Psyllid ID: psy8691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MVSLCNIMVSLCVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGEWYNSWNE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccHHHHHHHHHccccEEEEEEccccccccccEEccEEEEccccHHHHHHHHHccccEEEEEEEcccccEEEEEEEEccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHcEHHHcccccccccccccccccccccccHHHHHHHccccEEEEEcccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHcccEEcccccHHHHHHHHHHcccEEEEEEEcccccEEEEEEEEcccccccccccEEcccccccHHccccEEEEEEEEEEcccHHccEEEcccccccEEccccc
Coil and Loop (DISEMBL)
MVSLCNIMVSLCVEVKKArsaekvtarpekptirtydyITKINYLFRDARFFviksnnsenvdiaksqgvwstlPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVresgkfsgfarlaseadhgvspvkwvlppglsgkvlngvfkidwvsrkelpftstlhlynswnegewynswne
Flexible Loop (DISEMBL)
MVSLCNIMVSLCVEvkkarsaekvtarpekptirtydyiTKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWvsrkelpftstlhlynswnegewynswne
Low Complexity Region (SEG)
MVSLCNIMVSLCVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGEWYNSWNE
Disordered region (IsUnstruct)
***LCNIMVSLCVEVKKA************PTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTL*******NQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGEWYNSW**
Disordered Region (DISOPRED)
******************************************************************************QKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFA*******************GLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE*********
Disordered Region (DISEMBL)
MVSLCNIMVSLCVEVKK**********PEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGEWYNSWNE
Disordered Region (DISPRO)
****CNIM***C**********************TYDYITKINYLFRDARFFVIKSN***********************LNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGEWYNSWN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSLCNIMVSLCVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGEWYNSWNE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q96MU7	727	YTH domain-containing pro	yes	N/A	0.592	0.171	0.5	2e-41
Q9QY02	738	YTH domain-containing pro	yes	N/A	0.592	0.169	0.493	2e-40
Q5R746	671	YTH domain-containing pro	no	N/A	0.417	0.131	0.463	2e-16
B2RR83	1445	Probable ATP-dependent RN	no	N/A	0.407	0.059	0.473	6e-16
Q9H6S0	1430	Probable ATP-dependent RN	no	N/A	0.407	0.060	0.473	1e-15
Q0DA50	665	Zinc finger CCCH domain-c	yes	N/A	0.526	0.166	0.272	1e-09
A9LNK9	631	Cleavage and polyadenylat	no	N/A	0.563	0.188	0.330	1e-07
P59326	559	YTH domain family protein	no	N/A	0.483	0.182	0.280	0.0005
Q9BYJ9	559	YTH domain family protein	no	N/A	0.483	0.182	0.280	0.0006

>sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3

 Score =  168 bits (426), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/166 (50%), Positives = 104/166 (62%), Gaps = 41/166 (24%)

Query: 37  DYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFS 96
           D  +K+ Y+ +DARFF+IKSNN ENV +AK++G                           
Sbjct: 343 DQTSKLKYVLQDARFFLIKSNNHENVSLAKAKG--------------------------- 375

Query: 97  NYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
                         VWSTLP NE+KLN A+R +R+V+LIFSVRESGKF GFARL+SE+ H
Sbjct: 376 --------------VWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHH 421

Query: 157 GVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
           G SP+ WVLP G+S K+L GVFKIDW+ R+ELPFT + HL N WNE
Sbjct: 422 GGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 467

May be part of a signal transduction pathway that influences splice site selection.
Homo sapiens (taxid: 9606)

>sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=1

 Score =  165 bits (418), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 103/166 (62%), Gaps = 41/166 (24%)

Query: 37  DYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFS 96
           D  +K+  + +DARFF+IKSNN ENV +AK++                            
Sbjct: 346 DQTSKLKSVLQDARFFLIKSNNHENVSLAKAK---------------------------- 377

Query: 97  NYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
                        GVWSTLP NE+KLN A+R +R+V+LIFSVRESGKF GFARL+SE+ H
Sbjct: 378 -------------GVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHH 424

Query: 157 GVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
           G SP+ WVLP G+S K+L GVFKIDW+ R+ELPFT + HL N WNE
Sbjct: 425 GGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 470

May be part of a signal transduction pathway that influences splice site selection.

Rattus norvegicus (taxid: 10116)

>sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/95 (46%), Positives = 61/95 (64%), Gaps = 7/95 (7%)

Query: 110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
           G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R++SE     S   W    G 
Sbjct: 549 GIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQ-DW----GS 603

Query: 170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE 204
           +G  L GVFK++W+ ++ LPF    HL N WN+ +
Sbjct: 604 AG--LGGVFKVEWIRKESLPFQFAHHLLNPWNDNK 636

Pongo abelii (taxid: 9601)

>sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 7/93 (7%)

Query: 110  GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
            G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R++SE     S   W    G 
Sbjct: 1323 GIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQ-DW----GS 1377

Query: 170  SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
            +G  L GVFK++W+ ++ LPF    HL N WN+
Sbjct: 1378 AG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 1408

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 7/93 (7%)

Query: 110  GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
            G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R++SE     S   W    G 
Sbjct: 1308 GIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQ-DW----GS 1362

Query: 170  SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
            +G  L GVFK++W+ ++ LPF    HL N WN+
Sbjct: 1363 AG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 1393

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 43/154 (27%)

Query: 49  ARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKV 108
           +R+F++KS N EN++I+  QG+                                      
Sbjct: 260 SRYFIVKSCNRENLEISVQQGI-------------------------------------- 281

Query: 109 YGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPG 168
              W+T   NE KLN+A+    NV+LIFS+  +  F G A++ S     +    W    G
Sbjct: 282 ---WATQRSNEAKLNEAFESIENVILIFSINRTRNFQGCAKMTSRIGGYIGGGNWKSAHG 338

Query: 169 LSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
            +    N  F I W+   EL F  T HL N +N+
Sbjct: 339 TAHYGRN--FSIQWLKLCELSFQKTHHLRNPYND 370

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A9LNK9|CPSF_ARATH Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 8/127 (6%)

Query: 82  NQAYRESRDVLLIFSNYYV---SNELNFKV---YGVWSTLPQNEQKLNQAYRESRNVLLI 135
           +Q  R S  +    + Y+V   +N  NF++    GVW+T   NE KLN+A+    NV+LI
Sbjct: 223 DQTNRTSHPLPQGVNRYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILI 282

Query: 136 FSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLH 195
           FSV  +  F G A++ S     +    W    G +    N  F + W+   EL F  T +
Sbjct: 283 FSVNRTRHFQGCAKMTSRIGGYIGGGNWKHEHGTAQYGRN--FSVKWLKLCELSFHKTRN 340

Query: 196 LYNSWNE 202
           L N +NE
Sbjct: 341 LRNPYNE 347

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation. May interact with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition (By similarity). Binds RNA in a calcium-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|P59326|YTHD1_MOUSE YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 12/114 (10%)

Query: 87  ESRDVLLIFSNYYVSNELNFKV-YGVWSTLPQNEQKLNQAYRESRN---VLLIFSVRESG 142
           +S  V +I S  Y  ++++  + Y +W +     ++L+ A+R   +   V L+FSV  SG
Sbjct: 387 KSGRVFIIKS--YSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKGPVYLLFSVNGSG 444

Query: 143 KFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHL 196
            F G A + S  D+G S   W      S     G F + W+  K++P     H+
Sbjct: 445 HFCGVAEMKSPVDYGTSAGVW------SQDKWKGKFDVKWIFVKDVPNNQLRHI 492

Mus musculus (taxid: 10090)

>sp|Q9BYJ9|YTHD1_HUMAN YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 12/114 (10%)

Query: 87  ESRDVLLIFSNYYVSNELNFKV-YGVWSTLPQNEQKLNQAYR---ESRNVLLIFSVRESG 142
           +S  V +I S  Y  ++++  + Y +W +     ++L+ A+R       V L+FSV  SG
Sbjct: 387 KSGRVFIIKS--YSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKGPVYLLFSVNGSG 444

Query: 143 KFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHL 196
            F G A + S  D+G S   W      S     G F + W+  K++P     H+
Sbjct: 445 HFCGVAEMKSPVDYGTSAGVW------SQDKWKGKFDVQWIFVKDVPNNQLRHI 492

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
307212497	453	YTH domain-containing protein 1 [Harpegn	0.701	0.326	0.520	3e-50
340719507	458	PREDICTED: YTH domain-containing protein	0.701	0.323	0.528	4e-50
380029289	456	PREDICTED: YTH domain-containing protein	0.696	0.322	0.528	4e-50
307183182	453	YTH domain-containing protein 1 [Campono	0.682	0.317	0.539	5e-50
328784602	457	PREDICTED: YTH domain-containing protein	0.701	0.323	0.528	5e-50
350410519	457	PREDICTED: YTH domain-containing protein	0.701	0.323	0.523	6e-50
332025281	451	YTH domain-containing protein 1 [Acromyr	0.701	0.328	0.528	2e-49
383866424	351	PREDICTED: YTH domain-containing protein	0.682	0.410	0.528	3e-49
357628554	443	hypothetical protein KGM_02742 [Danaus p	0.620	0.295	0.575	1e-48
322785605	457	hypothetical protein SINV_06827 [Solenop	0.701	0.323	0.517	2e-48

>gi|307212497|gb|EFN88228.1| YTH domain-containing protein 1 [Harpegnathos saltator]

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 103/198 (52%), Positives = 129/198 (65%), Gaps = 50/198 (25%)

Query: 16  KKARSAEKVTARPE---------KPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAK 66
           K+ARS +  ++ PE         K T ++YDY TK+NYLFRDARFF+IKSNN+ENV ++K
Sbjct: 74  KRARSRDTKSSSPEPKRAKSKESKGTAKSYDYTTKLNYLFRDARFFIIKSNNAENVTLSK 133

Query: 67  SQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAY 126
           ++                                         GVWSTLPQNE  LNQAY
Sbjct: 134 AK-----------------------------------------GVWSTLPQNEANLNQAY 152

Query: 127 RESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRK 186
           +ESRNVLLIFSV+ESGKF+GFARL++E+    +P+ WVLPPGLS KVL GVFK+DW+ RK
Sbjct: 153 KESRNVLLIFSVKESGKFAGFARLSTESRRDGAPISWVLPPGLSAKVLGGVFKVDWICRK 212

Query: 187 ELPFTSTLHLYNSWNEGE 204
           ELPFT+TLHLYN WN+G+
Sbjct: 213 ELPFTATLHLYNPWNDGK 230

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719507|ref|XP_003398194.1| PREDICTED: YTH domain-containing protein 1-like [Bombus terrestris]

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 103/195 (52%), Positives = 125/195 (64%), Gaps = 47/195 (24%)

Query: 10  SLCVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQG 69
           S   E K+ARS E       K   ++YDY TK+NYLFRDARFF+IKSNN+ENV ++K++ 
Sbjct: 81  SSSPETKRARSKE------SKGVTKSYDYATKLNYLFRDARFFIIKSNNAENVTLSKAK- 133

Query: 70  VWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRES 129
                                                   GVWSTLPQNE  LNQAYRES
Sbjct: 134 ----------------------------------------GVWSTLPQNEANLNQAYRES 153

Query: 130 RNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELP 189
           RNVLLIFSV+ESGKF+GFARL++E+    +P+ WVLPPGLS K L GVFK+DW+ RKELP
Sbjct: 154 RNVLLIFSVKESGKFAGFARLSTESRRDGAPISWVLPPGLSAKALGGVFKVDWICRKELP 213

Query: 190 FTSTLHLYNSWNEGE 204
           FT+TLHLYN WN+G+
Sbjct: 214 FTATLHLYNPWNDGK 228

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029289|ref|XP_003698309.1| PREDICTED: YTH domain-containing protein 1-like [Apis florea]

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 103/195 (52%), Positives = 125/195 (64%), Gaps = 48/195 (24%)

Query: 10  SLCVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQG 69
           S   E K+ARS EK          ++YDY TK+NYLFRDARFF+IKSNN+ENV ++K++ 
Sbjct: 81  SSSPEAKRARSKEKGI-------TKSYDYATKLNYLFRDARFFIIKSNNAENVTLSKAK- 132

Query: 70  VWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRES 129
                                                   GVWSTLPQNE  LNQAYRES
Sbjct: 133 ----------------------------------------GVWSTLPQNEANLNQAYRES 152

Query: 130 RNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELP 189
           RNVLLIFSV+ESGKF+GFARL++E+    +P+ WVLPPGLS K L GVFK+DW+ RKELP
Sbjct: 153 RNVLLIFSVKESGKFAGFARLSTESRRDGAPISWVLPPGLSAKALGGVFKVDWICRKELP 212

Query: 190 FTSTLHLYNSWNEGE 204
           FT+TLHLYN WN+G+
Sbjct: 213 FTATLHLYNPWNDGK 227

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183182|gb|EFN70091.1| YTH domain-containing protein 1 [Camponotus floridanus]

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 103/191 (53%), Positives = 122/191 (63%), Gaps = 47/191 (24%)

Query: 14  EVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWST 73
           E K+ARS E       K T ++YDY TK+NYLFRDARFF+IKSNN+ENV ++        
Sbjct: 87  EPKRARSKE------SKGTTKSYDYATKLNYLFRDARFFIIKSNNAENVTLS-------- 132

Query: 74  LPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVL 133
                                            K  GVWSTLPQNE  LNQAYRESRNVL
Sbjct: 133 ---------------------------------KAKGVWSTLPQNEANLNQAYRESRNVL 159

Query: 134 LIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTST 193
           L+FSV+ESGKF+GFARL++E+     PV WVLPPGLS K L GVFK+DW+ RKELPFT+T
Sbjct: 160 LVFSVKESGKFAGFARLSTESRRDAGPVSWVLPPGLSAKALGGVFKVDWICRKELPFTAT 219

Query: 194 LHLYNSWNEGE 204
           LHLYN WN+G+
Sbjct: 220 LHLYNPWNDGK 230

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784602|ref|XP_395221.4| PREDICTED: YTH domain-containing protein 1-like [Apis mellifera]

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 103/195 (52%), Positives = 125/195 (64%), Gaps = 47/195 (24%)

Query: 10  SLCVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQG 69
           S   E K+ARS E       K   ++YDY TK+NYLFRDARFF+IKSNN+ENV ++K++ 
Sbjct: 81  SSSPETKRARSKE------SKGITKSYDYATKLNYLFRDARFFIIKSNNAENVTLSKAK- 133

Query: 70  VWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRES 129
                                                   GVWSTLPQNE  LNQAYRES
Sbjct: 134 ----------------------------------------GVWSTLPQNEANLNQAYRES 153

Query: 130 RNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELP 189
           RNVLLIFSV+ESGKF+GFARL++E+    +P+ WVLPPGLS K L GVFK+DW+ RKELP
Sbjct: 154 RNVLLIFSVKESGKFAGFARLSTESRRDGAPISWVLPPGLSAKALGGVFKVDWICRKELP 213

Query: 190 FTSTLHLYNSWNEGE 204
           FT+TLHLYN WN+G+
Sbjct: 214 FTATLHLYNPWNDGK 228

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350410519|ref|XP_003489065.1| PREDICTED: YTH domain-containing protein 1-like [Bombus impatiens]

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 102/195 (52%), Positives = 125/195 (64%), Gaps = 47/195 (24%)

Query: 10  SLCVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQG 69
           S   E K+ARS E       K   ++YDY TK+NYLFRDARFF+IKSNN+ENV ++K++ 
Sbjct: 81  SSSPETKRARSKE------SKGVTKSYDYATKLNYLFRDARFFIIKSNNAENVTLSKAK- 133

Query: 70  VWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRES 129
                                                   GVWSTLPQNE  LNQAYRES
Sbjct: 134 ----------------------------------------GVWSTLPQNEANLNQAYRES 153

Query: 130 RNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELP 189
           RNVLL+FSV+ESGKF+GFARL++E+    +P+ WVLPPGLS K L GVFK+DW+ RKELP
Sbjct: 154 RNVLLVFSVKESGKFAGFARLSTESRRDGAPISWVLPPGLSAKALGGVFKVDWICRKELP 213

Query: 190 FTSTLHLYNSWNEGE 204
           FT+TLHLYN WN+G+
Sbjct: 214 FTATLHLYNPWNDGK 228

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025281|gb|EGI65452.1| YTH domain-containing protein 1 [Acromyrmex echinatior]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/195 (52%), Positives = 121/195 (62%), Gaps = 47/195 (24%)

Query: 10  SLCVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQG 69
           S   E K+ARS +       K T + YDY TK+NYLFRDARFF+IKSNN+ENV ++    
Sbjct: 83  SSSPEPKRARSKD------SKGTTKNYDYTTKLNYLFRDARFFIIKSNNAENVTLS---- 132

Query: 70  VWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRES 129
                                                K  GVWSTLPQNE  LNQAYRES
Sbjct: 133 -------------------------------------KAKGVWSTLPQNEANLNQAYRES 155

Query: 130 RNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELP 189
           RNVLL+FSV+ESGKF+GFARL +E+     PV WVLPPGLS K L GVFK+DW+ RKELP
Sbjct: 156 RNVLLVFSVKESGKFAGFARLCTESRRDAGPVSWVLPPGLSAKALGGVFKVDWICRKELP 215

Query: 190 FTSTLHLYNSWNEGE 204
           FT+TLHLYN WN+G+
Sbjct: 216 FTATLHLYNPWNDGK 230

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866424|ref|XP_003708670.1| PREDICTED: YTH domain-containing protein 1-like, partial [Megachile rotundata]

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 121/191 (63%), Gaps = 47/191 (24%)

Query: 14  EVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWST 73
           E K+ARS E       K   ++YDY TK+NYLFRDARFF+IKSNN+ENV ++        
Sbjct: 85  ETKRARSKE------TKGIAKSYDYATKLNYLFRDARFFIIKSNNAENVTLS-------- 130

Query: 74  LPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVL 133
                                            K  GVWSTLPQNE  LNQAYRESRNVL
Sbjct: 131 ---------------------------------KAKGVWSTLPQNEANLNQAYRESRNVL 157

Query: 134 LIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTST 193
           L+FSV+ESGKF+GFARL +E+    +P+ WVLPPGLS K L GVFK+DW+ RKELPFT+T
Sbjct: 158 LVFSVKESGKFAGFARLGTESRRDGAPISWVLPPGLSAKALGGVFKVDWICRKELPFTAT 217

Query: 194 LHLYNSWNEGE 204
           LHLYN WN+G+
Sbjct: 218 LHLYNPWNDGK 228

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628554|gb|EHJ77849.1| hypothetical protein KGM_02742 [Danaus plexippus]

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/172 (57%), Positives = 115/172 (66%), Gaps = 41/172 (23%)

Query: 33  IRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVL 92
           I+TYDY+TK+NYLFRD RFF+IKSNNSEN+ ++                           
Sbjct: 92  IKTYDYMTKLNYLFRDTRFFLIKSNNSENITLS--------------------------- 124

Query: 93  LIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLAS 152
                         K  GVWSTLPQNE  LNQAYRESRNVLLIFSV+ESGKF+GFARLAS
Sbjct: 125 --------------KAKGVWSTLPQNEANLNQAYRESRNVLLIFSVKESGKFAGFARLAS 170

Query: 153 EADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE 204
           E+   V  + WVLPPGLS KVL+GVFK+DW+ RKEL F+STLHLYN WNEG+
Sbjct: 171 ESRRDVPSISWVLPPGLSAKVLDGVFKVDWICRKELSFSSTLHLYNPWNEGK 222

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785605|gb|EFZ12260.1| hypothetical protein SINV_06827 [Solenopsis invicta]

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 104/201 (51%), Positives = 125/201 (62%), Gaps = 53/201 (26%)

Query: 10  SLCVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARF------FVIKSNNSENVD 63
           S   E K+ARS E       K T ++YDY TK+NYLFRDARF      F+IKSNN+ENV 
Sbjct: 81  SSSPEPKRARSKE------SKGTTKSYDYTTKLNYLFRDARFDEDNKFFIIKSNNAENVT 134

Query: 64  IAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLN 123
           ++K++                                         GVWSTLPQNE  LN
Sbjct: 135 LSKAK-----------------------------------------GVWSTLPQNEANLN 153

Query: 124 QAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWV 183
           QAYRESRNVLL+FSV+ESGKF+GFARL++E+     PV WVLPPGLS K L GVFK+DW+
Sbjct: 154 QAYRESRNVLLVFSVKESGKFAGFARLSTESRRDAGPVSWVLPPGLSAKALGGVFKVDWI 213

Query: 184 SRKELPFTSTLHLYNSWNEGE 204
            RKELPFT+TLHLYN WN+G+
Sbjct: 214 CRKELPFTATLHLYNPWNDGK 234

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
RGD|621706	738	Ythdc1 "YTH domain containing	0.635	0.181	0.558	2.5e-36
ZFIN|ZDB-GENE-041114-114	679	ythdc1 "YTH domain containing	0.687	0.213	0.544	7.1e-35
UNIPROTKB|Q96MU7	727	YTHDC1 "YTH domain-containing	0.635	0.184	0.558	4.2e-34
FB|FBgn0027616	721	YT521-B "YT521-B" [Drosophila	0.582	0.170	0.552	9.9e-32
UNIPROTKB|E2QZR7	1376	YTHDC2 "Uncharacterized protei	0.417	0.063	0.473	2.6e-17
UNIPROTKB|F1NS70	1339	YTHDC2 "Uncharacterized protei	0.417	0.065	0.494	4.2e-17
UNIPROTKB|F1RLG0	1151	YTHDC2 "Uncharacterized protei	0.417	0.076	0.463	1.9e-16
UNIPROTKB|F1MNU7	1429	YTHDC2 "Uncharacterized protei	0.417	0.061	0.463	2.5e-16
MGI|MGI:2448561	1445	Ythdc2 "YTH domain containing	0.417	0.060	0.463	2.6e-16
UNIPROTKB|Q9H6S0	1430	YTHDC2 "Probable ATP-dependent	0.417	0.061	0.463	3.2e-16

RGD|621706 Ythdc1 "YTH domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 379 (138.5 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
 Identities = 76/136 (55%), Positives = 95/136 (69%)

Query:    67 SQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAY 126
             S  V +       KL    +++R   LI SN + +  L  K  GVWSTLP NE+KLN A+
Sbjct:   337 SSSVRAVRKDQTSKLKSVLQDAR-FFLIKSNNHENVSLA-KAKGVWSTLPVNEKKLNLAF 394

Query:   127 RESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRK 186
             R +R+V+LIFSVRESGKF GFARL+SE+ HG SP+ WVLP G+S K+L GVFKIDW+ R+
Sbjct:   395 RSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRR 454

Query:   187 ELPFTSTLHLYNSWNE 202
             ELPFT + HL N WNE
Sbjct:   455 ELPFTKSAHLTNPWNE 470

GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=IDA

GO:0016604 "nuclear body" evidence=IDA

ZFIN|ZDB-GENE-041114-114 ythdc1 "YTH domain containing 1" [Danio rerio (taxid:7955)]

 Score = 384 (140.2 bits), Expect = 7.1e-35, P = 7.1e-35
 Identities = 80/147 (54%), Positives = 98/147 (66%)

Query:    56 SNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTL 115
             ++ SE      S  V         KL    RE+R   LI SN + +  L  K  GVWSTL
Sbjct:   267 ASGSEKKHEKLSSSVRDVRKDRINKLKHILREAR-FFLIKSNNHENVSLA-KAKGVWSTL 324

Query:   116 PQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLN 175
             P NE+KLN A+R +R+V+LIFSVRESGKF GFARL+SE+ HG SP+ WVLP G++ K+L 
Sbjct:   325 PVNEKKLNAAFRAARSVVLIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMNAKMLG 384

Query:   176 GVFKIDWVSRKELPFTSTLHLYNSWNE 202
             GVFKIDW+ R+ELPFT T HL N WNE
Sbjct:   385 GVFKIDWICRRELPFTKTAHLANPWNE 411

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q96MU7 YTHDC1 "YTH domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 378 (138.1 bits), Expect = 4.2e-34, P = 4.2e-34
 Identities = 76/136 (55%), Positives = 95/136 (69%)

Query:    67 SQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAY 126
             S  V +       KL    +++R   LI SN + +  L  K  GVWSTLP NE+KLN A+
Sbjct:   334 SSSVRAVRKDQTSKLKYVLQDAR-FFLIKSNNHENVSLA-KAKGVWSTLPVNEKKLNLAF 391

Query:   127 RESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRK 186
             R +R+V+LIFSVRESGKF GFARL+SE+ HG SP+ WVLP G+S K+L GVFKIDW+ R+
Sbjct:   392 RSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRR 451

Query:   187 ELPFTSTLHLYNSWNE 202
             ELPFT + HL N WNE
Sbjct:   452 ELPFTKSAHLTNPWNE 467

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

FB|FBgn0027616 YT521-B "YT521-B" [Drosophila melanogaster (taxid:7227)]

 Score = 356 (130.4 bits), Expect = 9.9e-32, P = 9.9e-32
 Identities = 69/125 (55%), Positives = 93/125 (74%)

Query:    80 KLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVR 139
             KLN  +R++R   LI SN   + +L+ K   VW+TLPQN+  LNQA++E+RNVLLIFSV 
Sbjct:   246 KLNYLFRDTR-FFLIKSNNSDNVQLS-KNKSVWATLPQNDANLNQAFKEARNVLLIFSVN 303

Query:   140 ESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNS 199
             ESGKF+GFAR+A+ +   +  V WVLPP +S K L GV ++DW+ RKEL F +TLHL+N+
Sbjct:   304 ESGKFAGFARMAAPSRRDIPQVAWVLPPSISPKALGGVIELDWICRKELSFNATLHLHNT 363

Query:   200 WNEGE 204
             WNEG+
Sbjct:   364 WNEGK 368

GO:0016604 "nuclear body" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0016070 "RNA metabolic process" evidence=ISS

UNIPROTKB|E2QZR7 YTHDC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 218 (81.8 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
 Identities = 45/95 (47%), Positives = 61/95 (64%)

Query:   110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
             G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R++SE     S   W    G 
Sbjct:  1254 GIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQ-DW----GS 1308

Query:   170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE 204
             +G  L GVFK++WV ++ LPF    HL N WN+ +
Sbjct:  1309 AG--LGGVFKVEWVRKESLPFQFAHHLLNPWNDNK 1341

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1NS70 YTHDC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 224 (83.9 bits), Expect = 4.2e-17, P = 4.2e-17
 Identities = 47/95 (49%), Positives = 62/95 (65%)

Query:   110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
             G+WST P NEQKLN+A+ ES  V LIFSV+ SG F GFAR++SE     S   W    G 
Sbjct:  1215 GIWSTTPSNEQKLNRAFWESSLVYLIFSVQGSGHFQGFARMSSEIGCEQSQC-W----GS 1269

Query:   170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE 204
             +G  L GVFK++W+ ++ +PF  T HL N WN+ +
Sbjct:  1270 TG--LGGVFKVEWIRKESIPFQFTHHLLNPWNDNK 1302

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1RLG0 YTHDC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 217 (81.4 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 44/95 (46%), Positives = 61/95 (64%)

Query:   110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
             G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R++SE     S   W    G 
Sbjct:  1029 GIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQ-DW----GS 1083

Query:   170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE 204
             +G  L GVFK++W+ ++ LPF    HL N WN+ +
Sbjct:  1084 AG--LGGVFKVEWIRKESLPFQFAHHLLNPWNDNK 1116

GO:0005524 "ATP binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MNU7 YTHDC2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 217 (81.4 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 44/95 (46%), Positives = 61/95 (64%)

Query:   110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
             G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R++SE     S   W    G 
Sbjct:  1307 GIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQ-DW----GS 1361

Query:   170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE 204
             +G  L GVFK++W+ ++ LPF    HL N WN+ +
Sbjct:  1362 AG--LGGVFKVEWIRKESLPFQFAHHLLNPWNDNK 1394

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:2448561 Ythdc2 "YTH domain containing 2" [Mus musculus (taxid:10090)]

 Score = 217 (81.4 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 44/95 (46%), Positives = 61/95 (64%)

Query:   110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
             G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R++SE     S   W    G 
Sbjct:  1323 GIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQ-DW----GS 1377

Query:   170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE 204
             +G  L GVFK++W+ ++ LPF    HL N WN+ +
Sbjct:  1378 AG--LGGVFKVEWIRKESLPFQFAHHLLNPWNDNK 1410

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q9H6S0 YTHDC2 "Probable ATP-dependent RNA helicase YTHDC2" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 3.2e-16, P = 3.2e-16
 Identities = 44/95 (46%), Positives = 61/95 (64%)

Query:   110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
             G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R++SE     S   W    G 
Sbjct:  1308 GIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQ-DW----GS 1362

Query:   170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE 204
             +G  L GVFK++W+ ++ LPF    HL N WN+ +
Sbjct:  1363 AG--LGGVFKVEWIRKESLPFQFAHHLLNPWNDNK 1395

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	211
pfam04146	135	pfam04146, YTH, YT521-B-like domain	2e-32

>gnl|CDD|217926 pfam04146, YTH, YT521-B-like domain

 Score =  113 bits (286), Expect = 2e-32
 Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 45/154 (29%)

Query: 50  RFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVY 109
           RFF+IKS N +NV ++                                           Y
Sbjct: 1   RFFIIKSYNEDNVHLSIK-----------------------------------------Y 19

Query: 110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
           GVW++   N +KLN+A++E+  V LIFSV +SGKF G+AR+ S  D   +          
Sbjct: 20  GVWASTSHNNKKLNKAFKEAEPVYLIFSVNKSGKFCGYARMTSPIDFDSTANSQ----DS 75

Query: 170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEG 203
           S +   G FK++W+S K+LPF    HL N  NE 
Sbjct: 76  SSQKWGGPFKVEWLSVKDLPFHRLRHLKNPNNEN 109

A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
PF04146	140	YTH: YT521-B-like domain; InterPro: IPR007275 A pr	100.0
KOG1901|consensus	487		100.0
KOG1902|consensus	441		100.0
PRK00809	144	hypothetical protein; Provisional	96.36
KOG1901|consensus	487		95.3
PF01878	143	EVE: EVE domain; InterPro: IPR002740 The EVE domai	87.34

>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []

Probab=100.00  E-value=2.4e-44  Score=291.55  Aligned_cols=118  Identities=44%  Similarity=0.752  Sum_probs=94.0

Q ss_pred             cceEEEEecCChhhHHHHHHhCccccCchhHHHHHHHHHhccceEEEEecccccccccceeccccccCccchHHHHHHHh
Q psy8691          48 DARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYR  127 (211)
Q Consensus        48 ~~rfFiIKS~~~~ni~~S~~~g~W~st~~~n~~L~~ay~~~~~~~~ifs~~~~~~~l~~i~~~vWaT~~~Ne~~L~~AF~  127 (211)
                      ++|||||||++++||++|+++|+|+|+++                                         |+++|++||+
T Consensus         1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~-----------------------------------------~~~~L~~Af~   39 (140)
T PF04146_consen    1 NARFFIIKSFNEENIHLSIKYGVWATQPK-----------------------------------------NEKKLNEAFK   39 (140)
T ss_dssp             --EEEEEEESSCHHHHHHHHCTEEE--CC-----------------------------------------CHHHHHHHHH
T ss_pred             CcEEEEEEECCHHHHHHHHhCCEEccccc-----------------------------------------chHHHHHHHH
Confidence            48999999999999999999988888887                                         7777777777


Q ss_pred             cCCcEEEEEEECCCCceeEEEEeecCCCCCCCCccccCCCCCCCCccCCceeEEEEEeecCCcccccccccccCCCcccc
Q psy8691         128 ESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGEWYN  207 (211)
Q Consensus       128 ~~~~V~LiFSVN~Sg~FqGyArM~S~~~~~~~~~~W~~~~g~~~~~~~g~F~I~Wl~~~dLPf~~~~HL~Np~NenkPV~  207 (211)
                      ++++||||||||+||+|||||+|+|+++.+.+...|...  ....+|+|+|+|+||++++|||+.++||+||+|+|+||+
T Consensus        40 ~~~~V~L~FSvn~S~~F~G~A~M~s~~~~~~~~~~w~~~--~~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~  117 (140)
T PF04146_consen   40 ESRNVYLFFSVNGSGHFQGYARMTSPIDPDSPKPFWQQD--SSSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVK  117 (140)
T ss_dssp             HSS-EEEEEEETTTSEEEEEEEEECECCSSS------SS---SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETT
T ss_pred             hCCCEEEEEeecCcceEEEEEEEccCCCCcccCcccccc--ccccccCCceEEEEEECCcCChHHhcccccccCCCcEEE
Confidence            789999999999999999999999999999888899532  235789999999999999999999999999999999998


Q ss_pred             c
Q psy8691         208 S  208 (211)
Q Consensus       208 ~  208 (211)
                      .
T Consensus       118 ~  118 (140)
T PF04146_consen  118 I  118 (140)
T ss_dssp             S
T ss_pred             E
Confidence            5

It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.

>KOG1901|consensus

Probab=100.00  E-value=2.2e-42  Score=326.15  Aligned_cols=150  Identities=28%  Similarity=0.474  Sum_probs=136.0

Q ss_pred             hhhhcccccccccCCCCCCccCccchhccccCCCcceEEEEecCChhhHHHHHHhCccccCchhHHHHHHHHHhccceEE
Q psy8691          14 EVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLL   93 (211)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rfFiIKS~~~~ni~~S~~~g~W~st~~~n~~L~~ay~~~~~~~~   93 (211)
                      +...+...+.....+++.+|+..+|.++    ..++|||||||++|||||+|+||+|||||.+||+|||+|||+++.+  
T Consensus       268 ~~~~~s~~~~~~~~~~~~~yn~~~f~~~----~~nAkfFVIKSySEDdVHkSIKY~vWsST~~GNKkLdaAYreak~~--  341 (487)
T KOG1901|consen  268 EAGSASAPESNESVKRRDRYNPPDFLTD----YSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNGNKKLDAAYREAKKK--  341 (487)
T ss_pred             hccccccccccccccChhhcCccccccc----cccceEEEEeccChhhhhhhcccceeecccCCchhhHHHHHHhhhc--
Confidence            3334444444457889999999999988    6799999999999999999999999999999999999999998731  


Q ss_pred             EEecccccccccceeccccccCccchHHHHHHHhcCCcEEEEEEECCCCceeEEEEeecCCCCCCCCccccCCCCCCCCc
Q psy8691          94 IFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKV  173 (211)
Q Consensus        94 ifs~~~~~~~l~~i~~~vWaT~~~Ne~~L~~AF~~~~~V~LiFSVN~Sg~FqGyArM~S~~~~~~~~~~W~~~~g~~~~~  173 (211)
                                                       ...++|+||||||.||+|||+|+|+++++.+....+|+      +.+
T Consensus       342 ---------------------------------~~~cPvfLfFSVNaSGqFCGvAEMvgPVdfn~~~~~Wq------QDK  382 (487)
T KOG1901|consen  342 ---------------------------------SGKCPVFLFFSVNASGQFCGVAEMVGPVDFNKDMEYWQ------QDK  382 (487)
T ss_pred             ---------------------------------cCCCCceEEEEEcCCccccceeeeccceecccccchhh------hcc
Confidence                                             35799999999999999999999999999999999997      589


Q ss_pred             cCCceeEEEEEeecCCcccccccccccCCCccccc
Q psy8691         174 LNGVFKIDWVSRKELPFTSTLHLYNSWNEGEWYNS  208 (211)
Q Consensus       174 ~~g~F~I~Wl~~~dLPf~~~~HL~Np~NenkPV~~  208 (211)
                      |.|.|.|+|+.|+|||+..++||+.+.|||||||+
T Consensus       383 W~G~FpVKWhiVKDVPNs~lrHI~LeNNeNKPVTn  417 (487)
T KOG1901|consen  383 WSGSFPVKWHIVKDVPNSQLRHIILENNENKPVTN  417 (487)
T ss_pred             cceecceeeEEEeeCCccceeEEEeecCCCCCccc
Confidence            99999999999999999999999999999999996

>KOG1902|consensus

Probab=100.00  E-value=9.3e-41  Score=303.89  Aligned_cols=125  Identities=57%  Similarity=1.035  Sum_probs=113.7

Q ss_pred             ccccCCCcceEEEEecCChhhHHHHHHhCccccCchhHHHHHHHHHhccceEEEEecccccccccceeccccccCccchH
Q psy8691          41 KINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQ  120 (211)
Q Consensus        41 ~~~~~~~~~rfFiIKS~~~~ni~~S~~~g~W~st~~~n~~L~~ay~~~~~~~~ifs~~~~~~~l~~i~~~vWaT~~~Ne~  120 (211)
                      +......++|||||||.|.+||++|++.|||+||+.                                         ||+
T Consensus        64 ~ss~~~~~~rYFIiKS~N~eN~elSvqkGiWaTq~s-----------------------------------------NE~  102 (441)
T KOG1902|consen   64 KLKYVLQDARYFIIKSNNHENVELSVQKGVWSTQPS-----------------------------------------NEK  102 (441)
T ss_pred             cccccCCceEEEEEecCCccceeeehhcceeccccc-----------------------------------------cHH
Confidence            344566789999999999999999998766555555                                         999


Q ss_pred             HHHHHHhcCCcEEEEEEECCCCceeEEEEeecCCCCCCCCccccCCCCCCCCccCCceeEEEEEeecCCccccccccccc
Q psy8691         121 KLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSW  200 (211)
Q Consensus       121 ~L~~AF~~~~~V~LiFSVN~Sg~FqGyArM~S~~~~~~~~~~W~~~~g~~~~~~~g~F~I~Wl~~~dLPf~~~~HL~Np~  200 (211)
                      +|+.||.++..||||||||+||||||||+|+|+++....-..|..+.|++ +.||+.|+|+||++++|||+++.||+|||
T Consensus       103 kLn~AF~~s~~ViLIFSVn~SghFQG~ArMsS~IG~~~~q~~W~~~~G~~-a~~G~~FkVkWiRl~eLpFqkt~hL~NP~  181 (441)
T KOG1902|consen  103 KLNLAFRSSRSVILIFSVNESGHFQGFARMSSEIGHGGSQIHWVLPAGMS-AMLGGVFKVKWIRLRELPFQKTAHLTNPW  181 (441)
T ss_pred             HHHHHHhhcCcEEEEEEecccccchhhhhhcchhccCCCCccccccCCcc-cccCceeeEeEEeeccccchhhhhcCCcc
Confidence            99999999999999999999999999999999999988878999887764 68999999999999999999999999999


Q ss_pred             CCCcccc
Q psy8691         201 NEGEWYN  207 (211)
Q Consensus       201 NenkPV~  207 (211)
                      ||||||.
T Consensus       182 NdnkpVK  188 (441)
T KOG1902|consen  182 NENKPVK  188 (441)
T ss_pred             cccCcee
Confidence            9999995

>PRK00809 hypothetical protein; Provisional

Probab=96.36  E-value=0.035  Score=45.73  Aligned_cols=99  Identities=18%  Similarity=0.297  Sum_probs=69.0

Q ss_pred             eEEEEecCChhhHHHHHHhCccccCchhHHHHHHHHHhccceEEEEecccccccccceeccccccCccchHHHHHHHhcC
Q psy8691          50 RFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRES  129 (211)
Q Consensus        50 rfFiIKS~~~~ni~~S~~~g~W~st~~~n~~L~~ay~~~~~~~~ifs~~~~~~~l~~i~~~vWaT~~~Ne~~L~~AF~~~  129 (211)
                      +|.|+=+ ++||+....++|+|-.....                                         -..|.+  -+.
T Consensus         2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~-----------------------------------------rn~lr~--Mk~   37 (144)
T PRK00809          2 TYWLCIT-NEDNWEVIKDKNVWGVPERY-----------------------------------------KNTIEK--VKP   37 (144)
T ss_pred             ceEEEec-CHHHHHHHHhCCEeecchhh-----------------------------------------hhHHhh--CCC
Confidence            5777766 89999999999998875541                                         111222  235


Q ss_pred             CcEEEEEEEC------CCCceeEEEEeecCCCCCCCCccccCCCCCCCCccCCceeEEEEEeec--CCcccc
Q psy8691         130 RNVLLIFSVR------ESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKE--LPFTST  193 (211)
Q Consensus       130 ~~V~LiFSVN------~Sg~FqGyArM~S~~~~~~~~~~W~~~~g~~~~~~~g~F~I~Wl~~~d--LPf~~~  193 (211)
                      +..+|||+-+      .-+.|-|.|++++..-++ ++..|..+..+....+--..+|+++...+  +|.+.+
T Consensus        38 GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y~D-~t~~~p~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L  108 (144)
T PRK00809         38 GDKLIIYVSQEYGAERLPGKIVGIYEVVSEWYED-STPIFPAEPVRPKEIYPYRVKLKPVKIFEEPIDFKPL  108 (144)
T ss_pred             CCEEEEEECCccCCCCCCceEEEEEEEecCcccC-CccCCCccccCCCCCceEEEEEEEeeecCCcccHHHH
Confidence            7778888887      578999999999987544 33556443333344455678899998888  887766

>KOG1901|consensus

Probab=95.30  E-value=0.01  Score=57.69  Aligned_cols=96  Identities=26%  Similarity=0.379  Sum_probs=63.1

Q ss_pred             ceEEEEecccccccccceeccccccCccchHHHHHHHhcCCcEEEEEEECCCCc---eeEEEEeecCCCCC----CCCcc
Q psy8691          90 DVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGK---FSGFARLASEADHG----VSPVK  162 (211)
Q Consensus        90 ~~~~ifs~~~~~~~l~~i~~~vWaT~~~Ne~~L~~AF~~~~~V~LiFSVN~Sg~---FqGyArM~S~~~~~----~~~~~  162 (211)
                      +++||++++..++.=..|+|+||+..++-+++|+.||++...        +++.   |.=|-+=.|.--++    ..+..
T Consensus       299 AkfFVIKSySEDdVHkSIKY~vWsST~~GNKkLdaAYreak~--------~~~~cPvfLfFSVNaSGqFCGvAEMvgPVd  370 (487)
T KOG1901|consen  299 AKFFVIKSYSEDDVHKSIKYNVWSSTLNGNKKLDAAYREAKK--------KSGKCPVFLFFSVNASGQFCGVAEMVGPVD  370 (487)
T ss_pred             ceEEEEeccChhhhhhhcccceeecccCCchhhHHHHHHhhh--------ccCCCCceEEEEEcCCccccceeeecccee
Confidence            589999999998888899999999999999999999999776        2221   11111111100000    01122


Q ss_pred             ccCCCCCCCCccCCceeEEEEEeecCCccccccccccc
Q psy8691         163 WVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSW  200 (211)
Q Consensus       163 W~~~~g~~~~~~~g~F~I~Wl~~~dLPf~~~~HL~Np~  200 (211)
                      ...    +..-|.   +=+|.-.-.|-+..++|+-|..
T Consensus       371 fn~----~~~~Wq---QDKW~G~FpVKWhiVKDVPNs~  401 (487)
T KOG1901|consen  371 FNK----DMEYWQ---QDKWSGSFPVKWHIVKDVPNSQ  401 (487)
T ss_pred             ccc----ccchhh---hcccceecceeeEEEeeCCccc
Confidence            221    123444   5589888889999999987764

>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily

Probab=87.34  E-value=1.3  Score=35.23  Aligned_cols=67  Identities=10%  Similarity=0.103  Sum_probs=35.5

Q ss_pred             HHhcCCcEEEEEEEC-CCCceeEEEEeecCCCCCCCCccccCCCCCCCCc--cCCceeEEEEEeec--CCcccc
Q psy8691         125 AYRESRNVLLIFSVR-ESGKFSGFARLASEADHGVSPVKWVLPPGLSGKV--LNGVFKIDWVSRKE--LPFTST  193 (211)
Q Consensus       125 AF~~~~~V~LiFSVN-~Sg~FqGyArM~S~~~~~~~~~~W~~~~g~~~~~--~~g~F~I~Wl~~~d--LPf~~~  193 (211)
                      ..+. +.-+|||.-+ +.+.|.|.|+.++..-.+.. ..+..+...+.+.  .....+|+++..-+  |+...+
T Consensus        39 ~mk~-GD~vifY~s~~~~~~ivai~~V~~~~~~d~~-~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~L  110 (143)
T PF01878_consen   39 RMKP-GDKVIFYHSGCKERGIVAIGEVVSEPYPDPT-AFDPDSPYYDPKSNPKPYRVDVEYVKIFEKPIPLKEL  110 (143)
T ss_dssp             C--T-T-EEEEEETSSSS-EEEEEEEEEEEEEE-GG-GTSTTSTTBTTTSCSSSEEEEEEEEEEEEEEEEHHHH
T ss_pred             cCCC-CCEEEEEEcCCCCCEEEEEEEEeccccCCCc-cccccccCcCCccCCCeeEEEEEEEEecCCCcCHHHH
Confidence            3344 4555567666 67899999999998643322 2122111112222  45677888887555  443555

The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
2yud_A	180	Solution Structure Of The Yth Domain In Yth Domain-		4e-42
2yu6_A	141	Solution Structure Of The Yth Domain In Yth Domain-		3e-16

>pdb|2YUD|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 1 (Putative Splicing Factor Yt521) Length = 180

Iteration: 1
 Score =  167 bits (422), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 83/166 (50%), Positives = 104/166 (62%), Gaps = 41/166 (24%)
Query: 37  DYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFS 96
           D  +K+ Y+ +DARFF+IKSNN ENV +AK++G                           
Sbjct: 14  DQTSKLKYVLQDARFFLIKSNNHENVSLAKAKG--------------------------- 46
Query: 97  NYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
                         VWSTLP NE+KLN A+R +R+V+LIFSVRESGKF GFARL+SE+ H
Sbjct: 47  --------------VWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHH 92
Query: 157 GVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
           G SP+ WVLP G+S K+L GVFKIDW+ R+ELPFT + HL N WNE
Sbjct: 93  GGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 138

>pdb|2YU6|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 2 Length = 141

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 7/93 (7%)
Query: 110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
           G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R++SE     S   W    G 
Sbjct: 28  GIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQ-DW----GS 82
Query: 170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
           +G  L GVFK++W+ ++ LPF    HL N WN+
Sbjct: 83  AG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
2yud_A	180	YTH domain-containing protein 1; structure genomic	3e-35
2yu6_A	141	YTH domain-containing protein 2; structural genomi	3e-29
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 180

 Score =  121 bits (305), Expect = 3e-35
 Identities = 83/176 (47%), Positives = 103/176 (58%), Gaps = 41/176 (23%)

Query: 28  PEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRE 87
                    D  +K+ Y+ +DARFF+IKSNN ENV +AK+                    
Sbjct: 5   SSGVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSLAKA-------------------- 44

Query: 88  SRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGF 147
                                 GVWSTLP NE+KLN A+R +R+V+LIFSVRESGKF GF
Sbjct: 45  ---------------------KGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGF 83

Query: 148 ARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEG 203
           ARL+SE+ HG SP+ WVLP G+S K+L GVFKIDW+ R+ELPFT + HL N WNE 
Sbjct: 84  ARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEH 139

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 141

 Score =  105 bits (263), Expect = 3e-29
 Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 48/156 (30%)

Query: 48  DARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFK 107
             R+F++KS+N  N++I++                                         
Sbjct: 7   GVRYFIMKSSNLRNLEISQQ---------------------------------------- 26

Query: 108 VYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPP 167
             G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R++SE     S        
Sbjct: 27  -KGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGL 85

Query: 168 GLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEG 203
           G       GVFK++W+ ++ LPF    HL N WN+ 
Sbjct: 86  G-------GVFKVEWIRKESLPFQFAHHLLNPWNDN 114

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 34/112 (30%)

Query: 21  AEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQK 80
              +     +P++ T  YI + + L+ D + F  K N            V     Q   K
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KYN------------VSR--LQPYLK 139

Query: 81  LNQAYRESRD-----------------VLLIFSNYYVSNELNFKVYGVWSTL 115
           L QA  E R                   L +  +Y V  +++FK++  W  L
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNL 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
2yud_A	180	YTH domain-containing protein 1; structure genomic	100.0
2yu6_A	141	YTH domain-containing protein 2; structural genomi	100.0
2hd9_A	145	UPF0310 protein PH1033; pyrococcus horikoshii OT3,	95.8
2p5d_A	147	UPF0310 protein mjecl36; NPPSFA, national project	93.69
2yu6_A	141	YTH domain-containing protein 2; structural genomi	83.29
2yud_A	180	YTH domain-containing protein 1; structure genomic	80.76

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=5.1e-48  Score=324.86  Aligned_cols=136  Identities=61%  Similarity=1.053  Sum_probs=119.3

Q ss_pred             cCCCCCCccCccchhccccCCCcceEEEEecCChhhHHHHHHhCccccCchhHHHHHHHHHhccceEEEEeccccccccc
Q psy8691          26 ARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELN  105 (211)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~rfFiIKS~~~~ni~~S~~~g~W~st~~~n~~L~~ay~~~~~~~~ifs~~~~~~~l~  105 (211)
                      +...++++      .+++++++++|||||||++++||++|++||+|+||++||++|++|                     
T Consensus         9 ~~~~~~~~------~~~~~~~~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~A---------------------   61 (180)
T 2yud_A            9 RAVRKDQT------SKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLA---------------------   61 (180)
T ss_dssp             CCCCCCSS------HHHHHHTTTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHH---------------------
T ss_pred             hhcchhhc------cccccccCceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHH---------------------
Confidence            33455665      455666789999999999999999999999999999955555555                     


Q ss_pred             ceeccccccCccchHHHHHHHhcCCcEEEEEEECCCCceeEEEEeecCCCCCCCCccccCCCCCCCCccCCceeEEEEEe
Q psy8691         106 FKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSR  185 (211)
Q Consensus       106 ~i~~~vWaT~~~Ne~~L~~AF~~~~~V~LiFSVN~Sg~FqGyArM~S~~~~~~~~~~W~~~~g~~~~~~~g~F~I~Wl~~  185 (211)
                                          |+++++||||||||+||+|||||+|+|+++.+.++..|+.+.|+++++|+|.|+|+||++
T Consensus        62 --------------------f~~~~~V~L~FSVn~Sg~F~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~  121 (180)
T 2yud_A           62 --------------------FRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICR  121 (180)
T ss_dssp             --------------------HHHSSCEEEEEEETTTSEEEEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEEC
T ss_pred             --------------------HhhCCeEEEEEEeCCCCcEEEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEe
Confidence                                555678999999999999999999999999988889999887777889999999999999


Q ss_pred             ecCCcccccccccccCCCccccc
Q psy8691         186 KELPFTSTLHLYNSWNEGEWYNS  208 (211)
Q Consensus       186 ~dLPf~~~~HL~Np~NenkPV~~  208 (211)
                      ++|||+.++||+||+|+||||+.
T Consensus       122 ~dvPf~~~~hl~n~~NenkpV~~  144 (180)
T 2yud_A          122 RELPFTKSAHLTNPWNEHKPVKI  144 (180)
T ss_dssp             SCEEHHHHTTCCBTTTTSBCTTS
T ss_pred             ecCCchhhhhccccccCCCeeee
Confidence            99999999999999999999986

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=4.4e-46  Score=302.29  Aligned_cols=116  Identities=41%  Similarity=0.796  Sum_probs=104.4

Q ss_pred             CCCcceEEEEecCChhhHHHHHHhCccccCchhHHHHHHHHHhccceEEEEecccccccccceeccccccCccchHHHHH
Q psy8691          45 LFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQ  124 (211)
Q Consensus        45 ~~~~~rfFiIKS~~~~ni~~S~~~g~W~st~~~n~~L~~ay~~~~~~~~ifs~~~~~~~l~~i~~~vWaT~~~Ne~~L~~  124 (211)
                      ...++|||||||++++|||+|++||+|+||++                                         |+++|++
T Consensus         4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~-----------------------------------------~~~~L~~   42 (141)
T 2yu6_A            4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPS-----------------------------------------NERKLNR   42 (141)
T ss_dssp             CCCCCEEEEEEESSSHHHHHHHHTCEEECCTT-----------------------------------------SHHHHHH
T ss_pred             CCCCcEEEEEEeCCHHHHHHHHHcCEeeccCc-----------------------------------------cHHHHHH
Confidence            46789999999999999999999999999988                                         4555555


Q ss_pred             HHhcCCcEEEEEEECCCCceeEEEEeecCCCCCCCCccccCCCCCCCCccCCceeEEEEEeecCCcccccccccccCCCc
Q psy8691         125 AYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE  204 (211)
Q Consensus       125 AF~~~~~V~LiFSVN~Sg~FqGyArM~S~~~~~~~~~~W~~~~g~~~~~~~g~F~I~Wl~~~dLPf~~~~HL~Np~Nenk  204 (211)
                      ||+++++||||||||+||+|||||+|+|+++. .++..|+      +.+|+|.|+|+||++++|||+.++||+||+|+||
T Consensus        43 Af~~~~~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~~~~W~------~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk  115 (141)
T 2yu6_A           43 AFWESSIVYLVFSVQGSGHFQGFSRMSSEIGR-EKSQDWG------SAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNK  115 (141)
T ss_dssp             HHHHSSCEEEEEEESSSSEECEEEEECSCSSS-CCCCCCS------CSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTE
T ss_pred             HHhcCCcEEEEEEECCCCeEEEEEEEcccCCC-CCCcccc------ccccCCcEEEEEEEeecCChHHhhhcccccCCCC
Confidence            55557899999999999999999999999998 5668895      4789999999999999999999999999999999


Q ss_pred             cccc
Q psy8691         205 WYNS  208 (211)
Q Consensus       205 PV~~  208 (211)
                      ||+.
T Consensus       116 ~V~~  119 (141)
T 2yu6_A          116 KVQI  119 (141)
T ss_dssp             ETTC
T ss_pred             eEEe
Confidence            9986

>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A

Probab=95.80  E-value=0.042  Score=43.78  Aligned_cols=100  Identities=20%  Similarity=0.310  Sum_probs=65.0

Q ss_pred             eEEEEecCChhhHHHHHHhCccccCchhHHHHHHHHHhccceEEEEecccccccccceeccccccCccchHHHHHHHhcC
Q psy8691          50 RFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRES  129 (211)
Q Consensus        50 rfFiIKS~~~~ni~~S~~~g~W~st~~~n~~L~~ay~~~~~~~~ifs~~~~~~~l~~i~~~vWaT~~~Ne~~L~~AF~~~  129 (211)
                      +|-++|| +.+++...++.|+|-- ..+.+                                      |   ..++- +.
T Consensus         2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~ar--------------------------------------n---~lr~m-k~   37 (145)
T 2hd9_A            2 TYWICIT-NRENWEVIKRHNVWGV-PKKHK--------------------------------------N---TLSRV-KP   37 (145)
T ss_dssp             CEEEEEE-CHHHHHHHHHHCEEEE-CGGGH--------------------------------------H---HHTTC-CT
T ss_pred             ceEEEeC-CHHHHHHHHHcCcccc-CHHHH--------------------------------------H---HHHhC-CC
Confidence            5899999 7999999999998855 44222                                      1   11222 34


Q ss_pred             CcEEEEEEECCC--------CceeEEEEeecCCCCCCCCccccCCCCCCCCccCCceeEEEEEeecCCcccccc
Q psy8691         130 RNVLLIFSVRES--------GKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLH  195 (211)
Q Consensus       130 ~~V~LiFSVN~S--------g~FqGyArM~S~~~~~~~~~~W~~~~g~~~~~~~g~F~I~Wl~~~dLPf~~~~H  195 (211)
                      +.-+|||+-+..        ..|-|.|+.++.+-++. +..|..+..+ ....--..+|+++....+|+..+..
T Consensus        38 GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~D~-t~~~~~~~~~-~~~~p~rv~v~~v~~~~i~~~~l~~  109 (145)
T 2hd9_A           38 GDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVDF-SRIFKPHRGG-KETYPYRVKIKPIKIGEINFKPLIN  109 (145)
T ss_dssp             TCEEEEEECCEECTTCCEECCEEEEEEEECSCCEECC-CCCSCCTTSS-CCCCCEEEEEEEEEEEEEESGGGGG
T ss_pred             CCEEEEEEccccccCCCCCCceEEEEEEEcCCcEeCC-CccCCCcccc-cCCeeEEEeCEEEeeccCcHHHHHh
Confidence            677778887665        79999999999775543 2333322111 1122235578899999998876543

>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}

Probab=93.69  E-value=0.13  Score=40.99  Aligned_cols=101  Identities=13%  Similarity=0.257  Sum_probs=64.1

Q ss_pred             ceEEEEecCChhhHHHHHHhCccccCchhHHHHHHHHHhccceEEEEecccccccccceeccccccCccchHHHHHHHhc
Q psy8691          49 ARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRE  128 (211)
Q Consensus        49 ~rfFiIKS~~~~ni~~S~~~g~W~st~~~n~~L~~ay~~~~~~~~ifs~~~~~~~l~~i~~~vWaT~~~Ne~~L~~AF~~  128 (211)
                      -+|.|+||. .+++...++.|+|-- .++.+                                      |   +.++-+.
T Consensus         4 m~YWL~~se-~~~~~~~~~~g~wGV-n~~ar--------------------------------------n---~lr~Mk~   40 (147)
T 2p5d_A            4 MAYWLCITN-EDNWKVIKEKKIWGV-AERYK--------------------------------------N---TINKVKV   40 (147)
T ss_dssp             CCEEEEEEC-HHHHHHHHHHCEEEE-CGGGH--------------------------------------H---HHTTCCT
T ss_pred             ccceeeecC-HHHHHHHHHcCeeec-CHHHH--------------------------------------H---HHHhCCC
Confidence            479999987 777999999998844 33211                                      1   2223333


Q ss_pred             CCcEEEEEEEC------CCCceeEEEEeecCCCCCCCCccccCCCCCCCCccCCceeEEEEEe--ecCCccccc
Q psy8691         129 SRNVLLIFSVR------ESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSR--KELPFTSTL  194 (211)
Q Consensus       129 ~~~V~LiFSVN------~Sg~FqGyArM~S~~~~~~~~~~W~~~~g~~~~~~~g~F~I~Wl~~--~dLPf~~~~  194 (211)
                       +.-+|||...      +-..|-|.|+.++.+-++. +..|..++.+......-..+|+++..  ..+|+..++
T Consensus        41 -GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D~-t~~dp~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk  112 (147)
T 2p5d_A           41 -GDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKDS-SKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELI  112 (147)
T ss_dssp             -TCEEEEEECCBCSTTCBCCEEEEEEEECSCCEECC-CCCSCCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHG
T ss_pred             -CCEEEEEEecccCCCCCCCEEEEEEEEecccccCC-cccCcCccCcCCCCCceEEEEEEEeecCCccCHHHHH
Confidence             5555666333      3458999999999765442 34443332222233445889999988  888888776

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.29  E-value=0.25  Score=39.39  Aligned_cols=26  Identities=23%  Similarity=0.259  Sum_probs=23.1

Q ss_pred             cceEEEEecccccccccceecccccc
Q psy8691          89 RDVLLIFSNYYVSNELNFKVYGVWST  114 (211)
Q Consensus        89 ~~~~~ifs~~~~~~~l~~i~~~vWaT  114 (211)
                      ..+|||.+++..++.-.+++||||+|
T Consensus         7 ~~rfFIiKS~s~~ni~~S~k~gvW~t   32 (141)
T 2yu6_A            7 GVRYFIMKSSNLRNLEISQQKGIWST   32 (141)
T ss_dssp             CCEEEEEEESSSHHHHHHHHTCEEEC
T ss_pred             CcEEEEEEeCCHHHHHHHHHcCEeec
Confidence            45899999999988777999999996

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.76  E-value=0.38  Score=39.91  Aligned_cols=41  Identities=37%  Similarity=0.491  Sum_probs=34.3

Q ss_pred             HHHHHHHhccceEEEEecccccccccceeccccccCccchHHH
Q psy8691          80 KLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKL  122 (211)
Q Consensus        80 ~L~~ay~~~~~~~~ifs~~~~~~~l~~i~~~vWaT~~~Ne~~L  122 (211)
                      +|+-.++  +.+|||.+++..++.-.+++||||+|+++|+++|
T Consensus        18 ~~~~~~~--~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL   58 (180)
T 2yud_A           18 KLKYVLQ--DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKL   58 (180)
T ss_dssp             HHHHHTT--TCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHH
T ss_pred             ccccccC--ceEEEEEEeCCHHHHHHHHHcCEeecccccHHHH
Confidence            3554443  4689999999999877799999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d2hd9a1	145	Hypothetical protein PH1033 {Pyrococcus horikoshii	95.87

>d2hd9a1 b.122.1.8 (A:1-145) Hypothetical protein PH1033 {Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein PH1033
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.87  E-value=0.016  Score=44.36  Aligned_cols=96  Identities=20%  Similarity=0.287  Sum_probs=63.4

Q ss_pred             EEEEecCChhhHHHHHHhCccccCchhHHHHHHHHHhccceEEEEecccccccccceeccccccCccchHHHHHHHhcCC
Q psy8691          51 FFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESR  130 (211)
Q Consensus        51 fFiIKS~~~~ni~~S~~~g~W~st~~~n~~L~~ay~~~~~~~~ifs~~~~~~~l~~i~~~vWaT~~~Ne~~L~~AF~~~~  130 (211)
                      |+|+=+ +.||+...++.|+|.......+.|.+                                           =+.+
T Consensus         3 YWi~v~-s~e~~~~~~~~g~~~~~~~k~~~~~r-------------------------------------------ikpG   38 (145)
T d2hd9a1           3 YWICIT-NRENWEVIKRHNVWGVPKKHKNTLSR-------------------------------------------VKPG   38 (145)
T ss_dssp             EEEEEE-CHHHHHHHHHHCEEEECGGGHHHHTT-------------------------------------------CCTT
T ss_pred             eEEEeC-CHHHHHHHHhCCEEeccCCchhhHhh-------------------------------------------CCCC
Confidence            555544 58999999999999775542111111                                           1356


Q ss_pred             cEEEEEEECCC--------CceeEEEEeecCCCCCCCCccccCCCCCCCCccCCceeEEEEEeecCCccc
Q psy8691         131 NVLLIFSVRES--------GKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTS  192 (211)
Q Consensus       131 ~V~LiFSVN~S--------g~FqGyArM~S~~~~~~~~~~W~~~~g~~~~~~~g~F~I~Wl~~~dLPf~~  192 (211)
                      .-+|||+....        ++|-|.++.++.+-.+.. +.|..+ .+....+.=.++|+|+...++|++.
T Consensus        39 D~li~Y~~~~~~~~~~~~~q~f~ai~~V~~~~~~d~t-~i~~~~-~~~~~~~P~R~~v~~~~~~ev~i~~  106 (145)
T d2hd9a1          39 DKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVDFS-RIFKPH-RGGKETYPYRVKIKPIKIGEINFKP  106 (145)
T ss_dssp             CEEEEEECCEECTTCCEECCEEEEEEEECSCCEECCC-CCSCCT-TSSCCCCCEEEEEEEEEEEEEESGG
T ss_pred             CEEEEEeCccccCCCcccccEEEEEEEEeccceeccc-cccccc-ccCCceEEEEEEeEEeecccccHHH
Confidence            77788886543        479999999998765543 667432 1222233346899999999999874