Psyllid ID: psy8680

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

MRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQADQQFLYGHNILKSGLARITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRYMTNMLD

cccEEEEEcHHHHHHHcccccccEEEEEEEEEEEEEccEEEEEEcccHHHcccccEEEEEEccccccccccccEEccccccccccccccccEEEEEEEcccccHHHHcccccccccccEEccccccccEEEEEEccccccEEEEccccHHHHHHcccccEEEEEccccEEEEEccccccc

cccEEEEEcHHHHHHHHcccHHccEEEEEEEccccccccEEEEEEHHHHHHHHHccEEEEccccccccccccHHHHccccEcccccHHHHHHEEEEEEccccccccEccccHHHccEEEEEcccccccEEEEEEccccccccEEEEccHHHHHcccccEEEEEEEcccHHHHccHHHHcc

MRDRVFYVSEKILTLAEnfgpdhllalgtcfgkftksgkfrlHITALSylapyaqfkvwvkpqadqqflygHNILKSGlaritentpkyqGVIFKVWVKPQAEQQFLYGHNILKSGlaritentpkYQGVIVLnmndvplgfGVAAKStaeckladplaivgfnqsDIGEYIRYMTNMLD

MRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQADQQFLYGHNILKSGLARITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLadplaivgfnqsdiGEYIRYMTNMLD

MRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQADQQFLYGHNILKSGLARITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRYMTNMLD

****VFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQADQQFLYGHNILKSGLARITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRYMT****

MRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQADQQFLYGHNILKSGLARITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRYMTNML*

MRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQADQQFLYGHNILKSGLARITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRYMTNMLD

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQADQQFLYGHNILKSGLARITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRYMTNMLD

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		180	2.2.26 [Sep-21-2011]
Q56P27		180	60S ribosome subunit biog	yes	N/A	0.744	0.744	0.546	4e-48
A4QND5		180	60S ribosome subunit biog	yes	N/A	0.744	0.744	0.546	5e-48
Q6DFH9		180	60S ribosome subunit biog	N/A	N/A	0.744	0.744	0.552	5e-48
Q5R9J1		180	60S ribosome subunit biog	yes	N/A	0.744	0.744	0.534	1e-47
Q9Y221		180	60S ribosome subunit biog	yes	N/A	0.744	0.744	0.534	1e-47
Q503P2		180	60S ribosome subunit biog	yes	N/A	0.738	0.738	0.549	3e-47
Q9CXK8		180	60S ribosome subunit biog	yes	N/A	0.744	0.744	0.534	6e-47
Q9WV50		180	60S ribosome subunit biog	yes	N/A	0.744	0.744	0.540	6e-47
Q4T2X8		180	60S ribosome subunit biog	N/A	N/A	0.738	0.738	0.532	2e-46
Q1MTQ9		180	60S ribosome subunit biog	yes	N/A	0.744	0.744	0.424	2e-37

>sp\|Q56P27\|NIP7_PIG 60S ribosome subunit biogenesis protein NIP7 homolog OS=Sus scrofa GN=NIP7 PE=2 SV=1	Back alignment and function desciption

 Score =  190 bits (483), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/172 (54%), Positives = 116/172 (67%), Gaps = 38/172 (22%)

Query: 3   DRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKP 62
           DRV+YVSEKIL LA N   D L++LGTCFGKFTK+ KFRLHITAL YLAPYA++KVW+KP
Sbjct: 42  DRVYYVSEKILKLAANISGDKLMSLGTCFGKFTKTHKFRLHITALDYLAPYAKYKVWIKP 101

Query: 63  QADQQFLYGHNILKSGLARITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITE 122
            A+Q FLYG+++LKSGL RITENT +YQ                                
Sbjct: 102 GAEQSFLYGNHVLKSGLGRITENTSQYQ-------------------------------- 129

Query: 123 NTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRY 174
                 GV+V +M D+PLGFGVAAKST +C+  DP+AIV F+Q+DIGEY+R+
Sbjct: 130 ------GVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRH 175

Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly.
Sus scrofa (taxid: 9823)

>sp\|A4QND5\|NIP7_XENTR 60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis GN=nip7 PE=2 SV=1	Back alignment and function description

>sp\|Q6DFH9\|NIP7_XENLA 60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis GN=nip7 PE=2 SV=1	Back alignment and function description

>sp\|Q5R9J1\|NIP7_PONAB 60S ribosome subunit biogenesis protein NIP7 homolog OS=Pongo abelii GN=NIP7 PE=2 SV=1	Back alignment and function description

>sp\|Q9Y221\|NIP7_HUMAN 60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens GN=NIP7 PE=1 SV=1	Back alignment and function description

>sp\|Q503P2\|NIP7_DANRE 60S ribosome subunit biogenesis protein NIP7 homolog OS=Danio rerio GN=nip7 PE=2 SV=1	Back alignment and function description

>sp\|Q9CXK8\|NIP7_MOUSE 60S ribosome subunit biogenesis protein NIP7 homolog OS=Mus musculus GN=Nip7 PE=2 SV=1	Back alignment and function description

>sp\|Q9WV50\|NIP7_RAT 60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus GN=Nip7 PE=2 SV=1	Back alignment and function description

>sp\|Q4T2X8\|NIP7_TETNG 60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis GN=nip7 PE=3 SV=1	Back alignment and function description

>sp\|Q1MTQ9\|NIP7_SCHPO 60S ribosome subunit biogenesis protein nip7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nip7 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		180
332021101		180	60S ribosome subunit biogenesis protein	0.777	0.777	0.578	9e-52
307183980		180	60S ribosome subunit biogenesis protein	0.744	0.744	0.581	3e-51
357626358		180	putative nuclear import 7-like protein [	0.744	0.744	0.540	4e-49
307199094		180	60S ribosome subunit biogenesis protein	0.777	0.777	0.550	4e-49
322799318		180	hypothetical protein SINV_06893 [Solenop	0.777	0.777	0.544	8e-49
383864079		180	PREDICTED: 60S ribosome subunit biogenes	0.777	0.777	0.539	1e-48
347967641		180	AGAP002330-PA [Anopheles gambiae str. PE	0.783	0.783	0.541	1e-48
251823887		180	nuclear import 7 [Acyrthosiphon pisum] g	0.777	0.777	0.522	1e-48
91095249		180	PREDICTED: similar to nuclear import 7 h	0.777	0.777	0.556	2e-48
156546920		180	PREDICTED: 60S ribosome subunit biogenes	0.777	0.777	0.539	2e-48

>gi\|332021101\|gb\|EGI61488.1\| 60S ribosome subunit biogenesis protein NIP7-like protein [Acromyrmex echinatior]	Back alignment and taxonomy information

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 103/178 (57%), Positives = 124/178 (69%), Gaps = 38/178 (21%)

Query: 2   RDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVK 61
           +DRV+YVSEKIL+LA N   DHLL+LGTCFGKFTKSGKFRLHITAL YLAPYAQ K+WVK
Sbjct: 41  KDRVYYVSEKILSLANNVESDHLLSLGTCFGKFTKSGKFRLHITALHYLAPYAQHKIWVK 100

Query: 62  PQADQQFLYGHNILKSGLARITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARIT 121
           P A+QQFLYG++I+KSGLARITE T +YQ                               
Sbjct: 101 PSAEQQFLYGNHIMKSGLARITEGTNQYQ------------------------------- 129

Query: 122 ENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRYMTNML 179
                  GV++ +MND+PLGFGVAAKSTA+CK ADP+A++ F+Q+DIGEYIR    +L
Sbjct: 130 -------GVVIFSMNDLPLGFGVAAKSTADCKHADPVAVICFHQADIGEYIRSEDTLL 180

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|307183980\|gb\|EFN70551.1\| 60S ribosome subunit biogenesis protein NIP7-like protein [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|357626358\|gb\|EHJ76476.1\| putative nuclear import 7-like protein [Danaus plexippus]	Back alignment and taxonomy information

>gi\|307199094\|gb\|EFN79804.1\| 60S ribosome subunit biogenesis protein NIP7-like protein [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|322799318\|gb\|EFZ20706.1\| hypothetical protein SINV_06893 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|383864079\|ref\|XP_003707507.1\| PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Megachile rotundata]	Back alignment and taxonomy information

>gi\|347967641\|ref\|XP_312639.4\| AGAP002330-PA [Anopheles gambiae str. PEST] gi\|333468366\|gb\|EAA08036.4\| AGAP002330-PA [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|251823887\|ref\|NP_001156512.1\| nuclear import 7 [Acyrthosiphon pisum] gi\|239792558\|dbj\|BAH72609.1\| ACYPI003208 [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|91095249\|ref\|XP_971558.1\| PREDICTED: similar to nuclear import 7 homolog [Tribolium castaneum] gi\|270016870\|gb\|EFA13316.1\| hypothetical protein TcasGA2_TC006900 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|156546920\|ref\|XP_001601662.1\| PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Nasonia vitripennis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		180
UNIPROTKB\|Q56P27		180	NIP7 "60S ribosome subunit bio	0.505	0.505	0.725	4.1e-33
UNIPROTKB\|E1BC14		180	NIP7 "60S ribosome subunit bio	0.505	0.505	0.725	5.2e-33
UNIPROTKB\|J9NWQ0		190	NIP7 "60S ribosome subunit bio	0.505	0.478	0.725	8.5e-33
UNIPROTKB\|Q9Y221		180	NIP7 "60S ribosome subunit bio	0.505	0.505	0.703	1.1e-32
ZFIN\|ZDB-GENE-050522-256		180	nip7 "nuclear import 7 homolog	0.505	0.505	0.714	3.7e-32
MGI\|MGI:1913414		180	Nip7 "nuclear import 7 homolog	0.505	0.505	0.703	4.7e-32
RGD\|620069		180	Nip7 "NIP7, nucleolar pre-rRNA	0.505	0.505	0.692	7.7e-32
UNIPROTKB\|E1C494		180	NIP7 "60S ribosome subunit bio	0.511	0.511	0.673	2.3e-30
FB\|FBgn0039233		180	CG7006 [Drosophila melanogaste	0.511	0.511	0.652	1.3e-29
WB\|WBGene00016607		180	C43E11.9 [Caenorhabditis elega	0.511	0.511	0.597	3.5e-27

UNIPROTKB\|Q56P27 NIP7 "60S ribosome subunit biogenesis protein NIP7 homolog" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 66/91 (72%), Positives = 79/91 (86%)

Query:     3 DRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKP 62
             DRV+YVSEKIL LA N   D L++LGTCFGKFTK+ KFRLHITAL YLAPYA++KVW+KP
Sbjct:    42 DRVYYVSEKILKLAANISGDKLMSLGTCFGKFTKTHKFRLHITALDYLAPYAKYKVWIKP 101

Query:    63 QADQQFLYGHNILKSGLARITENTPKYQGVI 93
              A+Q FLYG+++LKSGL RITENT +YQGV+
Sbjct:   102 GAEQSFLYGNHVLKSGLGRITENTSQYQGVV 132

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

UNIPROTKB\|E1BC14 NIP7 "60S ribosome subunit biogenesis protein NIP7 homolog" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|J9NWQ0 NIP7 "60S ribosome subunit biogenesis protein NIP7 homolog" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y221 NIP7 "60S ribosome subunit biogenesis protein NIP7 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050522-256 nip7 "nuclear import 7 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1913414 Nip7 "nuclear import 7 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|620069 Nip7 "NIP7, nucleolar pre-rRNA processing protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C494 NIP7 "60S ribosome subunit biogenesis protein NIP7 homolog" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

FB\|FBgn0039233 CG7006 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00016607 C43E11.9 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9WV50	NIP7_RAT	No assigned EC number	0.5406	0.7444	0.7444	yes	N/A
Q9Y221	NIP7_HUMAN	No assigned EC number	0.5348	0.7444	0.7444	yes	N/A
Q56P27	NIP7_PIG	No assigned EC number	0.5465	0.7444	0.7444	yes	N/A
A4QND5	NIP7_XENTR	No assigned EC number	0.5465	0.7444	0.7444	yes	N/A
B0G104	NIP7_DICDI	No assigned EC number	0.4244	0.7444	0.7486	yes	N/A
Q9CXK8	NIP7_MOUSE	No assigned EC number	0.5348	0.7444	0.7444	yes	N/A
Q5R9J1	NIP7_PONAB	No assigned EC number	0.5348	0.7444	0.7444	yes	N/A
Q1MTQ9	NIP7_SCHPO	No assigned EC number	0.4244	0.7444	0.7444	yes	N/A
Q503P2	NIP7_DANRE	No assigned EC number	0.5497	0.7388	0.7388	yes	N/A
Q08962	NIP7_YEAST	No assigned EC number	0.4011	0.7444	0.7403	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		180
COG1374		176	COG1374, NIP7, Protein involved in ribosomal bioge	7e-28
smart00359		76	smart00359, PUA, Putative RNA-binding Domain in Ps	2e-15
pfam03657		161	pfam03657, UPF0113, Uncharacterized protein family	1e-04
COG5270		202	COG5270, COG5270, PUA domain (predicted RNA-bindin	0.004

>gnl\|CDD\|224293 COG1374, NIP7, Protein involved in ribosomal biogenesis, contains PUA domain [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

 Score =  102 bits (255), Expect = 7e-28
 Identities = 58/169 (34%), Positives = 74/169 (43%), Gaps = 44/169 (26%)

Query: 5   VFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQA 64
           V+ V+E +  LAE+    +  +LGT FGK  K G FR H+ +L  LA  A          
Sbjct: 49  VYEVNEVVWKLAESIERKNPYSLGTFFGKRVKGGLFRKHVESLEELARIA---------- 98

Query: 65  DQQFLYGHNILKSGLARITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITENT 124
                                       I K +VK + E  FLYG N LK  +  I +  
Sbjct: 99  ----------------------------IIKNYVKERGEMLFLYG-NDLKDHVKEIIDEI 129

Query: 125 PKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIR 173
           P+  GV V NMNDVPLG GV A S +E    D   I      D+GEY+R
Sbjct: 130 PENGGVFVFNMNDVPLGIGVGALSPSE----DGRLIKN-ALKDVGEYLR 173

Length = 176

>gnl\|CDD\|214635 smart00359, PUA, Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase	Back alignment and domain information

>gnl\|CDD\|217662 pfam03657, UPF0113, Uncharacterized protein family (UPF0113)	Back alignment and domain information

>gnl\|CDD\|227595 COG5270, COG5270, PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		180
KOG3492\|consensus		180		100.0
PF03657		162	UPF0113: Uncharacterised protein family (UPF0113);	100.0
COG1374		176	NIP7 Protein involved in ribosomal biogenesis, con	100.0
smart00359		77	PUA Putative RNA-binding Domain in PseudoUridine s	98.75
KOG3492\|consensus		180		98.07
TIGR00451		107	unchar_dom_2 uncharacterized domain 2. This unchar	98.01
PRK14560		160	putative RNA-binding protein; Provisional	97.84
PF01472		74	PUA: PUA domain; InterPro: IPR002478 The PUA (Pseu	97.71
TIGR03684		150	arCOG00985 arCOG04150 universal archaeal PUA-domai	97.67
PRK13794		479	hypothetical protein; Provisional	97.55
PF03657		162	UPF0113: Uncharacterised protein family (UPF0113);	97.34
PRK13534		639	7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr	97.22
PRK13795		636	hypothetical protein; Provisional	96.94
COG5270		202	PUA domain (predicted RNA-binding domain) [Transla	96.4
PF13636		102	Nol1_Nop2_Fmu_2: pre-rRNA processing and ribosome	96.0
COG1370		155	Prefoldin, molecular chaperone implicated in de no	95.19
TIGR00432		540	arcsn_tRNA_tgt tRNA-guanine transglycosylase, arch	94.96
PRK04270		300	H/ACA RNA-protein complex component Cbf5p; Reviewe	94.74
PRK05429		372	gamma-glutamyl kinase; Provisional	93.88
TIGR01027		363	proB glutamate 5-kinase. Bacterial ProB proteins h	92.52
COG2016		161	Predicted RNA-binding protein (contains PUA domain	92.07
PRK11933		470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	92.03
TIGR00425		322	CBF5 rRNA pseudouridine synthase, putative. This f	91.45
PRK13402		368	gamma-glutamyl kinase; Provisional	80.72

>KOG3492\|consensus	Back alignment and domain information

Probab=100.00  E-value=3.2e-78  Score=495.23  Aligned_cols=141  Identities=63%  Similarity=1.114  Sum_probs=139.9

Q ss_pred             CCCeEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhcccccceeEEeccccchhhhccccccccccc
Q psy8680           1 MRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQADQQFLYGHNILKSGLA   80 (180)
Q Consensus         1 ~~~RVyYvse~il~~a~~~~~d~LlslGtc~GKFtKsgKFrl~ItaL~~LA~ya~~KVWvKp~~~~~~~~~~~~~~~~~a   80 (180)
                      |+||||||||.++++|++|+|+||+|+||||||||||||||||||||+||||||+||||+||                  
T Consensus        40 hkdRVyyvsEr~~k~a~~isr~~L~s~Gtc~GKFTKt~kfrlhitaL~~La~~Ak~KvWiKp------------------  101 (180)
T KOG3492|consen   40 HKDRVYYVSERIMKLAACISRKNLVSLGTCFGKFTKTGKFRLHITALDYLAPYAKYKVWIKP------------------  101 (180)
T ss_pred             eCceEEeehHHHHHHHhhhcccceeEEeEEEeeeeccceEEEeeeehhhhhhhhheeEEecc------------------
Confidence            79999999999999999999999999999999999999999999999999999999999999                  


Q ss_pred             eeccCCCCccceeeEeeecCcccceeecccccccccceeecccCCCcceEEEEecCCCceeeEeeecchhHhhhcCCCeE
Q psy8680          81 RITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAI  160 (180)
Q Consensus        81 ~i~e~~~~~~~~~~~~~~~~~aE~~FLYG~~vlKs~l~ritentp~~~GVvV~nmndvpLGFGvaakst~e~k~~dp~~i  160 (180)
                                          ++||+|||||||||||++||||++|++||||||||||+||||||+||||++||++||++|
T Consensus       102 --------------------~~Em~flYGNhvlKs~vgRitd~~p~~~GVvVysm~DvPLGFGv~Akst~d~r~~dp~ai  161 (180)
T KOG3492|consen  102 --------------------NAEMQFLYGNHVLKSGVGRITDGIPQHQGVVVYSMNDVPLGFGVTAKSTQDCRKADPTAI  161 (180)
T ss_pred             --------------------CcccceeecccchhcccceecCCCCCcceEEEEeccCCccccceeecCcccccccCCcEE
Confidence                                999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecccceeeeecccccC
Q psy8680         161 VGFNQSDIGEYIRYMTNML  179 (180)
Q Consensus       161 VvfnqaDiGEYlR~e~~~~  179 (180)
                      |+|||+|+|||||+|+++|
T Consensus       162 v~~hQaDiGEYlR~E~~l~  180 (180)
T KOG3492|consen  162 VVLHQADIGEYLRNEDTLF  180 (180)
T ss_pred             EEEEecchHHHhhcccccC
Confidence            9999999999999999986

>PF03657 UPF0113: Uncharacterised protein family (UPF0113); InterPro: IPR005155 This entry represents PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain containing proteins such as the ribosomal biogenesis factor NIP7 [, ]	Back alignment and domain information

>COG1374 NIP7 Protein involved in ribosomal biogenesis, contains PUA domain [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase	Back alignment and domain information

>KOG3492\|consensus	Back alignment and domain information

>TIGR00451 unchar_dom_2 uncharacterized domain 2	Back alignment and domain information

>PRK14560 putative RNA-binding protein; Provisional	Back alignment and domain information

>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []	Back alignment and domain information

>TIGR03684 arCOG00985 arCOG04150 universal archaeal PUA-domain protein	Back alignment and domain information

>PRK13794 hypothetical protein; Provisional	Back alignment and domain information

>PF03657 UPF0113: Uncharacterised protein family (UPF0113); InterPro: IPR005155 This entry represents PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain containing proteins such as the ribosomal biogenesis factor NIP7 [, ]	Back alignment and domain information

>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional	Back alignment and domain information

>PRK13795 hypothetical protein; Provisional	Back alignment and domain information

>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF13636 Nol1_Nop2_Fmu_2: pre-rRNA processing and ribosome biogenesis; PDB: 3M4X_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A	Back alignment and domain information

>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming	Back alignment and domain information

>PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed	Back alignment and domain information

>PRK05429 gamma-glutamyl kinase; Provisional	Back alignment and domain information

>TIGR01027 proB glutamate 5-kinase	Back alignment and domain information

>COG2016 Predicted RNA-binding protein (contains PUA domain) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed	Back alignment and domain information

>TIGR00425 CBF5 rRNA pseudouridine synthase, putative	Back alignment and domain information

>PRK13402 gamma-glutamyl kinase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		180
1sqw_A		188	Crystal Structure Of Kd93, A Novel Protein Expresse		8e-49
1t5y_A		190	Crystal Structure Of Northeast Structural Genomics		5e-47

>pdb|1SQW|A Chain A, Crystal Structure Of Kd93, A Novel Protein Expressed In The Human Pro Length = 188

Back alignment and structure

Iteration: 1

Score = 189 bits (480), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 93/171 (54%), Positives = 115/171 (67%), Gaps = 38/171 (22%) Query: 3 DRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKP 62 DRV+YVSEKI+ LA N D L++LGTCFGKFTK+ KFRLH+TAL YLAPYA++KV Sbjct: 42 DRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKV---- 97 Query: 63 QADQQFLYGHNILKSGLARITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITE 122 W+KP AEQ FLYG+++LKSGL RITE Sbjct: 98 ----------------------------------WIKPGAEQSFLYGNHVLKSGLGRITE 123 Query: 123 NTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIR 173 NT +YQGV+V +M D+PLGFGVAAKST +C+ DP+AIV F+Q+DIGEY+R Sbjct: 124 NTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVR 174

PyMOL of 1sqw

>pdb|1T5Y|A Chain A, Crystal Structure Of Northeast Structural Genomics Consortium Target Hr2118: A Human Homolog Of Saccharomyces Cerevisiae Nip7p Length = 190

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		180
1sqw_A		188	Saccharomyces cerevisiae NIP7P homolog; PUA, unkno	4e-70
2p38_A		166	Protein involved in ribosomal biogenesis; two alph	2e-31
1q7h_A		153	Conserved hypothetical protein; structural genomic	1e-04

>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A Length = 188	Back alignment and structure

 Score =  209 bits (534), Expect = 4e-70
 Identities = 93/172 (54%), Positives = 115/172 (66%), Gaps = 38/172 (22%)

Query: 2   RDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVK 61
            DRV+YVSEKI+ LA N   D L++LGTCFGKFTK+ KFRLH+TAL YLAPYA+      
Sbjct: 41  NDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAK------ 94

Query: 62  PQADQQFLYGHNILKSGLARITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARIT 121
                                           +KVW+KP AEQ FLYG+++LKSGL RIT
Sbjct: 95  --------------------------------YKVWIKPGAEQSFLYGNHVLKSGLGRIT 122

Query: 122 ENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIR 173
           ENT +YQGV+V +M D+PLGFGVAAKST +C+  DP+AIV F+Q+DIGEY+R
Sbjct: 123 ENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVR 174

PyMOL of 1sqw

>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi} Length = 166	Back alignment and structure

>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2 Length = 153	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		180
1sqw_A		188	Saccharomyces cerevisiae NIP7P homolog; PUA, unkno	100.0
2p38_A		166	Protein involved in ribosomal biogenesis; two alph	100.0
1q7h_A		153	Conserved hypothetical protein; structural genomic	99.63
2q07_A		306	Uncharacterized protein AF0587; monomer, structura	97.45
3zv0_C		195	H/ACA ribonucleoprotein complex subunit 4; cell cy	97.17
1sqw_A		188	Saccharomyces cerevisiae NIP7P homolog; PUA, unkno	97.1
3d79_A		179	PUA domain, putative uncharacterized protein PH073	97.09
2cx0_A		187	Hypothetical protein APE0525; PUA domain, structur	96.99
1iq8_A		582	Archaeosine tRNA-guanine transglycosylase; (alpha/	96.66
3r90_A		188	Malignant T cell-amplified sequence 1; structural	96.52
3u28_A		400	H/ACA ribonucleoprotein complex subunit 4; pseudou	95.03
2p38_A		166	Protein involved in ribosomal biogenesis; two alph	93.36
2j5v_A		367	Glutamate 5-kinase; proline biosynthesis, gamma gl	93.13
2frx_A		479	Hypothetical protein YEBU; rossmann-type S-adenosy	92.96
3m4x_A		456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	92.61
3m6w_A		464	RRNA methylase; rRNA methyltransferase, 5-methylcy	89.2
3c0k_A		396	UPF0064 protein YCCW; PUA domain, adoMet dependent	87.65
2aus_C		334	Pseudouridine synthase; isomerase, structural prot	86.88
2apo_A		357	Probable tRNA pseudouridine synthase B; protein-pr	86.06

>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A	Back alignment and structure

Probab=100.00  E-value=9.4e-66  Score=420.85  Aligned_cols=141  Identities=66%  Similarity=1.137  Sum_probs=136.1

Q ss_pred             CCCeEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhcccccceeEEeccccchhhhccccccccccc
Q psy8680           1 MRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQADQQFLYGHNILKSGLA   80 (180)
Q Consensus         1 ~~~RVyYvse~il~~a~~~~~d~LlslGtc~GKFtKsgKFrl~ItaL~~LA~ya~~KVWvKp~~~~~~~~~~~~~~~~~a   80 (180)
                      |++||||||++|+++|++|+|++|+|+|||||||||+|||+|||||+++||||+++||||||                  
T Consensus        40 ~~~rVyyv~~~i~~~a~~i~r~~l~s~Gtc~Gkftk~gkF~L~It~l~~La~~~~~kV~Vk~------------------  101 (188)
T 1sqw_A           40 HNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKP------------------  101 (188)
T ss_dssp             ETTEEEEEEHHHHHTTTSSCHHHHHHHSEEEEEECTTSCEEECGGGHHHHGGGCSCEEEECH------------------
T ss_pred             cCCEEEEECHHHHHHHhcCCcCCeeEeeeEEEEEecCCcEEEchhHHHHhhhccCcEEEECC------------------
Confidence            58999999999999999999999999999999999999999999999999999999999999                  


Q ss_pred             eeccCCCCccceeeEeeecCcccceeecccccccccceeecccCCCcceEEEEecCCCceeeEeeecchhHhhhcCCCeE
Q psy8680          81 RITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAI  160 (180)
Q Consensus        81 ~i~e~~~~~~~~~~~~~~~~~aE~~FLYG~~vlKs~l~ritentp~~~GVvV~nmndvpLGFGvaakst~e~k~~dp~~i  160 (180)
                                          ++||+||||+||+|+||.||||++|+++||+|+||||+|||||++++||+||+.+||+++
T Consensus       102 --------------------~~E~~flyG~nVfk~~V~~i~e~i~~~~~VvV~n~~d~pLG~G~a~~s~~e~~~~~~~~~  161 (188)
T 1sqw_A          102 --------------------GAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAI  161 (188)
T ss_dssp             --------------------HHHHHHTTTCCEEGGGEEEECTTCCTTCEEEEEETTCCEEEEEEESSCHHHHHHSCTTSE
T ss_pred             --------------------CceeeEEeccchhHHhhhhcCCCCCCCCEEEEEeCCCCEEEEEEeecCHHHHHhcCCCcE
Confidence                                999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecccceeeeecccccC
Q psy8680         161 VGFNQSDIGEYIRYMTNML  179 (180)
Q Consensus       161 VvfnqaDiGEYlR~e~~~~  179 (180)
                      ||+||+|+|||||+|++++
T Consensus       162 vv~~q~D~GeYLR~e~~~~  180 (188)
T 1sqw_A          162 VVFHQADIGEYVRHEETLT  180 (188)
T ss_dssp             EEEEEEEGGGTCSCC----
T ss_pred             EEEEcccceeeeEcCceee
Confidence            9999999999999999986

PyMOL of 1sqw

>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}	Back alignment and structure

>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2	Back alignment and structure

>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5	Back alignment and structure

>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}	Back alignment and structure

>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A	Back alignment and structure

>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii}	Back alignment and structure

>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1 d.17.6.4 PDB: 2cx1_A* 1zs7_A	Back alignment and structure

>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A	Back alignment and structure

>3r90_A Malignant T cell-amplified sequence 1; structural genomics consortium, surface entropy reduction, S binding protein; 1.70A {Homo sapiens}	Back alignment and structure

>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A	Back alignment and structure

>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}	Back alignment and structure

>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A	Back alignment and structure

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}	Back alignment and structure

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}	Back alignment and structure

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*	Back alignment and structure

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}	Back alignment and structure

>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A	Back alignment and structure

>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		180
d1sqwa1		76	b.122.1.1 (A:95-170) Nip7p homolog, C-terminal dom	6e-46
d1sqwa2		94	d.17.6.3 (A:1-94) Nip7p homolog, N-terminal domain	3e-30
d1iq8a3		77	b.122.1.1 (A:506-582) Archaeosine tRNA-guanine tra	3e-04

>d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 76	Back information, alignment and structure


class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Nip7p homolog, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (363), Expect = 6e-46
 Identities = 52/76 (68%), Positives = 66/76 (86%)

Query: 94  FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECK 153
           +KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+PLGFGVAAKST +C+
Sbjct: 1   YKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCR 60

Query: 154 LADPLAIVGFNQSDIG 169
             DP+AIV F+Q+DIG
Sbjct: 61  KVDPMAIVVFHQADIG 76

PyMOL of d1sqwa1

>d1sqwa2 d.17.6.3 (A:1-94) Nip7p homolog, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 94	Back information, alignment and structure

>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine transglycosylase, C3 domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 77	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		180
d1sqwa1		76	Nip7p homolog, C-terminal domain {Human (Homo sapi	100.0
d1sqwa2		94	Nip7p homolog, N-terminal domain {Human (Homo sapi	99.95
d1sqwa1		76	Nip7p homolog, C-terminal domain {Human (Homo sapi	98.67
d2ey4a1		84	Pseudouridine synthase II TruB, C-terminal domain	98.36
d1iq8a3		77	Archaeosine tRNA-guanine transglycosylase, C3 doma	98.31
d2apoa1		85	Pseudouridine synthase II TruB, C-terminal domain	98.19
d1q7ha1		85	Hypothetical protein Ta1423, C-terminal domain {Ar	97.96
d1r3ea1		81	Pseudouridine synthase II TruB, C-terminal domain	97.63
d2cx1a1		93	Hypothetical protein APE0525, C-terminal domain {A	96.87
d2as0a1		72	Hypothetical protein PH1915, N-terminal domain {Ar	96.48
d2q07a1		68	Uncharacterized protein AF0587 {Archaeoglobus fulg	95.68

>d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Nip7p homolog, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-47  Score=274.20  Aligned_cols=75  Identities=69%  Similarity=1.190  Sum_probs=71.7

Q ss_pred             EeeecCcccceeecccccccccceeecccCCCcceEEEEecCCCceeeEeeecchhHhhhcCCCeEEEEecccce
Q psy8680          95 KVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIG  169 (180)
Q Consensus        95 ~~~~~~~aE~~FLYG~~vlKs~l~ritentp~~~GVvV~nmndvpLGFGvaakst~e~k~~dp~~iVvfnqaDiG  169 (180)
                      |||+||++||+|||||||+||||+|||||||+|+|||||||||+||||||+||||+|||++||++||+|||+|+|
T Consensus         2 KVWvKp~~E~~FLYGn~VlK~~l~rite~~p~~~GVvV~sm~D~PLGFGvaakst~e~r~~dp~~ivv~hQaDiG   76 (76)
T d1sqwa1           2 KVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIG   76 (76)
T ss_dssp             EEEECHHHHHHHTTTCCEEGGGEEEECTTCCTTCEEEEEETTCCEEEEEEESSCHHHHHHSCTTSEEEEEEEEGG
T ss_pred             cEEecCCcccceeeccchhhhhcccccCCCCCCceEEEEeCCCCccceeeeccCHHHHhhCCCccEEEEEecCCC
Confidence            445555999999999999999999999999999999999999999999999999999999999999999999998

PyMOL of d1sqwa1

>d1sqwa2 d.17.6.3 (A:1-94) Nip7p homolog, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ey4a1 b.122.1.1 (A:253-336) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine transglycosylase, C3 domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2apoa1 b.122.1.1 (A:247-331) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423, C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d1r3ea1 b.122.1.1 (A:238-318) Pseudouridine synthase II TruB, C-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2cx1a1 b.122.1.1 (A:91-183) Hypothetical protein APE0525, C-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d2as0a1 b.122.1.9 (A:1-72) Hypothetical protein PH1915, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2q07a1 b.122.1.1 (A:460-527) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure