Psyllid ID: psy8686

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MLSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLLV
Secondary Structure (PSIPRED)
ccccccEEEEEEcccccccccccEEcccEEEEEEccccEEEEEEEccccccccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHEEEEcccccccEEEEEEEcccccccEEcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEccccccHHHccccccEEEEEcccccccccEEEEcccccccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHEcccccccHEHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHEEc
Coil and Loop (DISEMBL)
MLSLSNTLDlilkdeaggdlttfiTNGEWYLLVCKQISSkknevqyeccpetyvdITFTIQIRRRTLYYFFNLIVPCVLISSMallgftlppdsgeklTLVYKGFLRtsaffnnsvqctrdfsglpliLSGVTILLSLTVFLNLVAesmpttsdavpligthHRLIFLIIYYLLLV
Flexible Loop (DISEMBL)
MLSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTsdavpligtHHRLIFLIIYYLLLV
Low Complexity Region (SEG)
MLSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRlifliiyylllV
Disordered region (IsUnstruct)
*******LDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLL*
Disordered Region (DISOPRED)
**SLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLLV
Disordered Region (DISEMBL)
MLSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLLV
Disordered Region (DISPRO)
MLSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLLV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q05941	502	Neuronal acetylcholine re	yes	N/A	0.727	0.254	0.445	4e-30
P49582	502	Neuronal acetylcholine re	yes	N/A	0.727	0.254	0.445	4e-30
P22770	502	Neuronal acetylcholine re	no	N/A	0.727	0.254	0.451	1e-29
P54131	499	Neuronal acetylcholine re	yes	N/A	0.727	0.256	0.445	2e-29
Q494W8	412	CHRNA7-FAM7A fusion prote	no	N/A	0.727	0.310	0.445	2e-29
P36544	502	Neuronal acetylcholine re	no	N/A	0.727	0.254	0.445	2e-29
Q866A2	502	Neuronal acetylcholine re	yes	N/A	0.727	0.254	0.439	7e-29
P48180	498	Acetylcholine receptor su	no	N/A	0.670	0.236	0.434	2e-27
A8WQK3	499	Acetylcholine receptor su	N/A	N/A	0.670	0.236	0.427	6e-27
Q8JFN7	572	Neuronal acetylcholine re	N/A	N/A	0.698	0.215	0.398	6e-26

>sp|Q05941|ACHA7_RAT Neuronal acetylcholine receptor subunit alpha-7 OS=Rattus norvegicus GN=Chrna7 PE=1 SV=2

 Score =  130 bits (327), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 100/164 (60%), Gaps = 36/164 (21%)

Query: 7   TLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRT 66
           +LDL +++    D++++I NGEW L+    I  K+NE  YECC E Y D+T+T+ +RRRT
Sbjct: 177 SLDLQMQE---ADISSYIPNGEWDLM---GIPGKRNEKFYECCKEPYPDVTYTVTMRRRT 230

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           LYY  NL++PCVLIS++ALL F LP DSGEK++L                          
Sbjct: 231 LYYGLNLLIPCVLISALALLVFLLPADSGEKISL-------------------------- 264

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
               G+T+LLSLTVF+ LVAE MP TSD+VPLI  +     +I+
Sbjct: 265 ----GITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIV 304

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.
Rattus norvegicus (taxid: 10116)

>sp|P49582|ACHA7_MOUSE Neuronal acetylcholine receptor subunit alpha-7 OS=Mus musculus GN=Chrna7 PE=2 SV=1

 Score =  130 bits (327), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 100/164 (60%), Gaps = 36/164 (21%)

Query: 7   TLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRT 66
           +LDL +++    D++++I NGEW L+    I  K+NE  YECC E Y D+T+T+ +RRRT
Sbjct: 177 SLDLQMQE---ADISSYIPNGEWDLM---GIPGKRNEKFYECCKEPYPDVTYTVTMRRRT 230

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           LYY  NL++PCVLIS++ALL F LP DSGEK++L                          
Sbjct: 231 LYYGLNLLIPCVLISALALLVFLLPADSGEKISL-------------------------- 264

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
               G+T+LLSLTVF+ LVAE MP TSD+VPLI  +     +I+
Sbjct: 265 ----GITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIV 304

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.

Mus musculus (taxid: 10090)

>sp|P22770|ACHA7_CHICK Neuronal acetylcholine receptor subunit alpha-7 OS=Gallus gallus GN=CHRNA7 PE=1 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 99/164 (60%), Gaps = 36/164 (21%)

Query: 7   TLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRT 66
           +LDL +++    D++ +I+NGEW L+    I  K+ E  YECC E Y DITFT+ +RRRT
Sbjct: 177 SLDLQMQE---ADISGYISNGEWDLV---GIPGKRTESFYECCKEPYPDITFTVTMRRRT 230

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           LYY  NL++PCVLIS++ALL F LP DSGEK++L                          
Sbjct: 231 LYYGLNLLIPCVLISALALLVFLLPADSGEKISL-------------------------- 264

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
               G+T+LLSLTVF+ LVAE MP TSD+VPLI  +     +I+
Sbjct: 265 ----GITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIV 304

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Gallus gallus (taxid: 9031)

>sp|P54131|ACHA7_BOVIN Neuronal acetylcholine receptor subunit alpha-7 OS=Bos taurus GN=CHRNA7 PE=2 SV=1

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 99/164 (60%), Gaps = 36/164 (21%)

Query: 7   TLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRT 66
           +LDL +++    D++ +I NGEW L+    +  K++E  YECC E Y D+TFT+ IRRRT
Sbjct: 174 SLDLQMQE---ADISGYIPNGEWDLV---GVLGKRSEKFYECCKEPYPDVTFTVSIRRRT 227

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           LYY  NL++PCVLIS++ALL F LP DSGEK++L                          
Sbjct: 228 LYYGLNLLIPCVLISALALLVFLLPADSGEKISL-------------------------- 261

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
               G+T+LLSLTVF+ LVAE MP TSD+VPLI  +     +I+
Sbjct: 262 ----GITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIV 301

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.

Bos taurus (taxid: 9913)

>sp|Q494W8|CRFM7_HUMAN CHRNA7-FAM7A fusion protein OS=Homo sapiens GN=CHRFAM7A PE=2 SV=1

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 99/164 (60%), Gaps = 36/164 (21%)

Query: 7   TLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRT 66
           +LDL +++    D++ +I NGEW L+    I  K++E  YECC E Y D+TFT+ +RRRT
Sbjct: 87  SLDLQMQE---ADISGYIPNGEWDLV---GIPGKRSERFYECCKEPYPDVTFTVTMRRRT 140

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           LYY  NL++PCVLIS++ALL F LP DSGEK++L                          
Sbjct: 141 LYYGLNLLIPCVLISALALLVFLLPADSGEKISL-------------------------- 174

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
               G+T+LLSLTVF+ LVAE MP TSD+VPLI  +     +I+
Sbjct: 175 ----GITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIV 214

Homo sapiens (taxid: 9606)

>sp|P36544|ACHA7_HUMAN Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 99/164 (60%), Gaps = 36/164 (21%)

Query: 7   TLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRT 66
           +LDL +++    D++ +I NGEW L+    I  K++E  YECC E Y D+TFT+ +RRRT
Sbjct: 177 SLDLQMQE---ADISGYIPNGEWDLV---GIPGKRSERFYECCKEPYPDVTFTVTMRRRT 230

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           LYY  NL++PCVLIS++ALL F LP DSGEK++L                          
Sbjct: 231 LYYGLNLLIPCVLISALALLVFLLPADSGEKISL-------------------------- 264

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
               G+T+LLSLTVF+ LVAE MP TSD+VPLI  +     +I+
Sbjct: 265 ----GITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIV 304

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.

Homo sapiens (taxid: 9606)

>sp|Q866A2|ACHA7_MACMU Neuronal acetylcholine receptor subunit alpha-7 OS=Macaca mulatta GN=CHRNA7 PE=2 SV=1

 Score =  126 bits (316), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 99/164 (60%), Gaps = 36/164 (21%)

Query: 7   TLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRT 66
           +LDL +++    D++ +I +GEW L+    I  K++E  YECC E Y D+TFT+ +RRRT
Sbjct: 177 SLDLQMQE---ADISGYIPSGEWDLV---GIPGKRSEKFYECCKEPYPDVTFTVTMRRRT 230

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           LYY  NL++PCVLIS++ALL F LP DSGEK++L                          
Sbjct: 231 LYYGLNLLIPCVLISALALLVFLLPADSGEKISL-------------------------- 264

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
               G+T+LLSLTVF+ LVAE MP TSD+VPLI  +     +I+
Sbjct: 265 ----GITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIV 304

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.

Macaca mulatta (taxid: 9544)

>sp|P48180|ACH1_CAEEL Acetylcholine receptor subunit alpha-type acr-16 OS=Caenorhabditis elegans GN=acr-16 PE=2 SV=1

 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 92/152 (60%), Gaps = 34/152 (22%)

Query: 10  LILKDEAGG-DLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLY 68
           L L+   GG D++ +I+NGEW L +    + ++NE  Y+CCPE Y D+ F + +RRRTLY
Sbjct: 175 LDLQPATGGFDISEYISNGEWALPL---TTVERNEKFYDCCPEPYPDVHFYLHMRRRTLY 231

Query: 69  YFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLI 128
           Y FNLI+PC+L + M LLGFTLPPD+GEK+TL                            
Sbjct: 232 YGFNLIMPCILTTLMTLLGFTLPPDAGEKITL---------------------------- 263

Query: 129 LSGVTILLSLTVFLNLVAESMPTTSDAVPLIG 160
              +T+LLS+  FL++V+E  P TS+AVPL+G
Sbjct: 264 --QITVLLSICFFLSIVSEMSPPTSEAVPLLG 293

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane (By similarity). A subunit of the levamisole-insensitive nicotinic receptor.

Caenorhabditis elegans (taxid: 6239)

>sp|A8WQK3|ACH1_CAEBR Acetylcholine receptor subunit alpha-type acr-16 OS=Caenorhabditis briggsae GN=acr-16 PE=3 SV=2

 Score =  120 bits (300), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 91/152 (59%), Gaps = 34/152 (22%)

Query: 10  LILKDEAGG-DLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLY 68
           L L+   GG D++ ++ NGEW L +    + ++NE  Y+CCPE Y D+ F + +RRRTLY
Sbjct: 175 LDLQPATGGFDISEYLPNGEWALPL---TTVERNEKFYDCCPEPYPDVHFYLHMRRRTLY 231

Query: 69  YFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLI 128
           Y FNLI+PC+L + M LLGFTLPPD+GEK+TL                            
Sbjct: 232 YGFNLIMPCILTTLMTLLGFTLPPDAGEKITL---------------------------- 263

Query: 129 LSGVTILLSLTVFLNLVAESMPTTSDAVPLIG 160
              +T+LLS+  FL++V+E  P TS+AVPL+G
Sbjct: 264 --QITVLLSICFFLSIVSEMSPPTSEAVPLLG 293

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. A subunit of the levamisole-insensitive nicotinic receptor.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q8JFN7|ACH91_ONCMY Neuronal acetylcholine receptor subunit alpha-9-I OS=Oncorhynchus mykiss GN=nachra9 PE=2 SV=1

 Score =  116 bits (291), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 35/158 (22%)

Query: 6   NTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRR 65
           N +D+ +  ++G DL+ F+ N EW    C  + + +N + Y CC + Y DIT+T+ ++RR
Sbjct: 175 NQVDIAMGMDSG-DLSDFVENVEWE---CHGMPAVRNVIMYGCCSDPYPDITYTLHLKRR 230

Query: 66  TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGL 125
           +L+Y FNL++PC LIS +A LGF LP DSGEK++L                         
Sbjct: 231 SLFYIFNLLLPCFLISFLAPLGFYLPADSGEKVSL------------------------- 265

Query: 126 PLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHH 163
                GVT+LL+LTVF  +VAESMP  S++VP IG ++
Sbjct: 266 -----GVTVLLALTVFQLMVAESMP-PSESVPYIGKYY 297

Oncorhynchus mykiss (taxid: 8022)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
195118907	537	GI18200 [Drosophila mojavensis] gi|19391	0.897	0.294	0.660	4e-51
195385018	536	GJ14694 [Drosophila virilis] gi|19414766	0.897	0.294	0.660	4e-51
195053093	536	GH13056 [Drosophila grimshawi] gi|193900	0.897	0.294	0.660	5e-51
195577927	595	GD22333 [Drosophila simulans] gi|1941908	0.897	0.265	0.660	8e-51
194859302	538	GG24004 [Drosophila erecta] gi|195473387	0.897	0.293	0.660	9e-51
195438553	536	GK24143 [Drosophila willistoni] gi|19416	0.897	0.294	0.660	9e-51
194765629	538	GF21872 [Drosophila ananassae] gi|190617	0.897	0.293	0.660	9e-51
45552305	523	nicotinic acetylcholine receptor alpha 3	0.897	0.302	0.660	9e-51
20152853	523	nicotinic acetylcholine receptor Dalpha6	0.897	0.302	0.660	9e-51
198473576	538	GA17977 [Drosophila pseudoobscura pseudo	0.897	0.293	0.660	1e-50

>gi|195118907|ref|XP_002003973.1| GI18200 [Drosophila mojavensis] gi|193914548|gb|EDW13415.1| GI18200 [Drosophila mojavensis]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 111/168 (66%), Positives = 125/168 (74%), Gaps = 10/168 (5%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
            N LDL+L  E GGDL+ FITNGEWYLL    +  KKN + Y+CCPE YVDITFTIQIRR
Sbjct: 193 GNQLDLVLNSEDGGDLSDFITNGEWYLLA---MPGKKNTIVYQCCPEPYVDITFTIQIRR 249

Query: 65  RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFN---NSVQCTRD 121
           RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTL     L  + F N    S+  T D
Sbjct: 250 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSD 309

Query: 122 FSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLI 169
              +PLI  GVTILLSLTVFLNLVAE++P  SDA+PL+GT+   I  +
Sbjct: 310 --AVPLI--GVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFM 353

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195385018|ref|XP_002051205.1| GJ14694 [Drosophila virilis] gi|194147662|gb|EDW63360.1| GJ14694 [Drosophila virilis]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 111/168 (66%), Positives = 125/168 (74%), Gaps = 10/168 (5%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
            N LDL+L  E GGDL+ FITNGEWYLL    +  KKN + Y+CCPE YVDITFTIQIRR
Sbjct: 192 GNQLDLVLNSEDGGDLSDFITNGEWYLLA---MPGKKNTIVYQCCPEPYVDITFTIQIRR 248

Query: 65  RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFN---NSVQCTRD 121
           RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTL     L  + F N    S+  T D
Sbjct: 249 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSD 308

Query: 122 FSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLI 169
              +PLI  GVTILLSLTVFLNLVAE++P  SDA+PL+GT+   I  +
Sbjct: 309 --AVPLI--GVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFM 352

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195053093|ref|XP_001993465.1| GH13056 [Drosophila grimshawi] gi|193900524|gb|EDV99390.1| GH13056 [Drosophila grimshawi]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 111/168 (66%), Positives = 125/168 (74%), Gaps = 10/168 (5%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
            N LDL+L  E GGDL+ FITNGEWYLL    +  KKN + Y+CCPE YVDITFTIQIRR
Sbjct: 192 GNQLDLVLNSEDGGDLSDFITNGEWYLLA---MPGKKNTIVYQCCPEPYVDITFTIQIRR 248

Query: 65  RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFN---NSVQCTRD 121
           RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTL     L  + F N    S+  T D
Sbjct: 249 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSD 308

Query: 122 FSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLI 169
              +PLI  GVTILLSLTVFLNLVAE++P  SDA+PL+GT+   I  +
Sbjct: 309 --AVPLI--GVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFM 352

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195577927|ref|XP_002078820.1| GD22333 [Drosophila simulans] gi|194190829|gb|EDX04405.1| GD22333 [Drosophila simulans]

 Score =  204 bits (520), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 111/168 (66%), Positives = 124/168 (73%), Gaps = 10/168 (5%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
            N LDL+L  E GGDL+ FITNGEWYLL    +  KKN + Y CCPE YVDITFTIQIRR
Sbjct: 251 GNQLDLVLNSEDGGDLSDFITNGEWYLLA---MPGKKNTIVYACCPEPYVDITFTIQIRR 307

Query: 65  RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFN---NSVQCTRD 121
           RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTL     L  + F N    S+  T D
Sbjct: 308 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSD 367

Query: 122 FSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLI 169
              +PLI  GVTILLSLTVFLNLVAE++P  SDA+PL+GT+   I  +
Sbjct: 368 --AVPLI--GVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFM 411

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194859302|ref|XP_001969351.1| GG24004 [Drosophila erecta] gi|195473387|ref|XP_002088977.1| GE10292 [Drosophila yakuba] gi|190661218|gb|EDV58410.1| GG24004 [Drosophila erecta] gi|194175078|gb|EDW88689.1| GE10292 [Drosophila yakuba]

 Score =  204 bits (520), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 111/168 (66%), Positives = 124/168 (73%), Gaps = 10/168 (5%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
            N LDL+L  E GGDL+ FITNGEWYLL    +  KKN + Y CCPE YVDITFTIQIRR
Sbjct: 194 GNQLDLVLNSEDGGDLSDFITNGEWYLLA---MPGKKNTIVYACCPEPYVDITFTIQIRR 250

Query: 65  RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFN---NSVQCTRD 121
           RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTL     L  + F N    S+  T D
Sbjct: 251 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSD 310

Query: 122 FSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLI 169
              +PLI  GVTILLSLTVFLNLVAE++P  SDA+PL+GT+   I  +
Sbjct: 311 --AVPLI--GVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFM 354

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195438553|ref|XP_002067201.1| GK24143 [Drosophila willistoni] gi|194163286|gb|EDW78187.1| GK24143 [Drosophila willistoni]

 Score =  204 bits (520), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 111/168 (66%), Positives = 124/168 (73%), Gaps = 10/168 (5%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
            N LDL+L  E GGDL+ FITNGEWYLL    +  KKN + Y CCPE YVDITFTIQIRR
Sbjct: 192 GNQLDLVLNSEDGGDLSDFITNGEWYLLA---MPGKKNTIVYACCPEPYVDITFTIQIRR 248

Query: 65  RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFN---NSVQCTRD 121
           RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTL     L  + F N    S+  T D
Sbjct: 249 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSD 308

Query: 122 FSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLI 169
              +PLI  GVTILLSLTVFLNLVAE++P  SDA+PL+GT+   I  +
Sbjct: 309 --AVPLI--GVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFM 352

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194765629|ref|XP_001964929.1| GF21872 [Drosophila ananassae] gi|190617539|gb|EDV33063.1| GF21872 [Drosophila ananassae]

 Score =  204 bits (520), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 111/168 (66%), Positives = 124/168 (73%), Gaps = 10/168 (5%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
            N LDL+L  E GGDL+ FITNGEWYLL    +  KKN + Y CCPE YVDITFTIQIRR
Sbjct: 194 GNQLDLVLNSEDGGDLSDFITNGEWYLLA---MPGKKNTIVYACCPEPYVDITFTIQIRR 250

Query: 65  RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFN---NSVQCTRD 121
           RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTL     L  + F N    S+  T D
Sbjct: 251 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSD 310

Query: 122 FSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLI 169
              +PLI  GVTILLSLTVFLNLVAE++P  SDA+PL+GT+   I  +
Sbjct: 311 --AVPLI--GVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFM 354

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45552305|ref|NP_995675.1| nicotinic acetylcholine receptor alpha 30D, isoform E [Drosophila melanogaster] gi|45445071|gb|AAS64671.1| nicotinic acetylcholine receptor alpha 30D, isoform E [Drosophila melanogaster]

 Score =  204 bits (520), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 111/168 (66%), Positives = 124/168 (73%), Gaps = 10/168 (5%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
            N LDL+L  E GGDL+ FITNGEWYLL    +  KKN + Y CCPE YVDITFTIQIRR
Sbjct: 179 GNQLDLVLNSEDGGDLSDFITNGEWYLLA---MPGKKNTIVYACCPEPYVDITFTIQIRR 235

Query: 65  RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFN---NSVQCTRD 121
           RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTL     L  + F N    S+  T D
Sbjct: 236 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSD 295

Query: 122 FSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLI 169
              +PLI  GVTILLSLTVFLNLVAE++P  SDA+PL+GT+   I  +
Sbjct: 296 --AVPLI--GVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFM 339

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|20152853|gb|AAM13396.1|AF321449_1 nicotinic acetylcholine receptor Dalpha6 subunit variant type V [Drosophila melanogaster]

 Score =  204 bits (520), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 111/168 (66%), Positives = 124/168 (73%), Gaps = 10/168 (5%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
            N LDL+L  E GGDL+ FITNGEWYLL    +  KKN + Y CCPE YVDITFTIQIRR
Sbjct: 179 GNQLDLVLNSEDGGDLSDFITNGEWYLLA---MPGKKNTIVYACCPEPYVDITFTIQIRR 235

Query: 65  RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFN---NSVQCTRD 121
           RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTL     L  + F N    S+  T D
Sbjct: 236 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSD 295

Query: 122 FSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLI 169
              +PLI  GVTILLSLTVFLNLVAE++P  SDA+PL+GT+   I  +
Sbjct: 296 --AVPLI--GVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFM 339

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198473576|ref|XP_001356348.2| GA17977 [Drosophila pseudoobscura pseudoobscura] gi|198138018|gb|EAL33411.2| GA17977 [Drosophila pseudoobscura pseudoobscura]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 111/168 (66%), Positives = 124/168 (73%), Gaps = 10/168 (5%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
            N LDL+L  E GGDL+ FITNGEWYLL    +  KKN + Y CCPE YVDITFTIQIRR
Sbjct: 194 GNQLDLVLNSEDGGDLSDFITNGEWYLLA---MPGKKNTIVYACCPEPYVDITFTIQIRR 250

Query: 65  RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFN---NSVQCTRD 121
           RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTL     L  + F N    S+  T D
Sbjct: 251 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSD 310

Query: 122 FSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLI 169
              +PLI  GVTILLSLTVFLNLVAE++P  SDA+PL+GT+   I  +
Sbjct: 311 --AVPLI--GVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFM 354

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
FB|FBgn0032151	523	nAcRalpha-30D "nicotinic Acety	0.852	0.286	0.687	4.6e-50
FB|FBgn0086778	564	gfA "giant fibre A" [Drosophil	0.812	0.253	0.531	5.7e-35
FB|FBgn0028875	808	nAcRalpha-34E "nicotinic Acety	0.812	0.176	0.506	6.9e-33
WB|WBGene00000055	498	acr-16 [Caenorhabditis elegans	0.5	0.176	0.543	5.9e-29
WB|WBGene00000060	469	acr-21 [Caenorhabditis elegans	0.738	0.277	0.471	3.3e-24
UNIPROTKB|F1SNR6	390	CHRNA7 "Uncharacterized protei	0.761	0.343	0.427	8.7e-24
FB|FBgn0000036	567	nAcRalpha-96Aa "nicotinic Acet	0.539	0.167	0.428	9.8e-23
UNIPROTKB|F1MDD1	479	CHRNA9 "Uncharacterized protei	0.454	0.167	0.469	2.3e-22
UNIPROTKB|E2QUF7	479	CHRNA9 "Uncharacterized protei	0.454	0.167	0.469	2.3e-22
UNIPROTKB|Q9UGM1	479	CHRNA9 "Neuronal acetylcholine	0.454	0.167	0.469	2.3e-22

FB|FBgn0032151 nAcRalpha-30D "nicotinic Acetylcholine Receptor alpha 30D" [Drosophila melanogaster (taxid:7227)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 110/160 (68%), Positives = 122/160 (76%)

Query:     6 NTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRR 65
             N LDL+L  E GGDL+ FITNGEWYLL    +  KKN + Y CCPE YVDITFTIQIRRR
Sbjct:   180 NQLDLVLNSEDGGDLSDFITNGEWYLLA---MPGKKNTIVYACCPEPYVDITFTIQIRRR 236

Query:    66 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFN---NSVQCTRDF 122
             TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTL     L  + F N    S+  T D 
Sbjct:   237 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSD- 295

Query:   123 SGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTH 162
               +PLI  GVTILLSLTVFLNLVAE++P  SDA+PL+GT+
Sbjct:   296 -AVPLI--GVTILLSLTVFLNLVAETLPQVSDAIPLLGTY 332

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS;IDA;NAS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS;IDA;NAS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0017085 "response to insecticide" evidence=IMP;NAS

GO:0016021 "integral to membrane" evidence=IDA

GO:0046716 "muscle cell homeostasis" evidence=IMP

FB|FBgn0086778 gfA "giant fibre A" [Drosophila melanogaster (taxid:7227)]

 Score = 380 (138.8 bits), Expect = 5.7e-35, P = 5.7e-35
 Identities = 85/160 (53%), Positives = 109/160 (68%)

Query:     8 LDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTL 67
             LDL L+DEAGGD+++FITNGEW LL    +  K+NE+ Y CCPE Y+DITF I IRR+TL
Sbjct:   213 LDLQLQDEAGGDISSFITNGEWDLL---GVPGKRNEIYYNCCPEPYIDITFAILIRRKTL 269

Query:    68 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFN---NSVQCTRDFSG 124
             YYFFNLIVPCVLI+SMALLGFTLPPDSGEKL+L     L  + F N    ++  T D   
Sbjct:   270 YYFFNLIVPCVLIASMALLGFTLPPDSGEKLSLGVTILLSLTVFLNMVAETMPATSD--A 327

Query:   125 LPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHR 164
             +PL+  G     +  +F+  VA S+ +T   + ++  HHR
Sbjct:   328 VPLL--GT--YFNCIMFM--VASSVVST---ILILNYHHR 358

GO:0007630 "jump response" evidence=IMP

GO:0007268 "synaptic transmission" evidence=IMP

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS;NAS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS;NAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0060079 "regulation of excitatory postsynaptic membrane potential" evidence=IMP

GO:0007632 "visual behavior" evidence=IMP

GO:0030425 "dendrite" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

FB|FBgn0028875 nAcRalpha-34E "nicotinic Acetylcholine Receptor alpha 34E" [Drosophila melanogaster (taxid:7227)]

 Score = 368 (134.6 bits), Expect = 6.9e-33, P = 6.9e-33
 Identities = 81/160 (50%), Positives = 107/160 (66%)

Query:     8 LDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTL 67
             LDL L+DE GGD+++++ NGEW LL    +  K+NE+ Y CCPE Y+DITF I IRRRTL
Sbjct:   465 LDLQLQDETGGDISSYVLNGEWELL---GVPGKRNEIYYNCCPEPYIDITFAIIIRRRTL 521

Query:    68 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFN---NSVQCTRDFSG 124
             YYFFNLI+PCVLI+SMALLGFTLPPDSGEKL+L     L  + F N    ++  T D   
Sbjct:   522 YYFFNLIIPCVLIASMALLGFTLPPDSGEKLSLGVTILLSLTVFLNMVAETMPATSD--A 579

Query:   125 LPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHR 164
             +PL+  G     +  +F+  VA S+ +T   + ++  HHR
Sbjct:   580 VPLL--GT--YFNCIMFM--VASSVVST---ILILNYHHR 610

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS;IDA;NAS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS;IDA;NAS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0042166 "acetylcholine binding" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

WB|WBGene00000055 acr-16 [Caenorhabditis elegans (taxid:6239)]

 Score = 261 (96.9 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
 Identities = 50/92 (54%), Positives = 68/92 (73%)

Query:    10 LILKDEAGG-DLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLY 68
             L L+   GG D++ +I+NGEW L +    + ++NE  Y+CCPE Y D+ F + +RRRTLY
Sbjct:   175 LDLQPATGGFDISEYISNGEWALPLT---TVERNEKFYDCCPEPYPDVHFYLHMRRRTLY 231

Query:    69 YFFNLIVPCVLISSMALLGFTLPPDSGEKLTL 100
             Y FNLI+PC+L + M LLGFTLPPD+GEK+TL
Sbjct:   232 YGFNLIMPCILTTLMTLLGFTLPPDAGEKITL 263

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0042995 "cell projection" evidence=IDA

WB|WBGene00000060 acr-21 [Caenorhabditis elegans (taxid:6239)]

 Score = 281 (104.0 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 67/142 (47%), Positives = 87/142 (61%)

Query:     8 LDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTL 67
             +DL+LK E G DLT +ITN EW L+    I ++KN+V Y CCPE Y  I   + I RR +
Sbjct:   153 IDLLLKSEQG-DLTNYITNTEWSLI---GIRAEKNQVIYSCCPEPYPFIDVHVTIERRAM 208

Query:    68 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQ-CTRDFSGLP 126
             +Y FNLI+PCVLIS +AL+GF +P DSGEK+TL     L T+ F     +        LP
Sbjct:   209 FYVFNLILPCVLISLIALMGFYMPTDSGEKVTLGITSLLSTTVFLMMVAEGMPPTAEALP 268

Query:   127 LI--LSGVTILL-----SLTVF 141
             LI    GVTI+L     ++TVF
Sbjct:   269 LIGIYFGVTIMLVALGTAMTVF 290

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|F1SNR6 CHRNA7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 62/145 (42%), Positives = 90/145 (62%)

Query:     7 TLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRT 66
             +LDL +++    D++ +I NGEW L+  + I  K+NE  YECC E Y D+TFT+ IRRRT
Sbjct:    62 SLDLQMQE---ADISGYIPNGEWDLVGNEGIPGKRNEKFYECCKEPYPDVTFTVTIRRRT 118

Query:    67 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFF---NNSVQCTRDFS 123
             LYY  NL++PCVLIS++ALL F LP DSGEK++L     L  + F       +  T D  
Sbjct:   119 LYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSD-- 176

Query:   124 GLPLI---LSGVTILLSLTVFLNLV 145
              +PLI    +   I++ L+V + ++
Sbjct:   177 SVPLIAQYFASTMIIVGLSVVVTVI 201

GO:0060112 "generation of ovulation cycle rhythm" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0048149 "behavioral response to ethanol" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0042113 "B cell activation" evidence=IEA

GO:0042110 "T cell activation" evidence=IEA

GO:0035095 "behavioral response to nicotine" evidence=IEA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA

GO:0032715 "negative regulation of interleukin-6 production" evidence=IEA

GO:0032691 "negative regulation of interleukin-1 beta production" evidence=IEA

GO:0032225 "regulation of synaptic transmission, dopaminergic" evidence=IEA

GO:0032094 "response to food" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0014061 "regulation of norepinephrine secretion" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0008306 "associative learning" evidence=IEA

GO:0007613 "memory" evidence=IEA

GO:0007271 "synaptic transmission, cholinergic" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0001988 "positive regulation of heart rate involved in baroreceptor response to decreased systemic arterial blood pressure" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

FB|FBgn0000036 nAcRalpha-96Aa "nicotinic Acetylcholine Receptor alpha 96Aa" [Drosophila melanogaster (taxid:7227)]

 Score = 211 (79.3 bits), Expect = 9.8e-23, Sum P(2) = 9.8e-23
 Identities = 42/98 (42%), Positives = 62/98 (63%)

Query:    15 EAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLI 74
             E G DL  +  + EW ++   ++ + +NE  Y CC E Y+DI F + +RR+TL+Y  NLI
Sbjct:   192 EVGIDLQDYYISVEWDIM---RVPAVRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLI 248

Query:    75 VPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFF 112
             +PCV IS +++L F LP DSGEK++L     L  + FF
Sbjct:   249 IPCVGISFLSVLVFYLPSDSGEKISLCISILLSLTVFF 286

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA;ISS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|F1MDD1 CHRNA9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 201 (75.8 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
 Identities = 39/83 (46%), Positives = 56/83 (67%)

Query:    18 GDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPC 77
             GDL+ FI + EW +     + + KN + Y CC E Y D+TFT+ ++RR+ +Y  NL++PC
Sbjct:   192 GDLSDFIEDVEWEV---HGMPAVKNVISYGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPC 248

Query:    78 VLISSMALLGFTLPPDSGEKLTL 100
             VLIS +A L F LP  SGEK++L
Sbjct:   249 VLISFLAPLSFYLPAASGEKVSL 271

GO:0050910 "detection of mechanical stimulus involved in sensory perception of sound" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|E2QUF7 CHRNA9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 201 (75.8 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
 Identities = 39/83 (46%), Positives = 56/83 (67%)

Query:    18 GDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPC 77
             GDL+ FI + EW +     + + KN + Y CC E Y D+TFT+ ++RR+ +Y  NL++PC
Sbjct:   192 GDLSDFIEDVEWEV---HGMPAVKNVISYGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPC 248

Query:    78 VLISSMALLGFTLPPDSGEKLTL 100
             VLIS +A L F LP  SGEK++L
Sbjct:   249 VLISFLAPLSFYLPAASGEKVSL 271

GO:0050910 "detection of mechanical stimulus involved in sensory perception of sound" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q9UGM1 CHRNA9 "Neuronal acetylcholine receptor subunit alpha-9" [Homo sapiens (taxid:9606)]

 Score = 201 (75.8 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
 Identities = 39/83 (46%), Positives = 56/83 (67%)

Query:    18 GDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPC 77
             GDL+ FI + EW +     + + KN + Y CC E Y D+TFT+ ++RR+ +Y  NL++PC
Sbjct:   192 GDLSDFIEDVEWEV---HGMPAVKNVISYGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPC 248

Query:    78 VLISSMALLGFTLPPDSGEKLTL 100
             VLIS +A L F LP  SGEK++L
Sbjct:   249 VLISFLAPLSFYLPAASGEKVSL 271

GO:0005262 "calcium channel activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005892 "acetylcholine-gated channel complex" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0050910 "detection of mechanical stimulus involved in sensory perception of sound" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IGI

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	176
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	8e-23
pfam02932	228	pfam02932, Neur_chan_memb, Neurotransmitter-gated	1e-15
pfam02931	215	pfam02931, Neur_chan_LBD, Neurotransmitter-gated i	4e-09

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score = 93.6 bits (233), Expect = 8e-23
 Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 36/170 (21%)

Query: 8   LDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTL 67
           L+   +     D + FI+  E+ LL    +   +     E     Y  +TF+  +RRR L
Sbjct: 186 LEWKEQGAVQVDDSLFISLPEFELL---GVYGTRYC-TSETNTGEYPCLTFSFVLRRRPL 241

Query: 68  YYFFNLIVPCVLISSMALLGFTLPPD-SGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           YY   L +P +LI  ++ + F LP D SG +++L                          
Sbjct: 242 YYLLQLYIPSILIVILSWVSFWLPADASGARVSL-------------------------- 275

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLLV 176
               G+T LL++T F + V ES+P  S  V  I  +  +    ++  LL 
Sbjct: 276 ----GITTLLTMTTFSSGVRESLPAVS-YVKAIDVYFAVCMAFVFLALLE 320

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region

 Score = 71.5 bits (176), Expect = 1e-15
 Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 33/105 (31%)

Query: 73  LIVPCVLISSMALLGFTLPPDSG-EKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSG 131
           LI+PCVLIS ++ L F LP D+G EK+TL                              G
Sbjct: 1   LIIPCVLISFLSWLVFWLPADAGPEKVTL------------------------------G 30

Query: 132 VTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLLV 176
           +T LL++TVFL L+ ES+P TS  VPLIG +  L+F +  +   V
Sbjct: 31  ITTLLTMTVFLLLIRESLPKTSYVVPLIGKY--LVFTMFVFTASV 73

This family includes the four transmembrane helices that form the ion channel. Length = 228

>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain

 Score = 53.4 bits (129), Expect = 4e-09
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 9/67 (13%)

Query: 6   NTLDLILKDEAGG------DLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFT 59
             +DL  KD+         DL+ F  NGEW ++    + +K+NE  Y C  E Y D+TF 
Sbjct: 152 EEVDLRWKDDTPPILDEEIDLSDFTENGEWDIV---DVPAKRNEYPYGCYSELYPDVTFY 208

Query: 60  IQIRRRT 66
             +RR+ 
Sbjct: 209 FVLRRKP 215

This family is the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
KOG3646|consensus	486		100.0
KOG3645|consensus	449		99.96
TIGR00860	459	LIC Cation transporter family protein. selective w	99.95
KOG3644|consensus	457		99.7
KOG3643|consensus	459		99.69
PF02932	237	Neur_chan_memb: Neurotransmitter-gated ion-channel	99.68
KOG3642|consensus	466		99.35
PF02931	217	Neur_chan_LBD: Neurotransmitter-gated ion-channel	98.15

>KOG3646|consensus

Probab=100.00  E-value=2.8e-35  Score=266.85  Aligned_cols=141  Identities=54%  Similarity=0.920  Sum_probs=134.6

Q ss_pred             CccCceEEEEEcCCC-CcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEEEEehhhHHH
Q psy8686           2 LSLSNTLDLILKDEA-GGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLI   80 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~-~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~livP~~li   80 (176)
                      .|+|.++||++.+.+ ++|+++|.+||||+++   +..++|++..|+||+|+|++++|.+.+|||..||.+|+|+||+++
T Consensus       173 TY~G~~lDL~~~~~~g~~Dls~yi~NGEW~Ll---~~pakr~~~~y~cC~epY~dv~F~l~irRRTLyYgfNlIiP~lLI  249 (486)
T KOG3646|consen  173 TYAGILLDLRIDDEDGGIDLSTYIPNGEWDLL---GTPAKREEKTYDCCPEPYPDVTFYLHIRRRTLYYGFNLIIPSLLI  249 (486)
T ss_pred             EEcceeeeeeeccccCCcchhhcccCCceeec---cccccceeeecccCCCCcceeEEEEEEEehhhHHHHHHHHHHHHH
Confidence            478999999976554 3699999999999999   999999999999999999999999999999999999999999999


Q ss_pred             HHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccchH
Q psy8686          81 SSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIG  160 (176)
Q Consensus        81 ~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg  160 (176)
                      ++|+++||.+|||+|||+++                              ++|++||.++|+.++|+.+|+||+++|+||
T Consensus       250 s~m~lLgFtlppD~gEKitL------------------------------~iTilLsvc~FL~mvse~~PpTSeaVPllg  299 (486)
T KOG3646|consen  250 SLMSLLGFTLPPDAGEKITL------------------------------QITILLSVCFFLTMVSEMTPPTSEAVPLLG  299 (486)
T ss_pred             HHHHHhccccCccccceeee------------------------------eeehHHHHHHHHHHHHhhcCCccccccHHH
Confidence            99999999999999999999                              999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy8686         161 THHRLIFLIIYYLLL  175 (176)
Q Consensus       161 ~~~~~~~~~v~~~ll  175 (176)
                      .||..+|++++.|..
T Consensus       300 ~fFsc~m~iv~~Svv  314 (486)
T KOG3646|consen  300 AFFSCCMFIVAASVV  314 (486)
T ss_pred             HHHHHHHHHHHhhhe
Confidence            999999999998864

>KOG3645|consensus

Probab=99.96  E-value=5.5e-29  Score=226.21  Aligned_cols=142  Identities=49%  Similarity=0.865  Sum_probs=130.2

Q ss_pred             CccCceEE-EEEcCCCC-cCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEEEEehhhHH
Q psy8686           2 LSLSNTLD-LILKDEAG-GDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVL   79 (176)
Q Consensus         2 ~~~~~~Vd-l~~~~~~~-idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~livP~~l   79 (176)
                      .|++++++ +....... .++++|.+|+||++.   +.+.++++..|.||++.|++++|.+.+||||.||.+++++||++
T Consensus       176 ~~~~~~i~~~~~~~~~~~~~~~~~~~n~eW~l~---~~~~~~~~~~~~~~~~~~~~i~f~l~irRkplyY~v~liiP~~l  252 (449)
T KOG3645|consen  176 TYDGSEVDGLDLNAQTIEVDLSDFIENSEWELL---SVTVVREEKKYDCCPGPYSDITFTITIRRKPLYYTVNLIIPCFL  252 (449)
T ss_pred             ccCccccceeeeccccccCCHHHcCCCCcEEEE---eeeeEEeecccCCCCCceeEEEEEEEEEeccceEEEehhhhHHH
Confidence            46788777 65543321 789999999999999   99999988889999999999999999999999999999999999


Q ss_pred             HHHHhhheeecCCCCC-ceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccc
Q psy8686          80 ISSMALLGFTLPPDSG-EKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPL  158 (176)
Q Consensus        80 i~~l~l~~f~lp~~sg-er~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPl  158 (176)
                      +++++++|||+|+++| ||+++                              |+|+||++++|+.++++.+|+||..+|+
T Consensus       253 is~l~il~fflp~~~~~eki~L------------------------------~it~Ll~~tv~ll~vs~~~P~ts~~iPL  302 (449)
T KOG3645|consen  253 ISFLSILGFFLPSDSGTEKVTL------------------------------GITVLLAMTVFLLLVSDKMPPTSSVIPL  302 (449)
T ss_pred             HHHHHhheEEccCCCCCceEEE------------------------------EHHHHHHHHHHHHHHHhhcCCccCcchH
Confidence            9999999999998886 99999                              9999999999999999999999988999


Q ss_pred             hHHHHHHHHHHHHHHHhC
Q psy8686         159 IGTHHRLIFLIIYYLLLV  176 (176)
Q Consensus       159 Ig~~~~~~~~~v~~~ll~  176 (176)
                      ||+|+..+|+++++++++
T Consensus       303 ig~y~~~~m~~~~~sv~~  320 (449)
T KOG3645|consen  303 IGKYLLFTMVLVTISVVV  320 (449)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999998763

>TIGR00860 LIC Cation transporter family protein

Probab=99.95  E-value=8.9e-28  Score=218.71  Aligned_cols=139  Identities=32%  Similarity=0.518  Sum_probs=127.1

Q ss_pred             CccCceEEEEEcCCC--CcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEEEEehhhHH
Q psy8686           2 LSLSNTLDLILKDEA--GGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVL   79 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~--~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~livP~~l   79 (176)
                      .|+++++++...+++  ..+.+.|.+++||++.   +...+++. .|.||++.|++++|++.+||+++||.+++++||++
T Consensus       178 ~y~~~~i~l~~~~~~~v~~~~~~~~~~~eW~l~---~~~~~~~~-~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~l  253 (459)
T TIGR00860       178 GYTTNDIKLEWKEQGAVQVDDSLFISLPEFELL---GVYGTRYC-TSETNTGEYPCLTFSFVLRRRPLYYLLQLYIPSIL  253 (459)
T ss_pred             ccccceEEEEECCCCceEechhhccccCceEEE---eeeeeeeE-ecccCCCCcCeEEEEEEEEEcccceeeeehHHHHH
Confidence            478999999875432  3566779999999999   76666665 68999999999999999999999999999999999


Q ss_pred             HHHHhhheeecCCC-CCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccc
Q psy8686          80 ISSMALLGFTLPPD-SGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPL  158 (176)
Q Consensus        80 i~~l~l~~f~lp~~-sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPl  158 (176)
                      ++++++++||+|++ +|||+++                              |+|+||++++|+..+++.+|++| ++|+
T Consensus       254 i~~ls~~sF~Lp~~a~~eRi~L------------------------------~it~lLs~~vf~~~v~~~lP~~S-~vpl  302 (459)
T TIGR00860       254 IVILSWVSFWLPADASGARVSL------------------------------GITTLLTMTTFSSGVRESLPAVS-YVKA  302 (459)
T ss_pred             HHHHhheeEecCCCCCCCcEEE------------------------------EEEHHHHHHHHHHHHHhhCCCcc-hHHH
Confidence            99999999999999 7999999                              99999999999999999999999 8999


Q ss_pred             hHHHHHHHHHHHHHHHh
Q psy8686         159 IGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       159 Ig~~~~~~~~~v~~~ll  175 (176)
                      ||.|+..+|++++++++
T Consensus       303 i~~y~~~~~~~v~~sli  319 (459)
T TIGR00860       303 IDVYFAVCMAFVFLALL  319 (459)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999886

selective while glycine receptors are anion selective).

>KOG3644|consensus

Probab=99.70  E-value=5.6e-17  Score=148.85  Aligned_cols=138  Identities=25%  Similarity=0.344  Sum_probs=114.8

Q ss_pred             CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEEEEehhhHHHH
Q psy8686           2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLIS   81 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~livP~~li~   81 (176)
                      .|+.++|.+.+.+++.+..+.=..-+|-.+.   +++..+....|.  .+.|++++.+++++|+.+||..+.++|+.+++
T Consensus       192 ~Yn~~~v~~~W~~~~pv~~~~~i~LPdf~l~---~~~~~~~~~~y~--~G~~scL~v~~~f~R~~g~yllQ~YiPT~l~V  266 (457)
T KOG3644|consen  192 AYNTDDVRLEWKEWNPVQVKKDIKLPDFSLP---SFSTEKCTGSYT--TGVYSCLRVTFTFKRRYGYYLLQTYIPTLLIV  266 (457)
T ss_pred             ccccceEEEEecCCCCcccccCccCCceecc---ceeecccccccc--CcceEEEEEEEEEEEeehhhhhHHHhhhHhhh
Confidence            4778889998876543332222223444555   554444444555  67899999999999999999999999999999


Q ss_pred             HHhhheeecCCCC-CceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccchH
Q psy8686          82 SMALLGFTLPPDS-GEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIG  160 (176)
Q Consensus        82 ~l~l~~f~lp~~s-ger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg  160 (176)
                      +++|++|||++++ ..|+++                              |+|.||+++.-.+-+..++|+.| ++..|+
T Consensus       267 iiSWvSFWLd~~A~PARv~L------------------------------gvtsLLtLttq~~~i~~~LP~VS-YvKAID  315 (457)
T KOG3644|consen  267 IISWVSFWLDPKAVPARVTL------------------------------GVTSLLTLTTQSGGIRRNLPKVS-YVKAID  315 (457)
T ss_pred             hhhhhheecCCCcccceEEe------------------------------hHHHHHHHHHHhcchhhcCCchh-hHHHHH
Confidence            9999999999998 789999                              99999999999999999999999 699999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy8686         161 THHRLIFLIIYYLLL  175 (176)
Q Consensus       161 ~~~~~~~~~v~~~ll  175 (176)
                      .|+.+|+++|+.+|+
T Consensus       316 VWm~~C~~FIF~sLl  330 (457)
T KOG3644|consen  316 VWMGVCMTFIFGSLL  330 (457)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999986

>KOG3643|consensus

Probab=99.69  E-value=2.7e-16  Score=142.93  Aligned_cols=137  Identities=19%  Similarity=0.371  Sum_probs=109.9

Q ss_pred             ccCceEEEEEcCCC-CcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEEEEehhhHHHH
Q psy8686           3 SLSNTLDLILKDEA-GGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLIS   81 (176)
Q Consensus         3 ~~~~~Vdl~~~~~~-~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~livP~~li~   81 (176)
                      |++++|.+.+.+.+ .+...+=.+=.+..+.   +.........+.  .+.|+.+...|++||+.+||.++.++|+++++
T Consensus       183 Yt~~DI~y~W~~g~~av~~~e~i~LpqFti~---~~~~~s~~~~~s--TG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiV  257 (459)
T KOG3643|consen  183 YTTDDIEYYWSKGDNAVKGDEKIELPQFTIT---EYHVTSRLVSFS--TGNYSRLSLSFQLRRNIGFYILQTYIPSTLIV  257 (459)
T ss_pred             cccccEEEEEcCCCccccceeeeeccceEEE---EEEEEEEEEEEc--cccceeEEEEEEEEeeccEEEEeeecchhhhh
Confidence            56777777765321 1111111112333344   333333334444  68999999999999999999999999999999


Q ss_pred             HHhhheeecCCCC-CceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccchH
Q psy8686          82 SMALLGFTLPPDS-GEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIG  160 (176)
Q Consensus        82 ~l~l~~f~lp~~s-ger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg  160 (176)
                      +++|++||+.-|+ ..|+++                              |||+.|++|.......++||+.| ++..|+
T Consensus       258 ilSWVSFWin~~a~pARv~l------------------------------GITTVLTMTTl~t~~n~slPrvS-YVKAiD  306 (459)
T KOG3643|consen  258 ILSWVSFWINRDASPARVAL------------------------------GITTVLTMTTLMTSTNESLPRVS-YVKAID  306 (459)
T ss_pred             HHhHhHhhhccccchhheee------------------------------ceehHHhHHHHHhhhhccCCCcc-ceeeeh
Confidence            9999999999997 799999                              99999999999999999999999 799999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy8686         161 THHRLIFLIIYYLLL  175 (176)
Q Consensus       161 ~~~~~~~~~v~~~ll  175 (176)
                      .|+..|+++|++|||
T Consensus       307 iYL~vCFvfVF~sLL  321 (459)
T KOG3643|consen  307 VYLGVCFVFVFLSLL  321 (459)
T ss_pred             hhhhHHHHHHHHHHH
Confidence            999999999999986

>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=99.68  E-value=8.9e-19  Score=133.81  Aligned_cols=72  Identities=49%  Similarity=0.782  Sum_probs=67.8

Q ss_pred             EehhhHHHHHHhhheeecCCCCC-ceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCC
Q psy8686          73 LIVPCVLISSMALLGFTLPPDSG-EKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPT  151 (176)
Q Consensus        73 livP~~li~~l~l~~f~lp~~sg-er~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~  151 (176)
                      +++||++++++++++||+|+++| ||+++                              |||+|||+++++..+++.||+
T Consensus         1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l------------------------------~it~lL~~~~~~~~~~~~lP~   50 (237)
T PF02932_consen    1 LIIPCILIVVLSWLSFWLPPESGPERVTL------------------------------GITTLLAMTVFLLMVAENLPP   50 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeehHHHHHHHHHhheEeCcccccccccc------------------------------chhHHHHHHHHHhhhhhhhcc
Confidence            37999999999999999999998 99999                              999999999999999999999


Q ss_pred             CCCCccchHHHHHHHHHHHHHHH
Q psy8686         152 TSDAVPLIGTHHRLIFLIIYYLL  174 (176)
Q Consensus       152 tS~~iPlIg~~~~~~~~~v~~~l  174 (176)
                      +|+.+|++|+|+...++++..++
T Consensus        51 ~s~~~pl~~~~~~~~~~v~~~~~   73 (237)
T PF02932_consen   51 TSYAKPLDGWYFICTMFVFSASL   73 (237)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhccccchhhhHHH
Confidence            99999999999988888877665

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....

>KOG3642|consensus

Probab=99.35  E-value=7.1e-13  Score=121.19  Aligned_cols=96  Identities=20%  Similarity=0.472  Sum_probs=91.4

Q ss_pred             CCCceeeEEEEEEEEeccceeEEEEehhhHHHHHHhhheeecCCCC-CceEEEeeecceeeceeecccccccccCCCCcc
Q psy8686          49 CPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPL  127 (176)
Q Consensus        49 ~~~~y~~i~~~i~lrR~~~~y~~~livP~~li~~l~l~~f~lp~~s-ger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~  127 (176)
                      ..+.|.-++..|+++||.+|++++.++||++.+.|+|.+||+..|+ .+|..+                           
T Consensus       233 ~~gey~vmtv~F~L~R~~GYf~iQ~YlPC~ltViLSwVSFWinrEs~paRt~l---------------------------  285 (466)
T KOG3642|consen  233 SSGEYSVMTVYFHLSRRQGYFIIQIYLPCILTVVLSWVSFWINREATPARTSL---------------------------  285 (466)
T ss_pred             cCCCEEEEEEEEeccceeeEEEEeeccceeeeeeeeeeehhccccccccceee---------------------------
Confidence            3568999999999999999999999999999999999999999998 899999                           


Q ss_pred             ccccchhhhHHHHHHHHhhhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686         128 ILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       128 ~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll  175 (176)
                         |||..|+++..-.....++||.| +.+.+++|...|+++++.+++
T Consensus       286 ---GITtVLTMTtLs~~aR~slPKVs-y~TAmD~fIavCf~FvFsali  329 (466)
T KOG3642|consen  286 ---GITTVLTMTTLSTSARKSLPKVS-YATALDVFIAVCFIFVFAALV  329 (466)
T ss_pred             ---eeeeeeeeeeeeehhccCCCccc-cchhHHHHHHHHHHHHHHHHH
Confidence               99999999999999999999998 699999999999999998875

>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=98.15  E-value=1.3e-05  Score=64.79  Aligned_cols=62  Identities=27%  Similarity=0.594  Sum_probs=53.0

Q ss_pred             CccCceEEEEEcCC-------CCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCc-eeeEEEEEEEEecc
Q psy8686           2 LSLSNTLDLILKDE-------AGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPET-YVDITFTIQIRRRT   66 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~-------~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~-y~~i~~~i~lrR~~   66 (176)
                      .|+++++.+.....       ...+++.|..++||++.   +....+++..++||++. |+.+.+++++||||
T Consensus       148 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~ew~~~---~~~~~~~~~~~~~~~~~~ys~l~~~~~l~R~~  217 (217)
T PF02931_consen  148 SYNSEEVQLKWENKNPPIDENDEVSLSDFVSNSEWKIV---SVTSTRRETTYGCYNEPTYSMLSFTFTLKRRP  217 (217)
T ss_dssp             SSSTTTEEEEESCSSS-TTSSTTTSCTTCETTSSEEEE---EEEEEEEEEEESTSSSCSEEEEEEEEEEEEST
T ss_pred             cccccceeeeecccCceeeeeccccHHHccccceEEEE---eeEEEEEEEccCCcCCCCEeeEEEEEEEEECc
Confidence            46788999987653       24778889999999999   88888888889999886 99999999999997

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	176
2bg9_A	370	Refined Structure Of The Nicotinic Acetylcholine Re		2e-21
4aq5_A	461	Gating Movement In Acetylcholine Receptor Analysed		2e-21
2bg9_C	369	Refined Structure Of The Nicotinic Acetylcholine Re		1e-15
4aq5_C	522	Gating Movement In Acetylcholine Receptor Analysed		7e-15
2bg9_E	370	Refined Structure Of The Nicotinic Acetylcholine Re		4e-13
2bg9_B	370	Refined Structure Of The Nicotinic Acetylcholine Re		5e-13
4aq5_B	493	Gating Movement In Acetylcholine Receptor Analysed		5e-12
4aq5_E	488	Gating Movement In Acetylcholine Receptor Analysed		2e-11
1oed_A	227	Structure Of Acetylcholine Receptor Pore From Elect		4e-10
1oed_C	260	Structure Of Acetylcholine Receptor Pore From Elect		1e-08
1oed_B	250	Structure Of Acetylcholine Receptor Pore From Elect		3e-08
2ksr_A	164	Nmr Structures Of Tm Domain Of The N-Acetylcholine		3e-08
1oed_E	260	Structure Of Acetylcholine Receptor Pore From Elect		3e-07
2k58_B	35	Nmr Structures Of The First Transmembrane Domain Of		9e-07
2lm2_A	137	Nmr Structures Of The Transmembrane Domains Of The		2e-06
2lkg_A	140	Wsa Major Conformation Length = 140		6e-06
2lly_A	137	Nmr Structures Of The Transmembrane Domains Of The		2e-04

>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution. Length = 370

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/145 (40%), Positives = 82/145 (56%), Gaps = 34/145 (23%)
Query: 19  DLTTFITNGEWYLLVCKQISSKKNEVQYECCPET-YVDITFTIQIRRRTLYYFFNLIVPC 77
           DL+TF+ +GEW   V K     K+ V Y CCP+T Y+DIT+   ++R  LY+  N+I+PC
Sbjct: 166 DLSTFMESGEW---VMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPC 222
Query: 78  VLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLS 137
           +L S + +L F LP DSGEK+TL                               +++LLS
Sbjct: 223 LLFSFLTVLVFYLPTDSGEKMTL------------------------------SISVLLS 252
Query: 138 LTVFLNLVAESMPTTSDAVPLIGTH 162
           LTVFL ++ E +P+TS AVPLIG +
Sbjct: 253 LTVFLLVIVELIPSTSSAVPLIGKY 277

>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 461

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/145 (40%), Positives = 82/145 (56%), Gaps = 34/145 (23%)
Query: 19  DLTTFITNGEWYLLVCKQISSKKNEVQYECCPET-YVDITFTIQIRRRTLYYFFNLIVPC 77
           DL+TF+ +GEW   V K     K+ V Y CCP+T Y+DIT+   ++R  LY+  N+I+PC
Sbjct: 190 DLSTFMESGEW---VMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPC 246
Query: 78  VLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLS 137
           +L S + +L F LP DSGEK+TL                               +++LLS
Sbjct: 247 LLFSFLTVLVFYLPTDSGEKMTL------------------------------SISVLLS 276
Query: 138 LTVFLNLVAESMPTTSDAVPLIGTH 162
           LTVFL ++ E +P+TS AVPLIG +
Sbjct: 277 LTVFLLVIVELIPSTSSAVPLIGKY 301

>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 369

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 42/158 (26%)
Query: 7   TLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPE--TYVDITFTIQIRR 64
           ++DLI+  EA      F  NGEW ++      +KKN +  +  P    Y D+TF + IRR
Sbjct: 159 SMDLIIDPEA------FTENGEWEII---HKPAKKN-IYGDKFPNGTNYQDVTFYLIIRR 208
Query: 65  RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSG 124
           + L+Y  N I PCVLIS +A L F LP +SGEK++                         
Sbjct: 209 KPLFYVINFITPCVLISFLAALAFYLPAESGEKMS------------------------- 243
Query: 125 LPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTH 162
                + + +LL+  VFL L ++ +P T+ AVPLIG +
Sbjct: 244 -----TAICVLLAQAVFLLLTSQRLPETALAVPLIGKY 276

>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 522

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 36/146 (24%)
Query: 19  DLTTFITNGEWYLLVCKQISSKKNEVQYECCPE--TYVDITFTIQIRRRTLYYFFNLIVP 76
           D   F  NGEW ++      +KKN +  +  P    Y D+TF + IRR+ L+Y  N I P
Sbjct: 201 DPEAFTENGEWEII---HKPAKKN-IYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITP 256
Query: 77  CVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILL 136
           CVLIS +A L F LP +SGEK++                              + + +LL
Sbjct: 257 CVLISFLAALAFYLPAESGEKMS------------------------------TAICVLL 286
Query: 137 SLTVFLNLVAESMPTTSDAVPLIGTH 162
           +  VFL L ++ +P T+ AVPLIG +
Sbjct: 287 AQAVFLLLTSQRLPETALAVPLIGKY 312

>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 35/160 (21%)
Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPET--YVDITFTIQI 62
           ++ ++L L  E G D   F  NGEW +   +   +KKN   ++   +   + +I F + I
Sbjct: 152 AHEVNLQLSAEEGIDPEDFTENGEWTI---RHRPAKKN-YNWQLTKDDIDFQEIIFFLII 207
Query: 63  RRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDF 122
           +R+ L+Y  N+I PCVLISS+ +L + LP  +G +                   +CT   
Sbjct: 208 QRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQ-------------------KCTL-- 246
Query: 123 SGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTH 162
                    +++LL+ T+FL L+A+ +P TS  VPLIG +
Sbjct: 247 --------SISVLLAQTIFLFLIAQKVPETSLNVPLIGKY 278

>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 20/164 (12%)
Query: 4   LSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIR 63
           L + LD ++  +A      F  NG+W       I  K +   +     +Y D+TF + I+
Sbjct: 158 LQHALDAMINQDA------FTENGQW------SIEHKPSRKNWRSDDPSYEDVTFYLIIQ 205
Query: 64  RRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFS 123
           R+ L+Y    IVPC+LIS +A+L F LPPD+GEK++L     L  + F         + S
Sbjct: 206 RKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKVPETS 265
Query: 124 -GLPLILSG---VTILLSLTVFLNLVAESM----PTTSDAVPLI 159
             +P+I+S    + IL++ +V L++V  ++    P T +AV  I
Sbjct: 266 LSVPIIISYLMFIMILVAFSVILSVVVLNLHHRSPNTHEAVEAI 309

>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 493

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 22  TFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLIS 81
            F  NG+W       I  K +   +     +Y D+TF + I+R+ L+Y    IVPC+LIS
Sbjct: 203 AFTENGQW------SIEHKPSRKNWRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILIS 256
Query: 82  SMALLGFTLPPDSGEKLTL 100
            +A+L F LPPD+GEK++L
Sbjct: 257 ILAILVFYLPPDAGEKMSL 275

>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 488

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 35/146 (23%)
Query: 19  DLTTFITNGEWYLLVCKQISSKKNEVQYECCPET--YVDITFTIQIRRRTLYYFFNLIVP 76
           D   F  NGEW +   +   +KKN   ++   +   + +I F + I+R+ L+Y  N+I P
Sbjct: 173 DPEDFTENGEWTI---RHRPAKKN-YNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAP 228
Query: 77  CVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILL 136
           CVLISS+ +L + LP  +G +                   +CT            +++LL
Sbjct: 229 CVLISSLVVLVYFLPAQAGGQ-------------------KCTL----------SISVLL 259
Query: 137 SLTVFLNLVAESMPTTSDAVPLIGTH 162
           + T+FL L+A+ +P TS  VPLIG +
Sbjct: 260 AQTIFLFLIAQKVPETSLNVPLIGKY 285

>pdb|1OED|A Chain A, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 227

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 30/96 (31%)
Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           LY+  N+I+PC+L S +  L F LP DSGEK+TL                          
Sbjct: 2   LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTL-------------------------- 35
Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTH 162
                +++LLSLTVFL ++ E +P+TS AVPLIG +
Sbjct: 36  ----SISVLLSLTVFLLVIVELIPSTSSAVPLIGKY 67

>pdb|1OED|C Chain C, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 260

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 30/96 (31%)
Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           L+Y  N I PCVLIS +A L F LP +SGEK++                           
Sbjct: 2   LFYVINFITPCVLISFLASLAFYLPAESGEKMS--------------------------- 34
Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTH 162
              + +++LL+  VFL L ++ +P T+ AVPLIG +
Sbjct: 35  ---TAISVLLAQAVFLLLTSQRLPETALAVPLIGKY 67

>pdb|1OED|B Chain B, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 250

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 30/93 (32%)
Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           L+Y    I+PC+LIS +A+L F LPPD+GEK++L                          
Sbjct: 2   LFYIVYTIIPCILISILAILVFYLPPDAGEKMSL-------------------------- 35
Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLI 159
                ++ LL++TVFL L+A+ +P TS +VP+I
Sbjct: 36  ----SISALLAVTVFLLLLADKVPETSLSVPII 64

>pdb|2KSR|A Chain A, Nmr Structures Of Tm Domain Of The N-Acetylcholine Receptor B2 Subunit Length = 164

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 55  DITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTL 100
           ++ F    RR+ L+Y  NLI+PCVLI+S+A+L F LP D GEK+TL
Sbjct: 17  NLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTL 62

>pdb|1OED|E Chain E, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 260

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 29/96 (30%)
Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           L+Y  N+I PCVLISS+ +L + LP  +G +                   +CT       
Sbjct: 2   LFYIINIIAPCVLISSLVVLVYFLPAQAGGQ-------------------KCTL------ 36
Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTH 162
                +++LL+ T+FL L+A+ +P TS  VPLIG +
Sbjct: 37  ----SISVLLAQTIFLFLIAQKVPETSLNVPLIGKY 68

>pdb|2K58|B Chain B, Nmr Structures Of The First Transmembrane Domain Of The Neuronal Acetylcholine Receptor Beta 2 Subunit Length = 35

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 28/35 (80%)
Query: 63 RRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEK 97
          RR+ L+Y  NLI+PCVLI+S+A+L F LP D GEK
Sbjct: 1  RRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEK 35

>pdb|2LM2|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Achr B2 Subunit Length = 137

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 63  RRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTL 100
               L+Y  NLI+PCVLI+S+A+L F LP D GEK+TL
Sbjct: 4   EEEPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTL 41

>pdb|2LKG|A Chain A, Wsa Major Conformation Length = 140

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 30/96 (31%)
Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           LY+  N+I PC   S +  L F LP DSGEK+T                           
Sbjct: 50  LYFVVNVIEPCKKFSELTGLVFYLPTDSGEKMT--------------------------- 82
Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTH 162
                 ++L SLT  L  + E +P+TS AVPLIG +
Sbjct: 83  ---ESKSVLKSLTEKLKKIVELIPSTSSAVPLIGKY 115

>pdb|2LLY|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Nachr A4 Subunit Length = 137

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTL 100
           L+Y  NLI+PC+LIS + +L F LP + GEK+TL
Sbjct: 8   LFYTINLIIPCLLISCLTVLVFYLPSECGEKITL 41

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	1e-42
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	1e-41
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	2e-40
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	3e-40
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	4e-39
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	3e-37
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	1e-35
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	1e-35
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	1e-32
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	2e-31
2lkg_A	140	Acetylcholine receptor; transmembrane domain, SIGN	2e-26
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	4e-25
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	7e-23
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	2e-22
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	7e-22
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	8e-22
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	2e-21
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	3e-21
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	8e-21
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	8e-20
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	9e-19
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	9e-18
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	2e-16
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	1e-14
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	2e-12

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461

 Score =  146 bits (370), Expect = 1e-42
 Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 35/166 (21%)

Query: 6   NTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPE-TYVDITFTIQIRR 64
             + +  + +   DL+TF+ +GEW +         K+ V Y CCP+  Y+DIT+   ++R
Sbjct: 178 TKVSISPESD-RPDLSTFMESGEWVMKDY---RGWKHWVYYTCCPDTPYLDITYHFIMQR 233

Query: 65  RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSG 124
             LY+  N+I+PC+L S + +L F LP DSGEK+TL                        
Sbjct: 234 IPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTL------------------------ 269

Query: 125 LPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
                  +++LLSLTVFL ++ E +P+TS AVPLIG +     + +
Sbjct: 270 ------SISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFV 309

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score =  142 bits (359), Expect = 1e-41
 Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 36/165 (21%)

Query: 6   NTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRR 65
           + + L    +A  +   F  NG+W +       S+KN   +     +Y D+TF + I+R+
Sbjct: 154 SEVILQHALDAMINQDAFTENGQWSIE---HKPSRKN---WRSDDPSYEDVTFYLIIQRK 207

Query: 66  TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGL 125
            L+Y    IVPC+LIS +A+L F LPPD+GEK++L                         
Sbjct: 208 PLFYIVYTIVPCILISILAILVFYLPPDAGEKMSL------------------------- 242

Query: 126 PLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
                 ++ LL+LTVFL L+A+ +P TS +VP+I ++   I +++
Sbjct: 243 -----SISALLALTVFLLLLADKVPETSLSVPIIISYLMFIMILV 282

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score =  138 bits (350), Expect = 2e-40
 Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 35/167 (20%)

Query: 6   NTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPET-YVDITFTIQIRR 64
           + ++L L  E G D   F  NGEW +       +KKN        +  + +I F + I+R
Sbjct: 153 HEVNLQLSAEEGIDPEDFTENGEWTIR---HRPAKKNYNWQLTKDDIDFQEIIFFLIIQR 209

Query: 65  RTLYYFFNLIVPCVLISSMALLGFTLPPD-SGEKLTLVYKGFLRTSAFFNNSVQCTRDFS 123
           + L+Y  N+I PCVLISS+ +L + LP    G+K TL                       
Sbjct: 210 KPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTL----------------------- 246

Query: 124 GLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
                   +++LL+ T+FL L+A+ +P TS  VPLIG +   +  + 
Sbjct: 247 -------SISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVS 286

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score =  138 bits (350), Expect = 3e-40
 Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 35/166 (21%)

Query: 6   NTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPE-TYVDITFTIQIRR 64
             + +  + +   DL+TF+ +GEW +         K+ V Y CCP+  Y+DIT+   ++R
Sbjct: 154 TKVSISPESD-RPDLSTFMESGEWVMK---DYRGWKHWVYYTCCPDTPYLDITYHFIMQR 209

Query: 65  RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSG 124
             LY+  N+I+PC+L S + +L F LP DSGEK+TL                        
Sbjct: 210 IPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTL------------------------ 245

Query: 125 LPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
                  +++LLSLTVFL ++ E +P+TS AVPLIG +     + +
Sbjct: 246 ------SISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFV 285

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369

 Score =  135 bits (341), Expect = 4e-39
 Identities = 50/155 (32%), Positives = 72/155 (46%), Gaps = 34/155 (21%)

Query: 17  GGDLTTFITNGEWYLLVCKQISSKKNEVQYEC-CPETYVDITFTIQIRRRTLYYFFNLIV 75
             D   F  NGEW ++      +KKN    +      Y D+TF + IRR+ L+Y  N I 
Sbjct: 163 IIDPEAFTENGEWEII---HKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFIT 219

Query: 76  PCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTIL 135
           PCVLIS +A L F LP +SGEK++                                + +L
Sbjct: 220 PCVLISFLAALAFYLPAESGEKMST------------------------------AICVL 249

Query: 136 LSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
           L+  VFL L ++ +P T+ AVPLIG +   I  ++
Sbjct: 250 LAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLV 284

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522

 Score =  132 bits (334), Expect = 3e-37
 Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 34/171 (19%)

Query: 1   MLSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYEC-CPETYVDITFT 59
           +++ +        +    D   F  NGEW ++      +KKN    +      Y D+TF 
Sbjct: 183 LMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHK---PAKKNIYGDKFPNGTNYQDVTFY 239

Query: 60  IQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCT 119
           + IRR+ L+Y  N I PCVLIS +A L F LP +SGEK++                    
Sbjct: 240 LIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMST------------------- 280

Query: 120 RDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
                       + +LL+  VFL L ++ +P T+ AVPLIG +   I  ++
Sbjct: 281 -----------AICVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLV 320

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493

 Score =  128 bits (323), Expect = 1e-35
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 36/156 (23%)

Query: 15  EAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLI 74
           E   +   F  NG+W +        K +   +     +Y D+TF + I+R+ L+Y    I
Sbjct: 196 EIMINQDAFTENGQWSIE------HKPSRKNWRSDDPSYEDVTFYLIIQRKPLFYIVYTI 249

Query: 75  VPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTI 134
           VPC+LIS +A+L F LPPD+GEK++L                               ++ 
Sbjct: 250 VPCILISILAILVFYLPPDAGEKMSL------------------------------SISA 279

Query: 135 LLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
           LL+LTVFL L+A+ +P TS +VP+I ++   I +++
Sbjct: 280 LLALTVFLLLLADKVPETSLSVPIIISYLMFIMILV 315

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488

 Score =  128 bits (322), Expect = 1e-35
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 35/164 (21%)

Query: 9   DLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPET-YVDITFTIQIRRRTL 67
           +  + +    D   F  NGEW +       +KKN        +  + +I F + I+R+ L
Sbjct: 163 EGEVVEWIHIDPEDFTENGEWTIRHR---PAKKNYNWQLTKDDIDFQEIIFFLIIQRKPL 219

Query: 68  YYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           +Y  N+I PCVLISS+ +L + LP  + G+K TL                          
Sbjct: 220 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTL-------------------------- 253

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
                +++LL+ T+FL L+A+ +P TS  VPLIG +   +  + 
Sbjct: 254 ----SISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVS 293

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Length = 164

 Score =  113 bits (284), Expect = 1e-32
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 30/131 (22%)

Query: 40  KKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLT 99
             +            ++ F    RR+ L+Y  NLI+PCVLI+S+A+L F LP D GEK+T
Sbjct: 2   HHHHHHSTSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMT 61

Query: 100 LVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLI 159
           L                               +++LL+LTVFL L+++ +P TS  VPL+
Sbjct: 62  L------------------------------CISVLLALTVFLLLISKIVPPTSLDVPLV 91

Query: 160 GTHHRLIFLII 170
           G +     +++
Sbjct: 92  GKYLMFTMVLV 102

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score =  114 bits (288), Expect = 2e-31
 Identities = 22/156 (14%), Positives = 47/156 (30%), Gaps = 36/156 (23%)

Query: 6   NTLDLILK-DEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
           +T +++L  D         +    W +      ++      +         + + ++I R
Sbjct: 140 DTRNIVLAVDLEKVGKNDDVFLTGWDIE---SFTAVVKPANFALEDRLESKLDYQLRISR 196

Query: 65  RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSG 124
           +   Y  N+I+P + I  ++   F         +TL                        
Sbjct: 197 QYFSYIPNIILPMLFILFISWTAF-WSTSYEANVTL------------------------ 231

Query: 125 LPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIG 160
                  V+ L++   F  LV   +P T   +   G
Sbjct: 232 ------VVSTLIAHIAFNILVETCLPKTPY-MTYTG 260

>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Length = 140

 Score = 96.9 bits (241), Expect = 2e-26
 Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 37/132 (28%)

Query: 46  YECCP-ETYVDITFTIQIRRRT------LYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 98
             C      V+    I++ +        LY+  N+I PC   S +  L F LP DSGEK+
Sbjct: 22  KICKIGTESVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDSGEKM 81

Query: 99  TLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPL 158
           T                                 ++L SLT  L  + E +P+TS AVPL
Sbjct: 82  TE------------------------------SKSVLKSLTEKLKKIVELIPSTSSAVPL 111

Query: 159 IGTHHRLIFLII 170
           IG +       +
Sbjct: 112 IGKYMLFTKEFV 123

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Length = 137

 Score = 93.3 bits (232), Expect = 4e-25
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 30/109 (27%)

Query: 62  IRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRD 121
                L+Y  NLI+PC+LIS + +L F LP + GEK+TL                     
Sbjct: 3   AEELPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITL--------------------- 41

Query: 122 FSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
                     +++LLSLTVFL L+ E +P+TS   P IG +     + +
Sbjct: 42  ---------CISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIFV 81

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Length = 228

 Score = 89.9 bits (223), Expect = 7e-23
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
              +DL    +   DL+++  + ++ +L     +  +    Y CCPE Y+D+   ++ R 
Sbjct: 160 GFEIDLKTDTD-QVDLSSYYASSKYEIL---SATQTRQVQHYSCCPEPYIDVNLVVKFRE 215

Query: 65  RTLYYFF--NLI 74
           R     F  NL 
Sbjct: 216 RRAGNGFFRNLF 227

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* Length = 230

 Score = 88.4 bits (219), Expect = 2e-22
 Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
            + +D+   D+   ++          +L   + S+++ EV Y CC   YV++ + + +R 
Sbjct: 157 VDEVDIHFMDD-KAEVLLDFYQDSLEIL---ENSAQRQEVVYPCCESAYVEMKYLLALRS 212

Query: 65  RTLYYFFN--LIVPC 77
                 ++  L    
Sbjct: 213 ENGNSTYSRDLAHHH 227

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322

 Score = 88.9 bits (221), Expect = 7e-22
 Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 41/162 (25%)

Query: 6   NTLDLILK-DEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECC------PETYVDITF 58
           N   L     +   +        EW++    + S+  ++++Y+           +  IT 
Sbjct: 136 NNQQLRFSDIQVYTENIDNEEIDEWWIR--GKASTHISDIRYDHLSSVQPNQNEFSRITV 193

Query: 59  TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQC 118
            I   R   YY ++ I+P  LI + +   F L   S E+L                    
Sbjct: 194 RIDAVRNPSYYLWSFILPLGLIIAASWSVFWLESFS-ERLQT------------------ 234

Query: 119 TRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIG 160
                         T++L++  +    +  +P       +I 
Sbjct: 235 ------------SFTLMLTVVAYAFYTSNILPRLPY-TTVID 263

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Length = 260

 Score = 88.0 bits (217), Expect = 8e-22
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 30/104 (28%)

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           L+Y  N I PCVLIS +A L F LP +SGEK++                           
Sbjct: 2   LFYVINFITPCVLISFLASLAFYLPAESGEKMST-------------------------- 35

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
                +++LL+  VFL L ++ +P T+ AVPLIG +   I  ++
Sbjct: 36  ----AISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLV 75

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Length = 211

 Score = 85.7 bits (212), Expect = 2e-21
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
           S  + +    E   D   F     + +L    ++ KKN V Y CCPE Y D+  ++  R+
Sbjct: 148 SREISVDPTTENSDDSEYFSQYSRFEIL---DVTQKKNSVTYSCCPEAYEDVEVSLNFRK 204

Query: 65  RTLYY 69
           +    
Sbjct: 205 KGRSE 209

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Length = 250

 Score = 86.1 bits (212), Expect = 3e-21
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 30/104 (28%)

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           L+Y    I+PC+LIS +A+L F LPPD+GEK++L                          
Sbjct: 2   LFYIVYTIIPCILISILAILVFYLPPDAGEKMSL-------------------------- 35

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
                ++ LL++TVFL L+A+ +P TS +VP+I  +   I +++
Sbjct: 36  ----SISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILV 75

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Length = 227

 Score = 84.5 bits (208), Expect = 8e-21
 Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 30/104 (28%)

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           LY+  N+I+PC+L S +  L F LP DSGEK+TL                          
Sbjct: 2   LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTL-------------------------- 35

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
                +++LLSLTVFL ++ E +P+TS AVPLIG +     + +
Sbjct: 36  ----SISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFV 75

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Length = 203

 Score = 81.4 bits (201), Expect = 8e-20
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
           +    LI  +E   ++  +  + ++ LL     +   N  +Y CC   Y DI  T   R+
Sbjct: 146 NKQFALITGEEGVVNIAEYFDSPKFDLL---SATQSLNRKKYSCCENMYDDIEITFAFRK 202

Query: 65  R 65
           +
Sbjct: 203 K 203

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Length = 260

 Score = 79.6 bits (195), Expect = 9e-19
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 31/105 (29%)

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSG-EKLTLVYKGFLRTSAFFNNSVQCTRDFSGL 125
           L+Y  N+I PCVLISS+ +L + LP  +G +K TL                         
Sbjct: 2   LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTL------------------------- 36

Query: 126 PLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
                 +++LL+ T+FL L+A+ +P TS  VPLIG +   +  + 
Sbjct: 37  -----SISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVS 76

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score = 77.9 bits (192), Expect = 9e-18
 Identities = 26/172 (15%), Positives = 50/172 (29%), Gaps = 35/172 (20%)

Query: 6   NTLDLILK-DEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
            T D+     E          +        +  ++             Y  +  TIQ++R
Sbjct: 154 TTKDIEYLWKEHSPLQLKVGLSSSLPSF--QLTNTSTTYCTSVTNTGIYSCLRTTIQLKR 211

Query: 65  RTLYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVYKGFLRTSAFFNNSVQCTRDFS 123
              +Y   L +P  ++  ++ + F     +   ++TL                       
Sbjct: 212 EFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTL----------------------- 248

Query: 124 GLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLL 175
                  GVT LL++T     +   +P  S  +  I          I+  LL
Sbjct: 249 -------GVTTLLTMTAQSAGINSQLPPVSY-IKAIDVWIGACMTFIFCALL 292

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Length = 212

 Score = 72.5 bits (178), Expect = 2e-16
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCP-ETYVDITFTIQIR 63
            + + +  + +   DL+ F+ +GEW +    +    K+ V Y CCP   Y+DIT+   ++
Sbjct: 154 GSAVAINPESD-QPDLSNFMESGEWVIK---EARGWKHWVFYSCCPTTPYLDITYHFVMQ 209

Query: 64  RR 65
           R 
Sbjct: 210 RL 211

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A* Length = 204

 Score = 67.9 bits (166), Expect = 1e-14
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
           S  LDL +++    D++ +I    + L+     + K++E  YECC E Y D+TFT+  R+
Sbjct: 149 SRELDLQMQE---ADISGYIPYSRFELVGV---TQKRSERFYECCKEPYPDVTFTVTFRK 202

Query: 65  R 65
           +
Sbjct: 203 K 203

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 6/67 (8%), Positives = 22/67 (32%), Gaps = 4/67 (5%)

Query: 6   NTLDLILK-DEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
           +T +++L  D         +    W +      ++      +         + + ++I R
Sbjct: 136 DTRNIVLAVDLEKVGKNDDVFLTGWDIE---SFTAVVKPANFALEDRLESKLDYQLRISR 192

Query: 65  RTLYYFF 71
           +  ++  
Sbjct: 193 QGGHHHH 199

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	99.96
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	99.95
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	99.95
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	99.95
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	99.95
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	99.95
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	99.94
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	99.94
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	99.94
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	99.94
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	99.94
2lkg_A	140	Acetylcholine receptor; transmembrane domain, SIGN	99.93
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	99.93
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	99.87
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	99.76
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	99.75
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	99.74
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	99.73
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	99.29
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	99.19
4aoe_A	205	Acetylcholine-binding protein type 2; ligand gated	99.18
4aod_A	205	Acetylcholine-binding protein type 1; ligand gated	99.15
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	99.15
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	99.09
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	98.95
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	98.95
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	98.95
1vry_A	76	Glycine receptor alpha-1 chain; second transmembra	97.71

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=99.96  E-value=1.7e-30  Score=235.33  Aligned_cols=140  Identities=39%  Similarity=0.742  Sum_probs=132.9

Q ss_pred             CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCC-ceeeEEEEEEEEeccceeEEEEehhhHHH
Q psy8686           2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPE-TYVDITFTIQIRRRTLYYFFNLIVPCVLI   80 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~-~y~~i~~~i~lrR~~~~y~~~livP~~li   80 (176)
                      .|+++++++...+ +++++++|.+||||++.   +...+++...|+||++ +|+++++++.+|||++||.+++++||+++
T Consensus       174 ~y~~~~v~l~~~~-~~~~l~~~~~~~eW~l~---~~~~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~Y~i~l~iP~~li  249 (461)
T 4aq5_A          174 TYDGTKVSISPES-DRPDLSTFMESGEWVMK---DYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLF  249 (461)
T ss_dssp             SCCTTTEEEECCC-CCCSGGGCCTTCSSEEE---EEEEEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHH
T ss_pred             ccCCceEEEEecc-ccccHHhhhccCceEEe---eeeeEEEEEeecCcCCCCcceEEEEEEEEecccceeeehhhhHHHH
Confidence            5889999998754 46899999999999999   8888888888999999 99999999999999999999999999999


Q ss_pred             HHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccchH
Q psy8686          81 SSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIG  160 (176)
Q Consensus        81 ~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg  160 (176)
                      +++++++||+|+++|||+++                              |+|++|++++|+..+++.+|++|+++|+||
T Consensus       250 v~ls~lsF~Lp~~s~eRv~L------------------------------giT~LLt~tvfl~~v~~~LP~tS~~vplI~  299 (461)
T 4aq5_A          250 SFLTVLVFYLPTDSGEKMTL------------------------------SISVLLSLTVFLLVIVELIPSTSSAVPLIG  299 (461)
T ss_dssp             HHHHHHHHHHHHHCGGGTTH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred             HHHHHheEeccccccceeeh------------------------------hHHHHHHHHHHHHHHHhhcCcccCCcCHHH
Confidence            99999999999999999999                              999999999999999999999998899999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy8686         161 THHRLIFLIIYYLLL  175 (176)
Q Consensus       161 ~~~~~~~~~v~~~ll  175 (176)
                      +|+.++|++++++++
T Consensus       300 ~y~~~~m~~v~~sll  314 (461)
T 4aq5_A          300 KYMLFTMIFVISSII  314 (461)
T ss_dssp             GGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999986

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.95  E-value=3.8e-30  Score=225.90  Aligned_cols=137  Identities=38%  Similarity=0.602  Sum_probs=129.1

Q ss_pred             CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeee-eccCCCceeeEEEEEEEEeccceeEEEEehhhHHH
Q psy8686           2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQ-YECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLI   80 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~-~~~~~~~y~~i~~~i~lrR~~~~y~~~livP~~li   80 (176)
                      .|+++++++..    +.|+++|.+||||++.   +...++++.. |+||++.|+++++++.+|||++||.+++++||+++
T Consensus       152 ~y~~~~i~l~~----~~~~~~~~~~~ew~l~---~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li  224 (369)
T 2bg9_C          152 NYNANEISMDL----IIDPEAFTENGEWEII---HKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLI  224 (369)
T ss_dssp             SCCTTTCEEEC----CCGGGSCCTTSSEEEE---ECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHH
T ss_pred             cccCceEEEEE----ecccccceeCCEEEEe---eeeEEEEEEecCCCCCCCccEEEEEEEEEEccceeEEEEcchHHHH
Confidence            47888998886    3678899999999999   8888888877 99999999999999999999999999999999999


Q ss_pred             HHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccchH
Q psy8686          81 SSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIG  160 (176)
Q Consensus        81 ~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg  160 (176)
                      +++++++||+|+++|||+++                              |+|++|++++++..+++.+|++|+.+|+||
T Consensus       225 v~ls~~sF~lp~~~~~Rv~l------------------------------git~lLt~t~~~~~~~~~lP~~S~~vp~i~  274 (369)
T 2bg9_C          225 SFLAALAFYLPAESGEKMST------------------------------AICVLLAQAVFLLLTSQRLPETALAVPLIG  274 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHTSCCCH
T ss_pred             HHHHhheEEecCCCCCeEEE------------------------------EhHHHHHHHHHHHHHHHhCCCCccCccHHH
Confidence            99999999999999999999                              999999999999999999999997799999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy8686         161 THHRLIFLIIYYLLL  175 (176)
Q Consensus       161 ~~~~~~~~~v~~~ll  175 (176)
                      .|+..||++++++++
T Consensus       275 ~~~~~~~~~v~~sll  289 (369)
T 2bg9_C          275 KYLMFIMSLVTGVVV  289 (369)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999875

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.95  E-value=1.6e-30  Score=228.02  Aligned_cols=141  Identities=35%  Similarity=0.598  Sum_probs=131.3

Q ss_pred             CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeee-eccCCCceeeEEEEEEEEeccceeEEEEehhhHHH
Q psy8686           2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQ-YECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLI   80 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~-~~~~~~~y~~i~~~i~lrR~~~~y~~~livP~~li   80 (176)
                      .|+++++++...+++++++++|.+||||++.   +...++++.. |+||++.|+++++++.+|||++||.+++++||+++
T Consensus       149 ~y~~~~i~l~~~~~~~~~~~~~~~~~eW~l~---~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li  225 (370)
T 2bg9_E          149 TYNAHEVNLQLSAEEGIDPEDFTENGEWTIR---HRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLI  225 (370)
T ss_dssp             SSCTTSCCEECCCSCCCGGGSCCTTSSEEEE---ECCCCEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHH
T ss_pred             ccccceeEEEecCCCcccHhhcccccEEEEe---cceeEEEEEecccCCCCCCcEEEEEEEEEEccCceeEEEehhHHHH
Confidence            4789999998765436889999999999999   8888777776 99999999999999999999999999999999999


Q ss_pred             HHHhhheeecCCC-CCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccch
Q psy8686          81 SSMALLGFTLPPD-SGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLI  159 (176)
Q Consensus        81 ~~l~l~~f~lp~~-sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlI  159 (176)
                      +++++++||+|++ +|||+++                              |+|++|++++|+..+++.+|++|+.+|+|
T Consensus       226 v~ls~~sFwlp~~a~~~Rv~l------------------------------git~lLt~t~~~~~~~~~lP~~S~~vp~i  275 (370)
T 2bg9_E          226 SSLVVLVYFLPAQAGGQKCTL------------------------------SISVLLAQTIFLFLIAQKVPETSLNVPLI  275 (370)
T ss_dssp             HHHHHHHHHHHHHSCGGGHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHeEEeccccCcceeEE------------------------------eeeHHHHHHHHHHHHHHhCCCccCCCChH
Confidence            9999999999999 7999999                              99999999999999999999999779999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy8686         160 GTHHRLIFLIIYYLLL  175 (176)
Q Consensus       160 g~~~~~~~~~v~~~ll  175 (176)
                      |.|+..+|++++++++
T Consensus       276 ~~~~~~~~~~v~~sll  291 (370)
T 2bg9_E          276 GKYLIFVMFVSLVIVT  291 (370)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998875

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.95  E-value=5.7e-30  Score=224.86  Aligned_cols=138  Identities=37%  Similarity=0.637  Sum_probs=128.8

Q ss_pred             CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEEEEehhhHHHH
Q psy8686           2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLIS   81 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~livP~~li~   81 (176)
                      .|+++++++....++++++++|.+||||++.   +...+++   |+||++.|+++++++.+|||++||.+++++||++++
T Consensus       150 ~y~~~~i~l~~~~~~~~~~~~~~~~~eW~l~---~~~~~~~---y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv  223 (370)
T 2bg9_B          150 TYDTSEVILQHALDAMINQDAFTENGQWSIE---HKPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILIS  223 (370)
T ss_dssp             SCCBTSCEEECSCCCCCSTTSCCTTCSSEEC---CCCEEEC---CCTTSSSBCCEEEECCEECCCCSSHHHHHHHHHHHH
T ss_pred             cccccEEEEEeccCCccccccccccceEEEe---ccceEEe---ecCCCCCccEEEEEEEEEEcccceeeeecchHHHHH
Confidence            4789999999733346889999999999999   7777665   899999999999999999999999999999999999


Q ss_pred             HHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccchHH
Q psy8686          82 SMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGT  161 (176)
Q Consensus        82 ~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg~  161 (176)
                      ++++++||+|+++|||+++                              |+|++|++++++..+++.+|++|+.+|+||.
T Consensus       224 ~ls~~sFwlp~~~~~Rv~l------------------------------git~lLt~t~~~~~~~~~lP~~S~~vp~i~~  273 (370)
T 2bg9_B          224 ILAILVFYLPPDAGEKMSL------------------------------SISALLALTVFLLLLADKVPETSLSVPIIIS  273 (370)
T ss_dssp             HHHHHHHHSTTTCTTHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHTTSCCCSH
T ss_pred             HHHhheEEccCCCCceEEE------------------------------EehHHHHHHHHHHHHHhhCCCccccccHHHH
Confidence            9999999999999999999                              9999999999999999999999988999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy8686         162 HHRLIFLIIYYLLL  175 (176)
Q Consensus       162 ~~~~~~~~v~~~ll  175 (176)
                      |+..||++++++++
T Consensus       274 ~~~~~~~~v~~sll  287 (370)
T 2bg9_B          274 YLMFIMILVAFSVI  287 (370)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999875

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.95  E-value=3.2e-30  Score=226.22  Aligned_cols=140  Identities=39%  Similarity=0.742  Sum_probs=131.4

Q ss_pred             CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCC-ceeeEEEEEEEEeccceeEEEEehhhHHH
Q psy8686           2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPE-TYVDITFTIQIRRRTLYYFFNLIVPCVLI   80 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~-~y~~i~~~i~lrR~~~~y~~~livP~~li   80 (176)
                      .|+++++++...+ +++++++|..+|||++.   +...++++..|+||++ +|+++++++.+||+++||.+++++||+++
T Consensus       150 ~y~~~~v~l~~~~-~~~~~~~~~~~~ew~l~---~~~~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li  225 (370)
T 2bg9_A          150 TYDGTKVSISPES-DRPDLSTFMESGEWVMK---DYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLF  225 (370)
T ss_dssp             SCCTTTEEEECCC-CCCSTTSCCTTCSSEEE---EEEEEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHH
T ss_pred             cccCcEEEEEecC-CCcccccccccceEEEE---cceEEEEEEecCCCCCCCeeEEEEEEEEEEccchhhhhhhhHHHHH
Confidence            4789999998754 45889999999999999   8888888888999994 89999999999999999999999999999


Q ss_pred             HHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccchH
Q psy8686          81 SSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIG  160 (176)
Q Consensus        81 ~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg  160 (176)
                      +++++++||+|+++|||+++                              |+|++|++++|+..+++.+|++|+++|+||
T Consensus       226 v~ls~~sF~lp~~~~~Rv~l------------------------------git~lLt~t~~~~~~~~~lP~~S~~vp~i~  275 (370)
T 2bg9_A          226 SFLTVLVFYLPTDSGEKMTL------------------------------SISVLLSLTVFLLVIVELIPSTSSAVPLIG  275 (370)
T ss_dssp             HHHHHHHHHHHHHCGGGHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred             HHHHHHheecCCCCCCeEEE------------------------------eHHHHHHHHHHHHHHHhhCCCCcCCCCHHH
Confidence            99999999999999999999                              999999999999999999999997799999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy8686         161 THHRLIFLIIYYLLL  175 (176)
Q Consensus       161 ~~~~~~~~~v~~~ll  175 (176)
                      .|+..||++++++++
T Consensus       276 ~~~~~~~~~v~~sl~  290 (370)
T 2bg9_A          276 KYMLFTMIFVISSII  290 (370)
T ss_dssp             GGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999876

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...

Probab=99.95  E-value=9.3e-29  Score=212.18  Aligned_cols=138  Identities=16%  Similarity=0.246  Sum_probs=129.2

Q ss_pred             CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEEEEehhhHHHH
Q psy8686           2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLIS   81 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~livP~~li~   81 (176)
                      .|+++++++...+ +..+.+++.+++||++.   +...+++...|+||++.|+++++++.+|||++||.+++++||++++
T Consensus       138 ~y~~~~v~l~~~~-~~~~~~~~~~~~ew~l~---~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~  213 (321)
T 3tlw_A          138 SVDTRNIVLAVDL-EKVGKNDDVFLTGWDIE---SFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFIL  213 (321)
T ss_dssp             CCSSCCEEEEECG-GGCEECTTCCBTTEEEE---EEEEEEEEEEEEETTEEEEEEEEEEEEEECCTTHHHHTHHHHHHHH
T ss_pred             cCChhhEEEEEcC-CcccccccccccceEEE---eeEeEEeeEEecCCCCceeEEEEEEEEEEeeceeehhHHHHHHHHH
Confidence            4789999999864 35777889999999999   8888888888999999999999999999999999999999999999


Q ss_pred             HHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccchHH
Q psy8686          82 SMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGT  161 (176)
Q Consensus        82 ~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg~  161 (176)
                      ++++++|| |+++|||+++                              |+|++|++++|+..+++.+|++|+ +|+||.
T Consensus       214 ~ls~~sF~-p~~~~~Rv~l------------------------------~it~lL~~t~~~~~~~~~lP~~s~-vp~i~~  261 (321)
T 3tlw_A          214 FISWTAFW-STSYEANVTL------------------------------VVSTLIAHIAFNILVETCLPKTPY-MTYTGA  261 (321)
T ss_dssp             HHHGGGGG-CCCHHHHHHH------------------------------HHHHHHHHHHHHHHHCCCCCCCSS-CCHHHH
T ss_pred             HHhheeec-cCCCCCcEEE------------------------------EhhHHHHHHHHHHHHHhhCCCccc-cHHHHH
Confidence            99999999 8888999999                              999999999999999999999995 999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy8686         162 HHRLIFLIIYYLLL  175 (176)
Q Consensus       162 ~~~~~~~~v~~~ll  175 (176)
                      |+..||++++++++
T Consensus       262 ~~~~~~~~v~~sll  275 (321)
T 3tlw_A          262 IIFMIYLFYFVAVI  275 (321)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999886

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=99.94  E-value=6.3e-29  Score=228.00  Aligned_cols=141  Identities=37%  Similarity=0.602  Sum_probs=125.4

Q ss_pred             CccCceEEEEEcCCC-----------CcCcccceecccEEEEEeeeeeeEeeeeeeccCCC-ceeeEEEEEEEEecccee
Q psy8686           2 LSLSNTLDLILKDEA-----------GGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPE-TYVDITFTIQIRRRTLYY   69 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~-----------~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~-~y~~i~~~i~lrR~~~~y   69 (176)
                      .|+++++++...+++           .+|.++|.+||||++.   +...+++...+.||++ .|++++|++.+|||++||
T Consensus       173 ~Y~~~~v~l~~~~~~~~~~~~~~~~~~~d~~~f~~~gEW~l~---~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y  249 (522)
T 4aq5_C          173 NYNANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEII---HKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFY  249 (522)
T ss_dssp             TCCTTTCCEEC---------------CCSTTSCCTTCSEEEE---ECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSH
T ss_pred             cccCceeEEEeccCcccccCccceeeeccHHHceecceEEEe---eeEEEEEeeeccccCCCCcceEEEEEEEeccccee
Confidence            478899999865431           2577899999999999   7777776655555554 699999999999999999


Q ss_pred             EEEEehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhC
Q psy8686          70 FFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESM  149 (176)
Q Consensus        70 ~~~livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~l  149 (176)
                      .+++++||++++++++++||+|+++|||+++                              |+|+||++++|+..+++.+
T Consensus       250 ii~l~iP~~liv~Ls~lsF~Lp~d~~eRisL------------------------------gIT~LLt~tvfl~~v~~~L  299 (522)
T 4aq5_C          250 VINFITPCVLISFLAALAFYLPAESGEKMST------------------------------AICVLLAQAVFLLLTSQRL  299 (522)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHHTTCHHH------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred             eeehhhHHHHHHHHHHheeecCCCcCceEEe------------------------------hHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999                              9999999999999999999


Q ss_pred             CCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686         150 PTTSDAVPLIGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       150 P~tS~~iPlIg~~~~~~~~~v~~~ll  175 (176)
                      |++|+.+|+||+|+.++|++++++++
T Consensus       300 P~tS~~vPlI~~y~~~~m~lv~lSll  325 (522)
T 4aq5_C          300 PETALAVPLIGKYLMFIMSLVTGVVV  325 (522)
T ss_dssp             HHHTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             CcccCCccHHHHHHHHHHHHHHHHHH
Confidence            99998899999999999999999876

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*

Probab=99.94  E-value=5.8e-28  Score=207.31  Aligned_cols=137  Identities=18%  Similarity=0.224  Sum_probs=123.4

Q ss_pred             CccCceEEEEEcCCC-CcCcccceecccEEE-EEeeeeeeE------eeeeeeccCCCceeeEEEEEEEEeccceeEEEE
Q psy8686           2 LSLSNTLDLILKDEA-GGDLTTFITNGEWYL-LVCKQISSK------KNEVQYECCPETYVDITFTIQIRRRTLYYFFNL   73 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~-~idls~f~~n~eW~l-~~~~~~~~~------~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~l   73 (176)
                      .|+++++++...++. ..+.++  +++||++ .   +...+      ++...|+||++.|+++++++.+|||++||.+++
T Consensus       134 ~y~~~~v~l~~~~~~~~~~~~~--~~~ew~l~~---~~~~~~~~~~y~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~  208 (322)
T 3rqw_A          134 SYNNQQLRFSDIQVYTENIDNE--EIDEWWIRG---KASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSF  208 (322)
T ss_dssp             SCSSEEEEEEEEECCSCSSSSC--SSSSEEECC---SCEECCEEEECTTSCCSSSSCCEEEEEEEEEEEEECCHHHHHHT
T ss_pred             ccCcceEEEEECCCcccccCCC--CCCceEEEe---eeEEEeeccccceeeeccCCCCCeEEEEEEEEEEEeeeeeeehH
Confidence            588999999875432 134444  7899999 8   77776      666678999999999999999999999999999


Q ss_pred             ehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCC
Q psy8686          74 IVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTS  153 (176)
Q Consensus        74 ivP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS  153 (176)
                      ++||++++++++++||+| ++|||+++                              |+|++|++++|+..+++.+|++|
T Consensus       209 ~iP~~li~~ls~~sF~lp-~~~~Rv~l------------------------------~it~lL~~~~~~~~~~~~lP~~s  257 (322)
T 3rqw_A          209 ILPLGLIIAASWSVFWLE-SFSERLQT------------------------------SFTLMLTVVAYAFYTSNILPRLP  257 (322)
T ss_dssp             HHHHHHHHHHHHGGGGCS-SHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHSCCCS
T ss_pred             HHHHHHHHHHHHHHhccC-CCCCcEEE------------------------------EEehHHHHHHHHHHHhhhCCCcc
Confidence            999999999999999999 88999999                              99999999999999999999999


Q ss_pred             CCccchHHHHHHHHHHHHHHHh
Q psy8686         154 DAVPLIGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       154 ~~iPlIg~~~~~~~~~v~~~ll  175 (176)
                      + +|+||.|+..+|++++++++
T Consensus       258 ~-vp~i~~~~~~~~~~v~~sll  278 (322)
T 3rqw_A          258 Y-TTVIDQMIIAGYGSIFAAIL  278 (322)
T ss_dssp             S-CCHHHHHHHHHHHHHHHHHH
T ss_pred             c-hHHHHHHHHHHHHHHHHHHH
Confidence            5 99999999999999999876

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=99.94  E-value=6.5e-29  Score=226.19  Aligned_cols=141  Identities=35%  Similarity=0.588  Sum_probs=126.8

Q ss_pred             CccCceEEEEEcCCC-------CcCcccceecccEEEEEeeeeeeEeeeeeeccCCC-ceeeEEEEEEEEeccceeEEEE
Q psy8686           2 LSLSNTLDLILKDEA-------GGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPE-TYVDITFTIQIRRRTLYYFFNL   73 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~-------~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~-~y~~i~~~i~lrR~~~~y~~~l   73 (176)
                      .|+++++++...+++       .+|+++|.+||||++.   +...+++...+.||++ .|++++|++.+|||++||.+++
T Consensus       149 ~y~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~eW~l~---~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l  225 (488)
T 4aq5_E          149 TYNAHEVNLQLSAEEGEVVEWIHIDPEDFTENGEWTIR---HRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINI  225 (488)
T ss_dssp             SSCSSSCCEECCCSCC-------CGGGSCCTTCSEEEE---ECCCEEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHH
T ss_pred             ccccceEEEEeccCCCcceeeeeccHHHccccceEEEE---eeEEEEEEeeeccCCCCCcceEEEEEEEccchhheehhH
Confidence            478999999876432       2577889999999999   7777776655555554 6999999999999999999999


Q ss_pred             ehhhHHHHHHhhheeecCCC-CCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCC
Q psy8686          74 IVPCVLISSMALLGFTLPPD-SGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTT  152 (176)
Q Consensus        74 ivP~~li~~l~l~~f~lp~~-sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~t  152 (176)
                      ++||++++++++++||+|++ +|||+++                              |+|+||++++|+..+++.+|++
T Consensus       226 ~iP~~liv~Ls~lsF~Lp~~a~~eRvsL------------------------------gIt~LLt~tvfl~~v~~~LP~t  275 (488)
T 4aq5_E          226 IAPCVLISSLVVLVYFLPAQAGGQKCTL------------------------------SISVLLAQTIFLFLIAQKVPET  275 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSTHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCCccccCceEEE------------------------------ehHHHHHHHHHHHHHHhhCCcc
Confidence            99999999999999999999 7999999                              9999999999999999999999


Q ss_pred             CCCccchHHHHHHHHHHHHHHHh
Q psy8686         153 SDAVPLIGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       153 S~~iPlIg~~~~~~~~~v~~~ll  175 (176)
                      |+.+|+||+|+.++|+++++|++
T Consensus       276 S~~vPlI~~y~~~~m~lv~~Sll  298 (488)
T 4aq5_E          276 SLNVPLIGKYLIFVMFVSLVIVT  298 (488)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHH
Confidence            98899999999999999999886

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=99.94  E-value=1.9e-28  Score=223.31  Aligned_cols=138  Identities=37%  Similarity=0.609  Sum_probs=126.7

Q ss_pred             CccCceEEEEEcC---------CCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEEE
Q psy8686           2 LSLSNTLDLILKD---------EAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFN   72 (176)
Q Consensus         2 ~~~~~~Vdl~~~~---------~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~   72 (176)
                      .|+++++++...+         +..+|+++|..||||++.   +...+++...|+|   .|+++++++.+|||++||.++
T Consensus       174 ~y~~~~v~l~~~~~~~~~~~~~~~~~~l~~f~~~~eW~l~---~~~~~~~~~~~~~---~y~~l~~~~~lrR~~~~Y~i~  247 (493)
T 4aq5_B          174 TYDTSEVILQHALDAKGEREVKEIMINQDAFTENGQWSIE---HKPSRKNWRSDDP---SYEDVTFYLIIQRKPLFYIVY  247 (493)
T ss_dssp             SCCBTSCEEECCCCC---------CCSGGGCCTTCSSBCC---CCCCEECCCTTSS---SBCCEEEECCCBCCCCSSTTT
T ss_pred             cCccccEEEEeccCCCCccceecccccHHHhccccceeee---eeeEEEEeecCCC---CccEEEEEEEEEeccceeeeh
Confidence            4889999998742         234788899999999999   8888887776775   799999999999999999999


Q ss_pred             EehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCC
Q psy8686          73 LIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTT  152 (176)
Q Consensus        73 livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~t  152 (176)
                      +++||++++++++++||+|+++|||+++                              |+|+||++++|+..+++.+|++
T Consensus       248 l~iP~~liv~Ls~lsF~Lp~~s~eRvsL------------------------------giT~LLt~tvfl~~v~~~LP~t  297 (493)
T 4aq5_B          248 TIVPCILISILAILVFYLPPDAGEKMSL------------------------------SISALLALTVFLLLLADKVPET  297 (493)
T ss_dssp             THHHHHHHHHHHHHHHHSTTTCGGGGTH------------------------------HHHHHHHHHHHHHHHHHHTTTT
T ss_pred             hhhhHHHHHHHHHhEEecCCCCCceEEe------------------------------hHHHHHHHHHHHHHHHhcCCcc
Confidence            9999999999999999999999999999                              9999999999999999999999


Q ss_pred             CCCccchHHHHHHHHHHHHHHHh
Q psy8686         153 SDAVPLIGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       153 S~~iPlIg~~~~~~~~~v~~~ll  175 (176)
                      |+.+|+||.|+.++|++++++++
T Consensus       298 S~~vPlI~~y~~~~m~~v~lsll  320 (493)
T 4aq5_B          298 SLSVPIIISYLMFIMILVAFSVI  320 (493)
T ss_dssp             TTSSCCCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCchHhHHHHHHHHHHHHHH
Confidence            98899999999999999999876

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A

Probab=99.94  E-value=2.5e-28  Score=195.95  Aligned_cols=101  Identities=40%  Similarity=0.709  Sum_probs=81.7

Q ss_pred             eeccCCCceeeEEEEEEEEeccceeEEEEehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCC
Q psy8686          45 QYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSG  124 (176)
Q Consensus        45 ~~~~~~~~y~~i~~~i~lrR~~~~y~~~livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~  124 (176)
                      ...||+|+|++++|++.+|||++||.+|+++||+++++++|++||+|+|+|||+++                        
T Consensus         7 ~~~~~~~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~dsgeRvsl------------------------   62 (164)
T 2ksr_A            7 HSTSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTL------------------------   62 (164)
T ss_dssp             ------------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCSHHHHHH------------------------
T ss_pred             CCCCCCCCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCCCCeEEE------------------------
Confidence            45789999999999999999999999999999999999999999999999999999                        


Q ss_pred             CccccccchhhhHHHHHHHHhhhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686         125 LPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       125 ~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll  175 (176)
                            |+|++|++++|+..+++++|++|+++|+||+|+..+|+++++|++
T Consensus        63 ------git~LLs~tvfl~~v~~~lP~tS~~vPlI~~y~~~~m~~v~~sll  107 (164)
T 2ksr_A           63 ------CISVLLALTVFLLLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIV  107 (164)
T ss_dssp             ------HHHHHHHHHHHHHHHHTTCCSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------eeehHHHHHHHHHHHHHHCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence                  999999999999999999999999999999999999999999886

>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A

Probab=99.93  E-value=4.6e-30  Score=201.33  Aligned_cols=108  Identities=31%  Similarity=0.381  Sum_probs=101.8

Q ss_pred             eeEeeeeeeccCCCce--------eeEEEEEEEEeccceeEEEEehhhHHHHHHhhheeecCCCCCceEEEeeecceeec
Q psy8686          38 SSKKNEVQYECCPETY--------VDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTS  109 (176)
Q Consensus        38 ~~~~~~~~~~~~~~~y--------~~i~~~i~lrR~~~~y~~~livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~  109 (176)
                      ...++.+.|+||+++|        +++++++.+|||++||.+++++||+++++++|++||+|+|+|||+++         
T Consensus        13 ~~~~~~~~y~cC~~~y~~~~~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~dsgeRvsl---------   83 (140)
T 2lkg_A           13 DHILKCVFDKICKIGTESVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDSGEKMTE---------   83 (140)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSSSHHHHH---------
T ss_pred             ccEEEEEEecCCCCCccccCCCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCCCCEEEE---------
Confidence            3455667799999977        79999999999999999999999999999999999999999999999         


Q ss_pred             eeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686         110 AFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll  175 (176)
                                           |+|++|++++|+..+++++|++|+++|+||+|+..+|+++++|++
T Consensus        84 ---------------------git~lLs~tvfl~~v~~~lP~tS~~vPlI~~y~~~~~~~v~~sll  128 (140)
T 2lkg_A           84 ---------------------SKSVLKSLTEKLKKIVELIPSTSSAVPLIGKYMLFTKEFVESSIK  128 (140)
T ss_dssp             ---------------------HHHHHHHHHHHHHGGGGTCTTTGGGHHHHHHHHHHHHHHTTHHHH
T ss_pred             ---------------------eeehHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHH
Confidence                                 999999999999999999999998999999999999999998875

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=99.93  E-value=2.1e-26  Score=199.68  Aligned_cols=138  Identities=20%  Similarity=0.299  Sum_probs=120.5

Q ss_pred             CccCceEEEEEcCCCCcCccc--ceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEEEEehhhHH
Q psy8686           2 LSLSNTLDLILKDEAGGDLTT--FITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVL   79 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~~idls~--f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~livP~~l   79 (176)
                      .|+++++++...+++.++.++  ..+.+||++.   +....+....++  .+.|+++++++.+|||++||.+++++||++
T Consensus       152 ~y~~~~v~l~~~~~~~~~~~~~~~~~~~e~~l~---~~~~~~~~~~~~--~~~y~~l~~~~~l~R~~~~y~~~l~iP~~l  226 (347)
T 3rhw_A          152 AYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLT---NTSTTYCTSVTN--TGIYSCLRTTIQLKREFSFYLLQLYIPSCM  226 (347)
T ss_dssp             SCCTTTEEEEECSSCSEEECTTSGGGCCSEEEE---EEEEEECCEECS--SCEECEEEEEEEEEECSHHHHHHTHHHHHH
T ss_pred             cCChhhEEEEecCCCceeecCcceeEccceEEe---eEEeeEeeeeec--ccceeEEEEEEEEEEEeeEEEEEeehhHHH
Confidence            588999999876544444444  5677999999   666554443333  568999999999999999999999999999


Q ss_pred             HHHHhhheeecCCCC-CceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccc
Q psy8686          80 ISSMALLGFTLPPDS-GEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPL  158 (176)
Q Consensus        80 i~~l~l~~f~lp~~s-ger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPl  158 (176)
                      ++++++++||+|+++ |||+++                              |+|+||++++|+..+++.+|++|+ +|+
T Consensus       227 i~~ls~~sF~lp~~~~~~Rv~l------------------------------git~lLt~tv~~~~~~~~lP~~S~-v~~  275 (347)
T 3rhw_A          227 LVIVSWVSFWFDRTAIPARVTL------------------------------GVTTLLTMTAQSAGINSQLPPVSY-IKA  275 (347)
T ss_dssp             HHHHHHTTTTSCTTCHHHHHHH------------------------------HHHHHHHHHHHHHHHHHTSCCCSS-CCH
T ss_pred             HHHHhheEEeccCCCCcceEEE------------------------------EeehHHHHHHHHHHHHhhCCCccc-eeH
Confidence            999999999999999 899999                              999999999999999999999995 999


Q ss_pred             hHHHHHHHHHHHHHHHh
Q psy8686         159 IGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       159 Ig~~~~~~~~~v~~~ll  175 (176)
                      ||.|+..||++++++++
T Consensus       276 id~~~~~~~~~v~~sll  292 (347)
T 3rhw_A          276 IDVWIGACMTFIFCALL  292 (347)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999886

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}

Probab=99.87  E-value=1.2e-23  Score=163.92  Aligned_cols=85  Identities=41%  Similarity=0.738  Sum_probs=81.4

Q ss_pred             EEEeccceeEEEEehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHH
Q psy8686          61 QIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTV  140 (176)
Q Consensus        61 ~lrR~~~~y~~~livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~  140 (176)
                      ++|||++||.+|+++||++++++++++||+|+|+|||+++                              |+|++|++++
T Consensus         2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s~eRv~l------------------------------git~lLs~tv   51 (137)
T 2lly_A            2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITL------------------------------CISVLLSLTV   51 (137)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHH------------------------------HHHHHHHHHH
T ss_pred             ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCCCCeEEE------------------------------EeeeHHHHHH
Confidence            5799999999999999999999999999999999999999                              9999999999


Q ss_pred             HHHHhhhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686         141 FLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       141 ~l~~v~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll  175 (176)
                      |+..+++++|++|+++|+||+|+..+|++++.+++
T Consensus        52 ~l~~~~~~lP~tS~~vpli~~y~~~~~~~v~~sl~   86 (137)
T 2lly_A           52 FLLLITEIIPSTSSVSPSIGEYLLFTMIFVTLSIV   86 (137)
T ss_dssp             HHHHHHHHCSCCSSSCCSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccchHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999875

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A

Probab=99.76  E-value=8.8e-21  Score=161.45  Aligned_cols=80  Identities=43%  Similarity=0.759  Sum_probs=77.8

Q ss_pred             cceeEEEEehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHh
Q psy8686          66 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLV  145 (176)
Q Consensus        66 ~~~y~~~livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v  145 (176)
                      |+||.+|+++||++++++++++||+|+|+|||+++                              |+|++|++++|+.++
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~gekv~l------------------------------~it~lLs~tvfl~~~   50 (260)
T 1oed_C            1 PLFYVINFITPCVLISFLASLAFYLPAESGEKMST------------------------------AISVLLAQAVFLLLT   50 (260)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHH------------------------------HHHHHHHHHHHHHHH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCeEee------------------------------hHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999                              999999999999999


Q ss_pred             hhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686         146 AESMPTTSDAVPLIGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       146 ~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll  175 (176)
                      ++.+|+||+++|+||+|+..+|+++++|++
T Consensus        51 ~~~lP~tS~~vPli~~y~~~~m~~v~~s~~   80 (260)
T 1oed_C           51 SQRLPETALAVPLIGKYLMFIMSLVTGVIV   80 (260)
T ss_dssp             HHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence            999999998999999999999999999875

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B

Probab=99.75  E-value=9.4e-21  Score=158.50  Aligned_cols=80  Identities=46%  Similarity=0.808  Sum_probs=77.8

Q ss_pred             cceeEEEEehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHh
Q psy8686          66 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLV  145 (176)
Q Consensus        66 ~~~y~~~livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v  145 (176)
                      |+||.+|+++||++++++++++||+|+|+|||+++                              |+|++|++++|+.++
T Consensus         1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~sgerv~l------------------------------~it~lLs~tvfl~~v   50 (227)
T 1oed_A            1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTL------------------------------SISVLLSLTVFLLVI   50 (227)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH------------------------------HHHHHHHHHHHHHHH
T ss_pred             CeEEEehHHHHHHHHHHHHHHHheeCCCCCCeEee------------------------------hHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999                              999999999999999


Q ss_pred             hhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686         146 AESMPTTSDAVPLIGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       146 ~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll  175 (176)
                      ++.+|++|+++|+||+|+..+|+++++|++
T Consensus        51 ~~~lP~tS~~vPli~~y~~~~m~~v~~sl~   80 (227)
T 1oed_A           51 VELIPSTSSAVPLIGKYMLFTMIFVISSII   80 (227)
T ss_dssp             HHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred             HHhCCCcccccchHHHHHHHHHHHHHHHHH
Confidence            999999998999999999999999999875

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B

Probab=99.74  E-value=1.3e-20  Score=159.61  Aligned_cols=80  Identities=43%  Similarity=0.806  Sum_probs=77.7

Q ss_pred             cceeEEEEehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHh
Q psy8686          66 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLV  145 (176)
Q Consensus        66 ~~~y~~~livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v  145 (176)
                      |+||.+|+++||++++++++++||+|+|+|||+++                              |+|++|++++|+.++
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~dsgerv~l------------------------------~it~lLs~tvfl~~v   50 (250)
T 1oed_B            1 PLFYIVYTIIPCILISILAILVFYLPPDAGEKMSL------------------------------SISALLAVTVFLLLL   50 (250)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH------------------------------HHHHHHHHHHHHHHH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHheeCCCCCCeEEe------------------------------hhhHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999                              999999999999999


Q ss_pred             hhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686         146 AESMPTTSDAVPLIGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       146 ~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll  175 (176)
                      ++.+|+||+++|+||+|+..+|+++++|++
T Consensus        51 ~~~lP~tS~~vPli~~y~~~~m~~v~~sl~   80 (250)
T 1oed_B           51 ADKVPETSLSVPIIIRYLMFIMILVAFSVI   80 (250)
T ss_dssp             HHHHHHHHHHSCCCCTTHHHHHHHHHHHHH
T ss_pred             HHHCCCCcccCCcHHHHHHHHHHHHHHHHH
Confidence            999999998999999999999999999875

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1

Probab=99.73  E-value=3.6e-20  Score=157.71  Aligned_cols=80  Identities=41%  Similarity=0.787  Sum_probs=77.6

Q ss_pred             cceeEEEEehhhHHHHHHhhheeecCCC-CCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHH
Q psy8686          66 TLYYFFNLIVPCVLISSMALLGFTLPPD-SGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNL  144 (176)
Q Consensus        66 ~~~y~~~livP~~li~~l~l~~f~lp~~-sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~  144 (176)
                      |+||.+|+++||++++++++++||+|+| +|||+++                              |+|++|++++|+.+
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l------------------------------~it~lLs~tvfl~~   50 (260)
T 1oed_E            1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTL------------------------------SISVLLAQTIFLFL   50 (260)
T ss_dssp             CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHH------------------------------HHHHHHHHHHHHHH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEe------------------------------ehhHHHHHHHHHHH
Confidence            5799999999999999999999999999 8999999                              99999999999999


Q ss_pred             hhhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686         145 VAESMPTTSDAVPLIGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       145 v~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll  175 (176)
                      +++.+|++|+++|+||+|+..+|+++++|++
T Consensus        51 ~~~~lP~tS~~vPli~~y~~~~m~~v~~sl~   81 (260)
T 1oed_E           51 IAQKVPETSLNVPLIGKYLIFVMFVSMLIVM   81 (260)
T ss_dssp             HHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence            9999999998999999999999999999875

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...

Probab=99.29  E-value=5.6e-12  Score=104.01  Aligned_cols=70  Identities=21%  Similarity=0.474  Sum_probs=55.8

Q ss_pred             CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEEEEeh
Q psy8686           2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIV   75 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~liv   75 (176)
                      .|+++++++...++ ++++++|.+|+||++.   +...++++..|+||+++|++++|++.+|||++||.+++++
T Consensus       157 ~y~~~~i~l~~~~~-~~~~~~~~~~~ew~l~---~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~fYii~lil  226 (228)
T 2wn9_A          157 VYSGFEIDLKTDTD-QVDLSSYYASSKYEIL---SATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFRNL  226 (228)
T ss_dssp             SCCTTTEEEECSCS-BCBCTTCCTTCSEEEE---EEEEEEEEECCSSCSSCEEEEEEEEEEEECC---------
T ss_pred             cccccEEEEEecCC-ccchhhceecCCEEEE---EEEEEEEEEeecCCCCCeeEEEEEEEEEEeccceEEEEEE
Confidence            58899999997653 5888999999999999   8888888888999999999999999999999999998764

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*

Probab=99.19  E-value=4.6e-11  Score=97.08  Aligned_cols=66  Identities=24%  Similarity=0.539  Sum_probs=57.9

Q ss_pred             CccCceEEEEEcCCCCcCccccee-cccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEE
Q psy8686           2 LSLSNTLDLILKDEAGGDLTTFIT-NGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFF   71 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~~idls~f~~-n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~   71 (176)
                      .|+++++++...++ .+++++|.+ ++||++.   +...+++...|+||+++|++++|++.+|||++||++
T Consensus       145 ~y~~~~i~l~~~~~-~~~~~~~~~~~~ew~l~---~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~yyil  211 (211)
T 1uw6_A          145 THHSREISVDPTTE-NSDDSEYFSQYSRFEIL---DVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSEIL  211 (211)
T ss_dssp             SCCTTTEEEEECCC-SSCTTTTSCTTSSEEEE---EEEEEEEEEECTTCSSEEEEEEEEEEEEECCCC---
T ss_pred             cccCceEEEEeccc-ccchhhhcccCCCEEEE---eeEEEEEEEEeCCCCCCcceEEEEEEEEEccceeEC
Confidence            58899999998653 688899999 9999999   888888888999999999999999999999999973

>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}

Probab=99.18  E-value=2.5e-11  Score=99.36  Aligned_cols=58  Identities=26%  Similarity=0.472  Sum_probs=53.2

Q ss_pred             CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEe
Q psy8686           2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR   64 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR   64 (176)
                      .|+++++++...  +++|+++|.+||||+++   +.++++++..|+|||++|++++|++.+||
T Consensus       147 ~y~~~~l~l~~~--~~~dl~~~~~n~EW~l~---~~~~~r~~~~Y~CC~~~y~dit~~i~lrR  204 (205)
T 4aoe_A          147 TYDVRDLVLDES--QQVDLTTYAGGERFQLI---EAKQKVNKKTYPCCPQSFEDIELRVTFKK  204 (205)
T ss_dssp             SCCTTTEEEECS--SSCBCTTSCTTCSEEEE---EEEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred             cCChheEEEecC--cccchhccccCCcEEEE---eeEEEEEEEEeCCCCCCcceEEEEEEEEE
Confidence            588999998743  46899999999999999   99999999999999999999999999999

>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}

Probab=99.15  E-value=3.1e-11  Score=98.69  Aligned_cols=58  Identities=31%  Similarity=0.590  Sum_probs=53.4

Q ss_pred             CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEe
Q psy8686           2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR   64 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR   64 (176)
                      .|+++++++....  ++|+++|.+||||++.   +.++++++..|+||+++|++++|++.+||
T Consensus       147 ~y~~~~i~l~~~~--~~dl~~~~~n~EW~l~---~~~~~~~~~~Y~cc~~~Y~~it~~~~lrR  204 (205)
T 4aod_A          147 THSTQELTLEVNA--KVDLGDYASDTRFQLL---NATQQVNRKQYPCCPETYEDTTLSFTFRK  204 (205)
T ss_dssp             SCCTTTEEEECSS--SCBCTTSCTTCSSEEE---EEEEEEEEEEETTEEEEEEEEEEEEEEEC
T ss_pred             cccccEEEEEECC--CcccccccccCCEEEE---eeEEEEEEEEeCCCCCCcceEEEEEEEEC
Confidence            5899999998743  5899999999999999   99999999999999999999999999976

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*

Probab=99.15  E-value=4.4e-11  Score=99.31  Aligned_cols=66  Identities=23%  Similarity=0.481  Sum_probs=53.7

Q ss_pred             CccCceEEEEEcCC-CCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEEE
Q psy8686           2 LSLSNTLDLILKDE-AGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFN   72 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~-~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~   72 (176)
                      .|+++++++...++ +++|+ +|.+|| |+++   ++..++++..|+||+++|++++|++.+||||+||+.+
T Consensus       154 ~y~~~~v~l~~~~~~~~~d~-~~~~n~-W~l~---~~~~~~~~~~y~cc~~~y~~i~f~~~irRrpl~~~~~  220 (230)
T 4afh_A          154 VYSVDEVDIHFMDDKAEVLL-DFYQDS-LEIL---ENSAQRQEVVYPCCESAYVEMKYLLALRSENGNSTYS  220 (230)
T ss_dssp             SCCTTTEEEEEGGGCCSCBC-TTCCCC-CCEE---EEEEEEEEECCTTCSSCEEEEEEEEEEECC-------
T ss_pred             cccCceEEEEECCCCcccce-eeecCc-EEEE---EEEEEEEEEecCCCCCCccEEEEEEEEEEeechhhcc
Confidence            58999999998653 35888 999999 9999   9999999989999999999999999999999999875

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}

Probab=99.09  E-value=1.3e-10  Score=94.54  Aligned_cols=65  Identities=6%  Similarity=0.018  Sum_probs=47.7

Q ss_pred             CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeE
Q psy8686           2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYF   70 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~   70 (176)
                      .|+++++++...+ +.+++++|.+++||++.   +...++++..|+||+++|++++|++.+|||.+.+.
T Consensus       134 ~y~~~~v~l~~~~-~~~~~~~~~~~~ew~l~---~~~~~~~~~~y~cc~~~y~~i~f~i~irR~~~~~~  198 (201)
T 3igq_A          134 SVDTRNIVLAVDL-EKVGKNDDVFLTGWDIE---SFTAVVKPANFALEDRLESKLDYQLRISRQGGHHH  198 (201)
T ss_dssp             CCSSCCEEEEECG-GGCEESCSEEETTEEEE---EEEEEEEC--------CCCEEEEEEEEEEC-----
T ss_pred             CCCceEEEEEecC-CccccccCcccCCeEEE---eeEEEEEEEEeCCCCCccCeEEEEEEEEECCCCCC
Confidence            5899999999865 45888999999999999   99999999999999999999999999999998754

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}

Probab=98.95  E-value=2.1e-09  Score=86.76  Aligned_cols=61  Identities=23%  Similarity=0.478  Sum_probs=55.0

Q ss_pred             CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEec
Q psy8686           2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRR   65 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~   65 (176)
                      .|+++++++...++.++++++|.+++||++.   +...++++..|+||+++|++++|++.+|||
T Consensus       143 ~y~~~~v~l~~~~~~~~~~~~~~~~~ew~l~---~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~  203 (203)
T 2bj0_A          143 THDNKQFALITGEEGVVNIAEYFDSPKFDLL---SATQSLNRKKYSCCENMYDDIEITFAFRKK  203 (203)
T ss_dssp             SCCTTTEEEEECTTTTSCTTTTCCCSSEEEE---EEEEEEEEEECTTCSSEEEEEEEEEEEEEC
T ss_pred             cccCcEEEEEecCCCccchhcceecCCEEEE---EeEEEEEEEecCCCCCCeeEEEEEEEEEEC
Confidence            5899999999865433888999999999999   888989988999999999999999999997

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B

Probab=98.95  E-value=2.2e-09  Score=87.16  Aligned_cols=61  Identities=28%  Similarity=0.599  Sum_probs=55.5

Q ss_pred             CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCC-CceeeEEEEEEEEecc
Q psy8686           2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCP-ETYVDITFTIQIRRRT   66 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~-~~y~~i~~~i~lrR~~   66 (176)
                      .|+++++++...++ .+++++|.++|||++.   +...+++...|+||+ ++|++++|++.+||||
T Consensus       151 ~y~~~~v~l~~~~~-~~~~~~~~~~~ew~l~---~~~~~~~~~~y~~~~~~~y~~i~~~~~l~R~p  212 (212)
T 2qc1_B          151 TYDGSAVAINPESD-QPDLSNFMESGEWVIK---EARGWKHWVFYSCCPTTPYLDITYHFVMQRLP  212 (212)
T ss_dssp             SCCTTTEEEEESCS-SCBCTTCCCCSSEEEE---EEEEEEEEEEETTCSSCCEEEEEEEEEEEECC
T ss_pred             cccCceEEEEeccc-ccchhhCccCCCEEEE---EeEEEEEEEecCCCCCCCeeEEEEEEEEEECc
Confidence            58899999998654 5889999999999999   888888888999999 8999999999999997

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*

Probab=98.95  E-value=1.6e-09  Score=87.85  Aligned_cols=59  Identities=34%  Similarity=0.695  Sum_probs=53.3

Q ss_pred             CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEecc
Q psy8686           2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRT   66 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~   66 (176)
                      .|+++++++...   .+++++|.+||||++.   ++..+++...|+||+++|++++|++.+|||.
T Consensus       146 ~y~~~~v~l~~~---~~~~~~~~~~~eW~l~---~~~~~~~~~~y~~c~~~y~~i~~~~~lrRr~  204 (204)
T 3sq6_A          146 THHSRELDLQMQ---EADISGYIPYSRFELV---GVTQKRSERFYECCKEPYPDVTFTVTFRKKG  204 (204)
T ss_dssp             SCCTTTEEEECC---CCCCTTSCSSSSEEEE---EEEEEEEEEECSSSSSEEEEEEEEEEEEECC
T ss_pred             cccCeEEEEEec---cCCHHHcccCCCEEEE---EeEEEEEEEeeCCCCCCcceEEEEEEEEECc
Confidence            588999999853   3788899999999999   9999999999999999999999999999984

>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1

Probab=97.71  E-value=3.2e-06  Score=59.90  Aligned_cols=44  Identities=30%  Similarity=0.387  Sum_probs=42.2

Q ss_pred             cchhhhHHHHHHHHhhhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686         131 GVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       131 ~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll  175 (176)
                      |+|.+|+++.....+..++|+.| ++..|+.|+..|+++++.+|+
T Consensus         8 GittvLtmtt~~~~~~~~lPkVS-YikAiDvw~~~C~~FVF~aLl   51 (76)
T 1vry_A            8 GITTVLTLTTQSSGSRASLPKVS-YVKAIDIWLAVCLLFVFSALL   51 (76)
T ss_dssp             HHHHHHHHHHHHHCTTTCCCSHH-HHHHHHHTHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhcCcccCCCCcc-chHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999 699999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	176
d1oedc_	260	f.36.1.1 (C:) Acetylcholine receptor protein, delt	9e-21
d1oedb_	250	f.36.1.1 (B:) Acetylcholine receptor protein, beta	5e-20
d1oede_	260	f.36.1.1 (E:) Acetylcholine receptor protein, gamm	1e-18
d1oeda_	227	f.36.1.1 (A:) Acetylcholine receptor protein, alph	2e-17
d1uw6a_	208	b.96.1.1 (A:) Acetylcholine binding protein (ACHBP	9e-15

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 84.1 bits (207), Expect = 9e-21
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 30/104 (28%)

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           L+Y  N I PCVLIS +A L F LP +SGEK++                           
Sbjct: 2   LFYVINFITPCVLISFLASLAFYLPAESGEKMST-------------------------- 35

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
                +++LL+  VFL L ++ +P T+ AVPLIG +   I  ++
Sbjct: 36  ----AISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLV 75

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 81.7 bits (201), Expect = 5e-20
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 30/104 (28%)

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           L+Y    I+PC+LIS +A+L F LPPD+GEK++L                          
Sbjct: 2   LFYIVYTIIPCILISILAILVFYLPPDAGEKMSL-------------------------- 35

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
                ++ LL++TVFL L+A+ +P TS +VP+I  +   I +++
Sbjct: 36  ----SISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILV 75

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 78.3 bits (192), Expect = 1e-18
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 31/110 (28%)

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVYKGFLRTSAFFNNSVQCTRDFSGL 125
           L+Y  N+I PCVLISS+ +L + LP  + G+K TL                         
Sbjct: 2   LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTL------------------------- 36

Query: 126 PLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLL 175
                 +++LL+ T+FL L+A+ +P TS  VPLIG +   +  +   +++
Sbjct: 37  -----SISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIVM 81

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 74.8 bits (183), Expect = 2e-17
 Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 30/105 (28%)

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           LY+  N+I+PC+L S +  L F LP DSGEK+TL                          
Sbjct: 2   LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTL-------------------------- 35

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIY 171
                +++LLSLTVFL ++ E +P+TS AVPLIG +     + + 
Sbjct: 36  ----SISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVI 76

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

 Score = 67.1 bits (163), Expect = 9e-15
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
           S  + +    E   D   F     + +L    ++ KKN V Y CCPE Y D+  ++  R+
Sbjct: 148 SREISVDPTTENSDDSEYFSQYSRFEIL---DVTQKKNSVTYSCCPEAYEDVEVSLNFRK 204

Query: 65  R 65
           +
Sbjct: 205 K 205

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1oedc_	260	Acetylcholine receptor protein, delta chain {Marbl	99.81
d1oede_	260	Acetylcholine receptor protein, gamma chain {Marbl	99.8
d1oeda_	227	Acetylcholine receptor protein, alpha chain {Marbl	99.79
d1oedb_	250	Acetylcholine receptor protein, beta chain {Marble	99.79
d1uw6a_	208	Acetylcholine binding protein (ACHBP) {Great pond	99.19

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.81  E-value=8.4e-23  Score=166.06  Aligned_cols=80  Identities=43%  Similarity=0.759  Sum_probs=78.1

Q ss_pred             cceeEEEEehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHh
Q psy8686          66 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLV  145 (176)
Q Consensus        66 ~~~y~~~livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v  145 (176)
                      |+||.+|+++||++++++++++||+|+|+|||+++                              |+|+|||+++|+.++
T Consensus         1 pl~y~~n~~~P~~~~~~l~~~~f~lp~~~~~r~~l------------------------------~it~lLs~~vf~~~v   50 (260)
T d1oedc_           1 PLFYVINFITPCVLISFLASLAFYLPAESGEKMST------------------------------AISVLLAQAVFLLLT   50 (260)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHH------------------------------HHHHHHHHHHHHHHH
T ss_pred             CceEEEhHHHHHHHHHHHHHHHeeeCCCCCCcEEe------------------------------eHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999                              999999999999999


Q ss_pred             hhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686         146 AESMPTTSDAVPLIGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       146 ~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll  175 (176)
                      +|.+|++|+++|+||.|+..+|++++++++
T Consensus        51 ~~~lP~tS~~vPli~~y~~~~~~~v~~s~~   80 (260)
T d1oedc_          51 SQRLPETALAVPLIGKYLMFIMSLVTGVIV   80 (260)
T ss_dssp             HHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999875

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.80  E-value=2.5e-22  Score=164.10  Aligned_cols=80  Identities=41%  Similarity=0.790  Sum_probs=77.8

Q ss_pred             cceeEEEEehhhHHHHHHhhheeecCCCC-CceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHH
Q psy8686          66 TLYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNL  144 (176)
Q Consensus        66 ~~~y~~~livP~~li~~l~l~~f~lp~~s-ger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~  144 (176)
                      |+||.+++++||+++++++|++||+|+|+ |||+++                              |+|+|||+++|+..
T Consensus         1 PlyY~~~lilP~~li~~ls~~~F~lp~~~~g~Rv~l------------------------------~it~lLs~~~~~~~   50 (260)
T d1oede_           1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTL------------------------------SISVLLAQTIFLFL   50 (260)
T ss_dssp             CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHH------------------------------HHHHHHHHHHHHHH
T ss_pred             CcEEEEhHHHHHHHHHHHHHHheEecCCCCCCcEEe------------------------------ehhHHHHHHHHHHH
Confidence            78999999999999999999999999998 999999                              99999999999999


Q ss_pred             hhhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686         145 VAESMPTTSDAVPLIGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       145 v~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll  175 (176)
                      +++.+|++|+++|+||.|+..+|++++++++
T Consensus        51 v~~~lP~tS~~vPli~~~~~~~~~~v~~sl~   81 (260)
T d1oede_          51 IAQKVPETSLNVPLIGKYLIFVMFVSMLIVM   81 (260)
T ss_dssp             HHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred             HHHhCCCccccccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.79  E-value=2.7e-22  Score=162.01  Aligned_cols=80  Identities=46%  Similarity=0.808  Sum_probs=77.9

Q ss_pred             cceeEEEEehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHh
Q psy8686          66 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLV  145 (176)
Q Consensus        66 ~~~y~~~livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v  145 (176)
                      |+||.+++++||++++++++++||+|+|+|||+++                              |+|++||+++|+..+
T Consensus         1 plyy~~~li~P~~li~~ls~~~F~lp~~s~eRi~l------------------------------~it~lL~~~v~~~~v   50 (227)
T d1oeda_           1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTL------------------------------SISVLLSLTVFLLVI   50 (227)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH------------------------------HHHHHHHHHHHHHHH
T ss_pred             CcEEEehHHHHHHHHHHHHHHHheecCCCCccEEe------------------------------eHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999                              999999999999999


Q ss_pred             hhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686         146 AESMPTTSDAVPLIGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       146 ~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll  175 (176)
                      ++++|++|+++|+||.|+..+|++++++++
T Consensus        51 ~~~lP~tS~~vPli~~y~~~~~~~v~~sli   80 (227)
T d1oeda_          51 VELIPSTSSAVPLIGKYMLFTMIFVISSII   80 (227)
T ss_dssp             HHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred             HHhCCCcccCcCccchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999875

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.79  E-value=2.7e-22  Score=163.04  Aligned_cols=80  Identities=43%  Similarity=0.806  Sum_probs=78.0

Q ss_pred             cceeEEEEehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHh
Q psy8686          66 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLV  145 (176)
Q Consensus        66 ~~~y~~~livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v  145 (176)
                      |+||.+|+++||++++.+++++||+|+|+|||+++                              |+|+|||+++|+.++
T Consensus         1 pl~y~~~~~~P~~~i~~l~~~~f~~p~~~~er~~l------------------------------~it~lL~~~~~~~~v   50 (250)
T d1oedb_           1 PLFYIVYTIIPCILISILAILVFYLPPDAGEKMSL------------------------------SISALLAVTVFLLLL   50 (250)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH------------------------------HHHHHHHHHHHHHHH
T ss_pred             CcEEEEeHHHHHHHHHHHHHHHheecCCCCCcEEe------------------------------eHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999                              999999999999999


Q ss_pred             hhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686         146 AESMPTTSDAVPLIGTHHRLIFLIIYYLLL  175 (176)
Q Consensus       146 ~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll  175 (176)
                      ++.+|++|+++|+||.|+..+|++++++++
T Consensus        51 ~~~~P~~s~~~p~i~~~~~~~~~~~~~~~~   80 (250)
T d1oedb_          51 ADKVPETSLSVPIIIRYLMFIMILVAFSVI   80 (250)
T ss_dssp             HHHHHHHHHHSCCCCTTHHHHHHHHHHHHH
T ss_pred             HHhCCCCcCcchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998875

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]}

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

Probab=99.19  E-value=2.3e-11  Score=97.35  Aligned_cols=63  Identities=27%  Similarity=0.549  Sum_probs=56.5

Q ss_pred             CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccc
Q psy8686           2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTL   67 (176)
Q Consensus         2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~   67 (176)
                      .|+++++++....+++.+.+.|.+||||+++   ++++++++..|+||+++|++++|++.+|||+.
T Consensus       145 ~y~~~~i~l~~~~~~~~~~~~~~~~~eW~l~---~~~~~~~~~~y~cc~~~y~~i~~~i~lrRr~~  207 (208)
T d1uw6a_         145 THHSREISVDPTTENSDDSEYFSQYSRFEIL---DVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGR  207 (208)
T ss_dssp             SCCTTTEEEEECCCSSCTTTTSCTTSSEEEE---EEEEEEEEEECTTCSSEEEEEEEEEEEEECCC
T ss_pred             eeccceEEEeeccCCCccccccccCCCEEEE---EeEEEEEEEEeCCCCCCcceEEEEEEEEECCC
Confidence            5899999999876555556778999999999   99999999999999999999999999999984