Psyllid ID: psy8704

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHcccccEEEcHHHHHHHcccccccccccccHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHccccccccEcHHHHHHHHcccccccccccHHHHHHHHHHcccEcccccc
Coil and Loop (DISEMBL)
mnraemssdeaFGAVEAMSDRVciasggkkhvrlssDDLVSccrlcgfgcnggfpgmAWRYWVKNgintykpvk
Flexible Loop (DISEMBL)
MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNgintykpvk
Low Complexity Region (SEG)
MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK
Disordered region (IsUnstruct)
******************SDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTY****
Disordered Region (DISOPRED)
MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYK***
Disordered Region (DISEMBL)
**********AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK
Disordered Region (DISPRO)
****EMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKP**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	74	2.2.26 [Sep-21-2011]
P43510	379	Cathepsin B-like cysteine	yes	N/A	0.797	0.155	0.745	1e-19
P43157	342	Cathepsin B-like cysteine	N/A	N/A	0.797	0.172	0.677	7e-18
P25792	340	Cathepsin B-like cysteine	N/A	N/A	0.797	0.173	0.661	2e-16
P43233	340	Cathepsin B OS=Gallus gal	yes	N/A	0.770	0.167	0.568	6e-14
P00787	339	Cathepsin B OS=Rattus nor	yes	N/A	0.770	0.168	0.551	1e-13
P43509	344	Cathepsin B-like cysteine	no	N/A	0.918	0.197	0.507	2e-13
A1E295	335	Cathepsin B OS=Sus scrofa	yes	N/A	0.770	0.170	0.568	3e-13
P10605	339	Cathepsin B OS=Mus muscul	yes	N/A	0.770	0.168	0.551	5e-13
Q5R6D1	339	Cathepsin B OS=Pongo abel	yes	N/A	0.770	0.168	0.517	1e-12
P07858	339	Cathepsin B OS=Homo sapie	yes	N/A	0.770	0.168	0.517	1e-12

>sp|P43510|CPR6_CAEEL Cathepsin B-like cysteine proteinase 6 OS=Caenorhabditis elegans GN=cpr-6 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 50/59 (84%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
           AFGAVEAMSDR+CIAS G+  V LS+DDL+SCC+ CGFGCNGG P  AWRYWVK+GI T
Sbjct: 135 AFGAVEAMSDRICIASHGELQVTLSADDLLSCCKSCGFGCNGGDPLAAWRYWVKDGIVT 193

Caenorhabditis elegans (taxid: 6239)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp|P43157|CYSP_SCHJA Cathepsin B-like cysteine proteinase OS=Schistosoma japonicum GN=CATB PE=2 SV=1

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 47/59 (79%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
           AFGAVEAM+DR+CI SGG +   LS+ DL+SCC+ CG GC GGFPG+AW YWVK GI T
Sbjct: 120 AFGAVEAMTDRICIQSGGGQSAELSALDLISCCKDCGDGCQGGFPGVAWDYWVKRGIVT 178

Thiol protease. Has a role as a digestive enzyme.

Schistosoma japonicum (taxid: 6182)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P25792|CYSP_SCHMA Cathepsin B-like cysteine proteinase OS=Schistosoma mansoni PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 45/59 (76%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
           +FGAVEAMSDR CI SGGK++V LS+ DL++CC  CG GC GG  G AW YWVK GI T
Sbjct: 119 SFGAVEAMSDRSCIQSGGKQNVELSAVDLLTCCESCGLGCEGGILGPAWDYWVKEGIVT 177

Thiol protease. Has a role as a digestive enzyme.

Schistosoma mansoni (taxid: 6183)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P43233|CATB_CHICK Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNGI 67
           AFGAVEA+SDR+C+ +  K  V +S++DL+SCC   CG GCNGG+P  AWRYW + G+
Sbjct: 110 AFGAVEAISDRICVHTNAKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYWTERGL 167

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|P00787|CATB_RAT Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 46/58 (79%), Gaps = 1/58 (1%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNGI 67
           AFGAVEAMSDR+CI + G+ +V +S++DL++CC + CG GCNGG+P  AW +W + G+
Sbjct: 110 AFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGL 167

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|P43509|CPR5_CAEEL Cathepsin B-like cysteine proteinase 5 OS=Caenorhabditis elegans GN=cpr-5 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 3/71 (4%)

Query: 2   NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCR---LCGFGCNGGFPGMA 58
           ++++  S  AF A EA+SDR CIAS G  +  LSS+DL+SCC     CG GC GG+P  A
Sbjct: 103 DQSDCGSCWAFAAAEAISDRTCIASNGAVNTLLSSEDLLSCCTGMFSCGNGCEGGYPIQA 162

Query: 59  WRYWVKNGINT 69
           W++WVK+G+ T
Sbjct: 163 WKWWVKHGLVT 173

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|A1E295|CATB_PIG Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 45/58 (77%), Gaps = 1/58 (1%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC-RLCGFGCNGGFPGMAWRYWVKNGI 67
           AFGAVEA+SDR+CI S G+ +V +S++D+++CC   CG GCNGGFP  AW +W K G+
Sbjct: 110 AFGAVEAISDRICIRSNGRVNVEVSAEDMLTCCGDECGDGCNGGFPSGAWNFWTKKGL 167

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|P10605|CATB_MOUSE Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 45/58 (77%), Gaps = 1/58 (1%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNGI 67
           AFGAVEA+SDR CI + G+ +V +S++DL++CC + CG GCNGG+P  AW +W K G+
Sbjct: 110 AFGAVEAISDRTCIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWSFWTKKGL 167

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|Q5R6D1|CATB_PONAB Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC-RLCGFGCNGGFPGMAWRYWVKNGI 67
           AFGAVEA+SDR+CI +     V +S++DL++CC  +CG GCNGG+P  AW +W + G+
Sbjct: 110 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGL 167

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|P07858|CATB_HUMAN Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC-RLCGFGCNGGFPGMAWRYWVKNGI 67
           AFGAVEA+SDR+CI +     V +S++DL++CC  +CG GCNGG+P  AW +W + G+
Sbjct: 110 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGL 167

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
347972086	337	AGAP004533-PA [Anopheles gambiae str. PE	0.837	0.183	0.725	5e-20
312374701	335	hypothetical protein AND_15621 [Anophele	0.837	0.185	0.741	7e-20
157167366	340	cathepsin b [Aedes aegypti] gi|54289254|	0.837	0.182	0.709	5e-19
170028910	334	cathepsin L [Culex quinquefasciatus] gi|	0.837	0.185	0.693	1e-18
194895314	340	GG19486 [Drosophila erecta] gi|190649876	0.959	0.208	0.647	2e-18
341887135	398	hypothetical protein CAEBREN_13756 [Caen	0.797	0.148	0.762	2e-18
195478432	340	GE16138 [Drosophila yakuba] gi|194188039	0.837	0.182	0.709	2e-18
195352458	340	GM17589 [Drosophila sechellia] gi|194126	0.837	0.182	0.709	2e-18
18921171	340	cathepsin B1, isoform A [Drosophila mela	0.837	0.182	0.709	2e-18
125981197	338	GA10694 [Drosophila pseudoobscura pseudo	0.837	0.183	0.709	2e-18

>gi|347972086|ref|XP_313835.5| AGAP004533-PA [Anopheles gambiae str. PEST] gi|333469165|gb|EAA09183.5| AGAP004533-PA [Anopheles gambiae str. PEST]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 51/62 (82%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTY 70
           AFGAVEAMSDRVC+ASGGK H R S++DLVSCC  CGFGCNGGFPG AW YWV+ G+ + 
Sbjct: 115 AFGAVEAMSDRVCVASGGKIHFRFSAEDLVSCCHTCGFGCNGGFPGAAWSYWVRKGLVSG 174

Query: 71  KP 72
            P
Sbjct: 175 GP 176

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374701|gb|EFR22198.1| hypothetical protein AND_15621 [Anopheles darlingi]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 50/62 (80%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTY 70
           AFGAVEAMSDRVCIASGGK H R S++DLVSCC  CGFGCNGGFPG AW YWV  G+ + 
Sbjct: 113 AFGAVEAMSDRVCIASGGKIHFRFSAEDLVSCCHTCGFGCNGGFPGAAWSYWVHKGLVSG 172

Query: 71  KP 72
            P
Sbjct: 173 GP 174

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157167366|ref|XP_001653890.1| cathepsin b [Aedes aegypti] gi|54289254|gb|AAV31917.1| lysosomal cathepsin B [Aedes aegypti] gi|108874249|gb|EAT38474.1| AAEL009637-PA [Aedes aegypti]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 50/62 (80%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTY 70
           AFGAVEAMSDR+CI S GK H R+SS+DLVSCC  CGFGCNGGFPG AW YWV+ G+ + 
Sbjct: 118 AFGAVEAMSDRICIHSEGKVHFRVSSEDLVSCCHTCGFGCNGGFPGAAWSYWVRKGLVSG 177

Query: 71  KP 72
            P
Sbjct: 178 GP 179

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028910|ref|XP_001842337.1| cathepsin L [Culex quinquefasciatus] gi|167879387|gb|EDS42770.1| cathepsin L [Culex quinquefasciatus]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 50/62 (80%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTY 70
           AFGAVEAMSDR+CI S GK H R+S++DLVSCC  CGFGCNGGFPG AW YWV+ G+ + 
Sbjct: 113 AFGAVEAMSDRICIHSKGKVHFRVSAEDLVSCCHTCGFGCNGGFPGAAWSYWVRKGLVSG 172

Query: 71  KP 72
            P
Sbjct: 173 GP 174

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194895314|ref|XP_001978227.1| GG19486 [Drosophila erecta] gi|190649876|gb|EDV47154.1| GG19486 [Drosophila erecta]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 52/71 (73%)

Query: 2   NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRY 61
           ++ E  S  AFGAVEAMSDRVCI SGGK +   S+DDLVSCC  CGFGCNGGFPG AW Y
Sbjct: 108 DQGECGSCWAFGAVEAMSDRVCIHSGGKVNFHFSADDLVSCCHTCGFGCNGGFPGAAWSY 167

Query: 62  WVKNGINTYKP 72
           W + GI +  P
Sbjct: 168 WTRKGIVSGGP 178

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|341887135|gb|EGT43070.1| hypothetical protein CAEBREN_13756 [Caenorhabditis brenneri]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 50/59 (84%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
           AFGAVEAMSDR+CIAS G+  V LS+DDL+SCCR CGFGCNGG P  AWRYWVK+GI T
Sbjct: 150 AFGAVEAMSDRICIASHGELQVSLSADDLLSCCRSCGFGCNGGDPLAAWRYWVKDGIVT 208

Source: Caenorhabditis brenneri

Species: Caenorhabditis brenneri

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|195478432|ref|XP_002100515.1| GE16138 [Drosophila yakuba] gi|194188039|gb|EDX01623.1| GE16138 [Drosophila yakuba]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 48/62 (77%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTY 70
           AFGAVEAMSDRVCI SGGK +   S+DDLVSCC  CGFGCNGGFPG AW YW + GI + 
Sbjct: 117 AFGAVEAMSDRVCIHSGGKVNFHFSADDLVSCCHTCGFGCNGGFPGAAWSYWTRKGIVSG 176

Query: 71  KP 72
            P
Sbjct: 177 GP 178

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195352458|ref|XP_002042729.1| GM17589 [Drosophila sechellia] gi|194126760|gb|EDW48803.1| GM17589 [Drosophila sechellia]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 48/62 (77%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTY 70
           AFGAVEAMSDRVCI SGGK +   S+DDLVSCC  CGFGCNGGFPG AW YW + GI + 
Sbjct: 117 AFGAVEAMSDRVCIHSGGKVNFHFSADDLVSCCHTCGFGCNGGFPGAAWSYWTRKGIVSG 176

Query: 71  KP 72
            P
Sbjct: 177 GP 178

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|18921171|ref|NP_572920.1| cathepsin B1, isoform A [Drosophila melanogaster] gi|7292926|gb|AAF48317.1| cathepsin B1, isoform A [Drosophila melanogaster] gi|16767940|gb|AAL28188.1| GH06546p [Drosophila melanogaster] gi|220944992|gb|ACL85039.1| CG10992-PA [synthetic construct] gi|220954816|gb|ACL89951.1| CG10992-PA [synthetic construct]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 48/62 (77%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTY 70
           AFGAVEAMSDRVCI SGGK +   S+DDLVSCC  CGFGCNGGFPG AW YW + GI + 
Sbjct: 117 AFGAVEAMSDRVCIHSGGKVNFHFSADDLVSCCHTCGFGCNGGFPGAAWSYWTRKGIVSG 176

Query: 71  KP 72
            P
Sbjct: 177 GP 178

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125981197|ref|XP_001354605.1| GA10694 [Drosophila pseudoobscura pseudoobscura] gi|54642915|gb|EAL31659.1| GA10694 [Drosophila pseudoobscura pseudoobscura]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 49/62 (79%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTY 70
           AFGAVEAMSDRVCI S GK +  LS+DDLVSCC +CGFGCNGGFPG AW YW + GI + 
Sbjct: 116 AFGAVEAMSDRVCIHSEGKVNFHLSADDLVSCCHICGFGCNGGFPGAAWSYWTRKGIVSG 175

Query: 71  KP 72
            P
Sbjct: 176 GP 177

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
FB|FBgn0030521	340	CtsB1 "Cathepsin B1" [Drosophi	0.770	0.167	0.754	3e-21
WB|WBGene00000786	379	cpr-6 [Caenorhabditis elegans	0.797	0.155	0.745	1.5e-20
ZFIN|ZDB-GENE-070323-1	326	ctsbb "capthepsin B, b" [Danio	0.797	0.180	0.593	5.1e-17
UNIPROTKB|F1N9D8	153	CTSB "Cathepsin B" [Gallus gal	0.770	0.372	0.568	3.7e-16
ZFIN|ZDB-GENE-040426-2650	330	ctsba "cathepsin B, a" [Danio	0.797	0.178	0.576	6.3e-16
UNIPROTKB|F1N9D7	340	CTSB "Cathepsin B" [Gallus gal	0.770	0.167	0.568	7.4e-16
UNIPROTKB|P43233	340	CTSB "Cathepsin B" [Gallus gal	0.770	0.167	0.568	7.4e-16
RGD|621509	339	Ctsb "cathepsin B" [Rattus nor	0.770	0.168	0.551	1.2e-15
UNIPROTKB|Q6IN22	339	Ctsb "Cathepsin B" [Rattus nor	0.770	0.168	0.551	1.2e-15
UNIPROTKB|A1E295	335	CTSB "Cathepsin B" [Sus scrofa	0.770	0.170	0.568	1.5e-15

FB|FBgn0030521 CtsB1 "Cathepsin B1" [Drosophila melanogaster (taxid:7227)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 43/57 (75%), Positives = 46/57 (80%)

Query:    11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGI 67
             AFGAVEAMSDRVCI SGGK +   S+DDLVSCC  CGFGCNGGFPG AW YW + GI
Sbjct:   117 AFGAVEAMSDRVCIHSGGKVNFHFSADDLVSCCHTCGFGCNGGFPGAAWSYWTRKGI 173

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0048102 "autophagic cell death" evidence=IEP

GO:0006508 "proteolysis" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

WB|WBGene00000786 cpr-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 244 (91.0 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 44/59 (74%), Positives = 50/59 (84%)

Query:    11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
             AFGAVEAMSDR+CIAS G+  V LS+DDL+SCC+ CGFGCNGG P  AWRYWVK+GI T
Sbjct:   135 AFGAVEAMSDRICIASHGELQVTLSADDLLSCCKSCGFGCNGGDPLAAWRYWVKDGIVT 193

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0005764 "lysosome" evidence=IDA

ZFIN|ZDB-GENE-070323-1 ctsbb "capthepsin B, b" [Danio rerio (taxid:7955)]

 Score = 210 (79.0 bits), Expect = 5.1e-17, P = 5.1e-17
 Identities = 35/59 (59%), Positives = 47/59 (79%)

Query:    11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
             AFGAVE++SDR+CI S GK+   +S++DL+SCC  CGFGC+GGFP  AW YW ++G+ T
Sbjct:   105 AFGAVESISDRICIHSKGKQSPEISAEDLLSCCDQCGFGCSGGFPAEAWDYWRRSGLVT 163

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1N9D8 CTSB "Cathepsin B" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query:    11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNGI 67
             AFGAVEA+SDR+C+ +  K  V +S++DL+SCC   CG GCNGG+P  AWRYW + G+
Sbjct:    23 AFGAVEAISDRICVHTNAKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYWTERGL 80

GO:0006508 "proteolysis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

ZFIN|ZDB-GENE-040426-2650 ctsba "cathepsin B, a" [Danio rerio (taxid:7955)]

 Score = 201 (75.8 bits), Expect = 6.3e-16, P = 6.3e-16
 Identities = 34/59 (57%), Positives = 42/59 (71%)

Query:    11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
             AFGA EA+SDRVCI S  K  V +SS DL++CC  CG GCNGG+P  AW +W  +G+ T
Sbjct:   109 AFGAAEAISDRVCIQSNAKVSVEISSQDLLTCCDSCGMGCNGGYPSAAWDFWTTDGLVT 167

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0031101 "fin regeneration" evidence=IEP

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1N9D7 CTSB "Cathepsin B" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 7.4e-16, P = 7.4e-16
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query:    11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNGI 67
             AFGAVEA+SDR+C+ +  K  V +S++DL+SCC   CG GCNGG+P  AWRYW + G+
Sbjct:   110 AFGAVEAISDRICVHTNAKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYWTERGL 167

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

UNIPROTKB|P43233 CTSB "Cathepsin B" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 7.4e-16, P = 7.4e-16
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query:    11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNGI 67
             AFGAVEA+SDR+C+ +  K  V +S++DL+SCC   CG GCNGG+P  AWRYW + G+
Sbjct:   110 AFGAVEAISDRICVHTNAKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYWTERGL 167

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

RGD|621509 Ctsb "cathepsin B" [Rattus norvegicus (taxid:10116)]

 Score = 199 (75.1 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 32/58 (55%), Positives = 46/58 (79%)

Query:    11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNGI 67
             AFGAVEAMSDR+CI + G+ +V +S++DL++CC + CG GCNGG+P  AW +W + G+
Sbjct:   110 AFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGL 167

GO:0004175 "endopeptidase activity" evidence=IMP;IDA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA;ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO;IDA

GO:0005764 "lysosome" evidence=IEA;ISO;IDA

GO:0006508 "proteolysis" evidence=IEA;IEP;ISO;IMP;IDA;TAS

GO:0006914 "autophagy" evidence=IEP

GO:0006950 "response to stress" evidence=IEP

GO:0007283 "spermatogenesis" evidence=IEP

GO:0007519 "skeletal muscle tissue development" evidence=IEP

GO:0008233 "peptidase activity" evidence=ISO

GO:0008234 "cysteine-type peptidase activity" evidence=ISO

GO:0009611 "response to wounding" evidence=IEP

GO:0009612 "response to mechanical stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0014075 "response to amine stimulus" evidence=IEP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0030984 "kininogen binding" evidence=IPI

GO:0032403 "protein complex binding" evidence=IPI

GO:0034097 "response to cytokine stimulus" evidence=IEP

GO:0042277 "peptide binding" evidence=IDA

GO:0042383 "sarcolemma" evidence=IDA

GO:0042470 "melanosome" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043434 "response to peptide hormone stimulus" evidence=IEP

GO:0043621 "protein self-association" evidence=IDA

GO:0045471 "response to ethanol" evidence=IEP

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;IDA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:0070670 "response to interleukin-4" evidence=IEP

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA;ISO

GO:0005901 "caveola" evidence=IDA

UNIPROTKB|Q6IN22 Ctsb "Cathepsin B" [Rattus norvegicus (taxid:10116)]

 Score = 199 (75.1 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 32/58 (55%), Positives = 46/58 (79%)

Query:    11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNGI 67
             AFGAVEAMSDR+CI + G+ +V +S++DL++CC + CG GCNGG+P  AW +W + G+
Sbjct:   110 AFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGL 167

GO:0050790 "regulation of catalytic activity" evidence=IEA

UNIPROTKB|A1E295 CTSB "Cathepsin B" [Sus scrofa (taxid:9823)]

 Score = 198 (74.8 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query:    11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCR-LCGFGCNGGFPGMAWRYWVKNGI 67
             AFGAVEA+SDR+CI S G+ +V +S++D+++CC   CG GCNGGFP  AW +W K G+
Sbjct:   110 AFGAVEAISDRICIRSNGRVNVEVSAEDMLTCCGDECGDGCNGGFPSGAWNFWTKKGL 167

GO:0005615 "extracellular space" evidence=IDA

GO:0042470 "melanosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P10605	CATB_MOUSE	3, ., 4, ., 2, 2, ., 1	0.5517	0.7702	0.1681	yes	N/A
Q5R6D1	CATB_PONAB	3, ., 4, ., 2, 2, ., 1	0.5172	0.7702	0.1681	yes	N/A
P43510	CPR6_CAEEL	3, ., 4, ., 2, 2, ., -	0.7457	0.7972	0.1556	yes	N/A
P43233	CATB_CHICK	3, ., 4, ., 2, 2, ., 1	0.5689	0.7702	0.1676	yes	N/A
P00787	CATB_RAT	3, ., 4, ., 2, 2, ., 1	0.5517	0.7702	0.1681	yes	N/A
P07858	CATB_HUMAN	3, ., 4, ., 2, 2, ., 1	0.5172	0.7702	0.1681	yes	N/A
P07688	CATB_BOVIN	3, ., 4, ., 2, 2, ., 1	0.5517	0.7702	0.1701	yes	N/A
A1E295	CATB_PIG	3, ., 4, ., 2, 2, ., 1	0.5689	0.7702	0.1701	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	74
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	5e-28
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	6e-18
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	1e-17
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	7e-11
cd02698	239	cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th	3e-05
PTZ00364	548	PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs	9e-04
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	0.002
cd02621	243	cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al	0.003

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score =  100 bits (250), Expect = 5e-28
 Identities = 35/59 (59%), Positives = 43/59 (72%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
          AF AVEA SDR+CI S GK++V LS+ DL+SCC  CG GCNGG+P  AW+Y    G+ T
Sbjct: 30 AFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKYLTTTGVVT 88

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score = 73.3 bits (181), Expect = 6e-18
 Identities = 27/56 (48%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG 66
          AF AV A+  R CI +G  K V LS   LV C      GCNGG P  A+ Y  KNG
Sbjct: 27 AFSAVGALEGRYCIKTG--KLVSLSEQQLVDCDT-GNNGCNGGLPDNAFEYIKKNG 79

Length = 213

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score = 71.5 bits (176), Expect = 1e-17
 Identities = 25/56 (44%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG 66
          AF A  A+  R CI +G    V LS   LV C      GCNGG P  A+ Y  KNG
Sbjct: 27 AFSATGALEGRYCIKTGK--LVSLSEQQLVDCSGGGNCGCNGGLPDNAFEYIKKNG 80

Length = 175

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score = 54.6 bits (132), Expect = 7e-11
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
          AF  V A+     I +G  K V LS   LV C      GCNGG P  A+ Y    G+ +
Sbjct: 26 AFSTVGALEGAYAIKTG--KLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVKNGGLAS 82

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

 Score = 39.3 bits (92), Expect = 3e-05
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 11 AFGAVEAMSDRVCIASGGK-KHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGI 67
          A G+  A++DR+ IA  G    V LS   ++ C    G  C+GG PG  + Y  K+GI
Sbjct: 33 AHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG--GGSCHGGDPGGVYEYAHKHGI 88

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239

>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional

 Score = 35.3 bits (81), Expect = 9e-04
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 12  FGAVEAMSDRVCIASG-----GKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG 66
             A+ AM  RV +AS      G++   LS+  ++ C +  G GC GGFP    ++    G
Sbjct: 238 EAALAAMMARVMVASNRTDPLGQQ-TFLSARHVLDCSQY-GQGCAGGFPEEVGKFAETFG 295

Query: 67  INT 69
           I T
Sbjct: 296 ILT 298

Length = 548

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 29  KKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGI 67
            K V LS  +LV+C      GC+GG+P  A  Y    G+
Sbjct: 277 DKSVDLSEQELVNCDTKSQ-GCSGGYPDTALEYVKNKGL 314

Length = 448

>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

 Score = 33.9 bits (78), Expect = 0.003
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 11 AFGAVEAMSDRVCIASGGKKHV----RLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG 66
          AF +V A+  R+ IAS     +     LS   ++SC +    GC+GGFP +  ++    G
Sbjct: 31 AFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQY-SQGCDGGFPFLVGKFAEDFG 89

Query: 67 I 67
          I
Sbjct: 90 I 90

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are associated with Papillon-Lefevre and Haim-Munk syndromes, rare diseases characterized by hyperkeratosis and early-onset periodontitis. Cathepsin C is widely expressed in many tissues with high levels in lung, kidney and placenta. It is also highly expressed in cytotoxic lymphocytes and mature myeloid cells. Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
KOG1542|consensus	372		99.96
KOG1543|consensus	325		99.95
cd02620	236	Peptidase_C1A_CathepsinB Cathepsin B group; compos	99.95
PTZ00203	348	cathepsin L protease; Provisional	99.94
PTZ00200	448	cysteine proteinase; Provisional	99.94
cd02621	243	Peptidase_C1A_CathepsinC Cathepsin C; also known a	99.94
PTZ00021	489	falcipain-2; Provisional	99.93
smart00645	174	Pept_C1 Papain family cysteine protease.	99.93
cd02698	239	Peptidase_C1A_CathepsinX Cathepsin X; the only pap	99.93
PTZ00364	548	dipeptidyl-peptidase I precursor; Provisional	99.92
cd02248	210	Peptidase_C1A Peptidase C1A subfamily (MEROPS data	99.92
PTZ00049	693	cathepsin C-like protein; Provisional	99.92
PF00112	219	Peptidase_C1: Papain family cysteine protease This	99.89
cd02619	223	Peptidase_C1 C1 Peptidase family (MEROPS database	99.88
PTZ00462	1004	Serine-repeat antigen protein; Provisional	99.86
KOG1544|consensus	470		99.76
cd00585	437	Peptidase_C1B Peptidase C1B subfamily (MEROPS data	98.25
PF03051	438	Peptidase_C1_2: Peptidase C1-like family This fami	97.89
COG4870	372	Cysteine protease [Posttranslational modification,	97.75
COG3579	444	PepC Aminopeptidase C [Amino acid transport and me	90.22

>KOG1542|consensus

Probab=99.96  E-value=3.9e-30  Score=171.68  Aligned_cols=71  Identities=37%  Similarity=0.559  Sum_probs=66.8

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHh-cCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVK-NGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~-~Gi~~e~~Y~   74 (74)
                      ||||.||||||||+++++|..+.|+++  +++.||+||||||+. +++||+||.+..||+|+++ .||..|++||
T Consensus       173 KnQG~CGSCWAFS~tG~vEga~~i~~g--~LvsLSEQeLvDCD~-~d~gC~GGl~~nA~~~~~~~gGL~~E~dYP  244 (372)
T KOG1542|consen  173 KNQGMCGSCWAFSTTGAVEGAWAIATG--KLVSLSEQELVDCDS-CDNGCNGGLMDNAFKYIKKAGGLEKEKDYP  244 (372)
T ss_pred             ccCCcCcchhhhhhhhhhhhHHHhhcC--cccccchhhhhcccC-cCCcCCCCChhHHHHHHHHhCCccccccCC
Confidence            799999999999999999999999999  899999999999986 4789999999999999665 4999999997

>KOG1543|consensus

Probab=99.95  E-value=2.5e-28  Score=163.42  Aligned_cols=73  Identities=44%  Similarity=0.687  Sum_probs=68.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCC-CCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT-YKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~-e~~Y~   74 (74)
                      |||+.|||||||+++++||++++|++++ .++.||+||||||+..++.||.||++..||+|++++|+++ +++||
T Consensus       126 kdQg~CgsCWAFaa~~aie~~~~i~~g~-~l~sLSeq~lvdC~~~~~~GC~GG~~~~A~~yi~~~G~~t~~~~Yp  199 (325)
T KOG1543|consen  126 KDQGSCGSCWAFAATGALEDRYNIKTGG-KLLSLSEQDLVDCCGECGDGCNGGEPKNAFKYIKKNGGVTECENYP  199 (325)
T ss_pred             CCCCcCcchHHHHHHHHHHHHHHHHhCC-ccCccChhhhhhccCCCCCCcCCCCHHHHHHHHHHhCCCCCCcCCC
Confidence            7999999999999999999999999997 6899999999999986678999999999999999998888 99986

>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

Probab=99.95  E-value=1.9e-27  Score=152.92  Aligned_cols=74  Identities=49%  Similarity=0.866  Sum_probs=67.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+.||+||||+++++||+++.|++++.+.+.||+|+||||+...+.||+||++..+|+|++++||++|++||
T Consensus        20 ~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~i~~~G~~~e~~yP   93 (236)
T cd02620          20 RDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKYLTTTGVVTGGCQP   93 (236)
T ss_pred             CCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHHHHhcCCCcCCEec
Confidence            69999999999999999999999988755678999999999986435799999999999999999999999986

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane

>PTZ00203 cathepsin L protease; Provisional

Probab=99.94  E-value=6.8e-27  Score=157.69  Aligned_cols=71  Identities=34%  Similarity=0.460  Sum_probs=65.2

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhc---CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN---GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~---Gi~~e~~Y~   74 (74)
                      |||+.|||||||+++++||++++|+++  +++.||+|+||||+.. +.||+||++..||+|++++   ||++|++||
T Consensus       142 kdQg~CGSCWAfa~~~aiEs~~~i~~~--~~~~LSeQqLvdC~~~-~~GC~GG~~~~a~~yi~~~~~ggi~~e~~YP  215 (348)
T PTZ00203        142 KNQGACGSCWAFSAVGNIESQWAVAGH--KLVRLSEQQLVSCDHV-DNGCGGGLMLQAFEWVLRNMNGTVFTEKSYP  215 (348)
T ss_pred             cccCCCccHHHHhhHHHHHHHHHHhcC--CCccCCHHHHHhccCC-CCCCCCCCHHHHHHHHHHhcCCCCCccccCC
Confidence            799999999999999999999999988  6789999999999864 5799999999999999864   588999996

>PTZ00200 cysteine proteinase; Provisional

Probab=99.94  E-value=7.1e-27  Score=161.56  Aligned_cols=71  Identities=30%  Similarity=0.481  Sum_probs=66.5

Q ss_pred             CCCC-CCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRA-EMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~-~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||| .||||||||+++++|++++|+++  ..+.||+|+||||+.. +.||+||++..||+|++++||++|++||
T Consensus       250 kdQG~~CGSCWAFat~~aiEs~~~i~~~--~~~~LSeQqLvDC~~~-~~GC~GG~~~~A~~yi~~~Gi~~e~~YP  321 (448)
T PTZ00200        250 KDQGLNCGSCWAFSSVGSVESLYKIYRD--KSVDLSEQELVNCDTK-SQGCSGGYPDTALEYVKNKGLSSSSDVP  321 (448)
T ss_pred             ccCCCccchHHHHhHHHHHHHHHHHhcC--CCeecCHHHHhhccCc-cCCCCCCcHHHHHHHHhhcCccccccCC
Confidence            7999 99999999999999999999877  6789999999999864 5799999999999999999999999997

>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

Probab=99.94  E-value=1.6e-26  Score=148.84  Aligned_cols=73  Identities=32%  Similarity=0.454  Sum_probs=66.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCC----CcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGG----KKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~----~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+.||+||||+++++||++++|++++    ...+.||+|+|+||+.. +.||+||++..+++|++++||++|++||
T Consensus        21 ~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~-~~GC~GG~~~~a~~~~~~~Gi~~e~~yP   97 (243)
T cd02621          21 RNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQY-SQGCDGGFPFLVGKFAEDFGIVTEDYFP   97 (243)
T ss_pred             CCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCC-CCCCCCCCHHHHHHHHHhcCcCCCceeC
Confidence            7999999999999999999999998874    23689999999999863 5799999999999999999999999986

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc

>PTZ00021 falcipain-2; Provisional

Probab=99.93  E-value=1.3e-26  Score=161.32  Aligned_cols=71  Identities=24%  Similarity=0.354  Sum_probs=66.3

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhc-CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~-Gi~~e~~Y~   74 (74)
                      ||||.||||||||++++||++++|+++  .++.||+|+||||+.. +.||+||++..||+|+.++ ||++|++||
T Consensus       282 KdQG~CGSCWAFAa~~alEs~~~I~~g--~~v~LSeQqLVDCs~~-n~GC~GG~~~~Af~yi~~~gGl~tE~~YP  353 (489)
T PTZ00021        282 KDQKNCGSCWAFSTVGVVESQYAIRKN--ELVSLSEQELVDCSFK-NNGCYGGLIPNAFEDMIELGGLCSEDDYP  353 (489)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHcC--CCcccCHHHHhhhccC-CCCCCCcchHhhhhhhhhccccCcccccC
Confidence            799999999999999999999999988  6789999999999864 6799999999999999776 999999997

>smart00645 Pept_C1 Papain family cysteine protease

Probab=99.93  E-value=7.9e-26  Score=140.02  Aligned_cols=72  Identities=39%  Similarity=0.607  Sum_probs=66.5

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhc-CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~-Gi~~e~~Y~   74 (74)
                      |||+.||+||||+++++||++++|+++  +.+.||+|+|++|....+.||+||++..|++|++++ ||++|++||
T Consensus        17 ~dQg~CGsCwAfa~~~~ie~~~~i~~~--~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~~P   89 (174)
T smart00645       17 KDQGQCGSCWAFSATGALEGRYCIKTG--KLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNGGLETESCYP   89 (174)
T ss_pred             ccCcccchHHHHHHHHHHHHHHHHhcC--CccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcCCcccccccC
Confidence            799999999999999999999999988  578999999999986434599999999999999998 999999986

>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

Probab=99.93  E-value=1.1e-25  Score=145.05  Aligned_cols=72  Identities=33%  Similarity=0.462  Sum_probs=65.7

Q ss_pred             CCCC---CCchHHHHHHHHHHHHHHHHHcCCC-cceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRA---EMSSDEAFGAVEAMSDRVCIASGGK-KHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~---~Cgscwafa~~~~~e~~~~i~~~~~-~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+   .||||||||++++||+++.|+++++ ..+.||+|+||||+.  +.||+||++..+++|++++||++|++||
T Consensus        20 k~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~--~~gC~GG~~~~a~~~~~~~Gl~~e~~yP   95 (239)
T cd02698          20 RNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG--GGSCHGGDPGGVYEYAHKHGIPDETCNP   95 (239)
T ss_pred             ccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC--CCCccCcCHHHHHHHHHHcCcCCCCeeC
Confidence            7898   8999999999999999999987643 357899999999986  5799999999999999999999999986

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.

>PTZ00364 dipeptidyl-peptidase I precursor; Provisional

Probab=99.92  E-value=2.2e-25  Score=156.84  Aligned_cols=72  Identities=29%  Similarity=0.421  Sum_probs=66.0

Q ss_pred             CCCCC---CchHHHHHHHHHHHHHHHHHcCCC----cceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCC
Q psy8704           1 MNRAE---MSSDEAFGAVEAMSDRVCIASGGK----KHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPV   73 (74)
Q Consensus         1 rdQ~~---Cgscwafa~~~~~e~~~~i~~~~~----~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y   73 (74)
                      |||+.   ||||||||++++||+|++|+++++    ..+.||+|+||||+. ++.||+||++..|++|++++||++|++|
T Consensus       224 rdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~-~n~GCdGG~p~~A~~yi~~~GI~tE~dY  302 (548)
T PTZ00364        224 PPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ-YGQGCAGGFPEEVGKFAETFGILTTDSY  302 (548)
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC-CCCCCCCCcHHHHHHHHHhCCccccccc
Confidence            79999   999999999999999999998642    368899999999985 3689999999999999999999999998

>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

Probab=99.92  E-value=6.6e-25  Score=137.62  Aligned_cols=72  Identities=32%  Similarity=0.490  Sum_probs=66.6

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+.||+|||||++++||++++|+++  ..+.||+|+|++|....+.+|.||++..+++|++++|+++|++||
T Consensus        16 ~dQg~cgsCwAfa~~~~le~~~~i~~~--~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yP   87 (210)
T cd02248          16 KDQGSCGSCWAFSTVGALEGAYAIKTG--KLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVKNGGLASESDYP   87 (210)
T ss_pred             ccCCCCcchHHhHHHHHHHHHHHHHcC--CCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHHHCCcCccccCC
Confidence            799999999999999999999999988  678899999999986435799999999999999999999999986

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h

>PTZ00049 cathepsin C-like protein; Provisional

Probab=99.92  E-value=6.2e-25  Score=156.98  Aligned_cols=73  Identities=27%  Similarity=0.278  Sum_probs=65.0

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCC--------cceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGK--------KHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKP   72 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~--------~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~   72 (74)
                      |||+.||||||||++++||+|++|++++.        ....||+|+||||+.. +.||+||++..|++|++++||++|.+
T Consensus       401 kdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~-nqGC~GG~~~~A~kya~~~GI~tEsc  479 (693)
T PTZ00049        401 TNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFY-DQGCNGGFPYLVSKMAKLQGIPLDKV  479 (693)
T ss_pred             CCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCC-CCCcCCCcHHHHHHHHHHCCCCcCCc
Confidence            69999999999999999999999987521        1237999999999863 68999999999999999999999999


Q ss_pred             CC
Q psy8704          73 VK   74 (74)
Q Consensus        73 Y~   74 (74)
                      ||
T Consensus       480 YP  481 (693)
T PTZ00049        480 FP  481 (693)
T ss_pred             cC
Confidence            86

>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification

Probab=99.89  E-value=2.9e-23  Score=129.96  Aligned_cols=73  Identities=33%  Similarity=0.469  Sum_probs=64.6

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHh-cCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVK-NGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~-~Gi~~e~~Y~   74 (74)
                      |||+.||+|||||+++++|.+++++.. ...+.||+|+|++|....+.+|+||++..+++|+++ +||++|++||
T Consensus        18 ~dQg~~gsCwafa~~~~~e~~~~~~~~-~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~~~Gi~~e~~~p   91 (219)
T PF00112_consen   18 RDQGSCGSCWAFAAAAALESRLAIQNN-GKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKNNNGIVTEEDYP   91 (219)
T ss_dssp             -BTTSSBTHHHHHHHHHHHHHHHHHHT-SSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHHHTSBEBTTTS-
T ss_pred             ccCCcccccccchhccceecccccccc-ccccccccccccccccccccccccCcccccceeecccCccccccccc
Confidence            799999999999999999999999984 378999999999998733579999999999999999 8999999985

; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....

>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

Probab=99.88  E-value=2.8e-22  Score=125.60  Aligned_cols=74  Identities=26%  Similarity=0.239  Sum_probs=66.0

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCC----CCCCCCCCHHHHHH-HHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLC----GFGCNGGFPGMAWR-YWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~----~~gC~GG~~~~a~~-y~~~~Gi~~e~~Y~   74 (74)
                      |||+.||+|||||+++++|+++.++......+.||+|+|++|....    ..+|.||.+..++. +++.+||++|++||
T Consensus        13 ~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~~~~Gi~~e~~~P   91 (223)
T cd02619          13 KNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLVALKGIPPEEDYP   91 (223)
T ss_pred             ccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHHHHcCCCccccCC
Confidence            7999999999999999999999998764456899999999998652    25899999999998 88889999999986

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str

>PTZ00462 Serine-repeat antigen protein; Provisional

Probab=99.86  E-value=1.1e-21  Score=144.01  Aligned_cols=72  Identities=11%  Similarity=0.088  Sum_probs=62.9

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCC-CCCCCCCCC-HHHHHHHHHhc-CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGF-PGMAWRYWVKN-GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~-~~~gC~GG~-~~~a~~y~~~~-Gi~~e~~Y~   74 (74)
                      ||||.||+|||||++++||++++|+++  ..+.||+|+|+||+.. .+.||.||+ +..++.|++++ ||++|++||
T Consensus       548 KDQG~CGSCWAFASaaaLES~~cIkgg--~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYP  622 (1004)
T PTZ00462        548 EDQGNCAISWIFASKYHLETIKCMKGY--EPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYL  622 (1004)
T ss_pred             ccCCcchHHHHHHHHHHHHHHHHHhcC--CCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCC
Confidence            799999999999999999999999987  6789999999999864 247999997 55566999888 589999986

>KOG1544|consensus

Probab=99.76  E-value=2.7e-20  Score=124.76  Aligned_cols=73  Identities=32%  Similarity=0.458  Sum_probs=69.2

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         2 dQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      ||++|++.|||+++++..+|++|++.+..+..||+|+||+|+.....||.||.++.||-||++.|++++.+||
T Consensus       228 DQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKrGvVsdhCYP  300 (470)
T KOG1544|consen  228 DQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKRGVVSDHCYP  300 (470)
T ss_pred             ccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeeccccccccccc
Confidence            8999999999999999999999999988889999999999987655899999999999999999999999996

>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)

Probab=98.25  E-value=6e-06  Score=57.85  Aligned_cols=73  Identities=16%  Similarity=0.084  Sum_probs=58.5

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcC------------------C---------CCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCR------------------L---------CGFGCNGG   53 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~------------------~---------~~~gC~GG   53 (74)
                      +||+.-|-||.||++.+|+..+..+.+. ..+.||+.++..=+.                  .         ...--+||
T Consensus        58 tnQ~~SGrCW~FA~Ln~lr~~~~k~~~~-~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~DGG  136 (437)
T cd00585          58 TNQKSSGRCWLFAALNVLRHQFMKKLNL-KEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQNDGG  136 (437)
T ss_pred             ccCCCCchhHHHHCHHHHHHHHHHHcCC-CCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCCCC
Confidence            5899999999999999999998876553 468999988776111                  0         12356899


Q ss_pred             CHHHHHHHHHhcCCCCCCCCC
Q psy8704          54 FPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus        54 ~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      .-..+...|++.|+++.+.|+
T Consensus       137 qw~m~~~li~KYGvVPk~~~p  157 (437)
T cd00585         137 QWDMLVNLIEKYGLVPKSVMP  157 (437)
T ss_pred             chHHHHHHHHHcCCCcccccC
Confidence            999999999999999998875

The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w

>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.89  E-value=2e-05  Score=55.32  Aligned_cols=73  Identities=16%  Similarity=0.091  Sum_probs=46.4

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHh----------------hhcCC-----------CCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLV----------------SCCRL-----------CGFGCNGG   53 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~li----------------dC~~~-----------~~~gC~GG   53 (74)
                      .||..-|-||.||++.+++..+..+.+. ..+.||+.++.                +....           ...--+||
T Consensus        59 tnQk~SGRCW~FA~lN~lR~~~~kk~~l-~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~DGG  137 (438)
T PF03051_consen   59 TNQKSSGRCWLFAALNVLRHEIMKKLNL-KDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSDGG  137 (438)
T ss_dssp             -B--BSSTHHHHHHHHHHHHHHHHHCT--SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S-B
T ss_pred             CCCCCCCCcchhhchHHHHHHHHHHcCC-CceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCCCC
Confidence            4899999999999999999998887663 46899998865                22110           01246899


Q ss_pred             CHHHHHHHHHhcCCCCCCCCC
Q psy8704          54 FPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus        54 ~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      .-+.+..-|++.||++.+.||
T Consensus       138 qw~~~~nli~KYGvVPk~~mp  158 (438)
T PF03051_consen  138 QWDMVVNLIKKYGVVPKSVMP  158 (438)
T ss_dssp             -HHHHHHHHHHH---BGGGST
T ss_pred             chHHHHHHHHHcCcCcHhhCC
Confidence            999999899989999988875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....

>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=3.5e-06  Score=57.64  Aligned_cols=26  Identities=15%  Similarity=0.104  Sum_probs=23.2

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHc
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIAS   26 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~   26 (74)
                      |||+.||+||||+++.++|+.+....
T Consensus       115 ~dQg~~Gscwaf~t~~sles~l~~~~  140 (372)
T COG4870         115 KDQGSGGSCWAFATTRSLESYLNPES  140 (372)
T ss_pred             cccCcccceEeeeehhhhhheecccc
Confidence            69999999999999999998877654

>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]

Probab=90.22  E-value=1.1  Score=31.36  Aligned_cols=72  Identities=14%  Similarity=0.057  Sum_probs=45.8

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcC----------------C-----------CCCCCCCCC
Q psy8704           2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCR----------------L-----------CGFGCNGGF   54 (74)
Q Consensus         2 dQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~----------------~-----------~~~gC~GG~   54 (74)
                      ||..-|-||.||++-.+-..+.-+-+ .+.+.||..++.-=+.                .           -.--=+||-
T Consensus        62 NQk~SGRCWmFAAlNtfRhk~~~el~-le~fElSQaytfFwDKlEKaN~FleqIi~tadq~ldsRlv~~LL~~PqqDGGQ  140 (444)
T COG3579          62 NQKQSGRCWMFAALNTFRHKLISELK-LEDFELSQAYTFFWDKLEKANWFLEQIIETADQELDSRLVSFLLATPQQDGGQ  140 (444)
T ss_pred             cccccceehHHHHHHHHHHHHHHhcC-cceeehhhHHHHHHHHHHHhhHHHHHHHhhcccchHHHHHHHHHcCccccCch
Confidence            78888999999999888544433322 2345666544332221                0           011246787


Q ss_pred             HHHHHHHHHhcCCCCCCCCC
Q psy8704          55 PGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus        55 ~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      -++....+++.|+++.+.|+
T Consensus       141 wdM~v~l~eKYGvVpK~~yp  160 (444)
T COG3579         141 WDMFVSLFEKYGVVPKSVYP  160 (444)
T ss_pred             HHHHHHHHHHhCCCchhhcc
Confidence            77777777778999988875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	74
3qsd_A	254	Structure Of Cathepsin B1 From Schistosoma Mansoni		6e-18
1mir_A	322	Rat Procathepsin B Length = 322		8e-15
1cpj_A	260	Crystal Structures Of Recombinant Rat Cathepsin B A		1e-14
1cte_A	254	Crystal Structures Of Recombinant Rat Cathepsin B A		1e-14
1pbh_A	317	Crystal Structure Of Human Recombinant Procathepsin		9e-14
3cbj_A	266	Chagasin-cathepsin B Complex Length = 266		1e-13
1gmy_A	261	Cathepsin B Complexed With Dipeptidyl Nitrile Inhib		1e-13
3ai8_B	256	Cathepsin B In Complex With The Nitroxoline Length		1e-13
3k9m_A	254	Cathepsin B In Complex With Stefin A Length = 254		1e-13
3mor_A	317	Crystal Structure Of Cathepsin B From Trypanosoma B		6e-09
3hhi_A	325	Crystal Structure Of Cathepsin B From T. Brucei In		6e-09
4hwy_A	340	Trypanosoma Brucei Procathepsin B Solved From 40 Fs		6e-09
1ito_A	256	Crystal Structure Analysis Of Bovine Spleen Catheps		6e-07
1huc_B	205	The Refined 2.15 Angstroms X-Ray Crystal Structure		1e-06
1qdq_A	253	X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074		5e-06

>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 45/59 (76%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
          AFGAVEAMSDR CI SGGK++V LS+ DL+SCC  CG GC GG  G AW YWVK GI T
Sbjct: 33 AFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGLGCEGGILGPAWDYWVKEGIVT 91

>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 8   SDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNG 66
           S  AFGAVEAMSDR+CI + G+ +V +S++DL++CC + CG GCNGG+P  AW +W + G
Sbjct: 90  SSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKG 149
Query: 67  I 67
           +
Sbjct: 150 L 150

>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNGI 67
          AFGAVEAMSDR+CI + G+ +V +S++DL++CC + CG GCNGG+P  AW +W + G+
Sbjct: 37 AFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGL 94

>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNGI 67
          AFGAVEAMSDR+CI + G+ +V +S++DL++CC + CG GCNGG+P  AW +W + G+
Sbjct: 31 AFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGL 88

>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC-RLCGFGCNGGFPGMAWRYWVKNGI 67
           AFGAVEA+SDR+CI +     V +S++DL++CC  +CG GCNGG+P  AW +W + G+
Sbjct: 94  AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGL 151

>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC-RLCGFGCNGGFPGMAWRYWVKNGI 67
          AFGAVEA+SDR+CI +     V +S++DL++CC  +CG GCNGG+P  AW +W + G+
Sbjct: 37 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGL 94

>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC-RLCGFGCNGGFPGMAWRYWVKNGI 67
          AFGAVEA+SDR+CI +     V +S++DL++CC  +CG GCNGG+P  AW +W + G+
Sbjct: 32 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGL 89

>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC-RLCGFGCNGGFPGMAWRYWVKNGI 67
          AFGAVEA+SDR+CI +     V +S++DL++CC  +CG GCNGG+P  AW +W + G+
Sbjct: 33 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGL 90

>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC-RLCGFGCNGGFPGMAWRYWVKNGI 67
          AFGAVEA+SDR+CI +     V +S++DL++CC  +CG GCNGG+P  AW +W + G+
Sbjct: 31 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGL 88

>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGI 67
           A  A  AMSDR C   GG + V +S+ DL++CC  CG GCNGG P  AW Y+   G+
Sbjct: 101 AVAAASAMSDRFCTM-GGVQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGL 156

>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGI 67
           A  A  AMSDR C   GG + V +S+ DL++CC  CG GCNGG P  AW Y+   G+
Sbjct: 102 AVAAASAMSDRFCTM-GGVQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGL 157

>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGI 67
           A  A  AMSDR C   GG + V +S+ DL++CC  CG GCNGG P  AW Y+   G+
Sbjct: 124 AVAAASAMSDRFCTM-GGVQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGL 179

>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVS-CCRLCGFGCNGGFPGMAWRYWVKNGI 67
          AFGAVEA+SDR+CI S G+ +V +S++D+++ C   CG GCNGGFP  AW +W K G+
Sbjct: 31 AFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGFPSGAWNFWTKKGL 88

>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 32 VRLSSDDLVSCC-RLCGFGCNGGFPGMAWRYWVKNGI 67
          V +S++DL++CC  +CG GCNGG+P  AW +W + G+
Sbjct: 3  VEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGL 39

>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGF-PGMAWRYWVKNGI 67
          AFGAVEA+SDR+CI S G+ +V +S++D+++CC         G  P  AW +W K G+
Sbjct: 31 AFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGEPSGAWNFWTKKGL 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	74
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	1e-29
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	6e-28
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	1e-26
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	1e-26
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	1e-23
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	1e-20
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	1e-09
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	4e-08
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	6e-07
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	6e-07
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	2e-06
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	5e-06
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	5e-06
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	7e-06
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	8e-06
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	9e-06
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	1e-05
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	1e-05
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	1e-05
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	1e-05
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	2e-05
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	2e-05
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	2e-05
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	3e-05
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	7e-05
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	9e-05
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	9e-05
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	1e-04
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	1e-04
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	2e-04
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	2e-04
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	3e-04
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	3e-04
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	4e-04
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	5e-04
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	6e-04

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score =  103 bits (260), Expect = 1e-29
 Identities = 41/59 (69%), Positives = 45/59 (76%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
          AFGAVEAMSDR CI SGGK++V LS+ DL+SCC  CG GC GG  G AW YWVK GI T
Sbjct: 33 AFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGLGCEGGILGPAWDYWVKEGIVT 91

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score =  100 bits (252), Expect = 6e-28
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
           A  A  AMSDR C   G +  V +S+ DL++CC  CG GCNGG P  AW Y+   G+ +
Sbjct: 102 AVAAASAMSDRFCTMGGVQD-VHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVS 159

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score = 96.6 bits (241), Expect = 1e-26
 Identities = 30/60 (50%), Positives = 44/60 (73%), Gaps = 1/60 (1%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCR-LCGFGCNGGFPGMAWRYWVKNGINT 69
          AFGAVEA+SDR+CI +     V +S++DL++CC  +CG GCNGG+P  AW +W + G+ +
Sbjct: 37 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVS 96

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score = 97.4 bits (243), Expect = 1e-26
 Identities = 30/60 (50%), Positives = 44/60 (73%), Gaps = 1/60 (1%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCR-LCGFGCNGGFPGMAWRYWVKNGINT 69
           AFGAVEA+SDR+CI +     V +S++DL++CC  +CG GCNGG+P  AW +W + G+ +
Sbjct: 94  AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVS 153

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score = 88.9 bits (221), Expect = 1e-23
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 11  AFGAVEAMSDRVCIASGGK-KHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
           A  +  AM+DR+ I   G      LS  +++ C       C GG     W Y  ++GI  
Sbjct: 68  AHASTSAMADRINIKRKGAWPSTLLSVQNVIDCG--NAGSCEGGNDLSVWDYAHQHGIPD 125

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score = 82.5 bits (204), Expect = 1e-20
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMA-WRYWVKNGINT 69
           +F ++  +  R+ I +   +   LS  ++VSC +    GC GGFP +   +Y    G+  
Sbjct: 236 SFASMGMLEARIRILTNNSQTPILSPQEVVSCSQ-YAQGCEGGFPYLIAGKYAQDFGLVE 294

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score = 51.0 bits (122), Expect = 1e-09
 Identities = 5/61 (8%), Positives = 14/61 (22%), Gaps = 2/61 (3%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL--CGFGCNGGFPGMAWRYWVKNGIN 68
           A     A+           + +        +  ++       +G       +   K G+ 
Sbjct: 80  ANALAAAIQFERIHDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVC 139

Query: 69  T 69
            
Sbjct: 140 P 140

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265

 Score = 46.9 bits (112), Expect = 4e-08
 Identities = 7/62 (11%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCR-LCGFGCNGGFPGMAWRYWVKN--GI 67
           F +   +    C+     +  ++S+  + +C +      C+ G   M +   +++   +
Sbjct: 36 IFASKYHLETIRCMKGY--EPTKISALYVANCYKGEHKDRCDEGSSPMEFLQIIEDYGFL 93

Query: 68 NT 69
            
Sbjct: 94 PA 95

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score = 43.8 bits (104), Expect = 6e-07
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKN-GIN 68
           AF A  A+  ++   +G  + + LS  +LV C    G  GCNGG    A++Y   N G++
Sbjct: 123 AFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLD 180

Query: 69  T 69
           +
Sbjct: 181 S 181

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score = 43.4 bits (103), Expect = 6e-07
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKNGINT 69
           +F    A+  ++ +  G  +   LS  +L+ C    G  GC+GG+   A+ Y    GI +
Sbjct: 141 SFSTTGAVEGQLALQRG--RLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDYGIMS 198

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
           AF AV  +     I +G  K V LS  +LV C R    GC GG+P  A  Y  KNGI+ 
Sbjct: 133 AFSAVATVEGINKIRTG--KLVELSEQELVDCERRS-HGCKGGYPPYALEYVAKNGIHL 188

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A* Length = 222

 Score = 41.0 bits (97), Expect = 5e-06
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 4/59 (6%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
          AF  V A            + + L+  +LV C      GC+G        Y   NG+  
Sbjct: 36 AFSGVAATESAYLAYRQ--QSLDLAEQELVDCAS--QHGCHGDTIPRGIEYIQHNGVVQ 90

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score = 40.7 bits (96), Expect = 5e-06
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
          AF  V ++     I +G    V LS  +L+ C      GC GG    A+ Y   N G+ T
Sbjct: 30 AFSTVVSVEGINAIRTG--SLVSLSEQELIDCDTADNDGCQGGLMDNAFEYIKNNGGLIT 87

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score = 40.7 bits (96), Expect = 7e-06
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKNGINT 69
           AF     M  +          +  S   LV C R  G  GC GG    A++Y  + G+ T
Sbjct: 118 AFSTTGTMEGQYMKNER--TSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQFGLET 175

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score = 40.1 bits (95), Expect = 8e-06
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
          AF AV  +     I +G  K V LS  +LV C R    GC GG+P  A  Y  KNGI+ 
Sbjct: 27 AFSAVATVEGINKIRTG--KLVELSEQELVDCERRS-HGCKGGYPPYALEYVAKNGIHL 82

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score = 40.1 bits (95), Expect = 9e-06
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
          AF  V  +     I +G  + + LS  +L+ C R    GC+GG+   + +Y V NG++T
Sbjct: 27 AFSTVATIEGINKIITG--QLISLSEQELLDCERRS-HGCDGGYQTTSLQYVVDNGVHT 82

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
           AF +V A+  ++   +G  K + LS  +LV C      GC GG+   A++Y  KN GI++
Sbjct: 126 AFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVSEN-DGCGGGYMTNAFQYVQKNRGIDS 182

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score = 39.8 bits (94), Expect = 1e-05
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKN-GIN 68
          AF A  A+  ++   +G  + + LS  +LV C    G  GCNGG    A++Y   N G++
Sbjct: 27 AFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLD 84

Query: 69 T 69
          +
Sbjct: 85 S 85

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score = 39.9 bits (94), Expect = 1e-05
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 4/59 (6%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
           AF  V A            + + L+  +LV C      GC+G        Y   NG+  
Sbjct: 116 AFSGVAATESAYLAYRD--QSLDLAEQELVDCAS--QHGCHGDTIPRGIEYIQHNGVVQ 170

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score = 39.4 bits (93), Expect = 1e-05
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
          AF  + A+     I +   K V LS  +LV C      GCNGG    A+ +  +  GI T
Sbjct: 28 AFSTIVAVEGINQIKTN--KLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGITT 85

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
          AF +V A+  ++   +G  K + LS  +LV C      GC GG+   A++Y  KN GI++
Sbjct: 27 AFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVSEN-DGCGGGYMTNAFQYVQKNRGIDS 83

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score = 39.0 bits (92), Expect = 2e-05
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
          AF AV  +   + I +G     + S  +L+ C R   +GCNGG+P  A +   + GI+ 
Sbjct: 27 AFSAVVTIEGIIKIRTG--NLNQYSEQELLDCDRRS-YGCNGGYPWSALQLVAQYGIHY 82

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score = 39.0 bits (92), Expect = 2e-05
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
          AF  +  +     I +G    + LS  +LV C +   +GC GG+   + +Y   NG++T
Sbjct: 27 AFSTIATVEGINKIVTG--NLLELSEQELVDCDKHS-YGCKGGYQTTSLQYVANNGVHT 82

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score = 38.6 bits (91), Expect = 3e-05
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKN-GIN 68
           F    A+   V IA+G  K + L+   LV C +     GC GG P  A+ Y   N GI 
Sbjct: 28 TFSTTGALESAVAIATG--KMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIM 85

Query: 69 T 69
           
Sbjct: 86 G 86

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A Length = 220

 Score = 37.5 bits (88), Expect = 7e-05
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKN-GIN 68
          AF  + A+     IA+G    + LS  +LV C R     GC+GGF    +++ + N GIN
Sbjct: 27 AFSTIAAVEGINKIATG--DLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINNGGIN 84

Query: 69 T 69
          T
Sbjct: 85 T 85

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score = 37.4 bits (88), Expect = 9e-05
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
           F +V A+     I +G  + + LS  +L+ C R   +GC GGFP  A +Y   +GI+ 
Sbjct: 27 TFSSVAAVEGINKIVTG--QLLSLSEQELLDCERRS-YGCRGGFPLYALQYVANSGIHL 82

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score = 37.5 bits (88), Expect = 9e-05
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKN-GIN 68
          AF    A+    C  +G  K V LS  +L+ C R  G   C+GG    A++Y + + GI 
Sbjct: 33 AFSTTGALEGAHCAKTG--KLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYVLDSGGIC 90

Query: 69 T 69
          +
Sbjct: 91 S 91

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG--FGCNGGFPGMAWRYWVKN-GI 67
           AF AV A+  ++ + +G  K V LS+ +LV C        GCNGGF   A++Y + N GI
Sbjct: 125 AFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGI 182

Query: 68  NT 69
           ++
Sbjct: 183 DS 184

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
           AF +  A+  ++ IA+G      +S   LV C      GC+GG+   A+ Y  +N GI++
Sbjct: 142 AFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNA-LGCSGGWMNDAFTYVAQNGGIDS 200

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
          AF  V A+     I +G    + LS   LV C      GC GG+   A+++ V N GIN+
Sbjct: 29 AFSTVAAVEGINQIVTG--DLISLSEQQLVDCTT-ANHGCRGGWMNPAFQFIVNNGGINS 85

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG--FGCNGGFPGMAWRYWVKN-GI 67
          AF AV A+  ++ + +G  K V LS+ +LV C        GCNGGF   A++Y + N GI
Sbjct: 28 AFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGI 85

Query: 68 NT 69
          ++
Sbjct: 86 DS 87

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score = 36.0 bits (84), Expect = 3e-04
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
           AF +V ++  +  I          S  +LV C      GC GG+   A+   +   G+ +
Sbjct: 46  AFSSVGSVESQYAIRKK--ALFLFSEQELVDCSVKN-NGCYGGYITNAFDDMIDLGGLCS 102

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score = 35.6 bits (83), Expect = 3e-04
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
           AF ++ ++  +  I     K + LS  +LV C     +GCNGG    A+   ++  GI  
Sbjct: 44  AFSSIGSVESQYAIRKN--KLITLSEQELVDCSFKN-YGCNGGLINNAFEDMIELGGICP 100

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score = 35.6 bits (83), Expect = 4e-04
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
          AF AV A+     I +G  + + LS  +LV C      GCNGG+   A++Y + N GI+T
Sbjct: 27 AFSAVAAVESINKIRTG--QLISLSEQELVDCDTAS-HGCNGGWMNNAFQYIITNGGIDT 83

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score = 35.3 bits (82), Expect = 5e-04
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
          AF A  A+     IA+G    V LS  +L+ C      GC  G+   ++ + VK+ GI +
Sbjct: 28 AFSATGAIEAAHAIATG--NLVSLSEQELIDCVDES-EGCYNGWHYQSFEWVVKHGGIAS 84

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score = 35.1 bits (82), Expect = 6e-04
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
          AF     +  +  +  G    + LS  +L+ C +     C GG P  A+       G+ T
Sbjct: 27 AFSVTGNVEGQWFLNQG--TLLSLSEQELLDCDK-MDKACMGGLPSNAYSAIKNLGGLET 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	99.96
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	99.96
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	99.96
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	99.95
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	99.95
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	99.95
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	99.95
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	99.95
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	99.95
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	99.95
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	99.95
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	99.95
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	99.95
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	99.95
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	99.95
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	99.95
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	99.95
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	99.95
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	99.95
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	99.95
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	99.95
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	99.95
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	99.95
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	99.95
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	99.95
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	99.95
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	99.95
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	99.95
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	99.95
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	99.95
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	99.94
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	99.94
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	99.94
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	99.94
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	99.94
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	99.94
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	99.94
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	99.94
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	99.93
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	99.91
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	99.89
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	99.86
2cb5_A	453	Protein (bleomycin hydrolase); aminopeptidase, cys	99.85

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*

Probab=99.96  E-value=1.8e-29  Score=162.64  Aligned_cols=73  Identities=58%  Similarity=1.031  Sum_probs=68.0

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPV   73 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y   73 (74)
                      |||+.||||||||++++||++++|+++++.++.||+|+|+||+...+.||+||++..||+|++++||++|++|
T Consensus        23 kdQg~CGSCWAFaa~~ale~~~~i~~~~~~~~~LSeQ~lvdC~~~~~~GC~GG~~~~a~~yi~~~Gi~~e~~y   95 (254)
T 3qsd_A           23 RDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSK   95 (254)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHTTTCCCCCBCHHHHHHHCTTSBCTTBCBCHHHHHHHHHHTCBCBCCCT
T ss_pred             CCcccCccHHHHHHHHHHHHHHHHHhCCCccccCCHHHHHhhhcCCCCCCCCCCHHHHHHHHHHcCCCccccc
Confidence            7999999999999999999999999876568999999999998655689999999999999999999999887

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=99.96  E-value=1.9e-29  Score=167.64  Aligned_cols=73  Identities=38%  Similarity=0.706  Sum_probs=67.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|++++ .++.||+|+|+||+..++.||+||++..||+|++++||++|++||
T Consensus        92 kdQg~CGSCWAFsa~~alE~~~~i~~~~-~~~~LSeQ~LvdC~~~~~~GC~GG~~~~A~~yi~~~Gi~~e~~yP  164 (325)
T 3hhi_A           92 ADQSACGSCWAVAAASAMSDRFCTMGGV-QDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQP  164 (325)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHTSSC-SSCCBCHHHHHHHCGGGBCTTBCBCHHHHHHHHHHTCBCBTTTSC
T ss_pred             cCCCCccccHHHHHHHHHHHHHHHHhCC-CccccCHHHHHHhccCCCCCCCCCCHHHHHHHHHHhCCCcccccC
Confidence            7999999999999999999999999883 278999999999986556899999999999999999999999986

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=99.96  E-value=2.1e-29  Score=166.97  Aligned_cols=73  Identities=42%  Similarity=0.940  Sum_probs=68.0

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcC-CCCCCCCCCCHHHHHHHHHhcCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCR-LCGFGCNGGFPGMAWRYWVKNGINTYKPV   73 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~-~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y   73 (74)
                      |||+.||||||||++++||++++|+++++.++.||+|+|+||+. .++.||+||++..||+|++++||++|++|
T Consensus        84 kdQg~CGSCWAFsa~~ale~~~~i~~~~~~~~~LSeq~LvdC~~~~~~~GC~GG~~~~A~~yi~~~Gi~te~~Y  157 (317)
T 3pbh_A           84 RDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLY  157 (317)
T ss_dssp             CBCCSSCCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHSCTTTBCGGGCBCHHHHHHHHHHTCEEBBCST
T ss_pred             cccCCccchHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHhccccCCCCCCCCCHHHHHHHHHHhCCCcchhc
Confidence            79999999999999999999999998865689999999999986 45689999999999999999999999887

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...

Probab=99.95  E-value=1e-28  Score=155.72  Aligned_cols=71  Identities=30%  Similarity=0.483  Sum_probs=66.9

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||+. .+.||+||++..||+|++++||++|++||
T Consensus        17 kdQg~CGsCWAfa~~~~le~~~~i~~g--~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~yi~~~Gi~~e~~yP   87 (212)
T 2cio_A           17 KNQGSCGSCWAFSAVVTIEGIIKIRTG--NLNQYSEQELLDCDR-RSYGCNGGYPWSALQLVAQYGIHYRNTYP   87 (212)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCT-TSCTTBCCCHHHHHHHHHHTCBCBTTTSC
T ss_pred             ccCCccchHHHHHHHHHHHHHHHHhcC--CccccCHHHHHHhCC-CCCCCCCCCHHHHHHHHHHhCcCcccccC
Confidence            799999999999999999999999988  779999999999985 36799999999999999999999999986

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*

Probab=99.95  E-value=1.7e-28  Score=155.07  Aligned_cols=71  Identities=37%  Similarity=0.547  Sum_probs=66.9

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||.. .+.||+||++..||+|++++||++|++||
T Consensus        17 kdQg~cGsCWAfa~~~~le~~~~i~~g--~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~yi~~~Gi~~e~~yP   87 (216)
T 1ppo_A           17 RHQGSCGSCWAFSAVATVEGINKIRTG--KLVELSEQELVDCER-RSHGCKGGYPPYALEYVAKNGIHLRSKYP   87 (216)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCS-SSCTTBCCCHHHHHHHHHHHCBCBTTTSC
T ss_pred             ccCCcCccHHHHHHHHHHHHHHHHccC--CceecCHHHHHhccC-CCCCCCCCCHHHHHHHHHHhCcCccccCC
Confidence            799999999999999999999999988  679999999999985 36799999999999999999999999996

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=99.95  E-value=1.6e-28  Score=165.33  Aligned_cols=71  Identities=30%  Similarity=0.503  Sum_probs=67.5

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      ||||.||||||||++++||++++|+++  .++.||+|+||||+.. +.||+||++..||+|++++||++|++||
T Consensus       168 kdQG~CGSCWAFsa~~alE~~~~i~tg--~~~~LSeQ~LvdC~~~-~~GC~GG~~~~a~~yi~~~Gi~~e~~yP  238 (363)
T 3tnx_A          168 KNQGSCGSAWAFSAVSTIESIIKIRTG--NLNEYSEQELLDCDRR-SYGCNGGYPWSALQLVAQYGIHYRNTYP  238 (363)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTT-SCTTBCCCHHHHHHHHHHTCBCBTTTSC
T ss_pred             ccCCcCCchhhhhhcccHHHHHHHHcC--CCCCcCHHHHhcccCC-CCCCCCCChHHHHhHHHhcCccccccCC
Confidence            799999999999999999999999999  7899999999999865 5799999999999999999999999996

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1

Probab=99.95  E-value=7.9e-29  Score=156.26  Aligned_cols=71  Identities=31%  Similarity=0.519  Sum_probs=67.1

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||... +.||+||++..||+|++++||++|++||
T Consensus        17 kdQg~cGsCWAfa~~~~le~~~~i~~~--~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~~~~~~Gi~~e~~yP   87 (213)
T 3ioq_A           17 RNQGGCGSCWTFSSVAAVEGINKIVTG--QLLSLSEQELLDCERR-SYGCRGGFPLYALQYVANSGIHLRQYYP   87 (213)
T ss_dssp             CBCTTSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTT-SCTTBCCCHHHHHHHHHHHCEEBGGGSC
T ss_pred             CcCCCChhHHHHHHHHHHHHHHHHHcC--CCcccCHHHhhhhcCC-CCCCCCCCHHHHHHHHHHcCCCchhccC
Confidence            799999999999999999999999998  7799999999999863 6799999999999999999999999986

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...

Probab=99.95  E-value=1.3e-28  Score=159.56  Aligned_cols=74  Identities=42%  Similarity=0.921  Sum_probs=66.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCC-CCCCCCCCCHHHHHHHHHhcCCCC-------CCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNGINT-------YKP   72 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~-~~~gC~GG~~~~a~~y~~~~Gi~~-------e~~   72 (74)
                      |||+.||||||||++++||++++|++++...+.||+|+|+||+.. .+.||+||++..||+|++++||++       |.+
T Consensus        27 kdQg~CGSCWAfa~~~ale~~~~i~~~~~~~~~LS~q~lvdC~~~~~~~gC~GG~~~~a~~y~~~~Gi~~~~~Y~~~e~~  106 (266)
T 3cbj_A           27 RDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGC  106 (266)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHCGGGGBCTTBCBCHHHHHHHHHHTCBCBCCSTTCCCSS
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhCCCCccccCHHHHHhhccccCCCCCCCCCHHHHHHHHHHhCcCcCccccccccc
Confidence            799999999999999999999999987555799999999999853 357999999999999999999999       666


Q ss_pred             CC
Q psy8704          73 VK   74 (74)
Q Consensus        73 Y~   74 (74)
                      ||
T Consensus       107 ~P  108 (266)
T 3cbj_A          107 RP  108 (266)
T ss_dssp             SC
T ss_pred             cC
Confidence            65

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}

Probab=99.95  E-value=1.4e-28  Score=155.35  Aligned_cols=71  Identities=30%  Similarity=0.523  Sum_probs=66.9

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||.. .+.||+||++..||+|++++||++|++||
T Consensus        17 kdQg~cGsCWAfa~~~~le~~~~i~~~--~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~y~~~~Gi~~e~~yP   87 (214)
T 2bdz_A           17 KNQNPCGSCWAFSTVATIEGINKIITG--QLISLSEQELLDCER-RSHGCDGGYQTTSLQYVVDNGVHTEREYP   87 (214)
T ss_dssp             CBCTTSBCHHHHHHHHHHHHHHHHHHS--CBCCBCHHHHHHHCT-TSCTTBCCCHHHHHHHHHHHCEEBTTTSC
T ss_pred             ccCCCCccHHHHHhHHHHHHHHHHhcC--CccccCHHHHHhhcC-CCCCCCCCCHHHHHHHHHHhCCCccccCC
Confidence            799999999999999999999999988  679999999999985 36799999999999999999999999996

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*

Probab=99.95  E-value=2.8e-28  Score=154.29  Aligned_cols=71  Identities=28%  Similarity=0.526  Sum_probs=66.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||.. .+.||+||++..||+|++++||++|++||
T Consensus        17 kdQg~cGsCWAfa~~~~le~~~~i~~g--~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~~~~~~Gi~~e~~yP   87 (218)
T 1yal_A           17 KNQGACGSCWAFSTIATVEGINKIVTG--NLLELSEQELVDCDK-HSYGCKGGYQTTSLQYVANNGVHTSKVYP   87 (218)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCT-TSCTTBCCCHHHHHHHHHHHCBCBTTTSC
T ss_pred             ccCccchhHHHHHHHHHHHHHHHHhcC--CccccCHHHHHHhcC-CCCCCCCCCHHHHHHHHHHcCCCcccccc
Confidence            799999999999999999999999988  679999999999983 36799999999999999999999999996

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1

Probab=99.95  E-value=2.7e-28  Score=153.88  Aligned_cols=71  Identities=21%  Similarity=0.367  Sum_probs=66.3

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhc-CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~-Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||... +.||+||++..||+|++++ ||++|++||
T Consensus        17 kdQg~cGsCWAfa~~~~le~~~~i~~g--~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~~i~~~~Gi~~e~~yP   88 (214)
T 1m6d_A           17 KDQGMCGSCWAFSVTGNVEGQWFLNQG--TLLSLSEQELLDCDKM-DKACMGGLPSNAYSAIKNLGGLETEDDYS   88 (214)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCSS-SCTTBCCCHHHHHHHHHHHTCBCBTTTSC
T ss_pred             ccCCCCchHHHHHHHHHHHHHHHHHcC--CCcccCHHHHHHhcCC-CCCCCCCCHHHHHHHHHHhcCcccccCcC
Confidence            799999999999999999999999988  7799999999999853 5799999999999999987 899999996

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*

Probab=99.95  E-value=2.9e-28  Score=153.43  Aligned_cols=71  Identities=31%  Similarity=0.476  Sum_probs=66.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhc-CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~-Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||.. .+.||+||++..||+|++++ ||++|++||
T Consensus        17 kdQg~cGsCWAfa~~~~le~~~~i~~g--~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~y~~~~~Gi~~e~~yP   88 (208)
T 1o0e_A           17 KNQGSCGSCWAFSTVSTVESINQIRTG--NLISLSEQELVDCDK-KNHGCLGGAFVFAYQYIINNGGIDTQANYP   88 (208)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCT-TSCTTBCCCHHHHHHHHHHHTCBCBTTTSC
T ss_pred             ccCCCCccHHHHHHHHHHHHHHHHhcC--CceecCHHHhhhhcC-CCCCCCCCCHHHHHHHHHHhCCcCcccccC
Confidence            799999999999999999999999988  789999999999985 36799999999999999998 999999996

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=99.95  E-value=2.1e-28  Score=162.96  Aligned_cols=72  Identities=22%  Similarity=0.460  Sum_probs=67.6

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCC-CCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~-~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      ||||.||||||||++++||++++|+++  .++.||+|+|+||+.. .+.||+||++..||+||+++||++|++||
T Consensus       131 kdQg~CGSCWAFaa~~alE~~~~i~~g--~~~~LSeQ~LvdC~~~~g~~GC~GG~~~~a~~yi~~~Gi~~e~~yP  203 (329)
T 3qt4_A          131 KDQGQCGSSWSFSTTGAVEGQLALQRG--RLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDYGIMSESAYP  203 (329)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCGGGTCCTTBCCCHHHHHHHHHHSCBCBTTTSC
T ss_pred             ccCCCCcChHHHHHHHHHHHHHHHHcC--CcccCCHHHHHHhccccCCCCCCCCChhHHHHHHHHcCCCcHHHee
Confidence            799999999999999999999999998  7899999999999864 25799999999999999999999999996

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1

Probab=99.95  E-value=2.7e-28  Score=155.36  Aligned_cols=72  Identities=29%  Similarity=0.405  Sum_probs=67.2

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhc-CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~-Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||....+.||+||++..||+|++++ ||++|++||
T Consensus        18 kdQg~cGsCWAfa~~~~le~~~~i~~g--~~~~lS~q~l~dC~~~~~~gC~GG~~~~a~~y~~~~~Gi~~e~~yP   90 (229)
T 1s4v_A           18 KDQGQCGSCWAFSTIVAVEGINQIKTN--KLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGITTEANYP   90 (229)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCCSSCCTTBCBCHHHHHHHHHHHTCBCBTTTSC
T ss_pred             ccCccchHHHHHHHHHHHHHHHHHHcC--CCCCcCHHHHHhhCCCCCCCCCCCCHHHHHHHHHHhCCccccccCC
Confidence            799999999999999999999999988  679999999999986446799999999999999998 999999996

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=99.95  E-value=1.8e-28  Score=162.79  Aligned_cols=71  Identities=37%  Similarity=0.547  Sum_probs=67.2

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||+. .+.||+||++..||+||+++||++|++||
T Consensus       123 kdQg~CGSCWAFaa~~alE~~~~i~~g--~~~~lSeq~lvdC~~-~~~gC~GG~~~~a~~yi~~~Gi~~e~~yP  193 (322)
T 1pci_A          123 RHQGSCGSCWAFSAVATVEGINKIRTG--KLVELSEQELVDCER-RSHGCKGGYPPYALEYVAKNGIHLRSKYP  193 (322)
T ss_dssp             CBCTTSCCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHSCT-TSCGGGCBCHHHHHHHHHHHCBCBTTTSC
T ss_pred             cccccCCccHHHHHHHHHHHHHHHHcC--CccccCHHHHHhhcC-CCCCCCCCCHHHHHHHHHHhCCCchhhCC
Confidence            799999999999999999999999998  789999999999986 46899999999999999999999999996

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...

Probab=99.95  E-value=2.8e-28  Score=153.63  Aligned_cols=71  Identities=32%  Similarity=0.520  Sum_probs=66.9

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhc-CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~-Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||.. .+.||+||++..||+|++++ ||++|++||
T Consensus        17 kdQg~cGsCWAfa~~~~~e~~~~~~~~--~~~~lS~q~l~dc~~-~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yP   88 (215)
T 3kwz_A           17 KNQGQCGSCWAFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVS-ENDGCGGGYMTNAFQYVQKNRGIDSEDAYP   88 (215)
T ss_dssp             CBCTTSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCT-TSCTTBCCCHHHHHHHHHHHTCEEBTTTSC
T ss_pred             ccCCCCcHHHHHHHHHHHHHHHHHHcC--CCcccCHHHHHHhcC-CCCCCCCCCHHHHHHHHHHhCCccccccCC
Confidence            799999999999999999999999998  779999999999986 36799999999999999988 999999996

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...

Probab=99.95  E-value=3.4e-28  Score=153.89  Aligned_cols=72  Identities=28%  Similarity=0.490  Sum_probs=66.5

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCC-CCCCCCCCHHHHHHHHH-hcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLC-GFGCNGGFPGMAWRYWV-KNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~-~~gC~GG~~~~a~~y~~-~~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  +.+.||+|+|+||...+ +.||+||++..||+|++ ++||++|++||
T Consensus        17 kdQg~cGsCWAfa~~~~le~~~~i~~g--~~~~lS~q~l~dC~~~~g~~gC~GG~~~~a~~y~~~~~Gi~~e~~yP   90 (220)
T 2xu3_A           17 KNQGQCGSCWAFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYP   90 (220)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTTTTCCTTBCCCHHHHHHHHHHHTCEEBTTTSC
T ss_pred             cccCcccHHHHHHhHHHHHHHHHHhcC--CceecCHHHHHhhccCCCCCCCCCCCHHHHHHHHHHhCCcccccccC
Confidence            799999999999999999999999988  67999999999998643 57999999999999996 67999999996

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1

Probab=99.95  E-value=4.4e-28  Score=153.21  Aligned_cols=71  Identities=35%  Similarity=0.559  Sum_probs=66.6

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhc-CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~-Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||... +.||+||++..||+|++++ ||++|++||
T Consensus        17 kdQg~cGsCWAfa~~~~~e~~~~i~~g--~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~~~~~~~Gi~~e~~yP   88 (215)
T 1iwd_A           17 KNQKQCGSCWAFSAVAAVESINKIRTG--QLISLSEQELVDCDTA-SHGCNGGWMNNAFQYIITNGGIDTQQNYP   88 (215)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTT-SCTTBCCCHHHHHHHHHHHTCBCBTTTSC
T ss_pred             ccCCCCchHHHHHHHHHHHHHHHHhcC--CccccChhHeEECcCC-CCCCCCCCHHHHHHHHHHhCCcccccccC
Confidence            799999999999999999999999988  6799999999999853 5799999999999999997 999999996

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*

Probab=99.95  E-value=4.5e-28  Score=155.80  Aligned_cols=71  Identities=28%  Similarity=0.431  Sum_probs=66.8

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhc-CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~-Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||+. .+.||+||++..||+|++++ ||++|++||
T Consensus        18 kdQg~CGsCWAfa~~~~lE~~~~i~~g--~~~~LS~q~lvdC~~-~~~gC~GG~~~~a~~y~~~~~Gi~~e~~yP   89 (246)
T 2b1m_A           18 KFQGQCGSGWAFSATGAIEAAHAIATG--NLVSLSEQELIDCVD-ESEGCYNGWHYQSFEWVVKHGGIASEADYP   89 (246)
T ss_dssp             CBCCSSCCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCT-TSBTTTBCCHHHHHHHHHHTTCBCBTTTSC
T ss_pred             ccCCCCchHHHHHHHHHHHHHHHHHcC--CCcccCHHHHHhhcC-CCCCCCCCCHHHHHHHHHHhCCcCcccccc
Confidence            799999999999999999999999988  779999999999985 36799999999999999998 999999996

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}

Probab=99.95  E-value=2.3e-28  Score=158.63  Aligned_cols=72  Identities=28%  Similarity=0.411  Sum_probs=67.4

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhc-CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~-Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||....+.||+||++..||+|++++ ||++|++||
T Consensus        20 kdQg~CGSCWAFaa~~alE~~~~i~~g--~~~~LSeQ~lvdC~~~~~~GC~GG~~~~a~~yi~~~~Gi~~e~~yP   92 (262)
T 2fo5_A           20 KDQGKCGSCWAFSTVVSVEGINAIRTG--SLVSLSEQELIDCDTADNDGCQGGLMDNAFEYIKNNGGLITEAAYP   92 (262)
T ss_dssp             CBCTTSCCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCCSSCCGGGCBCHHHHHHHHHHTTCEEBTTTSC
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcC--CCCCcCHHHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCcCchhcCC
Confidence            799999999999999999999999988  679999999999986446799999999999999998 999999996

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1

Probab=99.95  E-value=5.3e-28  Score=153.26  Aligned_cols=71  Identities=32%  Similarity=0.522  Sum_probs=66.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhc-CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~-Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||... +.||+||++..||+|++++ ||++|++||
T Consensus        19 kdQg~cGsCWAfa~~~~le~~~~i~~~--~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~y~~~~~Gi~~e~~yP   90 (221)
T 1cqd_A           19 KNQGGCGSCWAFSTVAAVEGINQIVTG--DLISLSEQQLVDCTTA-NHGCRGGWMNPAFQFIVNNGGINSEETYP   90 (221)
T ss_dssp             CBCTTSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTT-SCTTBCCCHHHHHHHHHHHTSBCBTTTSC
T ss_pred             ccCCCCccHHHHHHHHHHHHHHHHhcC--CeeeeccceeEECCCC-CCCCCCCCHHHHHHHHHHhCCccccccCC
Confidence            799999999999999999999999988  6789999999999864 5799999999999999987 999999996

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=99.95  E-value=2.3e-28  Score=161.58  Aligned_cols=72  Identities=24%  Similarity=0.411  Sum_probs=67.1

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCC-CCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLC-GFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~-~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||+..+ +.||+||++..||+||+.+||++|++||
T Consensus       108 kdQg~CGSCWAfa~~~alE~~~~i~~g--~~~~LS~q~lvdC~~~~~~~gC~GG~~~~a~~yi~~~Gi~~e~~yP  180 (310)
T 2o6x_A          108 KDQGNCGSGWAFSTTGTMEGQYMKNER--TSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQFGLETESSYP  180 (310)
T ss_dssp             CBCCSSCCHHHHHHHHHHHHHHHHHHS--SCCCBCHHHHHHHCGGGTCCGGGCCCHHHHHHHHTTSCBCBTTTSC
T ss_pred             ccCCCCCccHHHHhHHHHHHHHHHHhC--CCcCcCHHHHHHhhhccCCCCCCCCCHHHHHHHHHHCCcCchhcCC
Confidence            799999999999999999999999998  78999999999998542 5799999999999999977999999996

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...

Probab=99.95  E-value=2.5e-28  Score=154.19  Aligned_cols=71  Identities=25%  Similarity=0.368  Sum_probs=64.9

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhc---CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN---GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~---Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||+.. +.||+||++..||+|++++   ||++|++||
T Consensus        17 kdQg~cGsCWAfa~~~ale~~~~i~~~--~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~y~~~~~~gGi~~e~~yP   90 (215)
T 3i06_A           17 KDQGQCGSCWAFSAIGNVECQWFLAGH--PLTNLSEQMLVSCDKT-DSGCSGGLMNNAFEWIVQENNGAVYTEDSYP   90 (215)
T ss_dssp             CBCCSSCCHHHHHHHHHHHHHHHHTTS--CCCCCCHHHHHHHCSS-SCGGGCCCHHHHHHHHHHHSTTEEEC-CCSC
T ss_pred             CCCCCCccHHHHHHHHHHHHHHHHhCC--CCCccCHHHHhccCCC-CCCCCCCCHHHHHHHHHHhccccccccCccC
Confidence            799999999999999999999999877  7899999999999853 6799999999999999985   799999996

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A

Probab=99.95  E-value=8.6e-28  Score=153.98  Aligned_cols=71  Identities=25%  Similarity=0.447  Sum_probs=66.5

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHh-cCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVK-NGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~-~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||... +.||+||++..||+|+++ +||++|++||
T Consensus        34 kdQg~CGsCWAFaa~~alE~~~~i~~~--~~~~lSeq~l~dC~~~-~~gC~GG~~~~a~~yi~~~~Gi~~e~~yP  105 (241)
T 2oul_A           34 KDQKNCGSCWAFSSIGSVESQYAIRKN--KLITLSEQELVDCSFK-NYGCNGGLINNAFEDMIELGGICPDGDYP  105 (241)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHC--CCCCBCHHHHHHHCTT-SCTTBCBCHHHHHHHHHHTTSBCBTTSSC
T ss_pred             ccCccchHHHHHHHHHHHHHHHHHhcC--CCcccCHHHHHhhcCC-CCCCCCCCHHHHHHHHHHhCCcCccccCC
Confidence            799999999999999999999999998  6799999999999864 579999999999999998 5999999996

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0

Probab=99.95  E-value=1.9e-28  Score=155.29  Aligned_cols=71  Identities=24%  Similarity=0.366  Sum_probs=62.5

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhc-CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~-Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  .++.||+|+|+||... +.||+||++..||+|++++ ||++|++||
T Consensus        17 kdQg~cGSCWAfa~~~~le~~~~i~~~--~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~~~~~~~Gi~~e~~yP   88 (222)
T 3u8e_A           17 KDQGACGMCWAFGATGAIEGIDAITTG--RLISVSEQQIVDCDTX-XXXXXGGDADDAFRWVITNGGIASDANYP   88 (222)
T ss_dssp             CBCCSCSSCTTTTHHHHHHHHHHHHHS--CCCCBCHHHHHHHCC-------CCCHHHHHHHHHHHTCBCBTTTSC
T ss_pred             ccCCCCccHHHHHHHHHHHHHHHHHcC--CCcccCHHHHHhccCc-ccccCCCCHHHHHHHHHHcCCccchhcCC
Confidence            799999999999999999999999998  7799999999999875 6799999999999999999 999999996

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*

Probab=99.95  E-value=4.4e-28  Score=153.15  Aligned_cols=72  Identities=32%  Similarity=0.530  Sum_probs=67.1

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCC-CCCCCCCCCHHHHHHHHHhc-CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKN-GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~-~~~gC~GG~~~~a~~y~~~~-Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||+.. .+.||+||++..|++|++++ ||++|++||
T Consensus        18 kdQg~cGsCWAfa~~~~le~~~~i~~~--~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yP   91 (220)
T 8pch_A           18 KNQGSCGSCWTFSTTGALESAVAIATG--KMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYP   91 (220)
T ss_dssp             CBCTTSCCHHHHHHHHHHHHHHHHHHC--CCCCBCHHHHHHHGGGGTCCGGGCCCHHHHHHHHHHHTCEEBTTTSC
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHHcC--CCCCCCHHHHhhCcCccCCCCCCCCCHHHHHHHHHHcCCcCcccccC
Confidence            799999999999999999999999998  7799999999999854 35799999999999999998 999999996

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=99.95  E-value=4.7e-28  Score=161.29  Aligned_cols=73  Identities=29%  Similarity=0.500  Sum_probs=68.1

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhc-CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~-Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++...++.||+|+|+||+.. +.||+||++..||+||+++ ||++|++||
T Consensus       132 kdQg~CGSCWAFaa~~alE~~~~i~~g~~~~~~LSeQ~LvdC~~~-~~GC~GG~~~~a~~yi~~~~Gi~~e~~yP  205 (331)
T 3qj3_A          132 KNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPN-ALGCSGGWMNDAFTYVAQNGGIDSEGAYP  205 (331)
T ss_dssp             CBCCSSCCHHHHHHHHHHHHHHHHHHCTTSCCCBCHHHHHHHCTT-SCGGGCCCHHHHHHHHHHHTCEEBTTTSC
T ss_pred             ccCcccchhhHHHHHHHHHHHHHHHhCCCcccCcCHHHHhhhccC-CCCCCCCCHHHHHHHHHHcCCcCcccccC
Confidence            799999999999999999999999999433899999999999875 6899999999999999998 999999996

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=99.95  E-value=5.6e-28  Score=159.93  Aligned_cols=71  Identities=31%  Similarity=0.504  Sum_probs=66.4

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHh-cCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVK-NGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~-~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||+. .+.||+||++..||+||++ +||++|++||
T Consensus       116 kdQg~CGSCWAFs~~~alE~~~~i~~g--~~~~LSeq~lvdC~~-~~~gC~GG~~~~a~~yi~~~~Gi~~e~~yP  187 (314)
T 1by8_A          116 KNQGQCGSCWAFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVS-ENDGCGGGYMTNAFQYVQKNRGIDSEDAYP  187 (314)
T ss_dssp             CBCCSSSCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHTTCT-TSCGGGCCCSHHHHHHHHHTTCBCBTTTSC
T ss_pred             ccCCCCCCcHHHHHHHHHHHHHHHhcC--CCcccCHHHHHHhcC-CCCCCcCCCHHHHHHHHHHcCCcCcHhhCC
Confidence            799999999999999999999999998  789999999999986 4689999999999999985 5999999996

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=99.94  E-value=5.2e-28  Score=160.10  Aligned_cols=70  Identities=21%  Similarity=0.306  Sum_probs=65.9

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||+.  ..||+||++..||+||+++||++|++||
T Consensus       106 kdQg~CGSCWAFsa~~alE~~~~i~~g--~~~~LSeq~lvdC~~--~~GC~GG~~~~a~~yi~~~Gi~~e~~yP  175 (312)
T 1xkg_A          106 RMQGGCGSAWAFSGVAATESAYLAYRD--QSLDLAEQELVDCAS--QHGCHGDTIPRGIEYIQHNGVVQESYYR  175 (312)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHC--CCCCBCHHHHHHHTC--SSTTBCCCHHHHHHHHHHHCEEBGGGSC
T ss_pred             cccCCCCccHHHHHHHHHHHHHHHHhC--CCCCcCHHHHHhccC--CCCCCCCCHHHHHHHHHHcCCCccccCC
Confidence            799999999999999999999999998  689999999999982  2799999999999999999999999996

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*

Probab=99.94  E-value=1.2e-27  Score=153.53  Aligned_cols=71  Identities=23%  Similarity=0.345  Sum_probs=66.5

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHh-cCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVK-NGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~-~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||... +.||+||++..||+|+++ +||++|++||
T Consensus        36 kdQg~cGsCWAfa~~~alE~~~~i~~~--~~~~lSeq~lvdC~~~-~~gC~GG~~~~a~~y~~~~~Gi~~e~~yP  107 (243)
T 3bwk_A           36 KDQALCGSCWAFSSVGSVESQYAIRKK--ALFLFSEQELVDCSVK-NNGCYGGYITNAFDDMIDLGGLCSQDDYP  107 (243)
T ss_dssp             CBCCSSCCHHHHHHHHHHHHHHHHHHC--SCCCBCHHHHHHHCTT-SCGGGCCCHHHHHHHHHHTTSBCBTTTSC
T ss_pred             ccCCCCchHHHHHHHHHHHHHHHHhcC--CCcccCHHHHHHhcCC-CCCCCCCCHHHHHHHHHHhCCcccccccC
Confidence            799999999999999999999999988  6799999999999864 579999999999999998 5999999996

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=99.94  E-value=5.2e-28  Score=160.18  Aligned_cols=72  Identities=28%  Similarity=0.490  Sum_probs=66.4

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCC-CCCCCCCCHHHHHHHHH-hcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLC-GFGCNGGFPGMAWRYWV-KNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~-~~gC~GG~~~~a~~y~~-~~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||+..+ +.||+||++..||+|++ .+||++|++||
T Consensus       113 kdQg~CGSCWAFsa~~alE~~~~i~~g--~~~~LSeq~lvdC~~~~g~~gC~GG~~~~a~~yi~~~~Gi~~e~~yP  186 (316)
T 1cs8_A          113 KNQGQCGSCWAFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYP  186 (316)
T ss_dssp             CBCCSSSCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCGGGTCCGGGCBCHHHHHHHHHHHTCEEBTTTSC
T ss_pred             CcccCCccHHHHHHHHHHHHHHHHHcC--CCcCcCHHHHHHhccccCCCCCCCCCHHHHHHHHHHhCCcCchhccC
Confidence            799999999999999999999999998  68999999999998542 57999999999999997 56999999996

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0

Probab=99.94  E-value=1e-27  Score=151.71  Aligned_cols=72  Identities=28%  Similarity=0.460  Sum_probs=66.9

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCC-CCCCCCCCHHHHHHHHHh-cCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLC-GFGCNGGFPGMAWRYWVK-NGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~-~~gC~GG~~~~a~~y~~~-~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||.... +.||+||++..|++|+++ +||++|++||
T Consensus        23 kdQg~cGsCWAfa~~~~le~~~~i~~~--~~~~lS~q~l~~c~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yP   96 (224)
T 3f75_A           23 KDQRDCGSCWAFSTTGALEGAHCAKTG--KLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYVLDSGGICSEDAYP   96 (224)
T ss_dssp             CBCCSSSCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCGGGTCCGGGCBCHHHHHHHHHHHTCBCBTTTSC
T ss_pred             ccCCCCccHHHHHHHHHHHHHHHHhcC--CCceeCHHHHhhcccCCCCCCCCCCCHHHHHHHHHHhCCccccccCC
Confidence            799999999999999999999999988  68999999999998642 579999999999999998 6999999996

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=99.94  E-value=1.7e-27  Score=163.46  Aligned_cols=73  Identities=26%  Similarity=0.434  Sum_probs=66.9

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHH-HHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMA-WRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a-~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|++++...+.||+|+|+||+.. +.||+||++..+ ++|++++||++|++||
T Consensus       226 kdQG~CGSCWAFsa~~alE~~~~i~tg~~~~~~LSeQ~LvdC~~~-~~GC~GG~~~~aa~~yi~~~Gi~tE~~yP  299 (441)
T 3pdf_A          226 RNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQY-AQGCEGGFPYLIAGKYAQDFGLVEEACFP  299 (441)
T ss_dssp             CBCTTSBCHHHHHHHHHHHHHHHHHHTTSCCCCBCHHHHHHHCTT-SCTTBCCCHHHHTTHHHHHTCBCBGGGSC
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHhccCCCccccCHHHHHhhccC-CCCCCCCchhHHHHHHHHhcCCCcHHHee
Confidence            799999999999999999999999998554567999999999863 689999999987 8999999999999996

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=99.94  E-value=1.2e-27  Score=158.35  Aligned_cols=72  Identities=32%  Similarity=0.555  Sum_probs=66.5

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhc-CC-CCCCCCCCCHHHHHHHHHh-cCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC-RL-CGFGCNGGFPGMAWRYWVK-NGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~-~~-~~~gC~GG~~~~a~~y~~~-~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||+ .. .+.||+||++..||+|+++ +||++|++||
T Consensus       115 kdQg~CGSCWAfs~~~alE~~~~i~~g--~~~~LSeq~lvdC~~~~~~~~gC~GG~~~~a~~yi~~~~Gi~~e~~yP  189 (315)
T 2c0y_A          115 KYQGSCGAAWAFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYP  189 (315)
T ss_dssp             CBCTTSCCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHSCGGGTCCGGGCBCHHHHHHHHHHHTCEEBTTTSC
T ss_pred             cCcccCCCcHHHHHHHHHHHHHHHHhC--CCcCcCHHHHHhhcccccCCCCCCCCCHHHHHHHHHHhCCcCchhcCC
Confidence            799999999999999999999999998  78999999999998 43 3679999999999999985 6999999996

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X

Probab=99.94  E-value=4.5e-27  Score=151.84  Aligned_cols=72  Identities=11%  Similarity=0.159  Sum_probs=63.0

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCC-CCCCCCCCC-HHHHHHHHHhcC-CCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGF-PGMAWRYWVKNG-INTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~-~~~gC~GG~-~~~a~~y~~~~G-i~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  .++.||+|+|+||+.. .+.||+||. +..++.|++++| |++|++||
T Consensus        26 kdQg~CGSCWAFaa~~alE~~~~i~~~--~~~~LS~Q~lvdC~~~~~~~GC~GG~~~~~~~~~i~~~Ggi~~e~~yP  100 (265)
T 2wbf_X           26 EDQGNCDTSWIFASKYHLETIRCMKGY--EPTKISALYVANCYKGEHKDRCDEGSSPMEFLQIIEDYGFLPAESNYP  100 (265)
T ss_dssp             CBCTTSSCHHHHHHHHHHHHHHHHTTC--CCCCBCHHHHHHCCSSSCCCTTTCCCCHHHHHHHHHHHCCCCBTTTSC
T ss_pred             cCCCCChhHHHHHHHHHHHHHHHHhcC--CCCCcCHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHcCCCCCccccC
Confidence            799999999999999999999999876  6799999999999864 357999996 555568888886 99999996

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...

Probab=99.94  E-value=2.1e-27  Score=149.85  Aligned_cols=72  Identities=32%  Similarity=0.542  Sum_probs=66.0

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhc-CC-CCCCCCCCCHHHHHHHHHh-cCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC-RL-CGFGCNGGFPGMAWRYWVK-NGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~-~~-~~~gC~GG~~~~a~~y~~~-~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||. .. .+.||+||++..|++|+++ +||++|++||
T Consensus        18 kdQg~cGsCWAfa~~~~le~~~~i~~~--~~~~lS~q~l~~c~~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yP   92 (218)
T 3ovx_A           18 KYQGSCGACWAFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYP   92 (218)
T ss_dssp             CBCTTSCCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHSCGGGTCCGGGCCCHHHHHHHHHHHTCEEBTTTSC
T ss_pred             ccCCCCccHHHHHHHHHHHHHHHHHcC--CccccCHHHheeccCCcCCCCCCCCCCHHHHHHHHHHhCCcCcccccC
Confidence            799999999999999999999999988  77999999999998 32 2579999999999999976 5999999996

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A

Probab=99.93  E-value=1.3e-26  Score=151.15  Aligned_cols=72  Identities=26%  Similarity=0.354  Sum_probs=65.7

Q ss_pred             CCCC---CCchHHHHHHHHHHHHHHHHHcCCCc-ceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRA---EMSSDEAFGAVEAMSDRVCIASGGKK-HVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~---~Cgscwafa~~~~~e~~~~i~~~~~~-~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+   .||||||||++++||++++|+++++. .+.||+|+|+||+.  ..||+||++..||+|++++||++|++||
T Consensus        55 kdQg~~~~CGSCWAfa~~~alE~~~~i~~~g~~~~~~LS~Q~lvdC~~--~~gC~GG~~~~a~~yi~~~Gi~~e~~yP  130 (277)
T 1deu_A           55 RNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGN--AGSCEGGNDLSVWDYAHQHGIPDETCNN  130 (277)
T ss_dssp             CBTTCSSCCBCHHHHHHHHHHHHHHHHHTTTCSSCCCBCHHHHHHHSS--SEETBEECHHHHHHHHHHTCBCBGGGSC
T ss_pred             ccCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCcccCHHHHHhCcC--CCCCCCCCHHHHHHHHHHcCCCcCccCC
Confidence            7998   99999999999999999999986543 57999999999985  3799999999999999999999999986

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}

Probab=99.91  E-value=1e-24  Score=147.51  Aligned_cols=72  Identities=13%  Similarity=-0.069  Sum_probs=65.9

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCC-----------CCCCCCCCCHHHHHHHHHhcCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-----------CGFGCNGGFPGMAWRYWVKNGINT   69 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~-----------~~~gC~GG~~~~a~~y~~~~Gi~~   69 (74)
                      |||+.||+|||||++++||+++.++++  ..+.||+|+|+||+..           .+.||+||.+..+++||+++||++
T Consensus        26 knQg~cGsCWaFSa~~~lE~~~~~k~~--~~~~LSeq~Lvdcd~~ekan~~l~~~g~~~gcdGG~~~~a~~~i~k~Givp  103 (383)
T 3pw3_A           26 KNQNRAGTCWCYSSYSFLESELLRMGK--GEYDLSEMFTVYNTYLDRADAAVRTHGDVSFSQGGSFYDALYGMETFGLVP  103 (383)
T ss_dssp             CBCCBSSCHHHHHHHHHHHHHHHHTTC--CCCCBCHHHHHHHHHHHHHHHHHHTTTCSCCCSCCCHHHHHHHHHHTCCCB
T ss_pred             ccCCCCcHHHHHHhHHHHHHHHHHHcC--CCCccChHHHHhhchhhhhhhhhhhccCCCCCCCCCHHHHHHHHHHcCcCc
Confidence            799999999999999999999999877  7899999999999731           136999999999999999999999


Q ss_pred             CCCCC
Q psy8704          70 YKPVK   74 (74)
Q Consensus        70 e~~Y~   74 (74)
                      +++||
T Consensus       104 e~~YP  108 (383)
T 3pw3_A          104 EEEMR  108 (383)
T ss_dssp             GGGSC
T ss_pred             HHhCC
Confidence            99996

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}

Probab=99.89  E-value=6.8e-24  Score=138.86  Aligned_cols=71  Identities=13%  Similarity=-0.048  Sum_probs=61.1

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHh--hhcC---CCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLV--SCCR---LCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~li--dC~~---~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||+++.+ ++  ..+.||+|+|+  +|..   .+..+|.||++..||+|++++||++|++||
T Consensus        70 kdQG~CGSCWAFAa~~alE~~~~~-~g--~~~~lS~q~l~~~~c~~~~~~~~~~c~GG~~~~A~~yi~~~Gi~~e~~yP  145 (291)
T 3ois_A           70 YDQGRIGSCTANALAAAIQFERIH-DK--QSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEWP  145 (291)
T ss_dssp             CBCTTSSCHHHHHHHHHHHHHHHH-TT--CSSCCCBCHHHHHHHHHHHSSCTTSCCCEEHHHHHHHHHHTCCCBGGGSC
T ss_pred             ccCCCCccHHHHHHHHHHHHHHHH-hC--CCCCcCcCHHHHHhhhhhhhcCCCCCCCcCHHHHHHHHHHhCCCCHhhCC
Confidence            799999999999999999999864 45  46789999999  6763   122468999999999999999999999996

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A

Probab=99.86  E-value=2.1e-22  Score=138.67  Aligned_cols=72  Identities=21%  Similarity=0.126  Sum_probs=59.4

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH-cCCCcceecCH----------------HHHhhhcCC-----------CCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIA-SGGKKHVRLSS----------------DDLVSCCRL-----------CGFGCNG   52 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~-~~~~~~~~lS~----------------q~lidC~~~-----------~~~gC~G   52 (74)
                      |||+.||+|||||++++||+.+.++ ++  ..+.||+                |+||||...           .+.||+|
T Consensus        69 knQg~cGsCWaFs~~~~lE~~~~~~~~~--~~~~LSe~yl~~~dklEkan~flq~lvdc~~~~~~~r~v~~l~~~~gcdG  146 (457)
T 2e01_A           69 TNQKSSGRCWLFAATNQLRLNVLSELNL--KEFELSQAYLFFYDKLEKANYFLDQIVSSADQDIDSRLVQYLLAAPTEDG  146 (457)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHTTC--SSCCBCHHHHHHHHHHHHHHHHHHHHHHTTTSCTTSHHHHHHHHCTTCSC
T ss_pred             ccCCCCccchhHHhHHHHHHHHHHHhCC--CceeeCChhhhhhhHHHHHHHHHHHHHHhcCCcccchhhhhhccCCCCCC
Confidence            7999999999999999999999998 55  6799999                788999742           2579999


Q ss_pred             CCHHHHHHHHHhcCCCCCCCCC
Q psy8704          53 GFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus        53 G~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |....++.||+++||+++++||
T Consensus       147 G~~~~a~~~i~kyGivpe~~yP  168 (457)
T 2e01_A          147 GQYSMFLNLVKKYGLIPKDLYG  168 (457)
T ss_dssp             BCHHHHHHHHHHHCCCBGGGSC
T ss_pred             CCHHHHHHHHHHcCccchhhcC
Confidence            9999999999989999999996

>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A

Probab=99.85  E-value=5.5e-22  Score=136.50  Aligned_cols=73  Identities=15%  Similarity=0.072  Sum_probs=65.3

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCH----------------HHHhhhcCC-------------CCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSS----------------DDLVSCCRL-------------CGFGCN   51 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~----------------q~lidC~~~-------------~~~gC~   51 (74)
                      |||+.||+|||||++++||+.+.++.++ ..+.||+                |+||||...             .+.||+
T Consensus        64 knQg~cGsCWaFs~~~~le~~~~~k~~~-~~~~lSe~yl~fwDKlEkan~flq~lidc~~~~~~~d~R~v~~l~~~~gcd  142 (453)
T 2cb5_A           64 TNQKSSGRSWIFSCLNVMRLPFMKKLNI-EEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPAND  142 (453)
T ss_dssp             CBCCBSSCHHHHHHHHHHHHHHHHHTTC-SCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHCTTCS
T ss_pred             ccCCCccchHhhhhHHHHHHHHHHHhcC-CeEeeChHHHHHHHHHHHhhHHHHHHHHHHhccCCcchhhHHHhcCCCCCC
Confidence            7999999999999999999999998432 6799999                999999743             246999


Q ss_pred             CCCHHHHHHHHHhcCCCCCCCCC
Q psy8704          52 GGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus        52 GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      ||....++.||++.||+++++||
T Consensus       143 GG~~~~a~~~i~kyGl~p~~~yP  165 (453)
T 2cb5_A          143 GGQWDMLVNIVEKYGVIPKKCFP  165 (453)
T ss_dssp             CBCHHHHHHHHHHHCCCBGGGSC
T ss_pred             CCChHHHHHHHHHcCccchhhcc
Confidence            99999999999988999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	74
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	8e-10
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	1e-06
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	1e-06
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	2e-06
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	7e-06
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	2e-05
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	3e-05
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	3e-05
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	3e-05
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	7e-05
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	8e-05
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	2e-04
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	0.001
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	0.001
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	0.003
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	0.003

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 8e-10
 Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCR-LCGFGCNGGFPGMAWRYWVKNGI 67
          AFGAVEA+SDR+CI +     V +S++DL++CC  +CG GCNGG+P  AW +W + G+
Sbjct: 32 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGL 89

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-06
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN 65
          AF AV A+  ++ + +G    +   +    S  +    GCNGGF   A++Y + N
Sbjct: 27 AFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDN 81

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score = 41.1 bits (95), Expect = 2e-06
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGIN 68
          AF ++ ++  +  I     K + LS  +LV C         G             GI 
Sbjct: 44 AFSSIGSVESQYAIRKN--KLITLSEQELVDCSFKNYGCNGGLINNAFEDMIELGGIC 99

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score = 39.2 bits (90), Expect = 7e-06
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGI 67
          AF  V A+     I +G    + LS   LV C      GC GG+   A+++ V NG 
Sbjct: 27 AFSTVAAVEGINQIVTG--DLISLSEQQLVDCTT-ANHGCRGGWMNPAFQFIVNNGG 80

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score = 38.5 bits (88), Expect = 2e-05
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG 66
          AF AV A+     I +G  + + LS  +LV C      GCNGG+   A++Y + NG
Sbjct: 27 AFSAVAAVESINKIRTG--QLISLSEQELVDCDT-ASHGCNGGWMNNAFQYIITNG 79

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score = 37.7 bits (86), Expect = 3e-05
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG 66
          AF  + A+     I +   K V LS  +LV C      GCNGG    A+ +  + G
Sbjct: 28 AFSTIVAVEGINQIKTN--KLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRG 81

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 3e-05
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG 66
          AF     +  +  +  G    + LS  +L+ C +     C GG P  A+      G
Sbjct: 27 AFSVTGNVEGQWFLNQG--TLLSLSEQELLDCDK-MDKACMGGLPSNAYSAIKNLG 79

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 7e-05
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG 66
          AF +V A+  ++   +G  K + LS  +LV C       C GG+   A++Y  KN 
Sbjct: 27 AFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVSENDG-CGGGYMTNAFQYVQKNR 79

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score = 36.1 bits (82), Expect = 8e-05
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTY 70
          AF  V  +     I +G    + LS  +LV C +    GC GG    A++Y + NG    
Sbjct: 27 AFSTVSTVESINQIRTG--NLISLSEQELVDCDK-KNHGCLGGAFVFAYQYIINNGGIDT 83

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 2e-04
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCR-LCGFGCNGGFPGMAWRYWVKNG 66
          AF A  A+  ++   +G  K V LS  +LV C R     GCNGGF   A++Y  +NG
Sbjct: 27 AFSATGALEGQMFRKTG--KLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENG 81

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score = 33.4 bits (75), Expect = 0.001
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLC-GFGCNGGFPGMAWRYWVKNG 66
          AF A+  +     I +G    + LS  +L+ C R     GCNGG+    +++ + NG
Sbjct: 27 AFSAIATVEGINKIVTG--VLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINNG 81

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 33.1 bits (74), Expect = 0.001
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYW 62
          AF AV  +     I +G  K V LS  +LV C R       G  P       
Sbjct: 27 AFSAVATVEGINKIRTG--KLVELSEQELVDCERRSHGCKGGYPPYALEYVA 76

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.0 bits (71), Expect = 0.003
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 11  AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTY 70
           A  +  AM+DR+ I   G     L S   V  C      C GG     W Y  ++GI   
Sbjct: 66  AHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNA-GSCEGGNDLSVWDYAHQHGIPDE 124

Query: 71  KP 72
             
Sbjct: 125 TC 126

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 31.9 bits (71), Expect = 0.003
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 2/52 (3%)

Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYW 62
          AF  +  +     I +G    + LS  +LV C +       G          
Sbjct: 27 AFSTIATVEGINKIVTG--NLLELSEQELVDCDKHSYGCKGGYQTTSLQYVA 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	74
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	99.93
d1ppoa_	216	Caricain (protease omega) {Papaya (Carica papaya)	99.91
d1cqda_	216	Proline-specific cysteine protease {Ginger rhizome	99.9
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	99.9
d1gmya_	254	(Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960	99.9
d1yala_	218	Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}	99.89
d1m6da_	214	Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1khqa_	212	Papain {Papaya (Carica papaya) [TaxId: 3649]}	99.88
d2oula1	241	Falcipain 2 {Plasmodium falciparum [TaxId: 5833]}	99.88
d2r6na1	215	(Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960	99.88
g1k3b.1	233	Cathepsin C (dipeptidyl peptidase I), catalytic do	99.88
d1fh0a_	221	(Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960	99.87
d1iwda_	215	Ervatamin B {Adam's apple (Ervatamia coronaria) [T	99.87
d1deua_	275	(Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960	99.86
d1o0ea_	208	Ervatamin C {East indian rosebay (Ervatamia corona	99.86
d1aeca_	218	Actinidin {Chinese gooseberry or kiwifruit (Actini	99.86
g8pch.1	228	Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}	99.86
d2h7ja1	217	(Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960	99.86
d1s4va_	224	Vignain (bean endopeptidase) {Castor bean (Ricinus	99.86
d1me4a_	215	Cruzain {Trypanosoma cruzi [TaxId: 5693]}	99.82
d3gcba_	458	Bleomycin hydrolase {Baker's yeast (Saccharomyces	98.23
d2cb5a_	453	Bleomycin hydrolase {Human (Homo sapiens) [TaxId:	97.9

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=99.93  E-value=6.8e-27  Score=151.93  Aligned_cols=70  Identities=21%  Similarity=0.306  Sum_probs=66.4

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      ||||.||||||||++++||++++|+++  ..+.||+|+|+||..  +.+|.||++..+++|++++||++|++||
T Consensus       103 kdQG~CGsCwAfa~~~~lE~~~~i~~~--~~~~lS~q~lvdC~~--~~~C~gG~~~~a~~~~~~~Gi~~e~~yP  172 (302)
T d1xkga1         103 RMQGGCGSAWAFSGVAATESAYLAYRD--QSLDLAEQELVDCAS--QHGCHGDTIPRGIEYIQHNGVVQESYYR  172 (302)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHC--CCCCBCHHHHHHHTC--SSTTBCCCHHHHHHHHHHHCEEBGGGSC
T ss_pred             eeccccceehhhhhHHhHHHHHHHhcC--CcccchhHHHHhccc--cCccCCCccchhhhhhccCcccchhhcc
Confidence            799999999999999999999999998  788999999999985  5799999999999999999999999996

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.91  E-value=1.2e-24  Score=134.30  Aligned_cols=71  Identities=37%  Similarity=0.547  Sum_probs=66.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      ||||.||||||||++++||++++|+++  ..+.||+|+|+||... ..+|.||.+..+++++++.|+++|++||
T Consensus        17 ~dQg~cGsCwAfa~~~~~e~~~~~~~~--~~~~lS~q~l~~~~~~-~~~~~G~~~~~~~~~~~~~G~~~e~~yP   87 (216)
T d1ppoa_          17 RHQGSCGSCWAFSAVATVEGINKIRTG--KLVELSEQELVDCERR-SHGCKGGYPPYALEYVAKNGIHLRSKYP   87 (216)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCSS-SCTTBCCCHHHHHHHHHHHCBCBTTTSC
T ss_pred             ccCCcCchHHHHHHHHHHHHHHHHHhC--CCCCccHHHHhhhhhc-cCcccccccccccccccccCccccccCC
Confidence            799999999999999999999999998  7789999999999864 5789999999999999999999999996

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

Probab=99.90  E-value=2.9e-24  Score=132.30  Aligned_cols=71  Identities=31%  Similarity=0.482  Sum_probs=63.6

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCC-CCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGI-NTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi-~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++++++  ..+.||+|+|+||... ..||.||++..|++|++++|+ ..|++|+
T Consensus        17 ~dQg~cgsCwAfa~~~~le~~~~~~~~--~~~~lS~q~l~~c~~~-~~gc~Gg~~~~a~~y~~~~g~~~~e~~~p   88 (216)
T d1cqda_          17 KNQGGCGSCWAFSTVAAVEGINQIVTG--DLISLSEQQLVDCTTA-NHGCRGGWMNPAFQFIVNNGGINSEETYP   88 (216)
T ss_dssp             CBCTTSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTT-SCTTBCCCHHHHHHHHHHHTSBCBTTTSC
T ss_pred             ccCCCCchHHHHHHHHHHHHHHHHHhC--CCccccHHHhhhcccc-cCCCCCcchHHHHHHHHhcCCccccccCC
Confidence            799999999999999999999999998  6789999999999864 579999999999999999964 5566664

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.9e-24  Score=140.75  Aligned_cols=72  Identities=29%  Similarity=0.506  Sum_probs=64.0

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCC-CCCCCCCCCHHHHHHHHHhcC-CCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNG-INTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~-~~~gC~GG~~~~a~~y~~~~G-i~~e~~Y~   74 (74)
                      ||||.||||||||+++++|++++|+++  ..+.||+|+|+||+.. .+.+|.||++..||+|++.+| +++|..|+
T Consensus       113 kdQG~CGsCwAfa~~~~~E~~~~i~~~--~~~~lS~Q~lvdC~~~~~~~~c~gg~~~~a~~y~~~~g~~~~e~~~~  186 (316)
T d1cs8a_         113 KNQGQCGSCWAFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYP  186 (316)
T ss_dssp             CBCCSSSCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCGGGTCCGGGCBCHHHHHHHHHHHTCEEBTTTSC
T ss_pred             ccCCCCceeeehhhhHHHHHHHHhhcC--CcccchhhhhhhccccccCCCCCCCchHHHHHHHHhcCccccccccc
Confidence            799999999999999999999999998  7789999999999864 357899999999999999996 56666653

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.7e-24  Score=134.62  Aligned_cols=74  Identities=42%  Similarity=0.910  Sum_probs=67.1

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCC-CCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~-~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||+++.|++++.....||+|+|++|... .+.||.||++..+++++.++|+++|+.|+
T Consensus        22 ~dQg~cGsCwAfA~~~~lEs~~~i~~~~~~~~~lS~~~l~~~~~~~~~~gc~gg~~~~a~~~~~~~G~~~e~~~~   96 (254)
T d1gmya_          22 RDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYE   96 (254)
T ss_dssp             CBCCSSCCHHHHHHHHHHHHHHHHHTTTSSCCCBCHHHHHHHSGGGGBCGGGCBCHHHHHHHHHHTCBCBCCSTT
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHCCCCccccchHHHHhhccccCCCCCCCCcHHHHHHHHHHcCcccccccc
Confidence            799999999999999999999999988666789999999999754 45799999999999999999999998873

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.89  E-value=1.8e-23  Score=129.31  Aligned_cols=71  Identities=28%  Similarity=0.523  Sum_probs=66.3

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||... +.||.|+.+..++.|+++.|+++|++||
T Consensus        17 ~dQg~cGsCwAfa~~~~~e~~~~~~~~--~~~~lS~q~l~~c~~~-~~g~~g~~~~~~~~~~~~~g~~~e~~~p   87 (218)
T d1yala_          17 KNQGACGSCWAFSTIATVEGINKIVTG--NLLELSEQELVDCDKH-SYGCKGGYQTTSLQYVANNGVHTSKVYP   87 (218)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTT-SCTTBCCCHHHHHHHHHHHCBCBTTTSC
T ss_pred             ccCCCCchHHHHHHHHHHHHHHHHHcC--CCcccchhhhhccccc-cCCCcccccchhhhhhhhhcccccccCC
Confidence            799999999999999999999999988  6789999999999864 5799999999999999999999999986

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.9e-23  Score=128.95  Aligned_cols=71  Identities=21%  Similarity=0.367  Sum_probs=64.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcC-CCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG-INTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~G-i~~e~~Y~   74 (74)
                      |||+.||||||||++++||+++.|++.  ..+.||+|+++||... +.+|.||.+..+++|++++| ++.|.+|+
T Consensus        17 ~dQg~cGsCwAfa~~~~le~~~~~~~~--~~~~~S~q~~~~c~~~-~~gc~G~~~~~~~~~~~~~g~~~~e~~~p   88 (214)
T d1m6da_          17 KDQGMCGSCWAFSVTGNVEGQWFLNQG--TLLSLSEQELLDCDKM-DKACMGGLPSNAYSAIKNLGGLETEDDYS   88 (214)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCSS-SCTTBCCCHHHHHHHHHHHTCBCBTTTSC
T ss_pred             ccCCcCccHHHHHHHHHHHHHHHHHcC--CCcccCHHHhcccccc-CCccCCCcchhhHHHHHhCCccccccccc
Confidence            799999999999999999999999988  6789999999999864 57999999999999999985 77887775

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.88  E-value=3.2e-23  Score=126.99  Aligned_cols=71  Identities=30%  Similarity=0.477  Sum_probs=65.8

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      ||||.||||||||++++||++++|+++  ....||+|+++||... ..+|.|+.+..+++|+.++|+++|..|+
T Consensus        17 ~dQg~cGsCwAfa~~~~~e~~~~i~~~--~~~~~S~q~~~~c~~~-~~g~~g~~~~~a~~~~~~~g~~~~~~~p   87 (212)
T d1khqa_          17 KNQGSCGSCWAFSAVVTIEGIIKIRTG--NLNEYSEQELLDCDRR-SYGCNGGYPWSALQLVAQYGIHYRNTYP   87 (212)
T ss_dssp             CBCTTSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTT-SCTTBCBCHHHHHHHHHHTCBCBTTTSC
T ss_pred             ccCCcCchHHHHHHHHHHHHHHHHHcC--CCcccCHHHhhccccc-cCccccccccccccccccccccccccCC
Confidence            799999999999999999999999998  6788999999999864 5689999999999999999999998875

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.4e-23  Score=127.81  Aligned_cols=71  Identities=31%  Similarity=0.485  Sum_probs=64.3

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcC-CCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG-INTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~G-i~~e~~Y~   74 (74)
                      ||||.||||||||+++++|++++++++  ..+.||+|+|++|... ..+|.||.+..|++|++.+| ++++..|+
T Consensus        17 ~dQG~cGsCwAfa~~~~~e~~~~~~~~--~~~~lS~q~l~~c~~~-~~~c~G~~~~~a~~~~~~~g~~~~~~~y~   88 (215)
T d2r6na1          17 KNQGQCGSCWAFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVSE-NDGCGGGYMTNAFQYVQKNRGIDSEDAYP   88 (215)
T ss_dssp             CBCTTSCCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTT-SCGGGCCCHHHHHHHHHHHTCEEBTTTSC
T ss_pred             ccCccChhHHHHHHHHHHHHHHHHHhC--CCccchhhhhhhcccc-cCccCCcchhhHHHHHHhcCccccccCCC
Confidence            799999999999999999999999998  6789999999999864 46899999999999999986 77877764

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.3e-23  Score=126.81  Aligned_cols=72  Identities=35%  Similarity=0.558  Sum_probs=64.8

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCC-CCCCCCCCCHHHHHHHHHhcC-CCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNG-INTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~-~~~gC~GG~~~~a~~y~~~~G-i~~e~~Y~   74 (74)
                      ||||.||||||||++++||+++.++++  ..+.||+|++++|... .+.+|+||++..|++|+.+.| ++++.+|+
T Consensus        17 ~dQG~cGsCwAfA~~~~~e~~~~~~~~--~~~~lS~~~~~~~~~~~~~~~~~gg~~~~a~~~~~~~g~~~~~~~~p   90 (221)
T d1fh0a_          17 KNQKQCGSCWAFSATGALEGQMFRKTG--KLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYP   90 (221)
T ss_dssp             CBCCSSCCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCGGGTCCGGGCCCHHHHHHHHHHHTCEEBTTTSC
T ss_pred             ccCCCCchHHHHHHHHHHHHHHHHHcC--CCcccccceeEEeccccCCcccCCCchhhhhhhhhhcCccccccCcC
Confidence            799999999999999999999999988  6789999999999754 346899999999999999885 78888875

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

Probab=99.87  E-value=1.6e-22  Score=124.66  Aligned_cols=69  Identities=33%  Similarity=0.509  Sum_probs=61.5

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKP   72 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~   72 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|+||... ..+|.|+....|++|++++|.+.+..
T Consensus        17 ~dQg~cGsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~~c~~~-~~~~~G~~~~~a~~~~~~~g~~~~~~   85 (215)
T d1iwda_          17 KNQKQCGSCWAFSAVAAVESINKIRTG--QLISLSEQELVDCDTA-SHGCNGGWMNNAFQYIITNGGIDTQQ   85 (215)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTT-SCTTBCCCHHHHHHHHHHHTCBCBTT
T ss_pred             ccCCCCchHHHHHHHHHHHHHHHHhcC--CCcccChhhheecccC-CCCCCCcchhhHHHHHHhcCeecccc
Confidence            799999999999999999999999988  6789999999999864 57899999999999999997554433

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1e-22  Score=129.66  Aligned_cols=72  Identities=26%  Similarity=0.354  Sum_probs=64.0

Q ss_pred             CCCC---CCchHHHHHHHHHHHHHHHHHcCCCc-ceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCC
Q psy8704           1 MNRA---EMSSDEAFGAVEAMSDRVCIASGGKK-HVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus         1 rdQ~---~Cgscwafa~~~~~e~~~~i~~~~~~-~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      ||||   .||||||||++++||++++|++++.. ...||+|+|++|..  ..+|.||++..+++|+.++|+++|++|+
T Consensus        53 kdQG~~~~CGsCWAfAa~~~lE~~~~i~~~~~~~~~~lS~q~l~~~~~--~~~c~GG~~~~a~~~~~~~G~~~e~~~P  128 (275)
T d1deua_          53 RNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGN--AGSCEGGNDLSVWDYAHQHGIPDETCNN  128 (275)
T ss_dssp             CBTTCSSCCBCHHHHHHHHHHHHHHHHHTTTCSSCCCBCHHHHHHHSS--SEETBEECHHHHHHHHHHTCBCBGGGSC
T ss_pred             ccCCCCCCCcCHHHHHHHHHHHHHHHHHcCCcccccccchhheecccc--ccccCCcccccccchhhccccccccccc
Confidence            6887   79999999999999999999877542 46799999999975  3689999999999999999999999875

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

Probab=99.86  E-value=4.5e-22  Score=121.94  Aligned_cols=71  Identities=31%  Similarity=0.479  Sum_probs=63.1

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhcC-CCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG-INTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~G-i~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++++++  ..+.||+|+|+||... +.+|.||.+..+++++..+| ++++.+|+
T Consensus        17 ~dQg~cGsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~~c~~~-~~~~~g~~~~~~~~~~~~~g~~~~~~~~p   88 (208)
T d1o0ea_          17 KNQGSCGSCWAFSTVSTVESINQIRTG--NLISLSEQELVDCDKK-NHGCLGGAFVFAYQYIINNGGIDTQANYP   88 (208)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCTT-SCTTBCCCHHHHHHHHHHHTCBCBTTTSC
T ss_pred             ccCCCCccHHHHHHHHHHHHHHHHHhC--CCCCcCHHHhhhhccC-CCCCCCccchhhhhhhhhcCccccccCCC
Confidence            799999999999999999999999988  6789999999999864 57999999999999998885 56666654

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

Probab=99.86  E-value=4e-22  Score=122.89  Aligned_cols=72  Identities=29%  Similarity=0.495  Sum_probs=65.1

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCC-CCCCCCCCCHHHHHHHHHhcC-CCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNG-INTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~-~~~gC~GG~~~~a~~y~~~~G-i~~e~~Y~   74 (74)
                      |||+.||||||||++++||+++.|+++  ..+.||+|++++|... .+.+|.|+....++.+++++| ++.|.+|+
T Consensus        17 ~dQg~cGsCwAfA~~~~~e~~~~~~~~--~~~~lS~q~~~~c~~~~~~~~~~G~~~~~~~~~~~~~g~v~~e~~yp   90 (218)
T d1aeca_          17 KSQGECGGCWAFSAIATVEGINKIVTG--VLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINNGGINTEENYP   90 (218)
T ss_dssp             CBCTTSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCCBTTBCTTBCCCHHHHHHHHHHHTCBCBTTTSC
T ss_pred             ccCCCChhHHHHHHHHHHHHHHHHhcC--CCcchhhhhhhhhccccCCcccCCCcccccceeehhCceecCccccC
Confidence            799999999999999999999999998  7789999999999865 346889999999999999985 88998885

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.8e-22  Score=122.80  Aligned_cols=72  Identities=33%  Similarity=0.550  Sum_probs=64.0

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCC--CCCCCCCCCHHHHHHHHHhc-CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL--CGFGCNGGFPGMAWRYWVKN-GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~--~~~gC~GG~~~~a~~y~~~~-Gi~~e~~Y~   74 (74)
                      ||||.||||||||++++||++++|+++  ..+.||+|++++|...  .+.||+||.+..++.++... |++++.+|+
T Consensus        17 ~dQG~cGsCwAfA~~~~~e~~~~i~~~--~~~~~S~~~~~~~~~~~~~~~gc~gg~~~~a~~~~~~~~g~~~~~~~p   91 (217)
T d2h7ja1          17 KYQGSCGACWAFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYP   91 (217)
T ss_dssp             CBCTTSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHSCGGGTCCTTBCCCHHHHHHHHHHHTCEEBTTTSC
T ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHhC--CCCcccHHHhhhhhcccccCCCCCCCcccceeeehhhcccccccccCC
Confidence            799999999999999999999999998  6788999999999864  35799999999999887665 888888875

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=99.86  E-value=5.8e-22  Score=122.44  Aligned_cols=71  Identities=30%  Similarity=0.414  Sum_probs=62.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhc-CCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINTYKPV   73 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~-Gi~~e~~Y   73 (74)
                      ||||.||||||||+++++|+++.|++.  ..+.||+|++++|......+|.||....|+.++.++ |++.|.+|
T Consensus        18 ~dQG~cGsCwAfA~~~~~e~~~~~~~~--~~~~~S~q~l~~c~~~~~~~~~G~~~~~a~~~~~~~g~~~~e~~~   89 (224)
T d1s4va_          18 KDQGQCGSCWAFSTIVAVEGINQIKTN--KLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGITTEANY   89 (224)
T ss_dssp             CBCCSSBCHHHHHHHHHHHHHHHHHHS--CCCCBCHHHHHHHCCSSCCTTBCBCHHHHHHHHHHHTCBCBTTTS
T ss_pred             ccCCcCchHHHHHHHHHHHHHHHHhcC--CCCccchhhhhhccccccccCCCCchhhHhhhHhhcCceeecccc
Confidence            799999999999999999999999988  778999999999987545688999999999999888 56666554

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.82  E-value=7.2e-21  Score=117.14  Aligned_cols=71  Identities=25%  Similarity=0.368  Sum_probs=62.3

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCCCCCCCCCCCHHHHHHHHHhc---CCCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN---GINTYKPVK   74 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~~~~gC~GG~~~~a~~y~~~~---Gi~~e~~Y~   74 (74)
                      |||+.||||||||++++||++++|+++  ..+.||+|+|++|... +.+|.|+....++.++...   +++++.+|+
T Consensus        17 ~dQg~cGsCwAfa~~~~le~~~~i~~~--~~~~ls~q~l~~c~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~yp   90 (215)
T d1me4a_          17 KDQGQCGSCWAFSAIGNVECQWFLAGH--PLTNLSEQMLVSCDKT-DSGCSGGLMNNAFEWIVQENNGAVYTEDSYP   90 (215)
T ss_dssp             CBCTTSSCHHHHHHHHHHHHHHHHTTS--CCCCBCHHHHHHHCTT-SCGGGCCCHHHHHHHHHHHSTTEEEBTTTSC
T ss_pred             ccCCcCccHHHHHHHHHHHHHHHHhcC--CCcccchhhhhhhhcC-CCCCCCCcccccceeeeeccCCccccCcccC
Confidence            799999999999999999999999988  6789999999999864 5788899988888887553   688888885

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

Probab=98.23  E-value=4.3e-07  Score=61.21  Aligned_cols=73  Identities=19%  Similarity=0.074  Sum_probs=58.0

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhcCC---------------------------CCCCCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL---------------------------CGFGCNGG   53 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~~~---------------------------~~~gC~GG   53 (74)
                      .||+.-|-||.||++..|+..+..+.+. ..+.||+.+++.-+..                           ...-.+||
T Consensus        70 tnQ~~SGrCW~FA~ln~lr~~~~~~~~~-~~felSq~Yl~f~dklEKan~fL~~ii~~~~~~~~~R~v~~ll~~~~~DGG  148 (458)
T d3gcba_          70 TNQKSSGRAWLFAATNQLRLNVLSELNL-KEFELSQAYLFFYDKLEKANYFLDQIVSSADQDIDSRLVQYLLAAPTEDGG  148 (458)
T ss_dssp             CBCCBSSCHHHHHHHHHHHHHHHHHTTC-SSCCBCHHHHHHHHHHHHHHHHHHHHHHTTTSCTTSHHHHHHHHCTTCSCB
T ss_pred             ccCCCCcccHHHhChHHHHHHHHHHcCC-CCeeecHHHHHHhhHHHHHHHHHHHHHHhcCCCcchHHHHHHhhcccCCCc
Confidence            5899999999999999999998776553 3589999886544210                           01257899


Q ss_pred             CHHHHHHHHHhcCCCCCCCCC
Q psy8704          54 FPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus        54 ~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      .-..+..-|++.|+++.+.||
T Consensus       149 ~w~m~~nli~KYG~VPk~~yp  169 (458)
T d3gcba_         149 QYSMFLNLVKKYGLIPKDLYG  169 (458)
T ss_dssp             CHHHHHHHHHHHCCCBGGGSC
T ss_pred             cHHHHHHHHHHcCCCcHhhcC
Confidence            999999999989999999885

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=8.4e-06  Score=54.76  Aligned_cols=73  Identities=15%  Similarity=-0.004  Sum_probs=57.8

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHcCCCcceecCHHHHhhhc--------------------CCC---------CCCCC
Q psy8704           1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC--------------------RLC---------GFGCN   51 (74)
Q Consensus         1 rdQ~~Cgscwafa~~~~~e~~~~i~~~~~~~~~lS~q~lidC~--------------------~~~---------~~gC~   51 (74)
                      .||+.-|-||.||++..|+..+..+.+. ..+.||+.+++.=+                    +..         ..-.+
T Consensus        64 tnQk~SGrCW~Fa~LN~lR~~~~k~~~~-~~felSq~Yl~f~dklEKaN~fL~~ii~~~~~~~~~d~R~v~~ll~~p~~D  142 (453)
T d2cb5a_          64 TNQKSSGRSWIFSCLNVMRLPFMKKLNI-EEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPAND  142 (453)
T ss_dssp             CBCCBSSCHHHHHHHHHHHHHHHHHTTC-SCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHCTTCS
T ss_pred             ccCCCCcccHHHhChHHHHHHHHHHcCC-CCeehhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHhhCCCCC
Confidence            4899999999999999999998887663 46899988865211                    100         12578


Q ss_pred             CCCHHHHHHHHHhcCCCCCCCCC
Q psy8704          52 GGFPGMAWRYWVKNGINTYKPVK   74 (74)
Q Consensus        52 GG~~~~a~~y~~~~Gi~~e~~Y~   74 (74)
                      ||.-..+..-|++.||++.+.||
T Consensus       143 GGqw~m~~nli~KYGvVPk~~~p  165 (453)
T d2cb5a_         143 GGQWDMLVNIVEKYGVIPKKCFP  165 (453)
T ss_dssp             CBCHHHHHHHHHHHCCCBGGGSC
T ss_pred             CcchHHHHHHHHHcCcccHhhCC
Confidence            99999999999999999998885