 (224)
                      |+||++..| .||++..
T Consensus       337 V~NHt~~~~~~~f~~~~  353 (718)
T 2e8y_A          337 VFNHVYKRENSPFEKTV  353 (718)
T ss_dssp             CTTCCSSGGGSHHHHHS
T ss_pred             ecccccCcccccccccC
Confidence            999999999 6998864

>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1

Probab=97.16  E-value=2.7e-05  Score=70.59  Aligned_cols=50  Identities=28%  Similarity=0.518  Sum_probs=41.1

Q ss_pred             hhcccCCCcceeecccccCCC-------CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcH
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM-------ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHE  210 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~-------~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~  210 (224)
                      ++++++|++.+|++|++.+..       ..++|+..||++                      |+||+|+|+||++..++
T Consensus        50 dyL~~LGv~~I~l~Pi~~~~~~~~~~~~~~~GY~~~dy~~id~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~  128 (484)
T 2aaa_A           50 DYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGN  128 (484)
T ss_dssp             HHHHTTTCCEEEECCCEEECCCCBTTBCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCBSSC
T ss_pred             HHHHhcCCCEEEeCccccCcccccccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECcCCcCCCCC
Confidence            456889999999999998643       347899888863                      68999999999998654

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=97.15  E-value=2.9e-05  Score=72.60  Aligned_cols=56  Identities=27%  Similarity=0.465  Sum_probs=45.9

Q ss_pred             chhcccCCCcceeecccccCCCCC-CCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHh
Q psy8670         160 LARLHDLGVGAVWISPIFKSPMAD-FGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKS  215 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~~d-lny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~  215 (224)
                      +++++++|++.+|++|++..+..+ .+|+..||+.                      |+||||+|+||++.++.|+.+.
T Consensus       150 L~yl~~lGv~~I~L~Pi~~~~~~~~wGY~~~~y~~~~~~~Gt~~d~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~  228 (602)
T 2bhu_A          150 LPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYLSSY  228 (602)
T ss_dssp             HHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCHHHH
T ss_pred             HHHHHHcCCCEEEECChhhccCCCCCCcccccCcccCcCCCCHHHHHHHHHHHHHCCCEEEEEecccccccCCcccccc
Confidence            355678999999999999876444 4899888753                      6899999999999999988764

>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*

Probab=97.15  E-value=3.5e-05  Score=68.43  Aligned_cols=49  Identities=24%  Similarity=0.417  Sum_probs=40.8

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH-----------------------HHHHHhhcccCCCCCcH
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR-----------------------IKILLDFVPNHTSNQHE  210 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~-----------------------i~ii~d~v~nh~~~~~~  210 (224)
                      ++++++|++.+|++|++.++ .+++|+..|+++                       |+||+|+|+||++..|+
T Consensus        28 dyl~~lGv~~i~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~~   99 (405)
T 1ht6_A           28 DDIAAAGVTHVWLPPPSHSV-SNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYK   99 (405)
T ss_dssp             HHHHHTTCCEEEECCCSCBS-STTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCSEE
T ss_pred             HHHHHcCCCEEEeCCCccCC-CCCCCCccccccCCCccCCCHHHHHHHHHHHHHCCCEEEEEECcCcccCCCC
Confidence            44578999999999999987 568888766542                       57999999999999987

>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A

Probab=97.13  E-value=2.6e-05  Score=70.64  Aligned_cols=50  Identities=26%  Similarity=0.494  Sum_probs=41.3

Q ss_pred             hhcccCCCcceeecccccCCC-------CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcH
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM-------ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHE  210 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~-------~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~  210 (224)
                      ++++++|++.+|++|++.+..       ..++|+..|+++                      |+||+|+|+||++..++
T Consensus        50 dyL~~lGvt~I~l~Pi~~~~~~~~~~~~~~~GY~~~d~~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~  128 (478)
T 2guy_A           50 DYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGA  128 (478)
T ss_dssp             HHHHTTTCCEEEECCCEEECCCCBTTBCCTTSCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBC
T ss_pred             HHHHhcCCCEEEeCCcccCCccccCCCCCCCCCCcccccccCccCCCHHHHHHHHHHHHHCCCEEEEEECcccCCCCCC
Confidence            456889999999999998642       457899888863                      68999999999998765

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=97.12  E-value=1e-05  Score=76.63  Aligned_cols=52  Identities=38%  Similarity=0.682  Sum_probs=42.1

Q ss_pred             hcccCCCcceeecccccC---C-------CCCCCCcchhhHH----------------------HHHHHhhcccCCCCCc
Q psy8670         162 RLHDLGVGAVWISPIFKS---P-------MADFGYDISDYLR----------------------IKILLDFVPNHTSNQH  209 (224)
Q Consensus       162 ~~~~lG~~~~w~~p~f~~---~-------~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~  209 (224)
                      +++++|++.+|++|++.+   +       ..+++|+..||++                      |+||+|+|+||++..|
T Consensus        62 yLk~LGv~aIwL~Pi~~~~~~~~~~~~g~~~~~GY~~~Dy~~idp~~Gt~~df~~Lv~~aH~~GIkVilD~V~NHts~~~  141 (680)
T 1cyg_A           62 YLTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPAS  141 (680)
T ss_dssp             TTTTTTCCEEEECCCEEECCCCCSSSSCCCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECC
T ss_pred             HHHhCCCCEEEeCccccCccccccccCCCCCCCCcCchhccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCccc
Confidence            558999999999999875   1       2458999888764                      6899999999999887


Q ss_pred             ---HHHH
Q psy8670         210 ---EWFK  213 (224)
Q Consensus       210 ---~W~~  213 (224)
                         +|+.
T Consensus       142 ~~~~~~~  148 (680)
T 1cyg_A          142 ETNPSYM  148 (680)
T ss_dssp             SSCTTST
T ss_pred             ccCcchh
Confidence               5553

>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1

Probab=97.10  E-value=1.9e-05  Score=72.44  Aligned_cols=55  Identities=29%  Similarity=0.697  Sum_probs=44.2

Q ss_pred             hhcccCCCcceeecccccCCC-CCCCCcchhhH-------------------------------HHHHHHhhcccCCC--
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYL-------------------------------RIKILLDFVPNHTS--  206 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~-------------------------------~i~ii~d~v~nh~~--  206 (224)
                      ++++++|++.+|++|++.... .+++|+..||+                               .|+||+|+|+||++  
T Consensus        31 dyLk~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~l~~f~~~~~idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~  110 (515)
T 1hvx_A           31 NNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGA  110 (515)
T ss_dssp             HHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCC
T ss_pred             HHHHhcCCCEEEeCCcccCCCCCCCCcCeecccccccccccCccCCCCCCHHHHHHHHHHHHHCCCEEEEEEecCCccCC
Confidence            455889999999999998532 57888887776                               15899999999995  


Q ss_pred             CCcHHHHHh
Q psy8670         207 NQHEWFKKS  215 (224)
Q Consensus       207 ~~~~W~~~~  215 (224)
                      +.|+|++..
T Consensus       111 d~~~~f~~~  119 (515)
T 1hvx_A          111 DGTEWVDAV  119 (515)
T ss_dssp             SEEEEEEEE
T ss_pred             CcccceeEE
Confidence            689998654

>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A

Probab=97.08  E-value=1.5e-05  Score=72.25  Aligned_cols=56  Identities=32%  Similarity=0.538  Sum_probs=44.8

Q ss_pred             hhcccCCCcceeecccccCCC-CCCCCcchhhH---------H----------------------HHHHHhhcccCCC--
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYL---------R----------------------IKILLDFVPNHTS--  206 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~---------~----------------------i~ii~d~v~nh~~--  206 (224)
                      ++++++|++.+|++|++.... .+++|+..||+         +                      |+||+|+|+||++  
T Consensus        28 dyL~~LGvt~I~L~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~id~~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~~~  107 (483)
T 3bh4_A           28 EHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGA  107 (483)
T ss_dssp             HHHHHHTCCEEEECCCSEESSTTSCSSSEEETTCSSCSCCSSCSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCC
T ss_pred             HHHHhcCCCEEEcCccccCCCCCCCCcccccccccccccccCccCCCCCCHHHHHHHHHHHHHCCCEEEEEEccCcccCc
Confidence            445889999999999998532 57888888776         1                      5899999999995  


Q ss_pred             CCcHHHHHhh
Q psy8670         207 NQHEWFKKSL  216 (224)
Q Consensus       207 ~~~~W~~~~~  216 (224)
                      +.|+|++...
T Consensus       108 d~~~~f~~~~  117 (483)
T 3bh4_A          108 DATEDVTAVE  117 (483)
T ss_dssp             SEEEEEEEEE
T ss_pred             ccccceeeee
Confidence            6899987643

>3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A

Probab=97.07  E-value=1.9e-05  Score=77.53  Aligned_cols=58  Identities=19%  Similarity=0.406  Sum_probs=47.6

Q ss_pred             hhcccCCCcceeecccccCC--------CCCCCCcchhhHH--------------------------HHHHHhhcccCC-
Q psy8670         161 ARLHDLGVGAVWISPIFKSP--------MADFGYDISDYLR--------------------------IKILLDFVPNHT-  205 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~--------~~dlny~n~d~~~--------------------------i~ii~d~v~nh~-  205 (224)
                      ++++++|++.+|++|++.++        ..+++|+..|++.                          |+||+|+|+||+ 
T Consensus       693 dyLk~LGVtaIwL~Pi~~~~~~~~~~~~~~~~GYd~~d~~~~~~~i~~~~Gt~~efk~lV~alH~~GI~VIlDvV~NHta  772 (1039)
T 3klk_A          693 DLFKSWGITTFELAPQYNSSKDGTFLDSIIDNGYAFTDRYDLGMSTPNKYGSDEDLRNALQALHKAGLQAIADWVPDQIY  772 (1039)
T ss_dssp             HHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSCSSCBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred             HHHHHcCCCEEEECccccCCcccccccCcCCCCCCcccccccccCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccCCcC
Confidence            44578999999999999874        4678888777641                          589999999998 


Q ss_pred             -CCCcHHHHHhhcC
Q psy8670         206 -SNQHEWFKKSLAN  218 (224)
Q Consensus       206 -~~~~~W~~~~~~~  218 (224)
                       +++|+|++..+.+
T Consensus       773 ~~~~~e~~~~~~~~  786 (1039)
T 3klk_A          773 NLPGKEAVTVTRSD  786 (1039)
T ss_dssp             CCCEEEEEEEEEEC
T ss_pred             CCCCCcceEEEEEC
Confidence             6999999877766

>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*

Probab=97.06  E-value=4.8e-05  Score=68.86  Aligned_cols=49  Identities=33%  Similarity=0.435  Sum_probs=39.4

Q ss_pred             hhcccCCCcceeecccccCCCCC-----CCCcchhhH---------------------HHHHHHhhcccCCCCCc
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMAD-----FGYDISDYL---------------------RIKILLDFVPNHTSNQH  209 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~d-----lny~n~d~~---------------------~i~ii~d~v~nh~~~~~  209 (224)
                      ++++++|++.+|++|++.++..+     ++|+..||.                     .|+||+|+|+||++..|
T Consensus        30 dyL~~LGv~~I~l~Pi~~~~~~~~~~~~~gYd~~dy~idp~~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~  104 (471)
T 1jae_A           30 RFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMN  104 (471)
T ss_dssp             HTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCSCSEETTEEHHHHHHHHHHHHHTTCEEEEEECCSBCCSSC
T ss_pred             HHHHHcCCCEEEeCccccccCCCCCCcccccccccccccCCCCCHHHHHHHHHHHHHCCCEEEEEEecccccCCC
Confidence            34588999999999999987544     468777651                     16899999999999987

>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*

Probab=97.03  E-value=3e-05  Score=69.62  Aligned_cols=50  Identities=32%  Similarity=0.577  Sum_probs=41.5

Q ss_pred             hcccCCCcceeecccccCCCC--CCCCcchhhH---------H----------------------HHHHHhhcccCCCCC
Q psy8670         162 RLHDLGVGAVWISPIFKSPMA--DFGYDISDYL---------R----------------------IKILLDFVPNHTSNQ  208 (224)
Q Consensus       162 ~~~~lG~~~~w~~p~f~~~~~--dlny~n~d~~---------~----------------------i~ii~d~v~nh~~~~  208 (224)
                      +++++|++.+|++|++.++..  .++|+..||+         +                      |+||+|+|+||++..
T Consensus        36 yl~~lGvt~I~l~Pi~~~~~~~~~~gY~~~dy~~lg~~~~~~~id~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~  115 (435)
T 1mxg_A           36 EWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGG  115 (435)
T ss_dssp             HHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCC
T ss_pred             HHHHcCCCEEEeCCcccCCCCCCCCCcCcccccccccccccCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcccccCC
Confidence            447899999999999987643  5788888885         2                      589999999999988


Q ss_pred             cHH
Q psy8670         209 HEW  211 (224)
Q Consensus       209 ~~W  211 (224)
                      +.|
T Consensus       116 ~~~  118 (435)
T 1mxg_A          116 DLE  118 (435)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            764

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=97.01  E-value=1e-05  Score=76.69  Aligned_cols=53  Identities=36%  Similarity=0.736  Sum_probs=42.5

Q ss_pred             hhcccCCCcceeecccccC---C-----CCCCCCcchhhHH----------------------HHHHHhhcccCCCCCc-
Q psy8670         161 ARLHDLGVGAVWISPIFKS---P-----MADFGYDISDYLR----------------------IKILLDFVPNHTSNQH-  209 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~---~-----~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~-  209 (224)
                      ++++++|++.+|++|++.+   +     ...++|+..||++                      |+||+|+|+||++..| 
T Consensus        59 dyLk~LGv~aIwL~Pi~~~~~~~~~~g~~~~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~GikVilD~V~NHts~~~~  138 (686)
T 1qho_A           59 PYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKA  138 (686)
T ss_dssp             HHHHHHTCCEEEECCCEEECSSCSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBT
T ss_pred             HHHHhcCCCEEEECccccCCcccccCCCCCcCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccccccc
Confidence            3457899999999999975   1     2458999888763                      6899999999999988 


Q ss_pred             --HHHH
Q psy8670         210 --EWFK  213 (224)
Q Consensus       210 --~W~~  213 (224)
                        +|+.
T Consensus       139 ~~~~~~  144 (686)
T 1qho_A          139 NDSTFA  144 (686)
T ss_dssp             TBTTST
T ss_pred             cccccc
Confidence              4554

>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*

Probab=96.99  E-value=0.0022  Score=61.09  Aligned_cols=113  Identities=11%  Similarity=0.136  Sum_probs=75.5

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHTSN  139 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~  139 (224)
                      +-+.+.+.+ +.++++|++.+.|=--+.....++--...|+ .+|+ +|.  +.++.|++++|++||++.+-+.+..++.
T Consensus       344 ~e~~i~~~a-d~~~~~G~~~~viDDgW~~~r~~~~~~~Gdw-~~d~~kFP--~Glk~lvd~ih~~Glk~GlW~~P~~v~~  419 (720)
T 2yfo_A          344 TGDTIVDLA-KEAASLGIDMVVMDDGWFGKRNDDNSSLGDW-QVNETKLG--GSLAELITRVHEQGMKFGIWIEPEMINE  419 (720)
T ss_dssp             CHHHHHHHH-HHHHHHTCCEEEECSSSBTTCSSTTSCTTCC-SBCHHHHT--SCHHHHHHHHHHTTCEEEEEECTTEECS
T ss_pred             CHHHHHHHH-HHHHHcCCcEEEECcccccCCCcccccCCCC-eeChhhcC--ccHHHHHHHHHHCCCEEEEEecccccCC
Confidence            456677777 9999999999977543322211111122343 3443 344  2599999999999999999999999999


Q ss_pred             cchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         140 QHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       140 ~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      +++.++       ++++|++-..   .+...      .+..+-.+++.+|++++
T Consensus       420 ~S~l~~-------~hpdw~~~~~---~~~~~------~~~~~~~LD~t~Pea~~  457 (720)
T 2yfo_A          420 DSDLYR-------AHPDWAIRIQ---GKKPV------RSRNQLLLDFSRKEVRD  457 (720)
T ss_dssp             SSHHHH-------HCGGGBCCCT---TSCCC------CBTTBEEBCTTSHHHHH
T ss_pred             CCHHHH-------hCcceEEECC---CcCcc------cCCceEEECCCCHHHHH
Confidence            999998       7888876221   11111      12233458899999875

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=96.99  E-value=1.6e-05  Score=75.45  Aligned_cols=52  Identities=37%  Similarity=0.654  Sum_probs=42.3

Q ss_pred             hcccCCCcceeecccccCC------------CCCCCCcchhhHH----------------------HHHHHhhcccCCCC
Q psy8670         162 RLHDLGVGAVWISPIFKSP------------MADFGYDISDYLR----------------------IKILLDFVPNHTSN  207 (224)
Q Consensus       162 ~~~~lG~~~~w~~p~f~~~------------~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~  207 (224)
                      +++++|++.+|++|++.+.            ...++|+..||++                      |+||+|+|+||++.
T Consensus        65 yLk~LGvtaIwL~Pi~~~~~~~~~~~g~~g~~~~~GYd~~dy~~idp~~Gt~~dfk~Lv~~aH~~GikVilD~V~NHts~  144 (683)
T 3bmv_A           65 YLTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSP  144 (683)
T ss_dssp             TTGGGTCCEEEECCCEEECCCCEEETTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEE
T ss_pred             HHHHcCCCEEEeCccccCcccccccccccCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEccccccc
Confidence            5589999999999999741            2458999888763                      68999999999998


Q ss_pred             Cc---HHHH
Q psy8670         208 QH---EWFK  213 (224)
Q Consensus       208 ~~---~W~~  213 (224)
                      .|   +|+.
T Consensus       145 ~~~~~~~~~  153 (683)
T 3bmv_A          145 ASETDPTYA  153 (683)
T ss_dssp             CCSSCTTST
T ss_pred             ccccCcchh
Confidence            87   5553

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=96.95  E-value=2.6e-05  Score=73.92  Aligned_cols=52  Identities=40%  Similarity=0.675  Sum_probs=42.1

Q ss_pred             hcccCCCcceeecccccCC-----------CCCCCCcchhhHH----------------------HHHHHhhcccCCCCC
Q psy8670         162 RLHDLGVGAVWISPIFKSP-----------MADFGYDISDYLR----------------------IKILLDFVPNHTSNQ  208 (224)
Q Consensus       162 ~~~~lG~~~~w~~p~f~~~-----------~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~  208 (224)
                      +++++|++.+|++|++.+.           ...++|+..||++                      |+||+|+|+||++..
T Consensus        65 yLk~LGvt~IwL~Pi~~~~~~~~~~~g~~~~~~~GYd~~dy~~idp~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NHts~~  144 (686)
T 1d3c_A           65 YLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPA  144 (686)
T ss_dssp             TTGGGTCCEEEECCCEEECCCCEESSSCEECCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEC
T ss_pred             HHHhcCCCEEEeCCcccCCcccccccCccCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCcCccccc
Confidence            5589999999999999742           2348999888863                      689999999999988


Q ss_pred             c---HHHH
Q psy8670         209 H---EWFK  213 (224)
Q Consensus       209 ~---~W~~  213 (224)
                      |   +|++
T Consensus       145 ~~~~~~~~  152 (686)
T 1d3c_A          145 SSDQPSFA  152 (686)
T ss_dssp             CSSCTTST
T ss_pred             cccccchh
Confidence            7   5554

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=96.85  E-value=8.6e-05  Score=72.68  Aligned_cols=57  Identities=30%  Similarity=0.501  Sum_probs=44.5

Q ss_pred             chhcccCCCcceeecccccCCCC--------CCCCcchhh--------------------HH---------HHHHHhhcc
Q psy8670         160 LARLHDLGVGAVWISPIFKSPMA--------DFGYDISDY--------------------LR---------IKILLDFVP  202 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~~--------dlny~n~d~--------------------~~---------i~ii~d~v~  202 (224)
                      +++++++|++.+|++|++..+..        ..+|+..||                    .+         |+||||+|+
T Consensus       475 LdyLk~LGvtaI~L~Pi~e~~~~de~~~~~~~wGYd~~dy~ap~~~y~~dp~Gt~~~~dfk~LV~~aH~~GI~VILDvV~  554 (921)
T 2wan_A          475 IDSLKELGITTVQLQPVEEFNSIDETQPDTYNWGYDPRNYNVPEGAYATTPEGTARITELKQLIQSLHQQRIGVNMDVVY  554 (921)
T ss_dssp             HHHHHHHTCCEEEESCCEEESSSCTTSTTSCCCCCSEEEEEEECGGGSSCSSTTHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred             hHHHHHcCCCEEEeCCccccCcccccccCcCCcCCCCcCCCCCCcccccCCCCCccHHHHHHHHHHHHHcCCEEEEEEcc
Confidence            46678899999999999986532        256665544                    22         589999999


Q ss_pred             cCCCCCc-HHHHHhh
Q psy8670         203 NHTSNQH-EWFKKSL  216 (224)
Q Consensus       203 nh~~~~~-~W~~~~~  216 (224)
                      ||++..| .||++..
T Consensus       555 NHt~~~~~~~f~~~~  569 (921)
T 2wan_A          555 NHTFDVMVSDFDKIV  569 (921)
T ss_dssp             TCCSCSSSSHHHHHS
T ss_pred             ccccccccccccCCC
Confidence            9999999 7998764

>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A*

Probab=96.77  E-value=4.7e-05  Score=73.63  Aligned_cols=58  Identities=22%  Similarity=0.444  Sum_probs=45.9

Q ss_pred             hhcccCCCcceeecccccCCCC--------CCCCcchhhHH--------------------------HHHHHhhcccCC-
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMA--------DFGYDISDYLR--------------------------IKILLDFVPNHT-  205 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~--------dlny~n~d~~~--------------------------i~ii~d~v~nh~-  205 (224)
                      ++++++|++.+|++|++.++..        +.||+..|++.                          |+||+|+|+||+ 
T Consensus       640 ~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~GY~~~d~~~i~es~~~~~Gt~~df~~lv~~~H~~GI~VilD~V~NH~~  719 (844)
T 3aie_A          640 DKFAEWGVTDFEMAPQYVSSTDGSFLDSVIQNGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSKGIKVMADWVPDQMY  719 (844)
T ss_dssp             HHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSCSSCBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred             HHHHHCCCCeEEECCcccCCCCCccccccCCCCCccccCccCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccCccc
Confidence            3457799999999999987653        68888877651                          579999999998 


Q ss_pred             -CCCcHHHHHhhcC
Q psy8670         206 -SNQHEWFKKSLAN  218 (224)
Q Consensus       206 -~~~~~W~~~~~~~  218 (224)
                       +++|+|+...+..
T Consensus       720 ~~d~~~~~~~~~~~  733 (844)
T 3aie_A          720 ALPEKEVVTATRVD  733 (844)
T ss_dssp             CCSEEEEEEEEEEC
T ss_pred             CCCCCcceeEeecc
Confidence             5889998665443

>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*

Probab=96.76  E-value=8.1e-05  Score=66.92  Aligned_cols=49  Identities=24%  Similarity=0.306  Sum_probs=37.3

Q ss_pred             hhcccCCCcceeecccccCCCCC---CCCcchhh------------H---------HHHHHHhhcccCCCCCc
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMAD---FGYDISDY------------L---------RIKILLDFVPNHTSNQH  209 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~d---lny~n~d~------------~---------~i~ii~d~v~nh~~~~~  209 (224)
                      ++++++|++.+|++|++.++...   ++|+..+|            .         .|+||+|+|+||++..|
T Consensus        22 dyL~~LGv~~I~l~Pi~~~~~~~~~~~gY~~~~y~idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~   94 (448)
T 1g94_A           22 QYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGS   94 (448)
T ss_dssp             HTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEEECSEECSSC
T ss_pred             HHHHHcCCCEEEECCccccCCCCCCcccccccccccCCCCCCHHHHHHHHHHHHHCCCEEEEEEeeccccCCC
Confidence            44578999999999999876422   46644433            1         16899999999999987

>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A*

Probab=96.67  E-value=0.0057  Score=52.16  Aligned_cols=71  Identities=14%  Similarity=0.240  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCC--------CCCHHHHHHHHHHHHHcCCEEEEe
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPL--------FGDLKDFETLKERLHALGIKILLD  131 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~--------~G~~~~~~~lv~~~h~~gi~vilD  131 (224)
                      +-..+.+.+ +.+|++|+|+|.+....+... ...| .+  ++.+.+.        -...+.+.++++.|+++||+||+|
T Consensus        34 ~~~~~~~~l-~~~k~~G~N~vR~~~~~~~~~~P~~~-~~--~~~~~~~~~~~~~~~~~~~~~ld~~i~~a~~~Gi~vild  109 (344)
T 1qnr_A           34 NHADVDSTF-SHISSSGLKVVRVWGFNDVNTQPSPG-QI--WFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIP  109 (344)
T ss_dssp             CHHHHHHHH-HHHHHTTCCEEECCCCCEESSCCSTT-CC--CSEECCTTCCEECCSTTTTHHHHHHHHHHHHHTCEEEEE
T ss_pred             CHHHHHHHH-HHHHHcCCCEEEEccccCCCCCCCCC-ce--eeeecCCCCcccccCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            456777888 999999999999942221100 0000 00  1222211        234789999999999999999999


Q ss_pred             cCCC
Q psy8670         132 FVPN  135 (224)
Q Consensus       132 ~v~n  135 (224)
                      +.-+
T Consensus       110 ~~~~  113 (344)
T 1qnr_A          110 FVNN  113 (344)
T ss_dssp             SCBS
T ss_pred             eccC
Confidence            9755

>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}

Probab=96.64  E-value=0.021  Score=54.44  Aligned_cols=113  Identities=13%  Similarity=0.155  Sum_probs=76.4

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHTSN  139 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~  139 (224)
                      +-+.+.+.+ +.++++|++.+.|=--+.....+.--...|+ ..|+ +|.  +.|+.|++++|++||++.+=+.+..++.
T Consensus       345 tee~il~~a-d~~~~~G~e~fviDDGW~~~r~~d~~~~Gdw-~~d~~kFP--~Gl~~lv~~ih~~Glk~glW~~Pe~v~~  420 (745)
T 3mi6_A          345 NEAKLMTIV-NQAKRLGIEMFVLDDGWFGHRDDDTTSLGDW-FVDQRKFP--DGIEHFSQAVHQQGMKFGLWFEPEMVSV  420 (745)
T ss_dssp             CHHHHHHHH-HHHHHHTCCEEEECTTCBTTCSSTTSCTTCC-SBCTTTCT--THHHHHHHHHHHTTCEEEEEECTTEECS
T ss_pred             CHHHHHHHH-HHHHHcCCcEEEECcccccCCCCCcccCCCc-eeChhhcC--ccHHHHHHHHHHCCCEEEEEEcccccCC
Confidence            446677777 9999999998776443332211111123344 4453 354  4699999999999999999999999999


Q ss_pred             cchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         140 QHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       140 ~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      +++.++       ++++|++-..   .|.      +.....+..+++.||++++
T Consensus       421 dS~l~~-------~hPdw~l~~~---~g~------~~~~r~~~vLD~tnPevr~  458 (745)
T 3mi6_A          421 DSDLYQ-------QHPDWLIHAP---KST------PTPGRHQFVLDMARPEVVD  458 (745)
T ss_dssp             SSSHHH-------HCGGGBCCCT---TCC------CCCSSSCEEBCTTCHHHHH
T ss_pred             CCHHHH-------hCcceEEEcC---CCc------eeecCCeEEECCCCHHHHH
Confidence            999998       7788886321   111      1112234568999999887

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=96.60  E-value=0.00017  Score=66.18  Aligned_cols=52  Identities=25%  Similarity=0.407  Sum_probs=38.0

Q ss_pred             hhcccCCCcceeecccccC---------CCCCCCCc--c----h------hhHH---------HHHHHhhcccCCCCCcH
Q psy8670         161 ARLHDLGVGAVWISPIFKS---------PMADFGYD--I----S------DYLR---------IKILLDFVPNHTSNQHE  210 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~---------~~~dlny~--n----~------d~~~---------i~ii~d~v~nh~~~~~~  210 (224)
                      ++++++|++.+|++|++..         ...+++|+  .    |      |+.+         |+||+|+|+||++..|+
T Consensus        44 dyLk~LGvt~IwL~Pi~e~~~~~~~~~~~~~~~GY~~~~id~~p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NHt~~~~~  123 (527)
T 1gcy_A           44 ATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYP  123 (527)
T ss_dssp             HHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSSCSCSSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCS
T ss_pred             HHHHhcCCCEEEeCCccccccccccCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeecCcCCCCC
Confidence            4558899999999999932         11456663  1    1      2222         68999999999999998


Q ss_pred             ---HH
Q psy8670         211 ---WF  212 (224)
Q Consensus       211 ---W~  212 (224)
                         |+
T Consensus       124 ~~~~~  128 (527)
T 1gcy_A          124 DKEIN  128 (527)
T ss_dssp             SCSCC
T ss_pred             Ccccc
Confidence               65

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=96.56  E-value=0.00016  Score=67.66  Aligned_cols=52  Identities=21%  Similarity=0.463  Sum_probs=42.4

Q ss_pred             hhcccCCCcceeecccccCCCC-CCCCcchhhHH----------------------HHHHHhhcccCCC-CCcHHH
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMA-DFGYDISDYLR----------------------IKILLDFVPNHTS-NQHEWF  212 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~-dlny~n~d~~~----------------------i~ii~d~v~nh~~-~~~~W~  212 (224)
                      ++++++|++.+|++|++..+.. .++|+..||+.                      |+||||+|+||++ +.|.|.
T Consensus       163 ~yl~~lGv~~i~l~Pi~~~~~~~~~GY~~~~y~~~~~~~Gt~~~~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~  238 (617)
T 1m7x_A          163 PYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALA  238 (617)
T ss_dssp             HHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEEECTTSCCCSTTSST
T ss_pred             HHHHHcCCCEEEecccccCCCCCCCCcccccCCccCccCCCHHHHHHHHHHHHHCCCEEEEEEecCcccCccchhh
Confidence            6678999999999999988653 47899888863                      5899999999994 556664

>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*

Probab=96.48  E-value=0.00034  Score=66.46  Aligned_cols=55  Identities=29%  Similarity=0.555  Sum_probs=41.2

Q ss_pred             chhcccCCCcceeecccccCCC--------------CCCC--Ccchh----hHH----------------------HHHH
Q psy8670         160 LARLHDLGVGAVWISPIFKSPM--------------ADFG--YDISD----YLR----------------------IKIL  197 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~--------------~dln--y~n~d----~~~----------------------i~ii  197 (224)
                      +++++++|++.+|++|++.++.              .+.|  |+..|    |+.                      |+||
T Consensus       259 LdyLk~LGvt~I~L~Pi~~~~~~~~~g~~n~~~~~~~d~GspY~i~d~~~~y~~idp~~Gt~edfk~LV~~aH~~GI~Vi  338 (695)
T 3zss_A          259 LPAIAAMGFDVVYLPPIHPIGTTHRKGRNNTLSATGDDVGVPWAIGSPEGGHDSIHPALGTLDDFDHFVTEAGKLGLEIA  338 (695)
T ss_dssp             HHHHHHTTCCEEEECCCSCBCCTTCCCGGGCSSCCTTCCCCTTSBCBTTBCTTSCCTTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHhCCCCEEEECCcccCCccccccccccccccccCCCCcccccCCCCCccccCcccCCHHHHHHHHHHHHHCCCEEE
Confidence            3556789999999999998642              1333  55444    432                      6899


Q ss_pred             HhhcccCCCCCcHHHHHh
Q psy8670         198 LDFVPNHTSNQHEWFKKS  215 (224)
Q Consensus       198 ~d~v~nh~~~~~~W~~~~  215 (224)
                      +|+|+|| +..|+|+++.
T Consensus       339 lD~V~Nh-s~~~~~~~~~  355 (695)
T 3zss_A          339 LDFALQC-SPDHPWVHKH  355 (695)
T ss_dssp             EEECCEE-CTTSTHHHHC
T ss_pred             EEeeccC-Cccchhhhcc
Confidence            9999998 8889999764

>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...

Probab=96.45  E-value=8.8e-05  Score=66.47  Aligned_cols=55  Identities=25%  Similarity=0.237  Sum_probs=40.2

Q ss_pred             cccCCCcceeecccccCCCC-------CCCCcchhh------------HH---------HHHHHhhcccCCCCCcHHHHH
Q psy8670         163 LHDLGVGAVWISPIFKSPMA-------DFGYDISDY------------LR---------IKILLDFVPNHTSNQHEWFKK  214 (224)
Q Consensus       163 ~~~lG~~~~w~~p~f~~~~~-------dlny~n~d~------------~~---------i~ii~d~v~nh~~~~~~W~~~  214 (224)
                      ++++|++.+|++|+..+...       -++|...||            .+         |+||+|+|+||++..|+|++.
T Consensus        32 l~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~dy~i~~~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~  111 (496)
T 4gqr_A           32 LAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVSYKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT  111 (496)
T ss_dssp             TTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEEEETTSCSBS
T ss_pred             HHHhCCCEEEeCccccCccCCCCCCCcccccCccCceeCCCCCCHHHHHHHHHHHHHCCCEEEEEEccCcCCCccccccc
Confidence            57899999999999775211       135554443            21         689999999999999999865


Q ss_pred             hhc
Q psy8670         215 SLA  217 (224)
Q Consensus       215 ~~~  217 (224)
                      ...
T Consensus       112 ~~~  114 (496)
T 4gqr_A          112 SST  114 (496)
T ss_dssp             CBT
T ss_pred             cCc
Confidence            443

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=96.28  E-value=0.00032  Score=65.81  Aligned_cols=55  Identities=24%  Similarity=0.375  Sum_probs=44.1

Q ss_pred             hhcccCCCcceeecccccCC-CCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHh
Q psy8670         161 ARLHDLGVGAVWISPIFKSP-MADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKS  215 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~-~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~  215 (224)
                      ++.+++|++.+|++|++..+ ....+|+..|++.                      |+||+|+|+||++.++.|+.+.
T Consensus       161 ~yl~~lGv~~v~l~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~~~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~  238 (618)
T 3m07_A          161 PYLAELGVTVIEVMPVAQFGGERGWGYDGVLLYAPHSAYGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGPEGNYLPLL  238 (618)
T ss_dssp             HHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCHHHH
T ss_pred             HHHHHcCCCEEEeCChhccCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEeecCccCCCCccccccc
Confidence            55678999999999997643 3467888777642                      5799999999999999999764

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=96.23  E-value=0.00029  Score=67.56  Aligned_cols=52  Identities=27%  Similarity=0.552  Sum_probs=43.3

Q ss_pred             chhcccCCCcceeecccccCC-CCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHH
Q psy8670         160 LARLHDLGVGAVWISPIFKSP-MADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEW  211 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~-~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W  211 (224)
                      +++.+++|++.+|++|++..+ ....+|+..||+.                      |+||||+|+||++..|.|
T Consensus       208 L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~dy~a~~~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~  282 (755)
T 3aml_A          208 LPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTD  282 (755)
T ss_dssp             HHHHHHTTCCEEEEESCEECSCGGGTTCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSCBCCCTTT
T ss_pred             HHHHHHcCCCEEEECchhcCCCCCCCCCccCCCCccCCCCCCHHHHHHHHHHHHHCCCEEEEEEecccccccccc
Confidence            466788999999999999875 3568899888753                      689999999999988754

>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A*

Probab=96.19  E-value=0.046  Score=52.13  Aligned_cols=113  Identities=12%  Similarity=0.099  Sum_probs=74.7

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCC-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPL-FGDLKDFETLKERLHALGIKILLDFVPNHTSN  139 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~-~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~  139 (224)
                      +-+.+.+.+ +.++++|++.+.|=--+.....++.-...|+ .+||. |.+  .++.|++.+|++||++.+=+.+..++.
T Consensus       348 ~ee~v~~~a-d~~~~~G~~~~viDDGW~~~r~~~~~~~Gd~-~~d~~kFP~--Glk~lv~~ih~~Glk~GlW~~P~~v~~  423 (732)
T 2xn2_A          348 NEDKLKTIV-DKAKKLGLEMFVLDDGWFGHRDDDNSSLGDW-KVYKKKFPN--GLGHFADYVHEQGLKFGLWFEPEMISY  423 (732)
T ss_dssp             CHHHHHHHH-HHHHHTTCCEEEECSSSBTTCSSTTSCTTCC-SBCTTTCTT--CHHHHHHHHHHTTCEEEEEECTTEECS
T ss_pred             CHHHHHHHH-HHHHHcCCcEEEEcCcccccCCCCccccCce-eeCchhcCc--cHHHHHHHHHHcCCEEEEEeCccccCC
Confidence            456677777 9999999999876322221111110112344 56654 643  599999999999999999999988889


Q ss_pred             cchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         140 QHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       140 ~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      +++.++       ++++|++-    ..|....     ++..+--+++.+|++++
T Consensus       424 ~S~l~~-------~hpdw~~~----~~g~~~~-----~~~~~~~LD~t~Pev~~  461 (732)
T 2xn2_A          424 ESNLYK-------EHPDYLXH----VPGRKPC-----PSRNQYVLELGRKEVRD  461 (732)
T ss_dssp             SSHHHH-------HCGGGBCC----CTTSCCC-----CBTTBEEBCTTSHHHHH
T ss_pred             CCHHHH-------hCchheec----CCCCCCc-----cCCceEEEcCCCHHHHH
Confidence            999998       67787752    2221111     12233458899998876

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=96.09  E-value=0.00033  Score=64.83  Aligned_cols=56  Identities=36%  Similarity=0.548  Sum_probs=44.0

Q ss_pred             chhcccCCCcceeecccccCC-CCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHh
Q psy8670         160 LARLHDLGVGAVWISPIFKSP-MADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKS  215 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~-~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~  215 (224)
                      +++.+++|++.+|++|++..+ ....+|+..+++.                      |+||+|+|+||++.++.|+.+.
T Consensus       125 l~~l~~lG~~~v~l~Pi~~~~~~~~~GY~~~~~~~~~~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~  203 (558)
T 3vgf_A          125 LDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKL  203 (558)
T ss_dssp             HHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGTHHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCGGGT
T ss_pred             HHHHHHcCCcEEEECCcccCCCCCCcCcccccccccccccCCHHHHHHHHHHHHHcCCEEEEEEeeccccCCCCccccc
Confidence            355678999999999998753 2456788776542                      5799999999999999988654

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=96.09  E-value=0.00045  Score=65.86  Aligned_cols=52  Identities=31%  Similarity=0.613  Sum_probs=39.7

Q ss_pred             chhcccCCCcceeecccccCCCC----------CCCCcchhhH--------------------H---------HHHHHhh
Q psy8670         160 LARLHDLGVGAVWISPIFKSPMA----------DFGYDISDYL--------------------R---------IKILLDF  200 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~~----------dlny~n~d~~--------------------~---------i~ii~d~  200 (224)
                      +++++++|++.+|++|++.....          ..+|+..||+                    +         |+||||+
T Consensus       208 l~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~~wGY~~~~y~~~~~~yGt~~~~~~~~~dfk~lv~~~H~~Gi~VilDv  287 (718)
T 2vr5_A          208 ISYLKDLGITTVELMPVFHFIDQRFLTDKGLTNYWGYDPINFFSPECRYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDV  287 (718)
T ss_dssp             HHHHHHHTCCEEEECCCBCBCCCHHHHTTTCCCSSCCCBSCSSSBCGGGCSSCTTTHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             hHHHHHcCCCeEEEeCCEecCccccccccCCcCccCcCcccCcccChhhcCCCCCCchHHHHHHHHHHHHHCCCEEEEEe
Confidence            45668899999999999986532          1466544442                    2         5899999


Q ss_pred             cccCCCCCcHH
Q psy8670         201 VPNHTSNQHEW  211 (224)
Q Consensus       201 v~nh~~~~~~W  211 (224)
                      |+||++..|+|
T Consensus       288 V~NH~~~~~~~  298 (718)
T 2vr5_A          288 VYNHTAEGNHL  298 (718)
T ss_dssp             CCSCCSSCSTT
T ss_pred             ccCcccCcccc
Confidence            99999999987

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=96.07  E-value=0.00031  Score=66.33  Aligned_cols=53  Identities=25%  Similarity=0.360  Sum_probs=41.1

Q ss_pred             chhcccCCCcceeecccccCCCC----------CCCCcchhh------------------HH---------HHHHHhhcc
Q psy8670         160 LARLHDLGVGAVWISPIFKSPMA----------DFGYDISDY------------------LR---------IKILLDFVP  202 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~~----------dlny~n~d~------------------~~---------i~ii~d~v~  202 (224)
                      +++++++|++.+|++|++..+..          ..+|+..||                  .+         |+||||+|+
T Consensus       185 l~yL~~LGvt~i~L~Pi~~~~~~~~~~~~g~~~~wGY~~~~y~~~~~~~G~~p~~~~~d~~~lv~~~H~~Gi~VilD~V~  264 (657)
T 2wsk_A          185 INYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVL  264 (657)
T ss_dssp             HHHHHHHTCCEEEESCCEEECCCHHHHTTTCCCSSCCCEEEEEEECGGGCSSGGGHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             hHHHHHcCCCEEEECCccccCccccccccccccccCcCcccCCCCCHHHcCCCCcCHHHHHHHHHHHHHCCCEEEEEEee
Confidence            45678899999999999987543          246765544                  21         589999999


Q ss_pred             cCCCCCcHHH
Q psy8670         203 NHTSNQHEWF  212 (224)
Q Consensus       203 nh~~~~~~W~  212 (224)
                      ||++..|+|+
T Consensus       265 NH~~~~~~~~  274 (657)
T 2wsk_A          265 NHSAELDLDG  274 (657)
T ss_dssp             SCCTTCSTTS
T ss_pred             cccccccccC
Confidence            9999999884

>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A*

Probab=95.91  E-value=0.029  Score=50.64  Aligned_cols=66  Identities=24%  Similarity=0.260  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHcCCCeEEEcCcccC-CCCCCCCCccCCCCcCCCC---CCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          65 MIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLF---GDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        65 ~~~~l~~~l~~lG~~~i~l~Pi~~~-~~~~~gY~~~d~~~v~~~~---G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      +.+.+ +.++++|+|+|-++=-.+. ...... ...+ +..+|.+   ...+.+.++|+.|+++||+||+|+-
T Consensus        86 ~~~~i-~~ik~~G~N~VRipi~~~~l~~~~~p-~~~~-~~~np~~~~~~~l~~ld~vV~~a~~~Gi~VIldlH  155 (458)
T 3qho_A           86 WEDML-LQIKSLGFNAIRLPFCTESVKPGTQP-IGID-YSKNPDLRGLDSLQIMEKIIKKAGDLGIFVLLDYH  155 (458)
T ss_dssp             HHHHH-HHHHHTTCCEEEEEEETGGGSTTCCC-CCCC-TTTCGGGTTCCHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHH-HHHHHcCCCEEEEeeeHHHhCCCCCc-cccc-cccCccccchHHHHHHHHHHHHHHHCCCEEEEecc
Confidence            55666 9999999999999611111 000000 0112 2456654   3478999999999999999999994

>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A

Probab=95.85  E-value=0.023  Score=48.80  Aligned_cols=68  Identities=12%  Similarity=0.173  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCC---CHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          65 MIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFG---DLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G---~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      +.+.+ +.||++|+|+|-+.=-.+.-.....-...|+...+|.+.   ..+.+.++|+.|.++||+||+|+-
T Consensus        46 ~~~~~-~~~~~~G~n~vRi~~~~~~~~~~~~~~~~~~~~~np~~~g~~~~~~ld~~v~~a~~~Gi~vild~h  116 (358)
T 1ece_A           46 YRSML-DQIKSLGYNTIRLPYSDDILKPGTMPNSINFYQMNQDLQGLTSLQVMDKIVAYAGQIGLRIILDRH  116 (358)
T ss_dssp             HHHHH-HHHHHTTCCEEEEEEEGGGGSTTCCCCSCCCSSSCTTTTTCCHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHH-HHHHHcCCCEEEeeccHHHhcCCCCCccccccccCccccCccHHHHHHHHHHHHHHCCCEEEEecC
Confidence            45666 999999999999862211100000001223323555543   478899999999999999999995

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=95.77  E-value=0.0008  Score=64.43  Aligned_cols=53  Identities=34%  Similarity=0.557  Sum_probs=40.6

Q ss_pred             chhcccCCCcceeecccccCCCC-------------CCCCcchhhH--------------------H---------HHHH
Q psy8670         160 LARLHDLGVGAVWISPIFKSPMA-------------DFGYDISDYL--------------------R---------IKIL  197 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~~-------------dlny~n~d~~--------------------~---------i~ii  197 (224)
                      +++++++|++.+|++|++.....             ..+|+..||+                    +         |+||
T Consensus       211 l~yLk~LGvt~V~L~Pi~~~~~~~~~~~~~~~g~~~~wGY~~~dy~~~~~~yGt~~~~~~~~~efk~lV~~~H~~Gi~Vi  290 (750)
T 1bf2_A          211 ASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVY  290 (750)
T ss_dssp             HHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBSCSSCBCGGGCSCCSTTHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHcCCCEEEECCcccCccccccccccccccccccCcCcccccccCccccCCCCCccHHHHHHHHHHHHHHCCCEEE
Confidence            35567899999999999986422             1467655543                    1         5799


Q ss_pred             HhhcccCCCCCcHHH
Q psy8670         198 LDFVPNHTSNQHEWF  212 (224)
Q Consensus       198 ~d~v~nh~~~~~~W~  212 (224)
                      ||+|+||++..++|.
T Consensus       291 lDvV~NH~~~~~~~~  305 (750)
T 1bf2_A          291 MDVVYNHTAEGGTWT  305 (750)
T ss_dssp             EEECCSSCTTCSBSS
T ss_pred             EEEecccccCccccc
Confidence            999999999999886

>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}

Probab=95.58  E-value=0.022  Score=47.32  Aligned_cols=70  Identities=13%  Similarity=0.148  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCC-CcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          62 LKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYL-SFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        62 l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~-~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      .+.+.+.| +.+|++|+|+|-+. ++........+...... ..+..-.-.+.+.++++.|.++||+||+|+-
T Consensus        41 ~~~~~~~l-~~~k~~G~N~vRv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~~Gi~vil~~~  111 (351)
T 3vup_A           41 KNRIEPEF-KKLHDAGGNSMRLW-IHIQGETTPAFNDQGFVTGPDKQGTMLDDMKDLLDTAKKYNILVFPCLW  111 (351)
T ss_dssp             HHHHHHHH-HHHHHTTCCEEEEE-EEETTSSSSEECTTSCEEESCSSSCHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHH-HHHHHcCCcEEEEC-cccccccCcccccccccccccccHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            34456667 99999999999873 22111000000000000 0001112367899999999999999999984

>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.56  E-value=0.039  Score=47.90  Aligned_cols=63  Identities=17%  Similarity=0.067  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHcCCCeEEEcCcc-cCCCCCCCCCccCCCCcCCCCC---CHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670          64 GMIEKLPEHLHDLGVGAVWISPIF-KSPMADFGYDISDYLSFEPLFG---DLKDFETLKERLHALGIKILLDFVPN  135 (224)
Q Consensus        64 ~~~~~l~~~l~~lG~~~i~l~Pi~-~~~~~~~gY~~~d~~~v~~~~G---~~~~~~~lv~~~h~~gi~vilD~v~n  135 (224)
                      +..+.| +.|+++|+|+|-|.+.. +....+.        .+.-.+|   +.+++.+++++|+++||+|+++.-+.
T Consensus        54 ~~~~~l-~~lk~~g~N~VrL~v~~~~~~~~~~--------~~~~~~~~t~~~~~v~~~~~~Ak~~GL~V~l~p~i~  120 (343)
T 3civ_A           54 EARASM-RALAEQPFNWVTLAFAGLMEHPGDP--------AIAYGPPVTVSDDEIASMAELAHALGLKVCLKPTVN  120 (343)
T ss_dssp             HHHHHH-HHHHHSSCSEEEEEEEEEESSTTCC--------CCBCSTTTBCCHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             hHHHHH-HHHHHcCCCEEEEEeeecCCCCCCC--------cccccCCCCCCHHHHHHHHHHHHHCCCEEEEEEEee
Confidence            445666 99999999999998753 3221111        0111233   68999999999999999999987543

>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A

Probab=95.39  E-value=0.026  Score=48.44  Aligned_cols=52  Identities=23%  Similarity=0.408  Sum_probs=38.9

Q ss_pred             HHHHHH-HHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          68 KLPEHL-HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        68 ~l~~~l-~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      .+ +.| +++|+|+|-+ |++...   .||      ..||.  ..+.+.++|+.|.++||.||+|+
T Consensus        73 ~~-~~l~~~~G~N~VRi-~~~~~~---~~~------~~~~~--~~~~ld~~v~~a~~~Gi~VilD~  125 (327)
T 3pzt_A           73 SL-KWLRDDWGITVFRA-AMYTAD---GGY------IDNPS--VKNKVKEAVEAAKELGIYVIIDW  125 (327)
T ss_dssp             HH-HHHHHHTCCSEEEE-EEESST---TST------TTCGG--GHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HH-HHHHHhcCCCEEEE-EeEECC---CCc------ccCHH--HHHHHHHHHHHHHHCCCEEEEEe
Confidence            45 778 6899999999 444321   222      23443  37899999999999999999998

>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A

Probab=95.30  E-value=0.02  Score=48.98  Aligned_cols=59  Identities=14%  Similarity=0.207  Sum_probs=39.7

Q ss_pred             HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      +.+ +.||++|+|+|-|.--...-....+  +   ..+++  +..+.++++|+.|+++||+||+|+-
T Consensus        32 ~d~-~~i~~~G~n~vRi~i~~~~~~~~~~--~---g~~~~--~~~~~l~~~v~~a~~~Gi~vildlh   90 (343)
T 1ceo_A           32 KDI-ETIAEAGFDHVRLPFDYPIIESDDN--V---GEYKE--DGLSYIDRCLEWCKKYNLGLVLDMH   90 (343)
T ss_dssp             HHH-HHHHHHTCCEEEEEEEGGGTBCSSS--T---TCBCH--HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHH-HHHHHcCCCEEEecCCHHHhccccC--C---CcccH--HHHHHHHHHHHHHHHCCCEEEEEec
Confidence            445 9999999999998643322100000  0   01221  2467899999999999999999984

>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*

Probab=95.22  E-value=0.035  Score=47.89  Aligned_cols=47  Identities=23%  Similarity=0.299  Sum_probs=36.9

Q ss_pred             HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      ..||++|+|+|-+. ++-.+     |         +.+-+.+.+.+++++|+++||+|++|+
T Consensus        34 ~ilk~~G~N~VRi~-~w~~P-----~---------~g~~~~~~~~~~~~~A~~~GlkV~ld~   80 (332)
T 1hjs_A           34 NILAANGVNTVRQR-VWVNP-----A---------DGNYNLDYNIAIAKRAKAAGLGVYIDF   80 (332)
T ss_dssp             HHHHHTTCCEEEEE-ECSSC-----T---------TCTTSHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHCCCCEEEEe-eeeCC-----C---------CCcCCHHHHHHHHHHHHHCCCEEEEEe
Confidence            77799999999975 33111     1         234467899999999999999999998

>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A

Probab=95.17  E-value=0.045  Score=45.85  Aligned_cols=51  Identities=8%  Similarity=0.165  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          66 IEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      .+.+ +.||++|+|+|-+ |+...    ..|..          ...+.++++++.|.++||.||+|+
T Consensus        34 ~~~~-~~i~~~G~N~VRi-~~~~~----~~~~~----------~~~~~ld~~v~~a~~~Gi~Vild~   84 (294)
T 2whl_A           34 STAI-PAIAEQGANTIRI-VLSDG----GQWEK----------DDIDTIREVIELAEQNKMVAVVEV   84 (294)
T ss_dssp             HHHH-HHHHHTTCSEEEE-EECCS----SSSCC----------CCHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             HHHH-HHHHHcCCCEEEE-EecCC----CccCc----------cHHHHHHHHHHHHHHCCCEEEEEe
Confidence            4556 9999999999999 55411    01211          358899999999999999999998

>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13

Probab=95.15  E-value=0.032  Score=51.69  Aligned_cols=80  Identities=14%  Similarity=0.150  Sum_probs=57.3

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcC-CCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFE-PLFGDLKDFETLKERLHALGIKILLDFVPNHTSN  139 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~-~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~  139 (224)
                      +-+.+.+.+ +.++++|++.|.|=--+..       ...|+ ..| .+|.+   ++.|++++|++||++.+=+-+..++.
T Consensus       210 te~~v~~~a-d~~~~~G~~~~~IDdgW~~-------~~Gdw-~~d~~kFP~---lk~lvd~lh~~Glk~Giw~~P~~v~~  277 (564)
T 1zy9_A          210 TWEETLKNL-KLAKNFPFEVFQIDDAYEK-------DIGDW-LVTRGDFPS---VEEMAKVIAENGFIPGIWTAPFSVSE  277 (564)
T ss_dssp             CHHHHHHHH-HHGGGTTCSEEEECTTSEE-------ETTEE-EEECTTCCC---HHHHHHHHHHTTCEEEEEECTTEEET
T ss_pred             CHHHHHHHH-HHHHhcCCcEEEECccccc-------ccCCc-ccCcccCCC---HHHHHHHHHHCCCEEEEEeCCCccCC
Confidence            456677777 8889999999987222211       12233 233 44664   99999999999999999888876667


Q ss_pred             cchhHHhhhcCCCCcccccc
Q psy8670         140 QHEWFKKSLANIPPYKCASL  159 (224)
Q Consensus       140 ~~~w~~~~~~~~~~~~~~f~  159 (224)
                      +++.++       ++++||+
T Consensus       278 ~S~ly~-------~~pdw~v  290 (564)
T 1zy9_A          278 TSDVFN-------EHPDWVV  290 (564)
T ss_dssp             TCHHHH-------HCGGGBC
T ss_pred             CChhHH-------hCCCeEE
Confidence            777777       4678886

>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*

Probab=95.08  E-value=0.041  Score=46.62  Aligned_cols=59  Identities=8%  Similarity=0.127  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          66 IEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      .+.+ +.||++|+|+|-++=-+..-..     ..+-+.+++.  ..+.+.++++.|+++||+||+|+
T Consensus        44 ~~d~-~~l~~~G~n~vRi~i~w~~~~~-----~~~~~~~~~~--~~~~~d~~v~~a~~~Gi~vildl  102 (320)
T 3nco_A           44 DEYF-KIIKERGFDSVRIPIRWSAHIS-----EKYPYEIDKF--FLDRVKHVVDVALKNDLVVIINC  102 (320)
T ss_dssp             HHHH-HHHHHHTCCEEEECCCGGGSBC-----SSTTCCBCHH--HHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHH-HHHHHCCCCEEEEeeehHHhcC-----CCCCCccCHH--HHHHHHHHHHHHHHCCCEEEEEc
Confidence            3456 9999999999999521211100     0111233332  26789999999999999999998

>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3

Probab=94.99  E-value=0.045  Score=46.76  Aligned_cols=59  Identities=10%  Similarity=-0.007  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          66 IEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      .+.+ +.||++|+|+|-+.--...-....     +...+++  +..+.++++|+.|+++||+||+|+
T Consensus        39 ~~d~-~~i~~~G~n~vRi~i~~~~~~~~~-----~p~~~~~--~~~~~ld~~v~~a~~~Gi~vildl   97 (341)
T 1vjz_A           39 EEDF-LWMAQWDFNFVRIPMCHLLWSDRG-----NPFIIRE--DFFEKIDRVIFWGEKYGIHICISL   97 (341)
T ss_dssp             HHHH-HHHHHTTCCEEEEEEEGGGTSCSS-----CTTCCCG--GGHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHH-HHHHHcCCCEEEeeCCHHHhcCCC-----CCCcCCH--HHHHHHHHHHHHHHHcCCEEEEEe
Confidence            3455 899999999999863222110000     0112222  457889999999999999999998

>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3

Probab=94.99  E-value=0.045  Score=48.47  Aligned_cols=58  Identities=14%  Similarity=0.109  Sum_probs=38.9

Q ss_pred             HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCC-CHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFG-DLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G-~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      +.+ +.||++|+|+|-|+=-+..-....| .+  | .    .+ ..+.++++|+.|+++||+||||+-
T Consensus        77 ~d~-~~i~~~G~N~VRipi~~~~~~~~~~-~p--y-~----~~~~l~~ld~vv~~a~~~Gi~VilDlH  135 (408)
T 1h4p_A           77 QDF-ANIASQGFNLVRIPIGYWAFQILDD-DP--Y-V----SGLQESYLDQAIGWARNNSLKVWVDLH  135 (408)
T ss_dssp             HHH-HHHHHTTCCEEEEEEEGGGTCCCTT-CC--C-C----CSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHH-HHHHHCCCCEEEccCCHHHcccCCC-CC--C-c----cccHHHHHHHHHHHHHHCCCEEEEECC
Confidence            345 8899999999999421111100000 01  0 0    14 578899999999999999999994

>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*

Probab=94.92  E-value=0.00094  Score=62.70  Aligned_cols=55  Identities=22%  Similarity=0.530  Sum_probs=40.2

Q ss_pred             chhcccCCCcceeecccccCCCC----C--CCCcchhh---------------------HH---------HHHHHhhccc
Q psy8670         160 LARLHDLGVGAVWISPIFKSPMA----D--FGYDISDY---------------------LR---------IKILLDFVPN  203 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~~----d--lny~n~d~---------------------~~---------i~ii~d~v~n  203 (224)
                      +++.+++|++.+|++|++.....    .  .+|+..+|                     .+         |+||||+|+|
T Consensus       126 l~~l~~lG~~~v~l~Pi~~~~~~~~~g~~~~gY~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~H~~Gi~VilD~V~n  205 (637)
T 1gjw_A          126 LPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFIPR  205 (637)
T ss_dssp             HHHHHHHTCCEEEECCCEEECCSSCSSSSCCTTSEEEEEEECGGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             HHHHHHcCCCEEEeCCCeecccccccCCCCCccCCCCcCCcCcccCCCcccccchHHHHHHHHHHHHHCCCEEEEEECcC
Confidence            34567899999999999865421    1  15654443                     21         5799999999


Q ss_pred             CCCCCcHHHHH
Q psy8670         204 HTSNQHEWFKK  214 (224)
Q Consensus       204 h~~~~~~W~~~  214 (224)
                      |++..+.|+++
T Consensus       206 H~~~~~~~~~~  216 (637)
T 1gjw_A          206 TAARDSDLIRE  216 (637)
T ss_dssp             EEETTCGGGTT
T ss_pred             CCcCcchhhhh
Confidence            99999998765

>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*

Probab=94.85  E-value=0.087  Score=46.66  Aligned_cols=55  Identities=31%  Similarity=0.433  Sum_probs=38.5

Q ss_pred             HHHHHcCCCeEEEcCcccCCC--CCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670          71 EHLHDLGVGAVWISPIFKSPM--ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP  134 (224)
Q Consensus        71 ~~l~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~  134 (224)
                      ..|+++|+|+|-|- ++-.+.  ...+|..        ...+.+.+.+++++|+++||+||+|+-.
T Consensus        55 ~ilk~~G~N~VRlr-vwv~p~~~~g~~y~~--------g~~d~~~~~~~a~~Ak~~GLkVlldfHy  111 (399)
T 1ur4_A           55 KTLKEAGVNYVRVR-IWNDPYDANGNGYGG--------GNNDLEKAIQIGKRATANGMKLLADFHY  111 (399)
T ss_dssp             HHHHHTTCCEEEEE-ECSCCBCTTCCBCST--------TCCCHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             HHHHHCCCCEEEEe-eecCCcccccCccCC--------CCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence            88899999999973 332221  1112211        1135789999999999999999999843

>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A

Probab=94.84  E-value=0.041  Score=48.75  Aligned_cols=56  Identities=16%  Similarity=0.221  Sum_probs=39.0

Q ss_pred             HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCC-CCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPL-FGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~-~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      +.+ +.||++|+|+|-|+=-+..-....         -+|- -|..+-+.++|+.|+++||+||||+
T Consensus        77 ~D~-~~ik~~G~N~VRipi~~~~~~~~~---------~~py~~~~~~~ld~vV~~a~~~Gl~VILDl  133 (399)
T 3n9k_A           77 QDF-KQISNLGLNFVRIPIGYWAFQLLD---------NDPYVQGQVQYLEKALGWARKNNIRVWIDL  133 (399)
T ss_dssp             HHH-HHHHHTTCCEEEEEEEGGGTCCCT---------TCCCCCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHH-HHHHHcCCCEEEEcccHHHccCCC---------CCccchhHHHHHHHHHHHHHHCCCEEEEEe
Confidence            345 889999999999853222110000         0111 1467899999999999999999998

>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*

Probab=94.81  E-value=0.056  Score=45.37  Aligned_cols=50  Identities=8%  Similarity=0.157  Sum_probs=37.9

Q ss_pred             HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      +.+ +.||++|+|+|-+ |+....    .|..      +    ..+.++++++.|.++||+||+|+
T Consensus        36 ~~~-~~lk~~G~N~VRi-~~~~~~----~w~~------~----~~~~ld~~v~~a~~~Gi~Vild~   85 (302)
T 1bqc_A           36 QAF-ADIKSHGANTVRV-VLSNGV----RWSK------N----GPSDVANVISLCKQNRLICMLEV   85 (302)
T ss_dssp             THH-HHHHHTTCSEEEE-EECCSS----SSCC------C----CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHH-HHHHHcCCCEEEE-EccCCc----ccCC------C----CHHHHHHHHHHHHHCCCEEEEEe
Confidence            456 8999999999999 443210    1111      1    36889999999999999999997

>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A*

Probab=94.72  E-value=0.057  Score=47.61  Aligned_cols=69  Identities=14%  Similarity=0.256  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEcCcccCC----------C-CCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q psy8670          63 KGMIEKLPEHLHDLGVGAVWISPIFKSP----------M-ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLD  131 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~----------~-~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD  131 (224)
                      +.+.+.+ +.++++|+|+|-+.-.....          . ...-|+.-.  .++..--..+.|.++|++|+++||+||+|
T Consensus        43 ~~i~~~l-~~~a~~G~N~VRv~~f~d~~~~~~~~~~~lqp~~G~yd~~~--~~~~~~~~~~~LD~~i~~A~k~GI~viL~  119 (383)
T 3pzg_A           43 RMIDSVL-ESARDMGIKVLRIWGFLDGESYCRDKNTYMHPEPGVFGVPE--GISNAQNGFERLDYTIAKAKELGIKLIIV  119 (383)
T ss_dssp             HHHHHHH-HHHHHHTCCEEEEECCCBSHHHHHHHTEESBSBTTBCSSCT--TCSSCEEHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHH-HHHHHcCCCEEEEeccccccccccccccccccCCCcccccc--cccchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            4556667 99999999999885332110          0 001121100  11111112788999999999999999999


Q ss_pred             cCC
Q psy8670         132 FVP  134 (224)
Q Consensus       132 ~v~  134 (224)
                      +.-
T Consensus       120 l~~  122 (383)
T 3pzg_A          120 LVN  122 (383)
T ss_dssp             CCB
T ss_pred             ccc
Confidence            964

>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A*

Probab=94.62  E-value=0.19  Score=44.59  Aligned_cols=70  Identities=17%  Similarity=0.250  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCC-----HHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGD-----LKDFETLKERLHALGIKILLDFVPN  135 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~-----~~~~~~lv~~~h~~gi~vilD~v~n  135 (224)
                      +-..+.+.+ +.+|++|+|+|-+. .+...   .++...-+..+.+.-|.     .+.+.++++.|.++||+||+|+.-+
T Consensus        60 ~~~~~~~dl-~~~k~~G~N~vR~~-~~d~~---~~~~~~~~~~~~~~~g~~~e~~~~~lD~~l~~a~~~Gi~vil~l~~~  134 (440)
T 1uuq_A           60 DRDRLAKEL-DNLKAIGVNNLRVL-AVSEK---SEINSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYFNNF  134 (440)
T ss_dssp             CHHHHHHHH-HHHHHTTCCEEEEE-CCCBC---CCSTTSCSSCSBSSTTCBCHHHHHHHHHHHHHHHHTTCEEEEECCBS
T ss_pred             CHHHHHHHH-HHHHHcCCCEEEEC-cccCC---CCCcccccccccCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcccc
Confidence            566777778 99999999999997 21110   01100001122222232     4667799999999999999998744

>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}

Probab=94.52  E-value=0.08  Score=45.93  Aligned_cols=52  Identities=8%  Similarity=0.153  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          66 IEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      .+.+ +.|+++|+|+|-+ |+...    ..|.        +  ...+.++++|+.|.++||.||+|+-
T Consensus        57 ~~~i-~~lk~~G~N~VRi-p~~~~----~~~~--------~--~~l~~ld~~v~~a~~~GiyVIlDlH  108 (345)
T 3jug_A           57 STAI-PAIAEQGANTIRI-VLSDG----GQWE--------K--DDIDTVREVIELAEQNKMVAVVEVH  108 (345)
T ss_dssp             HHHH-HHHHHTTCSEEEE-EECCS----SSSC--------C--CCHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             HHHH-HHHHHcCCCEEEE-EecCC----CccC--------H--HHHHHHHHHHHHHHHCCCEEEEEec
Confidence            3567 9999999999999 44321    1111        1  2488999999999999999999994

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=94.46  E-value=0.0036  Score=59.58  Aligned_cols=52  Identities=31%  Similarity=0.528  Sum_probs=36.6

Q ss_pred             chhcccCCCcceeecccccCC-------------------CCCCCCcchh---------------------hHH------
Q psy8670         160 LARLHDLGVGAVWISPIFKSP-------------------MADFGYDISD---------------------YLR------  193 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~-------------------~~dlny~n~d---------------------~~~------  193 (224)
                      +++++++|++.+|++|++...                   .-..+|+..+                     +.+      
T Consensus       186 L~yLk~LGvt~I~L~Pi~~~~~~~e~~~~~~~~~~~~~~~~~~wGY~~~~~~a~~~~yg~~~~~~~~~~~efk~lV~~~H  265 (714)
T 2ya0_A          186 LDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIH  265 (714)
T ss_dssp             HHHHHHHTCSEEEESCCBCBSSCBGGGTTSCCCSCCSSSCSCCCSCSBSCSSSBCSTTSSCTTSTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHcCCCEEEECCcccccccCcccccccccccccCcCcCccCCCCccCcccChhhccCCCCccchHHHHHHHHHHHH
Confidence            456688999999999998620                   0014544333                     322      


Q ss_pred             ---HHHHHhhcccCCCCCcHH
Q psy8670         194 ---IKILLDFVPNHTSNQHEW  211 (224)
Q Consensus       194 ---i~ii~d~v~nh~~~~~~W  211 (224)
                         |+||||+|+||++..|.|
T Consensus       266 ~~Gi~VilDvV~NH~~~~~~~  286 (714)
T 2ya0_A          266 KRGMGAILDVVYNHTAKVDLF  286 (714)
T ss_dssp             HTTCEEEEEECTTBCSCHHHH
T ss_pred             HCCCEEEEEeccCcccCcccc
Confidence               589999999999998855

>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3

Probab=94.45  E-value=0.088  Score=45.37  Aligned_cols=65  Identities=6%  Similarity=0.135  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCC-CCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670          63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG-YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP  134 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~g-Y~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~  134 (224)
                      ..+.+.+ +.+|++|+|+|-+.- +...  .+. +.+.. -..++  ...+.+.++++.|+++||+||+|+.-
T Consensus        42 ~~~~~dl-~~~k~~G~N~vR~~~-~~~~--~w~~~~~~~-g~~~~--~~~~~ld~~i~~a~~~Gi~vil~l~~  107 (373)
T 1rh9_A           42 IKVTNTF-QQASKYKMNVARTWA-FSHG--GSRPLQSAP-GVYNE--QMFQGLDFVISEAKKYGIHLIMSLVN  107 (373)
T ss_dssp             HHHHHHH-HHHHHTTCCEEEEES-SCSS--SSSCSEEET-TEECH--HHHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred             HHHHHHH-HHHHHCCCCEEEECe-ecCC--CCccccCCC-CccCH--HHHHHHHHHHHHHHHCCCEEEEEecc
Confidence            4566677 999999999999832 2110  010 00000 00111  12567889999999999999999864

>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A

Probab=94.42  E-value=0.098  Score=45.03  Aligned_cols=48  Identities=25%  Similarity=0.311  Sum_probs=36.6

Q ss_pred             HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      .-||++|+|+|-+-. +-.+.              +...+.+.+.+++++|+++||+||+|+-
T Consensus        34 ~ilk~~G~n~vRlri-~v~P~--------------~g~~d~~~~~~~~~~ak~~Gl~v~ld~h   81 (334)
T 1fob_A           34 TILADAGINSIRQRV-WVNPS--------------DGSYDLDYNLELAKRVKAAGMSLYLDLH   81 (334)
T ss_dssp             HHHHHHTCCEEEEEE-CSCCT--------------TCTTCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             HHHHHcCCCEEEEEE-EECCC--------------CCccCHHHHHHHHHHHHHCCCEEEEEec
Confidence            778999999999832 21111              1234488999999999999999999983

>1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase, alpha-amylase FAMI acarbose, transferase; HET: ACR; 1.90A {Thermus aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A* 1fp8_A 1fp9_A 2owc_A* 2oww_A* 2owx_A* 2x1i_A*

Probab=94.37  E-value=0.05  Score=49.61  Aligned_cols=60  Identities=20%  Similarity=0.198  Sum_probs=49.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHH
Q psy8670          56 GDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFE  115 (224)
Q Consensus        56 ~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~  115 (224)
                      +-++|+|-....++++.+++.|.+.+.++|+.+....++.|++.+=+..||-|=+.+++.
T Consensus        19 ~~GIGdfgd~a~~~vd~la~~G~~~~qilPL~pt~~~~SPY~~~S~fa~NplyI~l~~l~   78 (500)
T 1esw_A           19 PYGVGVLGREARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGNPYLIDLRPLA   78 (500)
T ss_dssp             SSSSCCSSHHHHHHHHHHHHTTCCEEECCCCSCBCTTCCTTSBSCSSCCCGGGCCSHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccChhhcCHHhhh
Confidence            356899998885666999999999999999998876778999999889988886655443

>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3

Probab=94.32  E-value=0.056  Score=46.08  Aligned_cols=63  Identities=13%  Similarity=0.185  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEcCcccCCC----CCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          63 KGMIEKLPEHLHDLGVGAVWISPIFKSPM----ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~----~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      ..+.+.+ +.+|++|+|+|-+.-..+...    ...|+    ....++  ...+.+.++++.|+++||+||+|+
T Consensus        45 ~~~~~d~-~~~k~~G~N~vR~~~~~~~~~~p~~~~~g~----~~~~~~--~~~~~ld~~~~~a~~~Gi~vil~l  111 (353)
T 2c0h_A           45 STFESTL-SDMQSHGGNSVRVWLHIEGESTPEFDNNGY----VTGIDN--TLISDMRAYLHAAQRHNILIFFTL  111 (353)
T ss_dssp             HHHHHHH-HHHHHTTCCEEEEEEEETTSSSSEECTTSC----EEECCT--THHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHH-HHHHHcCCCEEEEceecCCccCccccCCCc----cccCCH--HHHHHHHHHHHHHHHcCCEEEEEc
Confidence            3455566 999999999998842222100    00111    112222  346789999999999999999998

>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3

Probab=94.32  E-value=0.037  Score=48.25  Aligned_cols=59  Identities=7%  Similarity=0.081  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          66 IEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      .+.+ +.||++|+|+|-|.--+..-      .+..-..+++.  ..+.++++|+.|+++||+||+|+-
T Consensus        64 ~~di-~~i~~~G~n~vRipv~w~~~------~~~~~~~~~~~--~l~~l~~~v~~a~~~Gi~vild~H  122 (380)
T 1edg_A           64 KQMI-DAIKQKGFNTVRIPVSWHPH------VSGSDYKISDV--WMNRVQEVVNYCIDNKMYVILNTH  122 (380)
T ss_dssp             HHHH-HHHHHHTCCEEEECCCCGGG------EETTTTEECHH--HHHHHHHHHHHHHTTTCEEEEECC
T ss_pred             HHHH-HHHHHcCCCEEEecccHHhh------cCCCCCcCCHH--HHHHHHHHHHHHHHCCCEEEEeCC
Confidence            3456 89999999999995322211      00000123332  257899999999999999999983

>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A*

Probab=94.19  E-value=0.071  Score=45.99  Aligned_cols=59  Identities=7%  Similarity=0.218  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          66 IEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      .+.+ +.|+++|+++|-|+=-+..-...     ..-..+++  +..+.++++|+.|+++||+||+|+
T Consensus        45 ~~di-~~i~~~G~n~vRipi~w~~~~~~-----~~~~~~~~--~~l~~l~~~v~~a~~~Gi~vildl  103 (345)
T 3ndz_A           45 HAMI-NKIKEAGFNTLRLPVTWDGHMGA-----APEYTIDQ--TWMKRVEEIANYAFDNDMYVIINL  103 (345)
T ss_dssp             HHHH-HHHHHHTCCEEEECCCCTTSBCC-----TTTCCBCH--HHHHHHHHHHHHHHTTTCEEEECC
T ss_pred             HHHH-HHHHHCCCCEEEEeeehHHhCCC-----CCCCccCH--HHHHHHHHHHHHHHHCCCEEEEec
Confidence            3455 89999999999985322211000     00113333  236889999999999999999998

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=94.14  E-value=0.0033  Score=59.91  Aligned_cols=57  Identities=25%  Similarity=0.600  Sum_probs=42.3

Q ss_pred             hhcccCCCcceeecccccCCC-CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhc
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLA  217 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~  217 (224)
                      ++.+++|++.+|++|++..+. ...+|+..+|+.                      |+||+|+|+||++... |.....+
T Consensus       271 ~yLk~lG~t~I~L~Pi~e~~~~~~wGY~~~~y~a~~~~yGt~~dfk~lV~~~H~~GI~VilD~V~NH~~~~~-~~~~~fd  349 (722)
T 3k1d_A          271 DYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPTSRFGTPDDFRALVDALHQAGIGVIVDWVPAHFPKDA-WALGRFD  349 (722)
T ss_dssp             HHHHHHTCSEEEESCCEECSCGGGTTCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECTTCCCCCT-TTTTTTT
T ss_pred             HHHHHcCCCeEEECCcccCCCCCCCCCCcccCcCccccCCCHHHHHHHHHHHHHcCCEEEEEEEeeccCCcc-chhhcCC
Confidence            556789999999999998753 346888777642                      5799999999998764 4333334


Q ss_pred             C
Q psy8670         218 N  218 (224)
Q Consensus       218 ~  218 (224)
                      +
T Consensus       350 g  350 (722)
T 3k1d_A          350 G  350 (722)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A*

Probab=94.08  E-value=0.06  Score=44.98  Aligned_cols=57  Identities=16%  Similarity=0.268  Sum_probs=38.5

Q ss_pred             HHHHHHHH-HcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          67 EKLPEHLH-DLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        67 ~~l~~~l~-~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      +.+ +.|+ ++|+|+|-+. +...+ ...+|.     ..+|. +..+.++++|+.|.++||+||+|+
T Consensus        42 ~di-~~~~~~~G~N~vRi~-~~~~~-~~~~~~-----~~~p~-~~~~~ld~~v~~a~~~Gi~vild~   99 (293)
T 1tvn_A           42 ETV-AKAKTEFNATLIRAA-IGHGT-STGGSL-----NFDWE-GNMSRLDTVVNAAIAEDMYVIIDF   99 (293)
T ss_dssp             HHH-HHHHHHHCCSEEEEE-EECCT-TSTTST-----TTCHH-HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHH-HHHHHhcCCCEEEEe-ccccC-CCCCcc-----ccChH-HHHHHHHHHHHHHHHCCCEEEEEc
Confidence            456 8899 5999999984 32211 112222     11321 235778899999999999999998

>1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex aeolicus} SCOP: c.1.8.1

Probab=94.04  E-value=0.059  Score=49.18  Aligned_cols=61  Identities=15%  Similarity=0.219  Sum_probs=50.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC--CCCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670          56 GDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        56 ~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~--~~~~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      +-++|+|-....++++.+++.|.+.++++|+.+..  ..++.|++.+=+..||.|=+.+++.+
T Consensus        36 ~~GIGdfgd~a~~~vd~la~~G~~~~qilPL~pt~p~~~~SPY~~~S~fa~NplyI~l~~l~e   98 (505)
T 1tz7_A           36 PYGIGDLGKEAYRFLDFLKECGFSLWQVLPLNPTSLEAGNSPYSSNSLFAGNYVLIDPEELLE   98 (505)
T ss_dssp             SSSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCCCGGGTTCTTSCSCSSSCCGGGSCTHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCcCcccccccchhhcCHhhhhh
Confidence            35689999888566699999999999999999876  55689999999999998877665543

>1x1n_A 4-alpha-glucanotransferase; disproportionating enzyme, amylomaltase, D-enzyme; 1.80A {Solanum tuberosum} SCOP: c.1.8.1

Probab=93.97  E-value=0.22  Score=45.66  Aligned_cols=61  Identities=21%  Similarity=0.192  Sum_probs=52.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC----CCCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670          56 GDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP----MADFGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        56 ~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~----~~~~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      +-++|+|-....++++.+++.|.+.++++|+.+..    ..++.|++.+=+..||.|=+.+++.+
T Consensus        40 ~~GIGdfgd~a~~fvd~la~~G~~~~qilPL~~t~~~~p~~~SPY~~~S~fa~NplyI~l~~l~e  104 (524)
T 1x1n_A           40 PYGIGDLGPQAFKFLDWLHLAGCSLWQVLPLVPPGKRGNEDGSPYSGQDANCGNTLLISLEELVD  104 (524)
T ss_dssp             TTSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCBCCSSSCTTCTTSBSCSSSCCGGGSCHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHcCCCEEeecCCCCCCCCCCCCCCCcCcccccccChhhcCHHhhhh
Confidence            46789999988666699999999999999999875    56689999999999999988877654

>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3

Probab=93.80  E-value=0.085  Score=43.95  Aligned_cols=55  Identities=16%  Similarity=0.241  Sum_probs=38.2

Q ss_pred             HHHHHHHH-HcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          67 EKLPEHLH-DLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        67 ~~l~~~l~-~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      +.+ +.++ ++|+|+|-+. +....  ..+|      ..+|. +..+.+.++++.|.++||+||+|+
T Consensus        42 ~d~-~~l~~~~G~N~vR~~-~~~~~--~~~~------~~~~~-~~~~~ld~~v~~a~~~Gi~vild~   97 (291)
T 1egz_A           42 DTV-ASLKKDWKSSIVRAA-MGVQE--SGGY------LQDPA-GNKAKVERVVDAAIANDMYAIIGW   97 (291)
T ss_dssp             HHH-HHHHHTTCCCEEEEE-EECSS--TTST------TTCHH-HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHH-HHHHHHcCCCEEEEe-ccccc--cCCC------cCCHH-HHHHHHHHHHHHHHHCCCEEEEEc
Confidence            456 8899 8999999994 32211  1122      11221 235778899999999999999998

>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A*

Probab=93.75  E-value=0.097  Score=43.98  Aligned_cols=57  Identities=12%  Similarity=0.151  Sum_probs=39.2

Q ss_pred             HHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          67 EKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        67 ~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      +.+ +.||++|+|+|-+.--+..-. ...+      +.+|+  ...+.+.++++.|+++||+||+|+
T Consensus        37 ~d~-~~l~~~G~n~vR~~i~w~~~~~~~~~------~~~~~--~~~~~~d~~v~~a~~~Gi~vild~   94 (317)
T 3aof_A           37 EFF-DIIKEAGFSHVRIPIRWSTHAYAFPP------YKIMD--RFFKRVDEVINGALKRGLAVVINI   94 (317)
T ss_dssp             HHH-HHHHHHTCSEEEECCCGGGGBCSSTT------CCBCH--HHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHH-HHHHHcCCCEEEEeccHHHhcCCCCC------CcCCH--HHHHHHHHHHHHHHHCCCEEEEEe
Confidence            345 889999999999973322110 0011      12333  236778999999999999999998

>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum}

Probab=93.75  E-value=0.094  Score=47.48  Aligned_cols=58  Identities=19%  Similarity=0.343  Sum_probs=40.2

Q ss_pred             HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      +.+ +.||++|+|+|-| |+.-..   .+|...  -..++.+ ..+.++++|+.|.++||+||||+
T Consensus        43 ~d~-~~i~~~G~N~VRi-pv~~~~---~~~~~~--~~~~~~~-~l~~ld~vv~~a~~~Gl~VIlD~  100 (491)
T 2y8k_A           43 DQI-ARVKELGFNAVHL-YAECFD---PRYPAP--GSKAPGY-AVNEIDKIVERTRELGLYLVITI  100 (491)
T ss_dssp             HHH-GGGGGGTCCEEEE-EEEECC---TTTTST--TCCCTTT-THHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHH-HHHHHcCCCEEEE-Cceeec---ccccCC--CccChhH-HHHHHHHHHHHHHHCCCEEEEEC
Confidence            445 8889999999997 553211   122110  0233322 37899999999999999999997

>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3

Probab=93.68  E-value=0.14  Score=46.06  Aligned_cols=51  Identities=14%  Similarity=0.210  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          66 IEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      .+.+ +.|+++|+|+|-+ |+...    ..|.        +  ...+.++++|+.|.++||.||+|+
T Consensus        42 ~~di-~~ik~~G~N~VRi-pv~~g----~~~~--------~--~~l~~ld~vv~~a~~~Gl~VIlDl   92 (464)
T 1wky_A           42 TTAI-EGIANTGANTVRI-VLSDG----GQWT--------K--DDIQTVRNLISLAEDNNLVAVLEV   92 (464)
T ss_dssp             HHHH-HHHHTTTCSEEEE-EECCS----SSSC--------C--CCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHH-HHHHHCCCCEEEE-EcCCC----CccC--------H--HHHHHHHHHHHHHHHCCCEEEEEe
Confidence            4456 9999999999999 44310    1111        1  357899999999999999999998

>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina}

Probab=93.48  E-value=0.071  Score=46.12  Aligned_cols=59  Identities=12%  Similarity=0.304  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHcCCCeEEEcCcccCCCC-CCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          66 IEKLPEHLHDLGVGAVWISPIFKSPMA-DFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~-~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      ++++++.++++|+++|-|+=-.+.-.. ..+      ..+++.  ..+.++++|+.|.++||+||+|+
T Consensus        45 t~~m~~~i~~~G~N~vRipi~w~~~~~~~~~------g~~~~~--~l~~ld~vV~~a~~~Gi~vIlDl  104 (340)
T 3qr3_A           45 IGQMQHFVNEDGMTIFRLPVGWQYLVNNNLG------GNLDST--SISKYDQLVQGCLSLGAYCIVDI  104 (340)
T ss_dssp             HHHHHHHHHHHCCCEEEEEECHHHHTTTCTT------CCCCHH--HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHCCCCEEEEEeeHHHhCCCCCC------CccCHH--HHHHHHHHHHHHHHCCCEEEEEe
Confidence            445548889999999999532221100 011      133332  37889999999999999999999

>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A

Probab=93.44  E-value=0.072  Score=44.91  Aligned_cols=58  Identities=14%  Similarity=0.177  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHcCCCeEEEcCcccCCCC-CCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          66 IEKLPEHLHDLGVGAVWISPIFKSPMA-DFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~-~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      .+.+ +.||++|+|+|-++=-.+.-.. ..+      ..+++  ...+-++++|+.|.++||+||+|+
T Consensus        34 ~~di-~~~~~~G~n~vRi~i~w~~~~~~~~~------~~~~~--~~l~~~~~~v~~~~~~gi~vild~   92 (305)
T 1h1n_A           34 PNTI-DTLISKGMNIFRVPFMMERLVPNSMT------GSPDP--NYLADLIATVNAITQKGAYAVVDP   92 (305)
T ss_dssp             HHHH-HHHHHTTCCEEEEEECHHHHSCSSTT------SCCCH--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHH-HHHHHCCCCEEEecccHHHcCCCCCC------CCcCH--HHHHHHHHHHHHHHHCCCEEEEec
Confidence            4456 8999999999998522221000 000      01222  235679999999999999999998

>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A*

Probab=93.20  E-value=0.12  Score=45.01  Aligned_cols=60  Identities=10%  Similarity=0.184  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHcCCCeEEEcCcccC-CCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670          66 IEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP  134 (224)
Q Consensus        66 ~~~l~~~l~~lG~~~i~l~Pi~~~-~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~  134 (224)
                      .+.+ +.||++|+|+|-|.--+.. .....+|      .+++  ...+.++++|+.|+++||+||+|+--
T Consensus        72 ~~d~-~~l~~~G~n~vRl~i~w~~~~~~~~~~------~~~~--~~l~~~d~~v~~a~~~Gi~vild~h~  132 (395)
T 2jep_A           72 PELI-KKVKAAGFKSIRIPVSYLNNIGSAPNY------TINA--AWLNRIQQVVDYAYNEGLYVIINIHG  132 (395)
T ss_dssp             HHHH-HHHHHTTCCEEEECCCCGGGBCCTTTC------CBCH--HHHHHHHHHHHHHHTTTCEEEECCCG
T ss_pred             HHHH-HHHHHcCCCEEEEeeeeccccCCCCCC------ccCH--HHHHHHHHHHHHHHHCCCEEEEECCC
Confidence            3456 8999999999998643321 1000111      2222  23577999999999999999999853

>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12

Probab=93.16  E-value=0.23  Score=43.67  Aligned_cols=61  Identities=8%  Similarity=0.152  Sum_probs=41.3

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT  137 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~  137 (224)
                      +.+...+.| +..+++||+.|+.+=..+-.      +..         -..++|++|++.||++||+||+|+.+.-.
T Consensus        39 ~~~~~~~Yi-~~a~~~Gf~~IFTSL~~~e~------~~~---------~~~~~~~~l~~~a~~~g~~vi~DVsp~~~   99 (385)
T 1x7f_A           39 TKEKDMAYI-SAAARHGFSRIFTCLLSVNR------PKE---------EIVAEFKEIINHAKDNNMEVILDVAPAVF   99 (385)
T ss_dssp             CHHHHHHHH-HHHHTTTEEEEEEEECCC-----------------------HHHHHHHHHHHHTTCEEEEEECTTCC
T ss_pred             CHHHHHHHH-HHHHHCCCCEEEccCCccCC------ChH---------HHHHHHHHHHHHHHHCCCEEEEECCHHHH
Confidence            455555556 77788999999765321111      000         12579999999999999999999987643

>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A*

Probab=93.13  E-value=0.15  Score=44.32  Aligned_cols=59  Identities=12%  Similarity=0.133  Sum_probs=38.7

Q ss_pred             HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      +.+ +.||++|+|+|-|+=-+..-     +....-..+++  ...+-++++|+.|.++||+||+|+-
T Consensus        66 ~di-~~i~~~G~N~vRipi~w~~~-----~~~~~~~~~~~--~~l~~~~~vv~~a~~~Gi~vildlH  124 (376)
T 3ayr_A           66 DMF-KVLIDNQFNVFRIPTTWSGH-----FGEAPDYKIDE--KWLKRVHEVVDYPYKNGAFVILNLH  124 (376)
T ss_dssp             HHH-HHHHHTTCCEEEECCCCTTS-----BCCTTTCCBCH--HHHHHHHHHHHHHHTTTCEEEEECC
T ss_pred             HHH-HHHHHcCCCEEEEeeEChhh-----cCCCCCCccCH--HHHHHHHHHHHHHHHCCCEEEEECC
Confidence            445 88999999999995212110     00000012222  2267799999999999999999983

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=93.11  E-value=0.0031  Score=62.70  Aligned_cols=20  Identities=25%  Similarity=0.378  Sum_probs=18.0

Q ss_pred             HHHHHhhcccCCCCCcHHHH
Q psy8670         194 IKILLDFVPNHTSNQHEWFK  213 (224)
Q Consensus       194 i~ii~d~v~nh~~~~~~W~~  213 (224)
                      |+||||+|+||++..|+|++
T Consensus       597 I~VILDvV~NHt~~~~~~~~  616 (1083)
T 2fhf_A          597 MNVIMDVVYNHTNAAGPTDR  616 (1083)
T ss_dssp             CEEEEEECTTEESCCSSSCT
T ss_pred             CEEEEEeccccCcCCCccch
Confidence            57999999999999998875

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=93.10  E-value=0.0092  Score=58.98  Aligned_cols=53  Identities=30%  Similarity=0.520  Sum_probs=36.9

Q ss_pred             chhcccCCCcceeecccccCCC-------------------CCCCCcch---------------------hhHH------
Q psy8670         160 LARLHDLGVGAVWISPIFKSPM-------------------ADFGYDIS---------------------DYLR------  193 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~~-------------------~dlny~n~---------------------d~~~------  193 (224)
                      +++++++|++.+|++|++..+.                   -..+|+..                     ||.+      
T Consensus       493 LdyLk~LGvtaV~L~Pv~~~~~~~e~~~~~~~~~y~~~~~~ynwGY~~~~y~a~~~~ygt~p~~~~~~~~efk~lV~~~H  572 (1014)
T 2ya1_A          493 LDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIH  572 (1014)
T ss_dssp             HHHHHHHTCSEEEESCCBCBSSCBGGGTTSCCCSCCSSSCSCCCSCSBSCSSSBCSTTCSCTTCTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHcCCCeEEecCcccccccccccccccccccccCcCCcccCCCcCcCccccccccCCCccccchHHHHHHHHHHHH
Confidence            4566889999999999986210                   01444433                     3322      


Q ss_pred             ---HHHHHhhcccCCCCCcHHH
Q psy8670         194 ---IKILLDFVPNHTSNQHEWF  212 (224)
Q Consensus       194 ---i~ii~d~v~nh~~~~~~W~  212 (224)
                         |+||||+|+||++..|.|-
T Consensus       573 ~~GI~VIlDvV~NHt~~~~~~~  594 (1014)
T 2ya1_A          573 KRGMGAILDVVYNHTAKVDLFE  594 (1014)
T ss_dssp             TTTCEEEEEECTTCCSCHHHHH
T ss_pred             HcCCEEEEEEeccccccccccc
Confidence               5899999999999987653

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=93.05  E-value=0.011  Score=57.57  Aligned_cols=20  Identities=30%  Similarity=0.431  Sum_probs=17.7

Q ss_pred             HHHHHhhcccCCCCCcHHHH
Q psy8670         194 IKILLDFVPNHTSNQHEWFK  213 (224)
Q Consensus       194 i~ii~d~v~nh~~~~~~W~~  213 (224)
                      |+||||+|+||++..|+|..
T Consensus       384 I~VILDvV~NH~a~~~~~~~  403 (877)
T 3faw_A          384 MGVILDVVYNHTAKTYLFED  403 (877)
T ss_dssp             CEEEEEECTTCCSCTHHHHT
T ss_pred             CEEEEEEeeccccCcccccc
Confidence            58999999999999988754

>4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila}

Probab=92.79  E-value=0.46  Score=39.41  Aligned_cols=74  Identities=14%  Similarity=0.145  Sum_probs=43.4

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCC--CCCCCCc--------cCCCCc----CCCC--CCHHHHHHHHHHHHHc
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPM--ADFGYDI--------SDYLSF----EPLF--GDLKDFETLKERLHAL  124 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~--~~~gY~~--------~d~~~v----~~~~--G~~~~~~~lv~~~h~~  124 (224)
                      +-..+.+.| +.+|++|+|+|-+-...+...  ....|..        ......    .+.+  ...+.+.+++++|.++
T Consensus        35 ~~~~~~~~l-~~~~~~G~N~iR~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~~  113 (387)
T 4awe_A           35 DQPDIEKGM-TAARAAGLTVFRTWGFNDKNRTYIPTGLPQYGNEGAGDPTNTVFQWFEADGTQTIDVSPFDKVVDSATKT  113 (387)
T ss_dssp             CHHHHHHHH-HHHHHTTCCEEEEECCCEEESSCCTTCSSCCCCCTTCCTTCCCSEEECTTSCEEECCGGGHHHHHHHHHH
T ss_pred             CHHHHHHHH-HHHHhCCCCEEEeCcccCCCccCccccchhhhccccccccchhhhhcccCccchhhhhhHHHHHHHHHHc
Confidence            446677777 999999999999843221100  0011111        110000    0001  1134578899999999


Q ss_pred             CCEEEEecCCC
Q psy8670         125 GIKILLDFVPN  135 (224)
Q Consensus       125 gi~vilD~v~n  135 (224)
                      ||+||+++..+
T Consensus       114 gi~v~~~~~~~  124 (387)
T 4awe_A          114 GIKLIVALTNN  124 (387)
T ss_dssp             TCEEEEECCBS
T ss_pred             CCEEEEeeccc
Confidence            99999999654

>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*

Probab=92.58  E-value=0.2  Score=43.35  Aligned_cols=55  Identities=13%  Similarity=0.179  Sum_probs=39.7

Q ss_pred             HHHHHHHH-HcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670          67 EKLPEHLH-DLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP  134 (224)
Q Consensus        67 ~~l~~~l~-~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~  134 (224)
                      +.+ +.|+ ++|+|+|-+. +.- .  ..+      +.++|.+  .+.++++|+.|.++||+||+|+--
T Consensus        57 ~d~-~~l~~~~G~N~VRip-~~~-~--~~~------~~~~~~~--l~~ld~~v~~a~~~Gi~VIld~H~  112 (364)
T 1g01_A           57 NAF-VALSNDWGSNMIRLA-MYI-G--ENG------YATNPEV--KDLVYEGIELAFEHDMYVIVDWHV  112 (364)
T ss_dssp             HHH-HHHHTTSCCSEEEEE-EES-S--SSS------TTTCTTH--HHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             HHH-HHHHHHCCCCEEEEE-eee-C--CCC------CccCHHH--HHHHHHHHHHHHHCCCEEEEEecc
Confidence            345 8886 8999999985 321 1  112      2345543  688999999999999999999953

>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*

Probab=92.45  E-value=1.3  Score=42.08  Aligned_cols=113  Identities=12%  Similarity=0.114  Sum_probs=71.8

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCC-CCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPL-FGDLKDFETLKERLHALGIKILLDFVPNHTSN  139 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~-~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~  139 (224)
                      +-+.+.+.+ +.++++|+..+.|==-+.....++--...|+ .+|+. |-  +.|+.|++.+|++||+.-+=+-+--++.
T Consensus       344 ~e~~i~~~a-d~aa~lG~e~fviDDGWf~~r~~d~~~lGdW-~~d~~kFP--~Glk~Lad~vh~~GmkfGLW~epe~v~~  419 (729)
T 4fnq_A          344 NEEKLVNIA-KTEAELGIELFVLDDGWFGKRDDDRRSLGDW-IVNRRKLP--NGLDGLAKQVNELGMQFGLWVEPEMVSP  419 (729)
T ss_dssp             CHHHHHHHH-HHHHHHTCCEEEECSCCBTTCCSTTSCTTCC-SBCTTTCT--THHHHHHHHHHHTTCEEEEEECTTEECS
T ss_pred             CHHHHHHHH-HHHHhcCccEEEEcceeecCCCCCcccCCcE-EEChhhcC--ccHHHHHHHHHHCCCEEEEEeeccccCC
Confidence            445666667 9999999999866432222211111122233 34432 43  4799999999999999998888877888


Q ss_pred             cchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         140 QHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       140 ~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      ++++++       +++||.+-...   +.      +..+..+--+++.+|++++
T Consensus       420 ~S~l~~-------~hPdw~~~~~~---~~------~~~~r~q~~LD~~~P~v~~  457 (729)
T 4fnq_A          420 NSELYR-------KHPDWCLHVPN---RP------RSEGRNQLVLDYSREDVCD  457 (729)
T ss_dssp             SSHHHH-------HCGGGBCCCTT---SC------CCCBTTBEEBCTTSHHHHH
T ss_pred             CcHHHH-------hCchheeccCc---cC------CccCCccccccCCChhHHH
Confidence            999998       77888752211   11      1112223347788888765

>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A*

Probab=92.41  E-value=0.59  Score=43.11  Aligned_cols=50  Identities=28%  Similarity=0.415  Sum_probs=37.1

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      +-+.+.+.+ ..+|++|+|+|-+-                  .++|.-+.    .+++++|++.||.||+|+-
T Consensus        85 ~~e~~~rDi-~LmK~~GiN~VRvy------------------~~~P~~~~----d~~ldl~~~~GIyVIle~~  134 (555)
T 2w61_A           85 DPKICLRDI-PFLKMLGVNTLRVY------------------AIDPTKSH----DICMEALSAEGMYVLLDLS  134 (555)
T ss_dssp             CHHHHHHHH-HHHHHHTCSEEEEC------------------CCCTTSCC----HHHHHHHHHTTCEEEEESC
T ss_pred             CHHHHHHHH-HHHHHcCCCEEEEe------------------ccCCCCCh----HHHHHHHHhcCCEEEEeCC
Confidence            345666777 99999999999882                  22232222    4778889999999999974

>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A*

Probab=92.27  E-value=0.15  Score=42.82  Aligned_cols=54  Identities=20%  Similarity=0.414  Sum_probs=38.0

Q ss_pred             HHHHHHHH-HcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          67 EKLPEHLH-DLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        67 ~~l~~~l~-~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      +.+ +.|+ ++|+|+|-+ |+...   ..||      .++|. +-.+.++++|+.|.++||+||+|+
T Consensus        46 ~d~-~~l~~~~G~N~vRi-~~~~~---~~~~------~~~~~-~~l~~ld~~v~~a~~~Gl~vild~  100 (306)
T 2cks_A           46 SSL-DALAYDWKADIIRL-SMYIQ---EDGY------ETNPR-GFTDRMHQLIDMATARGLYVIVDW  100 (306)
T ss_dssp             HHH-HHHHHTSCCSEEEE-EEESS---TTSG------GGCHH-HHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             HHH-HHHHHHcCCCEEEE-Eeeec---CCCc------ccCHH-HHHHHHHHHHHHHHHCCCEEEEEe
Confidence            446 7786 599999999 44321   1222      33432 125788999999999999999998

>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A

Probab=92.20  E-value=0.23  Score=41.74  Aligned_cols=53  Identities=23%  Similarity=0.369  Sum_probs=38.5

Q ss_pred             HHHHHHHH-HcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          67 EKLPEHLH-DLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        67 ~~l~~~l~-~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      +.+ +.|+ ++|+|+|-+.= ...   ..||      ..+|.  -.+.+.++|+.|.++||.||+|+
T Consensus        47 ~~~-~~l~~~~G~N~VRip~-~~~---~~~~------~~~~~--~~~~ld~~v~~a~~~Gi~Vild~  100 (303)
T 7a3h_A           47 ESM-KWLRDDWGINVFRAAM-YTS---SGGY------IDDPS--VKEKVKEAVEAAIDLDIYVIIDW  100 (303)
T ss_dssp             HHH-HHHHHHTCCCEEEEEE-ESS---TTST------TTCTT--HHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHH-HHHHHhcCCCEEEEEE-EeC---CCCc------cCCHH--HHHHHHHHHHHHHHCCCEEEEEe
Confidence            345 7887 79999999852 211   1222      22443  37889999999999999999999

>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*

Probab=91.82  E-value=0.59  Score=44.04  Aligned_cols=58  Identities=16%  Similarity=0.145  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHcCCCeEEEcCc-ccC-CCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          62 LKGMIEKLPEHLHDLGVGAVWISPI-FKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        62 l~~~~~~l~~~l~~lG~~~i~l~Pi-~~~-~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      -..+.+.+ ..+|++|+|+|-+..+ +.. ... .|  ..||          +.+.+++++|+++||+||+.+.
T Consensus        22 ~~~~~~Dl-~~mk~~G~n~vr~~if~W~~~eP~-~g--~~~f----------~~ld~~i~~~~~~Gi~vil~~~   81 (675)
T 3tty_A           22 KATMEEDM-RMFNLAGIDVATVNVFSWAKIQRD-EV--SYDF----------TWLDDIIERLTKENIYLCLATS   81 (675)
T ss_dssp             HHHHHHHH-HHHHHHTCCEEEECSSCHHHHBSS-SS--CBCC----------HHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHH-HHHHHcCCCEEEEeeechhhhCCc-CC--ccCH----------HHHHHHHHHHHHCCCEEEEeCC
Confidence            35577788 9999999999998541 111 001 11  1222          6899999999999999999874

>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*

Probab=91.65  E-value=0.29  Score=45.76  Aligned_cols=67  Identities=18%  Similarity=0.272  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEcCc-ccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccc
Q psy8670          63 KGMIEKLPEHLHDLGVGAVWISPI-FKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQH  141 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG~~~i~l~Pi-~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~  141 (224)
                      ..+.+.+ +.+|++|+|+|-+.-+ +..-...-|  ..|          .+.+.++++.|+++||+||+++.   +..-.
T Consensus        14 ~~~~~dl-~~mk~~G~N~vR~~if~W~~~eP~~g--~~d----------~~~ld~~ld~a~~~Gi~vil~~~---~~~~P   77 (645)
T 1kwg_A           14 ERWKEDA-RRMREAGLSHVRIGEFAWALLEPEPG--RLE----------WGWLDEAIATLAAEGLKVVLGTP---TATPP   77 (645)
T ss_dssp             HHHHHHH-HHHHHHTCCEEEECTTCHHHHCSBTT--BCC----------CHHHHHHHHHHHTTTCEEEEECS---TTSCC
T ss_pred             HHHHHHH-HHHHHcCCCEEEEeeechhhcCCCCC--ccC----------hHHHHHHHHHHHHCCCEEEEeCC---CCCCC
Confidence            5567778 9999999999998421 111000011  112          35789999999999999999972   33344


Q ss_pred             hhHH
Q psy8670         142 EWFK  145 (224)
Q Consensus       142 ~w~~  145 (224)
                      .|+.
T Consensus        78 ~Wl~   81 (645)
T 1kwg_A           78 KWLV   81 (645)
T ss_dssp             HHHH
T ss_pred             hhHh
Confidence            5654

>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A*

Probab=91.59  E-value=0.11  Score=46.67  Aligned_cols=54  Identities=20%  Similarity=0.238  Sum_probs=36.3

Q ss_pred             HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      +.||++|+|+|-+.-.+..-...-|       .+|  ....+.++++++.|+++||+||+|+-
T Consensus        73 ~~l~~~G~N~VRl~v~w~~~~p~~g-------~~~--~~~l~~l~~~v~~a~~~Gi~vildlH  126 (481)
T 2osx_A           73 REYADMGTNFVRFLISWRSVEPAPG-------VYD--QQYLDRVEDRVGWYAERGYKVMLDMH  126 (481)
T ss_dssp             HHHHHHCCCEEEEEECHHHHCSBTT-------BCC--HHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             HHHHHCCCCEEEEeCcHHHcCCCCC-------CcC--HHHHHHHHHHHHHHHHCCCEEEEEcc
Confidence            6789999999998532221000011       111  12357788899999999999999974

>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}

Probab=91.31  E-value=0.11  Score=28.55  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=19.5

Q ss_pred             CCHHHHHHHHHHHHHcCCEEE
Q psy8670         109 GDLKDFETLKERLHALGIKIL  129 (224)
Q Consensus       109 G~~~~~~~lv~~~h~~gi~vi  129 (224)
                      |++++++.|-++|++.+|||-
T Consensus        12 gtpeelkklkeeakkanirvt   32 (36)
T 2ki0_A           12 GTPEELKKLKEEAKKANIRVT   32 (36)
T ss_dssp             CCHHHHHHHHHHHHHHCCCCC
T ss_pred             CCHHHHHHHHHHHHhccEEEE
Confidence            899999999999999999873

>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel, glyco_hydro_42; HET: MSE; 1.80A {Caulobacter crescentus}

Probab=91.05  E-value=0.37  Score=44.33  Aligned_cols=58  Identities=12%  Similarity=0.117  Sum_probs=39.7

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLD  131 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD  131 (224)
                      ..+-..+.+ +.+|++|+|+|.+.=.+..-....  ...||          +.+.++++.|+++||+||+-
T Consensus        71 y~r~~~~~W-~~mKa~G~NtVr~~V~W~~hEP~~--G~yDF----------~~LD~~ldla~e~GL~VIL~  128 (552)
T 3u7v_A           71 WPSQMAKVW-PAIEKVGANTVQVPIAWEQIEPVE--GQFDF----------SYLDLLLEQARERKVRLVLL  128 (552)
T ss_dssp             SGGGHHHHH-HHHHHHTCSEEEEEEEHHHHCSBT--TBCCC----------HHHHHHHHHHHHTTCEEEEE
T ss_pred             chhhhHHHH-HHHHHhCCCEEEEEehhhccCCCC--CccCh----------hhHHHHHHHHHHCCCEEEEE
Confidence            456666777 899999999998862111100001  12333          35889999999999999996

>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}

Probab=90.88  E-value=0.33  Score=42.50  Aligned_cols=59  Identities=19%  Similarity=0.193  Sum_probs=40.6

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPN  135 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~n  135 (224)
                      +.+...+.| +..+++||+.|+.+=..+-.      +..         -..++|++|++.||++||+||+|+.+.
T Consensus        15 ~~~~~~~yi-~~a~~~Gf~~IFTSL~~~e~------~~~---------~~~~~~~~l~~~a~~~g~~vi~DIsp~   73 (372)
T 2p0o_A           15 ITNDTIIYI-KKMKALGFDGIFTSLHIPED------DTS---------LYRQRLTDLGAIAKAEKMKIMVDISGE   73 (372)
T ss_dssp             CCHHHHHHH-HHHHHTTCCEEEEEECCC--------------------CHHHHHHHHHHHHHHHTCEEEEEECHH
T ss_pred             CHHHHHHHH-HHHHHCCCCEEEccCCccCC------ChH---------HHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence            344555566 77888999999765321111      011         125799999999999999999999753

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=88.72  E-value=0.97  Score=41.26  Aligned_cols=75  Identities=13%  Similarity=0.139  Sum_probs=49.7

Q ss_pred             eEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHH
Q psy8670          42 VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERL  121 (224)
Q Consensus        42 viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~  121 (224)
                      .+|-+.|..-.++    ......+.+.+ ..+|++|+|+|.+.=.+..-.. .|-...|          .+.+.++++.|
T Consensus        12 ~~~vmlp~~~v~~----~~~~~~w~~dl-~~mk~~Gln~Vr~~V~W~~iEP-~g~G~yd----------f~~~d~~id~a   75 (516)
T 1vem_A           12 KAYLMAPLKKIPE----VTNWETFENDL-RWAKQNGFYAITVDFWWGDMEK-NGDQQFD----------FSYAQRFAQSV   75 (516)
T ss_dssp             EEEEECCSSCGGG----TSCHHHHHHHH-HHHHHTTEEEEEEEEEHHHHTC-SSTTCCC----------CHHHHHHHHHH
T ss_pred             CeEEEecccccCC----CCCHHHHHHHH-HHHHHcCCCEEEEecchhhccC-CCCCccc----------hHHHHHHHHHH
Confidence            4555555433222    35778899999 9999999999988543322100 0001223          25678999999


Q ss_pred             HHcCCEEE--Eec
Q psy8670         122 HALGIKIL--LDF  132 (224)
Q Consensus       122 h~~gi~vi--lD~  132 (224)
                      +++||+|+  +++
T Consensus        76 ~~~GL~viv~L~~   88 (516)
T 1vem_A           76 KNAGMKMIPIIST   88 (516)
T ss_dssp             HHTTCEEEEEEEC
T ss_pred             HHCCCEEEEEecc
Confidence            99999999  887

>4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A*

Probab=88.66  E-value=0.13  Score=44.47  Aligned_cols=54  Identities=19%  Similarity=0.303  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          66 IEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      .+.+ +.||++|+|+|-+. +....     +...    .++  ...+.+.++|+.|.++||.||+|+
T Consensus        88 ~~di-~~ik~~G~N~VRi~-~~~~~-----~~~~----~~~--~~l~~ld~~v~~a~~~Gi~Vild~  141 (359)
T 4hty_A           88 KKHF-EVIRSWGANVVRVP-VHPRA-----WKER----GVK--GYLELLDQVVAWNNELGIYTILDW  141 (359)
T ss_dssp             HHHH-HHHHHTTCSEEEEE-ECHHH-----HHHH----HHH--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHH-HHHHhcCCCEEEEe-ccHHH-----hhcc----CCH--HHHHHHHHHHHHHHHCCCEEEEEc
Confidence            3456 89999999999985 32211     0000    001  125678999999999999999998

>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*

Probab=88.52  E-value=1.4  Score=40.03  Aligned_cols=75  Identities=17%  Similarity=0.252  Sum_probs=52.4

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcC-------CCCCCHHHHHHHHHHHHHcCCEEEEec-
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFE-------PLFGDLKDFETLKERLHALGIKILLDF-  132 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~-------~~~G~~~~~~~lv~~~h~~gi~vilD~-  132 (224)
                      +.+.+.+.+ +.++..+.|.+++-..   ...+|.|.+..|-.+-       ..+=|.+|++++++-|+++||+||-.+ 
T Consensus       166 ~~~~ik~~i-d~ma~~KlN~lh~Hlt---Ddq~wr~e~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID  241 (507)
T 1now_A          166 PVKIILKTL-DAMAFNKFNVLHWHIV---DDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFD  241 (507)
T ss_dssp             CHHHHHHHH-HHHHHTTCCEEEEECC---CSSCCCBCCSSCHHHHHHHSSSTTSCBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CHHHHHHHH-HHHHHhCCcEEEEeec---cCccceeeccchhhhhcccCcCCCCCCCHHHHHHHHHHHHHcCCEEEEccC
Confidence            567777777 9999999999987432   1122444443332221       223378999999999999999999766 


Q ss_pred             CCCCCCc
Q psy8670         133 VPNHTSN  139 (224)
Q Consensus       133 v~nh~~~  139 (224)
                      .+.|+..
T Consensus       242 ~PGH~~a  248 (507)
T 1now_A          242 TPGHTLS  248 (507)
T ss_dssp             ESSSCTT
T ss_pred             CchhHHH
Confidence            4889873

>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*

Probab=88.35  E-value=2.2  Score=38.85  Aligned_cols=75  Identities=17%  Similarity=0.298  Sum_probs=51.8

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcC--------CCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFE--------PLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~--------~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      +.+.+.+.+ +.++..++|.+++--.   ...+|.|.+..|-.+-        ..+=|.+|++++++-|+++||+||-.+
T Consensus       160 ~~~~ik~~i-d~mA~~KlN~lh~Hlt---Ddq~wr~ei~~~P~Lt~~Ga~~~~~~~YT~~di~eiv~yA~~rgI~VIPEI  235 (507)
T 2gjx_A          160 PLSSILDTL-DVMAYNKLNVFHWHLV---DDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEF  235 (507)
T ss_dssp             CHHHHHHHH-HHHHHTTCCEEEEECC---CSSCCCBCCSSCTHHHHHHSSCTTTSCBCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CHHHHHHHH-HHHHHhCCceEEEEEe---cccCeeeeccccchhhhccccCCCCCCcCHHHHHHHHHHHHHcCCEEEECC
Confidence            467777767 9999999999987321   1112334433332221        123378999999999999999999877


Q ss_pred             -CCCCCCc
Q psy8670         133 -VPNHTSN  139 (224)
Q Consensus       133 -v~nh~~~  139 (224)
                       .|.|+..
T Consensus       236 D~PGH~~a  243 (507)
T 2gjx_A          236 DTPGHTLS  243 (507)
T ss_dssp             CCSSSCTT
T ss_pred             CCcchHHH
Confidence             4888874

>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482}

Probab=88.06  E-value=0.65  Score=43.33  Aligned_cols=62  Identities=13%  Similarity=0.180  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          62 LKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        62 l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      -+.+.+.+ ..+|++|+|+|.+.=.+..-....|  ..|       |...+++.++++.|+++||+||+..-
T Consensus        36 ~e~w~~dl-~~mK~~G~N~Vrt~v~W~~hEP~~G--~yd-------f~gl~~l~~fl~la~e~GL~VIl~~g   97 (612)
T 3d3a_A           36 KEYWEHRI-KMCKALGMNTICLYVFWNFHEPEEG--RYD-------FAGQKDIAAFCRLAQENGMYVIVRPG   97 (612)
T ss_dssp             GGGHHHHH-HHHHHHTCCEEEEECCHHHHCSSTT--CCC-------CSGGGCHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHH-HHHHHcCCCEEEEcChHHhcCCCCC--ccC-------hhHHHHHHHHHHHHHHCCCEEEEecC
Confidence            35677788 9999999999998633322111111  123       34567899999999999999999864

>3gyc_A Putative glycoside hydrolase; YP_001304622.1, structural GEN joint center for structural genomics, JCSG; HET: MSE; 1.85A {Parabacteroides distasonis atcc 8503}

Probab=88.05  E-value=0.95  Score=38.79  Aligned_cols=69  Identities=17%  Similarity=0.231  Sum_probs=44.8

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEc--Cc--ccCCCCCCC----CCccCCCCcCCCCC----CHHHHHHHHHHHHHcCC
Q psy8670          59 VGDLKGMIEKLPEHLHDLGVGAVWIS--PI--FKSPMADFG----YDISDYLSFEPLFG----DLKDFETLKERLHALGI  126 (224)
Q Consensus        59 ~g~l~~~~~~l~~~l~~lG~~~i~l~--Pi--~~~~~~~~g----Y~~~d~~~v~~~~G----~~~~~~~lv~~~h~~gi  126 (224)
                      ++.|.++...+ +.+++.|+|+|-+-  |.  |.++..-+-    |.-.++   +..=|    ....|.+|.++||++|+
T Consensus        33 Gepf~DLD~af-dEavERGYNTVRIcAmP~LLf~~p~~l~~l~pl~gQrrW---~~pg~~evdgr~~L~elf~aAk~hd~  108 (393)
T 3gyc_A           33 GAGYEDWDQVL-DELSERGYNAIRIDAYPHLIAENPMKKWLLKEVWNQQDW---GSPDMNEVQVQPNLNLFLSKCKERDI  108 (393)
T ss_dssp             TSSCSCHHHHH-HHHHHTTCCEEEEECCHHHHHHCTTCCEEECCSCSSSSS---SCSSCEEECCTTHHHHHHHHHHHTTC
T ss_pred             CCChhHHHHHH-HHHHHcCCCeEEeccccceeecCCcchhhcccccccccc---CCCCCceechHHHHHHHHHHHHHcCC
Confidence            45677777788 89999999999884  42  333221100    111122   11111    24689999999999999


Q ss_pred             EEEEe
Q psy8670         127 KILLD  131 (224)
Q Consensus       127 ~vilD  131 (224)
                      +|++-
T Consensus       109 ~ViLS  113 (393)
T 3gyc_A          109 KVGLS  113 (393)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99983

>4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron}

Probab=87.86  E-value=1.2  Score=38.48  Aligned_cols=86  Identities=8%  Similarity=0.045  Sum_probs=52.9

Q ss_pred             EEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCC--ccCCCCcCCC-C-CCHHHHHHHH
Q psy8670          43 FYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYD--ISDYLSFEPL-F-GDLKDFETLK  118 (224)
Q Consensus        43 iY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~--~~d~~~v~~~-~-G~~~~~~~lv  118 (224)
                      |=-.|.+-+...-+..--+-+.+.+.+ .++|++|++.|.|.-..-     .|+.  ++-+ ..++. + ...+-++.++
T Consensus        34 itgtfld~~~~d~~~qnWd~~eW~~~~-~~mK~~GikyvIl~~~~~-----~gf~~~pS~~-~~~~~~~~p~~Dlv~~~l  106 (340)
T 4h41_A           34 ITGTFLDEISHDIPHQNWGEKEWDLDF-QHMKRIGIDTVIMIRSGY-----RKFMTYPSPY-LLKKGCYMPSVDLVDMYL  106 (340)
T ss_dssp             EEEEEECTTCSSSCCCCCCHHHHHHHH-HHHHHTTCCEEEESCSEE-----TTEESSCCHH-HHHTTCCCCSBCHHHHHH
T ss_pred             ceEEEehhhcCCCcccCCCHHHHHHHH-HHHHHcCCCEEEEEEEee-----CCeeccCccc-ccccCccCCcccHHHHHH
Confidence            434444444433333345678898888 999999999998764322     1211  1111 01111 1 1245688999


Q ss_pred             HHHHHcCCEEEEecCCC
Q psy8670         119 ERLHALGIKILLDFVPN  135 (224)
Q Consensus       119 ~~~h~~gi~vilD~v~n  135 (224)
                      ++|+++||+|.+-+-.+
T Consensus       107 ~aa~k~Gmkv~~Gly~S  123 (340)
T 4h41_A          107 RLAEKYNMKFYFGLYDS  123 (340)
T ss_dssp             HHHHHTTCEEEEECCBC
T ss_pred             HHHHHhCCeEEEecCCC
Confidence            99999999999987544

>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase; HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1 b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A* 1we5_A*

Probab=87.47  E-value=2.1  Score=40.98  Aligned_cols=75  Identities=19%  Similarity=0.328  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHcCC--CeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670          63 KGMIEKLPEHLHDLGV--GAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHTSN  139 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG~--~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~  139 (224)
                      +.+.+-+ +.+++.|+  +.+++=--+..     +|.-.|| ..|+ +|-++   ++|++++|++|+++++=+-+ +++.
T Consensus       284 ~~v~~v~-~~~r~~~IP~dvi~lD~~w~~-----~~~w~df-t~d~~~FPdp---~~mv~~Lh~~G~k~~l~i~P-~I~~  352 (773)
T 2f2h_A          284 ATVNSFI-DGMAERNLPLHVFHFDCFWMK-----AFQWCDF-EWDPLTFPDP---EGMIRRLKAKGLKICVWINP-YIGQ  352 (773)
T ss_dssp             HHHHHHH-HHHHHTTCCCCEEEECGGGBC-----TTCCSSC-CBCTTTCSCH---HHHHHHHHHTTCEEEEEECS-EECT
T ss_pred             HHHHHHH-HHHHHcCCCeeEEEECccccc-----ccccccc-eEChhhCCCH---HHHHHHHHHCCCEEEEEecC-CcCC
Confidence            4555555 77788776  88877443321     1222244 6665 46654   68999999999999887766 6777


Q ss_pred             cchhHHhhh
Q psy8670         140 QHEWFKKSL  148 (224)
Q Consensus       140 ~~~w~~~~~  148 (224)
                      +++.|++..
T Consensus       353 ~s~~y~e~~  361 (773)
T 2f2h_A          353 KSPVFKELQ  361 (773)
T ss_dssp             TSTTHHHHH
T ss_pred             CCHHHHHHH
Confidence            777777554

>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}

Probab=87.17  E-value=0.86  Score=34.93  Aligned_cols=64  Identities=17%  Similarity=0.177  Sum_probs=38.8

Q ss_pred             CHHHHHHHHHHHHHHc-CC-CeEEEcCcccCCCCCC-----CCCccCCCCcCCCCCCHHH--HHHHHHHHHHcCCEEEE
Q psy8670          61 DLKGMIEKLPEHLHDL-GV-GAVWISPIFKSPMADF-----GYDISDYLSFEPLFGDLKD--FETLKERLHALGIKILL  130 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~l-G~-~~i~l~Pi~~~~~~~~-----gY~~~d~~~v~~~~G~~~~--~~~lv~~~h~~gi~vil  130 (224)
                      +...+.+-+ +.++++ |+ ..+.+.|..+.+...+     .|...+.     .--+.++  +.++.+.++++|+++.+
T Consensus       108 n~~~~~~~~-~~~~~~~g~~~~~~l~~~~p~g~~~~~~l~~~y~~~~~-----~~~~~e~~~l~~~~~~~~~~g~~~~i  180 (182)
T 3can_A          108 DEKNIKLSA-EFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNPKGY-----KMQTPSEEVQQQCIQILTDYGLKATI  180 (182)
T ss_dssp             SHHHHHHHH-HHHHHSSSCCSEEEEEECCC-----------------------CCBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CHHHHHHHH-HHHHhCcCccceEEEecCcccCHHHHHHhCCcCcccCC-----CCCCHHHHHHHHHHHHHHHcCCceEe
Confidence            345565555 888999 99 8999998887653221     1221111     1123355  99999999999999875

>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*

Probab=86.61  E-value=2.1  Score=39.03  Aligned_cols=75  Identities=5%  Similarity=0.157  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCc---------C---CCCCCHHHHHHHHHHHHHcCCEE
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSF---------E---PLFGDLKDFETLKERLHALGIKI  128 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v---------~---~~~G~~~~~~~lv~~~h~~gi~v  128 (224)
                      +.+.+.+.| +.++..+.|.+++-..   ...+|.+.+..|-.+         .   ..+=|.+|++++++-|+++||+|
T Consensus       172 ~~~~ik~~i-d~ma~~KlN~lh~Hlt---Ddq~wriei~~~P~Lt~~ga~~~~~~~~~g~YT~~di~eiv~yA~~rgI~V  247 (512)
T 1jak_A          172 GVDEVKRYI-DRVARYKYNKLHLHLS---DDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEV  247 (512)
T ss_dssp             CHHHHHHHH-HHHHTTTCCEEEEECB---CSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHHHHTTCEE
T ss_pred             CHHHHHHHH-HHHHHcCCcEEEEEec---cCCCceehhhhhHHHHhhcCccccCCCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            567777777 9999999999987532   111233333322211         1   12237899999999999999999


Q ss_pred             EEec-CCCCCCc
Q psy8670         129 LLDF-VPNHTSN  139 (224)
Q Consensus       129 ilD~-v~nh~~~  139 (224)
                      |-.+ ++.|+..
T Consensus       248 IPEID~PGH~~a  259 (512)
T 1jak_A          248 VPEIDMPGHTNA  259 (512)
T ss_dssp             EEECCCSSSCHH
T ss_pred             EEccCCCchHHH
Confidence            9876 5788754

>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A

Probab=86.48  E-value=0.62  Score=43.27  Aligned_cols=59  Identities=15%  Similarity=0.129  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q psy8670          63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLD  131 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD  131 (224)
                      +-+.+.+ ..+|++|+|+|.+-=.+..-....  ...||       ....|+.++++.|+++||.||+=
T Consensus        32 ~~W~d~l-~kmKa~G~NtV~~yv~W~~hEP~~--G~fdF-------~g~~dL~~fl~~a~~~Gl~Vilr   90 (595)
T 4e8d_A           32 EDWYHSL-YNLKALGFNTVETYVAWNLHEPCE--GEFHF-------EGDLDLEKFLQIAQDLGLYAIVR   90 (595)
T ss_dssp             GGHHHHH-HHHHHTTCCEEEEECCHHHHCSBT--TBCCC-------SGGGCHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHH-HHHHHcCCCEEEEeccHHHcCCCC--Ceecc-------cchhhHHHHHHHHHHcCCEEEEe
Confidence            4567778 999999999999832222210111  13333       33468999999999999999997

>2o9p_A Beta-glucosidase B; family 1 glycoside hydrolase; 2.10A {Paenibacillus polymyxa} PDB: 2o9t_A* 2z1s_A* 2jie_A* 2o9r_A*

Probab=86.33  E-value=1  Score=40.43  Aligned_cols=59  Identities=19%  Similarity=0.269  Sum_probs=43.6

Q ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCC-----HHHHHHHHHHHHHcCCEEEEecC
Q psy8670          60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGD-----LKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~-----~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      ..+....+.+ +-++++|++++-++=-++              .|.|.-|.     .+-+.+|+++|+++||++++++.
T Consensus        64 D~Y~~~~eDi-~lm~~~G~~~~R~sisWs--------------Ri~P~~g~~n~~Gl~~y~~lid~l~~~GI~p~vtL~  127 (454)
T 2o9p_A           64 DHFHHFKEDV-QLMKQLGFLHYRFSVAWP--------------RIMPAAGIINEEGLLFYEHLLDEIELAGLIPMLTLY  127 (454)
T ss_dssp             CHHHHHHHHH-HHHHTTTCCEEEEECCHH--------------HHCSSTTCCCHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             chHHHHHHHH-HHHHhcCCceEEecccHH--------------hhCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence            3456677778 999999999999874332              22222222     35589999999999999999984

>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A*

Probab=86.04  E-value=0.67  Score=43.50  Aligned_cols=58  Identities=16%  Similarity=0.114  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEcCcc-cC-CCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          63 KGMIEKLPEHLHDLGVGAVWISPIF-KS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG~~~i~l~Pi~-~~-~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      +-+.+.+ ..+|++|+|+|.+ .++ .. ... .  ...||       ....|+.++++.|+++||.||+..
T Consensus        40 ~~W~d~l-~kmKa~G~NtV~~-yv~W~~hEP~-~--G~fdF-------~g~~DL~~fl~~a~~~GL~ViLr~   99 (654)
T 3thd_A           40 FYWKDRL-LKMKMAGLNAIQT-YVPWNFHEPW-P--GQYQF-------SEDHDVEYFLRLAHELGLLVILRP   99 (654)
T ss_dssp             GGHHHHH-HHHHHTTCSEEEE-ECCHHHHCSB-T--TBCCC-------SGGGCHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHH-HHHHHcCCCEEEE-EechhhcCCC-C--CccCc-------cchHHHHHHHHHHHHcCCEEEecc
Confidence            4577778 8999999999999 432 11 111 1  12333       345689999999999999999986

>1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken structural genomics/PR initiative, RSGI, structural genomics, hydrolase; 0.99A {Thermus thermophilus} SCOP: c.1.8.4 PDB: 1np2_A

Probab=85.73  E-value=1.6  Score=38.80  Aligned_cols=64  Identities=25%  Similarity=0.358  Sum_probs=43.4

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      -+....+.+ +.++++|++++-++--++.-.. .|-.     .+|+  -..+-+.+++++|+++||++++++.
T Consensus        55 ~Y~~~~eDi-~lm~~~G~~~~R~si~W~Ri~P-~g~g-----~~n~--~gl~~y~~~id~l~~~GI~p~vtL~  118 (431)
T 1ug6_A           55 HYRRYEEDI-ALMQSLGVRAYRFSVAWPRILP-EGRG-----RINP--KGLAFYDRLVDRLLASGITPFLTLY  118 (431)
T ss_dssp             HHHHHHHHH-HHHHHHTCCEEEEECCHHHHST-TSSS-----CCCH--HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             chhhhHHHH-HHHHHcCCCEEEcccCHHHccc-CCCC-----CcCH--HHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            355667778 9999999999998754332100 0100     1111  1246689999999999999999985

>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron}

Probab=85.68  E-value=2.6  Score=39.42  Aligned_cols=61  Identities=11%  Similarity=0.065  Sum_probs=45.4

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670          59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL  130 (224)
Q Consensus        59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil  130 (224)
                      .-+.+....-+ |..+++|+..|.+---+..      -.-.|+..++|.    .++++|++-||++|+++++
T Consensus       305 g~n~~~~k~yI-DfAa~~G~~yvlvD~gW~~------~~~~d~~~~~p~----~di~~l~~Ya~~kgV~i~l  365 (641)
T 3a24_A          305 GVNNPTYKAYI-DFASANGIEYVILDEGWAV------NLQADLMQVVKE----IDLKELVDYAASKNVGIIL  365 (641)
T ss_dssp             SSSHHHHHHHH-HHHHHTTCCEEEECTTSBC------TTSCCTTCBCTT----CCHHHHHHHHHHTTCEEEE
T ss_pred             CCCHHHHHHHH-HHHHHcCCCEEEEeccccc------CCCCCccccCCc----CCHHHHHHHHHhcCCEEEE
Confidence            34778888778 9999999999988222221      011267777776    3799999999999999986

>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*

Probab=84.87  E-value=1.7  Score=41.01  Aligned_cols=72  Identities=15%  Similarity=0.277  Sum_probs=48.4

Q ss_pred             CHHHHHHHHHHHHHHcCC--CeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670          61 DLKGMIEKLPEHLHDLGV--GAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHT  137 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~--~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~  137 (224)
                      +-+.+.+-+ +.+++.|+  +.+|+=-=+.     .+|.  || ..|+ +|-+   .++|++++|++|+++++=+-+ ++
T Consensus       188 ~~~ev~~v~-~~~~~~~IP~dvi~lD~~y~-----~~~~--df-t~d~~~FPd---p~~mv~~Lh~~G~k~~l~i~P-~I  254 (693)
T 2g3m_A          188 PQDKVVELV-DIMQKEGFRVAGVFLDIHYM-----DSYK--LF-TWHPYRFPE---PKKLIDELHKRNVKLITIVDH-GI  254 (693)
T ss_dssp             SHHHHHHHH-HHHHHTTCCEEEEEECGGGS-----BTTB--TT-CCCTTTCSC---HHHHHHHHHHTTCEEEEEECS-CE
T ss_pred             CHHHHHHHH-HHHHHcCCCcceEEEeccee-----cCCc--cc-eEChhhCCC---HHHHHHHHHHCCCEEEEEecC-cc
Confidence            445666666 88888888  8887753221     1222  33 5664 4665   689999999999999997776 56


Q ss_pred             Cccc--hhHH
Q psy8670         138 SNQH--EWFK  145 (224)
Q Consensus       138 ~~~~--~w~~  145 (224)
                      +.++  +-++
T Consensus       255 ~~~~~y~~y~  264 (693)
T 2g3m_A          255 RVDQNYSPFL  264 (693)
T ss_dssp             ECCTTCHHHH
T ss_pred             cCCCCcHHHH
Confidence            6544  4454

>1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme, thermostability, TIM barrel, alkylglucosides; 2.50A {Pyrococcus horikoshii} SCOP: c.1.8.4

Probab=84.38  E-value=1.4  Score=39.18  Aligned_cols=63  Identities=14%  Similarity=0.197  Sum_probs=42.6

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      .+....+.+ +.++++|++++-++=-++.-.. .| .     .+|  ....+-+.+++++|+++||++++++.
T Consensus        48 ~Y~~~~eDi-~lm~~~G~~~~R~si~W~ri~P-~~-g-----~~n--~~gl~~yd~lid~l~~~GI~pivtL~  110 (423)
T 1vff_A           48 HWELYRDDI-QLMTSLGYNAYRFSIEWSRLFP-EE-N-----KFN--EDAFMKYREIIDLLLTRGITPLVTLH  110 (423)
T ss_dssp             HHHHHHHHH-HHHHHHTCCEEEEECCHHHHCS-BT-T-----BCC--HHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             chhccHHHH-HHHHHcCCCEEEeecCHHHhCC-CC-C-----CcC--HHHHHHHHHHHHHHHHCCCEEEEEcc
Confidence            455567778 9999999999998743322100 11 1     111  12234559999999999999999984

>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*

Probab=83.97  E-value=2  Score=38.44  Aligned_cols=59  Identities=12%  Similarity=0.157  Sum_probs=39.8

Q ss_pred             HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670          71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL  130 (224)
Q Consensus        71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil  130 (224)
                      +-+|+.|+..+-|+-=+..+-.-|.=..++|...+..++ .+=+++|+++|+++||++-+
T Consensus        85 ~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~n~~~~~~k-rDlv~el~~A~rk~Glk~Gl  143 (450)
T 2wvv_A           85 KMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYK-RDILGELVKAYNDEGIDVHF  143 (450)
T ss_dssp             HHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTC-SCHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHcCCcEEEEEEeecCCccccCCCCCCCccccCCCC-CChHHHHHHHHHHcCCeEEE
Confidence            778999999998876443321112222334544443333 57899999999999999975

>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A {Bacillus circulans} SCOP: c.1.8.4

Probab=83.53  E-value=1.5  Score=39.22  Aligned_cols=65  Identities=22%  Similarity=0.271  Sum_probs=43.8

Q ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      ..+....+.+ +.++++|++++-++--++.-.. .|-.     .+|  .-..+-+.+++++|+++||++++++.
T Consensus        55 d~Y~~~~eDi-~lm~~~G~~~~R~si~W~ri~P-~G~g-----~~n--~~Gl~~y~~~id~l~~~gI~p~vtL~  119 (449)
T 1qox_A           55 DSYHRVEEDV-QLLKDLGVKVYRFSISWPRVLP-QGTG-----EVN--RAGLDYYHRLVDELLANGIEPFCTLY  119 (449)
T ss_dssp             CTTSCHHHHH-HHHHHHTCSEEEEECCHHHHST-TSSS-----SCC--HHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             chhhhhHHHH-HHHHhcCCCeEEecCcHHHhCc-CCCC-----CcC--HHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            3455577788 9999999999998753332100 1101     111  12235679999999999999999984

>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1

Probab=83.23  E-value=2.6  Score=34.75  Aligned_cols=43  Identities=23%  Similarity=0.250  Sum_probs=34.6

Q ss_pred             HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      .+++++||++|.++-=+-              .+     +.++..++|+.+++.|++|+..+
T Consensus        92 ~~~k~lGf~~iEiS~G~i--------------~l-----~~~~~~~~I~~~~~~G~~v~~Ev  134 (251)
T 1qwg_A           92 NECEKLGFEAVEISDGSS--------------DI-----SLEERNNAIKRAKDNGFMVLTEV  134 (251)
T ss_dssp             HHHHHHTCCEEEECCSSS--------------CC-----CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHcCCCEEEECCCcc--------------cC-----CHHHHHHHHHHHHHCCCEEeeec
Confidence            888999999998864221              11     25899999999999999998876

>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase, polysaccharide degradation, transition state mimic, carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A* 1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A* 2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A* 2j7f_A* 2j7g_A* 2j7h_A* ...

Probab=82.92  E-value=2.6  Score=37.90  Aligned_cols=64  Identities=19%  Similarity=0.224  Sum_probs=43.6

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      .+....+.+ +.++++|++++-++=-++.-.. .|-.     .+|  .-..+-+.++|++|+++||++|+++.
T Consensus        79 ~Y~~~~eDi-~lm~~~G~~~~R~si~W~Ri~P-~G~g-----~~n--~~gl~~yd~lid~l~~~GI~pivtL~  142 (468)
T 2j78_A           79 HYNRWKEDI-EIIEKLGVKAYRFSISWPRILP-EGTG-----RVN--QKGLDFYNRIIDTLLEKGITPFVTIY  142 (468)
T ss_dssp             HHHHHHHHH-HHHHHTTCCEEEEECCHHHHST-TSSS-----CCC--HHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ccccCHHHH-HHHHHcCCCEEEeccCHHHhCC-CCCC-----CcC--HHHHHHHHHHHHHHHhcCCEEEEEcc
Confidence            355567778 9999999999999753332100 1100     111  12246689999999999999999994

>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A*

Probab=82.17  E-value=3  Score=37.40  Aligned_cols=59  Identities=12%  Similarity=0.131  Sum_probs=38.2

Q ss_pred             HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy8670          71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILL  130 (224)
Q Consensus        71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vil  130 (224)
                      +-+|+.|++.+.|+-=...+-.-+.=..+++.+++... ..+=+++|+++|+++||++.+
T Consensus       112 ~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~ns~~~~p-krDlv~El~~A~rk~Glk~Gl  170 (455)
T 2zxd_A          112 DLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGP-KRDLVGDLAKAVREAGLRFGV  170 (455)
T ss_dssp             HHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTT-CSCHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHhCCCEEEEEeeccCCccccCCCCCCCcccccCC-CCChHHHHHHHHHHcCCeEEE
Confidence            77899999999887543322111111122343333222 457899999999999999987

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=82.16  E-value=9.7  Score=30.34  Aligned_cols=22  Identities=18%  Similarity=0.258  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHcCCCeEEEcCc
Q psy8670          64 GMIEKLPEHLHDLGVGAVWISPI   86 (224)
Q Consensus        64 ~~~~~l~~~l~~lG~~~i~l~Pi   86 (224)
                      .+.+.+ +.++++|+++|.+.+.
T Consensus        31 ~~~~~l-~~~~~~G~~~vEl~~~   52 (257)
T 3lmz_A           31 DLDTTL-KTLERLDIHYLCIKDF   52 (257)
T ss_dssp             CHHHHH-HHHHHTTCCEEEECTT
T ss_pred             CHHHHH-HHHHHhCCCEEEEecc
Confidence            366677 8889999999999865

>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6

Probab=81.64  E-value=4.4  Score=35.16  Aligned_cols=75  Identities=13%  Similarity=0.229  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccC---------------CCCcCC--CCCCHHHHHHHHHHHHH
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISD---------------YLSFEP--LFGDLKDFETLKERLHA  123 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d---------------~~~v~~--~~G~~~~~~~lv~~~h~  123 (224)
                      +.+.+.+.+ +.++..++|.+++==.   ...++.+.+..               |....+  .+=|.+|++++++-|++
T Consensus        31 ~~~~ik~~i-d~mA~~KlN~lH~Hlt---Ddq~~rle~~~~~~~~~~~~~~~~g~~~~~~~~~g~YT~~di~eiv~YA~~  106 (367)
T 1yht_A           31 SPEVIKSFI-DTISLSGGNFLHLHFS---DHENYAIESHLLNQRAENAVQGKDGIYINPYTGKPFLSYRQLDDIKAYAKA  106 (367)
T ss_dssp             CHHHHHHHH-HHHHHTTCCEEEEECB---SSSCBCBCBTTTTBCGGGSEECTTSCEECTTTCCEEBCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHH-HHHHHcCCcEEEEEEE---cCCCceeeecchhhhhhhhccccCCCcCCCCCCCCCcCHHHHHHHHHHHHH
Confidence            566777777 9999999999976311   00011111110               100000  12278999999999999


Q ss_pred             cCCEEEEec-CCCCCCc
Q psy8670         124 LGIKILLDF-VPNHTSN  139 (224)
Q Consensus       124 ~gi~vilD~-v~nh~~~  139 (224)
                      +||+||-.+ +|.|+..
T Consensus       107 rgI~VIPEID~PGH~~a  123 (367)
T 1yht_A          107 KGIELIPELDSPNHMTA  123 (367)
T ss_dssp             TTCEEEEEEEESSSCHH
T ss_pred             cCCEEEEeccchHHHHH
Confidence            999999765 3778764

>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A*

Probab=80.98  E-value=0.9  Score=44.56  Aligned_cols=59  Identities=14%  Similarity=0.089  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q psy8670          63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLD  131 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD  131 (224)
                      +-+.+.| ..+|++|+|+|.+-=.+..-....  ...||       ....++.++++.|+++||.||+=
T Consensus        56 e~W~d~l-~kmKa~GlNtV~tYV~Wn~hEP~e--G~fdF-------sg~~dL~~fl~la~e~GL~VILR  114 (1003)
T 3og2_A           56 SLYLDVF-HKIKALGFNTVSFYVDWALLEGKP--GRFRA-------DGIFSLEPFFEAATKAGIYLLAR  114 (1003)
T ss_dssp             GGHHHHH-HHHHTTTCCEEEEECCHHHHCSBT--TBCCC-------CGGGCSHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHH-HHHHHcCCCEEEEecchhhcCCCC--CEecc-------cchhhHHHHHHHHHHcCCEEEec
Confidence            4467777 888999999998853332211111  13333       33458999999999999999986

>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31, alpha-glucosidase membrane, disease mutation, disulfide bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL; 2.15A {Homo sapiens} PDB: 3lpo_A*

Probab=80.70  E-value=5.3  Score=38.88  Aligned_cols=68  Identities=16%  Similarity=0.275  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHHHcCC--CeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670          61 DLKGMIEKLPEHLHDLGV--GAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHT  137 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~--~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~  137 (224)
                      +.+.+.+-+ +.+++.||  +.+|+=--+..     ++  .|| ..|+ +|.   +.++|++++|++|+++++=+-+. +
T Consensus       331 s~~ev~~vv-~~~r~~~IP~Dvi~lDidy~~-----~~--~dF-t~D~~~FP---dp~~mv~~Lh~~G~k~vl~idP~-I  397 (898)
T 3lpp_A          331 SLDVVKEVV-RRNREAGIPFDTQVTDIDYME-----DK--KDF-TYDQVAFN---GLPQFVQDLHDHGQKYVIILDPA-I  397 (898)
T ss_dssp             SHHHHHHHH-HHHHHTTCCCCEEEECGGGSS-----TT--CTT-CCCTTTTT---THHHHHHHHHHTTCEEEEEECSC-E
T ss_pred             CHHHHHHHH-HHHHHcCCCceeeEecccccc-----CC--Ccc-eEChhhCC---CHHHHHHHHHHCCCEEEEEeCCc-c
Confidence            456677666 88888888  88887432211     11  233 6665 465   78899999999999999877663 5


Q ss_pred             Cccc
Q psy8670         138 SNQH  141 (224)
Q Consensus       138 ~~~~  141 (224)
                      +.++
T Consensus       398 ~~~~  401 (898)
T 3lpp_A          398 SIGR  401 (898)
T ss_dssp             ECSC
T ss_pred             ccCC
Confidence            5444

>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A*

Probab=80.47  E-value=0.95  Score=44.46  Aligned_cols=61  Identities=16%  Similarity=0.128  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          63 KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      +-+.+.+ ..+|++|+|+|.+-=.+..-....|  ..||       ....+|.++++.|+++||.||+-.-
T Consensus        36 ~~W~d~l-~kmka~G~NtV~~yvfW~~hEP~~G--~fdF-------~g~~dL~~fl~~a~e~Gl~ViLr~G   96 (971)
T 1tg7_A           36 SLYIDIF-EKVKALGFNCVSFYVDWALLEGNPG--HYSA-------EGIFDLQPFFDAAKEAGIYLLARPG   96 (971)
T ss_dssp             GGHHHHH-HHHHTTTCCEEEEECCHHHHCSBTT--BCCC-------CGGGCSHHHHHHHHHHTCEEEEECC
T ss_pred             HHHHHHH-HHHHHcCCCEEEEeccHHHhCCCCC--eecc-------cchHHHHHHHHHHHHcCCEEEEecC
Confidence            3466777 8889999999988533332111111  2233       3456799999999999999999764

>3ahx_A Beta-glucosidase A; cellulases, glycosyl hydrolase, manganese enhancement, hydro; HET: 7PE; 1.90A {Clostridium cellulovorans}

Probab=80.19  E-value=3.7  Score=36.77  Aligned_cols=65  Identities=14%  Similarity=0.226  Sum_probs=44.0

Q ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      ..+....+.+ +.++++|++++-++--++.-.. .|-.     .+|+  -..+-+.+++++|+++||++++++.
T Consensus        56 d~Y~~~~eDi-~lm~~~G~~~~R~si~Wsri~P-~G~g-----~~n~--~G~~~y~~lid~l~~~GI~p~vtL~  120 (453)
T 3ahx_A           56 DHYHRYKEDV-QLLKSLGIKSYRFSIAWPRIFP-KGFG-----EINQ--KGIQFYRDLIDELIKNDIEPAITIY  120 (453)
T ss_dssp             CHHHHHHHHH-HHHHHTTCCEEEEECCHHHHCT-TSSS-----SCCH--HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cHHHHHHHHH-HHHHHhCCCeEecccCHHHhcc-CCCC-----CcCH--HHHHHHHHHHHHHHHCCCEEEEEec
Confidence            3456667778 9999999999998753332100 1100     1111  1245679999999999999999984

>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A*

Probab=80.10  E-value=7.9  Score=36.77  Aligned_cols=68  Identities=15%  Similarity=0.243  Sum_probs=47.2

Q ss_pred             CCHHHHHHHHHHHHHHcCCCeEEE---cCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          60 GDLKGMIEKLPEHLHDLGVGAVWI---SPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        60 g~l~~~~~~l~~~l~~lG~~~i~l---~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      .+.+....-+ |..+++|+..|.+   --=++.......=.+.||.++.|.+    |+++|++=|+++|+++|+=.
T Consensus       368 ~nte~~K~YI-DFAA~~G~eyvLveGwD~GW~~~~~~~~~~~fd~~~p~pd~----Dl~eL~~YA~sKGV~iilw~  438 (738)
T 2d73_A          368 ANTANVKRYI-DFAAAHGFDAVLVEGWNEGWEDWFGNSKDYVFDFVTPYPDF----DVKEIHRYAARKGIKMMMHH  438 (738)
T ss_dssp             CCHHHHHHHH-HHHHHTTCSEEEECSCBTTGGGCSSSCCSSCCCSSCBCTTC----CHHHHHHHHHHTTCEEEEEE
T ss_pred             CCHHHHHHHH-HHHHHcCCCEEEEEeccCCcccccCccccccccccccCCCC----CHHHHHHHHHhCCCEEEEEE
Confidence            4778877778 9999999999987   3322211000111356887887765    68888888888888888744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d1m53a2	478	c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Kle	2e-42
d1m53a2	478	c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Kle	8e-11
d1uoka2	479	c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus	9e-42
d1uoka2	479	c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus	1e-09
d1g5aa2	554	c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysacc	6e-36
d1wzaa2	409	c.1.8.1 (A:28-436) Bacterial alpha-amylase {Haloth	8e-35
d1wzaa2	409	c.1.8.1 (A:28-436) Bacterial alpha-amylase {Haloth	6e-08
d1iv8a2	653	c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase	2e-34
d1lwha2	391	c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Ther	4e-34
d1lwha2	391	c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Ther	1e-06
d1gjwa2	572	c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga	8e-30
d1gjwa2	572	c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga	8e-07
d1eh9a3	400	c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrol	2e-27
d1h3ga3	422	c.1.8.1 (A:96-517) Cyclomaltodextrinase, central d	3e-27
d1h3ga3	422	c.1.8.1 (A:96-517) Cyclomaltodextrinase, central d	7e-08
d1bf2a3	475	c.1.8.1 (A:163-637) Isoamylase, central domain {Ps	5e-27
d1r7aa2	434	c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobac	5e-26
d1r7aa2	434	c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobac	1e-11
d1ht6a2	347	c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hor	3e-25
d1ht6a2	347	c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hor	7e-08
d1j0ha3	382	c.1.8.1 (A:124-505) Neopullulanase, central domain	1e-24
d1j0ha3	382	c.1.8.1 (A:124-505) Neopullulanase, central domain	1e-04
d2guya2	381	c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill	1e-24
d2guya2	381	c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill	5e-06
d1m7xa3	396	c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enz	1e-23
d1m7xa3	396	c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enz	9e-06
d1e43a2	393	c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera	2e-23
d3bmva4	406	c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase	2e-23
d3bmva4	406	c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase	1e-04
d1wzla3	382	c.1.8.1 (A:121-502) Maltogenic amylase, central do	2e-23
d1wzla3	382	c.1.8.1 (A:121-502) Maltogenic amylase, central do	2e-04
d1ud2a2	390	c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillu	3e-23
d1ud2a2	390	c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillu	1e-09
d1ji1a3	432	c.1.8.1 (A:123-554) Maltogenic amylase, central do	5e-23
d2d3na2	394	c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillu	6e-23
d2d3na2	394	c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillu	9e-10
d1qhoa4	407	c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase	2e-22
d1qhoa4	407	c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase	7e-05
d1ea9c3	382	c.1.8.1 (C:122-503) Maltogenic amylase, central do	3e-22
d1ea9c3	382	c.1.8.1 (C:122-503) Maltogenic amylase, central do	3e-04
d2aaaa2	381	c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill	3e-22
d2aaaa2	381	c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill	8e-04
d2bhua3	420	c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydro	5e-22
d2bhua3	420	c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydro	3e-05
d1mxga2	361	c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeo	4e-21
d1mxga2	361	c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeo	3e-09
d2fhfa5	563	c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella p	5e-21
d2fhfa5	563	c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella p	0.002
d1gcya2	357	c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan m	2e-20
d1gcya2	357	c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan m	1e-08
d1hvxa2	393	c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillu	7e-20
d1jaea2	378	c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mea	1e-19
d1jaea2	378	c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mea	1e-08
d1ua7a2	344	c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillu	2e-18
d1ua7a2	344	c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillu	1e-06
d1g94a2	354	c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoa	1e-17
d1g94a2	354	c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoa	1e-06
d1hx0a2	403	c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus s	2e-17
d1hx0a2	403	c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus s	3e-06

>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} Length = 478

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Isomaltulose synthase PalI
species: Klebsiella sp., lx3 [TaxId: 576]

 Score =  147 bits (370), Expect = 2e-42
 Identities = 53/115 (46%), Positives = 82/115 (71%), Gaps = 1/115 (0%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
            WW+ +VFY +YPRSFKD+N DG+GD++G+IEKL  +L  LG+ A+WI+P + SP  D G
Sbjct: 4   AWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLD-YLKSLGIDAIWINPHYDSPNTDNG 62

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
           YDIS+Y      +G ++DF++L   +    +++++D V NHTS+QH WF +S ++
Sbjct: 63  YDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSD 117

>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} Length = 478

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Isomaltulose synthase PalI
species: Klebsiella sp., lx3 [TaxId: 576]

 Score = 58.9 bits (141), Expect = 8e-11
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 22/81 (27%)

Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKIL 197
           L  L  LG+ A+WI+P + SP  D GYDIS+Y +                      ++++
Sbjct: 37  LDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLM 96

Query: 198 LDFVPNHTSNQHEWFKKSLAN 218
           +D V NHTS+QH WF +S ++
Sbjct: 97  IDVVINHTSDQHPWFIQSKSD 117

>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} Length = 479

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Oligo-1,6, glucosidase
species: Bacillus cereus [TaxId: 1396]

 Score =  145 bits (366), Expect = 9e-42
 Identities = 59/156 (37%), Positives = 89/156 (57%), Gaps = 1/156 (0%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFG 95
           +WW+ SV Y +YPRSF DSNGDG+GDL+G+I KL  +L +LG+  +W+SP+++SP  D G
Sbjct: 4   QWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLD-YLKELGIDVIWLSPVYESPNDDNG 62

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
           YDISDY      FG ++D++ L   +H   +K+++D V NHTS++H WF +S  +     
Sbjct: 63  YDISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKY 122

Query: 156 CASLLARLHDLGVGAVWISPIFKSPMADFGYDISDY 191
               + R    G         F      +     +Y
Sbjct: 123 RDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDEY 158

>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} Length = 479

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Oligo-1,6, glucosidase
species: Bacillus cereus [TaxId: 1396]

 Score = 55.0 bits (131), Expect = 1e-09
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 22/85 (25%)

Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKIL 197
           L  L +LG+  +W+SP+++SP  D GYDISDY +                      +K++
Sbjct: 37  LDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMKLM 96

Query: 198 LDFVPNHTSNQHEWFKKSLANIPPY 222
           +D V NHTS++H WF +S  +    
Sbjct: 97  MDLVVNHTSDEHNWFIESRKSKDNK 121

>d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} Length = 554

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Amylosucrase
species: Neisseria polysaccharea [TaxId: 489]

 Score =  130 bits (328), Expect = 6e-36
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 12/133 (9%)

Query: 27  VDVPIQEPLEWWQTS--VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWIS 84
           +D+  +   +W  ++  V    Y   F        GDLKG+ +K+P +  +LG+  + + 
Sbjct: 82  IDIARENNPDWILSNKQVGGVCYVDLFA-------GDLKGLKDKIP-YFQELGLTYLHLM 133

Query: 85  PIFKSP--MADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHE 142
           P+FK P   +D GY +S Y    P  G + D   +   LH  GI  ++DF+ NHTSN+HE
Sbjct: 134 PLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVVDFIFNHTSNEHE 193

Query: 143 WFKKSLANIPPYK 155
           W ++  A  P + 
Sbjct: 194 WAQRCAAGDPLFD 206

>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} Length = 409

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Halothermothrix orenii [TaxId: 31909]

 Score =  125 bits (314), Expect = 8e-35
 Identities = 55/127 (43%), Positives = 76/127 (59%), Gaps = 8/127 (6%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLP-------EHLHDLGVGAVWISPIFKS 89
           + +   +Y ++ RSF DS+GDG+GDLKG+IEKL        E + DLGV  +W+ PIFKS
Sbjct: 1   FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKS 60

Query: 90  PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLA 149
           P    GYD++DY    P +G L+DF  L E  H  GIK+++D   NHTS +H WF K+  
Sbjct: 61  PS-YHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASR 119

Query: 150 NIPPYKC 156
           +      
Sbjct: 120 DKNSEYR 126

>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} Length = 409

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Halothermothrix orenii [TaxId: 31909]

 Score = 50.1 bits (118), Expect = 6e-08
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 23/85 (27%)

Query: 153 PYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR------------------- 193
            Y        + DLGV  +W+ PIFKSP    GYD++DY +                   
Sbjct: 34  DYLNDGDPETIADLGVNGIWLMPIFKSPS-YHGYDVTDYYKINPDYGTLEDFHKLVEAAH 92

Query: 194 ---IKILLDFVPNHTSNQHEWFKKS 215
              IK+++D   NHTS +H WF K+
Sbjct: 93  QRGIKVIIDLPINHTSERHPWFLKA 117

>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 653

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltooligosyl trehalose synthase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score =  127 bits (320), Expect = 2e-34
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFK-SPMADFGYDISDYLSFEPLFGDLKDFETLK 118
            +   +I+ L  +  DLGV  +++SP+   SP ++ GYD+ D+       G  K++  L 
Sbjct: 14  FNFGDVIDNLW-YFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLI 72

Query: 119 ERLHALGIKILLDFVPNHTSNQHEWFKKSLAN 150
           E  H +G+ I+ D VPNH +     ++     
Sbjct: 73  ETAHTIGLGIIQDIVPNHMAVNSLNWRLMDVL 104

>d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} Length = 391

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 4-alpha-glucanotransferase
species: Thermotoga maritima [TaxId: 2336]

 Score =  123 bits (309), Expect = 4e-34
 Identities = 45/114 (39%), Positives = 71/114 (62%), Gaps = 2/114 (1%)

Query: 42  VFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDY 101
           + Y +Y RSF+D N DGVGD +G+   +  +L +LG+  VW+ P+F S  +  GYD+ D+
Sbjct: 2   IGYQIYVRSFRDGNLDGVGDFRGLKNAVS-YLKELGIDFVWLMPVFSSI-SFHGYDVVDF 59

Query: 102 LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
            SF+  +G  ++F+ + E  H  GIK++LD   +HT   H WF+K+L   P Y+
Sbjct: 60  YSFKAEYGSEREFKEMIEAFHDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYR 113

>d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} Length = 391

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 4-alpha-glucanotransferase
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI 194
           ++ L +LG+  VW+ P+F S  +  GYD+ D+   
Sbjct: 29  VSYLKELGIDFVWLMPVFSSI-SFHGYDVVDFYSF 62

>d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 572

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltosyltransferase
species: Thermotoga maritima [TaxId: 2336]

 Score =  113 bits (284), Expect = 8e-30
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 29/139 (20%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGV--------------GDLKGMIEKLPEHLHDLGVGAV 81
           +W + SV Y   PR+    N  G               G    M+  LP  +  LG  A+
Sbjct: 79  DWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLP-FVKSLGADAI 137

Query: 82  WISPIF------KSPMADFGYDISDYLSFEPL--------FGDLKDFETLKERLHALGIK 127
           ++ P+       K   A   Y + + +  +          F   ++F+   E  H LGI+
Sbjct: 138 YLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILGIR 197

Query: 128 ILLDFVPNHTSNQHEWFKK 146
           ++LDF+P   +   +  ++
Sbjct: 198 VILDFIPRTAARDSDLIRE 216

>d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 572

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltosyltransferase
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.9 bits (110), Expect = 8e-07
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 36/94 (38%)

Query: 157 ASLLARLHDLGVGAVWISPIF------KSPMADFGYDISDY------------------- 191
             LL  +  LG  A+++ P+       K   A   Y + +                    
Sbjct: 123 MLLLPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDE 182

Query: 192 -----------LRIKILLDFVPNHTSNQHEWFKK 214
                      L I+++LDF+P   +   +  ++
Sbjct: 183 EFKAFVEACHILGIRVILDFIPRTAARDSDLIRE 216

>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} Length = 400

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

 Score =  105 bits (262), Expect = 2e-27
 Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 7/116 (6%)

Query: 32  QEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP- 90
            E     +  + Y ++  +F        G  +G+I KL  +L DLG+ A+ I PI + P 
Sbjct: 3   NETFLKKEDLIIYEIHVGTFTPE-----GTFEGVIRKLD-YLKDLGITAIEIMPIAQFPG 56

Query: 91  MADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKK 146
             D+GYD     + +  +G  + F  L +  H  G+ ++LD V NH   +  +  K
Sbjct: 57  KRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVK 112

>d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} Length = 422

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclomaltodextrinase, central domain
species: Flavobacterium sp. 92 [TaxId: 197856]

 Score =  105 bits (262), Expect = 3e-27
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 23/131 (17%)

Query: 37  WWQTSVFYHLYPRSFKDSN-------------------GDGVGDLKGMIEKLPEHLHDLG 77
           +      Y + P  F + +                   G   GD++G I+ L  ++  LG
Sbjct: 8   FGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLD-YIAGLG 66

Query: 78  VGAVWISPIFKSPMADF---GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP 134
              +W +P+ ++  A +   GY  +D+   +P +G  +DF  L       G+ ++ D V 
Sbjct: 67  FTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVL 126

Query: 135 NHTSNQHEWFK 145
           +H    H W K
Sbjct: 127 SHIGKHHWWMK 137

>d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} Length = 422

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclomaltodextrinase, central domain
species: Flavobacterium sp. 92 [TaxId: 197856]

 Score = 49.7 bits (117), Expect = 7e-08
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 25/79 (31%)

Query: 160 LARLHDLGVGAVWISPIFKSPMADF---GYDISDY----------------------LRI 194
           L  +  LG   +W +P+ ++  A +   GY  +D+                        +
Sbjct: 59  LDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGM 118

Query: 195 KILLDFVPNHTSNQHEWFK 213
            ++ D V +H    H W K
Sbjct: 119 GLIQDVVLSHIGKHHWWMK 137

>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} Length = 475

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Isoamylase, central domain
species: Pseudomonas amyloderamosa [TaxId: 32043]

 Score =  105 bits (261), Expect = 5e-27
 Identities = 35/187 (18%), Positives = 60/187 (32%), Gaps = 25/187 (13%)

Query: 34  PLEWWQTSVFYHLYPRSFKDSN----GDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS 89
           P    +  V Y ++ R F + +        G   G   K   +L  LGV AV   P+ ++
Sbjct: 10  PTRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKAS-YLASLGVTAVEFLPVQET 68

Query: 90  P-------------MADFGYDISDYLSFEPLF-------GDLKDFETLKERLHALGIKIL 129
                            +GY   +Y S +  +       G   +F+ + +  H  GIK+ 
Sbjct: 69  QNDANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVY 128

Query: 130 LDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDIS 189
           +D V NHT+    W          Y    L    +                 A+F    +
Sbjct: 129 MDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNT 188

Query: 190 DYLRIKI 196
               + +
Sbjct: 189 VAQNLIV 195

>d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]} Length = 434

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Sucrose phosphorylase
species: Bifidobacterium adolescentis [TaxId: 1680]

 Score =  102 bits (253), Expect = 5e-26
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 9/107 (8%)

Query: 49  RSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK-SPMADFGYDISDYLSFEPL 107
            ++ D  GDG   +K M + L     D     V I P F     AD G+D  D+   +  
Sbjct: 8   ITYADRLGDG--TIKSMTDILR-TRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDER 64

Query: 108 FGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPY 154
            G   D   L +        I++D + NH S + + F+  LA     
Sbjct: 65  LGSWDDVAELSK-----THNIMVDAIVNHMSWESKQFQDVLAKGEES 106

>d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]} Length = 434

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Sucrose phosphorylase
species: Bifidobacterium adolescentis [TaxId: 1680]

 Score = 61.3 bits (147), Expect = 1e-11
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 18/83 (21%)

Query: 158 SLLARLHDLGVGAVWISPIFK-SPMADFGYDISDYLRI-----------------KILLD 199
            +L    D     V I P F     AD G+D  D+ ++                  I++D
Sbjct: 24  DILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDERLGSWDDVAELSKTHNIMVD 83

Query: 200 FVPNHTSNQHEWFKKSLANIPPY 222
            + NH S + + F+  LA     
Sbjct: 84  AIVNHMSWESKQFQDVLAKGEES 106

>d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} Length = 347

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Plant alpha-amylase
species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]

 Score = 98.9 bits (245), Expect = 3e-25
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 4/103 (3%)

Query: 44  YHLYPRSFK-DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYL 102
           + +  + F  +S     G    M+ K+   +   GV  VW+ P   S   + GY      
Sbjct: 1   HQVLFQGFNWESWKQSGGWYNMMMGKVD-DIAAAGVTHVWLPPPSHSVSNE-GYMPGRLY 58

Query: 103 SFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF 144
             +   +G+  + ++L   LH  G++ + D V NH    ++  
Sbjct: 59  DIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDS 101

>d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} Length = 347

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Plant alpha-amylase
species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]

 Score = 49.6 bits (117), Expect = 7e-08
 Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 24/79 (30%)

Query: 157 ASLLARLHDLGVGAVWISPIFKSPMADFGYDISDY-----------------------LR 193
              +  +   GV  VW+ P   S   + GY                              
Sbjct: 24  MGKVDDIAAAGVTHVWLPPPSHSVSNE-GYMPGRLYDIDASKYGNAAELKSLIGALHGKG 82

Query: 194 IKILLDFVPNHTSNQHEWF 212
           ++ + D V NH    ++  
Sbjct: 83  VQAIADIVINHRCADYKDS 101

>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 382

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Neopullulanase, central domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 97.8 bits (242), Expect = 1e-24
 Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 21/141 (14%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGV-------------------GDLKGMIEKLPEHLHDL 76
           +W + +V+Y ++P  F + N                       GDL+G+I+ L  +L DL
Sbjct: 7   DWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLD-YLVDL 65

Query: 77  GVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNH 136
           G+  ++++PIF+SP ++  YD +DY   +P FGD +  +TL +R H  GI+++LD V NH
Sbjct: 66  GITGIYLTPIFRSP-SNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNH 124

Query: 137 TSNQHEWFKKSLANIPPYKCA 157
              +   F+    N    K  
Sbjct: 125 CGYEFAPFQDVWKNGESSKYK 145

>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 382

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Neopullulanase, central domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI 194
           L  L DLG+  ++++PIF+SP ++  YD +DY  +
Sbjct: 59  LDYLVDLGITGIYLTPIFRSP-SNHKYDTADYFEV 92

>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} Length = 381

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]

 Score = 97.4 bits (241), Expect = 1e-24
 Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 20/138 (14%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDGV------------GDLKGMIEKLPEHLHDLGVGAVWIS 84
            W++   Y L    F  ++G               G  +G+I+KL  ++  +G  A+WI+
Sbjct: 5   DWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLD-YIQGMGFTAIWIT 63

Query: 85  PIFKSPM-------ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT 137
           P+            A  GY   D  S    +G   D + L   LH  G+ +++D V NH 
Sbjct: 64  PVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHM 123

Query: 138 SNQHEWFKKSLANIPPYK 155
                      +   P+ 
Sbjct: 124 GYDGAGSSVDYSVFKPFS 141

>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} Length = 381

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 29/93 (31%)

Query: 160 LARLHDLGVGAVWISPIFKSPM-------ADFGYDISDYLRI------------------ 194
           L  +  +G  A+WI+P+            A  GY   D   +                  
Sbjct: 49  LDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALH 108

Query: 195 ----KILLDFVPNHTSNQHEWFKKSLANIPPYS 223
                +++D V NH            +   P+S
Sbjct: 109 ERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFS 141

>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} Length = 396

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 1,4-alpha-glucan branching enzyme, central domain
species: Escherichia coli [TaxId: 562]

 Score = 95.1 bits (235), Expect = 1e-23
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 2/104 (1%)

Query: 44  YHLYPRSFK-DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD-FGYDISDY 101
           Y ++  S++  ++ +     + + ++L  +   +G   + + PI + P    +GY  +  
Sbjct: 20  YEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGL 79

Query: 102 LSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK 145
            +    FG   DF    +  HA G+ ++LD+VP H         
Sbjct: 80  YAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALA 123

>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} Length = 396

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 1,4-alpha-glucan branching enzyme, central domain
species: Escherichia coli [TaxId: 562]

 Score = 43.4 bits (101), Expect = 9e-06
 Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 159 LLARLHDLGVGAVWISPIFKSPMAD-FGYDISDYLRI 194
           L+     +G   + + PI + P    +GY  +     
Sbjct: 46  LVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAP 82

>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} Length = 393

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]

 Score = 94.7 bits (234), Expect = 2e-23
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 12/145 (8%)

Query: 53  DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSF------- 104
            +  DG    K +      HL D+G+ AVWI P +K    +D GY   D           
Sbjct: 12  YTPNDG-QHWKRLQNDAE-HLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKG 69

Query: 105 --EPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLAR 162
                +G   + +     LH+  +++  D V NH +        +   + P       + 
Sbjct: 70  TVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSE 129

Query: 163 LHDLGVGAVWISPIFKSPMADFGYD 187
            + +     +  P   +  +DF + 
Sbjct: 130 EYQIKAWTDFRFPGRGNTYSDFKWH 154

>d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} Length = 406

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Thermoanaerobacterium [TaxId: 28895]

 Score = 94.8 bits (234), Expect = 2e-23
 Identities = 40/150 (26%), Positives = 56/150 (37%), Gaps = 31/150 (20%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDG------------------VGDLKGMIEKLPE-HLHDLG 77
            + T V Y +    F D N                      GD +G+I K+ + +L  +G
Sbjct: 11  NYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLTGMG 70

Query: 78  VGAVWISPIFK------------SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALG 125
           V A+WI    +               +  GY   D+    P FG   DF+ L    HA  
Sbjct: 71  VTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHN 130

Query: 126 IKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
           IK+++DF PNHTS   E       N   Y 
Sbjct: 131 IKVIIDFAPNHTSPASETDPTYAENGRLYD 160

>d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} Length = 406

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Thermoanaerobacterium [TaxId: 28895]

 Score = 40.1 bits (92), Expect = 1e-04
 Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 34/94 (36%)

Query: 163 LHDLGVGAVWISPIFK------------SPMADFGYDISDY------------------- 191
           L  +GV A+WI    +               +  GY   D+                   
Sbjct: 66  LTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINT 125

Query: 192 ---LRIKILLDFVPNHTSNQHEWFKKSLANIPPY 222
                IK+++DF PNHTS   E       N   Y
Sbjct: 126 AHAHNIKVIIDFAPNHTSPASETDPTYAENGRLY 159

>d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} Length = 382

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]

 Score = 94.4 bits (233), Expect = 2e-23
 Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 22/139 (15%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDG--------------------VGDLKGMIEKLPEHLHD 75
           EW + +V Y ++P  F + +                        GDLKG+I++LP +L +
Sbjct: 6   EWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLP-YLEE 64

Query: 76  LGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPN 135
           LGV A++ +PIF SP +   YD +DYL+ +P FGDL  F  L +  H  GIKI+LD V N
Sbjct: 65  LGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFN 123

Query: 136 HTSNQHEWFKKSLANIPPY 154
           H  +Q   F+  L      
Sbjct: 124 HAGDQFFAFRDVLQKGEQS 142

>d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} Length = 382

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDY 191
           L  L +LGV A++ +PIF SP +   YD +DY
Sbjct: 59  LPYLEELGVTALYFTPIFASP-SHHKYDTADY 89

>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} Length = 390

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus sp., ksm-k38 [TaxId: 1409]

 Score = 94.4 bits (233), Expect = 3e-23
 Identities = 28/169 (16%), Positives = 48/169 (28%), Gaps = 12/169 (7%)

Query: 53  DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSF------- 104
               DG      + +     L D G+ A+WI P +K    AD GY   D           
Sbjct: 14  HLENDG-QHWNRLHDDAA-ALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKG 71

Query: 105 --EPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLAR 162
                +G     E     L +  I +  D V NH              + P      ++ 
Sbjct: 72  TVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISG 131

Query: 163 LHDLGVGAVWISPIFKSPMADFGYDISDYLRIKILLDFVPNHTSNQHEW 211
            + +     +      +  +DF +    +  +     +  NH       
Sbjct: 132 AYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANT 180

>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} Length = 390

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus sp., ksm-k38 [TaxId: 1409]

 Score = 55.1 bits (131), Expect = 1e-09
 Identities = 20/99 (20%), Positives = 26/99 (26%), Gaps = 32/99 (32%)

Query: 157 ASLLARLHDLGVGAVWISPIFKS-PMADFGYDISDY------------------------ 191
               A L D G+ A+WI P +K    AD GY   D                         
Sbjct: 26  HDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLER 85

Query: 192 -------LRIKILLDFVPNHTSNQHEWFKKSLANIPPYS 223
                    I +  D V NH              + P +
Sbjct: 86  AIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTN 124

>d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} Length = 432

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]

 Score = 93.7 bits (231), Expect = 5e-23
 Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 41/151 (27%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDG------------------------------------V 59
           +W +  V Y ++P  F + +                                        
Sbjct: 6   DWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFG 65

Query: 60  GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKE 119
           GDL G+ +KL      LG   ++++PIFK+P  +  YD  DY++ +P FGD    +TL  
Sbjct: 66  GDLAGIDQKLGYIKKTLGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLIN 124

Query: 120 RLH----ALGIKILLDFVPNHTSNQHEWFKK 146
            +H         ++LD V NHT + H WF K
Sbjct: 125 DIHSTANGPKGYLILDGVFNHTGDSHPWFDK 155

>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} Length = 394

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus sp. 707 [TaxId: 1416]

 Score = 93.1 bits (230), Expect = 6e-23
 Identities = 25/145 (17%), Positives = 41/145 (28%), Gaps = 12/145 (8%)

Query: 53  DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-MADFGYDISDYLSF------- 104
               DG      +      +L   G+ AVWI P +K     D GY   D           
Sbjct: 12  YLPNDG-NHWNRLNSDAS-NLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKG 69

Query: 105 --EPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLAR 162
                +G     +     L   GI++  D V NH              + P      +  
Sbjct: 70  TVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTG 129

Query: 163 LHDLGVGAVWISPIFKSPMADFGYD 187
            + +     +  P   +  + F + 
Sbjct: 130 EYTIEAWTRFDFPGRGNTHSSFKWR 154

>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} Length = 394

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus sp. 707 [TaxId: 1416]

 Score = 55.4 bits (132), Expect = 9e-10
 Identities = 19/99 (19%), Positives = 26/99 (26%), Gaps = 32/99 (32%)

Query: 157 ASLLARLHDLGVGAVWISPIFKSP-MADFGYDISDY------------------------ 191
            S  + L   G+ AVWI P +K     D GY   D                         
Sbjct: 24  NSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQA 83

Query: 192 -------LRIKILLDFVPNHTSNQHEWFKKSLANIPPYS 223
                    I++  D V NH              + P +
Sbjct: 84  AVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNN 122

>d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} Length = 407

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

 Score = 92.1 bits (227), Expect = 2e-22
 Identities = 39/159 (24%), Positives = 60/159 (37%), Gaps = 30/159 (18%)

Query: 36  EWWQTSVFYHLYPRSFKDSNGDGV---------------------GDLKGMIEKLPEHLH 74
              +  V Y +    F D +                         GDL+G+ +KLP +L 
Sbjct: 4   ASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLP-YLK 62

Query: 75  DLGVGAVWISPIFKSP--------MADFGYDISDYLSFEPLFGDLKDFETLKERLHALGI 126
            LGV  +W+SP+  +             GY   D+   E  FG+   F+TL    H  GI
Sbjct: 63  QLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGI 122

Query: 127 KILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHD 165
           K+++DFVPNH++               Y   + +    D
Sbjct: 123 KVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFD 161

>d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} Length = 407

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

 Score = 40.8 bits (94), Expect = 7e-05
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 30/93 (32%)

Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDY---------------------------- 191
           L  L  LGV  +W+SP+  +     G D + Y                            
Sbjct: 58  LPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDA 117

Query: 192 --LRIKILLDFVPNHTSNQHEWFKKSLANIPPY 222
               IK+++DFVPNH++               Y
Sbjct: 118 HQNGIKVIVDFVPNHSTPFKANDSTFAEGGALY 150

>d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} Length = 382

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]

 Score = 91.3 bits (225), Expect = 3e-22
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 21/137 (15%)

Query: 33  EPLEWWQTSVFYHLYPRSFKDSNGDG-------------------VGDLKGMIEKLPEHL 73
           +P  W + ++FY ++P  F + +                       GDL+G+I+ L  HL
Sbjct: 2   QPPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLD-HL 60

Query: 74  HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV 133
             LGV AV+ +P+FK+   +  YD  DY   +P FGD    + L +  H  GI++LLD V
Sbjct: 61  SKLGVNAVYFTPLFKAT-TNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAV 119

Query: 134 PNHTSNQHEWFKKSLAN 150
            NH+      F   L N
Sbjct: 120 FNHSGRTFPPFVDVLKN 136

>d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} Length = 382

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 23/81 (28%)

Query: 160 LARLHDLGVGAVWISPIFKSPMADFGYDISDYLRI----------------------KIL 197
           L  L  LGV AV+ +P+FK+   +  YD  DY +I                      ++L
Sbjct: 57  LDHLSKLGVNAVYFTPLFKAT-TNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVL 115

Query: 198 LDFVPNHTSNQHEWFKKSLAN 218
           LD V NH+      F   L N
Sbjct: 116 LDAVFNHSGRTFPPFVDVLKN 136

>d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} Length = 381

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus niger, acid amylase [TaxId: 5061]

 Score = 91.3 bits (225), Expect = 3e-22
 Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 20/139 (14%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDGV------------GDLKGMIEKLPEHLHDLGVGAVWIS 84
            W+T   Y L    F  ++                G  +G+I+ L  ++  +G  A+WIS
Sbjct: 5   SWRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLD-YIEGMGFTAIWIS 63

Query: 85  PIFKSPMADF-------GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT 137
           PI +    D        GY           FG   + ++L + LHA G+ +++D VP+H 
Sbjct: 64  PITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHM 123

Query: 138 SNQHEWFKKSLANIPPYKC 156
                      +   P+  
Sbjct: 124 GYAGNGNDVDYSVFDPFDS 142

>d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} Length = 381

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus niger, acid amylase [TaxId: 5061]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 29/92 (31%)

Query: 160 LARLHDLGVGAVWISPIFKSPMADF-------GYDISDYLRI------------------ 194
           L  +  +G  A+WISPI +    D        GY       +                  
Sbjct: 49  LDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALH 108

Query: 195 ----KILLDFVPNHTSNQHEWFKKSLANIPPY 222
                +++D VP+H            +   P+
Sbjct: 109 ARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPF 140

>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} Length = 420

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 91.0 bits (224), Expect = 5e-22
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 34  PLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-MA 92
                   VFY ++  +F        G  +   EKLP +L +LGV A+ + P+       
Sbjct: 10  HGIKLADCVFYEVHVGTFTPE-----GTYRAAAEKLP-YLKELGVTAIQVMPLAAFDGQR 63

Query: 93  DFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIP 152
            +GYD + + +    +G  +D   L +  H LG+ + LD V NH      +      +  
Sbjct: 64  GWGYDGAAFYAPYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYLSSYAPSYF 123

Query: 153 PYKC 156
             + 
Sbjct: 124 TDRF 127

>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} Length = 420

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 157 ASLLARLHDLGVGAVWISPIFKSP-MADFGYDISDYLRI 194
           A  L  L +LGV A+ + P+        +GYD + +   
Sbjct: 37  AEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAP 75

>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 361

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

 Score = 88.0 bits (217), Expect = 4e-21
 Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 13/115 (11%)

Query: 53  DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFK--SPMADFGYDISDYLSFE----- 105
           D  G G      +  K+P   ++ G+ A+W+ P  K  S     GYD  DY         
Sbjct: 19  DVPGGG-IWWDHIRSKIP-EWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQK 76

Query: 106 ----PLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKC 156
                 FG  ++   L +  HA GIK++ D V NH +     +   + +      
Sbjct: 77  GTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDF 131

>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 361

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

 Score = 54.1 bits (129), Expect = 3e-09
 Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 33/99 (33%)

Query: 157 ASLLARLHDLGVGAVWISPIFK--SPMADFGYDISDY----------------------- 191
            S +   ++ G+ A+W+ P  K  S     GYD  DY                       
Sbjct: 31  RSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELV 90

Query: 192 --------LRIKILLDFVPNHTSNQHEWFKKSLANIPPY 222
                     IK++ D V NH +     +   + +    
Sbjct: 91  RLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWT 129

>d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} Length = 563

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 88.7 bits (218), Expect = 5e-21
 Identities = 25/217 (11%), Positives = 55/217 (25%), Gaps = 26/217 (11%)

Query: 22  GFKEDVDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKG-----------MIEKLP 70
           G+        Q+          +  + R     +     +L+G           M++ L 
Sbjct: 3   GWDGLTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLK 62

Query: 71  EHLHDLGVGAVWISPI--FKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKI 128
             L   GV  + + P+    +              F  L       ++ +   +      
Sbjct: 63  -QLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGST 121

Query: 129 LLDFVPNHTSNQHEWFKKSLANIPP----------YKCASLLARLHDLGVGAVWISPIFK 178
           + + +     N  +   +  A              Y                   + I +
Sbjct: 122 VEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIKE 181

Query: 179 SPMADFGYDISDYLRIKILLDFVPNHTSNQHEWFKKS 215
                    I   L + +++D V NHT+      + S
Sbjct: 182 --FRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTS 216

>d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} Length = 563

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 7/85 (8%), Positives = 17/85 (20%), Gaps = 24/85 (28%)

Query: 160 LARLHDLGVGAVWISPI--FKSPMADFGYDISDY----------------------LRIK 195
           L +L   GV  + + P+    +                                      
Sbjct: 61  LKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGS 120

Query: 196 ILLDFVPNHTSNQHEWFKKSLANIP 220
            + + +     N  +   +  A   
Sbjct: 121 TVEEVLTQLKQNDSKDNPQVQALNT 145

>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} Length = 357

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase)
species: Pseudomonas stutzeri [TaxId: 316]

 Score = 85.7 bits (211), Expect = 2e-20
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 17/133 (12%)

Query: 37  WWQTSVFYH----LYPRSFK-DSNGDGVGDL-KGMIEKLPEHLHDLGVGAVWISPIFKSP 90
               +V YH    +  + F  +   +   D    + ++    +   G  A+W+   ++  
Sbjct: 5   KSPNAVRYHGGDEIILQGFHWNVVREAPNDWYNILRQQAA-TIAADGFSAIWMPVPWRDF 63

Query: 91  MADF---------GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQH 141
            +           GY   D+ +    +G           L   G+K+L D VPNH +  +
Sbjct: 64  SSWSDGSKSGGGEGYFWHDF-NKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGY 122

Query: 142 EWFKKSLANIPPY 154
              + +L     +
Sbjct: 123 PDKEINLPAGQGF 135

>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} Length = 357

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase)
species: Pseudomonas stutzeri [TaxId: 316]

 Score = 52.2 bits (124), Expect = 1e-08
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 30/96 (31%)

Query: 157 ASLLARLHDLGVGAVWISPIFKSPMADF---------GYDISDY---------------- 191
               A +   G  A+W+   ++   +           GY   D+                
Sbjct: 40  RQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAA 99

Query: 192 -----LRIKILLDFVPNHTSNQHEWFKKSLANIPPY 222
                  +K+L D VPNH +  +   + +L     +
Sbjct: 100 SALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGF 135

>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} Length = 393

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 84.7 bits (208), Expect = 7e-20
 Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 15/169 (8%)

Query: 57  DGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSF---------EP 106
           D       +  +   +L  LG+ A+W+ P +K    +D GY + D               
Sbjct: 18  DDGTLWTKVANEAN-NLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRT 76

Query: 107 LFGDLKDFETLKERLHALGIKILLDFVPNHT--SNQHEWFKKSLANIPPYKCASLLARLH 164
            +G    +    +  HA G+++  D V +H   ++  EW      N  P      ++  +
Sbjct: 77  KYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVN--PSDRNQEISGTY 134

Query: 165 DLGVGAVWISPIFKSPMADFGYDISDYLRIKILLDFVPNHTSNQHEWFK 213
            +     +  P   +  + F +    +  +        +         K
Sbjct: 135 QIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGK 183

>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} Length = 378

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]

 Score = 83.8 bits (206), Expect = 1e-19
 Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 17/120 (14%)

Query: 41  SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD-----FG 95
           +   HL+   + D           + ++    L   G G V ISP  +  +AD       
Sbjct: 11  NSIVHLFEWKWND-----------IADECERFLQPQGFGGVQISPPNEYLVADGRPWWER 59

Query: 96  YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
           Y    Y       GD   F  +  R +  G++I +D V NH +  +       +      
Sbjct: 60  YQPVSY-IINTRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGM 118

>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} Length = 378

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]

 Score = 51.8 bits (123), Expect = 1e-08
 Identities = 16/90 (17%), Positives = 24/90 (26%), Gaps = 26/90 (28%)

Query: 159 LLARLHDLGVGAVWISPIFKSPMAD-----FGYDISDY---------------------L 192
               L   G G V ISP  +  +AD       Y    Y                      
Sbjct: 28  CERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDMTRRCNDA 87

Query: 193 RIKILLDFVPNHTSNQHEWFKKSLANIPPY 222
            ++I +D V NH +  +       +     
Sbjct: 88  GVRIYVDAVINHMTGMNGVGTSGSSADHDG 117

>d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} Length = 344

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus subtilis [TaxId: 1423]

 Score = 80.4 bits (197), Expect = 2e-18
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 22/130 (16%)

Query: 37  WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADF-- 94
             ++    H +  SF             +   +   +HD G  A+  SPI +    +   
Sbjct: 2   SIKSGTILHAWNWSFNT-----------LKHNMK-DIHDAGYTAIQTSPINQVKEGNQGD 49

Query: 95  --------GYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKK 146
                    Y  + Y       G  ++F+ +       GIK+++D V NHT+  +     
Sbjct: 50  KSMSNWYWLYQPTSYQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISN 109

Query: 147 SLANIPPYKC 156
            + +IP +  
Sbjct: 110 EVKSIPNWTH 119

>d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} Length = 344

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus subtilis [TaxId: 1423]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 32/98 (32%)

Query: 157 ASLLARLHDLGVGAVWISPIFKSPMADF----------GYDISDYLRI------------ 194
              +  +HD G  A+  SPI +    +            Y  + Y               
Sbjct: 20  KHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEFKE 79

Query: 195 ----------KILLDFVPNHTSNQHEWFKKSLANIPPY 222
                     K+++D V NHT+  +      + +IP +
Sbjct: 80  MCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPNW 117

>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} Length = 354

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]

 Score = 78.0 bits (191), Expect = 1e-17
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 63  KGMIEKLPEHLHDLGVGAVWISPIFKSPMAD---FGYDISDYLSFEPLFGDLKDFETLKE 119
           + + ++  ++L   G  AV +SP  +          Y    Y   +   G+   F  +  
Sbjct: 14  QDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY-ELQSRGGNRAQFIDMVN 72

Query: 120 RLHALGIKILLDFVPNHTSNQHEWFK 145
           R  A G+ I +D + NH +       
Sbjct: 73  RCSAAGVDIYVDTLINHMAAGSGTGT 98

>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} Length = 354

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 12/75 (16%), Positives = 18/75 (24%), Gaps = 24/75 (32%)

Query: 163 LHDLGVGAVWISPIFKSPMAD---FGYDISDY---------------------LRIKILL 198
           L   G  AV +SP  +          Y    Y                       + I +
Sbjct: 24  LGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIYV 83

Query: 199 DFVPNHTSNQHEWFK 213
           D + NH +       
Sbjct: 84  DTLINHMAAGSGTGT 98

>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 403

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 77.6 bits (190), Expect = 2e-17
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 8/100 (8%)

Query: 63  KGMIEKLPEHLHDLGVGAVWISPIFKSPMAD-------FGYDISDYLSFEPLFGDLKDFE 115
             +  +   +L   G G V +SP  ++ +           Y    Y       G+  +F 
Sbjct: 22  VDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSY-KLCTRSGNENEFR 80

Query: 116 TLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYK 155
            +  R + +G++I +D V NH                   
Sbjct: 81  DMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCN 120

>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 403

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 44.9 bits (105), Expect = 3e-06
 Identities = 13/92 (14%), Positives = 21/92 (22%), Gaps = 28/92 (30%)

Query: 159 LLARLHDLGVGAVWISPIFKSPMAD-------FGYDISDY-------------------- 191
               L   G G V +SP  ++ +           Y    Y                    
Sbjct: 28  CERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDMVTRCN 87

Query: 192 -LRIKILLDFVPNHTSNQHEWFKKSLANIPPY 222
            + ++I +D V NH                  
Sbjct: 88  NVGVRIYVDAVINHMCGSGAAAGTGTTCGSYC 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d1m53a2	478	Isomaltulose synthase PalI {Klebsiella sp., lx3 [T	100.0
d1uoka2	479	Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 13	100.0
d1ea9c3	382	Maltogenic amylase, central domain {Bacillus sp.,	100.0
d1j0ha3	382	Neopullulanase, central domain {Bacillus stearothe	100.0
d1wzla3	382	Maltogenic amylase, central domain {Thermoactinomy	100.0
d1lwha2	391	4-alpha-glucanotransferase {Thermotoga maritima [T	100.0
d1wzaa2	409	Bacterial alpha-amylase {Halothermothrix orenii [T	100.0
d1bf2a3	475	Isoamylase, central domain {Pseudomonas amyloderam	100.0
d1h3ga3	422	Cyclomaltodextrinase, central domain {Flavobacteri	100.0
d1qhoa4	407	Cyclodextrin glycosyltransferase {Bacillus stearot	100.0
d1ji1a3	432	Maltogenic amylase, central domain {Thermoactinomy	100.0
d3bmva4	406	Cyclodextrin glycosyltransferase {Thermoanaerobact	100.0
d1g5aa2	554	Amylosucrase {Neisseria polysaccharea [TaxId: 489]	100.0
d2guya2	381	Fungal alpha-amylases {Aspergillus oryzae, Taka-am	100.0
d2fhfa5	563	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	100.0
d1gjwa2	572	Maltosyltransferase {Thermotoga maritima [TaxId: 2	100.0
d2bhua3	420	Glycosyltrehalose trehalohydrolase, central domain	100.0
d1eh9a3	400	Glycosyltrehalose trehalohydrolase, central domain	99.98
d1m7xa3	396	1,4-alpha-glucan branching enzyme, central domain	99.98
d2aaaa2	381	Fungal alpha-amylases {Aspergillus niger, acid amy	99.97
d1ht6a2	347	Plant alpha-amylase {Barley (Hordeum vulgare), AMY	99.97
d1r7aa2	434	Sucrose phosphorylase {Bifidobacterium adolescenti	99.97
d1ua7a2	344	Bacterial alpha-amylase {Bacillus subtilis [TaxId:	99.96
d1gcya2	357	G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase	99.95
d1mxga2	361	Bacterial alpha-amylase {Archaeon Pyrococcus woese	99.94
d1ud2a2	390	Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta	99.94
d1e43a2	393	Bacterial alpha-amylase {Chimera (Bacillus amyloli	99.94
d1hvxa2	393	Bacterial alpha-amylase {Bacillus stearothermophil	99.93
d1jaea2	378	Animal alpha-amylase {Yellow mealworm (Tenebrio mo	99.93
d1hx0a2	403	Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982	99.93
d1g94a2	354	Bacterial alpha-amylase {Pseudoalteromonas halopla	99.92
d1iv8a2	653	Maltooligosyl trehalose synthase {Archaeon Sulfolo	99.91
d2d3na2	394	Bacterial alpha-amylase {Bacillus sp. 707 [TaxId:	99.91
d2fhfa5	563	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	98.86
d1g5aa2	554	Amylosucrase {Neisseria polysaccharea [TaxId: 489]	98.78
d1r7aa2	434	Sucrose phosphorylase {Bifidobacterium adolescenti	98.65
d1uoka2	479	Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 13	98.39
d1m53a2	478	Isomaltulose synthase PalI {Klebsiella sp., lx3 [T	98.37
d1lwha2	391	4-alpha-glucanotransferase {Thermotoga maritima [T	98.17
d1ea9c3	382	Maltogenic amylase, central domain {Bacillus sp.,	98.12
d1ji1a3	432	Maltogenic amylase, central domain {Thermoactinomy	98.1
d1eh9a3	400	Glycosyltrehalose trehalohydrolase, central domain	98.08
d1j0ha3	382	Neopullulanase, central domain {Bacillus stearothe	97.96
d1wzla3	382	Maltogenic amylase, central domain {Thermoactinomy	97.93
d1ua7a2	344	Bacterial alpha-amylase {Bacillus subtilis [TaxId:	97.92
d1wzaa2	409	Bacterial alpha-amylase {Halothermothrix orenii [T	97.92
d1iv8a2	653	Maltooligosyl trehalose synthase {Archaeon Sulfolo	97.88
d1m7xa3	396	1,4-alpha-glucan branching enzyme, central domain	97.87
d1bf2a3	475	Isoamylase, central domain {Pseudomonas amyloderam	97.87
d1h3ga3	422	Cyclomaltodextrinase, central domain {Flavobacteri	97.85
d1ht6a2	347	Plant alpha-amylase {Barley (Hordeum vulgare), AMY	97.81
d2bhua3	420	Glycosyltrehalose trehalohydrolase, central domain	97.81
d3bmva4	406	Cyclodextrin glycosyltransferase {Thermoanaerobact	97.77
d1gjwa2	572	Maltosyltransferase {Thermotoga maritima [TaxId: 2	97.73
d1mxga2	361	Bacterial alpha-amylase {Archaeon Pyrococcus woese	97.67
d1gcya2	357	G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase	97.65
d1qhoa4	407	Cyclodextrin glycosyltransferase {Bacillus stearot	97.62
d2guya2	381	Fungal alpha-amylases {Aspergillus oryzae, Taka-am	97.62
d1ud2a2	390	Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta	97.55
d1hvxa2	393	Bacterial alpha-amylase {Bacillus stearothermophil	97.4
d1e43a2	393	Bacterial alpha-amylase {Chimera (Bacillus amyloli	97.38
d2aaaa2	381	Fungal alpha-amylases {Aspergillus niger, acid amy	97.37
d2d3na2	394	Bacterial alpha-amylase {Bacillus sp. 707 [TaxId:	97.31
d1hx0a2	403	Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982	97.13
d1g94a2	354	Bacterial alpha-amylase {Pseudoalteromonas halopla	97.11
d1uuqa_	410	Exomannosidase {Cellvibrio mixtus [TaxId: 39650]}	96.83
d1jaea2	378	Animal alpha-amylase {Yellow mealworm (Tenebrio mo	96.8
d2c0ha1	350	endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed	96.54
d1ecea_	358	Endocellulase E1 {Acidothermus cellulolyticus [Tax	96.5
d1qnra_	344	Beta-mannanase {Trichoderma reesei [TaxId: 51453]}	96.37
d1wkya2	297	Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449	96.3
d1rh9a1	370	Beta-mannanase {Tomato (Lycopersicon esculentum) [	96.07
d1vjza_	325	Endoglucanase homologue TM1752 {Thermotoga maritim	96.04
d2pb1a1	394	Exo-beta-(1,3)-glucanase {Yeast (Candida albicans)	96.02
d1ceoa_	340	Endoglucanase CelC {Clostridium thermocellum [TaxI	95.92
d1hjsa_	332	Beta-1,4-galactanase {Thielavia heterothallica, ak	95.74
d1h4pa_	408	Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom	95.68
d1eswa_	500	Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]}	95.39
d1x7fa2	244	Outer surface protein, N-terminal domain {Bacillus	95.33
d1foba_	334	Beta-1,4-galactanase {Fungus (Aspergillus aculeatu	95.26
d1edga_	380	Endoglucanase CelA {Clostridium cellulolyticum [Ta	95.15
d1ur4a_	387	Beta-1,4-galactanase {Bacillus licheniformis [TaxI	95.14
d1zy9a2	348	Alpha-galactosidase GalA catalytic domain {Thermot	95.02
d1g01a_	357	Alkaline cellulase K catalytic domain {Bacillus sp	94.9
d7a3ha_	300	Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId	94.54
d1bqca_	302	Beta-mannanase {Thermomonospora fusca [TaxId: 2021	94.49
d1kwga2	393	A4 beta-galactosidase {Thermus thermophilus [TaxId	94.06
d1tz7a1	485	Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363]	94.01
d1h1na_	305	Endocellulase EngI {Thermoascus aurantiacus [TaxId	93.98
d1x1na1	523	Amylomaltase MalQ {Potato (Solanum tuberosum) [Tax	93.78
d1tvna1	293	Endoglucanase Cel5a {Pseudoalteromonas haloplankti	93.68
d1egza_	291	Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId:	92.82
d2f2ha4	338	Putative glucosidase YicI, domain 2 {Escherichia c	92.38
d1tg7a5	354	Beta-galactosidase LacA, N-terminal domain {Penici	91.93
d2gjxa1	362	beta-hexosaminidase A {Human (Homo sapiens) [TaxId	91.33
d1nowa1	353	beta-hexosaminidase B {Human (Homo sapiens) [TaxId	90.89
d1qbaa3	443	Bacterial chitobiase (beta-N-acetylhexosaminidase)	90.28
d1yhta1	344	Dispersin B, DspB {Actinobacillus actinomycetemcom	90.07
d1vema2	417	Bacterial beta-amylase {Bacillus cereus [TaxId: 13	87.38
d1hl9a2	350	Putative alpha-L-fucosidase, catalytic domain {The	86.71
d1jaka1	356	beta-N-acetylhexosaminidase {Streptomyces plicatus	86.07
d2je8a5	348	Five-domain beta-mannosidase, domain 3 {Bacteroide	81.39

>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Isomaltulose synthase PalI
species: Klebsiella sp., lx3 [TaxId: 576]

Probab=100.00  E-value=9.1e-40  Score=293.64  Aligned_cols=159  Identities=37%  Similarity=0.756  Sum_probs=141.5

Q ss_pred             CCccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHH
Q psy8670          34 PLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKD  113 (224)
Q Consensus        34 ~~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~  113 (224)
                      .|+||+++|||||++++|+++++++.|||+|++++| +|||+||||+|||+||++++..+|||++.||++|||+|||++|
T Consensus         2 ~P~W~~~~viYei~~~~F~d~~~~~~Gd~~Gi~~kL-dyLk~LGv~~I~L~Pi~~~~~~~~GY~~~d~~~vd~~~Gt~~d   80 (478)
T d1m53a2           2 YPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKL-DYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMED   80 (478)
T ss_dssp             CCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTH-HHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHH
T ss_pred             CCcccccCeEEEEecchhcCCCCCCccCHHHHHHhh-HHHHHcCCCEEEECCCCCCCCCCCCcCccCCCCcCcccCCHHH
Confidence            589999999999999999999999999999999999 9999999999999999999878899999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC-CCCccccccchhcccCCC------------------cceeec
Q psy8670         114 FETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN-IPPYKCASLLARLHDLGV------------------GAVWIS  174 (224)
Q Consensus       114 ~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~-~~~~~~~f~w~~~~~lG~------------------~~~w~~  174 (224)
                      |++||++||++||+||+|+|+||++.+|+||+..... ..++.++|.|.++.....                  ...++.
T Consensus        81 f~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (478)
T d1m53a2          81 FDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQYYL  160 (478)
T ss_dssp             HHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSSCSSCCBCTTSSBSEEECTTTCCEEE
T ss_pred             HHHHHHHHHHCCCEEEeccccccccccCchhhhcccCCCCCccccccccCCCcCCCCccccccCCCCccccccccCcccc
Confidence            9999999999999999999999999999999988754 678888888877543211                  223344


Q ss_pred             ccccCCCCCCCCcchhhHH
Q psy8670         175 PIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       175 p~f~~~~~dlny~n~d~~~  193 (224)
                      ..|...++++|+.++++++
T Consensus       161 ~~~~~~~~dln~~~~~V~~  179 (478)
T d1m53a2         161 HYFARQQPDLNWDNPKVRE  179 (478)
T ss_dssp             CSSCTTCCBBCTTSHHHHH
T ss_pred             cCcCCCCCcccchhHHHHH
Confidence            4566678999999999876

>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Oligo-1,6, glucosidase
species: Bacillus cereus [TaxId: 1396]

Probab=100.00  E-value=3.6e-39  Score=289.76  Aligned_cols=159  Identities=37%  Similarity=0.763  Sum_probs=141.4

Q ss_pred             CCccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHH
Q psy8670          34 PLEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKD  113 (224)
Q Consensus        34 ~~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~  113 (224)
                      .++||+++|||||++++|+++++++.|||+|++++| +|||+||||+|||+||++++..+|||++.||++|||+|||++|
T Consensus         2 ~~~W~~~~viYei~~~~F~d~~~~~~Gd~~gi~~kL-dYLk~LGv~~I~l~Pi~~~~~~~~GY~~~d~~~vd~~~Gt~~d   80 (479)
T d1uoka2           2 EKQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKL-DYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMED   80 (479)
T ss_dssp             CCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHTTH-HHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHH
T ss_pred             CchhhccCeEEEEEcchhcCCCCCCCcCHHHHHHhh-HHHHHcCCCEEEECCCcCCCCCCCCcCccccCCcCcccCCHHH
Confidence            368999999999999999999999999999999999 9999999999999999999877899999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC-CCCccccccchhcccCC------------------Ccceeec
Q psy8670         114 FETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN-IPPYKCASLLARLHDLG------------------VGAVWIS  174 (224)
Q Consensus       114 ~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~-~~~~~~~f~w~~~~~lG------------------~~~~w~~  174 (224)
                      |++||++||++||+||+|+|+||++.+++||+++... ..++.++|+|.+..+..                  ....++.
T Consensus        81 f~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (479)
T d1uoka2          81 WDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDEYYL  160 (479)
T ss_dssp             HHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSSCSSCBBCTTSSBSEEEETTTTEEEE
T ss_pred             HHHHHHHHHHCCCEEEecccccccccccchhhhhhhccCCccccceeccccccCcCcCCccccCCCCccccccccCccee
Confidence            9999999999999999999999999999999998865 56778888776533211                  1234555


Q ss_pred             ccccCCCCCCCCcchhhHH
Q psy8670         175 PIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       175 p~f~~~~~dlny~n~d~~~  193 (224)
                      ..|...++++|+.++++++
T Consensus       161 ~~~~~~~~dln~~~~~v~~  179 (479)
T d1uoka2         161 HLFSKKQPDLNWDNEKVRQ  179 (479)
T ss_dssp             CSSCTTSCBBCTTSHHHHH
T ss_pred             cccCCCccccccCCHHHHH
Confidence            5667778999999999876

>d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]

Probab=100.00  E-value=3.3e-37  Score=269.49  Aligned_cols=167  Identities=30%  Similarity=0.555  Sum_probs=138.1

Q ss_pred             CCCccCCCceEEEEecccccCcCCCC-------------------CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCC
Q psy8670          33 EPLEWWQTSVFYHLYPRSFKDSNGDG-------------------VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMAD   93 (224)
Q Consensus        33 ~~~~w~~~~viY~i~~~~f~~~~~~~-------------------~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~   93 (224)
                      .||+||+++|||||++++|.++++.+                   .|||+|++++| +|||+||||+|||+||+++.. +
T Consensus         2 ~~p~W~~~~v~Y~i~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~~gi~~kL-dylk~LGv~~i~l~Pi~~~~~-~   79 (382)
T d1ea9c3           2 QPPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHL-DHLSKLGVNAVYFTPLFKATT-N   79 (382)
T ss_dssp             CCCTHHHHCCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTH-HHHHHHTCSEEEECCCSSCSS-S
T ss_pred             CCCccccCCeEEEEEcchhcCCCCCCCccCcccccccCCCcCccCCcCHHHHHHhh-HHHHhCCCCEEEeCCCccCCC-C
Confidence            35799999999999999999876543                   49999999999 999999999999999999874 6


Q ss_pred             CCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC--CCCccccccchhccc--CCCc
Q psy8670          94 FGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN--IPPYKCASLLARLHD--LGVG  169 (224)
Q Consensus        94 ~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~--~~~~~~~f~w~~~~~--lG~~  169 (224)
                      +||++.||++|||+|||++||++||++||++||+||+|+|+||++.+++|+.+....  ...+.+||.+.....  ....
T Consensus        80 ~gY~~~~~~~id~~~Gt~~df~~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (382)
T d1ea9c3          80 HKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGI  159 (382)
T ss_dssp             STTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTHHHHHHHTTTTTCTTTTSSCBCSSSCCCTTSC
T ss_pred             CCCCcccccccccccCCHHHHHHHHHHHHhhcceEEEeeecccccccCcchhhhhhcCCcccccccccccccccccccCc
Confidence            999999999999999999999999999999999999999999999999999988854  456788887554321  1122


Q ss_pred             ceeecccccCCCCCCCCcchhhHH--HHHHHhhc
Q psy8670         170 AVWISPIFKSPMADFGYDISDYLR--IKILLDFV  201 (224)
Q Consensus       170 ~~w~~p~f~~~~~dlny~n~d~~~--i~ii~d~v  201 (224)
                      ..|....+...++++||.++++++  ++++..++
T Consensus       160 ~~~~~~~~~~~~~d~n~~~~~v~~~l~~~~~~w~  193 (382)
T d1ea9c3         160 PTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWI  193 (382)
T ss_dssp             CSBCBSSSCTTSBBCCTTSHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCccccccHHHHHHHHHHHhhcc
Confidence            234444455668999999999876  24444433

>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Neopullulanase, central domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=4.2e-37  Score=269.39  Aligned_cols=160  Identities=30%  Similarity=0.549  Sum_probs=135.3

Q ss_pred             CCCCccCCCceEEEEecccccCcCCCC-------------------CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCC
Q psy8670          32 QEPLEWWQTSVFYHLYPRSFKDSNGDG-------------------VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA   92 (224)
Q Consensus        32 ~~~~~w~~~~viY~i~~~~f~~~~~~~-------------------~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~   92 (224)
                      ..+|+||+++|||||++++|+++++++                   .|+|+|++++| +||++||||+|||+||++++. 
T Consensus         3 ~~~P~w~~~~viY~v~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kl-dyl~~LGv~~i~L~Pi~~~~~-   80 (382)
T d1j0ha3           3 FEAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHL-DYLVDLGITGIYLTPIFRSPS-   80 (382)
T ss_dssp             CCCCGGGGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTH-HHHHHHTCCEEEECCCEECSS-
T ss_pred             CCCCcchhCCEEEEEEcchhcCCCCCCCccccccccccCCccCccCCcCHHHHHHhH-HHHHHcCCCEEEeCCCCcCCc-
Confidence            356899999999999999999876442                   28999999999 999999999999999999874 


Q ss_pred             CCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC--CCCccccccchhccc-CCCc
Q psy8670          93 DFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN--IPPYKCASLLARLHD-LGVG  169 (224)
Q Consensus        93 ~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~--~~~~~~~f~w~~~~~-lG~~  169 (224)
                      ++||++.||++|||+|||+++|++||++||++||+||+|+|+||++.+|+|++.....  ...+.+||.+..... ....
T Consensus        81 ~~gy~~~d~~~vd~~~Gt~~~~~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (382)
T d1j0ha3          81 NHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPR  160 (382)
T ss_dssp             SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSS
T ss_pred             ccCCCcccccccCCCCCCHHHHHHHHHHhhhccceEEEEeeecccccccccchhhhccCCccccCCcccccccccccccc
Confidence            6999999999999999999999999999999999999999999999999999988743  457888887554321 1222


Q ss_pred             ceeecccccCCCCCCCCcchhhHH
Q psy8670         170 AVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       170 ~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      ..+....+...++++|+.|+++++
T Consensus       161 ~~~~~~~~~~~~~dln~~n~~vr~  184 (382)
T d1j0ha3         161 PNYDTFAFVPQMPKLNTANPEVKR  184 (382)
T ss_dssp             CSBCBSTTCTTSBBBCTTSHHHHH
T ss_pred             ccccccccCCCCcccccChHHHHH
Confidence            333333455678999999999887

>d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]

Probab=100.00  E-value=4.4e-37  Score=268.99  Aligned_cols=159  Identities=32%  Similarity=0.554  Sum_probs=134.3

Q ss_pred             CCCccCCCceEEEEecccccCcCCCC--------------------CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCC
Q psy8670          33 EPLEWWQTSVFYHLYPRSFKDSNGDG--------------------VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA   92 (224)
Q Consensus        33 ~~~~w~~~~viY~i~~~~f~~~~~~~--------------------~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~   92 (224)
                      ++|+||+++||||+++++|+++++++                    .|||+|++++| +|||+||||+|||+||++++. 
T Consensus         3 ~~P~w~~~~viY~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kL-dyl~~lGi~~I~l~Pv~~~~~-   80 (382)
T d1wzla3           3 TTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRL-PYLEELGVTALYFTPIFASPS-   80 (382)
T ss_dssp             CCCSGGGGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTH-HHHHHHTCCEEEECCCEECSS-
T ss_pred             CCCccccCCEEEEEEcchhcCCCCCCCCccccccccccccccCCCCCcCHHHHHHhh-HHHHHCCCCEEEECCcCCCCc-
Confidence            56889999999999999998765432                    39999999999 999999999999999999874 


Q ss_pred             CCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC--CCCccccccchhcccCCCc-
Q psy8670          93 DFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN--IPPYKCASLLARLHDLGVG-  169 (224)
Q Consensus        93 ~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~--~~~~~~~f~w~~~~~lG~~-  169 (224)
                      ++||++.||+++||+|||+++|++||++||++||+||+|+|+||++.+++|+++....  ...+.+||.+.+....+.. 
T Consensus        81 ~~gY~~~~~~~vd~~~Gt~~d~~~lv~~~H~~Gi~vilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (382)
T d1wzla3          81 HHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR  160 (382)
T ss_dssp             SSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSC
T ss_pred             ccCCccccccccccCCCCHHHHHHHHHHHHhcccceEeeeeecccccccccccchhhcCccccccccccccccccccCCC
Confidence            6999999999999999999999999999999999999999999999999999988743  5678889987664332221 


Q ss_pred             -ceeecccccCCCCCCCCcchhhHH
Q psy8670         170 -AVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       170 -~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                       .......+...++|+|++|+.+++
T Consensus       161 ~~~~~~~~~~~~~~dLn~~n~~v~~  185 (382)
T d1wzla3         161 TNYETFAVQVPAMPKLRTENPEVKE  185 (382)
T ss_dssp             CSBCBSSSSCTTCBBBCTTSHHHHH
T ss_pred             CcccccccccccCCccCCCCHHHHH
Confidence             122223344567999999999876

>d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 4-alpha-glucanotransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.6e-37  Score=267.88  Aligned_cols=151  Identities=33%  Similarity=0.622  Sum_probs=134.3

Q ss_pred             ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHH
Q psy8670          41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKER  120 (224)
Q Consensus        41 ~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~  120 (224)
                      .|+|||++++|+++++++.|+|+|++++| +||++||||+|||+||+++.. +|||++.||++|||+|||++||++||++
T Consensus         1 ~v~Yei~~~~F~d~~~dg~Gd~~gi~~kL-dyl~~LGv~~I~l~Pi~~~~~-~~GY~~~d~~~vd~~~Gt~~d~~~lv~~   78 (391)
T d1lwha2           1 MIGYQIYVRSFRDGNLDGVGDFRGLKNAV-SYLKELGIDFVWLMPVFSSIS-FHGYDVVDFYSFKAEYGSEREFKEMIEA   78 (391)
T ss_dssp             CCEEEECGGGTCCSSSSSSCCHHHHHHTH-HHHHHTTCSEEEECCCEECSS-SSCCSCSEEEEECGGGCCHHHHHHHHHH
T ss_pred             CEEEEEccccccCCCCCCccCHHHHHHhh-HHHHHcCCCEEEECCCCCCCC-CCCCCccCCCCcCcccCCHHHHHHHHHH
Confidence            48999999999999999999999999999 999999999999999999874 5999999999999999999999999999


Q ss_pred             HHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCC---------------CcceeecccccCCCCCCC
Q psy8670         121 LHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLG---------------VGAVWISPIFKSPMADFG  185 (224)
Q Consensus       121 ~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG---------------~~~~w~~p~f~~~~~dln  185 (224)
                      ||++||+||+|+|+||++.+++|++...+....+.+++.|.+.....               .++.++...+...++|+|
T Consensus        79 ~h~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln  158 (391)
T d1lwha2          79 FHDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLN  158 (391)
T ss_dssp             HHHTTCEEEEEECTTBCCTTSHHHHHHHTTCHHHHTTBCBCCTTCCTTCBCSSSCCBCEEECTTSCEEECTTCTTSCBBC
T ss_pred             HHhcCCEEeecccccccccccccccccccCCccccccceecCCccccCccccCCCCccccccCCCcccccccCCcCCccc
Confidence            99999999999999999999999999988888888888876532211               123455566677789999


Q ss_pred             CcchhhHH
Q psy8670         186 YDISDYLR  193 (224)
Q Consensus       186 y~n~d~~~  193 (224)
                      +.|+++++
T Consensus       159 ~~n~~v~~  166 (391)
T d1lwha2         159 YDNPQVFD  166 (391)
T ss_dssp             TTSHHHHH
T ss_pred             cccchhhH
Confidence            99999877

>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Halothermothrix orenii [TaxId: 31909]

Probab=100.00  E-value=3.4e-35  Score=257.63  Aligned_cols=155  Identities=40%  Similarity=0.707  Sum_probs=131.8

Q ss_pred             cCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHH--------HHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCC
Q psy8670          37 WWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHL--------HDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLF  108 (224)
Q Consensus        37 w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l--------~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~  108 (224)
                      |-+++|||||++++|+++++++.|||+|++++| +||        |+||||+|||+||++++. +|||++.||++|||+|
T Consensus         1 ~~k~~v~Y~~~~~~f~d~~~~~~Gd~~g~~~kL-dyl~~~~~~~i~~LGv~~i~l~Pi~~~~~-~~GY~~~d~~~vd~~~   78 (409)
T d1wzaa2           1 FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKL-DYLNDGDPETIADLGVNGIWLMPIFKSPS-YHGYDVTDYYKINPDY   78 (409)
T ss_dssp             CCCCCCEEEECGGGSCCSSSSSCCCHHHHHHTH-HHHCCSCTTCCSSCCCSEEEECCCEECSS-SSCCSCSEEEEECGGG
T ss_pred             CCCccEEEEEecchhcCCCCCCCcCHHHHHHhc-cccccccccHHhhcCccEEEECCCCCCCC-CCCcCcccCCCcCccc
Confidence            346799999999999999999999999999999 998        799999999999999875 5999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC-CCCccccccchhcccCC------C-------cceeec
Q psy8670         109 GDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN-IPPYKCASLLARLHDLG------V-------GAVWIS  174 (224)
Q Consensus       109 G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~-~~~~~~~f~w~~~~~lG------~-------~~~w~~  174 (224)
                      ||.+||++||++||++||+||+|+|+||++.+++|+...... ...+.+||.|.......      .       ....+.
T Consensus        79 G~~~dlk~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (409)
T d1wzaa2          79 GTLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYY  158 (409)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCCBCSSSCBCSEEEETTEEEE
T ss_pred             CCHHHHHHHHHHHHhcCCEEEEecccccccccCcchhhhhccccccccccccccccccccCccccCCCcccccccccccc
Confidence            999999999999999999999999999999999999988754 55677888765432211      0       112222


Q ss_pred             ccccCCCCCCCCcchhhHH
Q psy8670         175 PIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       175 p~f~~~~~dlny~n~d~~~  193 (224)
                      ..+...++|+|+.|+++++
T Consensus       159 ~~~~~~~~dln~~n~~vr~  177 (409)
T d1wzaa2         159 GYFWSGMPDLNYNNPEVQE  177 (409)
T ss_dssp             CSSCTTSCBBCTTSHHHHH
T ss_pred             ccCCCCCcccccccHHHHH
Confidence            3345567999999999886

>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Isoamylase, central domain
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=100.00  E-value=7.8e-36  Score=267.90  Aligned_cols=159  Identities=22%  Similarity=0.252  Sum_probs=130.3

Q ss_pred             CCCCCCccCCCceEEEEecccccCcCC----CCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-------------C
Q psy8670          30 PIQEPLEWWQTSVFYHLYPRSFKDSNG----DGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-------------A   92 (224)
Q Consensus        30 ~~~~~~~w~~~~viY~i~~~~f~~~~~----~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-------------~   92 (224)
                      .-..|+.|++++||||||+++|+++++    ++.|||+|++++| +||++||||+|||+||++++.             .
T Consensus         6 ~~~~~~~~~~d~viYei~v~~f~~~~~~~~~~~~Gd~~Gi~~kL-dyl~~LGvnaiwl~Pi~~~~~~~~~~~~~~~~~~~   84 (475)
T d1bf2a3           6 TGTKPTRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKA-SYLASLGVTAVEFLPVQETQNDANDVVPNSDANQN   84 (475)
T ss_dssp             CCCCCCCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHTH-HHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCC
T ss_pred             CCCCCCCCCcceEEEEEEhhHhccCCCCCCccccCCHHHHHhhh-HHHHHcCCCEEEeCCCCcCCCcccccccccccCcC
Confidence            334667789999999999999998874    4569999999999 999999999999999998743             2


Q ss_pred             CCCCCccCCCCcCCCC-------CCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhccc
Q psy8670          93 DFGYDISDYLSFEPLF-------GDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHD  165 (224)
Q Consensus        93 ~~gY~~~d~~~v~~~~-------G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~  165 (224)
                      .|||++.||++|||+|       ||.+||++||++||++||+||+|+|+||++.+|+|+.+    ..++.+++.|.+...
T Consensus        85 y~GY~~~d~~~vdp~y~~~~~~~Gt~~d~~~LV~~aH~~GIrVilD~V~NH~~~~~~~~~~----~~~~~~~~~~~~~~~  160 (475)
T d1bf2a3          85 YWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSS----DPTTATIYSWRGLDN  160 (475)
T ss_dssp             CSCCCBSCSSCBCGGGCSCCSTTHHHHHHHHHHHHHHHTTCEEEEEECCSSCTTCSBSSSS----CSSCBBCSSHHHHHH
T ss_pred             CCCCCcccCCCcCcccccCCCCCCCHHHHHHHHHHHHhcCcEEEEEeccccccCCCccccc----CCCcCccccccCccc
Confidence            3799999999999999       99999999999999999999999999999999999963    345666666544211


Q ss_pred             ----CCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         166 ----LGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       166 ----lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                          ....+.++...+...++++|+.|+++++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~  192 (475)
T d1bf2a3         161 ATYYELTSGNQYFYDNTGIGANFNTYNTVAQN  192 (475)
T ss_dssp             HHHBCBCTTSSSBCCSSSSSCCBCTTSHHHHH
T ss_pred             ccccccCCCccccccCCCccCccchhhhHHHH
Confidence                1112233344455667999999999886

>d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclomaltodextrinase, central domain
species: Flavobacterium sp. 92 [TaxId: 197856]

Probab=100.00  E-value=1.8e-35  Score=261.75  Aligned_cols=154  Identities=20%  Similarity=0.366  Sum_probs=123.1

Q ss_pred             CCccCCCceEEEEecccccCcC-------------------CCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC---
Q psy8670          34 PLEWWQTSVFYHLYPRSFKDSN-------------------GDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM---   91 (224)
Q Consensus        34 ~~~w~~~~viY~i~~~~f~~~~-------------------~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~---   91 (224)
                      .+.|++++|||||++++|.+++                   +..+|||+|++++| +|||+||||+|||+||++++.   
T Consensus         5 ~~~~~~~~viY~i~~~~F~~gd~~nd~~~~~~~~~~~~~~~~~~gGd~~Gl~~kL-dyl~~LGv~~I~l~Pi~~~~~~~~   83 (422)
T d1h3ga3           5 RQGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHL-DYIAGLGFTQLWPTPLVENDAAAY   83 (422)
T ss_dssp             CCCCCTTCCEEEECHHHHCCSCGGGSSCTTCSSCCCTTSTTSCCCCCHHHHHHTH-HHHHHHTCCEEEECCCEECCCSSC
T ss_pred             cCCCCCCCcEEEeChhhccCCCCCcCccCCccccccccccCCCCCcCHHHHHHhH-HHHHHCCCCEEEeCCcccCCCCCC
Confidence            4569999999999999998765                   23359999999999 999999999999999998643   


Q ss_pred             CCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccC-----
Q psy8670          92 ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDL-----  166 (224)
Q Consensus        92 ~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~l-----  166 (224)
                      ..+||++.||++|||+|||++||++||++||++||+||+|+|+||++.+|+|+++..     +.+++.+......     
T Consensus        84 ~~~GY~~~d~~~vd~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  158 (422)
T d1h3ga3          84 SYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLP-----TPDWINYGGKFVPTQHHR  158 (422)
T ss_dssp             GGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSGGGGSCS-----STTSBSCCSSCCBCCCCG
T ss_pred             CCCCCCccccCCcccccCCHHHHHHHHHHHHHhCccccccCccccccccchhhcccc-----cccccccccccccccccc
Confidence            458999999999999999999999999999999999999999999999999997432     2233322111000     


Q ss_pred             ----------CCcceeecccccCCCCCCCCcchhhHH
Q psy8670         167 ----------GVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       167 ----------G~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                                .....|+...+...++++|+.|+++++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~vr~  195 (422)
T d1h3ga3         159 VAVQDPYAAQADSENFTKGWFVEGMPDLNQTNPLVAN  195 (422)
T ss_dssp             GGGSCTTCCHHHHHHHHHSBSSTTSCBBCTTSHHHHH
T ss_pred             ccccccccccCcccceeecccccCccccccccHHHHH
Confidence                      001223334455678999999999887

>d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=100.00  E-value=4.5e-35  Score=259.09  Aligned_cols=117  Identities=31%  Similarity=0.510  Sum_probs=104.6

Q ss_pred             CCccCCCceEEEEecccccCcCCCC---------------------CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-
Q psy8670          34 PLEWWQTSVFYHLYPRSFKDSNGDG---------------------VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-   91 (224)
Q Consensus        34 ~~~w~~~~viY~i~~~~f~~~~~~~---------------------~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-   91 (224)
                      .+.||+++|||||++++|.++++.+                     +|||+|++++| +|||+||||+|||+||+++.. 
T Consensus         2 ~~~~~~~~v~Y~i~~drF~~gd~~~~~~~~~~~~~~~~~~~~~~~~gGd~~gi~~kL-dyl~~LGv~~I~L~Pi~~~~~~   80 (407)
T d1qhoa4           2 SSASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKL-PYLKQLGVTTIWLSPVLDNLDT   80 (407)
T ss_dssp             TTSCCTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHTH-HHHHHHTCCEEEECCCEEECSS
T ss_pred             CchhhcCCEEEEechhhhcCCCCCCCcccccccccCCcccccCccCCcCHHHHHHHH-HHHHHcCCCEEEeCccccCCcc
Confidence            4689999999999999998765321                     38999999999 999999999999999998632 


Q ss_pred             -------CCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCC
Q psy8670          92 -------ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANI  151 (224)
Q Consensus        92 -------~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~  151 (224)
                             .++||++.||++|||+|||++||++||++||++||+||+|+|+||+|..++|+....+..
T Consensus        81 ~~~~~~~~~~gY~~~d~~~id~~~Gt~~d~k~Lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~  147 (407)
T d1qhoa4          81 LAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGG  147 (407)
T ss_dssp             CSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTT
T ss_pred             cCCCCCCCCCceeeeecCCCCCCCCCHHHHHHHHHHhhhcccceeeccccccccCCccccccccccC
Confidence                   348999999999999999999999999999999999999999999999999987665443

>d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]

Probab=100.00  E-value=1.1e-34  Score=257.48  Aligned_cols=155  Identities=27%  Similarity=0.498  Sum_probs=121.1

Q ss_pred             CCCccCCCceEEEEecccccCcCCCC------------------------------------CCCHHHHHHHHHHHHHH-
Q psy8670          33 EPLEWWQTSVFYHLYPRSFKDSNGDG------------------------------------VGDLKGMIEKLPEHLHD-   75 (224)
Q Consensus        33 ~~~~w~~~~viY~i~~~~f~~~~~~~------------------------------------~g~l~~~~~~l~~~l~~-   75 (224)
                      .+|+||+++|||||+|++|.++++++                                    +|||+||+++| +||++ 
T Consensus         3 ~~p~W~~~~viY~i~~drF~dgd~~nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGdl~Gi~~kL-dYl~~~   81 (432)
T d1ji1a3           3 KTPDWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFGGDLAGIDQKL-GYIKKT   81 (432)
T ss_dssp             CCCHHHHHCCEEEECGGGTCCSCGGGCCCTTSCEETTEECEECCTTSCCSCCTTSCGGGEECCCCHHHHHHTH-HHHHTT
T ss_pred             CCCccccCCeEEEEeccccCCCCCccccccccccccCCccccccccccccccccccccccccCcCHHHHHHHh-hHHHhh
Confidence            56899999999999999998765321                                    49999999999 99987 


Q ss_pred             cCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcC----CEEEEecCCCCCCccchhHHhhhcC-
Q psy8670          76 LGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALG----IKILLDFVPNHTSNQHEWFKKSLAN-  150 (224)
Q Consensus        76 lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~g----i~vilD~v~nh~~~~~~w~~~~~~~-  150 (224)
                      ||||+|||+||++++. ++||++.||++|||+|||++||++||++||++|    |+||+|+|+||+|.+|+|+++.... 
T Consensus        82 LGv~~I~L~Pi~~~~~-~~GY~~~d~~~id~~~Gt~~d~~~lv~~~H~~g~~~~I~VilD~V~NH~s~~~~~~~~~~~~~  160 (432)
T d1ji1a3          82 LGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHPWFDKYNNFS  160 (432)
T ss_dssp             TCCCEEEESCCEECSS-SSCCSCSEEEEECTTTCCHHHHHHHHHHHHCSSSSSCCEEEEEECCSBCCTTSTTTCTTCCSS
T ss_pred             cCCCEEEeCCCCcCCC-CCCcccccccccCcccCCHHHHHHHHHHHHHhhhhcceeEeccccccccCCCchhHhhccCcc
Confidence            9999999999999874 699999999999999999999999999999987    7899999999999999999865432 


Q ss_pred             -----CCCccccccchhcccCCCcceeecccccCCCCCCCCcchhh
Q psy8670         151 -----IPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDY  191 (224)
Q Consensus       151 -----~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~  191 (224)
                           ..+...|+.....  ......|....+...++++||.|++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ln~~n~~~  204 (432)
T d1ji1a3         161 SQGAYESQSSPWYNYYTF--YTWPDSYASFLGFNSLPKLNYGNSGS  204 (432)
T ss_dssp             SCCTTTCTTCTTGGGBCE--EETTTEECEETTEEEEEBBBCCSTTC
T ss_pred             cccccccccccccccccc--cccccccccccccCccCccccCCCcH
Confidence                 1111122211110  01122334434445568999998763

>d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Thermoanaerobacterium [TaxId: 28895]

Probab=100.00  E-value=2.9e-34  Score=253.56  Aligned_cols=124  Identities=32%  Similarity=0.539  Sum_probs=107.4

Q ss_pred             CCCccCCCceEEEEecccccCcCCCC------------------CCCHHHHHHHHHH--HHHHcCCCeEEEcCcccC---
Q psy8670          33 EPLEWWQTSVFYHLYPRSFKDSNGDG------------------VGDLKGMIEKLPE--HLHDLGVGAVWISPIFKS---   89 (224)
Q Consensus        33 ~~~~w~~~~viY~i~~~~f~~~~~~~------------------~g~l~~~~~~l~~--~l~~lG~~~i~l~Pi~~~---   89 (224)
                      .++.+|+++|||||+|++|.++++++                  +|||+||+++| +  |||+||||+|||+||++.   
T Consensus         7 ~~~~~~~~~viY~i~~drF~~g~~~~d~~~~~~~~~~~~~~~~~gGdl~Gi~~kL-d~~YLk~LGv~~I~L~Pi~~~~~~   85 (406)
T d3bmva4           7 SNVVNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKI-NDGYLTGMGVTAIWIPQPVENIYA   85 (406)
T ss_dssp             TCTTCCTTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHHH-HTSTTGGGTCCEEEECCCEEECCC
T ss_pred             CCCCCCccCeEEEechhhccCCCCCCCCCCCccCCCCCccCccCCcCHHHHHHhc-CHHHHHHcCCCEEEECCccccccc
Confidence            44556999999999999998765332                  59999999999 9  999999999999999873   


Q ss_pred             ---------CCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCcccc
Q psy8670          90 ---------PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCA  157 (224)
Q Consensus        90 ---------~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~  157 (224)
                               +.+++||++.||++|||+|||++||++||++||++||+||+|+|+||++.+++|+.........+.++
T Consensus        86 ~~~~~~~~~~~~~~gY~~~d~~~vdp~~Gt~~dfk~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~  162 (406)
T d3bmva4          86 VLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNG  162 (406)
T ss_dssp             CEEETTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETT
T ss_pred             ccCCCCCCCChhhcCcccccccccCcccccHHHHHHHHHHHHhccccceeeeecccccccccchhhhcccCccccCC
Confidence                     33568999999999999999999999999999999999999999999999999988766544334333

>d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Amylosucrase
species: Neisseria polysaccharea [TaxId: 489]

Probab=100.00  E-value=7.4e-34  Score=262.27  Aligned_cols=153  Identities=30%  Similarity=0.519  Sum_probs=131.4

Q ss_pred             CCCccCC--CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC--CCCCCCCccCCCCcCCCC
Q psy8670          33 EPLEWWQ--TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYLSFEPLF  108 (224)
Q Consensus        33 ~~~~w~~--~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~--~~~~gY~~~d~~~v~~~~  108 (224)
                      ..+.|++  +.+.|+++++.|       +|||+|++++| +|||+||||+|||+|+++++  .+++||++.||++|||+|
T Consensus        88 ~~~~w~~~~~~~~~~~y~~~f-------gGDl~Gi~~kL-dYLk~LGVt~I~L~Pi~~~p~~~sd~GY~v~dy~~Vdp~l  159 (554)
T d1g5aa2          88 NNPDWILSNKQVGGVCYVDLF-------AGDLKGLKDKI-PYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPAL  159 (554)
T ss_dssp             TCGGGGGCTTCCEEEECHHHH-------HSSHHHHHTTH-HHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBCTTT
T ss_pred             hCCccccCcCceeEEEecccc-------CcCHHHHHHhh-HHHHHcCCCEEEECCCCCCCCCCCCCCcCcccCCCCCccc
Confidence            4577885  568999999999       59999999999 99999999999999999985  357999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCcccccc-chhccc--------------C-------
Q psy8670         109 GDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASL-LARLHD--------------L-------  166 (224)
Q Consensus       109 G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~-w~~~~~--------------l-------  166 (224)
                      ||++||++||++||++||+||+|+|+||||.+|+||+++..+...|.++|. |.+...              .       
T Consensus       160 Gt~edl~~Lv~~aH~rGI~VilD~V~NHts~~h~w~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  239 (554)
T d1g5aa2         160 GTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGGFSQ  239 (554)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCGGGTTSBCEESSSHHHHHHTTTCCCSSTTTCSTTEEE
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEECcCCCCCCccchhhhhccCCccccceEEcCCCCCCccccCCCcccCCCCCCcceee
Confidence            999999999999999999999999999999999999999988877777654 333110              0       


Q ss_pred             CCcceeecccccCCCCCCCCcchhhHH
Q psy8670         167 GVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       167 G~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      ..++.|+...|.+.++|+||.||++++
T Consensus       240 ~~~~~~~~~~f~~~~~dln~~np~V~~  266 (554)
T d1g5aa2         240 LEDGRWVWTTFNSFQWDLNYSNPWVFR  266 (554)
T ss_dssp             CTTSCEEECSSSTTEEEBCTTSHHHHH
T ss_pred             cCCCceeecccCCcccccccCCHHHHH
Confidence            013456767788888999999999987

>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]

Probab=100.00  E-value=4.7e-34  Score=251.25  Aligned_cols=156  Identities=21%  Similarity=0.349  Sum_probs=120.2

Q ss_pred             cCCCceEEEEecccccCcCCCCC------------CCHHHHHHHHHHHHHHcCCCeEEEcCcccCC-------CCCCCCC
Q psy8670          37 WWQTSVFYHLYPRSFKDSNGDGV------------GDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-------MADFGYD   97 (224)
Q Consensus        37 w~~~~viY~i~~~~f~~~~~~~~------------g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~-------~~~~gY~   97 (224)
                      .|++.+||||++++|.++++++.            |||+|++++| +|||+||||+|||+||+++.       ...+||+
T Consensus         5 ~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gGd~~gi~~~L-dyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~~gY~   83 (381)
T d2guya2           5 DWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKL-DYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYW   83 (381)
T ss_dssp             HHTTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTH-HHHHTTTCCEEEECCCEEECCCCBTTBCCTTSCS
T ss_pred             cccCCeEEEEEcchhcCCCCCCCCCCCCccCccCCcCHHHHHHhH-HHHHHCCCCEEEeCCCCCCCcccCCCCCCCCCcc
Confidence            36788999999999999887765            9999999999 99999999999999999863       2458999


Q ss_pred             ccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhccc-CC--C---cce
Q psy8670          98 ISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHD-LG--V---GAV  171 (224)
Q Consensus        98 ~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~-lG--~---~~~  171 (224)
                      +.||+++||+|||++||++||++||++||+||+|+|+||+|.+++|+........++.+...+..... .+  .   ...
T Consensus        84 ~~d~~~vd~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (381)
T d2guya2          84 QQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVED  163 (381)
T ss_dssp             EEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCCSGGGBCCSCBCCCTTCHHHHHH
T ss_pred             cccccccccCCCCHHHHHHHHHHHHhhccceeeeccccccccccCcccccccccCCCCcccceeccccccccccccccce
Confidence            99999999999999999999999999999999999999999999998865533222222211111000 00  0   001


Q ss_pred             eecccccCCCCCCCCcchhhHH
Q psy8670         172 WISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       172 w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      ++...+...++++|+.++++++
T Consensus       164 ~~~~~~~~~~~dln~~n~~v~~  185 (381)
T d2guya2         164 CWLGDNTVSLPDLDTTKDVVKN  185 (381)
T ss_dssp             SBEECSSEEECBBCTTSHHHHH
T ss_pred             eeccCCccccchhccccHHHHH
Confidence            1111223346899999999886

>d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=100.00  E-value=1.4e-34  Score=263.02  Aligned_cols=123  Identities=22%  Similarity=0.345  Sum_probs=109.2

Q ss_pred             CCCCCCCCCccCCCceEEEEecccccCcCCCCCCCHHH-----------HHHHHHHHHHHcCCCeEEEcCcccCCCC---
Q psy8670          27 VDVPIQEPLEWWQTSVFYHLYPRSFKDSNGDGVGDLKG-----------MIEKLPEHLHDLGVGAVWISPIFKSPMA---   92 (224)
Q Consensus        27 ~~~~~~~~~~w~~~~viY~i~~~~f~~~~~~~~g~l~~-----------~~~~l~~~l~~lG~~~i~l~Pi~~~~~~---   92 (224)
                      .++.++.++.|++++||||||+++|+++++++.|+++|           ++++| +||++||||+|||+||++++..   
T Consensus         8 ~~~~~~~~~~~~~~~viYei~vr~F~d~~~d~~~~~~G~f~~~~~~~~~~i~~L-dyL~~LGVtaiwL~Pi~~~~~~d~~   86 (563)
T d2fhfa5           8 TMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHL-KQLSASGVTHIELLPVFDLATVNEF   86 (563)
T ss_dssp             CCSSCCSSHHHHHTCEEEEECHHHHHTTCTTSCGGGTTSGGGGGCTTSHHHHHH-HHHHHHTCCEEEESCCEEESSSCCC
T ss_pred             CCccccCCCCCHHHcEEEEecchhhhccCCCCccccCcChhhccccCcchhhhH-HHHHHcCCCEEEeCCcccCCccccc
Confidence            34455677889999999999999999999998876666           89999 9999999999999999886432   


Q ss_pred             -------------------------------------------------------------------CCCCCccCCCCcC
Q psy8670          93 -------------------------------------------------------------------DFGYDISDYLSFE  105 (224)
Q Consensus        93 -------------------------------------------------------------------~~gY~~~d~~~v~  105 (224)
                                                                                         +|||+|.||++|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wGYdv~dy~~i~  166 (563)
T d2fhfa5          87 SDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPE  166 (563)
T ss_dssp             GGGCCCTTSBHHHHHHHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEEEEEEEC
T ss_pred             cccccccccccccccccccccchhhhhhhccccchhhhhhhcccccccchhhhhhcccccccccCcCCCCCChhhccccc
Confidence                                                                               3699999999999


Q ss_pred             CCCCC-------HHHHHHHHHHH-HHcCCEEEEecCCCCCCccchhHHhhhcC
Q psy8670         106 PLFGD-------LKDFETLKERL-HALGIKILLDFVPNHTSNQHEWFKKSLAN  150 (224)
Q Consensus       106 ~~~G~-------~~~~~~lv~~~-h~~gi~vilD~v~nh~~~~~~w~~~~~~~  150 (224)
                      |+|||       .+|||+||++| |++|||||+|+|+||||.+|+||+.+...
T Consensus       167 p~~Gt~~d~~~~l~Efk~lV~a~~H~rGIkVIlD~V~NHts~~h~wf~~~~~~  219 (563)
T d2fhfa5         167 GSYATDPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLD  219 (563)
T ss_dssp             STTSSCCSTTHHHHHHHHHHHHHHHTSCCEEEEEECTTEESCCSSSCTTCCHH
T ss_pred             CccCcCcchhhHHHHHHHHHHHHhhccCceeeecCcccccCCCCCchhhcccC
Confidence            99999       78899999987 89999999999999999999999876544

>d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltosyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.3e-34  Score=259.77  Aligned_cols=125  Identities=22%  Similarity=0.440  Sum_probs=113.0

Q ss_pred             CCCCccCCCceEEEEecccccCcCCCCC--------------CCHHHHHHHHHHHHHHcCCCeEEEcCcccCC------C
Q psy8670          32 QEPLEWWQTSVFYHLYPRSFKDSNGDGV--------------GDLKGMIEKLPEHLHDLGVGAVWISPIFKSP------M   91 (224)
Q Consensus        32 ~~~~~w~~~~viY~i~~~~f~~~~~~~~--------------g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~------~   91 (224)
                      ..+|+||+++||||+|+++|+++++++.              |||+|++++| +|||+||||+|||+||++.+      .
T Consensus        75 ~~~p~w~~~~viYei~v~~F~~~~~~g~~~~~~~~~~g~~~~Gd~~Gi~~kL-dYLk~LGvtaI~L~Pi~~~~~~~~~~~  153 (572)
T d1gjwa2          75 EKTPDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLL-PFVKSLGADAIYLLPVSRMSDLFKKGD  153 (572)
T ss_dssp             CCSGGGGGGCCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHTH-HHHHHHTCCEEEECCCEEECCSSCSSS
T ss_pred             CCCCccccCcEEEEEechhhcCCCCCCCcccccCcccCccCCCCHHHHHHhh-HHHHHcCCCEEEeCCcccCccccCCCC
Confidence            4568999999999999999998876543              8999999999 99999999999999999753      3


Q ss_pred             CCCCCCccCCCCcCCC--------CCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhc
Q psy8670          92 ADFGYDISDYLSFEPL--------FGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARL  163 (224)
Q Consensus        92 ~~~gY~~~d~~~v~~~--------~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~  163 (224)
                      .+|||++.||+++||+        |||++||++||++||++||+||+|+|+|||+.+|+|++       .+++||.|.+.
T Consensus       154 ~~~GY~~~dy~~~dp~~~~~~~~~~Gt~~dfk~lV~~~H~~GI~VIlDvV~NHts~~~~~~~-------~~~~~~~~~~~  226 (572)
T d1gjwa2         154 APSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIR-------EHPDWFYWIKV  226 (572)
T ss_dssp             SCCTTSEEEEEEECGGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEEECTTEEETTCGGGT-------TCGGGSCCEEG
T ss_pred             CCCCCCccCCCCCCcccccccccCCCCHHHHHHHHHHHHhcCcEEEEEeeecccccCCHHHH-------hCccccccccc
Confidence            5689999999999986        79999999999999999999999999999999999998       68889887654


Q ss_pred             c
Q psy8670         164 H  164 (224)
Q Consensus       164 ~  164 (224)
                      .
T Consensus       227 ~  227 (572)
T d1gjwa2         227 E  227 (572)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=2.4e-33  Score=248.66  Aligned_cols=130  Identities=24%  Similarity=0.366  Sum_probs=111.7

Q ss_pred             CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC-CCCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-MADFGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~-~~~~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      |+++||||+++++|++     .|||+|++++| +|||+||||+|||+||++.+ ..+|||++.||++|||+||+++||++
T Consensus        14 ~~~~viYe~~~~~f~~-----~Gd~~g~~~~l-dyl~~LGv~~i~L~Pv~~~~~~~~~GY~~~d~~~vdp~~G~~~d~~~   87 (420)
T d2bhua3          14 LADCVFYEVHVGTFTP-----EGTYRAAAEKL-PYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLMA   87 (420)
T ss_dssp             GGGCCEEEECHHHHSS-----SCSHHHHHHTH-HHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGCCHHHHHH
T ss_pred             ccccEEEEEehhhcCC-----CCCHHHHHHhH-HHHHHcCCCEEEeCCCCcCCCCCCCCCCcccCCCcCcccCCHHHHHH
Confidence            8899999999999987     49999999999 99999999999999999864 35689999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCcceeecccccCCCCCCCCcchhhHH
Q psy8670         117 LKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      ||++||++||+||+|+|+||++.+|+|+.+..      ..+|. ..         +    .....+|+||+||++++
T Consensus        88 lv~~aH~~gi~VilD~V~NH~~~~~~~~~~~~------~~~~~-~~---------~----~~~~~~dlN~~np~v~~  144 (420)
T d2bhua3          88 LVDAAHRLGLGVFLDVVYNHFGPSGNYLSSYA------PSYFT-DR---------F----SSAWGMGLDYAEPHMRR  144 (420)
T ss_dssp             HHHHHHHTTCEEEEEECCSCCCSSSCCHHHHC------GGGEE-EE---------E----ECSSSEEECTTSHHHHH
T ss_pred             HHHHHHhccccccccccccccCCCCccccccc------ccccc-cc---------c----cccccccccccChHHHH
Confidence            99999999999999999999999999997432      11121 00         0    11124799999999887

>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=99.98  E-value=1.9e-32  Score=240.46  Aligned_cols=103  Identities=30%  Similarity=0.543  Sum_probs=97.2

Q ss_pred             CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHH
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFET  116 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~  116 (224)
                      .++.||||+|+++|+++     |+|+|++++| +||++||||+|||+||++++. .+|||++.||++|||+|||++||++
T Consensus         9 ~~~~viYe~~v~~f~~~-----Gd~~gi~~~l-dyi~~LGv~~i~l~Pv~~~~~~~~~GY~~~d~~~vd~~~Gt~~dlk~   82 (400)
T d1eh9a3           9 KEDLIIYEIHVGTFTPE-----GTFEGVIRKL-DYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRK   82 (400)
T ss_dssp             SSSCCEEEECTTTSSSS-----CSHHHHHHTH-HHHHHHTCCEEEECCCBCCSSSCCCSTTCCCTTCBCSTTCCHHHHHH
T ss_pred             CcCeEEEEEehhhhCCC-----CCHHHHHHHh-HHHHHcCCCEEEeCCcCcCCCCCCCCCCCCCCCCcCcccCCHHHHHH
Confidence            44799999999999873     9999999999 999999999999999998753 5799999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEecCCCCCCccchhHHh
Q psy8670         117 LKERLHALGIKILLDFVPNHTSNQHEWFKK  146 (224)
Q Consensus       117 lv~~~h~~gi~vilD~v~nh~~~~~~w~~~  146 (224)
                      ||++||++||+||+|+|+||+|.+|+|+.+
T Consensus        83 lv~~~h~~gi~VilD~V~NH~s~~~~~~~~  112 (400)
T d1eh9a3          83 LVDEAHKKGLGVILDVVYNHVGPEGNYMVK  112 (400)
T ss_dssp             HHHHHHHTTCEEEEEECCSCCCSSSCCHHH
T ss_pred             HHHHHHhcCCceeeecccccccCCCcchhh
Confidence            999999999999999999999999999983

>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 1,4-alpha-glucan branching enzyme, central domain
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=1.1e-32  Score=238.65  Aligned_cols=106  Identities=20%  Similarity=0.368  Sum_probs=99.2

Q ss_pred             ceEEEEeccccc-CcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHHHH
Q psy8670          41 SVFYHLYPRSFK-DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFETLK  118 (224)
Q Consensus        41 ~viY~i~~~~f~-~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~lv  118 (224)
                      .+|||+|+++|+ ++++++.|+|+|++++|||||++||||+|||+||++++. .+|||++.||++|||+|||++||++||
T Consensus        17 ~~iYe~~~~~f~~~~~~~~~g~~~gi~~klidyl~~LGv~~iwl~Pi~~~~~~~~hGY~~~d~~~vdp~~Gt~~d~~~LV   96 (396)
T d1m7xa3          17 ISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFI   96 (396)
T ss_dssp             CEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEECGGGSCHHHHHHHH
T ss_pred             cEEEEEccCccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcCcCcCCCcCcccCCHHHHHHHH
Confidence            589999999996 677888899999999966999999999999999999864 468999999999999999999999999


Q ss_pred             HHHHHcCCEEEEecCCCCCCccchhHHh
Q psy8670         119 ERLHALGIKILLDFVPNHTSNQHEWFKK  146 (224)
Q Consensus       119 ~~~h~~gi~vilD~v~nh~~~~~~w~~~  146 (224)
                      ++||++||+||+|+|+||++.++.|+..
T Consensus        97 ~~aH~~gi~VilD~V~NH~~~~~~~~~~  124 (396)
T d1m7xa3          97 DAAHAAGLNVILDWVPGHFPTDDFALAE  124 (396)
T ss_dssp             HHHHHTTCEEEEEECTTSCCCSTTSSTT
T ss_pred             HHHhhhhhhhhhcccccccCCccccccc
Confidence            9999999999999999999999999873

>d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus niger, acid amylase [TaxId: 5061]

Probab=99.97  E-value=2.1e-32  Score=240.74  Aligned_cols=164  Identities=23%  Similarity=0.433  Sum_probs=120.8

Q ss_pred             cCCCceEEEEecccccCcCCCCC------------CCHHHHHHHHHHHHHHcCCCeEEEcCcccCC-------CCCCCCC
Q psy8670          37 WWQTSVFYHLYPRSFKDSNGDGV------------GDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-------MADFGYD   97 (224)
Q Consensus        37 w~~~~viY~i~~~~f~~~~~~~~------------g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~-------~~~~gY~   97 (224)
                      +|++.+||||++++|.++++++.            |||+|++++| +|||+||||+|||+||+++.       ...+||+
T Consensus         5 ~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gG~~~g~~~kL-dyL~~LGv~~I~L~Pi~~~~~~~~~~~~~~~gY~   83 (381)
T d2aaaa2           5 SWRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHL-DYIEGMGFTAIWISPITEQLPQDTADGEAYHGYW   83 (381)
T ss_dssp             HHTTCCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHTH-HHHHTTTCCEEEECCCEEECCCCBTTBCSTTSCS
T ss_pred             hhCCCcEEEEEeCcccCCCCCCCCCCCCCcCCcCCcCHHHHHHHH-HHHHHcCCCEEEeCCCccCCccCCCCCCCCcccc
Confidence            45888999999999998876654            9999999999 99999999999999999852       2458999


Q ss_pred             ccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhc---ccC----CCcc
Q psy8670          98 ISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARL---HDL----GVGA  170 (224)
Q Consensus        98 ~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~---~~l----G~~~  170 (224)
                      +.||++|||+|||+++|++||++||++||+||+|+|+||++.+++|.........++.+...+...   .+.    ....
T Consensus        84 ~~d~~~id~~~Gt~~~~k~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (381)
T d2aaaa2          84 QQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTMVED  163 (381)
T ss_dssp             EEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCBSSCGGGCCGGGSBSCCSGGGBCCCCBCCCTTCHHHHHH
T ss_pred             cccccccccccCCHHHHHHHHHHHhhhhhcccccccccccccccCCccccccccCCcccccccCCCccccccccccccCC
Confidence            999999999999999999999999999999999999999999998866433211111110000000   000    0001


Q ss_pred             eeecccccCCCCCCCCcchhhHH--HHHHHhhcc
Q psy8670         171 VWISPIFKSPMADFGYDISDYLR--IKILLDFVP  202 (224)
Q Consensus       171 ~w~~p~f~~~~~dlny~n~d~~~--i~ii~d~v~  202 (224)
                      .|.. -+...++++|+.|+++++  ++.++.++.
T Consensus       164 ~~~~-~~~~~~pdln~~np~v~~~~~~~~~~~~~  196 (381)
T d2aaaa2         164 CWEG-DTIVSLPDLDTTETAVRTIWYDWVADLVS  196 (381)
T ss_dssp             SBEE-CSSSEECBBCTTSHHHHHHHHHHHHHHHH
T ss_pred             CccC-CccccCccccccchhhhhHHhhhhhhccc
Confidence            1111 122346899999999987  355555543

>d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Plant alpha-amylase
species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]

Probab=99.97  E-value=3.2e-31  Score=227.07  Aligned_cols=148  Identities=18%  Similarity=0.153  Sum_probs=117.5

Q ss_pred             EEEeccccc-CcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHH
Q psy8670          44 YHLYPRSFK-DSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERL  121 (224)
Q Consensus        44 Y~i~~~~f~-~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~  121 (224)
                      |||.+.+|. ++..+++|++++|+++| +|||+||||+|||+||+++++ ++||++.||++||| +|||+++|++||++|
T Consensus         1 ~~~~~~~f~~~~~~~~~g~~~~i~~kL-dyl~~lGv~~i~L~Pi~~~~~-~~gY~~~d~~~id~~~~G~~~~f~~lv~~~   78 (347)
T d1ht6a2           1 HQVLFQGFNWESWKQSGGWYNMMMGKV-DDIAAAGVTHVWLPPPSHSVS-NEGYMPGRLYDIDASKYGNAAELKSLIGAL   78 (347)
T ss_dssp             CCCEEECCCTTGGGCTTCHHHHHHTTH-HHHHHTTCCEEEECCCSCBSS-TTSSSBCCTTCGGGCTTCCHHHHHHHHHHH
T ss_pred             CeeEEeccccCcCCCCCCCHHHHHHhH-HHHHHcCCCEEEECCCCcCCC-CCCCCccCcCcCCcccCCCHHHHHHHHHHH
Confidence            688888998 77888899999999999 999999999999999999984 69999999999998 699999999999999


Q ss_pred             HHcCCEEEEecCCCCCCccchhHHhhhcC-----CCCccccccchhccc----CCCcceeecccccCCCCCCCCcchhhH
Q psy8670         122 HALGIKILLDFVPNHTSNQHEWFKKSLAN-----IPPYKCASLLARLHD----LGVGAVWISPIFKSPMADFGYDISDYL  192 (224)
Q Consensus       122 h~~gi~vilD~v~nh~~~~~~w~~~~~~~-----~~~~~~~f~w~~~~~----lG~~~~w~~p~f~~~~~dlny~n~d~~  192 (224)
                      |++||+||+|+|+||++.+++|+......     ..++.+++.......    ......+....+...++|+|+.|++++
T Consensus        79 H~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~n~~v~  158 (347)
T d1ht6a2          79 HGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQ  158 (347)
T ss_dssp             HHTTCEEEEEECCSBCCCSEECTTSCEEECCCSSSSSTTCCCGGGBCTTCTTTCCSCSCCCSSCCCTTSCBBCTTCHHHH
T ss_pred             hhcceEEeeeccccccCCCCcccccccccccCCCCCCCcCcCccccCCCcccccccccccccccccCCCCcccccchhhh
Confidence            99999999999999999999998765421     122222221111000    112223344445556899999999988


Q ss_pred             H
Q psy8670         193 R  193 (224)
Q Consensus       193 ~  193 (224)
                      +
T Consensus       159 ~  159 (347)
T d1ht6a2         159 R  159 (347)
T ss_dssp             H
T ss_pred             h
Confidence            6

>d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Sucrose phosphorylase
species: Bifidobacterium adolescentis [TaxId: 1680]

Probab=99.97  E-value=1.2e-30  Score=225.55  Aligned_cols=143  Identities=23%  Similarity=0.230  Sum_probs=115.5

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccC-CCCCCCCCccCCCCcCCCCCCHHHHHHH
Q psy8670          39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETL  117 (224)
Q Consensus        39 ~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~-~~~~~gY~~~d~~~v~~~~G~~~~~~~l  117 (224)
                      ++.|+|++|++++.      .|+|+|++++| +||++||||+|||+||++. +..+|||++.||++|||+|||++||++|
T Consensus         2 ~~~~~~~~y~d~~~------~Gdl~g~~~~L-dyl~~LGv~~I~L~Pi~~~~~~~d~GY~~~Dy~~vdp~~Gt~~d~k~L   74 (434)
T d1r7aa2           2 KNKVQLITYADRLG------DGTIKSMTDIL-RTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDERLGSWDDVAEL   74 (434)
T ss_dssp             CSSCEEEECSSSBS------SSSHHHHHHHH-HHHSTTTCCEEEECCCEECSSSSSTTSSCSEEEEECTTTCCHHHHHHH
T ss_pred             CCceEEEEecCCCC------CCCHHHHHHHH-HHHHHcCCCEEEECCCCCCCCCCCCCcCcccccccCcccCCHHHHHHH
Confidence            57899999998874      49999999999 9999999999999999984 5567999999999999999999999999


Q ss_pred             HHHHHHcCCEEEEecCCCCCCccchhHHhhhcC--CCCccccccchhcccC----------------C---------Ccc
Q psy8670         118 KERLHALGIKILLDFVPNHTSNQHEWFKKSLAN--IPPYKCASLLARLHDL----------------G---------VGA  170 (224)
Q Consensus       118 v~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~--~~~~~~~f~w~~~~~l----------------G---------~~~  170 (224)
                           ++||+||+|+|+||||.+++|++++...  .+.|.++|.+.+....                +         ...
T Consensus        75 -----~rGi~VIlDvV~NHt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (434)
T d1r7aa2          75 -----SKTHNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKT  149 (434)
T ss_dssp             -----HTTSEEEEEEECSEEETTSHHHHHHHHHGGGSTTGGGBCBHHHHCTTCBCHHHHHTSCCSSSSCSEEEEEETTEE
T ss_pred             -----HhCCeeeEEecccccccccchhhhhhhccCCCcccccccccCCCCCCccccCCCCcccccCCccccccccccccc
Confidence                 3699999999999999999999998743  4556666654332110                0         011


Q ss_pred             eeecccccCCCCCCCCcchhhHH
Q psy8670         171 VWISPIFKSPMADFGYDISDYLR  193 (224)
Q Consensus       171 ~w~~p~f~~~~~dlny~n~d~~~  193 (224)
                      .++...+...++++|+.++++.+
T Consensus       150 ~~~~~~~~~~~~~ln~~~p~v~~  172 (434)
T d1r7aa2         150 RLVWVSFTPQQVDIDTDSDKGWE  172 (434)
T ss_dssp             EEEECSSSTTEEEBCTTSHHHHH
T ss_pred             ceeeeccccccchhcccchhhhh
Confidence            23333455567899999999876

>d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=8.4e-30  Score=221.80  Aligned_cols=140  Identities=16%  Similarity=0.201  Sum_probs=107.1

Q ss_pred             CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCC----------CCCCCccCCCCcCCC
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA----------DFGYDISDYLSFEPL  107 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~----------~~gY~~~d~~~v~~~  107 (224)
                      .++++|+|.+.+.           |++++++| +|||+||||+|||+||+++...          .|||++.||+.+||+
T Consensus         3 ~~~~~i~~~f~~~-----------f~~i~~~l-dyl~~lGv~aIwl~Pi~~~~~~~~~~~~~~~~y~gY~~~dy~~vd~~   70 (344)
T d1ua7a2           3 IKSGTILHAWNWS-----------FNTLKHNM-KDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRY   70 (344)
T ss_dssp             TTTSCEEECTTBC-----------HHHHHHTH-HHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEETT
T ss_pred             CCCCeEEEecCCc-----------HHHHHHhH-HHHHHcCCCEEEeCCCeeCCCcCCCCCCCCCCccccccccCCCCCCC
Confidence            3568999976654           58899999 9999999999999999987532          378999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCCCcceeecc-cccCCCCCCCC
Q psy8670         108 FGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLGVGAVWISP-IFKSPMADFGY  186 (224)
Q Consensus       108 ~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG~~~~w~~p-~f~~~~~dlny  186 (224)
                      |||++||++||++||++||+||+|+|+||++.+++|+.+....   +.+||...... ......|... .....++|+|+
T Consensus        71 ~Gt~~df~~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~Dln~  146 (344)
T d1ua7a2          71 LGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKS---IPNWTHGNTQI-KNWSDRWDVTQNSLLGLYDWNT  146 (344)
T ss_dssp             TEEHHHHHHHHHHHHTTTCEEEEEECCSBCCSCTTTSCHHHHT---STTCEEECCBC-CCTTCHHHHHHSBBTTBCEECT
T ss_pred             CCCHHHHHHHHHHhcccceeEeeccceeeecCCCchhhccccC---CcccccCCCCC-CCCCCCcCcccCccccCCcccc
Confidence            9999999999999999999999999999999999999876643   23344321110 0000000000 00124689999


Q ss_pred             cchhhHH
Q psy8670         187 DISDYLR  193 (224)
Q Consensus       187 ~n~d~~~  193 (224)
                      +|+++++
T Consensus       147 ~np~Vr~  153 (344)
T d1ua7a2         147 QNTQVQS  153 (344)
T ss_dssp             TSHHHHH
T ss_pred             CChHHHH
Confidence            9999876

>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase)
species: Pseudomonas stutzeri [TaxId: 316]

Probab=99.95  E-value=1.9e-28  Score=211.64  Aligned_cols=152  Identities=13%  Similarity=0.088  Sum_probs=108.9

Q ss_pred             CccCCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCC---------CCCCCCccCCCCcC
Q psy8670          35 LEWWQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPM---------ADFGYDISDYLSFE  105 (224)
Q Consensus        35 ~~w~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~---------~~~gY~~~d~~~v~  105 (224)
                      .-+-.+.|++|-|-+.-..  ....+++++|+++| +|||+||||+|||+|+++++.         .++||++.|| ++|
T Consensus        11 ~~~~g~~~~~~~f~w~~~~--~~~~~~~~~i~~kl-~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~~dy-~vd   86 (357)
T d1gcya2          11 RYHGGDEIILQGFHWNVVR--EAPNDWYNILRQQA-ATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDF-NKN   86 (357)
T ss_dssp             CCGGGCCCEEECCCTTHHH--HSTTTHHHHHHHHH-HHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSS-CSC
T ss_pred             eecCCCEEEEeeeecCCCC--CCCCcHHHHHHHHH-HHHHHcCCCEEEeCcCeeCCccCCCCCCCCCCCCcChhhc-ccC
Confidence            3345567888855322111  11235699999999 999999999999999998732         3579999998 799


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccccchhcccCC-CcceeecccccCCCCCC
Q psy8670         106 PLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCASLLARLHDLG-VGAVWISPIFKSPMADF  184 (224)
Q Consensus       106 ~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f~w~~~~~lG-~~~~w~~p~f~~~~~dl  184 (224)
                      |+|||++||++||++||++||+||+|+|+||++.+++|++........+  |+. ....... ....+....+...++|+
T Consensus        87 ~~~Gt~~df~~LV~~aH~~GI~VIlD~V~NH~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~dl  163 (357)
T d1gcya2          87 GRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGF--WRN-DCADPGNYPNDCDDGDRFIGGDADL  163 (357)
T ss_dssp             SSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCSSCSCCCCSSSSC--BGG-GSCCCSSSCBTTBSSCCSTTSTTBB
T ss_pred             ccCCCHHHHHHHHHHHHhcCCeEEEEEeccccCCCCCccccccccCCCc--ccc-ccCCCCCCCCCCCcccccccccccc
Confidence            9999999999999999999999999999999999999997655432111  111 0000000 11111222233456899


Q ss_pred             CCcchhhHH
Q psy8670         185 GYDISDYLR  193 (224)
Q Consensus       185 ny~n~d~~~  193 (224)
                      |+.|+++++
T Consensus       164 n~~np~v~~  172 (357)
T d1gcya2         164 NTGHPQVYG  172 (357)
T ss_dssp             CTTSHHHHH
T ss_pred             CCCCHHHHH
Confidence            999999886

>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=99.94  E-value=2.8e-27  Score=206.25  Aligned_cols=105  Identities=25%  Similarity=0.366  Sum_probs=91.0

Q ss_pred             CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC--CCCCCCCccCCC---------CcCC
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP--MADFGYDISDYL---------SFEP  106 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~--~~~~gY~~~d~~---------~v~~  106 (224)
                      -++.||+|.|.+    ..+++.+.+++|+++| +|||+||||+|||+||+++.  ..++||++.||+         +|||
T Consensus         7 ~~~~~~~q~f~w----~~~~~~~~~~gi~~kL-dylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~~~~~~~~~~~vd~   81 (361)
T d1mxga2           7 EEGGVIMQAFYW----DVPGGGIWWDHIRSKI-PEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVET   81 (361)
T ss_dssp             GGTCCEEECCCT----TCCCSSCHHHHHHHHH-HHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSSC
T ss_pred             ccCCEEEEeeec----CCCCCCchHHHHHHHH-HHHHhcCCCEEEeCcCeeCCCCCCCCCCCcccccccCccccccCCCC
Confidence            457899996543    3334456689999999 99999999999999999863  346999999997         6899


Q ss_pred             CCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhh
Q psy8670         107 LFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKS  147 (224)
Q Consensus       107 ~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~  147 (224)
                      +|||++||++||++||++||+||+|+|+||++.+++++...
T Consensus        82 ~~Gt~~d~~~LV~~aH~~GikVIlD~V~NH~~~~~~~~~~~  122 (361)
T d1mxga2          82 RFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPF  122 (361)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCCEEEEETT
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEeeeccccCCccccCCc
Confidence            99999999999999999999999999999999999888643

>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus sp., ksm-k38 [TaxId: 1409]

Probab=99.94  E-value=2.2e-27  Score=204.21  Aligned_cols=115  Identities=20%  Similarity=0.297  Sum_probs=94.8

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC-CCCCCCCccCCC---------CcCCCC
Q psy8670          39 QTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-MADFGYDISDYL---------SFEPLF  108 (224)
Q Consensus        39 ~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~-~~~~gY~~~d~~---------~v~~~~  108 (224)
                      ++++|.|.|-+.    .+..+|++++|+++| +|||+||||+|||+||+++. ..++||++.||+         ++||+|
T Consensus         3 ~~~~~~~~~~~~----~~~~~~~~~~i~~kL-dyLk~LGvt~I~l~Pi~~~~~~~~~gY~~~d~~~~~~~~~~~~vd~~~   77 (390)
T d1ud2a2           3 LNGTMMQYYEWH----LENDGQHWNRLHDDA-AALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKY   77 (390)
T ss_dssp             CCCCEEECCCTT----CCCSSCHHHHHHHHH-HHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSS
T ss_pred             CCCeEEEeeccC----CCCCCCCHHHHHHHH-HHHHHcCCCEEEeCCCccCCCCCCCCCCccCCcccccccccCCcCCCC
Confidence            457788855422    222358999999999 99999999999999999874 357999999996         799999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcCCCCccccc
Q psy8670         109 GDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLANIPPYKCAS  158 (224)
Q Consensus       109 G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~~~~~~~~f  158 (224)
                      ||++||++||++||++||+||+|+|+||++..++|+........++.+|+
T Consensus        78 Gt~~efk~lV~~~H~~GI~VilDvV~NHt~~~~~~~~~~~~~~~~~~~~~  127 (390)
T d1ud2a2          78 GTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQ  127 (390)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEE
T ss_pred             CCHHHHHHHHHHHHhcCCceEEEEccccccCcccchhhhhcccCcccccc
Confidence            99999999999999999999999999999999999865543333444443

>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]

Probab=99.94  E-value=6e-27  Score=205.95  Aligned_cols=101  Identities=23%  Similarity=0.408  Sum_probs=86.5

Q ss_pred             CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC-CCCCCCCccCCC---------CcCCCCC
Q psy8670          40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-MADFGYDISDYL---------SFEPLFG  109 (224)
Q Consensus        40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~-~~~~gY~~~d~~---------~v~~~~G  109 (224)
                      ++||+|.|-+    ..++.+|+++||+++| +|||+||||+|||+||+++. ..++||++.+++         +|||+||
T Consensus         2 ~~~~~~~f~w----~~~~~gg~~~gi~~kL-dylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd~~~G   76 (393)
T d1e43a2           2 NGTLMQYFEW----YTPNDGQHWKRLQNDA-EHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYG   76 (393)
T ss_dssp             CCCEEECCCT----TCCSSSCHHHHHHHHH-HHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSC
T ss_pred             CccEEEeEec----CCCCCCCCHHHHHHHH-HHHHHcCCCEEEeCcCccCCCCCCCCCCcccCcccccccccCccCCCCC
Confidence            4678886643    3334468999999999 99999999999999999873 456787777765         4899999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHH
Q psy8670         110 DLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFK  145 (224)
Q Consensus       110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~  145 (224)
                      |++||++||++||++||+||+|+|+||++.+++|+.
T Consensus        77 t~~df~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~  112 (393)
T d1e43a2          77 TKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATED  112 (393)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEE
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEEeeccccCCCcccc
Confidence            999999999999999999999999999999998864

>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=2.3e-26  Score=201.78  Aligned_cols=103  Identities=20%  Similarity=0.459  Sum_probs=88.7

Q ss_pred             CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCC-CCCCCCCccCCC---------CcCCCCC
Q psy8670          40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSP-MADFGYDISDYL---------SFEPLFG  109 (224)
Q Consensus        40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~-~~~~gY~~~d~~---------~v~~~~G  109 (224)
                      ++||+|.|-+.-    +...|++++|+++| +|||+||||+|||+||+++. ..++||++.||+         +|||+||
T Consensus         5 ~~~~~~~f~w~~----~~~~~~~~~i~~kL-dyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd~~~G   79 (393)
T d1hvxa2           5 NGTMMQYFEWYL----PDDGTLWTKVANEA-NNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYG   79 (393)
T ss_dssp             CCCEEECCCTTC----CSSSCHHHHHHHHH-HHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSC
T ss_pred             CceEEEeEeecc----CCCCChHHHHHHHH-HHHHHcCCCEEEECCCCcCCCCCCCCCCccCccccccccccCCcCCCCC
Confidence            578999775432    23457799999999 99999999999999999874 357999999996         5999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEecCCCCCC--ccchhHHhh
Q psy8670         110 DLKDFETLKERLHALGIKILLDFVPNHTS--NQHEWFKKS  147 (224)
Q Consensus       110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~--~~~~w~~~~  147 (224)
                      |++||++||++||++||+||+|+|+||++  ..++|+...
T Consensus        80 t~~df~~LV~~aH~~GIkVIlDvV~NHt~~~~~~~w~~~~  119 (393)
T d1hvxa2          80 TKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAV  119 (393)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEEecccccccCCccceeec
Confidence            99999999999999999999999999995  577887644

>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]

Probab=99.93  E-value=2.5e-26  Score=200.84  Aligned_cols=97  Identities=23%  Similarity=0.296  Sum_probs=85.1

Q ss_pred             CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCC-----CCCCCccCCCCcCCCCCCHHHH
Q psy8670          40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA-----DFGYDISDYLSFEPLFGDLKDF  114 (224)
Q Consensus        40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~-----~~gY~~~d~~~v~~~~G~~~~~  114 (224)
                      +.+|+|.|-++           +++|+++|.+||++||||+|||+|+.++...     .+||++.|| +|||+|||++||
T Consensus        10 ~~~i~~~f~W~-----------~~~i~~~~~~yl~~lG~tai~l~P~~e~~~~~~~~~~~~Y~~~dY-~id~~~Gt~~df   77 (378)
T d1jaea2          10 RNSIVHLFEWK-----------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSY-IINTRSGDESAF   77 (378)
T ss_dssp             CEEEEEETTCC-----------HHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCS-CSEETTEEHHHH
T ss_pred             CceEEEeccCc-----------HHHHHHHHHHHHHHhCCCEEEeCcccccCCCCCCCCccccCCccc-eeCCCCCCHHHH
Confidence            46899987775           5779999944899999999999999987421     267999997 799999999999


Q ss_pred             HHHHHHHHHcCCEEEEecCCCCCCccchhHHhhh
Q psy8670         115 ETLKERLHALGIKILLDFVPNHTSNQHEWFKKSL  148 (224)
Q Consensus       115 ~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~  148 (224)
                      ++||++||++||+||+|+|+||++.+++|+....
T Consensus        78 ~~LV~~aH~~GI~VilDvV~NH~~~~~~~~~~~~  111 (378)
T d1jaea2          78 TDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGS  111 (378)
T ss_dssp             HHHHHHHHHTTCEEEEEECCSBCCSSCEEBTTSC
T ss_pred             HHHHHHHHhcCceeeeeecccccccccCCCcccc
Confidence            9999999999999999999999999999987544

>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.93  E-value=3.6e-26  Score=201.22  Aligned_cols=100  Identities=19%  Similarity=0.247  Sum_probs=86.9

Q ss_pred             CCCceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCC-------CCCCCccCCCCcCCCCCC
Q psy8670          38 WQTSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA-------DFGYDISDYLSFEPLFGD  110 (224)
Q Consensus        38 ~~~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~-------~~gY~~~d~~~v~~~~G~  110 (224)
                      -.+.+|+|.|.+.|           ++|++++++||++||||+|||+|+.++...       .+||++.|| +|+|+|||
T Consensus         8 ~g~~~i~~~f~w~~-----------~~i~~e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~dY-~v~~~~Gt   75 (403)
T d1hx0a2           8 SGRTSIVHLFEWRW-----------VDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSY-KLCTRSGN   75 (403)
T ss_dssp             TTCCEEEEETTCCH-----------HHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCS-CSCBTTBC
T ss_pred             CCCeeEEEeecCcH-----------HHHHHHHHHHHHHhCCCEEEeCcCccCccCCCCCCCCceeecCCCC-ccCCCCCC
Confidence            34579999887764           779998868999999999999999986321       259999995 89999999


Q ss_pred             HHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhc
Q psy8670         111 LKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLA  149 (224)
Q Consensus       111 ~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~  149 (224)
                      ++||++||++||++||+||+|+|+||++.+++|+.....
T Consensus        76 ~~dfk~Lv~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~  114 (403)
T d1hx0a2          76 ENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTT  114 (403)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECCSEEEETTCCCBSCBS
T ss_pred             HHHHHHHHHHHHhcCCEEEEEEecccccccccccccccc
Confidence            999999999999999999999999999999999875543

>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]

Probab=99.92  E-value=4.3e-26  Score=197.68  Aligned_cols=95  Identities=21%  Similarity=0.263  Sum_probs=83.8

Q ss_pred             ceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCC---CCCCCccCCCCcCCCCCCHHHHHHH
Q psy8670          41 SVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMA---DFGYDISDYLSFEPLFGDLKDFETL  117 (224)
Q Consensus        41 ~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~---~~gY~~~d~~~v~~~~G~~~~~~~l  117 (224)
                      .+|.|.|-.+           +++|++++++|||+||||+|||+|++++...   .+||++.|| +|||+|||++||++|
T Consensus         3 ~~~~~~f~w~-----------~~~i~~~~~dyl~~lG~tai~l~P~~~~~~~~~~y~gY~~~dy-~vd~~~Gt~~dfk~L   70 (354)
T d1g94a2           3 TTFVHLFEWN-----------WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY-ELQSRGGNRAQFIDM   70 (354)
T ss_dssp             CCEEEETTCC-----------HHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCS-CSCBTTBCHHHHHHH
T ss_pred             cceEEcccCC-----------HHHHHHHHHHHHHHcCCCEEEeCcCccCCCCCCCcccCCCCcc-eeCCCCCCHHHHHHH
Confidence            4677766654           5789999978999999999999999997543   259999996 799999999999999


Q ss_pred             HHHHHHcCCEEEEecCCCCCCccchhHHhh
Q psy8670         118 KERLHALGIKILLDFVPNHTSNQHEWFKKS  147 (224)
Q Consensus       118 v~~~h~~gi~vilD~v~nh~~~~~~w~~~~  147 (224)
                      |++||++||+||+|+|+||++.+++|+...
T Consensus        71 V~~aH~~GI~VilDvV~NH~~~~~~~~~~~  100 (354)
T d1g94a2          71 VNRCSAAGVDIYVDTLINHMAAGSGTGTAG  100 (354)
T ss_dssp             HHHHHHTTCEEEEEEECSEECSSCEEBTTS
T ss_pred             HHHHhccCceeEEEeeccccccccCCCccc
Confidence            999999999999999999999999998744

>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltooligosyl trehalose synthase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.91  E-value=2.3e-25  Score=207.40  Aligned_cols=103  Identities=26%  Similarity=0.436  Sum_probs=90.8

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEcCcccC-CCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670          59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT  137 (224)
Q Consensus        59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~-~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~  137 (224)
                      .+||++++++| +||++|||++|||+||+++ +.++|||+++||+.|||+|||+++|++||++||++||+||+|+|+||+
T Consensus        13 gftF~~~~~~L-pYL~~LGVs~IyLsPi~~a~~gS~HGYDv~D~~~Vdp~lGt~edf~~LV~aaH~~Gm~VIlDiVpNH~   91 (653)
T d1iv8a2          13 NFNFGDVIDNL-WYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDIVPNHM   91 (653)
T ss_dssp             TBCHHHHHHTH-HHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEECTTTTHHHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred             CCCHHHHHHhh-HHHHHCCCCEEEECccCCCCCCCCCCccccCccccchhcCCHHHHHHHHHHHHHCCCEEEEEECCCcc
Confidence            47999999999 9999999999999999975 446799999999999999999999999999999999999999999999


Q ss_pred             CccchhH--Hhhhc-C-CCCccccccchh
Q psy8670         138 SNQHEWF--KKSLA-N-IPPYKCASLLAR  162 (224)
Q Consensus       138 ~~~~~w~--~~~~~-~-~~~~~~~f~w~~  162 (224)
                      |.+++|+  .+.++ + .++|.+||.+..
T Consensus        92 g~d~~~~~~~Dvl~~G~~S~y~~~fdi~~  120 (653)
T d1iv8a2          92 AVNSLNWRLMDVLKMGKKSKYYTYFDFFP  120 (653)
T ss_dssp             ECCTTCHHHHHHHHHGGGSTTGGGBCBCT
T ss_pred             cCCcccHHHHHhhhcCCCCCCcccccccC
Confidence            9887654  34442 2 678999987644

>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus sp. 707 [TaxId: 1416]

Probab=99.91  E-value=5.4e-25  Score=192.90  Aligned_cols=100  Identities=20%  Similarity=0.345  Sum_probs=85.3

Q ss_pred             CceEEEEecccccCcCCCCCCCHHHHHHHHHHHHHHcCCCeEEEcCcccC-CCCCCCCCccCCC---------CcCCCCC
Q psy8670          40 TSVFYHLYPRSFKDSNGDGVGDLKGMIEKLPEHLHDLGVGAVWISPIFKS-PMADFGYDISDYL---------SFEPLFG  109 (224)
Q Consensus        40 ~~viY~i~~~~f~~~~~~~~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~-~~~~~gY~~~d~~---------~v~~~~G  109 (224)
                      ++||+|.|-..    .+...+.+++|+++| +|||+||||+|||+||+++ +..++||++.|++         +|+|+||
T Consensus         2 ~~~~~q~f~w~----~~~~g~~~~~i~~kL-dyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd~~~G   76 (394)
T d2d3na2           2 NGTMMQYFEWY----LPNDGNHWNRLNSDA-SNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYG   76 (394)
T ss_dssp             CCCEEECCCTT----CCSSSCHHHHHHHHH-HHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSBTTB
T ss_pred             CccEEEEEecc----cCCCCCcHHHHHHHH-HHHHHcCCCEEEECcCccCCCCCCCCCCcccCcccccccccCCcCCCCC
Confidence            57899976322    122347899999999 9999999999999999987 4467888888876         5999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhH
Q psy8670         110 DLKDFETLKERLHALGIKILLDFVPNHTSNQHEWF  144 (224)
Q Consensus       110 ~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~  144 (224)
                      |++||++||++||++||+||+|+|+||++..+++.
T Consensus        77 t~~df~~Lv~~aH~~GIkVilDvV~NH~~~~~~~~  111 (394)
T d2d3na2          77 TRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATE  111 (394)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECCSEECSCSEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEEecccccCccccc
Confidence            99999999999999999999999999999776553

>d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.86  E-value=6.1e-13  Score=119.15  Aligned_cols=119  Identities=10%  Similarity=-0.046  Sum_probs=84.3

Q ss_pred             CCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccchhHHhhhcC--CCCccccccchhcccCCCcceee
Q psy8670          96 YDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQHEWFKKSLAN--IPPYKCASLLARLHDLGVGAVWI  173 (224)
Q Consensus        96 Y~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~~w~~~~~~~--~~~~~~~f~w~~~~~lG~~~~w~  173 (224)
                      |++.++..+++.+|+.+++.++..++|.+|+++++|+|.||++..|.|++.+...  .....+.+.|.+...   +..-.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wGYdv~---dy~~i  165 (563)
T d2fhfa5          89 KVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPF---HYTVP  165 (563)
T ss_dssp             GCCCTTSBHHHHHHHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEE---EEEEE
T ss_pred             cccccccccccccccccccchhhhhhhccccchhhhhhhcccccccchhhhhhcccccccccCcCCCCCChh---hcccc
Confidence            5566777888899999999999999999999999999999999999999988743  222333444332110   00112


Q ss_pred             cccccCCCCCCCCcchhh----------HHHHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         174 SPIFKSPMADFGYDISDY----------LRIKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       174 ~p~f~~~~~dlny~n~d~----------~~i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      .|.|++. +|+.=...++          +.||||||+|+||||.+|+||++...+
T Consensus       166 ~p~~Gt~-~d~~~~l~Efk~lV~a~~H~rGIkVIlD~V~NHts~~h~wf~~~~~~  219 (563)
T d2fhfa5         166 EGSYATD-PEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLD  219 (563)
T ss_dssp             CSTTSSC-CSTTHHHHHHHHHHHHHHHTSCCEEEEEECTTEESCCSSSCTTCCHH
T ss_pred             cCccCcC-cchhhHHHHHHHHHHHHhhccCceeeecCcccccCCCCCchhhcccC
Confidence            2444443 3433223333          248999999999999999999876544

>d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Amylosucrase
species: Neisseria polysaccharea [TaxId: 489]

Probab=98.78  E-value=1e-10  Score=106.34  Aligned_cols=85  Identities=32%  Similarity=0.591  Sum_probs=67.5

Q ss_pred             ccchhHHhhh-cCCCCcccccc---------chhcccCCCcceeecccccCC--CCCCCCcchhhHH-------------
Q psy8670         139 NQHEWFKKSL-ANIPPYKCASL---------LARLHDLGVGAVWISPIFKSP--MADFGYDISDYLR-------------  193 (224)
Q Consensus       139 ~~~~w~~~~~-~~~~~~~~~f~---------w~~~~~lG~~~~w~~p~f~~~--~~dlny~n~d~~~-------------  193 (224)
                      .++.|+++.. .+-..|.++|-         +++++++|++.+|++|++.++  ..++||+..||++             
T Consensus        88 ~~~~w~~~~~~~~~~~y~~~fgGDl~Gi~~kLdYLk~LGVt~I~L~Pi~~~p~~~sd~GY~v~dy~~Vdp~lGt~edl~~  167 (554)
T d1g5aa2          88 NNPDWILSNKQVGGVCYVDLFAGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLRE  167 (554)
T ss_dssp             TCGGGGGCTTCCEEEECHHHHHSSHHHHHTTHHHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBCTTTCCHHHHHH
T ss_pred             hCCccccCcCceeEEEeccccCcCHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCCCCcCcccCCCCCcccCCHHHHHH
Confidence            4567876543 33456677663         455678999999999999874  4789999999874             


Q ss_pred             ---------HHHHHhhcccCCCCCcHHHHHhhcCCCCCC
Q psy8670         194 ---------IKILLDFVPNHTSNQHEWFKKSLANIPPYS  223 (224)
Q Consensus       194 ---------i~ii~d~v~nh~~~~~~W~~~~~~~~~~~~  223 (224)
                               |+||+|+|+||||.+|+|++++.++.++|+
T Consensus       168 Lv~~aH~rGI~VilD~V~NHts~~h~w~~~~~~~~~~~~  206 (554)
T d1g5aa2         168 VIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFD  206 (554)
T ss_dssp             HHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCGGGT
T ss_pred             HHHHHHHCCCEEEEEECcCCCCCCccchhhhhccCCccc
Confidence                     579999999999999999999999877653

>d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Sucrose phosphorylase
species: Bifidobacterium adolescentis [TaxId: 1680]

Probab=98.65  E-value=6.1e-10  Score=94.18  Aligned_cols=60  Identities=32%  Similarity=0.339  Sum_probs=52.2

Q ss_pred             chhcccCCCcceeeccccc-CCCCCCCCcchhhHH-----------------HHHHHhhcccCCCCCcHHHHHhhcCC
Q psy8670         160 LARLHDLGVGAVWISPIFK-SPMADFGYDISDYLR-----------------IKILLDFVPNHTSNQHEWFKKSLANI  219 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~-~~~~dlny~n~d~~~-----------------i~ii~d~v~nh~~~~~~W~~~~~~~~  219 (224)
                      +++++++|++.+|++|+|. ++..++||+..||++                 |+||||+|+||+|..|+|+++..+..
T Consensus        26 Ldyl~~LGv~~I~L~Pi~~~~~~~d~GY~~~Dy~~vdp~~Gt~~d~k~L~rGi~VIlDvV~NHt~~~~~~~~~~~~~~  103 (434)
T d1r7aa2          26 LRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDERLGSWDDVAELSKTHNIMVDAIVNHMSWESKQFQDVLAKG  103 (434)
T ss_dssp             HHHHSTTTCCEEEECCCEECSSSSSTTSSCSEEEEECTTTCCHHHHHHHHTTSEEEEEEECSEEETTSHHHHHHHHHG
T ss_pred             HHHHHHcCCCEEEECCCCCCCCCCCCCcCcccccccCcccCCHHHHHHHHhCCeeeEEecccccccccchhhhhhhcc
Confidence            3455899999999999997 566899999999974                 68999999999999999999987653

>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Oligo-1,6, glucosidase
species: Bacillus cereus [TaxId: 1396]

Probab=98.39  E-value=1.5e-08  Score=88.76  Aligned_cols=59  Identities=46%  Similarity=0.975  Sum_probs=52.1

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++++++|++.+|++|++.++..+++|+..||++                      |+||||+|+||++..|+|+++..+.
T Consensus        38 dYLk~LGv~~I~l~Pi~~~~~~~~GY~~~d~~~vd~~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~  117 (479)
T d1uoka2          38 DYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKS  117 (479)
T ss_dssp             HHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTC
T ss_pred             HHHHHcCCCEEEECCCcCCCCCCCCcCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEecccccccccccchhhhhhhc
Confidence            345889999999999999887889999998864                      6899999999999999999998765


Q ss_pred             C
Q psy8670         219 I  219 (224)
Q Consensus       219 ~  219 (224)
                      .
T Consensus       118 ~  118 (479)
T d1uoka2         118 K  118 (479)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Isomaltulose synthase PalI
species: Klebsiella sp., lx3 [TaxId: 576]

Probab=98.37  E-value=1.7e-08  Score=88.40  Aligned_cols=59  Identities=46%  Similarity=0.919  Sum_probs=52.2

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++++++|++.+|++|++.++..++||+..||++                      |+||||+|+||++..|+|+++...+
T Consensus        38 dyLk~LGv~~I~L~Pi~~~~~~~~GY~~~d~~~vd~~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~f~~~~~~  117 (478)
T d1m53a2          38 DYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSD  117 (478)
T ss_dssp             HHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHC
T ss_pred             HHHHHcCCCEEEECCCCCCCCCCCCcCccCCCCcCcccCCHHHHHHHHHHHHHCCCEEEeccccccccccCchhhhcccC
Confidence            456889999999999999877889999988863                      6899999999999999999998765


Q ss_pred             C
Q psy8670         219 I  219 (224)
Q Consensus       219 ~  219 (224)
                      .
T Consensus       118 ~  118 (478)
T d1m53a2         118 K  118 (478)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 4-alpha-glucanotransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.17  E-value=4.1e-08  Score=83.78  Aligned_cols=59  Identities=41%  Similarity=0.826  Sum_probs=50.7

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++++++|++.+|++|++.+. .+++|+..||++                      |+||+|+|+||++..|+|++...++
T Consensus        30 dyl~~LGv~~I~l~Pi~~~~-~~~GY~~~d~~~vd~~~Gt~~d~~~lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~~~~  108 (391)
T d1lwha2          30 SYLKELGIDFVWLMPVFSSI-SFHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIKVVLDLPIHHTGFLHTWFQKALKG  108 (391)
T ss_dssp             HHHHHTTCSEEEECCCEECS-SSSCCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECTTBCCTTSHHHHHHHTT
T ss_pred             HHHHHcCCCEEEECCCCCCC-CCCCCCccCCCCcCcccCCHHHHHHHHHHHHhcCCEEeecccccccccccccccccccC
Confidence            34588999999999999876 578999888863                      5799999999999999999998876


Q ss_pred             CC
Q psy8670         219 IP  220 (224)
Q Consensus       219 ~~  220 (224)
                      .+
T Consensus       109 ~~  110 (391)
T d1lwha2         109 DP  110 (391)
T ss_dssp             CH
T ss_pred             Cc
Confidence            54

>d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]

Probab=98.12  E-value=1.9e-07  Score=79.12  Aligned_cols=59  Identities=39%  Similarity=0.657  Sum_probs=50.7

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++++++|++.+|++|++.+. .+++|...|+++                      |+||+|+|+||++..|+|+++...+
T Consensus        58 dylk~LGv~~i~l~Pi~~~~-~~~gY~~~~~~~id~~~Gt~~df~~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~~~~~  136 (382)
T d1ea9c3          58 DHLSKLGVNAVYFTPLFKAT-TNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKN  136 (382)
T ss_dssp             HHHHHHTCSEEEECCCSSCS-SSSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTHHHHHHHTT
T ss_pred             HHHHhCCCCEEEeCCCccCC-CCCCCCcccccccccccCCHHHHHHHHHHHHhhcceEEEeeecccccccCcchhhhhhc
Confidence            45588999999999999876 578899888764                      5799999999999999999998877


Q ss_pred             CC
Q psy8670         219 IP  220 (224)
Q Consensus       219 ~~  220 (224)
                      .+
T Consensus       137 ~~  138 (382)
T d1ea9c3         137 GE  138 (382)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]

Probab=98.10  E-value=8.5e-08  Score=82.82  Aligned_cols=57  Identities=37%  Similarity=0.706  Sum_probs=47.7

Q ss_pred             hhccc-CCCcceeecccccCCCCCCCCcchhhHH--------------------------HHHHHhhcccCCCCCcHHHH
Q psy8670         161 ARLHD-LGVGAVWISPIFKSPMADFGYDISDYLR--------------------------IKILLDFVPNHTSNQHEWFK  213 (224)
Q Consensus       161 ~~~~~-lG~~~~w~~p~f~~~~~dlny~n~d~~~--------------------------i~ii~d~v~nh~~~~~~W~~  213 (224)
                      +++++ +|++.+|++|++.++ .+++|+..||++                          |+||||+|+||++..|+|++
T Consensus        76 dYl~~~LGv~~I~L~Pi~~~~-~~~GY~~~d~~~id~~~Gt~~d~~~lv~~~H~~g~~~~I~VilD~V~NH~s~~~~~~~  154 (432)
T d1ji1a3          76 GYIKKTLGANILYLNPIFKAP-TNHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHPWFD  154 (432)
T ss_dssp             HHHHTTTCCCEEEESCCEECS-SSSCCSCSEEEEECTTTCCHHHHHHHHHHHHCSSSSSCCEEEEEECCSBCCTTSTTTC
T ss_pred             hHHHhhcCCCEEEeCCCCcCC-CCCCcccccccccCcccCCHHHHHHHHHHHHHhhhhcceeEeccccccccCCCchhHh
Confidence            44554 999999999999887 578999998863                          35999999999999999998


Q ss_pred             HhhcC
Q psy8670         214 KSLAN  218 (224)
Q Consensus       214 ~~~~~  218 (224)
                      +....
T Consensus       155 ~~~~~  159 (432)
T d1ji1a3         155 KYNNF  159 (432)
T ss_dssp             TTCCS
T ss_pred             hccCc
Confidence            76543

>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=98.08  E-value=1.4e-07  Score=80.54  Aligned_cols=56  Identities=34%  Similarity=0.498  Sum_probs=48.1

Q ss_pred             hhcccCCCcceeecccccCC-CCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhh
Q psy8670         161 ARLHDLGVGAVWISPIFKSP-MADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSL  216 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~-~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~  216 (224)
                      ++++++|++.+|++|++.++ ..++||+..||+.                      |+||+|+|+||++..|+|+.+..
T Consensus        36 dyi~~LGv~~i~l~Pv~~~~~~~~~GY~~~d~~~vd~~~Gt~~dlk~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~~~  114 (400)
T d1eh9a3          36 DYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLG  114 (400)
T ss_dssp             HHHHHHTCCEEEECCCBCCSSSCCCSTTCCCTTCBCSTTCCHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCHHHHS
T ss_pred             HHHHHcCCCEEEeCCcCcCCCCCCCCCCCCCCCCcCcccCCHHHHHHHHHHHHhcCCceeeecccccccCCCcchhhhc
Confidence            44578999999999999864 5678999999874                      58999999999999999998753

>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Neopullulanase, central domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.96  E-value=2.2e-07  Score=78.88  Aligned_cols=57  Identities=37%  Similarity=0.728  Sum_probs=48.6

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++++++|++.+|++|++.++ .+.+|+..|+++                      |+||+|+|+||++.+|+|++.....
T Consensus        60 dyl~~LGv~~i~L~Pi~~~~-~~~gy~~~d~~~vd~~~Gt~~~~~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~  138 (382)
T d1j0ha3          60 DYLVDLGITGIYLTPIFRSP-SNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKN  138 (382)
T ss_dssp             HHHHHHTCCEEEECCCEECS-SSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHHHHHH
T ss_pred             HHHHHcCCCEEEeCCCCcCC-cccCCCcccccccCCCCCCHHHHHHHHHHhhhccceEEEEeeecccccccccchhhhcc
Confidence            45578999999999999876 578898888763                      5899999999999999999887653

>d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]

Probab=97.93  E-value=2.8e-07  Score=78.13  Aligned_cols=57  Identities=46%  Similarity=0.751  Sum_probs=48.7

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLAN  218 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~  218 (224)
                      ++++++|++.+|++|++.++ .+.+|...|+++                      |+||+|+|+||++..|+|+++....
T Consensus        60 dyl~~lGi~~I~l~Pv~~~~-~~~gY~~~~~~~vd~~~Gt~~d~~~lv~~~H~~Gi~vilD~V~NH~s~~~~~~~~~~~~  138 (382)
T d1wzla3          60 PYLEELGVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQK  138 (382)
T ss_dssp             HHHHHHTCCEEEECCCEECS-SSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHH
T ss_pred             HHHHHCCCCEEEECCcCCCC-cccCCccccccccccCCCCHHHHHHHHHHHHhcccceEeeeeecccccccccccchhhc
Confidence            45688999999999999876 578898887763                      5899999999999999999987543

>d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.92  E-value=1.9e-07  Score=79.23  Aligned_cols=61  Identities=30%  Similarity=0.436  Sum_probs=48.2

Q ss_pred             hhcccCCCcceeecccccCCCCC----------CCCcchhhHH----------------------HHHHHhhcccCCCCC
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMAD----------FGYDISDYLR----------------------IKILLDFVPNHTSNQ  208 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~d----------lny~n~d~~~----------------------i~ii~d~v~nh~~~~  208 (224)
                      ++++++|++.+|++|++.++..+          ++|+..||+.                      |+||+|+|+||++..
T Consensus        24 dyl~~lGv~aIwl~Pi~~~~~~~~~~~~~~~~y~gY~~~dy~~vd~~~Gt~~df~~LV~~aH~~Gi~VilD~V~NH~~~~  103 (344)
T d1ua7a2          24 KDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFD  103 (344)
T ss_dssp             HHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEETTTEEHHHHHHHHHHHHTTTCEEEEEECCSBCCSC
T ss_pred             HHHHHcCCCEEEeCCCeeCCCcCCCCCCCCCCccccccccCCCCCCCCCCHHHHHHHHHHhcccceeEeeccceeeecCC
Confidence            34578999999999999765322          4577777653                      689999999999999


Q ss_pred             cHHHHHhhcCCCC
Q psy8670         209 HEWFKKSLANIPP  221 (224)
Q Consensus       209 ~~W~~~~~~~~~~  221 (224)
                      |+|+++..+..+.
T Consensus       104 ~~~~~~~~~~~~~  116 (344)
T d1ua7a2         104 YAAISNEVKSIPN  116 (344)
T ss_dssp             TTTSCHHHHTSTT
T ss_pred             CchhhccccCCcc
Confidence            9999988766443

>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Halothermothrix orenii [TaxId: 31909]

Probab=97.92  E-value=8.7e-07  Score=75.22  Aligned_cols=57  Identities=47%  Similarity=0.990  Sum_probs=49.1

Q ss_pred             cccCCCcceeecccccCCCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhcCCC
Q psy8670         163 LHDLGVGAVWISPIFKSPMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLANIP  220 (224)
Q Consensus       163 ~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~~~~  220 (224)
                      .+++|++.+|++|++.++ .+++|+..|++.                      |+||+|+|+||++..|+|+++......
T Consensus        44 i~~LGv~~i~l~Pi~~~~-~~~GY~~~d~~~vd~~~G~~~dlk~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~  122 (409)
T d1wzaa2          44 IADLGVNGIWLMPIFKSP-SYHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKN  122 (409)
T ss_dssp             CSSCCCSEEEECCCEECS-SSSCCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTT
T ss_pred             HhhcCccEEEECCCCCCC-CCCCcCcccCCCcCcccCCHHHHHHHHHHHHhcCCEEEEecccccccccCcchhhhhcccc
Confidence            478999999999999877 468899888763                      579999999999999999999887643

>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltooligosyl trehalose synthase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.88  E-value=2.3e-07  Score=85.19  Aligned_cols=58  Identities=33%  Similarity=0.580  Sum_probs=46.7

Q ss_pred             hhcccCCCcceeecccccC-CCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcH--HHHHh
Q psy8670         161 ARLHDLGVGAVWISPIFKS-PMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHE--WFKKS  215 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~-~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~--W~~~~  215 (224)
                      ++++.+|++.+|.+|+|.+ +.+++||+..||.+                      |+||+|+|+||+|..|.  |+.+.
T Consensus        24 pYL~~LGVs~IyLsPi~~a~~gS~HGYDv~D~~~Vdp~lGt~edf~~LV~aaH~~Gm~VIlDiVpNH~g~d~~~~~~~Dv  103 (653)
T d1iv8a2          24 WYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVNSLNWRLMDV  103 (653)
T ss_dssp             HHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEECTTTTHHHHHHHHHHHHHHTTCEEEEEECCSEEECCTTCHHHHHH
T ss_pred             HHHHHCCCCEEEECccCCCCCCCCCCccccCccccchhcCCHHHHHHHHHHHHHCCCEEEEEECCCcccCCcccHHHHHh
Confidence            4457899999999999964 56889999999974                      58999999999988774  44555


Q ss_pred             hcC
Q psy8670         216 LAN  218 (224)
Q Consensus       216 ~~~  218 (224)
                      .++
T Consensus       104 l~~  106 (653)
T d1iv8a2         104 LKM  106 (653)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            544

>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 1,4-alpha-glucan branching enzyme, central domain
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=3.7e-07  Score=76.51  Aligned_cols=57  Identities=19%  Similarity=0.374  Sum_probs=48.5

Q ss_pred             hhcccCCCcceeecccccCCC-CCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHhhc
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM-ADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKSLA  217 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~-~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~~~  217 (224)
                      ++++++|++.+|++|++.++. ..+||+..||++                      |+||+|+|+||++..|+|++....
T Consensus        48 dyl~~LGv~~iwl~Pi~~~~~~~~hGY~~~d~~~vdp~~Gt~~d~~~LV~~aH~~gi~VilD~V~NH~~~~~~~~~~~~~  127 (396)
T d1m7xa3          48 PYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDG  127 (396)
T ss_dssp             HHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEEECTTSCCCSTTSSTTGGG
T ss_pred             HHHHHcCCCEEEeCCCCCCCCCCCCCcCcCcCCCcCcccCCHHHHHHHHHHHhhhhhhhhhcccccccCCcccccccccC
Confidence            456899999999999998764 567999999874                      689999999999999999876543

>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Isoamylase, central domain
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=97.87  E-value=2.7e-07  Score=80.51  Aligned_cols=55  Identities=33%  Similarity=0.550  Sum_probs=43.7

Q ss_pred             hhcccCCCcceeecccccCCC-------------CCCCCcchhhHH-----------------------------HHHHH
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM-------------ADFGYDISDYLR-----------------------------IKILL  198 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~-------------~dlny~n~d~~~-----------------------------i~ii~  198 (224)
                      ++++++|++.+|++|++.++.             ..+||+..||++                             |+||+
T Consensus        50 dyl~~LGvnaiwl~Pi~~~~~~~~~~~~~~~~~~~y~GY~~~d~~~vdp~y~~~~~~~Gt~~d~~~LV~~aH~~GIrVil  129 (475)
T d1bf2a3          50 SYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYM  129 (475)
T ss_dssp             HHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBSCSSCBCGGGCSCCSTTHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHcCCCEEEeCCCCcCCCcccccccccccCcCCCCCCcccCCCcCcccccCCCCCCCHHHHHHHHHHHHhcCcEEEE
Confidence            445889999999999986532             236788777642                             58999


Q ss_pred             hhcccCCCCCcHHHHHh
Q psy8670         199 DFVPNHTSNQHEWFKKS  215 (224)
Q Consensus       199 d~v~nh~~~~~~W~~~~  215 (224)
                      |+|+||++..|+|+++.
T Consensus       130 D~V~NH~~~~~~~~~~~  146 (475)
T d1bf2a3         130 DVVYNHTAEGGTWTSSD  146 (475)
T ss_dssp             EECCSSCTTCSBSSSSC
T ss_pred             EeccccccCCCcccccC
Confidence            99999999999999654

>d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclomaltodextrinase, central domain
species: Flavobacterium sp. 92 [TaxId: 197856]

Probab=97.85  E-value=3e-07  Score=79.00  Aligned_cols=57  Identities=26%  Similarity=0.568  Sum_probs=47.0

Q ss_pred             chhcccCCCcceeecccccCC---CCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHH
Q psy8670         160 LARLHDLGVGAVWISPIFKSP---MADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKK  214 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~---~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~  214 (224)
                      +++++++|++.+|++|++.++   ....+|+..||++                      |+||+|+|+||++..|+|+++
T Consensus        59 Ldyl~~LGv~~I~l~Pi~~~~~~~~~~~GY~~~d~~~vd~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~  138 (422)
T d1h3ga3          59 LDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKD  138 (422)
T ss_dssp             HHHHHHHTCCEEEECCCEECCCSSCGGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSGGGGS
T ss_pred             HHHHHHCCCCEEEeCCcccCCCCCCCCCCCCccccCCcccccCCHHHHHHHHHHHHHhCccccccCccccccccchhhcc
Confidence            345688999999999999764   3457888888863                      589999999999999999976


Q ss_pred             hh
Q psy8670         215 SL  216 (224)
Q Consensus       215 ~~  216 (224)
                      ..
T Consensus       139 ~~  140 (422)
T d1h3ga3         139 LP  140 (422)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Plant alpha-amylase
species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]

Probab=97.81  E-value=4.9e-07  Score=74.97  Aligned_cols=55  Identities=22%  Similarity=0.323  Sum_probs=45.9

Q ss_pred             hhcccCCCcceeecccccCCCCCCCCcchhhHH-----------------------HHHHHhhcccCCCCCcHHHHHhh
Q psy8670         161 ARLHDLGVGAVWISPIFKSPMADFGYDISDYLR-----------------------IKILLDFVPNHTSNQHEWFKKSL  216 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~~dlny~n~d~~~-----------------------i~ii~d~v~nh~~~~~~W~~~~~  216 (224)
                      ++++++|++.+|++|++.+. .+++|+..|+++                       |+||+|+|+||++..|+|++...
T Consensus        28 dyl~~lGv~~i~L~Pi~~~~-~~~gY~~~d~~~id~~~~G~~~~f~~lv~~~H~~gi~VilD~V~NH~~~~~~~~~~~~  105 (347)
T d1ht6a2          28 DDIAAAGVTHVWLPPPSHSV-SNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIY  105 (347)
T ss_dssp             HHHHHTTCCEEEECCCSCBS-STTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCSEECTTSCE
T ss_pred             HHHHHcCCCEEEECCCCcCC-CCCCCCccCcCcCCcccCCCHHHHHHHHHHHhhcceEEeeeccccccCCCCccccccc
Confidence            34578999999999999887 577888777653                       58999999999999999986543

>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.81  E-value=5.9e-07  Score=77.33  Aligned_cols=55  Identities=25%  Similarity=0.459  Sum_probs=46.7

Q ss_pred             hhcccCCCcceeecccccC-CCCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHHHHHh
Q psy8670         161 ARLHDLGVGAVWISPIFKS-PMADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEWFKKS  215 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~-~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W~~~~  215 (224)
                      ++++++|++++|++|++.. +...+||+..||+.                      |+||+|+|+||++..|+|+.+.
T Consensus        41 dyl~~LGv~~i~L~Pv~~~~~~~~~GY~~~d~~~vdp~~G~~~d~~~lv~~aH~~gi~VilD~V~NH~~~~~~~~~~~  118 (420)
T d2bhua3          41 PYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYLSSY  118 (420)
T ss_dssp             HHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCHHHH
T ss_pred             HHHHHcCCCEEEeCCCCcCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHhccccccccccccccCCCCcccccc
Confidence            4457899999999999874 44668999888863                      6899999999999999999875

>d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Thermoanaerobacterium [TaxId: 28895]

Probab=97.77  E-value=1.9e-07  Score=80.23  Aligned_cols=58  Identities=36%  Similarity=0.550  Sum_probs=47.8

Q ss_pred             hcccCCCcceeecccccC------------CCCCCCCcchhhHH----------------------HHHHHhhcccCCCC
Q psy8670         162 RLHDLGVGAVWISPIFKS------------PMADFGYDISDYLR----------------------IKILLDFVPNHTSN  207 (224)
Q Consensus       162 ~~~~lG~~~~w~~p~f~~------------~~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~  207 (224)
                      +++++|++.+|++|++.+            +...++|+..||++                      |+||||+|+||++.
T Consensus        65 YLk~LGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vdp~~Gt~~dfk~LV~~aH~~Gi~VilD~V~NH~~~  144 (406)
T d3bmva4          65 YLTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSP  144 (406)
T ss_dssp             TTGGGTCCEEEECCCEEECCCCEEETTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEE
T ss_pred             HHHHcCCCEEEECCcccccccccCCCCCCCChhhcCcccccccccCcccccHHHHHHHHHHHHhccccceeeeecccccc
Confidence            568999999999999752            34678999888863                      58999999999999


Q ss_pred             CcHHHHHhhcCC
Q psy8670         208 QHEWFKKSLANI  219 (224)
Q Consensus       208 ~~~W~~~~~~~~  219 (224)
                      .|+|++...+..
T Consensus       145 ~~~~~~~~~~~~  156 (406)
T d3bmva4         145 ASETDPTYAENG  156 (406)
T ss_dssp             CCSSCTTSTTTT
T ss_pred             cccchhhhcccC
Confidence            999987766543

>d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltosyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.73  E-value=4.5e-07  Score=80.83  Aligned_cols=57  Identities=21%  Similarity=0.509  Sum_probs=43.8

Q ss_pred             chhcccCCCcceeecccccC------CCCCCCCcchhhHH------------------------------HHHHHhhccc
Q psy8670         160 LARLHDLGVGAVWISPIFKS------PMADFGYDISDYLR------------------------------IKILLDFVPN  203 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~------~~~dlny~n~d~~~------------------------------i~ii~d~v~n  203 (224)
                      +++++++|++.+|++|++..      +..+.+|+..||+.                              |+||||+|+|
T Consensus       126 LdYLk~LGvtaI~L~Pi~~~~~~~~~~~~~~GY~~~dy~~~dp~~~~~~~~~~Gt~~dfk~lV~~~H~~GI~VIlDvV~N  205 (572)
T d1gjwa2         126 LPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFIPR  205 (572)
T ss_dssp             HHHHHHHTCCEEEECCCEEECCSSCSSSSCCTTSEEEEEEECGGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             hHHHHHcCCCEEEeCCcccCccccCCCCCCCCCCccCCCCCCcccccccccCCCCHHHHHHHHHHHHhcCcEEEEEeeec
Confidence            45678899999999999853      23345676555431                              5899999999


Q ss_pred             CCCCCcHHHHHhh
Q psy8670         204 HTSNQHEWFKKSL  216 (224)
Q Consensus       204 h~~~~~~W~~~~~  216 (224)
                      ||+..|+|+++..
T Consensus       206 Hts~~~~~~~~~~  218 (572)
T d1gjwa2         206 TAARDSDLIREHP  218 (572)
T ss_dssp             EEETTCGGGTTCG
T ss_pred             ccccCCHHHHhCc
Confidence            9999999997643

>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=97.67  E-value=4.1e-07  Score=77.22  Aligned_cols=55  Identities=29%  Similarity=0.508  Sum_probs=44.7

Q ss_pred             hhcccCCCcceeecccccC--CCCCCCCcchhhHH-------------------------------HHHHHhhcccCCCC
Q psy8670         161 ARLHDLGVGAVWISPIFKS--PMADFGYDISDYLR-------------------------------IKILLDFVPNHTSN  207 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~--~~~dlny~n~d~~~-------------------------------i~ii~d~v~nh~~~  207 (224)
                      ++++++|++.+|++|++.+  +..+++|+..||+.                               |+||+|+|+||++.
T Consensus        35 dylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~~~~~~~~~~~vd~~~Gt~~d~~~LV~~aH~~GikVIlD~V~NH~~~  114 (361)
T d1mxga2          35 PEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAG  114 (361)
T ss_dssp             HHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCC
T ss_pred             HHHHhcCCCEEEeCcCeeCCCCCCCCCCCcccccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeeeccccC
Confidence            4458899999999999974  34578888888741                               68999999999999


Q ss_pred             CcHHHHHh
Q psy8670         208 QHEWFKKS  215 (224)
Q Consensus       208 ~~~W~~~~  215 (224)
                      .|+|++..
T Consensus       115 ~~~~~~~~  122 (361)
T d1mxga2         115 GDLEWNPF  122 (361)
T ss_dssp             CEEEEETT
T ss_pred             CccccCCc
Confidence            98887554

>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase)
species: Pseudomonas stutzeri [TaxId: 316]

Probab=97.65  E-value=1.3e-06  Score=73.23  Aligned_cols=58  Identities=26%  Similarity=0.395  Sum_probs=45.7

Q ss_pred             hhcccCCCcceeecccccCCC---------CCCCCcchhhH---------------------HHHHHHhhcccCCCCCcH
Q psy8670         161 ARLHDLGVGAVWISPIFKSPM---------ADFGYDISDYL---------------------RIKILLDFVPNHTSNQHE  210 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~~---------~dlny~n~d~~---------------------~i~ii~d~v~nh~~~~~~  210 (224)
                      ++++++|++.+|++|++.+..         ..++|+..||.                     .|+||+|+|+||++..|+
T Consensus        44 ~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~~dy~vd~~~Gt~~df~~LV~~aH~~GI~VIlD~V~NH~~~~~~  123 (357)
T d1gcya2          44 ATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYP  123 (357)
T ss_dssp             HHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSSCSCSSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCS
T ss_pred             HHHHHcCCCEEEeCcCeeCCccCCCCCCCCCCCCcChhhcccCccCCCHHHHHHHHHHHHhcCCeEEEEEeccccCCCCC
Confidence            445789999999999987632         34678877663                     168999999999999999


Q ss_pred             HHHHhhcC
Q psy8670         211 WFKKSLAN  218 (224)
Q Consensus       211 W~~~~~~~  218 (224)
                      |++.....
T Consensus       124 ~~~~~~~~  131 (357)
T d1gcya2         124 DKEINLPA  131 (357)
T ss_dssp             SCSCCCCS
T ss_pred             cccccccc
Confidence            98765544

>d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=97.62  E-value=3.5e-07  Score=78.53  Aligned_cols=60  Identities=32%  Similarity=0.566  Sum_probs=47.6

Q ss_pred             chhcccCCCcceeecccccCC--------CCCCCCcchhhHH----------------------HHHHHhhcccCCCCCc
Q psy8670         160 LARLHDLGVGAVWISPIFKSP--------MADFGYDISDYLR----------------------IKILLDFVPNHTSNQH  209 (224)
Q Consensus       160 w~~~~~lG~~~~w~~p~f~~~--------~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~  209 (224)
                      +++++++|++.+|++|++.+.        ...++|+..||++                      |+||+|+|+||++..|
T Consensus        58 Ldyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~~~gY~~~d~~~id~~~Gt~~d~k~Lv~~~H~~Gi~VilD~V~NH~s~~~  137 (407)
T d1qhoa4          58 LPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFK  137 (407)
T ss_dssp             HHHHHHHTCCEEEECCCEEECSSCSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEB
T ss_pred             HHHHHHcCCCEEEeCccccCCcccCCCCCCCCCceeeeecCCCCCCCCCHHHHHHHHHHhhhcccceeeccccccccCCc
Confidence            455688999999999998753        2347888888763                      5899999999999999


Q ss_pred             HHHHHhhcCC
Q psy8670         210 EWFKKSLANI  219 (224)
Q Consensus       210 ~W~~~~~~~~  219 (224)
                      +|++...+..
T Consensus       138 ~~~~~~~~~~  147 (407)
T d1qhoa4         138 ANDSTFAEGG  147 (407)
T ss_dssp             TTBTTSTTTT
T ss_pred             cccccccccC
Confidence            9987765543

>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]

Probab=97.62  E-value=1.2e-06  Score=74.83  Aligned_cols=57  Identities=23%  Similarity=0.391  Sum_probs=45.9

Q ss_pred             hhcccCCCcceeecccccCC-------CCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHH
Q psy8670         161 ARLHDLGVGAVWISPIFKSP-------MADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEW  211 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~-------~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W  211 (224)
                      ++++++|++.+|++|++.+.       .+.++|+..||++                      |+||+|+|+||+|..|.|
T Consensus        50 dyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~s~~~~~  129 (381)
T d2guya2          50 DYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAG  129 (381)
T ss_dssp             HHHHTTTCCEEEECCCEEECCCCBTTBCCTTSCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBCG
T ss_pred             HHHHHCCCCEEEeCCCCCCCcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHhhccceeeeccccccccccCc
Confidence            45588999999999998742       2457888888763                      589999999999999999


Q ss_pred             HHHhhc
Q psy8670         212 FKKSLA  217 (224)
Q Consensus       212 ~~~~~~  217 (224)
                      ++....
T Consensus       130 ~~~~~~  135 (381)
T d2guya2         130 SSVDYS  135 (381)
T ss_dssp             GGCCGG
T ss_pred             cccccc
Confidence            876443

>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus sp., ksm-k38 [TaxId: 1409]

Probab=97.55  E-value=1.4e-06  Score=72.62  Aligned_cols=54  Identities=37%  Similarity=0.557  Sum_probs=43.1

Q ss_pred             hhcccCCCcceeecccccC-CCCCCCCcchhhH----------------------H---------HHHHHhhcccCCCCC
Q psy8670         161 ARLHDLGVGAVWISPIFKS-PMADFGYDISDYL----------------------R---------IKILLDFVPNHTSNQ  208 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~-~~~dlny~n~d~~----------------------~---------i~ii~d~v~nh~~~~  208 (224)
                      ++++++|++.+|++|++.+ +..+.||+..|++                      +         |+||+|+|+||++..
T Consensus        30 dyLk~LGvt~I~l~Pi~~~~~~~~~gY~~~d~~~~~~~~~~~~vd~~~Gt~~efk~lV~~~H~~GI~VilDvV~NHt~~~  109 (390)
T d1ud2a2          30 AALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGA  109 (390)
T ss_dssp             HHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCC
T ss_pred             HHHHHcCCCEEEeCCCccCCCCCCCCCCccCCcccccccccCCcCCCCCCHHHHHHHHHHHHhcCCceEEEEccccccCc
Confidence            3458899999999999975 3467788776663                      1         689999999999999


Q ss_pred             cHHHHH
Q psy8670         209 HEWFKK  214 (224)
Q Consensus       209 ~~W~~~  214 (224)
                      |.|...
T Consensus       110 ~~~~~~  115 (390)
T d1ud2a2         110 DFTEAV  115 (390)
T ss_dssp             SEEEEE
T ss_pred             ccchhh
Confidence            998643

>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.40  E-value=2.4e-06  Score=72.85  Aligned_cols=55  Identities=29%  Similarity=0.701  Sum_probs=43.2

Q ss_pred             hhcccCCCcceeecccccC-CCCCCCCcchhhH-------------------------------HHHHHHhhcccCC--C
Q psy8670         161 ARLHDLGVGAVWISPIFKS-PMADFGYDISDYL-------------------------------RIKILLDFVPNHT--S  206 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~-~~~dlny~n~d~~-------------------------------~i~ii~d~v~nh~--~  206 (224)
                      ++++++|++.+|++|++.+ +..+++|+..|++                               .|+||+|+|+||+  +
T Consensus        31 dyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd~~~Gt~~df~~LV~~aH~~GIkVIlDvV~NHt~~~  110 (393)
T d1hvxa2          31 NNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGA  110 (393)
T ss_dssp             HHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCC
T ss_pred             HHHHHcCCCEEEECCCCcCCCCCCCCCCccCccccccccccCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccccccc
Confidence            4568899999999999976 3467888877663                               1589999999998  4


Q ss_pred             CCcHHHHHh
Q psy8670         207 NQHEWFKKS  215 (224)
Q Consensus       207 ~~~~W~~~~  215 (224)
                      ..|+|++..
T Consensus       111 ~~~~w~~~~  119 (393)
T d1hvxa2         111 DGTEWVDAV  119 (393)
T ss_dssp             SEEEEEEEE
T ss_pred             CCccceeec
Confidence            578887543

>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]

Probab=97.38  E-value=3.1e-06  Score=72.28  Aligned_cols=53  Identities=32%  Similarity=0.572  Sum_probs=40.8

Q ss_pred             hhcccCCCcceeecccccC-CCCCCCCcchhhH----------------------H---------HHHHHhhcccCCCCC
Q psy8670         161 ARLHDLGVGAVWISPIFKS-PMADFGYDISDYL----------------------R---------IKILLDFVPNHTSNQ  208 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~-~~~dlny~n~d~~----------------------~---------i~ii~d~v~nh~~~~  208 (224)
                      ++++++|++.+|++|++.+ ...+++|+..+++                      +         |+||+|+|+||++..
T Consensus        28 dylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd~~~Gt~~df~~Lv~~~H~~Gi~VilD~V~NH~~~~  107 (393)
T d1e43a2          28 EHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGA  107 (393)
T ss_dssp             HHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCC
T ss_pred             HHHHHcCCCEEEeCcCccCCCCCCCCCCcccCcccccccccCccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccCC
Confidence            4458899999999999976 3456665544332                      1         689999999999999


Q ss_pred             cHHHH
Q psy8670         209 HEWFK  213 (224)
Q Consensus       209 ~~W~~  213 (224)
                      |+|++
T Consensus       108 ~~~~~  112 (393)
T d1e43a2         108 DATED  112 (393)
T ss_dssp             SEEEE
T ss_pred             Ccccc
Confidence            99864

>d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus niger, acid amylase [TaxId: 5061]

Probab=97.37  E-value=4.9e-06  Score=70.90  Aligned_cols=54  Identities=26%  Similarity=0.431  Sum_probs=43.5

Q ss_pred             hhcccCCCcceeecccccCC-------CCCCCCcchhhHH----------------------HHHHHhhcccCCCCCcHH
Q psy8670         161 ARLHDLGVGAVWISPIFKSP-------MADFGYDISDYLR----------------------IKILLDFVPNHTSNQHEW  211 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~~-------~~dlny~n~d~~~----------------------i~ii~d~v~nh~~~~~~W  211 (224)
                      ++++++|++.+|++|++.+.       .+.++|...|+++                      |+||+|+|+||++..+.|
T Consensus        50 dyL~~LGv~~I~L~Pi~~~~~~~~~~~~~~~gY~~~d~~~id~~~Gt~~~~k~lv~~aH~~Gi~VilD~V~NH~~~~~~~  129 (381)
T d2aaaa2          50 DYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNG  129 (381)
T ss_dssp             HHHHTTTCCEEEECCCEEECCCCBTTBCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCBSSCG
T ss_pred             HHHHHcCCCEEEeCCCccCCccCCCCCCCCcccccccccccccccCCHHHHHHHHHHHhhhhhcccccccccccccccCC
Confidence            45688999999999998632       2446788887763                      689999999999999988


Q ss_pred             HHH
Q psy8670         212 FKK  214 (224)
Q Consensus       212 ~~~  214 (224)
                      ...
T Consensus       130 ~~~  132 (381)
T d2aaaa2         130 NDV  132 (381)
T ss_dssp             GGC
T ss_pred             ccc
Confidence            654

>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus sp. 707 [TaxId: 1416]

Probab=97.31  E-value=4.2e-06  Score=71.17  Aligned_cols=52  Identities=33%  Similarity=0.544  Sum_probs=39.3

Q ss_pred             hhcccCCCcceeecccccC-CCCCCCCcchhhH----------------------H---------HHHHHhhcccCCCCC
Q psy8670         161 ARLHDLGVGAVWISPIFKS-PMADFGYDISDYL----------------------R---------IKILLDFVPNHTSNQ  208 (224)
Q Consensus       161 ~~~~~lG~~~~w~~p~f~~-~~~dlny~n~d~~----------------------~---------i~ii~d~v~nh~~~~  208 (224)
                      ++++++|++.+|++|++.+ +..+.+|+..|++                      +         ||||+|+|+||++..
T Consensus        28 dyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd~~~Gt~~df~~Lv~~aH~~GIkVilDvV~NH~~~~  107 (394)
T d2d3na2          28 SNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGA  107 (394)
T ss_dssp             HHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEECSC
T ss_pred             HHHHHcCCCEEEECcCccCCCCCCCCCCcccCcccccccccCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEEecccccCc
Confidence            3457899999999999976 4456666544432                      1         689999999999988


Q ss_pred             cHHH
Q psy8670         209 HEWF  212 (224)
Q Consensus       209 ~~W~  212 (224)
                      |.|.
T Consensus       108 ~~~~  111 (394)
T d2d3na2         108 DATE  111 (394)
T ss_dssp             SEEE
T ss_pred             cccc
Confidence            7654

>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.13  E-value=6e-06  Score=70.46  Aligned_cols=56  Identities=23%  Similarity=0.223  Sum_probs=42.3

Q ss_pred             cccCCCcceeecccccCCCC-------CCCCcchhhH---------------------HHHHHHhhcccCCCCCcHHHHH
Q psy8670         163 LHDLGVGAVWISPIFKSPMA-------DFGYDISDYL---------------------RIKILLDFVPNHTSNQHEWFKK  214 (224)
Q Consensus       163 ~~~lG~~~~w~~p~f~~~~~-------dlny~n~d~~---------------------~i~ii~d~v~nh~~~~~~W~~~  214 (224)
                      ++++|++.+|++|+..+...       -++|...||.                     .|+||+|+|+||++..++|+.+
T Consensus        32 L~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~dY~v~~~~Gt~~dfk~Lv~~aH~~GI~VIlDvV~NH~~~~~~~~~~  111 (403)
T d1hx0a2          32 LGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGT  111 (403)
T ss_dssp             TTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEEEETTCCCBS
T ss_pred             HHHhCCCEEEeCcCccCccCCCCCCCCceeecCCCCccCCCCCCHHHHHHHHHHHHhcCCEEEEEEeccccccccccccc
Confidence            57899999999999775322       1467665542                     1689999999999999998866


Q ss_pred             hhcC
Q psy8670         215 SLAN  218 (224)
Q Consensus       215 ~~~~  218 (224)
                      ....
T Consensus       112 ~~~~  115 (403)
T d1hx0a2         112 GTTC  115 (403)
T ss_dssp             CBSS
T ss_pred             cccc
Confidence            5443

>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]

Probab=97.11  E-value=6.7e-06  Score=69.04  Aligned_cols=53  Identities=23%  Similarity=0.166  Sum_probs=42.0

Q ss_pred             cccCCCcceeecccccCCCC---CCCCcchhhH---------------------HHHHHHhhcccCCCCCcHHHHHh
Q psy8670         163 LHDLGVGAVWISPIFKSPMA---DFGYDISDYL---------------------RIKILLDFVPNHTSNQHEWFKKS  215 (224)
Q Consensus       163 ~~~lG~~~~w~~p~f~~~~~---dlny~n~d~~---------------------~i~ii~d~v~nh~~~~~~W~~~~  215 (224)
                      ++++|++.+|++|+..+...   -++|+..||.                     .|+||+|+|+||++..|.|++..
T Consensus        24 l~~lG~tai~l~P~~~~~~~~~~y~gY~~~dy~vd~~~Gt~~dfk~LV~~aH~~GI~VilDvV~NH~~~~~~~~~~~  100 (354)
T d1g94a2          24 LGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAG  100 (354)
T ss_dssp             HHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEEECSEECSSCEEBTTS
T ss_pred             HHHcCCCEEEeCcCccCCCCCCCcccCCCCcceeCCCCCCHHHHHHHHHHHhccCceeEEEeeccccccccCCCccc
Confidence            47899999999999876432   2678777652                     16899999999999999987653

>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Exomannosidase
species: Cellvibrio mixtus [TaxId: 39650]

Probab=96.83  E-value=0.0037  Score=51.32  Aligned_cols=69  Identities=19%  Similarity=0.329  Sum_probs=49.0

Q ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCC-----HHHHHHHHHHHHHcCCEEEEecC
Q psy8670          60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGD-----LKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~-----~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      .+-..+.+.+ +.||++|+|+|-+....+...    .....+-.+.+..|.     .+.+.+++++|+++||+||+|+.
T Consensus        38 ~~~~~~~~~l-~~~k~~G~N~iR~~~~~~~~~----~~~~~~~~~~~~~g~~de~gl~~~d~~l~~a~~~Gi~vi~~l~  111 (410)
T d1uuqa_          38 GDRDRLAKEL-DNLKAIGVNNLRVLAVSEKSE----INSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYFN  111 (410)
T ss_dssp             CCHHHHHHHH-HHHHHTTCCEEEEECCCBCCC----STTSCSSCSBSSTTCBCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCHHHHHHHH-HHHHHCCCcEEEeCCcccccc----cccccCCCcccccccccHHHHHHHHHHHHHHHHcCCeeEEecc
Confidence            4556777778 999999999998754333211    122233345555554     56788999999999999999995

>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]

Probab=96.80  E-value=2.4e-05  Score=66.04  Aligned_cols=53  Identities=30%  Similarity=0.376  Sum_probs=39.5

Q ss_pred             cccCCCcceeecccccCCCCC-----CCCcchhhH---------------------HHHHHHhhcccCCCCCcHHHHHh
Q psy8670         163 LHDLGVGAVWISPIFKSPMAD-----FGYDISDYL---------------------RIKILLDFVPNHTSNQHEWFKKS  215 (224)
Q Consensus       163 ~~~lG~~~~w~~p~f~~~~~d-----lny~n~d~~---------------------~i~ii~d~v~nh~~~~~~W~~~~  215 (224)
                      ++++|++.+|++|+..+....     .+|...||.                     .|+||+|+|+||++..|.|++..
T Consensus        32 l~~lG~tai~l~P~~e~~~~~~~~~~~~Y~~~dY~id~~~Gt~~df~~LV~~aH~~GI~VilDvV~NH~~~~~~~~~~~  110 (378)
T d1jaea2          32 LQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSG  110 (378)
T ss_dssp             TTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCSCSEETTEEHHHHHHHHHHHHHTTCEEEEEECCSBCCSSCEEBTTS
T ss_pred             HHHhCCCEEEeCcccccCCCCCCCCccccCCccceeCCCCCCHHHHHHHHHHHHhcCceeeeeecccccccccCCCccc
Confidence            578999999999997653221     445544432                     16899999999999999987543

>d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: endo-1,4-beta-mannosidase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=96.54  E-value=0.0017  Score=52.21  Aligned_cols=69  Identities=9%  Similarity=0.018  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670          64 GMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPN  135 (224)
Q Consensus        64 ~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~n  135 (224)
                      .+.+.+ ++||++|+|+|-+...........-........+++  ...+.+.+++++|+++||.||+|+.-.
T Consensus        43 ~~~~~l-~~~~~~G~N~vRv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~a~~~gi~vi~d~~~~  111 (350)
T d2c0ha1          43 TFESTL-SDMQSHGGNSVRVWLHIEGESTPEFDNNGYVTGIDN--TLISDMRAYLHAAQRHNILIFFTLWNG  111 (350)
T ss_dssp             HHHHHH-HHHHHTTCCEEEEEEEETTSSSSEECTTSCEEECCT--THHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             HHHHHH-HHHHHcCCCEEEECcccCccCCcccccCCCCCccCh--hhhHHHHHHHHHHHHCCCEEEEEeccc
Confidence            344556 999999999998732211110000000000011121  336899999999999999999999543

>d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endocellulase E1
species: Acidothermus cellulolyticus [TaxId: 28049]

Probab=96.50  E-value=0.0042  Score=50.90  Aligned_cols=66  Identities=14%  Similarity=0.284  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHcCCCeEEEcCcccC--CCCCCCCCccCCCCcCCCC---CCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          65 MIEKLPEHLHDLGVGAVWISPIFKS--PMADFGYDISDYLSFEPLF---GDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        65 ~~~~l~~~l~~lG~~~i~l~Pi~~~--~~~~~gY~~~d~~~v~~~~---G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      +.+.+ +.||++|+|+|-|+ +.-.  ....-.+... ..+.++.+   ...+.++++++.|+++||+||+|+-
T Consensus        46 ~~~~~-~~i~~~G~N~VRlp-v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ld~~v~~a~~~Gl~Vildlh  116 (358)
T d1ecea_          46 YRSML-DQIKSLGYNTIRLP-YSDDILKPGTMPNSIN-FYQMNQDLQGLTSLQVMDKIVAYAGQIGLRIILDRH  116 (358)
T ss_dssp             HHHHH-HHHHHTTCCEEEEE-EEGGGGSTTCCCCSCC-CSSSCTTTTTCCHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHH-HHHHHcCCCEEEec-CcHHHccCCCCCCCcc-ccccChhhhchhHHHHHHHHHHHHHHCCCceeeecc
Confidence            45556 99999999999993 3211  1010111121 22444443   3378899999999999999999993

>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-mannanase
species: Trichoderma reesei [TaxId: 51453]

Probab=96.37  E-value=0.0038  Score=50.74  Aligned_cols=73  Identities=10%  Similarity=0.124  Sum_probs=44.8

Q ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCC-------CCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          60 GDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLF-------GDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        60 g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~-------G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      .+-..+.+.| +.++++|+|+|-+.-..... ...-+....+..++..-       ...+.+.+++++|+++||+||+|+
T Consensus        33 ~~~~~~~~~l-~~~~~~G~N~iR~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~a~~~Gi~vi~~l  110 (344)
T d1qnra_          33 TNHADVDSTF-SHISSSGLKVVRVWGFNDVN-TQPSPGQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPF  110 (344)
T ss_dssp             CCHHHHHHHH-HHHHHTTCCEEECCCCCEES-SCCSTTCCCSEECCTTCCEECCSTTTTHHHHHHHHHHHHHTCEEEEES
T ss_pred             CCHHHHHHHH-HHHHhcCCCEEEECCccccc-ccCCCCccchhhcccccCccccCHHHHHHHHHHHHHHHHcCCeeEeec
Confidence            3456677777 99999999999873211110 00111111111111111       125789999999999999999999


Q ss_pred             CC
Q psy8670         133 VP  134 (224)
Q Consensus       133 v~  134 (224)
                      ..
T Consensus       111 ~~  112 (344)
T d1qnra_         111 VN  112 (344)
T ss_dssp             CB
T ss_pred             cC
Confidence            63

>d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-mannanase
species: Bacillus sp. JAMB-602 [TaxId: 244966]

Probab=96.30  E-value=0.007  Score=48.39  Aligned_cols=58  Identities=12%  Similarity=0.150  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670          65 MIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS  138 (224)
Q Consensus        65 ~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~  138 (224)
                      ..+.+ +.||++|+|+|-| |+.+...    |.          -+..+.++++|+.|.++||.||+|+--....
T Consensus        34 ~~~d~-~~~~~~G~N~VRl-~~~~~~~----~~----------~~~~~~ld~~v~~a~~~Gi~vildlh~~~~~   91 (297)
T d1wkya2          34 ATTAI-EGIANTGANTVRI-VLSDGGQ----WT----------KDDIQTVRNLISLAEDNNLVAVLEVHDATGY   91 (297)
T ss_dssp             HHHHH-HHHHTTTCSEEEE-EECCSSS----SC----------CCCHHHHHHHHHHHHHTTCEEEEEECTTTTC
T ss_pred             HHHHH-HHHHHCCCcEEEE-eccCCCc----cC----------ccHHHHHHHHHHHHHHCCCceEeeccccccc
Confidence            45566 9999999999987 3332111    11          1336889999999999999999998544333

>d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-mannanase
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=96.07  E-value=0.0061  Score=49.54  Aligned_cols=68  Identities=4%  Similarity=0.053  Sum_probs=43.1

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP  134 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~  134 (224)
                      +-+.+.+.| +.+|++|+|+|-+.........  .+... --.++  ....+.+++++++|+++||+||+|+..
T Consensus        37 ~~~~~~~~l-~~~k~~G~N~vR~~~~~~~~~~--~~~~~-~g~~~--~~~l~~ld~~l~~a~~~Gi~vi~~l~~  104 (370)
T d1rh9a1          37 TRIKVTNTF-QQASKYKMNVARTWAFSHGGSR--PLQSA-PGVYN--EQMFQGLDFVISEAKKYGIHLIMSLVN  104 (370)
T ss_dssp             TTHHHHHHH-HHHHHTTCCEEEEESSCSSSSS--CSEEE-TTEEC--HHHHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred             CHHHHHHHH-HHHHHCCCeEEEECCccCccCc--ccCCC-CCccc--HHHHHHHHHHHHHHHHcCCEEEEeccc
Confidence            335567778 9999999999997432111100  00000 00011  123678999999999999999999953

>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase homologue TM1752
species: Thermotoga maritima [TaxId: 2336]

Probab=96.04  E-value=0.0055  Score=49.50  Aligned_cols=58  Identities=10%  Similarity=-0.002  Sum_probs=39.4

Q ss_pred             HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      +.+ +.|+++|+|+|-|.=-...-....+     ...+++  ...+-++++|++|.++||+||+|+
T Consensus        24 ~d~-~~l~~~G~n~vRlpv~~~~~~~~~~-----~~~~~~--~~l~~ld~~v~~~~~~gi~vildl   81 (325)
T d1vjza_          24 EDF-LWMAQWDFNFVRIPMCHLLWSDRGN-----PFIIRE--DFFEKIDRVIFWGEKYGIHICISL   81 (325)
T ss_dssp             HHH-HHHHHTTCCEEEEEEEGGGTSCSSC-----TTCCCG--GGHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHH-HHHHHcCCCEEEecccHHHccCCCC-----CCccCH--HHHHHHHHHHHHHHHcCCcEEEee
Confidence            446 8999999999998522221111111     112222  236889999999999999999998

>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Exo-beta-(1,3)-glucanase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=96.02  E-value=0.0057  Score=51.73  Aligned_cols=54  Identities=20%  Similarity=0.255  Sum_probs=37.9

Q ss_pred             HHHHHHHcCCCeEEEcCcc-cCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          69 LPEHLHDLGVGAVWISPIF-KSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        69 l~~~l~~lG~~~i~l~Pi~-~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      + +.||++|+|+|-| |+. ..-....+ .+     ..  -+..+.++++|+.|.++||+||+|+
T Consensus        74 ~-~~i~~~G~N~VRi-Pv~~~~~~~~~~-~~-----~~--~~~~~~ld~~i~~a~~~gl~VilDl  128 (394)
T d2pb1a1          74 F-KQISNLGLNFVRI-PIGYWAFQLLDN-DP-----YV--QGQVQYLEKALGWARKNNIRVWIDL  128 (394)
T ss_dssp             H-HHHHHTTCCEEEE-EEEGGGTCCCTT-CC-----CC--CCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             H-HHHHHCCCCEEEE-EecHHHhcCCCC-Cc-----cc--hhHHHHHHHHHHHHHHCCcEEEEEe
Confidence            5 8899999999999 442 21100000 00     01  1457889999999999999999999

>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase CelC
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.92  E-value=0.005  Score=50.72  Aligned_cols=58  Identities=16%  Similarity=0.199  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHcCCCeEEEcCccc-CCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          66 IEKLPEHLHDLGVGAVWISPIFK-SPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        66 ~~~l~~~l~~lG~~~i~l~Pi~~-~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      .+.+ +.||++|+|+|-| |+.- .-....+    . ..+++  +..+.+.++|+.|+++||+||+|+
T Consensus        31 e~d~-~~i~~~G~n~vRl-pi~~~~~~~~~~----~-~~~~~--~~~~~ld~~v~~a~~~gi~vild~   89 (340)
T d1ceoa_          31 EKDI-ETIAEAGFDHVRL-PFDYPIIESDDN----V-GEYKE--DGLSYIDRCLEWCKKYNLGLVLDM   89 (340)
T ss_dssp             HHHH-HHHHHHTCCEEEE-EEEGGGTBCSSS----T-TCBCH--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHH-HHHHHcCCCEEEe-ecCHHHhccCCC----C-CccCH--HHHHHHHHHHHHHHHcCCEEEEEe
Confidence            3456 9999999999998 4421 1000000    0 01111  125779999999999999999999

>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-1,4-galactanase
species: Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]

Probab=95.74  E-value=0.0092  Score=48.33  Aligned_cols=50  Identities=24%  Similarity=0.276  Sum_probs=38.7

Q ss_pred             HHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          69 LPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        69 l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      +++.||+.|||+|-+. ++..+.  .            .....+.++++++.|+++||+||+|+-
T Consensus        32 ~~~~lk~~G~n~VRi~-vW~~p~--~------------g~~~~~~~~~~v~~a~~~gl~vil~~h   81 (332)
T d1hjsa_          32 LENILAANGVNTVRQR-VWVNPA--D------------GNYNLDYNIAIAKRAKAAGLGVYIDFH   81 (332)
T ss_dssp             HHHHHHHTTCCEEEEE-ECSSCT--T------------CTTSHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             HHHHHHHcCCCEEEee-eeecCC--C------------CccCHHHHHHHHHHHHHCCCEEEEEec
Confidence            3378899999999985 552221  1            123589999999999999999999994

>d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Exo-beta-(1,3)-glucanase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.0091  Score=50.84  Aligned_cols=53  Identities=15%  Similarity=0.157  Sum_probs=36.4

Q ss_pred             HHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCC--CCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          71 EHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLF--GDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        71 ~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~--G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      +.||++|+|+|-|+=-+..-      .+   ..-++.+  ...+-++++|+.|+++||+||||+
T Consensus        80 ~~i~~~G~N~VRiPi~~~~~------~~---~~~~~~~~~~~~~~ld~~v~~a~~~gl~VilDl  134 (408)
T d1h4pa_          80 ANIASQGFNLVRIPIGYWAF------QI---LDDDPYVSGLQESYLDQAIGWARNNSLKVWVDL  134 (408)
T ss_dssp             HHHHHTTCCEEEEEEEGGGT------CC---CTTCCCCCSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHCCCCEEEEeccHHHh------cC---CCCCCCcChhHHHHHHHHHHHHHHCCCEEEEEe
Confidence            89999999999986222110      00   0011111  125679999999999999999999

>d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Amylomaltase MalQ
species: Thermus aquaticus [TaxId: 271]

Probab=95.39  E-value=0.011  Score=51.94  Aligned_cols=58  Identities=22%  Similarity=0.242  Sum_probs=50.4

Q ss_pred             CCCCCCH-HHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHH
Q psy8670          56 GDGVGDL-KGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDF  114 (224)
Q Consensus        56 ~~~~g~l-~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~  114 (224)
                      +.++|+| ++..+-+ +.+++.|++.++++|+.+....++.|++.+=+.+||-|=+.+++
T Consensus        19 ~~GiGdfG~~a~~fi-d~l~~~G~~~wQiLPl~pt~~~~SPYs~~S~fAlNPlyIdle~L   77 (500)
T d1eswa_          19 PYGVGVLGREARDFL-RFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGNPYLIDLRPL   77 (500)
T ss_dssp             SSSSCCSSHHHHHHH-HHHHHTTCCEEECCCCSCBCTTCCTTSBSCSSCCCGGGCCSHHH
T ss_pred             CCCCcchhHHHHHHH-HHHHHcCCCEEEECCCCCCCCCCCCcCcccchhcCHHHcCHHhh
Confidence            3568999 7887777 99999999999999999987777899999999999998776554

>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Outer surface protein, N-terminal domain
domain: Outer surface protein, N-terminal domain
species: Bacillus cereus [TaxId: 1396]

Probab=95.33  E-value=0.028  Score=44.52  Aligned_cols=62  Identities=8%  Similarity=0.171  Sum_probs=41.8

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTS  138 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~  138 (224)
                      +.+...+.+ +..++.||+.|+.+=..+..      +..+         -.+.|+++++.||++||+||+|+.++-..
T Consensus        15 ~~e~~~~yi-~~a~~~Gf~~iFTSL~~~e~------~~~~---------~~~~~~~l~~~a~~~g~~vi~DIsp~~l~   76 (244)
T d1x7fa2          15 TKEKDMAYI-SAAARHGFSRIFTCLLSVNR------PKEE---------IVAEFKEIINHAKDNNMEVILDVAPAVFD   76 (244)
T ss_dssp             CHHHHHHHH-HHHHTTTEEEEEEEECCC-----------------------HHHHHHHHHHHHTTCEEEEEECTTCC-
T ss_pred             CHHHHHHHH-HHHHHCCCCEEEecCccCCC------CHHH---------HHHHHHHHHHHHHHCCCEEEEEcCHHHHH
Confidence            445566666 77889999999874311111      0111         14789999999999999999999987543

>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-1,4-galactanase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=95.26  E-value=0.023  Score=47.05  Aligned_cols=54  Identities=26%  Similarity=0.314  Sum_probs=41.2

Q ss_pred             HHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCC
Q psy8670          69 LPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHT  137 (224)
Q Consensus        69 l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~  137 (224)
                      +++.||+.||++|-|- ++..+.  .            ..-+.+.+++++++|+++||+|++|+....+
T Consensus        32 ~~~~lk~~G~n~VRlr-vW~~p~--~------------g~~~~~~~~~~~~~a~~~Gm~vll~~hysd~   85 (334)
T d1foba_          32 LETILADAGINSIRQR-VWVNPS--D------------GSYDLDYNLELAKRVKAAGMSLYLDLHLSDT   85 (334)
T ss_dssp             HHHHHHHHTCCEEEEE-ECSCCT--T------------CTTCHHHHHHHHHHHHHTTCEEEEEECCSSS
T ss_pred             HHHHHHHcCCCEEEee-eeeCCC--C------------CcCcHHHHHHHHHHHHHCCCEEEEEecCCCc
Confidence            3377899999999975 543221  1            1336899999999999999999999966544

>d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase CelA
species: Clostridium cellulolyticum [TaxId: 1521]

Probab=95.15  E-value=0.0082  Score=50.22  Aligned_cols=59  Identities=10%  Similarity=0.211  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          66 IEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      ++++++.||++||++|-|+=-+..-.     ...+ +.+|+.+  ++.++++|+.|+++||.||||+
T Consensus        63 t~~~i~~ik~~Gfn~vRiPv~w~~~~-----~~~~-~~i~~~~--l~~v~~vV~~a~~~Gl~VIldl  121 (380)
T d1edga_          63 TKQMIDAIKQKGFNTVRIPVSWHPHV-----SGSD-YKISDVW--MNRVQEVVNYCIDNKMYVILNT  121 (380)
T ss_dssp             CHHHHHHHHHHTCCEEEECCCCGGGE-----ETTT-TEECHHH--HHHHHHHHHHHHTTTCEEEEEC
T ss_pred             cHHHHHHHHHcCCCEEEEcccHHHhc-----CCCC-CccCHHH--HHHHHHHHHHHHHcCCEEEEec
Confidence            34444999999999999942121100     0111 2445433  5789999999999999999998

>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-1,4-galactanase
species: Bacillus licheniformis [TaxId: 1402]

Probab=95.14  E-value=0.02  Score=48.01  Aligned_cols=54  Identities=28%  Similarity=0.349  Sum_probs=37.7

Q ss_pred             HHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCC--CCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          70 PEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPL--FGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        70 ~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~--~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      ++.||+.|+|+|-| |++..+.. +.       .-.+.  .-.++.+.++++.|+++||+||+|+
T Consensus        44 ~~~lk~~G~n~VRl-~vw~~~~~-~~-------~~~~~~g~~~l~~~~~~~~~a~~~Gl~v~ldl   99 (387)
T d1ur4a_          44 FKTLKEAGVNYVRV-RIWNDPYD-AN-------GNGYGGGNNDLEKAIQIGKRATANGMKLLADF   99 (387)
T ss_dssp             HHHHHHTTCCEEEE-EECSCCBC-TT-------CCBCSTTCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHcCCCEEEe-ecccCCcc-cc-------cCcCCCccccHHHHHHHHHHHHHCCCEEEEEe
Confidence            38899999999995 34432211 10       11111  1237899999999999999999999

>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: YicI catalytic domain-like
domain: Alpha-galactosidase GalA catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.02  E-value=0.0066  Score=50.46  Aligned_cols=73  Identities=14%  Similarity=0.185  Sum_probs=53.9

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHTSN  139 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~  139 (224)
                      +-+.+.+.+ +.++++|++.|.+=--+...       ..|+ .+|+ +|.   +++.|++.+|++||++.+-+.+..++.
T Consensus        21 ~e~~i~~~a-~~~~~~g~~~i~iDdgW~~~-------~gd~-~~d~~~FP---glk~l~~~~h~~G~k~gl~~~p~~~~~   88 (348)
T d1zy9a2          21 TWEETLKNL-KLAKNFPFEVFQIDDAYEKD-------IGDW-LVTRGDFP---SVEEMAKVIAENGFIPGIWTAPFSVSE   88 (348)
T ss_dssp             CHHHHHHHH-HHGGGTTCSEEEECTTSEEE-------TTEE-EEECTTCC---CHHHHHHHHHHTTCEEEEEECTTEEET
T ss_pred             CHHHHHHHH-HHHHcCCCcEEEECcccccC-------CCCc-eECcccCc---CHHHHHHHHHhcCCEEEEEeeeccccC
Confidence            446677777 88999999998774322211       1233 3443 466   589999999999999999998888888


Q ss_pred             cchhHH
Q psy8670         140 QHEWFK  145 (224)
Q Consensus       140 ~~~w~~  145 (224)
                      +++.++
T Consensus        89 ~s~~~~   94 (348)
T d1zy9a2          89 TSDVFN   94 (348)
T ss_dssp             TCHHHH
T ss_pred             CcHHHH
Confidence            888887

>d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Alkaline cellulase K catalytic domain
species: Bacillus sp. [TaxId: 1409]

Probab=94.90  E-value=0.02  Score=47.12  Aligned_cols=53  Identities=11%  Similarity=0.186  Sum_probs=38.4

Q ss_pred             HHHHHHHHH-cCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          67 EKLPEHLHD-LGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        67 ~~l~~~l~~-lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      +.+ +.|++ +|+|+|-|. +...+   .+      +..+|.+  .+.+++.|+.|.++||.||+|+
T Consensus        55 ~~~-~~l~~~~G~N~VRlp-~~~~~---~~------~~~~~~~--~~~ld~~V~~a~~~GiyVIlD~  108 (357)
T d1g01a_          55 NAF-VALSNDWGSNMIRLA-MYIGE---NG------YATNPEV--KDLVYEGIELAFEHDMYVIVDW  108 (357)
T ss_dssp             HHH-HHHHTTSCCSEEEEE-EESSS---SS------TTTCTTH--HHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHH-HHHHHhcCCCEEEEe-eeecC---CC------CccCHHH--HHHHHHHHHHHHHCCCEEEEee
Confidence            345 77874 899999983 32211   12      2445543  6789999999999999999998

>d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId: 76935]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase Cel5a
species: Bacillus agaradhaerens [TaxId: 76935]

Probab=94.54  E-value=0.028  Score=45.07  Aligned_cols=53  Identities=21%  Similarity=0.369  Sum_probs=37.7

Q ss_pred             HHHHHHHH-HcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          67 EKLPEHLH-DLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        67 ~~l~~~l~-~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      +.+ +.|+ ++|+|+|-+. +++..   .+      +..+|.+  .+.+.++|+.|.++||.||+|+
T Consensus        44 ~~~-~~l~~~~G~N~VR~~-~~~~~---~~------~~~~~~~--~~~ld~~v~~a~~~Gl~Vild~   97 (300)
T d7a3ha_          44 ESM-KWLRDDWGINVFRAA-MYTSS---GG------YIDDPSV--KEKVKEAVEAAIDLDIYVIIDW   97 (300)
T ss_dssp             HHH-HHHHHHTCCCEEEEE-EESST---TS------TTTCTTH--HHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHH-HHHHHHcCCCEEEEe-eEcCc---cC------cccCHHH--HHHHHHHHHHHHHCCCEEEEee
Confidence            344 6665 6899999983 44322   11      1334433  6789999999999999999998

>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-mannanase
species: Thermomonospora fusca [TaxId: 2021]

Probab=94.49  E-value=0.036  Score=44.18  Aligned_cols=51  Identities=8%  Similarity=0.135  Sum_probs=37.8

Q ss_pred             HHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          67 EKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        67 ~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      +.+ +.||++|+|+|-|. +....    .|.          ....+.++++|+.|.++||.||+|+-
T Consensus        36 ~~~-~~i~~~G~N~VRl~-~~~~~----~~~----------~~~~~~~~~~v~~a~~~Gi~vildlh   86 (302)
T d1bqca_          36 QAF-ADIKSHGANTVRVV-LSNGV----RWS----------KNGPSDVANVISLCKQNRLICMLEVH   86 (302)
T ss_dssp             THH-HHHHHTTCSEEEEE-ECCSS----SSC----------CCCHHHHHHHHHHHHHTTCEEEEEEG
T ss_pred             HHH-HHHHhcCCCEEEEe-ccccc----ccC----------cchHHHHHHHHHHHHHCCCEEEEEec
Confidence            456 88999999999974 21110    000          13468899999999999999999993

>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: A4 beta-galactosidase
species: Thermus thermophilus [TaxId: 274]

Probab=94.06  E-value=0.069  Score=42.37  Aligned_cols=69  Identities=16%  Similarity=0.248  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEcCc-ccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCccc
Q psy8670          63 KGMIEKLPEHLHDLGVGAVWISPI-FKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPNHTSNQH  141 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG~~~i~l~Pi-~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~~~  141 (224)
                      +-+.+.+ +.+|++|+|++-+.-+ ...-....|  ..|          .+.+.++|++|+++||++|+.+...   .-.
T Consensus        14 ~~~~~D~-~~~~~~G~n~vR~~i~~W~~iep~~G--~~~----------~~~~d~~i~~~~~~Gi~~iv~l~~~---~~P   77 (393)
T d1kwga2          14 ERWKEDA-RRMREAGLSHVRIGEFAWALLEPEPG--RLE----------WGWLDEAIATLAAEGLKVVLGTPTA---TPP   77 (393)
T ss_dssp             HHHHHHH-HHHHHHTCCEEEECTTCHHHHCSBTT--BCC----------CHHHHHHHHHHHTTTCEEEEECSTT---SCC
T ss_pred             HHHHHHH-HHHHHcCCCEEEecccchhhcCCCCC--ccC----------HHHHHHHHHHHHHCCCEEEEEcCCC---CCc
Confidence            3466778 9999999999998742 221000011  112          3688899999999999999998533   235


Q ss_pred             hhHHhh
Q psy8670         142 EWFKKS  147 (224)
Q Consensus       142 ~w~~~~  147 (224)
                      .|+.+.
T Consensus        78 ~w~~~~   83 (393)
T d1kwga2          78 KWLVDR   83 (393)
T ss_dssp             HHHHHH
T ss_pred             hhhhcc
Confidence            566543

>d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Amylomaltase MalQ
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.01  E-value=0.05  Score=47.27  Aligned_cols=58  Identities=19%  Similarity=0.309  Sum_probs=47.5

Q ss_pred             CCCCCCH-HHHHHHHHHHHHHcCCCeEEEcCcccCCC--CCCCCCccCCCCcCCCCCCHHHH
Q psy8670          56 GDGVGDL-KGMIEKLPEHLHDLGVGAVWISPIFKSPM--ADFGYDISDYLSFEPLFGDLKDF  114 (224)
Q Consensus        56 ~~~~g~l-~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~v~~~~G~~~~~  114 (224)
                      +-++|+| .++..-+ +.+++.|++.+.++|+.+...  .++.|++.+-+.+||-|=+.+++
T Consensus        16 ~~GIGDfG~~a~~~i-d~~a~~G~~~~QllPl~~t~~~~~~SPYsp~S~falNPlyIdle~L   76 (485)
T d1tz7a1          16 PYGIGDLGKEAYRFL-DFLKECGFSLWQVLPLNPTSLEAGNSPYSSNSLFAGNYVLIDPEEL   76 (485)
T ss_dssp             SSSSCCSSHHHHHHH-HHHHHHTCCEEECCCCSCCCGGGTTCTTSCSCSSSCCGGGSCTHHH
T ss_pred             CCCCCCHHHHHHHHH-HHHHHcCCCEEEecCCCCCCCCCCCCCcCcccchhcCHHHcCHHHh
Confidence            3468999 6666666 999999999999999998642  45889999999999998876655

>d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus [TaxId: 5087]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endocellulase EngI
species: Thermoascus aurantiacus [TaxId: 5087]

Probab=93.98  E-value=0.033  Score=45.13  Aligned_cols=58  Identities=14%  Similarity=0.176  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHcCCCeEEEcCcccCCC-CCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          66 IEKLPEHLHDLGVGAVWISPIFKSPM-ADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        66 ~~~l~~~l~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      .+.+ ++|+++|+|+|-|+=-++.-. ...++      .+++  ...+.++++|+.|.++||+||+|+
T Consensus        34 ~~di-~~l~~~G~N~VRlPv~~~~~~~~~~~~------~~~~--~~~~~l~~~v~~a~~~gl~vIlD~   92 (305)
T d1h1na_          34 PNTI-DTLISKGMNIFRVPFMMERLVPNSMTG------SPDP--NYLADLIATVNAITQKGAYAVVDP   92 (305)
T ss_dssp             HHHH-HHHHHTTCCEEEEEECHHHHSCSSTTS------CCCH--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHH-HHHHHCCCCEEEeeeeHHHhccCCCCC------ccCH--HHHHHHHHHHHHHHhcCCeEEEec
Confidence            3557 999999999999852122100 00111      1222  226789999999999999999998

>d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Amylomaltase MalQ
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=93.78  E-value=0.055  Score=47.47  Aligned_cols=68  Identities=25%  Similarity=0.283  Sum_probs=51.5

Q ss_pred             EEecccccCcCCCCCCCH-HHHHHHHHHHHHHcCCCeEEEcCcccCCC----CCCCCCccCCCCcCCCCCCHHHHH
Q psy8670          45 HLYPRSFKDSNGDGVGDL-KGMIEKLPEHLHDLGVGAVWISPIFKSPM----ADFGYDISDYLSFEPLFGDLKDFE  115 (224)
Q Consensus        45 ~i~~~~f~~~~~~~~g~l-~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~----~~~gY~~~d~~~v~~~~G~~~~~~  115 (224)
                      -+++-+...  +-|+|+| .+..+-+ +.+++.|++.++++|+.+...    .++.|++.+=+.+||-|=+.+++.
T Consensus        30 llh~~SLp~--~~GiGDfG~~a~~fv-d~l~~~G~~~wQiLPL~~t~~~~~~~~SPYs~~S~falNPlyI~l~~L~  102 (523)
T d1x1na1          30 LLHPTSFPG--PYGIGDLGPQAFKFL-DWLHLAGCSLWQVLPLVPPGKRGNEDGSPYSGQDANCGNTLLISLEELV  102 (523)
T ss_dssp             ECCGGGSCC--TTSSCCSSHHHHHHH-HHHHHHTCCEEECCCCSCBCCSSSCTTCTTSBSCSSSCCGGGSCHHHHH
T ss_pred             EecCccCCC--CCCCCcccHHHHHHH-HHHHHcCCCEEEEeCCCCCCCCCCCCCCCcchhcchhcCHHHcCHHHHh
Confidence            444555542  4578999 5655555 999999999999999987632    457899999999999988776653

>d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas haloplanktis [TaxId: 228]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase Cel5a
species: Pseudoalteromonas haloplanktis [TaxId: 228]

Probab=93.68  E-value=0.038  Score=44.24  Aligned_cols=55  Identities=11%  Similarity=0.185  Sum_probs=34.6

Q ss_pred             HHHH-HcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          71 EHLH-DLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        71 ~~l~-~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      ..|+ ++|+|+|-+. +.........+..      .+ -+..+.+.++|+.|+++||.||+|+-
T Consensus        45 ~~l~~~~g~N~VR~~-~~~~~~~~~~~~~------~~-~~~l~~ld~~v~~a~~~gi~vild~h  100 (293)
T d1tvna1          45 AKAKTEFNATLIRAA-IGHGTSTGGSLNF------DW-EGNMSRLDTVVNAAIAEDMYVIIDFH  100 (293)
T ss_dssp             HHHHHHHCCSEEEEE-EECCTTSTTSTTT------CH-HHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHhCCCcEEEEe-ccccccccccccc------Cc-HHHHHHHHHHHHHHHHcCCEEEecCc
Confidence            5565 5899999984 2211111111111      11 12367888999999999999999983

>d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase Cel5a
species: Erwinia chrysanthemi [TaxId: 556]

Probab=92.82  E-value=0.07  Score=42.56  Aligned_cols=56  Identities=16%  Similarity=0.209  Sum_probs=37.8

Q ss_pred             HHHHHHHH-HcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          67 EKLPEHLH-DLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        67 ~~l~~~l~-~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      +.+ +.|+ ++|+|+|-+ |+....  ..+|.      .+|. +..+.++++|+.|.++||.||+|+-
T Consensus        42 ~~~-~~l~~~~G~N~vR~-~~~~~~--~~~~~------~~~~-~~~~~ld~vv~~a~~~Giyvild~h   98 (291)
T d1egza_          42 DTV-ASLKKDWKSSIVRA-AMGVQE--SGGYL------QDPA-GNKAKVERVVDAAIANDMYAIIGWH   98 (291)
T ss_dssp             HHH-HHHHHTTCCCEEEE-EEECSS--TTSTT------TCHH-HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHH-HHHHHhcCCCEEEE-eccccc--cCCcc------cCcH-HHHHHHHHHHHHHHHCCCeEeeeec
Confidence            344 6676 589999997 444322  12222      2221 2367889999999999999999983

>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: YicI catalytic domain-like
domain: Putative glucosidase YicI, domain 2
species: Escherichia coli [TaxId: 562]

Probab=92.38  E-value=0.39  Score=38.89  Aligned_cols=75  Identities=19%  Similarity=0.320  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHcC--CCeEEEcCcccCCCCCCCCCccCCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Q psy8670          63 KGMIEKLPEHLHDLG--VGAVWISPIFKSPMADFGYDISDYLSFEP-LFGDLKDFETLKERLHALGIKILLDFVPNHTSN  139 (224)
Q Consensus        63 ~~~~~~l~~~l~~lG--~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~-~~G~~~~~~~lv~~~h~~gi~vilD~v~nh~~~  139 (224)
                      +.+.+.+ +.+++.|  ++.|++-.-+...     |.-.+| ..|+ +|-   +.++|++++|++|+++++-+.+ +++.
T Consensus        37 ~~v~~~~-~~~r~~~iP~d~i~iD~~w~~~-----~~~~~f-~~d~~~FP---dp~~~i~~l~~~G~~~~l~~~P-~i~~  105 (338)
T d2f2ha4          37 ATVNSFI-DGMAERNLPLHVFHFDCFWMKA-----FQWCDF-EWDPLTFP---DPEGMIRRLKAKGLKICVWINP-YIGQ  105 (338)
T ss_dssp             HHHHHHH-HHHHHTTCCCCEEEECGGGBCT-----TCCSSC-CBCTTTCS---CHHHHHHHHHHTTCEEEEEECS-EECT
T ss_pred             HHHHHHH-HHHHHcCCCcceEEEcCchhcC-----CCcCce-eeCcccCC---CHHHHHHHHHHCCCeEEEeecC-ccCC
Confidence            3455556 7778777  7788775544322     222233 3343 354   5789999999999999999877 5777


Q ss_pred             cchhHHhhh
Q psy8670         140 QHEWFKKSL  148 (224)
Q Consensus       140 ~~~w~~~~~  148 (224)
                      +++.+++..
T Consensus       106 ~~~~~~~~~  114 (338)
T d2f2ha4         106 KSPVFKELQ  114 (338)
T ss_dssp             TSTTHHHHH
T ss_pred             CChhHHHHH
Confidence            788777654

>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Glycosyl hydrolases family 35 catalytic domain
domain: Beta-galactosidase LacA, N-terminal domain
species: Penicillium sp. [TaxId: 5081]

Probab=91.93  E-value=0.064  Score=44.28  Aligned_cols=62  Identities=18%  Similarity=0.159  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670          64 GMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPN  135 (224)
Q Consensus        64 ~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~n  135 (224)
                      -+.+.| +-+|++|+|+|.+.=.+..-....|  ..||       ....++.+++++|+++||+||+..-+.
T Consensus        37 ~w~~~l-~~mk~~G~n~vr~~~~W~~~ep~~g--~~df-------~~~~~l~~~l~~a~~~Gl~vil~~g~~   98 (354)
T d1tg7a5          37 LYIDIF-EKVKALGFNCVSFYVDWALLEGNPG--HYSA-------EGIFDLQPFFDAAKEAGIYLLARPGPY   98 (354)
T ss_dssp             GHHHHH-HHHHTTTCCEEEEECCHHHHCSBTT--BCCC-------CGGGCSHHHHHHHHHHTCEEEEECCSC
T ss_pred             HHHHHH-HHHHHcCCCEEEEecchhccCCCCC--cccc-------cchhhHHHHHHHHHHcCCEEEEcCCCC
Confidence            366778 9999999999987432222101111  2232       345688999999999999999976543

>d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: beta-hexosaminidase A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.55  Score=38.58  Aligned_cols=75  Identities=17%  Similarity=0.268  Sum_probs=50.2

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCc--------CCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSF--------EPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v--------~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      +.+.+.+.+ +.++..++|.++|=   -+...++.+.+..|-.+        ...+=|.+|+++||+-|+++||+||-.+
T Consensus        16 ~~~~lk~~i-d~ma~~K~N~lhlH---ltD~~~~r~e~~~~p~l~~~ga~~~~~~~yT~~d~~elv~yA~~rgI~vIPEi   91 (362)
T d2gjxa1          16 PLSSILDTL-DVMAYNKLNVFHWH---LVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEF   91 (362)
T ss_dssp             CHHHHHHHH-HHHHHTTCCEEEEE---CCCSSCCCBCCSSCTHHHHHHSSCTTTSCBCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CHHHHHHHH-HHHHHcCCcEEEEE---EEcCCCceeccCCCchhhhcCCcCCCCCccCHHHHHHHHHHHHHcCCEEEecc
Confidence            566666666 99999999999871   11111233333333221        1223489999999999999999999877


Q ss_pred             C-CCCCCc
Q psy8670         133 V-PNHTSN  139 (224)
Q Consensus       133 v-~nh~~~  139 (224)
                      - |.|+..
T Consensus        92 D~PGH~~a   99 (362)
T d2gjxa1          92 DTPGHTLS   99 (362)
T ss_dssp             CCSSSCTT
T ss_pred             cccchhHH
Confidence            4 778753

>d1nowa1 c.1.8.6 (A:200-552) beta-hexosaminidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: beta-hexosaminidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.89  E-value=0.25  Score=40.55  Aligned_cols=75  Identities=17%  Similarity=0.224  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcC-------CCCCCHHHHHHHHHHHHHcCCEEEEecC
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFE-------PLFGDLKDFETLKERLHALGIKILLDFV  133 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~-------~~~G~~~~~~~lv~~~h~~gi~vilD~v  133 (224)
                      +.+.+.+.+ +.++..++|.++|=   -....++.+....|-.+-       ..+=|.+|+++|++-|+++||+||-.+-
T Consensus        16 ~~~~lk~~i-d~ma~~K~N~lhlH---l~D~~~~~~e~~~~P~l~~~g~~~~~~~yT~~d~~~lv~yA~~rgI~iiPEid   91 (353)
T d1nowa1          16 PVKIILKTL-DAMAFNKFNVLHWH---IVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFD   91 (353)
T ss_dssp             CHHHHHHHH-HHHHHTTCCEEEEE---CCCSSCCCBCCSSCHHHHHHHSSSTTSCBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CHHHHHHHH-HHHHHcCCcEEEEE---EecCCCceeccCCCcchhhcCCCCCCCCcCHHHHHHHHHHHHHCCCEEEeccc
Confidence            456666666 99999999988761   111111222222221110       1123789999999999999999996653


Q ss_pred             -CCCCCc
Q psy8670         134 -PNHTSN  139 (224)
Q Consensus       134 -~nh~~~  139 (224)
                       |.|+..
T Consensus        92 ~PGH~~~   98 (353)
T d1nowa1          92 TPGHTLS   98 (353)
T ss_dssp             ESSSCTT
T ss_pred             chhhHHH
Confidence             778754

>d1qbaa3 c.1.8.6 (A:338-780) Bacterial chitobiase (beta-N-acetylhexosaminidase) {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: Bacterial chitobiase (beta-N-acetylhexosaminidase)
species: Serratia marcescens [TaxId: 615]

Probab=90.28  E-value=0.4  Score=40.35  Aligned_cols=77  Identities=13%  Similarity=0.217  Sum_probs=47.8

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEc-----------CcccC---CCCCCCCCccCCCCcCCCC----------CCHHHHHH
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWIS-----------PIFKS---PMADFGYDISDYLSFEPLF----------GDLKDFET  116 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~-----------Pi~~~---~~~~~gY~~~d~~~v~~~~----------G~~~~~~~  116 (224)
                      +.+.|.+.| +.++..+.|.+++=           |-++.   ..+..+..........|.+          =|.+|+++
T Consensus        16 ~~~~ik~~i-d~ma~~KlN~lH~HltD~qg~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~ei~e   94 (443)
T d1qbaa3          16 KKDAVLRLL-DQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYID   94 (443)
T ss_dssp             CHHHHHHHH-HHHHHTTCCEEEEECBCSSCBCBCCTTCTHHHHTTTEECSCTTCSSSBCCCTTSCSSCEECCBCHHHHHH
T ss_pred             CHHHHHHHH-HHHHHcCCcEEEEEEecCCCceeeeCCcchhhhhcccccccccccccccccccCCCCCCCCccCHHHHHH
Confidence            566677777 99999999988772           11110   0000111222222222222          26899999


Q ss_pred             HHHHHHHcCCEEEEecC-CCCCC
Q psy8670         117 LKERLHALGIKILLDFV-PNHTS  138 (224)
Q Consensus       117 lv~~~h~~gi~vilD~v-~nh~~  138 (224)
                      ||+-|+++||+||-.+- |.|+.
T Consensus        95 iv~yA~~rgI~vIPEID~PGH~~  117 (443)
T d1qbaa3          95 IIKYAQARQIEVIPEIDMPAHAR  117 (443)
T ss_dssp             HHHHHHHTTCEEEEEEEESSSCH
T ss_pred             HHHHHHHcCCEEeeccchHHHHH
Confidence            99999999999996553 77875

>d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus actinomycetemcomitans [TaxId: 714]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: Dispersin B, DspB
species: Actinobacillus actinomycetemcomitans [TaxId: 714]

Probab=90.07  E-value=0.52  Score=38.32  Aligned_cols=74  Identities=15%  Similarity=0.240  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCc-------------CC----CCCCHHHHHHHHHHHHH
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSF-------------EP----LFGDLKDFETLKERLHA  123 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v-------------~~----~~G~~~~~~~lv~~~h~  123 (224)
                      +.+.+.+.+ +.++..++|.++|=-   ....++.+....|-.+             .+    .+=|.+|+++|++-|++
T Consensus        16 ~~~~ik~~i-d~ma~~K~N~lhlHl---tDdq~~~le~~~~p~l~~~~~~~~~~~~~~~~~~~~~yt~~e~~~lv~yA~~   91 (344)
T d1yhta1          16 SPEVIKSFI-DTISLSGGNFLHLHF---SDHENYAIESHLLNQRAENAVQGKDGIYINPYTGKPFLSYRQLDDIKAYAKA   91 (344)
T ss_dssp             CHHHHHHHH-HHHHHTTCCEEEEEC---BSSSCBCBCBTTTTBCGGGSEECTTSCEECTTTCCEEBCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHH-HHHHHcCCcEEEEEe---ecCCCceecccCCchhhhhccccCCCCCCCCCCCCcccCHHHHHHHHHHHHH
Confidence            456666666 999999999888710   0000111111111110             11    12278999999999999


Q ss_pred             cCCEEEEec-CCCCCC
Q psy8670         124 LGIKILLDF-VPNHTS  138 (224)
Q Consensus       124 ~gi~vilD~-v~nh~~  138 (224)
                      +||+||-.+ +|.|+.
T Consensus        92 rgI~viPeiD~PGH~~  107 (344)
T d1yhta1          92 KGIELIPELDSPNHMT  107 (344)
T ss_dssp             TTCEEEEEEEESSSCH
T ss_pred             cCCEEEeccchhhHHH
Confidence            999998544 377875

>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=87.38  E-value=0.48  Score=39.91  Aligned_cols=64  Identities=14%  Similarity=0.193  Sum_probs=44.8

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Q psy8670          59 VGDLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVP  134 (224)
Q Consensus        59 ~g~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~  134 (224)
                      ..+.+.+.+.| ..||++||++|-+ +++=.--...+=...||          +.++++++.+++.||||.+=+.+
T Consensus        25 ~~~~~~~~~~L-~~LK~aGV~gV~v-dVwWGivE~~~Pg~Ydw----------s~yd~l~~mv~~~GLKi~vvmsf   88 (417)
T d1vema2          25 VTNWETFENDL-RWAKQNGFYAITV-DFWWGDMEKNGDQQFDF----------SYAQRFAQSVKNAGMKMIPIIST   88 (417)
T ss_dssp             TSCHHHHHHHH-HHHHHTTEEEEEE-EEEHHHHTCSSTTCCCC----------HHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             cCCHHHHHHHH-HHHHHcCCCEEEE-eeeeeeeecCCCCccCc----------HHHHHHHHHHHHcCCeEEEEEEe
Confidence            46789999999 9999999999966 55411000011123343          78999999999999997554444

>d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Putative alpha-L-fucosidase, catalytic domain
domain: Putative alpha-L-fucosidase, catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.71  E-value=0.58  Score=38.42  Aligned_cols=64  Identities=11%  Similarity=0.138  Sum_probs=42.3

Q ss_pred             HHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEec
Q psy8670          68 KLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDF  132 (224)
Q Consensus        68 ~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~  132 (224)
                      +.+.-+|++|++.|-|+-=+..+-.-|.=..++|..++... ..+-+++|+++|+++||++-+=+
T Consensus       103 ~Wv~~ak~aGaky~vlTaKHHDGF~Lw~S~~t~~n~~~~~~-~rDiv~el~~A~rk~Glk~G~Yy  166 (350)
T d1hl9a2         103 EWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGP-KRDLVGDLAKAVREAGLRFGVYY  166 (350)
T ss_dssp             HHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTT-CSCHHHHHHHHHHHTTCEECEEE
T ss_pred             HHHHHHHHcCCCEEEEEEEecCCcccCCCCCCCCCCcCCCC-CCchHHHHHHHHHhcCCceeEEe
Confidence            33377899999999887644332111111334555555333 45779999999999999997644

>d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase {Streptomyces plicatus [TaxId: 1922]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: beta-N-acetylhexosaminidase
species: Streptomyces plicatus [TaxId: 1922]

Probab=86.07  E-value=1.1  Score=36.50  Aligned_cols=75  Identities=7%  Similarity=0.156  Sum_probs=47.3

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCc------------CCCCCCHHHHHHHHHHHHHcCCEE
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSF------------EPLFGDLKDFETLKERLHALGIKI  128 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v------------~~~~G~~~~~~~lv~~~h~~gi~v  128 (224)
                      +.+.|.+.+ +.++-..+|.+++==   +...++.+....|-.+            ...+=|.+|++++++-|.++||+|
T Consensus        16 ~~~~i~~~i-d~ma~~K~N~lh~Hl---~D~~~~r~e~~~~p~l~~~ga~~~~~~~~~~~yT~~di~~iv~ya~~rgI~v   91 (356)
T d1jaka1          16 GVDEVKRYI-DRVARYKYNKLHLHL---SDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEV   91 (356)
T ss_dssp             CHHHHHHHH-HHHHTTTCCEEEEEC---BCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHHHHTTCEE
T ss_pred             CHHHHHHHH-HHHHHcCCeEEEEEE---ecCCCcceeecCCchhhhccCccccCCCCCCccCHHHHHHHHHHHHHcCCeE
Confidence            556666666 999999999776621   1111122222222111            112336899999999999999999


Q ss_pred             EEecC-CCCCCc
Q psy8670         129 LLDFV-PNHTSN  139 (224)
Q Consensus       129 ilD~v-~nh~~~  139 (224)
                      |-.+- |.|+..
T Consensus        92 iPEid~PgH~~~  103 (356)
T d1jaka1          92 VPEIDMPGHTNA  103 (356)
T ss_dssp             EEECCCSSSCHH
T ss_pred             eecCCCcchhHH
Confidence            98773 678653

>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Five-domain beta-mannosidase, domain 3
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=81.39  E-value=2.9  Score=32.54  Aligned_cols=51  Identities=14%  Similarity=0.175  Sum_probs=36.4

Q ss_pred             CHHHHHHHHHHHHHHcCCCeEEEcCcccCCCCCCCCCccCCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEecCCC
Q psy8670          61 DLKGMIEKLPEHLHDLGVGAVWISPIFKSPMADFGYDISDYLSFEPLFGDLKDFETLKERLHALGIKILLDFVPN  135 (224)
Q Consensus        61 ~l~~~~~~l~~~l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~v~~~~G~~~~~~~lv~~~h~~gi~vilD~v~n  135 (224)
                      +-+.+...+ ..+|++|+|+|-+=.   .    +.+.  +              +.+.++|-+.||.|+.|+...
T Consensus        43 ~~e~~~~di-~l~ke~G~N~IR~~~---~----~~~p--~--------------~~f~d~cD~~GilV~~e~~~~   93 (348)
T d2je8a5          43 TTERYQTLF-RDMKEANMNMVRIWG---G----GTYE--N--------------NLFYDLADENGILVWQDFMFA   93 (348)
T ss_dssp             CHHHHHHHH-HHHHHTTCCEEEECT---T----SCCC--C--------------HHHHHHHHHHTCEEEEECSCB
T ss_pred             CHHHHHHHH-HHHHHcCCCEEecCC---C----CCCC--C--------------HHHHHHHHHCCCEEEeccchh
Confidence            556677777 999999999997711   0    0000  0              466888899999999998753