Psyllid ID: psy8713

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MYTQQIRLCGFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGVPKLD
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHccccccccccccEEEEccEEEEcccccccccEEEEEEEEccccccccEEEEEcccccccccccEEEEEccccccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcEcHHHcEcHHHHHHHHHHccEcEccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccEEHHHHcccccccccccEccccccHHEcccccccccEccccccccEEEEcccccccccccccccccccHHHcEEcEcccEEEcccHHHHHHHHHHHccEEEEEEEEHHHHHEEEEEEEEcccccccccHHHHHHHHHEcccccEEEEEEEHHHHHEEEEcEcccEEEEEEEEEEccccccEEEEEEccEcccccEccEEEEEccccHHHcccccEEEEEccc
Coil and Loop (DISEMBL)
mytqqirlcgfgcnggfpgmAWRYWVKSGivsggaygskqaeknslsniprahlkswmgvhpdynlpanrlpeligysevdedlpanfdsrtkwpncptireirdqgscgscwgcrpyeiapcehhvngtrpscdaskghtpkcvrecqenydvpykkdlnfgaksysvssNEKSIMKEIYehgpvegaftvfddlilyksgrffvpgnetTAMSLIKWTIRdntsqlgaegaftvfddlILYKSgkalgghairilgwgedeksKEKYWLIANSwntdwgdnglfKILRgkdecgiessitagvpkld
Flexible Loop (DISEMBL)
mytqqirlCGFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRilgwgedekSKEKYWLIANswntdwgdnGLFKILRgkdecgiessitagvpkld
Low Complexity Region (SEG)
MYTQQIRLCGFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGVPKLD
Disordered region (IsUnstruct)
****QIRLCGFGCNGGFPGMAWRYWVKSGIVSGGAYG***********IPRAHLKSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGT***********PKCVRECQENYDVPYKKDLNFGAKSYS******SIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIE***********
Disordered Region (DISOPRED)
***QQIRLCGFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSWMGVH***************YSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGVPKL*
Disordered Region (DISEMBL)
MYTQQIRLCGFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNG************PKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGVPKLD
Disordered Region (DISPRO)
MYTQQIRLCGFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSWMGVHP************IGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGVPKLD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYTQQIRLCGFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGVPKLD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	309	2.2.26 [Sep-21-2011]
P07858	339	Cathepsin B OS=Homo sapie	yes	N/A	0.504	0.460	0.494	2e-48
P07688	335	Cathepsin B OS=Bos taurus	yes	N/A	0.495	0.456	0.507	2e-48
Q4R5M2	339	Cathepsin B OS=Macaca fas	N/A	N/A	0.504	0.460	0.494	3e-48
Q5R6D1	339	Cathepsin B OS=Pongo abel	yes	N/A	0.504	0.460	0.489	4e-48
A1E295	335	Cathepsin B OS=Sus scrofa	yes	N/A	0.495	0.456	0.502	2e-47
P43233	340	Cathepsin B OS=Gallus gal	yes	N/A	0.508	0.461	0.474	5e-46
P00787	339	Cathepsin B OS=Rattus nor	yes	N/A	0.498	0.454	0.489	5e-46
P10605	339	Cathepsin B OS=Mus muscul	yes	N/A	0.504	0.460	0.484	3e-45
P25807	329	Gut-specific cysteine pro	yes	N/A	0.614	0.577	0.336	3e-37
P25792	340	Cathepsin B-like cysteine	N/A	N/A	0.469	0.426	0.409	6e-36

>sp|P07858|CATB_HUMAN Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/196 (49%), Positives = 123/196 (62%), Gaps = 40/196 (20%)

Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D ++G  SYSVS++E
Sbjct: 178 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE 236

Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAF+V+ D +LYKSG +                             
Sbjct: 237 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 267

Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    + +G+ +GGHAIRILGWG +  +   YWL+ANSWNTDWGDNG FKILRG+D
Sbjct: 268 --------QHVTGEMMGGHAIRILGWGVENGT--PYWLVANSWNTDWGDNGFFKILRGQD 317

Query: 294 ECGIESSITAGVPKLD 309
            CGIES + AG+P+ D
Sbjct: 318 HCGIESEVVAGIPRTD 333

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 1

>sp|P07688|CATB_BOVIN Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 98/193 (50%), Positives = 120/193 (62%), Gaps = 40/193 (20%)

Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D +FG  SYSV++NE
Sbjct: 178 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNE 236

Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAF+V+ D +LYKSG +                             
Sbjct: 237 KEIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 267

Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    + SG+ +GGHAIRILGWG +  +   YWL+ NSWNTDWGDNG FKILRG+D
Sbjct: 268 --------QHVSGEIMGGHAIRILGWGVENGT--PYWLVGNSWNTDWGDNGFFKILRGQD 317

Query: 294 ECGIESSITAGVP 306
            CGIES I AG+P
Sbjct: 318 HCGIESEIVAGMP 330

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|Q4R5M2|CATB_MACFA Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1

 Score =  192 bits (488), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/196 (49%), Positives = 123/196 (62%), Gaps = 40/196 (20%)

Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D ++G  SYSVS++E
Sbjct: 178 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE 236

Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAF+V+ D +LYKSG +                             
Sbjct: 237 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 267

Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    + +G+ +GGHAIRILGWG +  +   YWL+ANSWNTDWGDNG FKILRG+D
Sbjct: 268 --------QHVTGEMMGGHAIRILGWGVENGT--PYWLVANSWNTDWGDNGFFKILRGQD 317

Query: 294 ECGIESSITAGVPKLD 309
            CGIES + AG+P+ D
Sbjct: 318 HCGIESEVVAGIPRTD 333

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Macaca fascicularis (taxid: 9541)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|Q5R6D1|CATB_PONAB Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1

 Score =  191 bits (486), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 96/196 (48%), Positives = 123/196 (62%), Gaps = 40/196 (20%)

Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D ++G  SYSVS++E
Sbjct: 178 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE 236

Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           + IM EIY++GPVEGAF+V+ D +LYKSG +                             
Sbjct: 237 RDIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 267

Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    + +G+ +GGHAIRILGWG +  +   YWL+ANSWNTDWGDNG FKILRG+D
Sbjct: 268 --------QHVTGEMMGGHAIRILGWGVENGT--PYWLVANSWNTDWGDNGFFKILRGQD 317

Query: 294 ECGIESSITAGVPKLD 309
            CGIES + AG+P+ D
Sbjct: 318 HCGIESEVVAGIPRTD 333

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|A1E295|CATB_PIG Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1

 Score =  189 bits (480), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/193 (50%), Positives = 117/193 (60%), Gaps = 40/193 (20%)

Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D +FG  SYS+S NE
Sbjct: 178 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNE 236

Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAFTV+ D + YKSG +                             
Sbjct: 237 KEIMAEIYKNGPVEGAFTVYSDFLQYKSGVY----------------------------- 267

Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    + +G  +GGHAIRILGWG +  +   YWL+ NSWNTDWGDNG FKILRG+D
Sbjct: 268 --------QHVTGDLMGGHAIRILGWGVENGT--PYWLVGNSWNTDWGDNGFFKILRGQD 317

Query: 294 ECGIESSITAGVP 306
            CGIES I AG+P
Sbjct: 318 HCGIESEIVAGIP 330

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|P43233|CATB_CHICK Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1

 Score =  184 bits (468), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 93/196 (47%), Positives = 116/196 (59%), Gaps = 39/196 (19%)

Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GCR Y I PCEHHVNG+RP C    G TP+C R C+  Y   YK+D ++G  SY V  +E
Sbjct: 178 GCRAYTIPPCEHHVNGSRPPCTGEGGETPRCSRHCEPGYSPSYKEDKHYGITSYGVPRSE 237

Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAF V++D ++YKSG +                             
Sbjct: 238 KEIMAEIYKNGPVEGAFIVYEDFLMYKSGVY----------------------------- 268

Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    + SG+ +GGHAIRILGWG +  +   YWL ANSWNTDWG  G FKILRG+D
Sbjct: 269 --------QHVSGEQVGGHAIRILGWGVENGT--PYWLAANSWNTDWGITGFFKILRGED 318

Query: 294 ECGIESSITAGVPKLD 309
            CGIES I AGVP+++
Sbjct: 319 HCGIESEIVAGVPRME 334

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|P00787|CATB_RAT Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2

 Score =  184 bits (468), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 95/194 (48%), Positives = 118/194 (60%), Gaps = 40/194 (20%)

Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GC PY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D ++G  SYSVS +E
Sbjct: 178 GCLPYTIPPCEHHVNGSRPPC-TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSE 236

Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAFTVF D + YKSG +                             
Sbjct: 237 KEIMAEIYKNGPVEGAFTVFSDFLTYKSGVY----------------------------- 267

Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    +++G  +GGHAIRILGWG +  +   YWL+ANSWN DWGDNG FKILRG++
Sbjct: 268 --------KHEAGDVMGGHAIRILGWGIE--NGVPYWLVANSWNVDWGDNGFFKILRGEN 317

Query: 294 ECGIESSITAGVPK 307
            CGIES I AG+P+
Sbjct: 318 HCGIESEIVAGIPR 331

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|P10605|CATB_MOUSE Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2

 Score =  182 bits (462), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 95/196 (48%), Positives = 118/196 (60%), Gaps = 40/196 (20%)

Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GC PY I PCEHHVNG+RP C   +G TP+C + C+  Y   YK+D +FG  SYSVS++ 
Sbjct: 178 GCLPYTIPPCEHHVNGSRPPC-TGEGDTPRCNKSCEAGYSPSYKEDKHFGYTSYSVSNSV 236

Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAFTVF D + YKSG +                             
Sbjct: 237 KEIMAEIYKNGPVEGAFTVFSDFLTYKSGVY----------------------------- 267

Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    +++G  +GGHAIRILGWG +  +   YWL ANSWN DWGDNG FKILRG++
Sbjct: 268 --------KHEAGDMMGGHAIRILGWGVE--NGVPYWLAANSWNLDWGDNGFFKILRGEN 317

Query: 294 ECGIESSITAGVPKLD 309
            CGIES I AG+P+ D
Sbjct: 318 HCGIESEIVAGIPRTD 333

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

>sp|P25807|CPR1_CAEEL Gut-specific cysteine proteinase OS=Caenorhabditis elegans GN=cpr-1 PE=1 SV=2

 Score =  155 bits (393), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 129/288 (44%), Gaps = 98/288 (34%)

Query: 80  VDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCW-----------------GCRPYEIAP 122
           V   +PA FDSRT+W  C +I+ IRDQ +CGSCW                 G +   I+P
Sbjct: 81  VLASVPATFDSRTQWSECKSIKLIRDQATCGSCWAFGAAEMISDRTCIETKGAQQPIISP 140

Query: 123 --------------CE---------------------HHVNGTRP-------SCDASKGH 140
                         CE                     +H  G +P       S +  +  
Sbjct: 141 DDLLSCCGSSCGNGCEGGYPIQALRWWDSKGVVTGGDYHGAGCKPYPIAPCTSGNCPESK 200

Query: 141 TPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYK 200
           TP C   CQ  Y   Y KD +FG  +Y+V  N  SI  EIY +GPVE AF+V++D   YK
Sbjct: 201 TPSCSMSCQSGYSTAYAKDKHFGVSAYAVPKNAASIQAEIYANGPVEAAFSVYEDFYKYK 260

Query: 201 SGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWG 260
           SG +                                      + +GK LGGHAI+I+GWG
Sbjct: 261 SGVY-------------------------------------KHTAGKYLGGHAIKIIGWG 283

Query: 261 EDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGVPKL 308
            +  S   YWL+ANSW  +WG++G FKI RG D+CGIES++ AG  K+
Sbjct: 284 TE--SGSPYWLVANSWGVNWGESGFFKIYRGDDQCGIESAVVAGKAKV 329

Thiol protease. Has a role as a digestive enzyme.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P25792|CYSP_SCHMA Cathepsin B-like cysteine proteinase OS=Schistosoma mansoni PE=2 SV=1

 Score =  151 bits (382), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 81/198 (40%), Positives = 106/198 (53%), Gaps = 53/198 (26%)

Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GC PY    CEHH  G  P C +   +TP+C + CQ  Y  PY +D + G  SY+V ++E
Sbjct: 186 GCEPYPFPKCEHHTKGKYPPCGSKIYNTPRCKQTCQRKYKTPYTQDKHRGKSSYNVKNDE 245

Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K+I KEI ++GPVE +                                            
Sbjct: 246 KAIQKEIMKYGPVEAS-------------------------------------------- 261

Query: 234 FTVFDDLILYKSG-------KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLF 286
           FTV++D + YKSG       +ALGGHAIRI+GWG + K+   YWLIANSWN DWG+NG F
Sbjct: 262 FTVYEDFLNYKSGIYKHITGEALGGHAIRIIGWGVENKTP--YWLIANSWNEDWGENGYF 319

Query: 287 KILRGKDECGIESSITAG 304
           +I+RG+DEC IES + AG
Sbjct: 320 RIVRGRDECSIESEVIAG 337

Thiol protease. Has a role as a digestive enzyme.

Schistosoma mansoni (taxid: 6183)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
194384502	273	unnamed protein product [Homo sapiens]	0.715	0.809	0.447	4e-55
496317	344	Sarcophaga pro-cathepsin B [Sarcophaga p	0.553	0.497	0.538	9e-54
347972086	337	AGAP004533-PA [Anopheles gambiae str. PE	0.527	0.483	0.544	3e-53
47217183	351	unnamed protein product [Tetraodon nigro	0.673	0.592	0.414	4e-53
125981197	338	GA10694 [Drosophila pseudoobscura pseudo	0.553	0.505	0.547	7e-53
312374701	335	hypothetical protein AND_15621 [Anophele	0.527	0.486	0.534	1e-51
195438776	340	GK16352 [Drosophila willistoni] gi|19416	0.553	0.502	0.542	1e-51
195058549	340	GH17748 [Drosophila grimshawi] gi|193896	0.734	0.667	0.395	2e-51
14141821	340	probable cathepsin B-like cysteine prote	0.540	0.491	0.524	4e-51
91078958	334	PREDICTED: similar to cathepsin b [Tribo	0.537	0.497	0.521	5e-51

>gi|194384502|dbj|BAG59411.1| unnamed protein product [Homo sapiens]

 Score =  221 bits (563), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 120/268 (44%), Positives = 160/268 (59%), Gaps = 47/268 (17%)

Query: 44  NSLSNIPRAHLKSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREI 103
           ++  N+  ++LK   G      L   + P+ + ++E D  LPA+FD+R +WP CPTI+EI
Sbjct: 45  HNFYNVDMSYLKRLCGTF----LGGPKPPQRVMFTE-DLKLPASFDAREQWPQCPTIKEI 99

Query: 104 RDQGSCGSCWGCRPYEIAPCEH--HVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLN 161
           RDQGSCGSCW     E        HVNG+RP C   +G TPKC + C+  Y   YK+D +
Sbjct: 100 RDQGSCGSCWAFGAVEAISDRICIHVNGSRPPC-TGEGDTPKCSKICEPGYSPTYKQDKH 158

Query: 162 FGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTI 221
           +G  SYSVS++EK IM EIY++GPVEGAF+V+ D +LYKSG +                 
Sbjct: 159 YGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------- 201

Query: 222 RDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWG 281
                                + +G+ +GGHAIRILGWG +  +   YWL+ANSWNTDWG
Sbjct: 202 --------------------QHVTGEMMGGHAIRILGWGVENGT--PYWLVANSWNTDWG 239

Query: 282 DNGLFKILRGKDECGIESSITAGVPKLD 309
           DNG FKILRG+D CGIES + AG+P+ D
Sbjct: 240 DNGFFKILRGQDHCGIESEVVAGIPRTD 267

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|496317|dbj|BAA04103.1| Sarcophaga pro-cathepsin B [Sarcophaga peregrina]

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 113/210 (53%), Positives = 133/210 (63%), Gaps = 39/210 (18%)

Query: 99  TIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKK 158
           T + I   G  GS  GCRPYEIAPCEHHVNGTRP CD   G TP C  ECQ++YDV YK 
Sbjct: 174 TRKGIVSGGPYGSSQGCRPYEIAPCEHHVNGTRPPCDGEHGKTPSCRHECQKSYDVDYKT 233

Query: 159 DLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIK 218
           D +FG+KSYSV  N K I KEI ++GPVEGAFTV++DLILYK G +              
Sbjct: 234 DKHFGSKSYSVKRNVKDIQKEIMQNGPVEGAFTVYEDLILYKDGVY-------------- 279

Query: 219 WTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNT 278
                                   +  G+ LGGHAIRILGWG + K+   YWLIANSWNT
Sbjct: 280 -----------------------QHVHGRELGGHAIRILGWGVENKT--PYWLIANSWNT 314

Query: 279 DWGDNGLFKILRGKDECGIESSITAGVPKL 308
           DWG+NG FK+LRG+D CGIES+I AG+PK+
Sbjct: 315 DWGNNGFFKMLRGEDHCGIESAIAAGLPKV 344

Source: Sarcophaga peregrina

Species: Sarcophaga peregrina

Genus: Sarcophaga

Family: Sarcophagidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347972086|ref|XP_313835.5| AGAP004533-PA [Anopheles gambiae str. PEST] gi|333469165|gb|EAA09183.5| AGAP004533-PA [Anopheles gambiae str. PEST]

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 133/202 (65%), Gaps = 39/202 (19%)

Query: 107 GSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKS 166
           G  GS  GC+PY IAPCEHHVNGTRPSC+   G TPKCV++CQE+Y+VPY+KD  FGA S
Sbjct: 175 GPFGSNLGCQPYAIAPCEHHVNGTRPSCEGEGGKTPKCVKKCQESYNVPYQKDKRFGASS 234

Query: 167 YSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTS 226
           YS++ +E  I KEI  +GPVEGAFTV++DL+ YK G +                      
Sbjct: 235 YSIARHEAQIQKEIMTNGPVEGAFTVYEDLLHYKEGVY---------------------- 272

Query: 227 QLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLF 286
                           + +GK LGGHAIRILGWG +  +  KYWLIANSWN+DWGDNG F
Sbjct: 273 ---------------QHVTGKMLGGHAIRILGWGVENGT--KYWLIANSWNSDWGDNGFF 315

Query: 287 KILRGKDECGIESSITAGVPKL 308
           KILRG+D  GIESSI+AG+PKL
Sbjct: 316 KILRGEDHLGIESSISAGLPKL 337

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|47217183|emb|CAG11019.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 149/299 (49%), Gaps = 91/299 (30%)

Query: 9   CGFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSWMGVHPDYNLPA 68
           CG GCNGG+P  AW +WV  G+VSGG Y S       +  I  +     + V  D+  P 
Sbjct: 144 CGMGCNGGYPSSAWNFWVSDGLVSGGLYDSH------IGRIQVSLCVLLLAVDRDFVSP- 196

Query: 69  NRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVN 128
                                                        GCRPY I PCEHHVN
Sbjct: 197 ---------------------------------------------GCRPYTIPPCEHHVN 211

Query: 129 GTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEG 188
           G+RPSC    G TP+C+  C+  Y   YK+D +FG  SYSVSS E  I +EIY++GPVEG
Sbjct: 212 GSRPSCSGEGGDTPECIFRCEAGYSPSYKQDKHFGKTSYSVSSEEDEIKQEIYKNGPVEG 271

Query: 189 AFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKA 248
           AFTV++D +LYKSG +                                      + SG A
Sbjct: 272 AFTVYEDFVLYKSGVY-------------------------------------QHVSGSA 294

Query: 249 LGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGVPK 307
           LGGHAI++LGWGE+  +   YWL ANSWNTDWGDNG FKILRG D CGIES I AG PK
Sbjct: 295 LGGHAIKMLGWGEE--NGVPYWLCANSWNTDWGDNGFFKILRGADHCGIESEIVAGNPK 351

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|125981197|ref|XP_001354605.1| GA10694 [Drosophila pseudoobscura pseudoobscura] gi|54642915|gb|EAL31659.1| GA10694 [Drosophila pseudoobscura pseudoobscura]

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 115/210 (54%), Positives = 131/210 (62%), Gaps = 39/210 (18%)

Query: 99  TIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKK 158
           T + I   G  GS  GCRPYEIAPCEHHVNGTRP C  S G TP C  +CQ +Y V Y K
Sbjct: 168 TRKGIVSGGPYGSTQGCRPYEIAPCEHHVNGTRPPC--SHGSTPSCQHKCQASYSVEYAK 225

Query: 159 DLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIK 218
           D NFG+KSYSV  N   I +EI  +GPVEGAFTV++DLILYKSG +              
Sbjct: 226 DKNFGSKSYSVRRNVAEIQQEIMTNGPVEGAFTVYEDLILYKSGVY-------------- 271

Query: 219 WTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNT 278
                                   ++ GK LGGHAIRILGWG   +SK  YWLI NSWNT
Sbjct: 272 -----------------------QHEHGKELGGHAIRILGWGVWGESKVPYWLIGNSWNT 308

Query: 279 DWGDNGLFKILRGKDECGIESSITAGVPKL 308
           DWGDNG F+ILRG+D CGIESSI+AG+PKL
Sbjct: 309 DWGDNGFFRILRGQDHCGIESSISAGLPKL 338

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374701|gb|EFR22198.1| hypothetical protein AND_15621 [Anopheles darlingi]

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 130/202 (64%), Gaps = 39/202 (19%)

Query: 107 GSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKS 166
           G  GS  GC+PY IAPCEHHVNGTRPSC+   G TPKCV++CQ++Y VPY KD  +G+KS
Sbjct: 173 GPFGSNLGCQPYAIAPCEHHVNGTRPSCEGEGGKTPKCVKKCQDSYTVPYAKDKRYGSKS 232

Query: 167 YSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTS 226
           YS+  +E  I KEI  +GPVEGAFTV++DL+ YK G +                      
Sbjct: 233 YSIPRHEDQIRKEIMTNGPVEGAFTVYEDLLHYKEGVY---------------------- 270

Query: 227 QLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLF 286
                           + +GK LGGHAIRILGWG +  +  KYWLIANSWN+DWGDNG F
Sbjct: 271 ---------------QHVTGKMLGGHAIRILGWGVENNT--KYWLIANSWNSDWGDNGFF 313

Query: 287 KILRGKDECGIESSITAGVPKL 308
           KILRG+D  GIESSI AG+PKL
Sbjct: 314 KILRGEDHLGIESSIAAGLPKL 335

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195438776|ref|XP_002067308.1| GK16352 [Drosophila willistoni] gi|194163393|gb|EDW78294.1| GK16352 [Drosophila willistoni]

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 114/210 (54%), Positives = 131/210 (62%), Gaps = 39/210 (18%)

Query: 99  TIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKK 158
           T + I   G+ GS  GCRPYEI PCEHHVNGTRP C  S G TP+C   C+ +Y V YKK
Sbjct: 170 TRKGIVSGGNFGSQQGCRPYEIEPCEHHVNGTRPPC--SSGSTPRCQHVCESSYKVDYKK 227

Query: 159 DLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIK 218
           D NFG+KSYS+ +N   I KEI  +GPVEGAFTV++DLILYKSG +              
Sbjct: 228 DKNFGSKSYSIKNNVLDIQKEIMNNGPVEGAFTVYEDLILYKSGVY-------------- 273

Query: 219 WTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNT 278
                                   +  GK LGGHAIRILGWG     K  YWLIANSWNT
Sbjct: 274 -----------------------EHVHGKELGGHAIRILGWGVWGDEKIPYWLIANSWNT 310

Query: 279 DWGDNGLFKILRGKDECGIESSITAGVPKL 308
           DWGDNG F+I+RGKD CGIESSI+AG+PKL
Sbjct: 311 DWGDNGFFRIVRGKDHCGIESSISAGLPKL 340

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195058549|ref|XP_001995463.1| GH17748 [Drosophila grimshawi] gi|193896249|gb|EDV95115.1| GH17748 [Drosophila grimshawi]

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/334 (39%), Positives = 166/334 (49%), Gaps = 107/334 (32%)

Query: 43  KNSLSNIPRAHLKSWMGVHPD---YNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPT 99
           +N  + +   H+++ MGVHPD   + LP  R  EL+G    D+DLP  FDS   WPNCPT
Sbjct: 46  RNFDAAVSEHHIRALMGVHPDSHKFTLPEKR--ELLGADGEDKDLPEEFDSSKNWPNCPT 103

Query: 100 IREIRDQGSCGSCWGCRPYE----------------------IAPCEHH----VNGTRP- 132
           IREIRDQGSCGSCW     E                      +  C H      NG  P 
Sbjct: 104 IREIRDQGSCGSCWAFGAVEAMSDRVCIHSNATVNFHFSADDLVTCCHTCGFGCNGGFPG 163

Query: 133 ---------------SCDASKGHTPKCVRECQENYDVP---------------------- 155
                          S ++++G  P  V  C+ + D P                      
Sbjct: 164 AAWSYWTTRGIVSGGSYNSTEGCRPYEVEPCEHHVDGPRPPCHSGSTPHCKHQCQPNYSV 223

Query: 156 -YKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAM 214
            Y+KD +FGA SYS++ N ++I +EI  +GPVEGAFTV++DLILYK+G +          
Sbjct: 224 DYEKDKHFGASSYSINRNPRNIQREIMTNGPVEGAFTVYEDLILYKTGVY---------- 273

Query: 215 SLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIAN 274
                                       +  GK LGGHAIRI+GWG   +SK  YWLIAN
Sbjct: 274 ---------------------------QHVHGKQLGGHAIRIIGWGVWGESKVPYWLIAN 306

Query: 275 SWNTDWGDNGLFKILRGKDECGIESSITAGVPKL 308
           SWNTDWGDNG F+ILRGKD CGIES I+AG+PKL
Sbjct: 307 SWNTDWGDNGFFRILRGKDHCGIESQISAGLPKL 340

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|14141821|gb|AAK07477.2|AF329480_1 probable cathepsin B-like cysteine proteinase precursor [Glossina morsitans morsitans] gi|289743431|gb|ADD20463.1| putative cathepsin B-like cysteine proteinase precursor [Glossina morsitans morsitans]

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 108/206 (52%), Positives = 131/206 (63%), Gaps = 39/206 (18%)

Query: 103 IRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNF 162
           I   G  GS  GCRPYEIAPCEHHVNGTRP C+   G TP+C  +CQ +Y V YK D +F
Sbjct: 174 IVSGGPYGSSQGCRPYEIAPCEHHVNGTRPPCEKEYGKTPRCQHKCQASYKVDYKTDKHF 233

Query: 163 GAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIR 222
           G+++YS+S N   I +EI  HGPVEGAFTV++DLILYK G                    
Sbjct: 234 GSRAYSISKNVHDIQEEIMTHGPVEGAFTVYEDLILYKDG-------------------- 273

Query: 223 DNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGD 282
                        V++ +     GK LGGHAIRI+GWG ++     YWL+ANSWNTDWG+
Sbjct: 274 -------------VYEHV----HGKELGGHAIRIIGWGVEKDI--PYWLVANSWNTDWGN 314

Query: 283 NGLFKILRGKDECGIESSITAGVPKL 308
           NG FKILRGKD CGIESSI+AG+PK+
Sbjct: 315 NGFFKILRGKDHCGIESSISAGLPKI 340

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078958|ref|XP_974220.1| PREDICTED: similar to cathepsin b [Tribolium castaneum] gi|270004841|gb|EFA01289.1| cathepsin B precursor [Tribolium castaneum]

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 107/205 (52%), Positives = 129/205 (62%), Gaps = 39/205 (19%)

Query: 103 IRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNF 162
           I   GS GS  GCRPYEIAPCEHHVNGTRP C      TP C ++C++ Y+VPYKKD NF
Sbjct: 166 IVSGGSFGSNQGCRPYEIAPCEHHVNGTRPPCTGDDNKTPSCKQQCEKGYNVPYKKDKNF 225

Query: 163 GAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIR 222
           G ++YS+SS  + I KEI  +GPVEGAF V++DL+ YK G +                  
Sbjct: 226 GKEAYSISSEVQQIQKEIMTNGPVEGAFEVYEDLLSYKKGVY------------------ 267

Query: 223 DNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGD 282
                               +  G+ALGGHAIRILGWG ++ +   YWLIANSWN+DWGD
Sbjct: 268 -------------------QHVKGEALGGHAIRILGWGTEKGT--PYWLIANSWNSDWGD 306

Query: 283 NGLFKILRGKDECGIESSITAGVPK 307
           NG FKILRG+D CGIESSI AG+PK
Sbjct: 307 NGTFKILRGEDHCGIESSIVAGIPK 331

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
FB|FBgn0030521	340	CtsB1 "Cathepsin B1" [Drosophi	0.394	0.358	0.539	3.8e-30
UNIPROTKB|F1N9D7	340	CTSB "Cathepsin B" [Gallus gal	0.411	0.373	0.461	2e-45
UNIPROTKB|E2R6Q7	339	CTSB "Uncharacterized protein"	0.359	0.327	0.530	8.6e-45
UNIPROTKB|A1E295	335	CTSB "Cathepsin B" [Sus scrofa	0.359	0.331	0.521	1.4e-44
UNIPROTKB|P07858	339	CTSB "Cathepsin B" [Homo sapie	0.359	0.327	0.513	1.8e-44
UNIPROTKB|P43233	340	CTSB "Cathepsin B" [Gallus gal	0.411	0.373	0.453	2.9e-44
ZFIN|ZDB-GENE-040426-2650	330	ctsba "cathepsin B, a" [Danio	0.288	0.269	0.573	5.2e-43
UNIPROTKB|Q6IN22	339	Ctsb "Cathepsin B" [Rattus nor	0.414	0.377	0.466	2.2e-27
RGD|621509	339	Ctsb "cathepsin B" [Rattus nor	0.414	0.377	0.466	2.2e-27
ZFIN|ZDB-GENE-070323-1	326	ctsbb "capthepsin B, b" [Danio	0.359	0.340	0.504	2.5e-39

FB|FBgn0030521 CtsB1 "Cathepsin B1" [Drosophila melanogaster (taxid:7227)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 68/126 (53%), Positives = 82/126 (65%)

Query:    99 TIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKK 158
             T + I   G  GS  GCRPYEI+PCEHHVNGTRP C A  G TPKC   CQ  Y V Y K
Sbjct:   169 TRKGIVSGGPYGSNQGCRPYEISPCEHHVNGTRPPC-AHGGRTPKCSHVCQSGYTVDYAK 227

Query:   159 DLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRF-FVPGNETT--AMS 215
             D +FG+KSYSV  N + I +EI  +GPVEGAFTV++DLILYK G +    G E    A+ 
Sbjct:   228 DKHFGSKSYSVRRNVREIQEEIMTNGPVEGAFTVYEDLILYKDGVYQHEHGKELGGHAIR 287

Query:   216 LIKWTI 221
             ++ W +
Sbjct:   288 ILGWGV 293

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0048102 "autophagic cell death" evidence=IEP

GO:0006508 "proteolysis" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

UNIPROTKB|F1N9D7 CTSB "Cathepsin B" [Gallus gallus (taxid:9031)]

 Score = 319 (117.4 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
 Identities = 60/130 (46%), Positives = 81/130 (62%)

Query:    99 TIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKK 158
             T R +   G   S  GCRPY I PCEHHVNG+RP C    G TP+C R C+  Y   YK+
Sbjct:   163 TERGLVSGGLYDSHVGCRPYTIPPCEHHVNGSRPPCTGEGGETPRCSRHCEPGYSPSYKE 222

Query:   159 DLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRF-FVPGNETT--AMS 215
             D ++G  SY V  +EK IM EIY++GPVEGAF V++D ++YKSG +  V G +    A+ 
Sbjct:   223 DKHYGITSYGVPRSEKEIMAEIYKNGPVEGAFIVYEDFLMYKSGVYQHVSGEQVGGHAIR 282

Query:   216 LIKWTIRDNT 225
             ++ W + + T
Sbjct:   283 ILGWGVENGT 292

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

UNIPROTKB|E2R6Q7 CTSB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 327 (120.2 bits), Expect = 8.6e-45, Sum P(2) = 8.6e-45
 Identities = 61/115 (53%), Positives = 77/115 (66%)

Query:   114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
             GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D ++G  SYSVS NE
Sbjct:   178 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKICEPGYSPSYKEDKHYGCSSYSVSDNE 236

Query:   174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRF-FVPGNETT--AMSLIKWTIRDNT 225
             K IM EIY++GPVE AFTV+ D +LYKSG +  V G      A+ ++ W + D T
Sbjct:   237 KEIMAEIYKNGPVEAAFTVYSDFLLYKSGVYQHVTGEMMGGHAVRILGWGVEDGT 291

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

UNIPROTKB|A1E295 CTSB "Cathepsin B" [Sus scrofa (taxid:9823)]

 Score = 322 (118.4 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 60/115 (52%), Positives = 78/115 (67%)

Query:   114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
             GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D +FG  SYS+S NE
Sbjct:   178 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNE 236

Query:   174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRF-FVPGNETT--AMSLIKWTIRDNT 225
             K IM EIY++GPVEGAFTV+ D + YKSG +  V G+     A+ ++ W + + T
Sbjct:   237 KEIMAEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGT 291

GO:0005615 "extracellular space" evidence=IDA

GO:0042470 "melanosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

UNIPROTKB|P07858 CTSB "Cathepsin B" [Homo sapiens (taxid:9606)]

 Score = 318 (117.0 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 59/115 (51%), Positives = 79/115 (68%)

Query:   114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
             GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D ++G  SYSVS++E
Sbjct:   178 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE 236

Query:   174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRF-FVPGNETT--AMSLIKWTIRDNT 225
             K IM EIY++GPVEGAF+V+ D +LYKSG +  V G      A+ ++ W + + T
Sbjct:   237 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGT 291

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0006508 "proteolysis" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEP

GO:0008234 "cysteine-type peptidase activity" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005622 "intracellular" evidence=TAS

GO:0036021 "endolysosome lumen" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

GO:0008233 "peptidase activity" evidence=IDA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IDA

GO:0005615 "extracellular space" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|P43233 CTSB "Cathepsin B" [Gallus gallus (taxid:9031)]

 Score = 311 (114.5 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 59/130 (45%), Positives = 80/130 (61%)

Query:    99 TIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKK 158
             T R +   G   S  GCR Y I PCEHHVNG+RP C    G TP+C R C+  Y   YK+
Sbjct:   163 TERGLVSGGLYDSHVGCRAYTIPPCEHHVNGSRPPCTGEGGETPRCSRHCEPGYSPSYKE 222

Query:   159 DLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRF-FVPGNETT--AMS 215
             D ++G  SY V  +EK IM EIY++GPVEGAF V++D ++YKSG +  V G +    A+ 
Sbjct:   223 DKHYGITSYGVPRSEKEIMAEIYKNGPVEGAFIVYEDFLMYKSGVYQHVSGEQVGGHAIR 282

Query:   216 LIKWTIRDNT 225
             ++ W + + T
Sbjct:   283 ILGWGVENGT 292

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

ZFIN|ZDB-GENE-040426-2650 ctsba "cathepsin B, a" [Danio rerio (taxid:7955)]

 Score = 300 (110.7 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 51/89 (57%), Positives = 64/89 (71%)

Query:   114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
             GCRPY I PCEHHVNG+RP C    G TP C  +C+  Y   YK+D +FG  SYSV SN+
Sbjct:   176 GCRPYTIEPCEHHVNGSRPPCTGEGGDTPNCDMKCEPGYSPLYKEDKHFGKTSYSVPSNQ 235

Query:   174 KSIMKEIYEHGPVEGAFTVFDDLILYKSG 202
               IM E++++GPVE AFTV++D +LYKSG
Sbjct:   236 NGIMAELFKNGPVEAAFTVYEDFLLYKSG 264

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0031101 "fin regeneration" evidence=IEP

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q6IN22 Ctsb "Cathepsin B" [Rattus norvegicus (taxid:10116)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 62/133 (46%), Positives = 81/133 (60%)

Query:    94 WPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYD 153
             W N  T + +   G   S  GC PY I PCEHHVNG+RP C   +G TPKC + C+  Y 
Sbjct:   159 W-NFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGSRPPC-TGEGDTPKCNKMCEAGYS 216

Query:   154 VPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETT- 212
               YK+D ++G  SYSVS +EK IM EIY++GPVEGAFTVF D + YKSG +     +   
Sbjct:   217 TSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMG 276

Query:   213 --AMSLIKWTIRD 223
               A+ ++ W I +
Sbjct:   277 GHAIRILGWGIEN 289

GO:0050790 "regulation of catalytic activity" evidence=IEA

RGD|621509 Ctsb "cathepsin B" [Rattus norvegicus (taxid:10116)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 62/133 (46%), Positives = 81/133 (60%)

Query:    94 WPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYD 153
             W N  T + +   G   S  GC PY I PCEHHVNG+RP C   +G TPKC + C+  Y 
Sbjct:   159 W-NFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGSRPPC-TGEGDTPKCNKMCEAGYS 216

Query:   154 VPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETT- 212
               YK+D ++G  SYSVS +EK IM EIY++GPVEGAFTVF D + YKSG +     +   
Sbjct:   217 TSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMG 276

Query:   213 --AMSLIKWTIRD 223
               A+ ++ W I +
Sbjct:   277 GHAIRILGWGIEN 289

GO:0004175 "endopeptidase activity" evidence=IMP;IDA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA;ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO;IDA

GO:0005764 "lysosome" evidence=IEA;ISO;IDA

GO:0006508 "proteolysis" evidence=IEA;IEP;ISO;IMP;IDA;TAS

GO:0006914 "autophagy" evidence=IEP

GO:0006950 "response to stress" evidence=IEP

GO:0007283 "spermatogenesis" evidence=IEP

GO:0007519 "skeletal muscle tissue development" evidence=IEP

GO:0008233 "peptidase activity" evidence=ISO

GO:0008234 "cysteine-type peptidase activity" evidence=ISO

GO:0009611 "response to wounding" evidence=IEP

GO:0009612 "response to mechanical stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0014075 "response to amine stimulus" evidence=IEP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0030984 "kininogen binding" evidence=IPI

GO:0032403 "protein complex binding" evidence=IPI

GO:0034097 "response to cytokine stimulus" evidence=IEP

GO:0042277 "peptide binding" evidence=IDA

GO:0042383 "sarcolemma" evidence=IDA

GO:0042470 "melanosome" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043434 "response to peptide hormone stimulus" evidence=IEP

GO:0043621 "protein self-association" evidence=IDA

GO:0045471 "response to ethanol" evidence=IEP

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;IDA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:0070670 "response to interleukin-4" evidence=IEP

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA;ISO

GO:0005901 "caveola" evidence=IDA

ZFIN|ZDB-GENE-070323-1 ctsbb "capthepsin B, b" [Danio rerio (taxid:7955)]

 Score = 307 (113.1 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
 Identities = 58/115 (50%), Positives = 77/115 (66%)

Query:   114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
             GCRPY IAPCEHHVNGTRP C   +  TPKC   C   Y VPYK+D +FG+K Y+V S++
Sbjct:   172 GCRPYSIAPCEHHVNGTRPPCSGEQD-TPKCTGVCIPKYSVPYKQDKHFGSKVYNVPSDQ 230

Query:   174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRF-FVPGNETT--AMSLIKWTIRDNT 225
             + IM E+Y +GPVE AFTV++D  LYKSG +  + G+     A+ ++ W   + T
Sbjct:   231 QQIMTELYTNGPVEAAFTVYEDFPLYKSGVYQHLTGSALGGHAVKILGWGEENGT 285

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A1E295	CATB_PIG	3, ., 4, ., 2, 2, ., 1	0.5025	0.4951	0.4567	yes	N/A
P07688	CATB_BOVIN	3, ., 4, ., 2, 2, ., 1	0.5077	0.4951	0.4567	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22.1	0.824
3rd Layer	3.4.22	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	309
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	2e-71
cd02621	243	cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al	1e-29
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	2e-29
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	1e-21
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	3e-21
PTZ00049	693	PTZ00049, PTZ00049, cathepsin C-like protein; Prov	1e-17
cd02619	223	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS	3e-16
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	3e-13
cd02698	239	cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th	7e-10
PTZ00364	548	PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs	1e-08
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	2e-08
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	6e-07
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	7e-07
COG4870	372	COG4870, COG4870, Cysteine protease [Posttranslati	1e-06
PTZ00462	1004	PTZ00462, PTZ00462, Serine-repeat antigen protein;	2e-06
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	6e-06
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	3e-04
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	5e-04

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score =  220 bits (563), Expect = 2e-71
 Identities = 100/282 (35%), Positives = 128/282 (45%), Gaps = 108/282 (38%)

Query: 85  PANFDSRTKWPNCPTIREIRDQGS------------------------------------ 108
           P +FD+R KWPNC +I EIRDQG+                                    
Sbjct: 1   PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLS 60

Query: 109 -CGSC------------W-----------GCRPYEIAPCEHHVNGTRPSCDASKGHTPKC 144
            C  C            W           GC+PY I PC HH  G  P C      TP C
Sbjct: 61  CCSGCGDGCNGGYPDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPPPCCG-----TPYC 115

Query: 145 VRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRF 204
             +CQ+  +  Y++D + G  +YSV S+E  IMKEI  +GPV+ AFTV++D + YKSG  
Sbjct: 116 TPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLYYKSG-- 173

Query: 205 FVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYK--SGKALGGHAIRILGWGED 262
                                                +Y+  SGK LGGHA++I+GWG +
Sbjct: 174 -------------------------------------VYQHTSGKQLGGHAVKIIGWGVE 196

Query: 263 EKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAG 304
                 YWL ANSW TDWG+NG F+ILRG +ECGIES + AG
Sbjct: 197 NG--VPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVAG 236

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

 Score =  112 bits (282), Expect = 1e-29
 Identities = 76/267 (28%), Positives = 102/267 (38%), Gaps = 69/267 (25%)

Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCWGC-------RPYEIAPCEHHVNGTRP---- 132
           LP +FD          +  +R+QG CGSC+             IA  +    G +P    
Sbjct: 1   LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSP 60

Query: 133 ----SCDA-SKG-------------------------HTPKCVREC---QENYDVPYKKD 159
               SC   S+G                         +T    R C          Y  D
Sbjct: 61  QHVLSCSQYSQGCDGGFPFLVGKFAEDFGIVTEDYFPYTADDDRPCKASPSECRRYYFSD 120

Query: 160 LNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKW 219
            N+    Y  + NE  +  EIY +GP+  AF V+ D   YK G +               
Sbjct: 121 YNYVGGCYGCT-NEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHH------------- 166

Query: 220 TIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTD 279
           T  D  S    +  F  F+          L  HA+ ++GWGEDE   EKYW++ NSW + 
Sbjct: 167 TDNDEVSDGDNDN-FNPFE----------LTNHAVLLVGWGEDEIKGEKYWIVKNSWGSS 215

Query: 280 WGDNGLFKILRGKDECGIESSITAGVP 306
           WG+ G FKI RG +ECGIES      P
Sbjct: 216 WGEKGYFKIRRGTNECGIESQAVFAYP 242

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are associated with Papillon-Lefevre and Haim-Munk syndromes, rare diseases characterized by hyperkeratosis and early-onset periodontitis. Cathepsin C is widely expressed in many tissues with high levels in lung, kidney and placenta. It is also highly expressed in cytotoxic lymphocytes and mature myeloid cells. Length = 243

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score =  111 bits (279), Expect = 2e-29
 Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 46/169 (27%)

Query: 138 KGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDD-L 196
             H   C  +   +    Y K   +G   Y+   +E+++   + ++GPV  A   ++D  
Sbjct: 90  TAHDGTCKFKKSNSK---YAKIKGYGDVPYN---DEEALQAALAKNGPVSVAIDAYEDDF 143

Query: 197 ILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRI 256
            LYKSG                                 V+              HA+ I
Sbjct: 144 QLYKSG---------------------------------VYKHTECSGEL----DHAVLI 166

Query: 257 LGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGV 305
           +G+G +      YW++ NSW TDWG+NG F+I RG +ECGI S  +  +
Sbjct: 167 VGYGTENG--VPYWIVKNSWGTDWGENGYFRIARGVNECGIASEASYPI 213

Length = 213

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score = 90.4 bits (225), Expect = 1e-21
 Identities = 54/255 (21%), Positives = 81/255 (31%), Gaps = 90/255 (35%)

Query: 85  PANFDSRTKWPNCPTIREIRDQGSCGSCW---------GCRPYEIAPCEHHVNGTRPS-- 133
           P + D R K      +  ++DQGSCGSCW         G   Y I        G   S  
Sbjct: 1   PESVDWREKG----AVTPVKDQGSCGSCWAFSTVGALEGA--YAIK------TGKLVSLS 48

Query: 134 ------CDASKGH-----TPKCVRECQENYDVPYKKDLNFGAK----------------- 165
                 C  S  +      P    E  +N  +  + D  +  K                 
Sbjct: 49  EQQLVDCSTSGNNGCNGGNPDNAFEYVKNGGLASESDYPYTGKDGTCKYNSSKVGAKITG 108

Query: 166 -SYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDN 224
            S     +E+++   +  +GPV  A         YK G                      
Sbjct: 109 YSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGG---------------------- 146

Query: 225 TSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
                      ++              HA+ ++G+G +      YW++ NSW T WG+ G
Sbjct: 147 -----------IYSG---PCCSNTNLNHAVLLVGYGTENG--VDYWIVKNSWGTSWGEKG 190

Query: 285 LFKILRGKDECGIES 299
             +I RG + CGI S
Sbjct: 191 YIRIARGSNLCGIAS 205

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score = 88.4 bits (220), Expect = 3e-21
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 9/82 (10%)

Query: 233 AFTVFDDLILYKSG--------KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
                 D   YKSG             HA+ I+G+G + ++ + YW++ NSW TDWG+NG
Sbjct: 94  VAIDASDFQFYKSGIYDHPGCGSGTLDHAVLIVGYGTEVENGKDYWIVKNSWGTDWGENG 153

Query: 285 LFKILRGKD-ECGIESSITAGV 305
            F+I RGK+ ECGIE+S+ +  
Sbjct: 154 YFRIARGKNNECGIEASVASYP 175

Length = 175

>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional

 Score = 82.7 bits (204), Expect = 1e-17
 Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 20/151 (13%)

Query: 156 YKKDLNFGAKSYSVS--SNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTA 213
           Y KD N+    Y  +  + EK +M EIY +GP+  +F    D   Y  G ++V       
Sbjct: 538 YAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHAR 597

Query: 214 MSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKE--KYWL 271
              +     +    +                +G     HAI ++GWGE+E + +  KYW+
Sbjct: 598 RCTVDLPKHNGVYNI----------------TGWEKVNHAIVLVGWGEEEINGKLYKYWI 641

Query: 272 IANSWNTDWGDNGLFKILRGKDECGIESSIT 302
             NSW  +WG  G FKI+RGK+  GIES   
Sbjct: 642 GRNSWGKNWGKEGYFKIIRGKNFSGIESQSL 672

Length = 693

>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

 Score = 75.6 bits (186), Expect = 3e-16
 Identities = 46/230 (20%), Positives = 68/230 (29%), Gaps = 74/230 (32%)

Query: 102 EIRDQGSCGSCWG-----------------------CRPYEIAPCEHHVNGTRPSCD--- 135
            +++QGS GSCW                           Y          G   SCD   
Sbjct: 11  PVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGG 70

Query: 136 ---------ASKGHTPKCVRECQENYDVPYKKDL--------NFGAKSYSVSSNEKSIMK 178
                    A KG  P+         D    K                  + +N + I +
Sbjct: 71  PLSALLKLVALKGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKE 130

Query: 179 EIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFD 238
            + + GPV   F V+      K G       E     L +                    
Sbjct: 131 ALAKGGPVVAGFDVYSGFDRLKEGII----YEEIVYLLYEDGDL---------------- 170

Query: 239 DLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKI 288
                      GGHA+ I+G+ ++    +  +++ NSW TDWGDNG  +I
Sbjct: 171 -----------GGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRI 209

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 11/72 (15%)

Query: 236 VFDDLILYKSG-------KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKI 288
           V  +L+ YKSG       K+L  HA+ ++G G DEK+K++YW+I NSW TDWG+NG  ++
Sbjct: 366 VSRELLKYKSGVYNGECGKSLN-HAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRL 424

Query: 289 LR---GKDECGI 297
            R   G D+CGI
Sbjct: 425 ERTNEGTDKCGI 436

Length = 448

>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

 Score = 57.8 bits (140), Expect = 7e-10
 Identities = 34/148 (22%), Positives = 46/148 (31%), Gaps = 43/148 (29%)

Query: 165 KSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDN 224
             Y   S    +M EIY  GP+       + L  Y  G                      
Sbjct: 130 SDYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGG---------------------- 167

Query: 225 TSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
                      V+ +         L  H I + GWG DE   E YW++ NSW   WG+ G
Sbjct: 168 -----------VYKE----YVQDPLINHIISVAGWGVDENGVE-YWIVRNSWGEPWGERG 211

Query: 285 LFKILRG-----KDECGIESSITAGVPK 307
            F+I+       +    IE       P 
Sbjct: 212 WFRIVTSSYKGARYNLAIEEDCAWADPI 239

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239

>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 35/145 (24%), Positives = 50/145 (34%), Gaps = 35/145 (24%)

Query: 167 YSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTS 226
           Y   ++   I+ EIY HGPV  +     D   Y                           
Sbjct: 337 YGAVTDPDEIIWEIYRHGPVPASVYANSDW--YN-----------------------CDE 371

Query: 227 QLGAEGAFTVFDDLILYKSGKALG-------GHAIRILGWGEDEKSKEKYWLIANSWNT- 278
               +  +   DD     + + L         H + I+GWG DE     YWL+ + W + 
Sbjct: 372 NSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGG-DYWLVLDPWGSR 430

Query: 279 -DWGDNGLFKILRGKDECGIESSIT 302
             W D G  KI RG +   IES + 
Sbjct: 431 RSWCDGGTRKIARGVNAYNIESEVV 455

Length = 548

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 9  CGFGCNGGFPGMAWRYWVKSGIVSGGAY 36
          CG GCNGG+P  AW+Y   +G+V+GG  
Sbjct: 65 CGDGCNGGYPDAAWKYLTTTGVVTGGCQ 92

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score = 50.1 bits (119), Expect = 6e-07
 Identities = 47/245 (19%), Positives = 84/245 (34%), Gaps = 32/245 (13%)

Query: 77  YSEVDEDL---PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTR-- 131
           Y +   DL   P   D R K    P    +++QG+CGSCW          +  V G +  
Sbjct: 116 YRKARADLSAVPDAVDWREKGAVTP----VKNQGACGSCWAFSAVGNIESQWAVAGHKLV 171

Query: 132 -------PSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHG 184
                   SCD         +      + +       F  KSY   S    + +      
Sbjct: 172 RLSEQQLVSCDHVDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSE 231

Query: 185 PVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEG-AFTVFDDLILY 243
              GA            G   +  +E     +  W  ++    +  +  +F  +   +L 
Sbjct: 232 LAPGA---------RIDGYVSMESSERV---MAAWLAKNGPISIAVDASSFMSYHSGVLT 279

Query: 244 KSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGI-ESSIT 302
                   H + ++G+  +   +  YW+I NSW  DWG+ G  ++  G + C +    ++
Sbjct: 280 SCIGEQLNHGVLLVGY--NMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVS 337

Query: 303 AGVPK 307
             V +
Sbjct: 338 VHVSQ 342

Length = 348

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score = 48.3 bits (116), Expect = 7e-07
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 4/30 (13%)

Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCW 113
           LP +FD R K    P    ++DQG CGSCW
Sbjct: 1   LPESFDWRKKGAVTP----VKDQGQCGSCW 26

Length = 175

>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 47/231 (20%), Positives = 76/231 (32%), Gaps = 43/231 (18%)

Query: 83  DLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTP 142
            LP+ FD R +    P    ++DQGS GSCW          E ++N       +      
Sbjct: 98  SLPSYFDRRDEGKVSP----VKDQGSGGSCWAF--ATTRSLESYLNPESAWDFSENNMKN 151

Query: 143 KCVRECQENYDVPYKKDLN-FGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKS 201
                 ++ +D       N   + +Y                GPV      + +   +  
Sbjct: 152 LLGVPYEKGFDYTSNDGGNADMSAAY-----------LTEWSGPVYETDDPYSENSYFSP 200

Query: 202 GRFFVPGNETTAMSLI-KWTIRDNTS------QLGAEGAFTVFDDLI--------LYKSG 246
               V  +   A  +  +    DN +        GA  +    D            Y   
Sbjct: 201 TNLPVTKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSLGICIPYPYVDS 260

Query: 247 KALGGHAIRILGWGEDEKSKEKY---------WLIANSWNTDWGDNGLFKI 288
               GHA+ I+G+ +D      +         ++I NSW T+WG+NG F I
Sbjct: 261 GENWGHAVLIVGY-DDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWI 310

Length = 372

>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 11/106 (10%)

Query: 199 YKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGG-----HA 253
           Y+S  F         + +IK  I +  S +    A  V       K  + L G     HA
Sbjct: 667 YESEHF--HDKMDAFIKIIKDEIMNKGSVIAYIKAENVLGYEFNGKKVQNLCGDDTADHA 724

Query: 254 IRILGWGE---DEKSKEKYWLIANSWNTDWGDNGLFKI-LRGKDEC 295
           + I+G+G    DE  K+ YW++ NSW   WGD G FK+ + G   C
Sbjct: 725 VNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHC 770

Length = 1004

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)

Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCW 113
           LP +FD R K      +  ++DQG CGSCW
Sbjct: 1   LPESFDWREKGA----VTPVKDQGQCGSCW 26

Length = 213

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 14/68 (20%)

Query: 235 TVFDDLILYKSGKALG------GHAIRILGWG------EDEKSKEK--YWLIANSWNTDW 280
            V DD   YK G   G       HA+ ++G+G       D K  EK  Y++I NSW   W
Sbjct: 399 AVSDDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESW 458

Query: 281 GDNGLFKI 288
           G+ G  +I
Sbjct: 459 GEKGFIRI 466

Length = 489

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 9  CGFGCNGGFPGMAWRYWVKS-GIVSGGAY 36
             GCNGG P  A+ Y  K+ GIV+   Y
Sbjct: 59 GNNGCNGGLPDNAFEYIKKNGGIVTESDY 87

Length = 213

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
KOG1542|consensus	372		100.0
PTZ00203	348	cathepsin L protease; Provisional	100.0
KOG1543|consensus	325		100.0
PTZ00021	489	falcipain-2; Provisional	100.0
PTZ00200	448	cysteine proteinase; Provisional	100.0
cd02621	243	Peptidase_C1A_CathepsinC Cathepsin C; also known a	100.0
cd02620	236	Peptidase_C1A_CathepsinB Cathepsin B group; compos	100.0
cd02698	239	Peptidase_C1A_CathepsinX Cathepsin X; the only pap	100.0
PTZ00049	693	cathepsin C-like protein; Provisional	100.0
cd02248	210	Peptidase_C1A Peptidase C1A subfamily (MEROPS data	100.0
PTZ00364	548	dipeptidyl-peptidase I precursor; Provisional	100.0
PF00112	219	Peptidase_C1: Papain family cysteine protease This	100.0
KOG1544|consensus	470		100.0
PTZ00462	1004	Serine-repeat antigen protein; Provisional	100.0
smart00645	174	Pept_C1 Papain family cysteine protease.	100.0
cd02619	223	Peptidase_C1 C1 Peptidase family (MEROPS database	99.97
COG4870	372	Cysteine protease [Posttranslational modification,	99.86
cd00585	437	Peptidase_C1B Peptidase C1B subfamily (MEROPS data	99.55
PF03051	438	Peptidase_C1_2: Peptidase C1-like family This fami	98.64
COG3579	444	PepC Aminopeptidase C [Amino acid transport and me	96.4
PF08246	58	Inhibitor_I29: Cathepsin propeptide inhibitor doma	95.85
KOG1543|consensus	325		94.22
PF08127	41	Propeptide_C1: Peptidase family C1 propeptide; Int	93.63
PF13529	144	Peptidase_C39_2: Peptidase_C39 like family; PDB: 3	93.08
smart00848	57	Inhibitor_I29 Cathepsin propeptide inhibitor domai	90.55
PTZ00364	548	dipeptidyl-peptidase I precursor; Provisional	87.46
cd02698	239	Peptidase_C1A_CathepsinX Cathepsin X; the only pap	84.23
cd02620	236	Peptidase_C1A_CathepsinB Cathepsin B group; compos	81.65
cd02621	243	Peptidase_C1A_CathepsinC Cathepsin C; also known a	80.78
PTZ00049	693	cathepsin C-like protein; Provisional	80.21

>KOG1542|consensus

Probab=100.00  E-value=1.6e-51  Score=378.72  Aligned_cols=219  Identities=25%  Similarity=0.512  Sum_probs=167.1

Q ss_pred             CCCCCcccccccCCCCcHHHHHHHhCCCCCCCCCCCCCCcc-ccc-CCCCCCCCCceecCCCCCCCCCCccccCccCCCC
Q psy8713          34 GAYGSKQAEKNSLSNIPRAHLKSWMGVHPDYNLPANRLPEL-IGY-SEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGS  111 (309)
Q Consensus        34 ~~~~s~~~g~Nf~~~~~~e~~~~~lg~~~~~~~~~~~~~~~-~~~-~~~~~~lP~~~DwR~~~~~cg~vtpVkdQg~CGS  111 (309)
                      ++.+|-..|+|+|+|+++|||+++++......  . +.+.. ... .....+||++||||++    |+||||||||+|||
T Consensus       108 ~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~--~-~~~~~~~~~~~~~~~~lP~~fDWR~k----gaVTpVKnQG~CGS  180 (372)
T KOG1542|consen  108 NDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRG--S-KLPGDAAEAPIEPGESLPESFDWRDK----GAVTPVKNQGMCGS  180 (372)
T ss_pred             cCccccccCccchhhcCHHHHHHHhhcccccc--c-cCccccccCcCCCCCCCCcccchhcc----CCccccccCCcCcc
Confidence            44579999999999999999888765543321  0 11111 111 2347789999999999    99999999999999


Q ss_pred             Cc--------------------CCCccccCCCCCCCCCCCCCCCCCCC-------------------CCccccc-ccccC
Q psy8713         112 CW--------------------GCRPYEIAPCEHHVNGTRPSCDASKG-------------------HTPKCVR-ECQEN  151 (309)
Q Consensus       112 CW--------------------~cs~~~~~~C~~~~~g~~~~C~~~~~-------------------~~~~~~~-~c~~~  151 (309)
                      ||                    +.|.|++.+|+.-+    ..|+++..                   |+..-.+ .|...
T Consensus       181 CWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~d----~gC~GGl~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~  256 (372)
T KOG1542|consen  181 CWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSCD----NGCNGGLMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFD  256 (372)
T ss_pred             hhhhhhhhhhhhHHHhhcCcccccchhhhhcccCcC----CcCCCCChhHHHHHHHHhCCccccccCCccccCCCccccc
Confidence            99                    66788899997643    34777653                   3332222 33211


Q ss_pred             cccccccccccee-eeeeecchHHHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhhhhhhhcccCcccCc
Q psy8713         152 YDVPYKKDLNFGA-KSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGA  230 (309)
Q Consensus       152 ~~~~~~~~~~~~~-~~~~v~~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~  230 (309)
                      .     .+....+ ..+.++.||++|.+.|.++|||+|+|++ ..++.|.+||...-                       
T Consensus       257 ~-----~~~~v~I~~f~~l~~nE~~ia~wLv~~GPi~vgiNa-~~mQ~YrgGV~~P~-----------------------  307 (372)
T KOG1542|consen  257 K-----SKIVVSIKDFSMLSNNEDQIAAWLVTFGPLSVGINA-KPMQFYRGGVSCPS-----------------------  307 (372)
T ss_pred             h-----hhceEEEeccEecCCCHHHHHHHHHhcCCeEEEEch-HHHHHhcccccCCC-----------------------
Confidence            1     1112222 3345677999999999999999999997 57899999999831                       


Q ss_pred             CCcceeccccccccCCCccCCceEEEEEeeccCCC-CccEEEEEcCCCCCCCCCceEEEEccCCccccCcceEEEe
Q psy8713         231 EGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKS-KEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGV  305 (309)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~-g~~YWiikNSWG~~WG~~Gy~~i~~g~n~cgi~~~~~~~~  305 (309)
                                 ...|++..++|||+|||||..  . .++|||||||||++|||+|||||.||.|.|||++++++++
T Consensus       308 -----------~~~Cs~~~~~HaVLlvGyG~~--g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss~~  370 (372)
T KOG1542|consen  308 -----------KYICSPKLLNHAVLLVGYGSS--GYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMVSSAA  370 (372)
T ss_pred             -----------cccCCccccCceEEEEeecCC--CCCCceEEEECCccccccccceEEEeccccccccccchhhhh
Confidence                       047988889999999999988  5 8999999999999999999999999999999999998765

>PTZ00203 cathepsin L protease; Provisional

Probab=100.00  E-value=3.6e-47  Score=361.66  Aligned_cols=235  Identities=17%  Similarity=0.317  Sum_probs=160.9

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHHHHHH-hCCCCCCCCCCCCCCcccccC-CCCCCCCCceecCCCC
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSW-MGVHPDYNLPANRLPELIGYS-EVDEDLPANFDSRTKW   94 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~~-lg~~~~~~~~~~~~~~~~~~~-~~~~~lP~~~DwR~~~   94 (309)
                      ++.+..++|.+||..   + .+|++|+|+|+|+++|||+++ ++.......+........... ....+||++||||++ 
T Consensus        61 iF~~N~~~I~~~N~~---~-~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DWR~~-  135 (348)
T PTZ00203         61 NFERNLELMREHQAR---N-PHARFGITKFFDLSEAEFAARYLNGAAYFAAAKQHAGQHYRKARADLSAVPDAVDWREK-  135 (348)
T ss_pred             HHHHHHHHHHHHhcc---C-CCeEEeccccccCCHHHHHHHhcCCCcccccccccccccccccccccccCCCCCcCCcC-
Confidence            467778889888853   2 489999999999999999864 432211100100000001111 112368999999999 


Q ss_pred             CCCCCCccccCccCCCCCc--------------------CCCccccCCCCC-------CCCC---------CC-CCCCCC
Q psy8713          95 PNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEH-------HVNG---------TR-PSCDAS  137 (309)
Q Consensus        95 ~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~-------~~~g---------~~-~~C~~~  137 (309)
                         |.|+||||||.|||||                    ..|+|++.+|..       |...         .. ..+.+.
T Consensus       136 ---g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~~~~GC~GG~~~~a~~yi~~~~~ggi~~e~  212 (348)
T PTZ00203        136 ---GAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHVDNGCGGGLMLQAFEWVLRNMNGTVFTEK  212 (348)
T ss_pred             ---CCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccCCCCCCCCCCHHHHHHHHHHhcCCCCCccc
Confidence               9999999999999999                    345556666643       2100         00 122333


Q ss_pred             CCCCccccc---ccccCccccccccccceeee-eeecchHHHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchh
Q psy8713         138 KGHTPKCVR---ECQENYDVPYKKDLNFGAKS-YSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTA  213 (309)
Q Consensus       138 ~~~~~~~~~---~c~~~~~~~~~~~~~~~~~~-~~v~~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~  213 (309)
                      .+|+.....   .|......    ...+.... ..++.++++|+.+|+++|||+|+|++ .+|+.|++|||.        
T Consensus       213 ~YPY~~~~~~~~~C~~~~~~----~~~~~i~~~~~i~~~e~~~~~~l~~~GPv~v~i~a-~~f~~Y~~GIy~--------  279 (348)
T PTZ00203        213 SYPYVSGNGDVPECSNSSEL----APGARIDGYVSMESSERVMAAWLAKNGPISIAVDA-SSFMSYHSGVLT--------  279 (348)
T ss_pred             cCCCccCCCCCCcCCCCccc----ccceEecceeecCcCHHHHHHHHHhCCCEEEEEEh-hhhcCccCceee--------
Confidence            344432221   24321110    01112222 24555788899999999999999998 489999999997        


Q ss_pred             hhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEccCC
Q psy8713         214 MSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD  293 (309)
Q Consensus       214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g~n  293 (309)
                                                   . |.....||||+|||||.+  ++++|||||||||++|||+|||||+||.|
T Consensus       280 -----------------------------~-c~~~~~nHaVliVGYG~~--~g~~YWiikNSWG~~WGe~GY~ri~rg~n  327 (348)
T PTZ00203        280 -----------------------------S-CIGEQLNHGVLLVGYNMT--GEVPYWVIKNSWGEDWGEKGYVRVTMGVN  327 (348)
T ss_pred             -----------------------------c-cCCCCCCeEEEEEEEecC--CCceEEEEEcCCCCCcCcCceEEEEcCCC
Confidence                                         3 544456999999999987  78999999999999999999999999999


Q ss_pred             ccccCcceEEE
Q psy8713         294 ECGIESSITAG  304 (309)
Q Consensus       294 ~cgi~~~~~~~  304 (309)
                      .|||++.++.+
T Consensus       328 ~Cgi~~~~~~~  338 (348)
T PTZ00203        328 ACLLTGYPVSV  338 (348)
T ss_pred             cccccceEEEE
Confidence            99999887765

>KOG1543|consensus

Probab=100.00  E-value=5e-46  Score=351.24  Aligned_cols=235  Identities=27%  Similarity=0.483  Sum_probs=174.0

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHHHHHHhCCCCCCCCCCCCCCcccccCCCCCCCCCceecCCCCCC
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPN   96 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~~   96 (309)
                      .+...++++..|++..   ..+|++++|+|++++.||++.+........ .   ............+||++||||++|  
T Consensus        49 ~f~~n~~~~~~~n~~~---~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~-~---~~~~~~~~~~~~~~p~s~DwR~~~--  119 (325)
T KOG1543|consen   49 IFKENLQKIESHNLKY---VLSFLMGVNQFADLTTEEFKRKKTGKKPPE-I---KRDKFTEKLDGDDLPDSFDWRDKG--  119 (325)
T ss_pred             HHHHHHHHHHhhhhhh---ceeeeeccccccccchHHHHHhhccccCcc-c---cccccccccchhhCCCCccccccC--
Confidence            4566677777777766   579999999888888777766554433221 1   111111222356899999999994  


Q ss_pred             CCCCccccCccCCCCCc---------------------CCCccccCCCCCCCCCCCCCCCCCC-----------------
Q psy8713          97 CPTIREIRDQGSCGSCW---------------------GCRPYEIAPCEHHVNGTRPSCDASK-----------------  138 (309)
Q Consensus        97 cg~vtpVkdQg~CGSCW---------------------~cs~~~~~~C~~~~~g~~~~C~~~~-----------------  138 (309)
                       ..+.|||||+.|||||                     ..|++++.+|...   ....|.++.                 
T Consensus       120 -~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~---~~~GC~GG~~~~A~~yi~~~G~~t~~  195 (325)
T KOG1543|consen  120 -AVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGE---CGDGCNGGEPKNAFKYIKKNGGVTEC  195 (325)
T ss_pred             -CcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCC---CCCCcCCCCHHHHHHHHHHhCCCCCC
Confidence             3455699999999999                     3456666666553   122344432                 


Q ss_pred             --CCCcccccccccCccccccccccceeeeeeecchHHHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhh
Q psy8713         139 --GHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSL  216 (309)
Q Consensus       139 --~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~  216 (309)
                        ||+......|.....    ...++....+.++.++++|+.+|+.+|||+|+|.++.+|+.|++|||..          
T Consensus       196 ~~Ypy~~~~~~C~~~~~----~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F~~Y~~GVy~~----------  261 (325)
T KOG1543|consen  196 ENYPYIGKDGTCKSNKK----DKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYEDFSLYKGGVYAE----------  261 (325)
T ss_pred             cCCCCcCCCCCccCCCc----cceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehhhhhhccCceEeC----------
Confidence              343333346654332    3345555667888889999999999999999999999999999999994          


Q ss_pred             hhhhhcccCcccCcCCcceeccccccccCCCc-cCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEccCCcc
Q psy8713         217 IKWTIRDNTSQLGAEGAFTVFDDLILYKSGKA-LGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDEC  295 (309)
Q Consensus       217 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g~n~c  295 (309)
                                                 .+... .++|||+|||||+.  ++.+|||||||||++|||+|||||.|+.+.|
T Consensus       262 ---------------------------~~~~~~~~~Hav~iVGyG~~--~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~  312 (325)
T KOG1543|consen  262 ---------------------------EKGDDKEGDHAVLIVGYGTG--DGVDYWIVKNSWGTDWGEKGYFRIARGVNKC  312 (325)
T ss_pred             ---------------------------CCCCCCCCCceEEEEEEcCC--CCceeEEEEcCCCCCcccCceEEEecCCCch
Confidence                                       33333 57999999999993  8899999999999999999999999999999


Q ss_pred             ccCcceEEEeec
Q psy8713         296 GIESSITAGVPK  307 (309)
Q Consensus       296 gi~~~~~~~~~~  307 (309)
                      +|++.++++.++
T Consensus       313 ~I~~~~~~~p~~  324 (325)
T KOG1543|consen  313 GIASEASYGPIK  324 (325)
T ss_pred             hhhcccccCCCC
Confidence            999999886664

>PTZ00021 falcipain-2; Provisional

Probab=100.00  E-value=4e-44  Score=351.29  Aligned_cols=233  Identities=21%  Similarity=0.383  Sum_probs=159.4

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHHHHHH-hCCCCC-CC---CCCCCCCcc----cccCCC-CCCCCC
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSW-MGVHPD-YN---LPANRLPEL----IGYSEV-DEDLPA   86 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~~-lg~~~~-~~---~~~~~~~~~----~~~~~~-~~~lP~   86 (309)
                      ++.+.+++|.+||...  + .+|++|+|+|+|++.|||+++ ++.... ..   .+..+....    ....+. ...+|+
T Consensus       192 iF~~Nl~~Ie~hN~~~--~-~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~  268 (489)
T PTZ00021        192 SFVENLAKINAHNNKE--N-VLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKSNGKKSPRVINYDDVIKKYKPKDATFDHA  268 (489)
T ss_pred             HHHHHHHHHHHhhccC--C-CCEEEeccccccCCHHHHHHHhccccccccccccccccccccccccccccccccccCCcc
Confidence            4677888999999642  3 589999999999999999875 443211 00   000000000    000011 112499


Q ss_pred             ceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCC---------
Q psy8713          87 NFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDAS---------  137 (309)
Q Consensus        87 ~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~---------  137 (309)
                      +||||++    |.|+||||||.|||||                    ..|+|++.+|...    ..+|.++         
T Consensus       269 s~DWR~~----g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDCs~~----n~GC~GG~~~~Af~yi  340 (489)
T PTZ00021        269 KYDWRLH----NGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSFK----NNGCYGGLIPNAFEDM  340 (489)
T ss_pred             ccccccC----CCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhhccC----CCCCCCcchHhhhhhh
Confidence            9999999    9999999999999999                    4566667677532    2234443         


Q ss_pred             ----------CCCCccc-ccccccCccccccccccceeeee-eecchHHHHHHHHHhcCCEEEEEecccccccCCCceEe
Q psy8713         138 ----------KGHTPKC-VRECQENYDVPYKKDLNFGAKSY-SVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFF  205 (309)
Q Consensus       138 ----------~~~~~~~-~~~c~~~~~~~~~~~~~~~~~~~-~v~~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~  205 (309)
                                .+|+... ...|.....     ...+.+..| .++  +++|+++|+.+|||+|+|.+.++|+.|++|||.
T Consensus       341 ~~~gGl~tE~~YPY~~~~~~~C~~~~~-----~~~~~i~~y~~i~--~~~lk~al~~~GPVsv~i~a~~~f~~YkgGIy~  413 (489)
T PTZ00021        341 IELGGLCSEDDYPYVSDTPELCNIDRC-----KEKYKIKSYVSIP--EDKFKEAIRFLGPISVSIAVSDDFAFYKGGIFD  413 (489)
T ss_pred             hhccccCcccccCccCCCCCccccccc-----cccceeeeEEEec--HHHHHHHHHhcCCeEEEEEeecccccCCCCcCC
Confidence                      3343222 123321110     112333333 343  468999999999999999998899999999998


Q ss_pred             CCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCC--------CCccEEEEEcCCC
Q psy8713         206 VPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEK--------SKEKYWLIANSWN  277 (309)
Q Consensus       206 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~--------~g~~YWiikNSWG  277 (309)
                                                           ..|+.. ++|||+|||||++..        .+.+|||||||||
T Consensus       414 -------------------------------------~~C~~~-~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWG  455 (489)
T PTZ00021        414 -------------------------------------GECGEE-PNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWG  455 (489)
T ss_pred             -------------------------------------CCCCCc-cceEEEEEEecCcCCcccccccCCCCCEEEEECCCC
Confidence                                                 447654 699999999997521        2357999999999


Q ss_pred             CCCCCCceEEEEccC----CccccCcceEEEe
Q psy8713         278 TDWGDNGLFKILRGK----DECGIESSITAGV  305 (309)
Q Consensus       278 ~~WG~~Gy~~i~~g~----n~cgi~~~~~~~~  305 (309)
                      ++|||+|||||+|+.    |.|||++.+++++
T Consensus       456 t~WGE~GY~rI~r~~~g~~n~CGI~t~a~yP~  487 (489)
T PTZ00021        456 ESWGEKGFIRIETDENGLMKTCSLGTEAYVPL  487 (489)
T ss_pred             CCcccCeEEEEEcCCCCCCCCCCCcccceeEe
Confidence            999999999999986    5899999876643

>PTZ00200 cysteine proteinase; Provisional

Probab=100.00  E-value=1.1e-43  Score=346.61  Aligned_cols=232  Identities=24%  Similarity=0.410  Sum_probs=158.8

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHHHHHHh-CCCCCCCC----CCCC-----C-Cccccc--------
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSWM-GVHPDYNL----PANR-----L-PELIGY--------   77 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~~l-g~~~~~~~----~~~~-----~-~~~~~~--------   77 (309)
                      ++....++|.+|+-    + .+|++|+|+|+|+++|||++++ +...+...    +...     . ......        
T Consensus       149 iF~~Nl~~I~~hN~----~-~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (448)
T PTZ00200        149 TFRNNYLEVKSHKG----D-EPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNSTSHNNDFKARHVSNPTYLKNLKKAKNT  223 (448)
T ss_pred             HHHHHHHHHHHhcC----c-CCeEEeccccccCCHHHHHHHhccCCCccccccccccccccccccccccccccccccccc
Confidence            45566777888862    2 5899999999999999997754 33221110    0000     0 000000        


Q ss_pred             -C---CCCCCCCCceecCCCCCCCCCCccccCcc-CCCCCc--------------------CCCccccCCCCCCCCCCCC
Q psy8713          78 -S---EVDEDLPANFDSRTKWPNCPTIREIRDQG-SCGSCW--------------------GCRPYEIAPCEHHVNGTRP  132 (309)
Q Consensus        78 -~---~~~~~lP~~~DwR~~~~~cg~vtpVkdQg-~CGSCW--------------------~cs~~~~~~C~~~~~g~~~  132 (309)
                       .   .....+|++||||++    |.|+|||||| .|||||                    ..|+|++.+|...    ..
T Consensus       224 ~~~~~~~~~~~P~~~DWR~~----g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~~~~~~LSeQqLvDC~~~----~~  295 (448)
T PTZ00200        224 DEDVKDPSKITGEGLDWRRA----DAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQELVNCDTK----SQ  295 (448)
T ss_pred             ccccccccccCCCCccCCCC----CCCCCcccCCCccchHHHHhHHHHHHHHHHHhcCCCeecCHHHHhhccCc----cC
Confidence             0   001236999999999    9999999999 999999                    4566777777542    12


Q ss_pred             CCCCC------------------CCCCcccccccccCccccccccccceeeeeeecchHHHHHHHHHhcCCEEEEEeccc
Q psy8713         133 SCDAS------------------KGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFD  194 (309)
Q Consensus       133 ~C~~~------------------~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~~~~ik~~l~~~GPv~v~~~~~~  194 (309)
                      +|.++                  .+|+......|.....      ..+.+..|.+..+.+ ++++++.+|||+|+|.+++
T Consensus       296 GC~GG~~~~A~~yi~~~Gi~~e~~YPY~~~~~~C~~~~~------~~~~i~~y~~~~~~~-~l~~~l~~GPV~v~i~~~~  368 (448)
T PTZ00200        296 GCSGGYPDTALEYVKNKGLSSSSDVPYLAKDGKCVVSST------KKVYIDSYLVAKGKD-VLNKSLVISPTVVYIAVSR  368 (448)
T ss_pred             CCCCCcHHHHHHHHhhcCccccccCCCCCCCCCCcCCCC------CeeEecceEecCHHH-HHHHHHhcCCEEEEeeccc
Confidence            34443                  3455444445532211      112233344444444 4455556899999999988


Q ss_pred             ccccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEc
Q psy8713         195 DLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIAN  274 (309)
Q Consensus       195 ~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikN  274 (309)
                      +|+.|++|||.                                     ..|+.. ++|||+|||||.+...+.+||||||
T Consensus       369 ~f~~Yk~GIy~-------------------------------------~~C~~~-~nHaV~lVGyG~d~~~g~~YWIIkN  410 (448)
T PTZ00200        369 ELLKYKSGVYN-------------------------------------GECGKS-LNHAVLLVGEGYDEKTKKRYWIIKN  410 (448)
T ss_pred             ccccCCCCccc-------------------------------------cccCCC-CcEEEEEEEecccCCCCCceEEEEc
Confidence            99999999998                                     447654 6999999999965336889999999


Q ss_pred             CCCCCCCCCceEEEEcc---CCccccCcceEEEee
Q psy8713         275 SWNTDWGDNGLFKILRG---KDECGIESSITAGVP  306 (309)
Q Consensus       275 SWG~~WG~~Gy~~i~~g---~n~cgi~~~~~~~~~  306 (309)
                      |||++|||+|||||+|+   .|.|||++.+..++.
T Consensus       411 SWG~~WGe~GY~ri~r~~~g~n~CGI~~~~~~P~~  445 (448)
T PTZ00200        411 SWGTDWGENGYMRLERTNEGTDKCGILTVGLTPVF  445 (448)
T ss_pred             CCCCCcccCeeEEEEeCCCCCCcCCccccceeeEE
Confidence            99999999999999995   489999998877654

>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

Probab=100.00  E-value=4.9e-43  Score=318.95  Aligned_cols=187  Identities=35%  Similarity=0.672  Sum_probs=135.2

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------------CCCccccCCCCCCCCCCCCCCCCC
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------------GCRPYEIAPCEHHVNGTRPSCDAS  137 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------------~cs~~~~~~C~~~~~g~~~~C~~~  137 (309)
                      ||++||||+.++++..|+|||||+.|||||                          ..|++++.+|...    ...|.++
T Consensus         1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~----~~GC~GG   76 (243)
T cd02621           1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQY----SQGCDGG   76 (243)
T ss_pred             CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCC----CCCCCCC
Confidence            799999999987777999999999999999                          1346667777542    1234443


Q ss_pred             C------------------CCCcc-cccccccCc-c-ccccccccce-eeeeeecchHHHHHHHHHhcCCEEEEEecccc
Q psy8713         138 K------------------GHTPK-CVRECQENY-D-VPYKKDLNFG-AKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDD  195 (309)
Q Consensus       138 ~------------------~~~~~-~~~~c~~~~-~-~~~~~~~~~~-~~~~~v~~~~~~ik~~l~~~GPv~v~~~~~~~  195 (309)
                      .                  +|+.. ....|.... . ..+.. ..+. +..+....++++||++|+++|||+++|.++++
T Consensus        77 ~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~~~  155 (243)
T cd02621          77 FPFLVGKFAEDFGIVTEDYFPYTADDDRPCKASPSECRRYYF-SDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSD  155 (243)
T ss_pred             CHHHHHHHHHhcCcCCCceeCCCCCCCCCCCCCccccccccc-cceeEcccccccCCHHHHHHHHHHcCCEEEEEEeccc
Confidence            2                  34433 334453211 0 00000 0011 11111234788999999999999999999989


Q ss_pred             cccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCC--------CccCCceEEEEEeeccCCCCc
Q psy8713         196 LILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSG--------KALGGHAIRILGWGEDEKSKE  267 (309)
Q Consensus       196 f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~HaV~iVGyg~~~~~g~  267 (309)
                      |+.|++|||..+...                                ..|.        ...++|||+|||||++..+++
T Consensus       156 F~~Y~~GIy~~~~~~--------------------------------~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~  203 (243)
T cd02621         156 FDFYKEGVYHHTDND--------------------------------EVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGE  203 (243)
T ss_pred             ccccCCeEECcCCcc--------------------------------cccccccccccCcccCCeEEEEEEeeccCCCCC
Confidence            999999999843100                                1132        235799999999998732388


Q ss_pred             cEEEEEcCCCCCCCCCceEEEEccCCccccCcceEEEeec
Q psy8713         268 KYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGVPK  307 (309)
Q Consensus       268 ~YWiikNSWG~~WG~~Gy~~i~~g~n~cgi~~~~~~~~~~  307 (309)
                      +|||||||||++|||+|||||+|+.|.|||++.+++++|.
T Consensus       204 ~YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~~~~~~~~  243 (243)
T cd02621         204 KYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAVFAYPI  243 (243)
T ss_pred             cEEEEEcCCCCCCCcCCeEEEecCCcccCcccceEeeccC
Confidence            9999999999999999999999999999999999999883

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc

>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

Probab=100.00  E-value=4.6e-43  Score=318.01  Aligned_cols=178  Identities=49%  Similarity=1.000  Sum_probs=131.9

Q ss_pred             CCceecCCCCCCCCCCccccCccCCCCCc----------------------CCCccccCCCCCCCCCCCCCCCCCC----
Q psy8713          85 PANFDSRTKWPNCPTIREIRDQGSCGSCW----------------------GCRPYEIAPCEHHVNGTRPSCDASK----  138 (309)
Q Consensus        85 P~~~DwR~~~~~cg~vtpVkdQg~CGSCW----------------------~cs~~~~~~C~~~~~g~~~~C~~~~----  138 (309)
                      |++||||+++++|..|+||+|||.|||||                      ..|+|++.+|...   ....|.++.    
T Consensus         1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~---~~~gC~GG~~~~a   77 (236)
T cd02620           1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSG---CGDGCNGGYPDAA   77 (236)
T ss_pred             CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCC---CCCCCCCCCHHHH
Confidence            89999999988877778999999999999                      3456666666542   122344332    


Q ss_pred             --------------CCCcccc------------------cccccCccccccccccceeeeeeecchHHHHHHHHHhcCCE
Q psy8713         139 --------------GHTPKCV------------------RECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPV  186 (309)
Q Consensus       139 --------------~~~~~~~------------------~~c~~~~~~~~~~~~~~~~~~~~v~~~~~~ik~~l~~~GPv  186 (309)
                                    +|+....                  ..|.......+..+.......+.+..++++||++|+++|||
T Consensus        78 ~~~i~~~G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPv  157 (236)
T cd02620          78 WKYLTTTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPV  157 (236)
T ss_pred             HHHHHhcCCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeCCHHHHHHHHHHHCCCe
Confidence                          2332111                  12321111011121222223345556789999999999999


Q ss_pred             EEEEecccccccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCC
Q psy8713         187 EGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSK  266 (309)
Q Consensus       187 ~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g  266 (309)
                      +++|.+.++|+.|++|||.                                     ..|+...++|||+|||||++  ++
T Consensus       158 ~v~i~~~~~f~~Y~~Giy~-------------------------------------~~~~~~~~~HaV~iVGyg~~--~g  198 (236)
T cd02620         158 QAAFTVYEDFLYYKSGVYQ-------------------------------------HTSGKQLGGHAVKIIGWGVE--NG  198 (236)
T ss_pred             EEEEEechhhhhcCCcEEe-------------------------------------ecCCCCcCCeEEEEEEEecc--CC
Confidence            9999998899999999998                                     33555567999999999988  78


Q ss_pred             ccEEEEEcCCCCCCCCCceEEEEccCCccccCcceEEE
Q psy8713         267 EKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAG  304 (309)
Q Consensus       267 ~~YWiikNSWG~~WG~~Gy~~i~~g~n~cgi~~~~~~~  304 (309)
                      ++|||||||||++|||+|||||+|+.|+|||++.++++
T Consensus       199 ~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~~~  236 (236)
T cd02620         199 VPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVAG  236 (236)
T ss_pred             eeEEEEEeCCCCCCCCCcEEEEEccCcccccccceecC
Confidence            99999999999999999999999999999999988753

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane

>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

Probab=100.00  E-value=5.4e-42  Score=311.55  Aligned_cols=180  Identities=27%  Similarity=0.505  Sum_probs=130.2

Q ss_pred             CCCceecCCCCCCCCCCccccCcc---CCCCCc-----------------------CCCccccCCCCCCCCCCCCCCCCC
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQG---SCGSCW-----------------------GCRPYEIAPCEHHVNGTRPSCDAS  137 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg---~CGSCW-----------------------~cs~~~~~~C~~~~~g~~~~C~~~  137 (309)
                      ||++||||+++.. ..|+||||||   .|||||                       ..|+|++.+|..     ...|.++
T Consensus         1 lP~~~Dwr~~~~~-~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~-----~~gC~GG   74 (239)
T cd02698           1 LPKSWDWRNVNGV-NYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG-----GGSCHGG   74 (239)
T ss_pred             CCCCcccccCCCC-cccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC-----CCCccCc
Confidence            7999999998221 2899999998   899999                       245666677753     1224332


Q ss_pred             C------------------CCCccccccccc----------CccccccccccceeeeeeecchHHHHHHHHHhcCCEEEE
Q psy8713         138 K------------------GHTPKCVRECQE----------NYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGA  189 (309)
Q Consensus       138 ~------------------~~~~~~~~~c~~----------~~~~~~~~~~~~~~~~~~v~~~~~~ik~~l~~~GPv~v~  189 (309)
                      .                  +|+..-...|..          ......+....+.+..|....++++||++|+++|||+++
T Consensus        75 ~~~~a~~~~~~~Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~GPV~v~  154 (239)
T cd02698          75 DPGGVYEYAHKHGIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVSGRDKMMAEIYARGPISCG  154 (239)
T ss_pred             CHHHHHHHHHHcCcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecCCHHHHHHHHHHcCCEEEE
Confidence            2                  333222222321          000001111122333332223578899999999999999


Q ss_pred             EecccccccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccE
Q psy8713         190 FTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKY  269 (309)
Q Consensus       190 ~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~Y  269 (309)
                      |.++++|+.|++|||+.                                     .+....++|||+|||||++. ++++|
T Consensus       155 i~~~~~f~~Y~~GIy~~-------------------------------------~~~~~~~~HaV~IVGyG~~~-~g~~Y  196 (239)
T cd02698         155 IMATEALENYTGGVYKE-------------------------------------YVQDPLINHIISVAGWGVDE-NGVEY  196 (239)
T ss_pred             EEecccccccCCeEEcc-------------------------------------CCCCCcCCeEEEEEEEEecC-CCCEE
Confidence            99988999999999983                                     23344579999999999872 38999


Q ss_pred             EEEEcCCCCCCCCCceEEEEccC-----CccccCcceEEEeec
Q psy8713         270 WLIANSWNTDWGDNGLFKILRGK-----DECGIESSITAGVPK  307 (309)
Q Consensus       270 WiikNSWG~~WG~~Gy~~i~~g~-----n~cgi~~~~~~~~~~  307 (309)
                      ||||||||++|||+|||||+|+.     |+|+||+.+++++|.
T Consensus       197 WiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~~~~~~  239 (239)
T cd02698         197 WIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCAWADPI  239 (239)
T ss_pred             EEEEcCCCcccCcCceEEEEccCCcccccccccccceEEEeeC
Confidence            99999999999999999999999     999999999999983

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.

>PTZ00049 cathepsin C-like protein; Provisional

Probab=100.00  E-value=4.1e-40  Score=330.12  Aligned_cols=207  Identities=28%  Similarity=0.529  Sum_probs=139.0

Q ss_pred             CCCCCCceecCCCCCCCCCCccccCccCCCCCc---------------C---------------CCccccCCCCCCCCCC
Q psy8713          81 DEDLPANFDSRTKWPNCPTIREIRDQGSCGSCW---------------G---------------CRPYEIAPCEHHVNGT  130 (309)
Q Consensus        81 ~~~lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW---------------~---------------cs~~~~~~C~~~~~g~  130 (309)
                      ...||++||||+.|++|+.++||+|||.|||||               .               .|+|++.+|...    
T Consensus       378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~----  453 (693)
T PTZ00049        378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFY----  453 (693)
T ss_pred             cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCC----
Confidence            468999999999999999999999999999999               0               355667777532    


Q ss_pred             CCCCCCC------------------CCCCcccccccccCcc-----------------------------------cccc
Q psy8713         131 RPSCDAS------------------KGHTPKCVRECQENYD-----------------------------------VPYK  157 (309)
Q Consensus       131 ~~~C~~~------------------~~~~~~~~~~c~~~~~-----------------------------------~~~~  157 (309)
                      ..+|.++                  .+|+......|.....                                   ....
T Consensus       454 nqGC~GG~~~~A~kya~~~GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (693)
T PTZ00049        454 DQGCNGGFPYLVSKMAKLQGIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSE  533 (693)
T ss_pred             CCCcCCCcHHHHHHHHHHCCCCcCCccCCcCCCCCCCCCCCCcccccccccccccccccccccccccccccccccccccc
Confidence            1224333                  2344322233321000                                   0001


Q ss_pred             ccccceeeee-ee--------cchHHHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhhhhhhhcccCccc
Q psy8713         158 KDLNFGAKSY-SV--------SSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQL  228 (309)
Q Consensus       158 ~~~~~~~~~~-~v--------~~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~  228 (309)
                      .+..+. +.| .+        +.++++||++|+.+|||+|+|+++++|+.|++|||..+...++..+             
T Consensus       534 ~~r~y~-k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C-------------  599 (693)
T PTZ00049        534 PARWYA-KDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRC-------------  599 (693)
T ss_pred             ccceee-eeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCccccccccc-------------
Confidence            111111 222 11        2478899999999999999999988999999999985310000000             


Q ss_pred             CcCCccee-ccccccccCCCccCCceEEEEEeeccCCCC--ccEEEEEcCCCCCCCCCceEEEEccCCccccCcceEEEe
Q psy8713         229 GAEGAFTV-FDDLILYKSGKALGGHAIRILGWGEDEKSK--EKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGV  305 (309)
Q Consensus       229 ~~~~~~~~-~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g--~~YWiikNSWG~~WG~~Gy~~i~~g~n~cgi~~~~~~~~  305 (309)
                          ..+. -...++...+....+|||+|||||.+..+|  .+|||||||||+.||++|||||.||.|.|||++.+++++
T Consensus       600 ----~~d~~~~~~~~~~~G~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~  675 (693)
T PTZ00049        600 ----TVDLPKHNGVYNITGWEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIE  675 (693)
T ss_pred             ----CCccccccccccccccccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEe
Confidence                0000 000000022334579999999999763235  489999999999999999999999999999999999999


Q ss_pred             ecCC
Q psy8713         306 PKLD  309 (309)
Q Consensus       306 ~~~~  309 (309)
                      |++.
T Consensus       676 pd~~  679 (693)
T PTZ00049        676 PDFS  679 (693)
T ss_pred             eecc
Confidence            9973

>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

Probab=100.00  E-value=8.8e-39  Score=283.36  Aligned_cols=168  Identities=29%  Similarity=0.632  Sum_probs=128.2

Q ss_pred             CCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCCC------
Q psy8713          85 PANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDASK------  138 (309)
Q Consensus        85 P~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~~------  138 (309)
                      |++||||+.    +.++||+|||.|||||                    ..|++.+..|...   ....|.++.      
T Consensus         1 P~~~d~r~~----~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~---~~~gC~GG~~~~a~~   73 (210)
T cd02248           1 PESVDWREK----GAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS---GNNGCNGGNPDNAFE   73 (210)
T ss_pred             CCcccCCcC----CCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCC---CCCCCCCCCHHHhHH
Confidence            899999999    7799999999999999                    4567777777642   123344432      


Q ss_pred             ------------CCCcccccccccCccccccccccceeeee-eecc-hHHHHHHHHHhcCCEEEEEecccccccCCCceE
Q psy8713         139 ------------GHTPKCVRECQENYDVPYKKDLNFGAKSY-SVSS-NEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRF  204 (309)
Q Consensus       139 ------------~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~-~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy  204 (309)
                                  +|+......|.....     ...+.+..| .+.. ++++||++|+++|||+++|.+.++|+.|++|||
T Consensus        74 ~~~~~Gi~~e~~yPY~~~~~~C~~~~~-----~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy  148 (210)
T cd02248          74 YVKNGGLASESDYPYTGKDGTCKYNSS-----KVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIY  148 (210)
T ss_pred             HHHHCCcCccccCCccCCCCCccCCCC-----cccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCce
Confidence                        343332334432211     123334333 3443 478999999999999999999999999999999


Q ss_pred             eCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCc
Q psy8713         205 FVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNG  284 (309)
Q Consensus       205 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~G  284 (309)
                      ..+                                    .|....++|||+|||||++  .+.+|||||||||+.||++|
T Consensus       149 ~~~------------------------------------~~~~~~~~Hav~iVGy~~~--~~~~ywiv~NSWG~~WG~~G  190 (210)
T cd02248         149 SGP------------------------------------CCSNTNLNHAVLLVGYGTE--NGVDYWIVKNSWGTSWGEKG  190 (210)
T ss_pred             eCC------------------------------------CCCCCcCCEEEEEEEEeec--CCceEEEEEcCCCCccccCc
Confidence            843                                    2324567999999999998  68899999999999999999


Q ss_pred             eEEEEccCCccccCcceE
Q psy8713         285 LFKILRGKDECGIESSIT  302 (309)
Q Consensus       285 y~~i~~g~n~cgi~~~~~  302 (309)
                      ||||+++.|.|||++.+.
T Consensus       191 y~~i~~~~~~cgi~~~~~  208 (210)
T cd02248         191 YIRIARGSNLCGIASYAS  208 (210)
T ss_pred             EEEEEcCCCccCceeeee
Confidence            999999999999997654

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h

>PTZ00364 dipeptidyl-peptidase I precursor; Provisional

Probab=100.00  E-value=6e-38  Score=311.00  Aligned_cols=199  Identities=22%  Similarity=0.336  Sum_probs=131.4

Q ss_pred             CCCCCCceecCCCCCCCCCCccccCccC---CCCCc--------------------------CCCccccCCCCCC---CC
Q psy8713          81 DEDLPANFDSRTKWPNCPTIREIRDQGS---CGSCW--------------------------GCRPYEIAPCEHH---VN  128 (309)
Q Consensus        81 ~~~lP~~~DwR~~~~~cg~vtpVkdQg~---CGSCW--------------------------~cs~~~~~~C~~~---~~  128 (309)
                      ..+||++||||++. ++..|+|||||+.   |||||                          ..|+|++.+|...   ..
T Consensus       202 ~~~LP~sfDWR~~g-g~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~n~GCd  280 (548)
T PTZ00364        202 GDPPPAAWSWGDVG-GASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQYGQGCA  280 (548)
T ss_pred             ccCCCCccccCcCC-CCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCCCCCCC
Confidence            46799999999982 2247999999999   99999                          1355666677531   11


Q ss_pred             C-----------CCCCCCCCCC--CCccccc---ccccCccc-cc-cccccceeeeeeecchHHHHHHHHHhcCCEEEEE
Q psy8713         129 G-----------TRPSCDASKG--HTPKCVR---ECQENYDV-PY-KKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAF  190 (309)
Q Consensus       129 g-----------~~~~C~~~~~--~~~~~~~---~c~~~~~~-~~-~~~~~~~~~~~~v~~~~~~ik~~l~~~GPv~v~~  190 (309)
                      |           ..+.+.+..+  |+.....   .|...... .+ ..+..+....+.+..++++||++|+++|||+|+|
T Consensus       281 GG~p~~A~~yi~~~GI~tE~dY~~PY~~~dg~~~~Ck~~~~~~~y~~~~~~~I~gyy~~~~~e~~I~~eI~~~GPVsVaI  360 (548)
T PTZ00364        281 GGFPEEVGKFAETFGILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASV  360 (548)
T ss_pred             CCcHHHHHHHHHhCCcccccccCCCCCCCCCCCCCCCCCcccceeeeeeeEEecceeecCCcHHHHHHHHHHcCCeEEEE
Confidence            1           1122223334  4432111   24321110 00 0000111122334457889999999999999999


Q ss_pred             ecccccccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccc-------cccCCCccCCceEEEEEeeccC
Q psy8713         191 TVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLI-------LYKSGKALGGHAIRILGWGEDE  263 (309)
Q Consensus       191 ~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~HaV~iVGyg~~~  263 (309)
                      +++.+|+.|++|||...                         .|.+.++..       ...+.....||||+|||||.++
T Consensus       361 da~~df~~YksGiy~gi-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de  415 (548)
T PTZ00364        361 YANSDWYNCDENSTEDV-------------------------RYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDE  415 (548)
T ss_pred             EechHHHhcCCCCccCe-------------------------eccccccccccccCCcccccccccCCeEEEEEEecccC
Confidence            99989999999998620                         000000000       0001123569999999999753


Q ss_pred             CCCccEEEEEcCCCC--CCCCCceEEEEccCCccccCcceEEEee
Q psy8713         264 KSKEKYWLIANSWNT--DWGDNGLFKILRGKDECGIESSITAGVP  306 (309)
Q Consensus       264 ~~g~~YWiikNSWG~--~WG~~Gy~~i~~g~n~cgi~~~~~~~~~  306 (309)
                       ++.+|||||||||+  +|||+|||||+||.|+||||+.++++.|
T Consensus       416 -~G~~YWIVKNSWGt~~~WGE~GYfRI~RG~N~CGIes~~v~~~~  459 (548)
T PTZ00364        416 -NGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIESEVVVMYW  459 (548)
T ss_pred             -CCceEEEEECCCCCCCCcccCCeEEEEcCCCcccccceeeeeee
Confidence             67899999999999  9999999999999999999999998766

>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification

Probab=100.00  E-value=8.6e-38  Score=277.22  Aligned_cols=177  Identities=33%  Similarity=0.604  Sum_probs=123.7

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc---------------------CCCccccCCC--------CCCCCC-----
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW---------------------GCRPYEIAPC--------EHHVNG-----  129 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW---------------------~cs~~~~~~C--------~~~~~g-----  129 (309)
                      ||++||||+.+   +.++||+||+.|||||                     ..|++.+..|        .++...     
T Consensus         1 lP~~~D~r~~~---~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~   77 (219)
T PF00112_consen    1 LPKSFDWRDKG---GRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKY   77 (219)
T ss_dssp             STSSEEGGGTT---TCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHH
T ss_pred             CCCCEecccCC---CCcCccccCCcccccccchhccceeccccccccccccccccccccccccccccccccCccccccee
Confidence            79999999961   3699999999999999                     2233333334        332100     


Q ss_pred             --C-CCCCCCCCCCCcccc-cccccCccccccccccceeeee-eecc-hHHHHHHHHHhcCCEEEEEeccc-ccccCCCc
Q psy8713         130 --T-RPSCDASKGHTPKCV-RECQENYDVPYKKDLNFGAKSY-SVSS-NEKSIMKEIYEHGPVEGAFTVFD-DLILYKSG  202 (309)
Q Consensus       130 --~-~~~C~~~~~~~~~~~-~~c~~~~~~~~~~~~~~~~~~~-~v~~-~~~~ik~~l~~~GPv~v~~~~~~-~f~~Y~sG  202 (309)
                        . .+.+....+|+.... ..|.......    ..+....+ .+.. ++++||++|+++|||+++|.+.+ +|+.|++|
T Consensus        78 ~~~~~Gi~~e~~~pY~~~~~~~c~~~~~~~----~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~g  153 (219)
T PF00112_consen   78 IKNNNGIVTEEDYPYNGNENPTCKSKKSNS----YYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSG  153 (219)
T ss_dssp             HHHHTSBEBTTTS--SSSSSCSSCHSGGGE----EEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESS
T ss_pred             ecccCccccccccccccccccccccccccc----ccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccce
Confidence              1 233334344444333 3343221100    01222233 3333 58999999999999999999987 69999999


Q ss_pred             eEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCC
Q psy8713         203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGD  282 (309)
Q Consensus       203 iy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~  282 (309)
                      ||..                                    ..|....++|||+|||||++  .+++|||||||||++||+
T Consensus       154 i~~~------------------------------------~~~~~~~~~Hav~iVGy~~~--~~~~~wiv~NSWG~~WG~  195 (219)
T PF00112_consen  154 IYDP------------------------------------PDCSNESGGHAVLIVGYDDE--NGKGYWIVKNSWGTDWGD  195 (219)
T ss_dssp             EECS------------------------------------TSSSSSSEEEEEEEEEEEEE--TTEEEEEEE-SBTTTSTB
T ss_pred             eeec------------------------------------cccccccccccccccccccc--cceeeEeeehhhCCccCC
Confidence            9994                                    23555678999999999999  799999999999999999


Q ss_pred             CceEEEEccCC-ccccCcceEEEe
Q psy8713         283 NGLFKILRGKD-ECGIESSITAGV  305 (309)
Q Consensus       283 ~Gy~~i~~g~n-~cgi~~~~~~~~  305 (309)
                      +|||||+|+.+ +|+|++.+++++
T Consensus       196 ~Gy~~i~~~~~~~c~i~~~~~~~~  219 (219)
T PF00112_consen  196 NGYFRISYDYNNECGIESQAVYPI  219 (219)
T ss_dssp             TTEEEEESSSSSGGGTTSSEEEEE
T ss_pred             CeEEEEeeCCCCcCccCceeeecC
Confidence            99999999997 999999999874

; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....

>KOG1544|consensus

Probab=100.00  E-value=5.5e-37  Score=279.64  Aligned_cols=239  Identities=33%  Similarity=0.643  Sum_probs=169.9

Q ss_pred             ccccCCCCCCcccccc--cCCCCcHHHHHHHhCCCCCCCCCCCC-CCcccccCCCCCCCCCceecCCCCCCCCCCccccC
Q psy8713          29 GIVSGGAYGSKQAEKN--SLSNIPRAHLKSWMGVHPDYNLPANR-LPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRD  105 (309)
Q Consensus        29 ~~~~~~~~~s~~~g~N--f~~~~~~e~~~~~lg~~~~~~~~~~~-~~~~~~~~~~~~~lP~~~DwR~~~~~cg~vtpVkd  105 (309)
                      +-+..++| +|+++.-  |+.++.++-||-.||+.++..  +.. ..+.+...+...+||++||.|.|||  +++.|+.|
T Consensus       154 E~in~G~Y-gW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~--sv~nMNEi~~~l~p~~~LPE~F~As~KWp--~liH~plD  228 (470)
T KOG1544|consen  154 EAINQGNY-GWQAGNYSAFWGMTLDDGIKYRLGTLRPSS--SVMNMNEIYTVLNPGEVLPEAFEASEKWP--NLIHEPLD  228 (470)
T ss_pred             HHHhcCCc-cccccchhhhhcccccccceeeecccCchh--hhhhHHhHhhccCcccccchhhhhhhcCC--ccccCccc
Confidence            44566777 6676654  999999999999999987652  111 2233333444678999999999999  78999999


Q ss_pred             ccCCCCCc----------------------CCCccccCCCCCCCCCCCCCCCCCC-------------------------
Q psy8713         106 QGSCGSCW----------------------GCRPYEIAPCEHHVNGTRPSCDASK-------------------------  138 (309)
Q Consensus       106 Qg~CGSCW----------------------~cs~~~~~~C~~~~~g~~~~C~~~~-------------------------  138 (309)
                      ||+|+++|                      ..|+|.+.+|....   ...|.++.                         
T Consensus       229 QgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~---q~GC~gG~lDRAWWYlRKrGvVsdhCYP~~~dQ  305 (470)
T KOG1544|consen  229 QGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQ---QQGCRGGRLDRAWWYLRKRGVVSDHCYPFSGDQ  305 (470)
T ss_pred             cCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhh---hccCccCcccchheeeecccccccccccccCCC
Confidence            99999999                      34566666775431   11233322                         


Q ss_pred             -CCCcccc--------------cccccCccccccccccce-eeeeeecchHHHHHHHHHhcCCEEEEEecccccccCCCc
Q psy8713         139 -GHTPKCV--------------RECQENYDVPYKKDLNFG-AKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSG  202 (309)
Q Consensus       139 -~~~~~~~--------------~~c~~~~~~~~~~~~~~~-~~~~~v~~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sG  202 (309)
                       .+...|.              +.|..++.   +....|. ..-|.|.++|++||++|+++|||.+.|.|+++|+.|++|
T Consensus       306 ~~~~~~C~m~sR~~grgkRqat~~CPn~~~---~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VHEDFF~YkgG  382 (470)
T KOG1544|consen  306 AGPAPPCMMHSRAMGRGKRQATAHCPNSYV---NSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVHEDFFLYKGG  382 (470)
T ss_pred             CCCCCCceeeccccCcccccccCcCCCccc---ccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Confidence             1112221              11222111   0001121 234688889999999999999999999999999999999


Q ss_pred             eEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCC---CCccEEEEEcCCCCC
Q psy8713         203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEK---SKEKYWLIANSWNTD  279 (309)
Q Consensus       203 iy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~---~g~~YWiikNSWG~~  279 (309)
                      ||.-...            .              +..   .......+.|+|.|.|||++..   ...+|||..||||+.
T Consensus       383 iY~H~~~------------~--------------~~~---~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~  433 (470)
T KOG1544|consen  383 IYSHTPV------------S--------------LGR---PERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPA  433 (470)
T ss_pred             eeecccc------------c--------------cCC---chhhhhcccceEEEeecccccCCCCCeeEEEEeecccccc
Confidence            9982100            0              000   1223346799999999998753   456899999999999


Q ss_pred             CCCCceEEEEccCCccccCcceEEEeec
Q psy8713         280 WGDNGLFKILRGKDECGIESSITAGVPK  307 (309)
Q Consensus       280 WG~~Gy~~i~~g~n~cgi~~~~~~~~~~  307 (309)
                      |||+|||||.||+|+|.||+.+.+|+..
T Consensus       434 WGE~GYFriLRGvNecdIEsfvIgAWGr  461 (470)
T KOG1544|consen  434 WGERGYFRILRGVNECDIESFVIGAWGR  461 (470)
T ss_pred             cccCceEEEeccccchhhhHhhhhhhhc
Confidence            9999999999999999999999888754

>PTZ00462 Serine-repeat antigen protein; Provisional

Probab=100.00  E-value=5.7e-34  Score=293.33  Aligned_cols=185  Identities=26%  Similarity=0.481  Sum_probs=129.6

Q ss_pred             CceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCC--------
Q psy8713          86 ANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDAS--------  137 (309)
Q Consensus        86 ~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~--------  137 (309)
                      +.+|+.+++++|..+.||||||.|||||                    ..|++++.+|....  ....|.++        
T Consensus       530 ~yCdR~kD~~sC~s~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~--gn~GC~GG~~~~efl~  607 (1004)
T PTZ00462        530 EFCNRLKDENNCISKIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGE--HKDRCDEGSNPLEFLQ  607 (1004)
T ss_pred             hhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhccccc--CCCCCCCCCcHHHHHH
Confidence            6789999999998899999999999999                    34555556664310  01223332        


Q ss_pred             ------------CCCCcc--cccccccCcc-----------cccccc--ccceeeee-eecc---------hHHHHHHHH
Q psy8713         138 ------------KGHTPK--CVRECQENYD-----------VPYKKD--LNFGAKSY-SVSS---------NEKSIMKEI  180 (309)
Q Consensus       138 ------------~~~~~~--~~~~c~~~~~-----------~~~~~~--~~~~~~~~-~v~~---------~~~~ik~~l  180 (309)
                                  .+|+..  ....|.....           +.+...  .......| .+..         -++.||++|
T Consensus       608 yI~e~GgLptESdYPYt~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI  687 (1004)
T PTZ00462        608 IIEDNGFLPADSNYLYNYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEI  687 (1004)
T ss_pred             HHHHcCCCcccccCCCccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHH
Confidence                        234421  2234532110           000000  01111112 1111         146899999


Q ss_pred             HhcCCEEEEEecccccccCC-CceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEe
Q psy8713         181 YEHGPVEGAFTVFDDLILYK-SGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGW  259 (309)
Q Consensus       181 ~~~GPv~v~~~~~~~f~~Y~-sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGy  259 (309)
                      +.+|||+|+|.+. +|+.|. +|||..                                    ..|+...++|||+||||
T Consensus       688 ~~kGPVaV~IdAs-df~~Y~~sGIyv~------------------------------------~~Cgs~~~nHAVlIVGY  730 (1004)
T PTZ00462        688 MNKGSVIAYIKAE-NVLGYEFNGKKVQ------------------------------------NLCGDDTADHAVNIVGY  730 (1004)
T ss_pred             HhcCCEEEEEEee-hHHhhhcCCcccc------------------------------------CCCCCCcCCceEEEEEe
Confidence            9999999999984 788884 898763                                    45776667999999999


Q ss_pred             eccC---CCCccEEEEEcCCCCCCCCCceEEEEc-cCCccccCcceEEEeecCC
Q psy8713         260 GEDE---KSKEKYWLIANSWNTDWGDNGLFKILR-GKDECGIESSITAGVPKLD  309 (309)
Q Consensus       260 g~~~---~~g~~YWiikNSWG~~WG~~Gy~~i~~-g~n~cgi~~~~~~~~~~~~  309 (309)
                      |.+.   +.+++|||||||||++|||+|||||+| ++++|||++++++++|+||
T Consensus       731 Gt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~i~t~~~fn~d  784 (1004)
T PTZ00462        731 GNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIHSVVIFNID  784 (1004)
T ss_pred             cccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccchheeeeeEeec
Confidence            9742   246799999999999999999999998 7899999999999999987

>smart00645 Pept_C1 Papain family cysteine protease

Probab=100.00  E-value=4.8e-33  Score=241.34  Aligned_cols=151  Identities=34%  Similarity=0.756  Sum_probs=103.8

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCCCCCCcc
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDASKGHTPK  143 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~~~~~~~  143 (309)
                      ||++||||++    +.++||+||+.|||||                    +.|++++..|...   ....|.++.... .
T Consensus         1 lP~~~D~R~~----~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~---~~~gC~GG~~~~-a   72 (174)
T smart00645        1 LPESFDWRKK----GAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTG---GNNGCNGGLPDN-A   72 (174)
T ss_pred             CCCcCccccc----CCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCC---CCCCCCCcCHHH-H
Confidence            6999999999    6799999999999999                    4566777777652   122466543210 0


Q ss_pred             cccccccCccccccccccceeeeeeecchHHHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhhhhhhhcc
Q psy8713         144 CVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRD  223 (309)
Q Consensus       144 ~~~~c~~~~~~~~~~~~~~~~~~~~v~~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~  223 (309)
                       ..-.....-++.+++.+|..                      ++.+.+ .+|+.|++|||+.+                
T Consensus        73 -~~~~~~~~Gi~~e~~~PY~~----------------------~~~~~~-~~f~~Y~~Gi~~~~----------------  112 (174)
T smart00645       73 -FEYIKKNGGLETESCYPYTG----------------------SVAIDA-SDFQFYKSGIYDHP----------------  112 (174)
T ss_pred             -HHHHHHcCCcccccccCccc----------------------EEEEEc-ccccCCcCeEECCC----------------
Confidence             00000000001111111110                      444544 46999999999832                


Q ss_pred             cCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEccC-CccccCcceE
Q psy8713         224 NTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DECGIESSIT  302 (309)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g~-n~cgi~~~~~  302 (309)
                                          .|+...++|+|+|||||.+ .++++|||||||||+.|||+|||||.|+. |.|+|+....
T Consensus       113 --------------------~~~~~~~~Hav~ivGyg~~-~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~~  171 (174)
T smart00645      113 --------------------GCGSGTLDHAVLIVGYGTE-ENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVA  171 (174)
T ss_pred             --------------------CCCCCcccEEEEEEEEeec-CCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeeee
Confidence                                3555457999999999975 26789999999999999999999999998 9999977664


Q ss_pred             E
Q psy8713         303 A  303 (309)
Q Consensus       303 ~  303 (309)
                      +
T Consensus       172 ~  172 (174)
T smart00645      172 S  172 (174)
T ss_pred             e
Confidence            3

>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

Probab=99.97  E-value=2.4e-30  Score=229.75  Aligned_cols=169  Identities=27%  Similarity=0.444  Sum_probs=111.9

Q ss_pred             ceecCCCCCCCCCCccccCccCCCCCc----------------------CCCccccCCCCCCCCC-CCCCCCCCC-----
Q psy8713          87 NFDSRTKWPNCPTIREIRDQGSCGSCW----------------------GCRPYEIAPCEHHVNG-TRPSCDASK-----  138 (309)
Q Consensus        87 ~~DwR~~~~~cg~vtpVkdQg~CGSCW----------------------~cs~~~~~~C~~~~~g-~~~~C~~~~-----  138 (309)
                      .+|||..    + ++||+|||.||+||                      ..|++++..|...... ....|.++.     
T Consensus         1 ~~d~r~~----~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~   75 (223)
T cd02619           1 SVDLRPL----R-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSAL   75 (223)
T ss_pred             CCcchhc----C-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHH
Confidence            4799998    6 99999999999999                      3455566666432100 013444433     


Q ss_pred             --------------CCCcccccccccCccccccccccceeeee-eec-chHHHHHHHHHhcCCEEEEEecccccccCCCc
Q psy8713         139 --------------GHTPKCVRECQENYDVPYKKDLNFGAKSY-SVS-SNEKSIMKEIYEHGPVEGAFTVFDDLILYKSG  202 (309)
Q Consensus       139 --------------~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~-~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sG  202 (309)
                                    +|+..-...|..... .......+....| .+. .++++||++|+++|||+++|.+.++|..|++|
T Consensus        76 ~~~~~~~Gi~~e~~~Py~~~~~~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~~  154 (223)
T cd02619          76 LKLVALKGIPPEEDYPYGAESDGEEPKSE-AALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEG  154 (223)
T ss_pred             HHHHHHcCCCccccCCCCCCCCCCCCCCc-cchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcccchhcccCc
Confidence                          222211111111000 0001122333333 233 25789999999999999999999999999999


Q ss_pred             eEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCC
Q psy8713         203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGD  282 (309)
Q Consensus       203 iy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~  282 (309)
                      +|..+..                               ....+....++|||+|||||++...+++|||||||||+.||+
T Consensus       155 ~~~~~~~-------------------------------~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~  203 (223)
T cd02619         155 IIYEEIV-------------------------------YLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGD  203 (223)
T ss_pred             ccccccc-------------------------------ccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCcccc
Confidence            8741000                               003355667899999999998832378999999999999999


Q ss_pred             CceEEEEccC
Q psy8713         283 NGLFKILRGK  292 (309)
Q Consensus       283 ~Gy~~i~~g~  292 (309)
                      +||+||+++.
T Consensus       204 ~Gy~~i~~~~  213 (223)
T cd02619         204 NGYGRISYED  213 (223)
T ss_pred             CCEEEEehhh
Confidence            9999999973

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str

>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=7.7e-22  Score=184.23  Aligned_cols=45  Identities=36%  Similarity=0.664  Sum_probs=39.2

Q ss_pred             ccCCceEEEEEeeccC--------CCCccEEEEEcCCCCCCCCCceEEEEccC
Q psy8713         248 ALGGHAIRILGWGEDE--------KSKEKYWLIANSWNTDWGDNGLFKILRGK  292 (309)
Q Consensus       248 ~~~~HaV~iVGyg~~~--------~~g~~YWiikNSWG~~WG~~Gy~~i~~g~  292 (309)
                      ...+|||+||||++..        +.+.+.||||||||++||++|||||+...
T Consensus       262 ~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~y  314 (372)
T COG4870         262 ENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYY  314 (372)
T ss_pred             ccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeee
Confidence            5679999999999864        24567999999999999999999999853

>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)

Probab=99.55  E-value=7.5e-15  Score=143.40  Aligned_cols=96  Identities=24%  Similarity=0.255  Sum_probs=64.6

Q ss_pred             HHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEE
Q psy8713         178 KEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRIL  257 (309)
Q Consensus       178 ~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iV  257 (309)
                      ++|.+.+||.++.++. .|+.|++||+....  ..+-.+.       +.      .+.+-.+-.+ .+.....+|||+||
T Consensus       303 ~~L~~g~pV~~g~Dv~-~~~~~k~GI~d~~~--~~~~~~f-------~~------~~~~~KaeRl-~~~es~~tHAM~iv  365 (437)
T cd00585         303 AQLKDGEPVWFGCDVG-KFSDRKSGILDTDL--FDYELLF-------GI------DFGLNKAERL-DYGESLMTHAMVLT  365 (437)
T ss_pred             HHHhcCCCEEEEEEcC-hhhccCCccccCcc--cchhhhc-------Cc------cccCCHHHHH-hhcCCcCCeEEEEE
Confidence            5778889999999996 57799999996310  0000000       00      0000011111 23344569999999


Q ss_pred             EeeccCCCCc-cEEEEEcCCCCCCCCCceEEEEcc
Q psy8713         258 GWGEDEKSKE-KYWLIANSWNTDWGDNGLFKILRG  291 (309)
Q Consensus       258 Gyg~~~~~g~-~YWiikNSWG~~WG~~Gy~~i~~g  291 (309)
                      |||.+. +|+ .||+||||||+.||++|||+|+++
T Consensus       366 Gv~~D~-~g~p~yw~VkNSWG~~~G~~Gy~~ms~~  399 (437)
T cd00585         366 GVDLDE-DGKPVKWKVENSWGEKVGKKGYFVMSDD  399 (437)
T ss_pred             EEEecC-CCCcceEEEEcccCCCCCCCcceehhHH
Confidence            999873 465 699999999999999999999874

The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w

>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.64  E-value=1.7e-07  Score=92.05  Aligned_cols=108  Identities=25%  Similarity=0.269  Sum_probs=61.5

Q ss_pred             eeeeecch--HHHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceecccccc
Q psy8713         165 KSYSVSSN--EKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLIL  242 (309)
Q Consensus       165 ~~~~v~~~--~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      ..++++-+  .+.+.+.|...-||..+-+|.+ +..-+.||.+.+  .-..-.+.+..       ....++-+       
T Consensus       289 ~ylNvpid~lk~~~i~~Lk~G~~VwfgcDV~k-~~~~k~Gi~D~~--~~d~~~~fg~~-------~~~~K~~R-------  351 (438)
T PF03051_consen  289 RYLNVPIDELKDAAIKSLKAGYPVWFGCDVGK-FFDRKNGIMDTD--LYDYDSLFGVD-------FNMSKAER-------  351 (438)
T ss_dssp             EEEE--HHHHHHHHHHHHHTT--EEEEEETTT-TEETTTTEE-TT--SB-HHHHHT---------S-S-HHHH-------
T ss_pred             eEeccCHHHHHHHHHHHHHcCCcEEEeccCCc-cccccchhhccc--hhhhhhhhccc-------cccCHHHH-------
Confidence            34577642  2344556666779999999975 456688998732  11111111111       11111110       


Q ss_pred             ccCCCccCCceEEEEEeeccCCCCc-cEEEEEcCCCCCCCCCceEEEEc
Q psy8713         243 YKSGKALGGHAIRILGWGEDEKSKE-KYWLIANSWNTDWGDNGLFKILR  290 (309)
Q Consensus       243 ~~~~~~~~~HaV~iVGyg~~~~~g~-~YWiikNSWG~~WG~~Gy~~i~~  290 (309)
                      -.......+|||+|||...+. +|. .+|+|+||||+..|.+|||.|+.
T Consensus       352 l~~~eS~~tHAM~itGv~~D~-~g~p~~wkVeNSWG~~~g~kGy~~msd  399 (438)
T PF03051_consen  352 LDYGESTMTHAMVITGVDLDE-DGKPVRWKVENSWGTDNGDKGYFYMSD  399 (438)
T ss_dssp             HHTTSS--EEEEEEEEEEE-T-TSSEEEEEEE-SBTTTSTBTTEEEEEH
T ss_pred             HHhCCCCCceeEEEEEEEecc-CCCeeEEEEEcCCCCCCCCCcEEEECH
Confidence            012334569999999999864 555 69999999999999999999975

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....

>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]

Probab=96.40  E-value=0.0013  Score=61.94  Aligned_cols=44  Identities=32%  Similarity=0.555  Sum_probs=35.9

Q ss_pred             CccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEc
Q psy8713         247 KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILR  290 (309)
Q Consensus       247 ~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~  290 (309)
                      .....|||+|.|.+-++....-=|.|.||||.+-|.+|||-++.
T Consensus       358 eSLmTHAMvlTGvd~d~~g~p~rwkVENSWG~d~G~~GyfvaSd  401 (444)
T COG3579         358 ESLMTHAMVLTGVDLDETGNPLRWKVENSWGKDVGKKGYFVASD  401 (444)
T ss_pred             hHHHHHHHHhhccccccCCCceeeEeecccccccCCCceEeehH
Confidence            34568999999999765334457999999999999999997753

>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=95.85  E-value=0.0068  Score=42.63  Aligned_cols=35  Identities=9%  Similarity=0.060  Sum_probs=27.7

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHHH
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHL   54 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~   54 (309)
                      ++....+.|.+||  . .+-.+|++|+|.|+|++.||+
T Consensus        24 ~F~~N~~~I~~~N--~-~~~~~~~~~~N~fsD~t~eEf   58 (58)
T PF08246_consen   24 IFKENLRRIEEHN--A-NGNNTYKLGLNQFSDMTPEEF   58 (58)
T ss_dssp             HHHHHHHHHHHHH--H-TTSSSEEE-SSTTTTSSHHHH
T ss_pred             HHHHHHHHHHHHh--c-CCCCCeEEeCccccCcChhhC
Confidence            4677888999999  3 333789999999999999886

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....

>KOG1543|consensus

Probab=94.22  E-value=0.033  Score=53.09  Aligned_cols=28  Identities=50%  Similarity=0.927  Sum_probs=26.1

Q ss_pred             cCCCCCCCcchHHHHHHHHhcccc-CCCC
Q psy8713           9 CGFGCNGGFPGMAWRYWVKSGIVS-GGAY   36 (309)
Q Consensus         9 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~   36 (309)
                      ||.||+||++..||+||.++|+++ ..+|
T Consensus       170 ~~~GC~GG~~~~A~~yi~~~G~~t~~~~Y  198 (325)
T KOG1543|consen  170 CGDGCNGGEPKNAFKYIKKNGGVTECENY  198 (325)
T ss_pred             CCCCcCCCCHHHHHHHHHHhCCCCCCcCC
Confidence            689999999999999999999999 6776

>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A

Probab=93.63  E-value=0.034  Score=36.60  Aligned_cols=27  Identities=30%  Similarity=0.348  Sum_probs=17.1

Q ss_pred             CCcccccccCCCCcHHHHHHHhCCCCCC
Q psy8713          37 GSKQAEKNSLSNIPRAHLKSWMGVHPDY   64 (309)
Q Consensus        37 ~s~~~g~Nf~~~~~~e~~~~~lg~~~~~   64 (309)
                      .+|++|.|| ..++.+++++|||+.+..
T Consensus        14 ~tWkAG~NF-~~~~~~~ik~LlGv~~~~   40 (41)
T PF08127_consen   14 TTWKAGRNF-ENTSIEYIKRLLGVLPDP   40 (41)
T ss_dssp             -SEEE-----SSB-HHHHHHCS-B-TTS
T ss_pred             CcccCCCCC-CCCCHHHHHHHcCCCCCC
Confidence            599999996 999999999999997653

Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.

>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A

Probab=93.08  E-value=0.31  Score=39.13  Aligned_cols=59  Identities=24%  Similarity=0.363  Sum_probs=35.0

Q ss_pred             cchHHHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCcc
Q psy8713         170 SSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKAL  249 (309)
Q Consensus       170 ~~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (309)
                      ..+..+|+++|.+..||.+.+...-.  ......+.                                         ...
T Consensus        86 ~~~~~~i~~~i~~G~Pvi~~~~~~~~--~~~~~~~~-----------------------------------------~~~  122 (144)
T PF13529_consen   86 DASFDDIKQEIDAGRPVIVSVNSGWR--PPNGDGYD-----------------------------------------GTY  122 (144)
T ss_dssp             TS-HHHHHHHHHTT--EEEEEETTSS----TTEEEE-----------------------------------------E-T
T ss_pred             CCcHHHHHHHHHCCCcEEEEEEcccc--cCCCCCcC-----------------------------------------CCc
Confidence            34678899999998899998864211  00112222                                         223


Q ss_pred             CCceEEEEEeeccCCCCccEEEEEcCC
Q psy8713         250 GGHAIRILGWGEDEKSKEKYWLIANSW  276 (309)
Q Consensus       250 ~~HaV~iVGyg~~~~~g~~YWiikNSW  276 (309)
                      ..|.|+|+||.++    . +++|-.+|
T Consensus       123 ~~H~vvi~Gy~~~----~-~~~v~DP~  144 (144)
T PF13529_consen  123 GGHYVVIIGYDED----G-YVYVNDPW  144 (144)
T ss_dssp             TEEEEEEEEE-SS----E--EEEE-TT
T ss_pred             CCEEEEEEEEeCC----C-EEEEeCCC
Confidence            5999999999986    2 78888776

>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)

Probab=90.55  E-value=0.11  Score=35.81  Aligned_cols=34  Identities=6%  Similarity=0.026  Sum_probs=25.8

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHH
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAH   53 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~   53 (309)
                      ++...+++|..|+..  +. .+|++|+|.|+|++.||
T Consensus        24 ~f~~n~~~i~~~N~~--~~-~~~~~~~N~fsDlt~eE   57 (57)
T smart00848       24 IFKENLKFIEEHNKK--ND-HSYTLGLNQFADLTNEE   57 (57)
T ss_pred             HHHHHHHHHHHHHhc--CC-CCeEecCcccccCCCCC
Confidence            456677788888843  23 68999999999988764

This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s

>PTZ00364 dipeptidyl-peptidase I precursor; Provisional

Probab=87.46  E-value=0.37  Score=49.13  Aligned_cols=38  Identities=29%  Similarity=0.621  Sum_probs=31.6

Q ss_pred             ccccccc---CCCCCCCcchHHHHHHHHhccccCCCC-CCcc
Q psy8713           3 TQQIRLC---GFGCNGGFPGMAWRYWVKSGIVSGGAY-GSKQ   40 (309)
Q Consensus         3 ~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~-~s~~   40 (309)
                      .||+=.|   +.||+||.+..|++|+.++||+++..| ..|+
T Consensus       266 ~QqLVDCs~~n~GCdGG~p~~A~~yi~~~GI~tE~dY~~PY~  307 (548)
T PTZ00364        266 ARHVLDCSQYGQGCAGGFPEEVGKFAETFGILTTDSYYIPYD  307 (548)
T ss_pred             HHHHhcccCCCCCCCCCcHHHHHHHHHhCCcccccccCCCCC
Confidence            3566667   689999999999999999999999987 2454

>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

Probab=84.23  E-value=0.65  Score=42.06  Aligned_cols=36  Identities=33%  Similarity=0.537  Sum_probs=30.0

Q ss_pred             ccccccc--CCCCCCCcchHHHHHHHHhccccCCCCCCc
Q psy8713           3 TQQIRLC--GFGCNGGFPGMAWRYWVKSGIVSGGAYGSK   39 (309)
Q Consensus         3 ~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~s~   39 (309)
                      .||+=.|  +.||+||.+..|++|++++|+.++..| .|
T Consensus        59 ~Q~lldC~~~~gC~GG~~~~a~~~~~~~Gl~~e~~y-PY   96 (239)
T cd02698          59 VQVVIDCAGGGSCHGGDPGGVYEYAHKHGIPDETCN-PY   96 (239)
T ss_pred             HHHHHhCCCCCCccCcCHHHHHHHHHHcCcCCCCee-CC
Confidence            3566566  579999999999999999999998886 44

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.

>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

Probab=81.65  E-value=0.87  Score=41.16  Aligned_cols=37  Identities=43%  Similarity=1.048  Sum_probs=31.2

Q ss_pred             ccccccc----CCCCCCCcchHHHHHHHHhccccCCCCCCcc
Q psy8713           3 TQQIRLC----GFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQ   40 (309)
Q Consensus         3 ~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~s~~   40 (309)
                      .||+=.|    ..||+||.+..|++|+.++|+.++..| .|+
T Consensus        55 ~Q~lidC~~~~~~gC~GG~~~~a~~~i~~~G~~~e~~y-PY~   95 (236)
T cd02620          55 AQDLLSCCSGCGDGCNGGYPDAAWKYLTTTGVVTGGCQ-PYT   95 (236)
T ss_pred             HHHHHhhcCCCCCCCCCCCHHHHHHHHHhcCCCcCCEe-cCc
Confidence            4666666    679999999999999999999998886 553

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane

>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

Probab=80.78  E-value=1  Score=40.72  Aligned_cols=37  Identities=32%  Similarity=0.651  Sum_probs=30.7

Q ss_pred             cccccc---CCCCCCCcchHHHHHHHHhccccCCCCCCccc
Q psy8713           4 QQIRLC---GFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQA   41 (309)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~s~~~   41 (309)
                      ||+=.|   ..||+||.+.+|+.|+.++|++++..| .|+.
T Consensus        61 q~l~dC~~~~~GC~GG~~~~a~~~~~~~Gi~~e~~y-PY~~  100 (243)
T cd02621          61 QHVLSCSQYSQGCDGGFPFLVGKFAEDFGIVTEDYF-PYTA  100 (243)
T ss_pred             HHhhhhcCCCCCCCCCCHHHHHHHHHhcCcCCCcee-CCCC
Confidence            555555   469999999999999999999999887 5644

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc

>PTZ00049 cathepsin C-like protein; Provisional

Probab=80.21  E-value=1.3  Score=46.13  Aligned_cols=38  Identities=32%  Similarity=0.545  Sum_probs=32.0

Q ss_pred             ccccccc---CCCCCCCcchHHHHHHHHhccccCCCCCCccc
Q psy8713           3 TQQIRLC---GFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQA   41 (309)
Q Consensus         3 ~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~s~~~   41 (309)
                      .||+=.|   ..||+||.+..|++|+.++||.++..| .|+.
T Consensus       444 ~QqLLDCs~~nqGC~GG~~~~A~kya~~~GI~tEscY-PY~a  484 (693)
T PTZ00049        444 IQTVLSCSFYDQGCNGGFPYLVSKMAKLQGIPLDKVF-PYTA  484 (693)
T ss_pred             HHHhcccCCCCCCcCCCcHHHHHHHHHHCCCCcCCcc-CCcC
Confidence            3667777   369999999999999999999999987 5643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	309
1qdq_A	253	X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074		9e-50
1pbh_A	317	Crystal Structure Of Human Recombinant Procathepsin		1e-49
3k9m_A	254	Cathepsin B In Complex With Stefin A Length = 254		2e-49
1huc_B	205	The Refined 2.15 Angstroms X-Ray Crystal Structure		2e-49
3ai8_B	256	Cathepsin B In Complex With The Nitroxoline Length		2e-49
1gmy_A	261	Cathepsin B Complexed With Dipeptidyl Nitrile Inhib		2e-49
1ito_A	256	Crystal Structure Analysis Of Bovine Spleen Catheps		3e-49
1sp4_B	205	Crystal Structure Of Ns-134 In Complex With Bovine		4e-49
3cbj_A	266	Chagasin-cathepsin B Complex Length = 266		3e-48
1mir_A	322	Rat Procathepsin B Length = 322		5e-47
1cpj_A	260	Crystal Structures Of Recombinant Rat Cathepsin B A		6e-47
1cte_A	254	Crystal Structures Of Recombinant Rat Cathepsin B A		6e-47
3qsd_A	254	Structure Of Cathepsin B1 From Schistosoma Mansoni		9e-37
3hhi_A	325	Crystal Structure Of Cathepsin B From T. Brucei In		7e-26
4hwy_A	340	Trypanosoma Brucei Procathepsin B Solved From 40 Fs		7e-26
3mor_A	317	Crystal Structure Of Cathepsin B From Trypanosoma B		8e-26
3pdf_A	441	Discovery Of Novel Cyanamide-Based Inhibitors Of Ca		2e-17
1jqp_A	438	Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric		2e-15
1k3b_C	69	Crystal Structure Of Human Dipeptidyl Peptidase I (		6e-12
1huc_A	47	The Refined 2.15 Angstroms X-Ray Crystal Structure		6e-10
1sp4_A	48	Crystal Structure Of Ns-134 In Complex With Bovine		7e-10
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		3e-08
8pch_A	220	Crystal Structure Of Porcine Cathepsin H Determined		7e-08
3qj3_A	331	Structure Of Digestive Procathepsin L2 Proteinase F		1e-07
1aim_A	215	Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor		2e-07
1ewp_A	215	Cruzain Bound To Mor-Leu-Hpq Length = 215		2e-07
3iut_A	221	The Crystal Structure Of Cruzain In Complex With A		6e-07
3hd3_A	215	High Resolution Crystal Structure Of Cruzain Bound		6e-07
1m6d_A	214	Crystal Structure Of Human Cathepsin F Length = 214		3e-06
3d6s_A	223	Crystal Structure Of Mite Allergen Der F 1 Length =		6e-06
2p7u_A	215	The Crystal Structure Of Rhodesain, The Major Cyste		8e-06
1fh0_A	221	Crystal Structure Of Human Cathepsin V Complexed Wi		8e-06
3h6s_A	221	Strucure Of Clitocypin - Cathepsin V Complex Length		9e-06
2fo5_A	262	Crystal Structure Of Recombinant Barley Cysteine En		1e-05
3hha_A	220	Crystal Structure Of Cathepsin L In Complex With Az		2e-05
3h89_A	220	A Combined Crystallographic And Molecular Dynamics		2e-05
3of8_A	221	Structural Basis For Reversible And Irreversible In		2e-05
3iv2_A	220	Crystal Structure Of Mature Apo-Cathepsin L C25a Mu		2e-05
3bc3_A	220	Exploring Inhibitor Binding At The S Subsites Of Ca		2e-05
3hwn_A	258	Cathepsin L With Az13010160 Length = 258		2e-05
2nqd_B	221	Crystal Structure Of Cysteine Protease Inhibitor, C		2e-05
3kse_A	220	Unreduced Cathepsin L In Complex With Stefin A Leng		2e-05
3qt4_A	329	Structure Of Digestive Procathepsin L 3 Of Tenebrio		3e-05
1aec_A	218	Crystal Structure Of Actinidin-E-64 Complex+ Length		3e-05
2act_A	220	Crystallographic Refinement Of The Structure Of Act		3e-05
1cs8_A	316	Crystal Structure Of Procathepsin L Length = 316		4e-05
3tnx_A	363	Structure Of The Precursor Of A Thermostable Varian		5e-05
1khp_A	212	Monoclinic Form Of Papain/zlfg-dam Covalent Complex		5e-05
1cjl_A	312	Crystal Structure Of A Cysteine Protease Proform Le		6e-05
2wbf_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		9e-05
3f75_A	224	Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In		1e-04
3p5w_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		2e-04
3h7d_A	215	The Crystal Structure Of The Cathepsin K Variant M5		2e-04
2vhs_A	217	Cathsilicatein, A Chimera Length = 217		2e-04
1pip_A	212	Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Al		2e-04
1s4v_A	229	The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst		2e-04
3ch2_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		2e-04
1ppp_A	212	Crystal Structure Of Papain-E64-C Complex. Binding		2e-04
2as8_A	222	Crystal Structure Of Mature And Fully Active Der P		2e-04
1ef7_A	242	Crystal Structure Of Human Cathepsin X Length = 242		3e-04
1deu_A	277	Crystal Structure Of Human Procathepsin X: A Cystei		3e-04
3rvw_A	222	Crystal Structure Of Der P 1 Complexed With Fab 4c1		3e-04
3p5u_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		3e-04
2fye_A	217	Mutant Human Cathepsin S With Irreversible Inhibito		4e-04
2cio_A	212	The High Resolution X-Ray Structure Of Papain Compl		5e-04
3ima_A	212	Complex Strcuture Of Tarocystatin And Papain Length		7e-04
1stf_E	212	The Refined 2.4 Angstroms X-Ray Crystal Structure O		7e-04
1o0e_A	208	1.9 Angstrom Crystal Structure Of A Plant Cysteine		8e-04

>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253

Iteration: 1
 Score =  193 bits (491), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 99/193 (51%), Positives = 121/193 (62%), Gaps = 40/193 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D +FG  SYSV++NE
Sbjct: 99  GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNE 157
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAF+V+ D +LYKSG +                             
Sbjct: 158 KEIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 188
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    + SG+ +GGHAIRILGWG +  +   YWL+ANSWNTDWGDNG FKILRG+D
Sbjct: 189 --------QHVSGEIMGGHAIRILGWGVENGT--PYWLVANSWNTDWGDNGFFKILRGQD 238
Query: 294 ECGIESSITAGVP 306
            CGIES I AG+P
Sbjct: 239 HCGIESEIVAGMP 251

>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317

Iteration: 1
 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/196 (49%), Positives = 123/196 (62%), Gaps = 40/196 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D ++G  SYSVS++E
Sbjct: 162 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE 220
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAF+V+ D +LYKSG +                             
Sbjct: 221 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 251
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    + +G+ +GGHAIRILGWG +  +   YWL+ANSWNTDWGDNG FKILRG+D
Sbjct: 252 --------QHVTGEMMGGHAIRILGWGVENGT--PYWLVANSWNTDWGDNGFFKILRGQD 301
Query: 294 ECGIESSITAGVPKLD 309
            CGIES + AG+P+ D
Sbjct: 302 HCGIESEVVAGIPRTD 317

>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254

Iteration: 1
 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/196 (49%), Positives = 123/196 (62%), Gaps = 40/196 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D ++G  SYSVS++E
Sbjct: 99  GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE 157
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAF+V+ D +LYKSG +                             
Sbjct: 158 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 188
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    + +G+ +GGHAIRILGWG +  +   YWL+ANSWNTDWGDNG FKILRG+D
Sbjct: 189 --------QHVTGEMMGGHAIRILGWGVENGT--PYWLVANSWNTDWGDNGFFKILRGQD 238
Query: 294 ECGIESSITAGVPKLD 309
            CGIES + AG+P+ D
Sbjct: 239 HCGIESEVVAGIPRTD 254

>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205

Iteration: 1
 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/196 (49%), Positives = 123/196 (62%), Gaps = 40/196 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D ++G  SYSVS++E
Sbjct: 50  GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE 108
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAF+V+ D +LYKSG +                             
Sbjct: 109 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 139
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    + +G+ +GGHAIRILGWG +  +   YWL+ANSWNTDWGDNG FKILRG+D
Sbjct: 140 --------QHVTGEMMGGHAIRILGWGVENGT--PYWLVANSWNTDWGDNGFFKILRGQD 189
Query: 294 ECGIESSITAGVPKLD 309
            CGIES + AG+P+ D
Sbjct: 190 HCGIESEVVAGIPRTD 205

>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256

Iteration: 1
 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/196 (49%), Positives = 123/196 (62%), Gaps = 40/196 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D ++G  SYSVS++E
Sbjct: 101 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE 159
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAF+V+ D +LYKSG +                             
Sbjct: 160 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 190
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    + +G+ +GGHAIRILGWG +  +   YWL+ANSWNTDWGDNG FKILRG+D
Sbjct: 191 --------QHVTGEMMGGHAIRILGWGVENGT--PYWLVANSWNTDWGDNGFFKILRGQD 240
Query: 294 ECGIESSITAGVPKLD 309
            CGIES + AG+P+ D
Sbjct: 241 HCGIESEVVAGIPRTD 256

>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261

Iteration: 1
 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/196 (49%), Positives = 123/196 (62%), Gaps = 40/196 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D ++G  SYSVS++E
Sbjct: 100 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE 158
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAF+V+ D +LYKSG +                             
Sbjct: 159 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 189
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    + +G+ +GGHAIRILGWG +  +   YWL+ANSWNTDWGDNG FKILRG+D
Sbjct: 190 --------QHVTGEMMGGHAIRILGWGVENGT--PYWLVANSWNTDWGDNGFFKILRGQD 239
Query: 294 ECGIESSITAGVPKLD 309
            CGIES + AG+P+ D
Sbjct: 240 HCGIESEVVAGIPRTD 255

>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256

Iteration: 1
 Score =  191 bits (486), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 98/193 (50%), Positives = 120/193 (62%), Gaps = 40/193 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D +FG  SYSV++NE
Sbjct: 99  GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNE 157
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAF+V+ D +LYKSG +                             
Sbjct: 158 KEIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 188
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    + SG+ +GGHAIRILGWG +  +   YWL+ NSWNTDWGDNG FKILRG+D
Sbjct: 189 --------QHVSGEIMGGHAIRILGWGVENGT--PYWLVGNSWNTDWGDNGFFKILRGQD 238
Query: 294 ECGIESSITAGVP 306
            CGIES I AG+P
Sbjct: 239 HCGIESEIVAGMP 251

>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205

Iteration: 1
 Score =  191 bits (486), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 98/193 (50%), Positives = 120/193 (62%), Gaps = 40/193 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D +FG  SYSV++NE
Sbjct: 51  GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCNKTCEPGYSPSYKEDKHFGCSSYSVANNE 109
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAF+V+ D +LYKSG +                             
Sbjct: 110 KEIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 140
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    + SG+ +GGHAIRILGWG +  +   YWL+ NSWNTDWGDNG FKILRG+D
Sbjct: 141 --------QHVSGEIMGGHAIRILGWGVENGT--PYWLVGNSWNTDWGDNGFFKILRGQD 190
Query: 294 ECGIESSITAGVP 306
            CGIES I AG+P
Sbjct: 191 HCGIESEIVAGMP 203

>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266

Iteration: 1
 Score =  188 bits (478), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/196 (48%), Positives = 121/196 (61%), Gaps = 40/196 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GCRPY I PCE HVNG RP C   +G TPKC + C+  Y   YK+D ++G  SYSVS++E
Sbjct: 105 GCRPYSIPPCEAHVNGARPPC-TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE 163
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAF+V+ D +LYKSG +                             
Sbjct: 164 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 194
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    + +G+ +GGHAIRILGWG +  +   YWL+ANSWNTDWGDNG FKILRG+D
Sbjct: 195 --------QHVTGEMMGGHAIRILGWGVENGT--PYWLVANSWNTDWGDNGFFKILRGQD 244
Query: 294 ECGIESSITAGVPKLD 309
            CGIES + AG+P+ D
Sbjct: 245 HCGIESEVVAGIPRTD 260

>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322

Iteration: 1
 Score =  184 bits (467), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 95/194 (48%), Positives = 117/194 (60%), Gaps = 40/194 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GC PY I PCEHHVNG RP C   +G TPKC + C+  Y   YK+D ++G  SYSVS +E
Sbjct: 161 GCLPYTIPPCEHHVNGARPPC-TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSE 219
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAFTVF D + YKSG +                             
Sbjct: 220 KEIMAEIYKNGPVEGAFTVFSDFLTYKSGVY----------------------------- 250
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    +++G  +GGHAIRILGWG +  +   YWL+ANSWN DWGDNG FKILRG++
Sbjct: 251 --------KHEAGDVMGGHAIRILGWGIE--NGVPYWLVANSWNADWGDNGFFKILRGEN 300
Query: 294 ECGIESSITAGVPK 307
            CGIES I AG+P+
Sbjct: 301 HCGIESEIVAGIPR 314

>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260

Iteration: 1
 Score =  184 bits (467), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 95/194 (48%), Positives = 117/194 (60%), Gaps = 40/194 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GC PY I PCEHHVNG RP C   +G TPKC + C+  Y   YK+D ++G  SYSVS +E
Sbjct: 105 GCLPYTIPPCEHHVNGARPPC-TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSE 163
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAFTVF D + YKSG +                             
Sbjct: 164 KEIMAEIYKNGPVEGAFTVFSDFLTYKSGVY----------------------------- 194
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    +++G  +GGHAIRILGWG +  +   YWL+ANSWN DWGDNG FKILRG++
Sbjct: 195 --------KHEAGDVMGGHAIRILGWGIE--NGVPYWLVANSWNADWGDNGFFKILRGEN 244
Query: 294 ECGIESSITAGVPK 307
            CGIES I AG+P+
Sbjct: 245 HCGIESEIVAGIPR 258

>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254

Iteration: 1
 Score =  184 bits (466), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 95/194 (48%), Positives = 117/194 (60%), Gaps = 40/194 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GC PY I PCEHHVNG RP C   +G TPKC + C+  Y   YK+D ++G  SYSVS +E
Sbjct: 99  GCLPYTIPPCEHHVNGARPPC-TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSE 157
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K IM EIY++GPVEGAFTVF D + YKSG +                             
Sbjct: 158 KEIMAEIYKNGPVEGAFTVFSDFLTYKSGVY----------------------------- 188
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                    +++G  +GGHAIRILGWG +  +   YWL+ANSWN DWGDNG FKILRG++
Sbjct: 189 --------KHEAGDVMGGHAIRILGWGIE--NGVPYWLVANSWNADWGDNGFFKILRGEN 238
Query: 294 ECGIESSITAGVPK 307
            CGIES I AG+P+
Sbjct: 239 HCGIESEIVAGIPR 252

>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254

Iteration: 1
 Score =  150 bits (379), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 81/198 (40%), Positives = 105/198 (53%), Gaps = 53/198 (26%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
           GC PY    CEHH  G  P C +    TP+C + CQ+ Y  PY +D + G  SY+V ++E
Sbjct: 100 GCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDE 159
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           K+I KEI ++GPVE                                              
Sbjct: 160 KAIQKEIMKYGPVEAG-------------------------------------------- 175
Query: 234 FTVFDDLILYKSG-------KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLF 286
           FTV++D + YKSG       + LGGHAIRI+GWG + K+   YWLIANSWN DWG+NG F
Sbjct: 176 FTVYEDFLNYKSGIYKHITGETLGGHAIRIIGWGVENKAP--YWLIANSWNEDWGENGYF 233
Query: 287 KILRGKDECGIESSITAG 304
           +I+RG+DEC IES +TAG
Sbjct: 234 RIVRGRDECSIESEVTAG 251

>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325

Iteration: 1
 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 119/322 (36%), Gaps = 104/322 (32%)
Query: 46  LSNIPRAHLKSWMGVHPDYN----LPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIR 101
           + NI     K   GV    N    LP  R  E     E    LP++FDS   WPNCPTI 
Sbjct: 34  MQNITLREAKRLNGVIKKNNNASILPKRRFTE----EEARAPLPSSFDSAEAWPNCPTIP 89
Query: 102 EIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVREC------------- 148
           +I DQ +CGSCW               G       S G    C  +C             
Sbjct: 90  QIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGGDPDRAW 149
Query: 149 -----------------------------------QENYDVP---YKKD------LNFGA 164
                                              Q N+D P   Y  D      +N+ +
Sbjct: 150 AYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRS 209
Query: 165 KSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDN 224
            +      E   M+E++  GP E AF V++D I Y SG +                    
Sbjct: 210 WTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYH------------------- 250
Query: 225 TSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
                             + SG+ LGGHA+R++GWG    +   YW IANSWNT+WG +G
Sbjct: 251 ------------------HVSGQYLGGHAVRLVGWG--TSNGVPYWKIANSWNTEWGMDG 290
Query: 285 LFKILRGKDECGIESSITAGVP 306
            F I RG  ECGIE   +AG+P
Sbjct: 291 YFLIRRGSSECGIEDGGSAGIP 312

>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340

Iteration: 1
 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 112/298 (37%), Gaps = 100/298 (33%)
Query: 66  LPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEH 125
           LP  R  E     E    LP++FDS   WPNCPTI +I DQ +CGSCW            
Sbjct: 80  LPKRRFTE----EEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRF 135
Query: 126 HVNGTRPSCDASKGHTPKCVREC------------------------------------- 148
              G       S G    C  +C                                     
Sbjct: 136 CTMGGVQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHH 195
Query: 149 -----------QENYDVP---YKKD------LNFGAKSYSVSSNEKSIMKEIYEHGPVEG 188
                      Q N+D P   Y  D      +N+ + +      E   M+E++  GP E 
Sbjct: 196 SKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEV 255
Query: 189 AFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKA 248
           AF V++D I Y SG +                                      + SG+ 
Sbjct: 256 AFDVYEDFIAYNSGVYH-------------------------------------HVSGQY 278
Query: 249 LGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGVP 306
           LGGHA+R++GWG    +   YW IANSWNT+WG +G F I RG  ECGIE   +AG+P
Sbjct: 279 LGGHAVRLVGWG--TSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAGIP 334

>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317

Iteration: 1
 Score =  114 bits (285), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 119/322 (36%), Gaps = 104/322 (32%)
Query: 46  LSNIPRAHLKSWMGVHPDYN----LPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIR 101
           + NI     K   GV    N    LP  R  E     E    LP++FDS   WPNCPTI 
Sbjct: 33  MQNITLREAKRLNGVIKKNNNASILPKRRFTE----EEARAPLPSSFDSAEAWPNCPTIP 88
Query: 102 EIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVREC------------- 148
           +I DQ +CGSCW               G       S G    C  +C             
Sbjct: 89  QIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGGDPDRAW 148
Query: 149 -----------------------------------QENYDVP---YKKD------LNFGA 164
                                              Q N+D P   Y  D      +N+ +
Sbjct: 149 AYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRS 208
Query: 165 KSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDN 224
            +      E   M+E++  GP E AF V++D I Y SG +                    
Sbjct: 209 WTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYH------------------- 249
Query: 225 TSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
                             + SG+ LGGHA+R++GWG    +   YW IANSWNT+WG +G
Sbjct: 250 ------------------HVSGQYLGGHAVRLVGWG--TSNGVPYWKIANSWNTEWGMDG 289
Query: 285 LFKILRGKDECGIESSITAGVP 306
            F I RG  ECGIE   +AG+P
Sbjct: 290 YFLIRRGSSECGIEDGGSAGIP 311

>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 98/253 (38%), Gaps = 77/253 (30%)
Query: 100 IREIRDQGSCGSCWG----------------------CRPYEIAPCEHHVNG-------- 129
           +  +R+Q SCGSC+                         P E+  C  +  G        
Sbjct: 222 VSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYL 281
Query: 130 -----------TRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMK 178
                         +C    G    C  + +E+    Y  + ++    Y    NE  +  
Sbjct: 282 IAGKYAQDFGLVEEACFPYTGTDSPC--KMKEDCFRYYSSEYHYVGGFYG-GCNEALMKL 338
Query: 179 EIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFD 238
           E+  HGP+  AF V+DD + YK G +   G            +RD          F  F+
Sbjct: 339 ELVHHGPMAVAFEVYDDFLHYKKGIYHHTG------------LRD---------PFNPFE 377
Query: 239 DLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIE 298
                     L  HA+ ++G+G D  S   YW++ NSW T WG+NG F+I RG DEC IE
Sbjct: 378 ----------LTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIE 427
Query: 299 SSITAG--VPKLD 309
           S   A   +PKL+
Sbjct: 428 SIAVAATPIPKLE 440

>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 31/135 (22%)
Query: 172 NEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAE 231
           NE  +  E+ +HGP+  AF V DD + Y SG +                        G  
Sbjct: 331 NEALMKLELVKHGPMAVAFEVHDDFLHYHSGIY---------------------HHTGLS 369
Query: 232 GAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRG 291
             F  F+          L  HA+ ++G+G+D  +   YW++ NSW + WG++G F+I RG
Sbjct: 370 DPFNPFE----------LTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRG 419
Query: 292 KDECGIESSITAGVP 306
            DEC IES   A +P
Sbjct: 420 TDECAIESIAMAAIP 434

>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 69

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 37/58 (63%)
Query: 249 LGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGVP 306
           L  HA+ ++G+G D  S   YW++ NSW T WG+NG F+I RG DEC IES   A  P
Sbjct: 8   LTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATP 65

>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 47

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 28/31 (90%)
Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCWG 114
           LPA+FD+R +WP CPTI+EIRDQGSCGSCW 
Sbjct: 1   LPASFDAREQWPQCPTIKEIRDQGSCGSCWA 31

>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 48

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 28/31 (90%)
Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCWG 114
           LP +FD+R +WPNCPTI+EIRDQGSCGSCW 
Sbjct: 1   LPESFDAREQWPNCPTIKEIRDQGSCGSCWA 31

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 96/250 (38%), Gaps = 50/250 (20%)
Query: 71  LPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGT 130
           L   + Y   +  +P   D    W     + E++DQG+CGS W          ++  N  
Sbjct: 79  LSHGVPYEANNRAVPDKID----WRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKN-E 133
Query: 131 RPSCDASKGHTPKCVRECQEN------YDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHG 184
           R S   S+     C R    N       +  Y+    FG ++ S            Y + 
Sbjct: 134 RTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQFGLETESS-----------YPYT 182
Query: 185 PVEGAFTVFDDLILYKSGRFFV--PGNETTAMSLIKWTIRDNTSQLGAEG----AFTVFD 238
            VEG       L + K   F+    G+E    +L+           GAEG    A  V  
Sbjct: 183 AVEGQCRYNKQLGVAKVTGFYTVHSGSEVELKNLV-----------GAEGPAAVAVDVES 231
Query: 239 DLILYKSGKALG--------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILR 290
           D ++Y+SG             HA+  +G+G   +    YW++ NSW   WG+ G  +++R
Sbjct: 232 DFMMYRSGIYQSQTCSPLRVNHAVLAVGYGT--QGGTDYWIVKNSWGLSWGERGYIRMVR 289
Query: 291 GK-DECGIES 299
            + + CGI S
Sbjct: 290 NRGNMCGIAS 299

>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 233 AFTVFDDLILYKSGKALG----------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGD 282
           AF V +D ++Y+ G               HA+  +G+GE+      YW++ NSW   WG 
Sbjct: 137 AFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIP--YWIVKNSWGPQWGM 194
Query: 283 NGLFKILRGKDECGIESSITAGVP 306
           NG F I RGK+ CG+ +  +  +P
Sbjct: 195 NGYFLIERGKNMCGLAACASYPIP 218

>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 91/260 (35%), Gaps = 81/260 (31%)
Query: 85  PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRP---------------YEIAPCEHHVNG 129
           PA+FD    W +   +  +++QGSCGS W                   Y+ +  E  +  
Sbjct: 117 PASFD----WRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVD 172
Query: 130 TRPSC---------DA-----------SKGHTPKCVRECQENYDVPYKKDLNFGAKSYSV 169
             P+          DA           S+G  P  + +   +YD P +         Y  
Sbjct: 173 CVPNALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADGNCHYD-PNQVAARLSGYVYLS 231
Query: 170 SSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLG 229
             +E  +   +   GPV  AF   D    Y  G ++ P  ET   +              
Sbjct: 232 GPDENMLADMVATKGPVAVAFDADDPFGSYSGGVYYNPTCETNKFT-------------- 277
Query: 230 AEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKIL 289
                                 HA+ I+G+G +  + + YWL+ NSW   WG +G FKI 
Sbjct: 278 ----------------------HAVLIVGYGNE--NGQDYWLVKNSWGDGWGLDGYFKIA 313
Query: 290 R-GKDECGIESSITAGVPKL 308
           R   + CGI     A VP L
Sbjct: 314 RNANNHCGIAG--VASVPTL 331

>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 21/227 (9%)
Query: 85  PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKC 144
           PA  D R +      +  ++DQG CGSCW         C+  + G  P  + S+     C
Sbjct: 2   PAAVDWRAR----GAVTAVKDQGQCGSCWAFSAIGNVECQWFLAG-HPLTNLSEQMLVSC 56
Query: 145 VRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKE-IYEHGPVEG----AFTVFDDLILY 199
                +  D      L   A  + V  N  ++  E  Y +   EG      T    +   
Sbjct: 57  -----DKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGAT 111
Query: 200 KSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA-FTVFDDLILYKSGKALGGHAIRILG 258
            +G   +P +E     +  W   +    +  + + +  +   ++         H + ++G
Sbjct: 112 ITGHVELPQDEA---QIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEALDHGVLLVG 168
Query: 259 WGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGV 305
           +  ++ +   YW+I NSW T WG+ G  +I +G ++C ++   ++ V
Sbjct: 169 Y--NDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213

>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 21/227 (9%)
Query: 85  PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKC 144
           PA  D R +      +  ++DQG CGSCW         C+  + G  P  + S+     C
Sbjct: 2   PAAVDWRAR----GAVTAVKDQGQCGSCWAFSAIGNVECQWFLAG-HPLTNLSEQMLVSC 56
Query: 145 VRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKE-IYEHGPVEG----AFTVFDDLILY 199
                +  D      L   A  + V  N  ++  E  Y +   EG      T    +   
Sbjct: 57  -----DKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGAT 111
Query: 200 KSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA-FTVFDDLILYKSGKALGGHAIRILG 258
            +G   +P +E     +  W   +    +  + + +  +   ++         H + ++G
Sbjct: 112 ITGHVELPQDEA---QIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVG 168
Query: 259 WGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGV 305
           +  ++ +   YW+I NSW T WG+ G  +I +G ++C ++   ++ V
Sbjct: 169 Y--NDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213

>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 90/227 (39%), Gaps = 21/227 (9%)
Query: 85  PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKC 144
           PA  D R +      +  ++DQG CGSCW         C+  + G  P  + ++     C
Sbjct: 2   PAAVDWRAR----GAVTAVKDQGQCGSCWAFSAIGNVECQWFLAG-HPLTNLAEQMLVSC 56
Query: 145 VRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKE-IYEHGPVEG----AFTVFDDLILY 199
                +  D      L   A  + V  N  ++  E  Y +   EG      T    +   
Sbjct: 57  -----DKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGAT 111
Query: 200 KSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA-FTVFDDLILYKSGKALGGHAIRILG 258
            +G   +P +E     +  W   +    +  + + +  +   ++         H + ++G
Sbjct: 112 ITGHVELPQDEA---QIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVG 168
Query: 259 WGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGV 305
           +  ++ +   YW+I NSW T WG+ G  +I +G ++C ++   ++ V
Sbjct: 169 Y--NDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213

>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 90/227 (39%), Gaps = 21/227 (9%)
Query: 85  PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKC 144
           PA  D R +      +  ++DQG CGSCW         C+  + G  P  + ++     C
Sbjct: 2   PAAVDWRAR----GAVTAVKDQGQCGSCWAFSAIGNVECQWFLAG-HPLTNLAEQMLVSC 56
Query: 145 VRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKE-IYEHGPVEG----AFTVFDDLILY 199
                +  D      L   A  + V  N  ++  E  Y +   EG      T    +   
Sbjct: 57  -----DKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGAT 111
Query: 200 KSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA-FTVFDDLILYKSGKALGGHAIRILG 258
            +G   +P +E     +  W   +    +  + + +  +   ++         H + ++G
Sbjct: 112 ITGHVELPQDEA---QIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVG 168
Query: 259 WGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGV 305
           +  ++ +   YW+I NSW T WG+ G  +I +G ++C ++   ++ V
Sbjct: 169 Y--NDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213

>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 95/252 (37%), Gaps = 72/252 (28%)
Query: 85  PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVN-GTRPS--------CD 135
           P  +D R+K      + +++DQG CGSCW          +  +N GT  S        CD
Sbjct: 2   PPEWDWRSK----GAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD 57
Query: 136 ----ASKGHTPKCVRECQENY-------DVPYK---KDLNFGAK--------SYSVSSNE 173
               A  G  P       +N        D  Y+   +   F A+        S  +S NE
Sbjct: 58  KMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELSQNE 117
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
           + +   + + GP+  A   F  +  Y+ G              I   +R   S       
Sbjct: 118 QKLAAWLAKRGPISVAINAFG-MQFYRHG--------------ISRPLRPLCSPW----- 157
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
                          L  HA+ ++G+G+  +S   +W I NSW TDWG+ G + + RG  
Sbjct: 158 ---------------LIDHAVLLVGYGQ--RSDVPFWAIKNSWGTDWGEKGYYYLHRGSG 200
Query: 294 ECGIESSITAGV 305
            CG+ +  ++ V
Sbjct: 201 ACGVNTMASSAV 212

>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1 Length = 223

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 30/226 (13%)
Query: 83  DLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTR-PSCDASKGHT 141
           ++P+  D R+      T+  IR QG CGSCW      +A  E      R  S D S+   
Sbjct: 10  NVPSELDLRS----LRTVTPIRMQGGCGSCWAFSG--VAATESAYLAYRNTSLDLSEQEL 63
Query: 142 PKCVRE--CQENYDVP-----YKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFD 194
             C  +  C  +  +P      +++     +SY   + E+   +   +H  +     ++ 
Sbjct: 64  VDCASQHGCHGD-TIPRGIEYIQQNGVVEERSYPYVAREQRCRRPNSQHYGISNYCQIYP 122
Query: 195 DLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFD--DLILYKSGKALGGH 252
             +  K  R  +    T    +I   I+D         AF  +D   +I + +G     H
Sbjct: 123 PDV--KQIREALTQTHTAIAVIIG--IKDLR-------AFQHYDGRTIIQHDNGYQPNYH 171
Query: 253 AIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIE 298
           A+ I+G+G  +   + YW++ NSW+T WGD+G      G +   IE
Sbjct: 172 AVNIVGYGSTQG--DDYWIVRNSWDTTWGDSGYGYFQAGNNLMMIE 215

>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 31/232 (13%)
Query: 85  PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGT---------RPSCD 135
           PA  D R K    P    ++DQG CGSCW          +  V G            SCD
Sbjct: 2   PAAVDWREKGAVTP----VKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCD 57
Query: 136 ASKGHTPKCVRECQENYDVPYKKDLNFGAKSYS-VSSNEKSIMKEIYEHGPVEGAFTVFD 194
                    + +   N+ V       F   SY  VS N +    ++  H  +  A T   
Sbjct: 58  TIDFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGH-EIGAAITDHV 116
Query: 195 DLILYKSG-RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHA 253
           DL   +     ++  N   A+++      D TS       F  ++  IL         H 
Sbjct: 117 DLPQDEDAIAAYLAENGPLAIAV------DATS-------FMDYNGGILTSCTSEQLDHG 163
Query: 254 IRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGV 305
           + ++G+  ++ S   YW+I NSW+  WG++G  +I +G ++C +  ++++ V
Sbjct: 164 VLLVGY--NDASNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAV 213

>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 206 VPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYK---SGKALGGHAIRILGWGED 262
            PG E   M  +      + +      +F  +   I ++   S K L  H + ++G+G +
Sbjct: 116 APGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLD-HGVLVVGYGFE 174
Query: 263 EKSKE--KYWLIANSWNTDWGDNGLFKILRGK-DECGIESSIT 302
             + +  KYWL+ NSW  +WG NG  KI + K + CGI ++ +
Sbjct: 175 GANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAAS 217

>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 206 VPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYK---SGKALGGHAIRILGWGED 262
            PG E   M  +      + +      +F  +   I ++   S K L  H + ++G+G +
Sbjct: 116 APGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLD-HGVLVVGYGFE 174
Query: 263 EKSKE--KYWLIANSWNTDWGDNGLFKILRGK-DECGIESSIT 302
             + +  KYWL+ NSW  +WG NG  KI + K + CGI ++ +
Sbjct: 175 GANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAAS 217

>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 16/211 (7%)
Query: 83  DLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTP 142
           DLP + D R K      +  ++DQG CGSCW    +        +N  R     S   + 
Sbjct: 3   DLPPSVDWRQKG----AVTGVKDQGKCGSCWA---FSTVVSVEGINAIRTGSLVS--LSE 53
Query: 143 KCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVF-----DDLI 197
           + + +C    +   +  L   A  Y + +N   I +  Y +    G   V        ++
Sbjct: 54  QELIDCDTADNDGCQGGLMDNAFEY-IKNNGGLITEAAYPYRAARGTCNVARAAQNSPVV 112
Query: 198 LYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRIL 257
           ++  G   VP N    ++        + +   +  AF  + + +          H + ++
Sbjct: 113 VHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVV 172
Query: 258 GWGEDEKSKEKYWLIANSWNTDWGDNGLFKI 288
           G+G  E  K  YW + NSW   WG+ G  ++
Sbjct: 173 GYGVAEDGK-AYWTVKNSWGPSWGEQGYIRV 202

>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
           +   EK++MK +   GP+  A     +  + YK G +F P   +  M             
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 162
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
                                   H + ++G+G    E    KYWL+ NSW  +WG  G 
Sbjct: 163 ------------------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 198
Query: 286 FKILRG-KDECGIESSIT 302
            K+ +  ++ CGI S+ +
Sbjct: 199 VKMAKDRRNHCGIASAAS 216

>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
           +   EK++MK +   GP+  A     +  + YK G +F P   +  M             
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 162
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
                                   H + ++G+G    E    KYWL+ NSW  +WG  G 
Sbjct: 163 ------------------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 198
Query: 286 FKILRG-KDECGIESSIT 302
            K+ +  ++ CGI S+ +
Sbjct: 199 VKMAKDRRNHCGIASAAS 216

>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
           +   EK++MK +   GP+  A     +  + YK G +F P   +  M             
Sbjct: 116 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 163
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
                                   H + ++G+G    E    KYWL+ NSW  +WG  G 
Sbjct: 164 ------------------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 199
Query: 286 FKILRG-KDECGIESSIT 302
            K+ +  ++ CGI S+ +
Sbjct: 200 VKMAKDRRNHCGIASAAS 217

>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
           +   EK++MK +   GP+  A     +  + YK G +F P   +  M             
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 162
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
                                   H + ++G+G    E    KYWL+ NSW  +WG  G 
Sbjct: 163 ------------------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 198
Query: 286 FKILRG-KDECGIESSIT 302
            K+ +  ++ CGI S+ +
Sbjct: 199 VKMAKDRRNHCGIASAAS 216

>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
           +   EK++MK +   GP+  A     +  + YK G +F P   +  M             
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 162
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
                                   H + ++G+G    E    KYWL+ NSW  +WG  G 
Sbjct: 163 ------------------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 198
Query: 286 FKILRG-KDECGIESSIT 302
            K+ +  ++ CGI S+ +
Sbjct: 199 VKMAKDRRNHCGIASAAS 216

>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
           +   EK++MK +   GP+  A     +  + YK G +F P   +  M             
Sbjct: 153 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 200
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
                                   H + ++G+G    E    KYWL+ NSW  +WG  G 
Sbjct: 201 ------------------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 236
Query: 286 FKILRG-KDECGIESSIT 302
            K+ +  ++ CGI S+ +
Sbjct: 237 VKMAKDRRNHCGIASAAS 254

>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
           +   EK++MK +   GP+  A     +  + YK G +F P   +  M             
Sbjct: 116 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 163
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
                                   H + ++G+G    E    KYWL+ NSW  +WG  G 
Sbjct: 164 ------------------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 199
Query: 286 FKILRG-KDECGIESSIT 302
            K+ +  ++ CGI S+ +
Sbjct: 200 VKMAKDRRNHCGIASAAS 217

>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
           +   EK++MK +   GP+  A     +  + YK G +F P   +  M             
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 162
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
                                   H + ++G+G    E    KYWL+ NSW  +WG  G 
Sbjct: 163 ------------------------HGVLVVGYGFESTESDDNKYWLVKNSWGEEWGMGGY 198
Query: 286 FKILRG-KDECGIESSIT 302
            K+ +  ++ CGI S+ +
Sbjct: 199 VKMAKDRRNHCGIASAAS 216

>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 107/270 (39%), Gaps = 63/270 (23%)
Query: 61  HPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEI 120
           HP+ NL   R+P    Y    + L A+ D R+       + E++DQG CGS W       
Sbjct: 101 HPE-NL---RMP----YVSSKKPLAASVDWRSN-----AVSEVKDQGQCGSSWSFSTTGA 147
Query: 121 APCEHHVNGTRPSCDASKGHTPKCVRECQENY----------DVPYKKDLNFGAKSYSVS 170
              +  +   R +       + + + +C  +Y          D  +    ++G       
Sbjct: 148 VEGQLALQRGRLTS-----LSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDYG------- 195
Query: 171 SNEKSIMKEIYEHGPVEGAFTVFD--DLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQL 228
                IM E       +G +  FD    +   SG + +P  +  +++       D   Q 
Sbjct: 196 -----IMSESAYPYEAQGDYCRFDSSQSVTTLSGYYDLPSGDENSLA-------DAVGQA 243
Query: 229 GAEG-AFTVFDDLILYKSG--------KALGGHAIRILGWGEDEKSKEKYWLIANSWNTD 279
           G    A    D+L  Y  G        ++   H + ++G+G D  + + YW++ NSW + 
Sbjct: 244 GPVAVAIDATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSD--NGQDYWILKNSWGSG 301
Query: 280 WGDNGLFKILRGK-DECGIESSITAGVPKL 308
           WG++G ++ +R   + CGI  +  A  P L
Sbjct: 302 WGESGYWRQVRNYGNNCGI--ATAASYPAL 329

>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 89/236 (37%), Gaps = 54/236 (22%)
Query: 90  SRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCE---HHVNGTRPSCDASK----GHTP 142
           S   W +   + +I+ QG CG CW      IA  E     V G   S    +    G T 
Sbjct: 3   SYVDWRSAGAVVDIKSQGECGGCWAFSA--IATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 143 KCVRECQENYDVP-YKKDLNFGA----KSYSVSS----------NEKSIMKEIYEHGPVE 187
              R C   Y    ++  +N G     ++Y  ++          NEK +  + YE+    
Sbjct: 61  N-TRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYEN---- 115
Query: 188 GAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEG-AFTVFDDLILYKSG 246
                             VP N   A+     T +  +  L A G AF  +   I     
Sbjct: 116 ------------------VPYNNEWALQTAV-TYQPVSVALDAAGDAFKQYSSGIFTGPC 156
Query: 247 KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILR---GKDECGIES 299
                HA+ I+G+G +      YW++ NSW+T WG+ G  +ILR   G   CGI +
Sbjct: 157 GTAIDHAVTIVGYGTE--GGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIAT 210

>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILR---GKDECGIES 299
           HAI I+G+G +      YW++ NSW+T WG+ G  +ILR   G   CGI +
Sbjct: 162 HAIVIVGYGTE--GGVDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIAT 210

>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
           +   EK++MK +   GP+  A     +  + YK G +F P   +  M             
Sbjct: 211 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 258
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWGED--EKSKEKYWLIANSWNTDWGDNGL 285
                                   H + ++G+G +  E    KYWL+ NSW  +WG  G 
Sbjct: 259 ------------------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 294
Query: 286 FKILRG-KDECGIESSIT 302
            K+ +  ++ CGI S+ +
Sbjct: 295 VKMAKDRRNHCGIASAAS 312

>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 87/259 (33%), Gaps = 54/259 (20%)
Query: 65  NLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPY------ 118
           ++  N     + Y EV  D   N      W     +  +++QGSCGS W           
Sbjct: 129 SIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESI 188
Query: 119 ---EIAPCEHHVNGTRPSCD----ASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSS 171
                     +       CD       G  P    +    Y + Y+    +        S
Sbjct: 189 IKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRS 248
Query: 172 NEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAE 231
            EK             G +    D +     R   P NE   +    ++I +    +  E
Sbjct: 249 REK-------------GPYAAKTDGV-----RQVQPYNEGALL----YSIANQPVSVVLE 286
Query: 232 GAFTVFDDLILYKSGKALG------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGL 285
            A     D  LY+ G  +G       HA+  +G+G +      Y LI NSW T WG+NG 
Sbjct: 287 AAGK---DFQLYRGGIFVGPCGNKVDHAVAAVGYGPN------YILIRNSWGTGWGENGY 337
Query: 286 FKILRGKDE----CGIESS 300
            +I RG       CG+ +S
Sbjct: 338 IRIKRGTGNSYGVCGLYTS 356

>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex Length = 212

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 84/240 (35%), Gaps = 58/240 (24%)
Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCW---------GCRPYEIAPCEHHVNGTRPSC 134
           +P   D R K    P    +++QGSCGSCW         G           +       C
Sbjct: 1   IPEYVDWRQKGAVTP----VKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDC 56
Query: 135 D----ASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAF 190
           D       G  P    +    Y + Y+    +        S EK             G +
Sbjct: 57  DRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREK-------------GPY 103
Query: 191 TVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALG 250
               D +     R   P NE   +    ++I +    +  E A     D  LY+ G  +G
Sbjct: 104 AAKTDGV-----RQVQPYNEGALL----YSIANQPVSVVLEAAG---KDFQLYRGGIFVG 151
Query: 251 ------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGIESS 300
                  HA+  +G+G +      Y LI NSW T WG+NG  +I RG       CG+ +S
Sbjct: 152 PCGNKVDHAVAAVGYGPN------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTS 205

>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
           +   EK++MK +   GP+  A     +  + YK G +F P   +  M             
Sbjct: 207 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 254
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
                                   H + ++G+G    E    KYWL+ NSW  +WG  G 
Sbjct: 255 ------------------------HGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGY 290
Query: 286 FKILRG-KDECGIESSIT 302
            K+ +  ++ CGI S+ +
Sbjct: 291 VKMAKDRRNHCGIASAAS 308

>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum With Loop 690-700 Ordered Length = 265

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 199 YKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGG-----HA 253
           Y+S RF    N    + +IK  + +  S +    A  V       K  K L G     HA
Sbjct: 144 YESERFH--DNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADHA 201
Query: 254 IRILGWGE---DEKSKEKYWLIANSWNTDWGDNGLFKI-LRGKDEC 295
           + I+G+G     E  K+ YW++ NSW   WGD G FK+ + G   C
Sbjct: 202 VNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHC 247

>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 224

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE---CGI 297
           H + ++G+G D++SK+ +W++ NSW T WG +G   +   K E   CG+
Sbjct: 167 HGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGL 215

>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 75/210 (35%), Gaps = 14/210 (6%)
Query: 94  WPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYD 153
           W +   + +I+DQG CGSCW           + +  T      S+     C R       
Sbjct: 7   WRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKI-ATGDLISLSEQELVDCGRTQNTR-- 63
Query: 154 VPYKKDLNFGAKSYSVSSNEKSIMKEI-YEHGPVEGAFTVFDDLILYKSGRFF--VPGNE 210
                D  F    +    N   I  E  Y +   EG   +      Y S   +  VP N 
Sbjct: 64  ---GCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 211 TTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYW 270
             A+         + +   A   F  +   I          HA+ I+G+G +      YW
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTE--GGIDYW 178
Query: 271 LIANSWNTDWGDNGLFKILR---GKDECGI 297
           ++ NSW T WG+ G  +I R   G  +CGI
Sbjct: 179 IVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208

>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE-CGIESSITAGVPKL 308
           HA+  +G+GE + +K  +W+I NSW  +WG  G  K+ R K+  CGI +   A  PK+
Sbjct: 162 HAVLAVGYGESKGNK--HWIIKNSWGENWGMGGYIKMARNKNNACGIAN--LASFPKM 215

>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 43/157 (27%)
Query: 148 CQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFV 206
           C+ N       D+ F      +   EK++MK +   GP+  A     +  + YK G +F 
Sbjct: 98  CKYNPKYSVANDVGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFS 153
Query: 207 PGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSK 266
               +++++                                    HA+ ++G+G    + 
Sbjct: 154 SDCSSSSLN------------------------------------HAMLVVGYGFI-SNN 176
Query: 267 EKYWLIANSWNTDWGDNGLFKILRG-KDECGIESSIT 302
           +KYWL+ NSW  +WG  G  K+ +  ++ CGI S+ +
Sbjct: 177 QKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 213

>pdb|1PIP|A Chain A, Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide Complex At 1.7 Angstroms Resolution: Noncovalent Binding Mode Of A Common Sequence Of Endogenous Thiol Protease Inhibitors Length = 212

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 84/240 (35%), Gaps = 58/240 (24%)
Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCW---------GCRPYEIAPCEHHVNGTRPSC 134
           +P   D R K    P    +++QGSCGSCW         G           +       C
Sbjct: 1   IPEYVDWRQKGAVTP----VKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDC 56
Query: 135 D----ASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAF 190
           D       G  P    +    Y + Y+    +        S EK             G +
Sbjct: 57  DRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREK-------------GPY 103
Query: 191 TVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALG 250
               D +     R   P N+   +    ++I +    +  + A     D  LY+ G  +G
Sbjct: 104 AAKTDGV-----RQVQPYNQGALL----YSIANQPVSVVLQAAG---KDFQLYRGGIFVG 151
Query: 251 ------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGIESS 300
                  HA+  +G+G +      Y LI NSW T WG+NG  +I RG       CG+ +S
Sbjct: 152 PCGNKVDHAVAAVGYGPN------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTS 205

>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 85/225 (37%), Gaps = 27/225 (12%)
Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPK 143
           +PA+ D R K      +  ++DQG CGSCW           + +  T      S+     
Sbjct: 2   VPASVDWRKK----GAVTSVKDQGQCGSCWAFSTIVAVEGINQIK-TNKLVSLSEQELVD 56
Query: 144 CVRECQENYDVPYKKDLNFGAKSYSVS--SNEKSIMKEI-YEHGPVEGAFTVFDDLILYK 200
           C        D    +  N G   Y+         I  E  Y +   +G   V  +     
Sbjct: 57  C--------DTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAV 108
Query: 201 S--GRFFVPGNETTAMSLIKWTIRDNTS-QLGAEGA-FTVFDDLILYKSGKALGGHAIRI 256
           S  G   VP N+  A  L+K       S  + A G+ F  + + +   S      H + I
Sbjct: 109 SIDGHENVPENDENA--LLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAI 166
Query: 257 LGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGI 297
           +G+G       KYW + NSW  +WG+ G  ++ RG  +    CGI
Sbjct: 167 VGYGTTIDGT-KYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGI 210

>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum Length = 265

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 199 YKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGG-----HA 253
           Y+S RF    N    + +IK  + +  S +    A  V       K  + L G     HA
Sbjct: 143 YESERFH--DNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDTADHA 200
Query: 254 IRILGWGE---DEKSKEKYWLIANSWNTDWGDNGLFKI-LRGKDEC 295
           + I+G+G     E  K+ YW++ NSW   WGD G FK+ + G   C
Sbjct: 201 VNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHC 246

>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding Diversity Of E64-C To Papain S2 And S3 Subsites Length = 212

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 80/230 (34%), Gaps = 54/230 (23%)
Query: 94  WPNCPTIREIRDQGSCGSCW---------GCRPYEIAPCEHHVNGTRPSCD----ASKGH 140
           W     +  +++QGSCGSCW         G           +       CD       G 
Sbjct: 7   WRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGG 66
Query: 141 TPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYK 200
            P    +    Y + Y+    +        S EK             G +    D +   
Sbjct: 67  YPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREK-------------GPYAAKTDGV--- 110
Query: 201 SGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALG------GHAI 254
             R   P N+   +    ++I +    +  + A     D  LY+ G  +G       HA+
Sbjct: 111 --RQVQPYNQGALL----YSIANQPVSVVLQAAG---KDFQLYRGGIFVGPCGNKVDHAV 161
Query: 255 RILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGIESS 300
             +G+G +      Y LI NSW T WG+NG  +I RG       CG+ +S
Sbjct: 162 AAVGYGPN------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTS 205

>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1 Allergen Length = 222

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 20/210 (9%)
Query: 80  VDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEH-HVNGTRPSCDASK 138
           ++ + PA  D R       T+  IR QG CGSCW      +A  E  ++   + S D ++
Sbjct: 6   INGNAPAEIDLRQM----RTVTPIRMQGGCGSCWAFSG--VAATESAYLAYRQQSLDLAE 59
Query: 139 GHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLIL 198
                C  +   + D   +             S  + + +E     P    F + +   +
Sbjct: 60  QELVDCASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQI 119
Query: 199 YKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEG--AFTVFD--DLILYKSGKALGGHAI 254
           Y       P N       +  T       +G +   AF  +D   +I   +G     HA+
Sbjct: 120 Y-------PPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAV 172
Query: 255 RILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
            I+G+   +     YW++ NSW+T+WGDNG
Sbjct: 173 NIVGYSNAQGVD--YWIVRNSWDTNWGDNG 200

>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X Length = 242

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/215 (20%), Positives = 79/215 (36%), Gaps = 56/215 (26%)
Query: 87  NFDSRTKWPNCP-TIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKC- 144
           N   +  WP+   +++ + D G+ GSC G     +    H       +C+  +    +C 
Sbjct: 45  NIKRKGAWPSTLLSVQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECD 104
Query: 145 ----------VRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFD 194
                      +EC    +    +  ++G    S+S  EK +M EIY +GP+       +
Sbjct: 105 KFNQCGTCNEFKECHAIRNYTLWRVGDYG----SLSGREK-MMAEIYANGPISCGIMATE 159
Query: 195 DLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAI 254
            L  Y  G  +    +TT ++                                    H +
Sbjct: 160 RLANYTGG-IYAEYQDTTYIN------------------------------------HVV 182
Query: 255 RILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKIL 289
            + GWG  + ++  YW++ NSW   WG+ G  +I+
Sbjct: 183 SVAGWGISDGTE--YWIVRNSWGEPWGERGWLRIV 215

>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/215 (20%), Positives = 79/215 (36%), Gaps = 56/215 (26%)
Query: 87  NFDSRTKWPNCP-TIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKC- 144
           N   +  WP+   +++ + D G+ GSC G     +    H       +C+  +    +C 
Sbjct: 80  NIKRKGAWPSTLLSVQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECD 139
Query: 145 ----------VRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFD 194
                      +EC    +    +  ++G    S+S  EK +M EIY +GP+       +
Sbjct: 140 KFNQCGTCNEFKECHAIRNYTLWRVGDYG----SLSGREK-MMAEIYANGPISCGIMATE 194
Query: 195 DLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAI 254
            L  Y  G  +    +TT ++                                    H +
Sbjct: 195 RLANYTGG-IYAEYQDTTYIN------------------------------------HVV 217
Query: 255 RILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKIL 289
            + GWG  + ++  YW++ NSW   WG+ G  +I+
Sbjct: 218 SVAGWGISDGTE--YWIVRNSWGEPWGERGWLRIV 250

>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1 Length = 222

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 80/210 (38%), Gaps = 20/210 (9%)
Query: 80  VDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTR-PSCDASK 138
           ++ + PA  D R       T+  IR QG CGSCW      +A  E      R  S D ++
Sbjct: 6   INGNAPAEIDLRQM----RTVTPIRMQGGCGSCWAFSG--VAATESAYLAYRNQSLDLAE 59
Query: 139 GHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLIL 198
                C  +   + D   +             S  + + +E     P    F + +   +
Sbjct: 60  QELVDCASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQI 119
Query: 199 YKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEG--AFTVFD--DLILYKSGKALGGHAI 254
           Y       P N       +  T       +G +   AF  +D   +I   +G     HA+
Sbjct: 120 Y-------PPNVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAV 172
Query: 255 RILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
            I+G+   +     YW++ NSW+T+WGDNG
Sbjct: 173 NIVGYSNAQGVD--YWIVRNSWDTNWGDNG 200

>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILR---GKDECGI 297
           HA+ I+G+G +      YW++ NSW T WG+ G  +I R   G  +CGI
Sbjct: 162 HAVTIVGYGTE--GGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208

>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 89/230 (38%), Gaps = 34/230 (14%)
Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPK 143
           LP + D R K      + E++ QGSCG+CW      +   E  +          K  T K
Sbjct: 1   LPDSVDWREK----GCVTEVKYQGSCGACWAFSA--VGALEAQL----------KLKTGK 44
Query: 144 CVRECQENY-DVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSG 202
            V    +N  D   KK  N G     +++  + I+            +   D    Y S 
Sbjct: 45  LVSLSAQNLVDCSTKKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSA 104
Query: 203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDD-----LILYKSGKALG------- 250
                  + T +   +  +      +  +G  +V  D       LY+SG           
Sbjct: 105 YRAATCRKYTELPYGREDVLKEA--VANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV 162
Query: 251 GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DECGIES 299
            H + ++G+G D   KE YWL+ NSW  ++G+ G  ++ R K + CGI S
Sbjct: 163 NHGVLVVGYG-DLNGKE-YWLVKNSWGHNFGEKGYIRMARNKGNHCGIAS 210

>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed With Fragments Of The Trypanosoma Brucei Cysteine Protease Inhibitor Icp Length = 212

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 83/240 (34%), Gaps = 58/240 (24%)
Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCW---------GCRPYEIAPCEHHVNGTRPSC 134
           +P   D R K    P    +++QGSCGS W         G           +       C
Sbjct: 1   IPEYVDWRQKGAVTP----VKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDC 56
Query: 135 D----ASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAF 190
           D       G  P    +    Y + Y+    +        S EK             G +
Sbjct: 57  DRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREK-------------GPY 103
Query: 191 TVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALG 250
               D +     R   P NE   +    ++I +    +  E A     D  LY+ G  +G
Sbjct: 104 AAKTDGV-----RQVQPYNEGALL----YSIANQPVSVVLEAAG---KDFQLYRGGIFVG 151
Query: 251 ------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGIESS 300
                  HA+  +G+G +      Y LI NSW T WG+NG  +I RG       CG+ +S
Sbjct: 152 PCGNKVDHAVAAVGYGPN------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTS 205

>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain Length = 212

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 83/240 (34%), Gaps = 58/240 (24%)
Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCW---------GCRPYEIAPCEHHVNGTRPSC 134
           +P   D R K    P    +++QGSCGS W         G           +       C
Sbjct: 1   IPEYVDWRQKGAVTP----VKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDC 56
Query: 135 D----ASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAF 190
           D       G  P    +    Y + Y+    +        S EK             G +
Sbjct: 57  DRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREK-------------GPY 103
Query: 191 TVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALG 250
               D +     R   P NE   +    ++I +    +  E A     D  LY+ G  +G
Sbjct: 104 AAKTDGV-----RQVQPYNEGALL----YSIANQPVSVVLEAAG---KDFQLYRGGIFVG 151
Query: 251 ------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGIESS 300
                  HA+  +G+G +      Y LI NSW T WG+NG  +I RG       CG+ +S
Sbjct: 152 PCGNKVDHAVAAVGYGPN------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTS 205

>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of Recombinant Human Stefin B In Complex With The Cysteine Proteinase Papain: A Novel Type Of Proteinase Inhibitor Interaction Length = 212

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 16/72 (22%)
Query: 239 DLILYKSGKALG------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK 292
           D  LY+ G  +G       HA+  +G+G +      Y LI NSW T WG+NG  +I RG 
Sbjct: 140 DFQLYRGGIFVGPCGNKVDHAVAAVGYGPN------YILIKNSWGTGWGENGYIRIKRGT 193
Query: 293 DE----CGIESS 300
                 CG+ +S
Sbjct: 194 GNSYGVCGLYTS 205

>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease Ervatamin C Length = 208

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 78/221 (35%), Gaps = 30/221 (13%)
Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPK 143
           LP   D R K    P    +++QGSCGSCW    +        +N  R     S      
Sbjct: 1   LPEQIDWRKKGAVTP----VKNQGSCGSCWA---FSTVSTVESINQIRTGNLISLSE--- 50
Query: 144 CVRECQENYDVPYKKDLNFGAK---SYSVSSNEKSIMKEI-YEHGPVEGAFTVFDDLILY 199
                QE  D   K     G     +Y    N   I  +  Y +  V+G       ++  
Sbjct: 51  -----QELVDCDKKNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAASKVVSI 105
Query: 200 KSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA-FTVFDDLILYKSGKALGGHAIRILG 258
                    NE      +   ++ +T  + A  A F  +   I          H + I+G
Sbjct: 106 DGYNGVPFCNEXALKQAV--AVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVG 163
Query: 259 WGEDEKSKEKYWLIANSWNTDWGDNGLFKILR--GKDECGI 297
           +      +  YW++ NSW   WG+ G  ++LR  G   CGI
Sbjct: 164 Y------QANYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGI 198

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	309
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	1e-80
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	1e-08
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	7e-72
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	1e-16
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	1e-09
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	4e-71
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	4e-15
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	9e-10
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	6e-70
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	6e-15
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	5e-10
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	5e-58
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	1e-07
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	5e-55
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	3e-05
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	2e-29
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	2e-15
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	7e-14
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	1e-12
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	3e-12
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	7e-12
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	7e-04
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	8e-12
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	2e-04
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	6e-11
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	2e-10
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	4e-10
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	8e-10
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	1e-09
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	1e-09
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	1e-09
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	2e-09
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	2e-09
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	3e-09
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	3e-04
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	4e-09
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	4e-09
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	7e-04
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	5e-09
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	6e-09
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	6e-09
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	9e-09
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	9e-09
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	1e-08
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	2e-04
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	2e-08
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	2e-08
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	2e-08
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	3e-08
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	4e-08
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	6e-04
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	4e-08
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	5e-08
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	7e-08
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	7e-05

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score =  246 bits (630), Expect = 1e-80
 Identities = 94/330 (28%), Positives = 121/330 (36%), Gaps = 105/330 (31%)

Query: 40  QAEKNS-LSNIPRAHLKSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCP 98
           +A+ +  + NI     K   GV    N  +          E    LP++FDS   WPNCP
Sbjct: 27  KAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPNCP 86

Query: 99  TIREIRDQGSCGSCW-------------------------------------GC------ 115
           TI +I DQ +CGSCW                                     GC      
Sbjct: 87  TIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGGDPD 146

Query: 116 ----------------RPYEIAPCEHHVNGTR--PSCDASKGHTPKCVRECQENYDVPYK 157
                           +PY    C HH       P C      TPKC   C +       
Sbjct: 147 RAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPT---IP 203

Query: 158 KDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLI 217
                   SY++   E   M+E++  GP E AF V++D I Y SG               
Sbjct: 204 VVNYRSWTSYAL-QGEDDYMRELFFRGPFEVAFDVYEDFIAYNSG--------------- 247

Query: 218 KWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWN 277
                             V+       SG+ LGGHA+R++GWG        YW IANSWN
Sbjct: 248 ------------------VYHH----VSGQYLGGHAVRLVGWGTSN--GVPYWKIANSWN 283

Query: 278 TDWGDNGLFKILRGKDECGIESSITAGVPK 307
           T+WG +G F I RG  ECGIE   +AG+P 
Sbjct: 284 TEWGMDGYFLIRRGSSECGIEDGGSAGIPL 313

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 9   CGFGCNGGFPGMAWRYWVKSGIVSGGAY 36
           CG GCNGG P  AW Y+  +G+VS    
Sbjct: 136 CGDGCNGGDPDRAWAYFSSTGLVSDYCQ 163

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score =  223 bits (571), Expect = 7e-72
 Identities = 100/203 (49%), Positives = 124/203 (61%), Gaps = 40/203 (19%)

Query: 107 GSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKS 166
           G   S  GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D ++G  S
Sbjct: 155 GLYESHVGCRPYSIPPCEHHVNGSRPPCT-GEGDTPKCSKICEPGYSPTYKQDKHYGYNS 213

Query: 167 YSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTS 226
           YSVS++EK IM EIY++GPVEGAF+V+ D +LYKSG                        
Sbjct: 214 YSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSG------------------------ 249

Query: 227 QLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLF 286
                    V+       +G+ +GGHAIRILGWG +      YWL+ANSWNTDWGDNG F
Sbjct: 250 ---------VYQH----VTGEMMGGHAIRILGWGVENG--TPYWLVANSWNTDWGDNGFF 294

Query: 287 KILRGKDECGIESSITAGVPKLD 309
           KILRG+D CGIES + AG+P+ D
Sbjct: 295 KILRGQDHCGIESEVVAGIPRTD 317

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score = 77.8 bits (192), Expect = 1e-16
 Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 6/74 (8%)

Query: 40  QAEKNSLSNIPRAHLKSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPT 99
           QA  N   N+  ++LK   G      L   + P+ + ++E D  LPA+FD+R +WP CPT
Sbjct: 26  QAGHNF-YNVDMSYLKRLCGTF----LGGPKPPQRVMFTE-DLKLPASFDAREQWPQCPT 79

Query: 100 IREIRDQGSCGSCW 113
           I+EIRDQGSCGSCW
Sbjct: 80  IKEIRDQGSCGSCW 93

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 9   CGFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQ 40
           CG GCNGG+P  AW +W + G+VSGG Y S  
Sbjct: 130 CGDGCNGGYPAEAWNFWTRKGLVSGGLYESHV 161

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score =  219 bits (561), Expect = 4e-71
 Identities = 99/205 (48%), Positives = 122/205 (59%), Gaps = 40/205 (19%)

Query: 105 DQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGA 164
             G   S  GCRPY I PCE HVNG RP C   +G TPKC + C+  Y   YK+D ++G 
Sbjct: 96  SGGLYESHVGCRPYSIPPCEAHVNGARPPCT-GEGDTPKCSKICEPGYSPTYKQDKHYGY 154

Query: 165 KSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDN 224
            SYSVS++EK IM EIY++GPVEGAF+V+ D +LYKSG                      
Sbjct: 155 NSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSG---------------------- 192

Query: 225 TSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
                      V+       +G+ +GGHAIRILGWG +      YWL+ANSWNTDWGDNG
Sbjct: 193 -----------VYQH----VTGEMMGGHAIRILGWGVENG--TPYWLVANSWNTDWGDNG 235

Query: 285 LFKILRGKDECGIESSITAGVPKLD 309
            FKILRG+D CGIES + AG+P+ D
Sbjct: 236 FFKILRGQDHCGIESEVVAGIPRTD 260

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score = 72.7 bits (179), Expect = 4e-15
 Identities = 25/37 (67%), Positives = 31/37 (83%), Gaps = 1/37 (2%)

Query: 77  YSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCW 113
           ++E D  LPA+FD+R +WP CPTI+EIRDQGSCGS W
Sbjct: 1   FTE-DLKLPASFDAREQWPQCPTIKEIRDQGSCGSAW 36

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score = 57.3 bits (139), Expect = 9e-10
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 9   CGFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQ 40
           CG GCNGG+P  AW +W + G+VSGG Y S  
Sbjct: 73  CGDGCNGGYPAEAWNFWTRKGLVSGGLYESHV 104

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score =  216 bits (553), Expect = 6e-70
 Identities = 83/202 (41%), Positives = 111/202 (54%), Gaps = 39/202 (19%)

Query: 105 DQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGA 164
              S  +  GC PY    CEHH  G  P C +    TP+C + CQ+ Y  PY +D + G 
Sbjct: 91  TGSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGK 150

Query: 165 KSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDN 224
            SY+V ++EK+I KEI ++GPVE  FTV++D + YKSG                      
Sbjct: 151 SSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSG---------------------- 188

Query: 225 TSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
                      ++       +G+ LGGHAIRI+GWG +  +K  YWLIANSWN DWG+NG
Sbjct: 189 -----------IYKH----ITGETLGGHAIRIIGWGVE--NKAPYWLIANSWNEDWGENG 231

Query: 285 LFKILRGKDECGIESSITAGVP 306
            F+I+RG+DEC IES +TAG  
Sbjct: 232 YFRIVRGRDECSIESEVTAGRI 253

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score = 71.9 bits (177), Expect = 6e-15
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 83  DLPANFDSRTKWPNCPTIREIRDQGSCGSCW 113
           ++P++FDSR KWP C +I  IRDQ  CGSCW
Sbjct: 2   EIPSSFDSRKKWPRCKSIATIRDQSRCGSCW 32

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score = 58.0 bits (141), Expect = 5e-10
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 9   CGFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQAEK 43
           CG GC GG  G AW YWVK GIV+G +  +    +
Sbjct: 68  CGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCE 102

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score =  186 bits (475), Expect = 5e-58
 Identities = 48/298 (16%), Positives = 75/298 (25%), Gaps = 123/298 (41%)

Query: 81  DEDLPANFDSRTKWPNCPTIREIRDQ---GSCGSCW------------------------ 113
             DLP ++D R            R+Q     CGSCW                        
Sbjct: 33  PADLPKSWDWRNVDG-VNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTL 91

Query: 114 -------------GC----------------------RPYEIAPCEHHVNGTRPSCDASK 138
                         C                        Y+    E        +C    
Sbjct: 92  LSVQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTC---- 147

Query: 139 GHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLIL 198
                  +EC    +    +        Y   S  + +M EIY +GP+       + L  
Sbjct: 148 ----NEFKECHAIRNYTLWRV-----GDYGSLSGREKMMAEIYANGPISCGIMATERLAN 198

Query: 199 YKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILG 258
           Y  G                                 ++ +            H + + G
Sbjct: 199 YTGG---------------------------------IYAE----YQDTTYINHVVSVAG 221

Query: 259 WGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECG--------IESSITAGVPKL 308
           WG  +    +YW++ NSW   WG+ G  +I+    + G        IE   T G P +
Sbjct: 222 WGISD--GTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGDPIV 277

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 7/28 (25%), Positives = 8/28 (28%)

Query: 9   CGFGCNGGFPGMAWRYWVKSGIVSGGAY 36
               C GG     W Y  + GI      
Sbjct: 102 NAGSCEGGNDLSVWDYAHQHGIPDETCN 129

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score =  183 bits (467), Expect = 5e-55
 Identities = 69/335 (20%), Positives = 96/335 (28%), Gaps = 118/335 (35%)

Query: 34  GAYGSKQAEKNSLSNIPRAHLKSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTK 93
                          +    +    G H          P      +    LP ++D R  
Sbjct: 157 IQKSWTATTYMEYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKILFLPTSWDWRNV 216

Query: 94  WPNCPTIREIRDQGSCGSCW-------------------------------------GC- 115
                 +  +R+Q SCGSC+                                     GC 
Sbjct: 217 HG-INFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCE 275

Query: 116 ----------------------RPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYD 153
                                  PY          GT   C        K   +C   Y 
Sbjct: 276 GGFPYLIAGKYAQDFGLVEEACFPYT---------GTDSPC--------KMKEDCFRYYS 318

Query: 154 VPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTA 213
             Y          +    NE  +  E+  HGP+  AF V+DD + YK G           
Sbjct: 319 SEYHYV-----GGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKG----------- 362

Query: 214 MSLIKWTIRDNTSQLGAEGAFTVFDD--LILYKSGKALGGHAIRILGWGEDEKSKEKYWL 271
                                 ++    L    +   L  HA+ ++G+G D  S   YW+
Sbjct: 363 ----------------------IYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWI 400

Query: 272 IANSWNTDWGDNGLFKILRGKDECGIESSITAGVP 306
           + NSW T WG+NG F+I RG DEC IES   A  P
Sbjct: 401 VKNSWGTGWGENGYFRIRRGTDECAIESIAVAATP 435

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 9   CGFGCNGGFPGMA-WRYWVKSGIVSGGAY 36
              GC GGFP +   +Y    G+V    +
Sbjct: 270 YAQGCEGGFPYLIAGKYAQDFGLVEEACF 298

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score =  112 bits (282), Expect = 2e-29
 Identities = 45/309 (14%), Positives = 76/309 (24%), Gaps = 121/309 (39%)

Query: 55  KSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQ---GS--- 108
           KS  G  PD  +   R         V   LP   D    +        + DQ   GS   
Sbjct: 30  KSGYGYIPD--IADIRDFSYTPEKSVIAALPPKVDLTPPFQ-------VYDQGRIGSCTA 80

Query: 109 ------------------------------------CGSCWG------------------ 114
                                                 +                     
Sbjct: 81  NALAAAIQFERIHDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCP 140

Query: 115 --CRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYS-VSS 171
               PY   P +       P   ASK  + +C           YK   N+    YS V+ 
Sbjct: 141 EKEWPYGDTPADPRTEEFPPGAPASKKPSDQC-----------YKDAQNYKITEYSRVAQ 189

Query: 172 NEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAE 231
           +   +   +    P    F+V++  +   S    +P                        
Sbjct: 190 DIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPLPTK-------------------- 229

Query: 232 GAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRG 291
                        +    GGHA+  +G+ ++ +    ++ I NSW  + G++G F +   
Sbjct: 230 -------------NDTLEGGHAVLCVGYDDEIR----HFRIRNSWGNNVGEDGYFWMPYE 272

Query: 292 KDE-CGIES 299
                 +  
Sbjct: 273 YISNTQLAD 281

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 34/199 (17%), Positives = 57/199 (28%), Gaps = 43/199 (21%)

Query: 117 PYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYS--VSSNEK 174
           PY                     +  K +    E   +  K    + ++ +   + +  K
Sbjct: 100 PYNYVKVGEQCPKVEDHWMNLWDNG-KILHNKNEPNSLDGKGYTAYESERFHDNMDAFVK 158

Query: 175 SIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAF 234
            I  E+   G V       + +    SG+                               
Sbjct: 159 IIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKN--------------------------- 191

Query: 235 TVFDDLILYKSGKALGGHAIRILGWG---EDEKSKEKYWLIANSWNTDWGDNGLFKILR- 290
                      G     HA+ I+G+G     E  K+ YW++ NSW   WGD G FK+   
Sbjct: 192 ---------LCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMY 242

Query: 291 GKDECGIESSITAGVPKLD 309
           G   C      +  +  +D
Sbjct: 243 GPTHCHFNFIHSVVIFNVD 261

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score = 68.6 bits (169), Expect = 7e-14
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 36/128 (28%)

Query: 170 SSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLG 229
            ++E+++++ +  + PV  AF V +D ++Y+ G                           
Sbjct: 118 MNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKG--------------------------- 150

Query: 230 AEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKIL 289
                 ++     +K+   +  HA+  +G+GE+      YW++ NSW   WG NG F I 
Sbjct: 151 ------IYSSTSCHKTPDKVN-HAVLAVGYGEENG--IPYWIVKNSWGPQWGMNGYFLIE 201

Query: 290 RGKDECGI 297
           RGK+ CG+
Sbjct: 202 RGKNMCGL 209

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score = 64.8 bits (159), Expect = 1e-12
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 37/132 (28%)

Query: 166 SYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNT 225
           S  +S NE+ +   + + GP+  A      +  Y+ G                       
Sbjct: 110 SVELSQNEQKLAAWLAKRGPISVAINA-FGMQFYRHG----------------------- 145

Query: 226 SQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGL 285
                     +   L    S   +  HA+ ++G+G+   S   +W I NSW TDWG+ G 
Sbjct: 146 ----------ISRPLRPLCSPWLID-HAVLLVGYGQR--SDVPFWAIKNSWGTDWGEKGY 192

Query: 286 FKILRGKDECGI 297
           + + RG   CG+
Sbjct: 193 YYLHRGSGACGV 204

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215

 Score = 63.7 bits (156), Expect = 3e-12
 Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 41/129 (31%)

Query: 169 VSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQL 228
           +  +E  I   +  +GPV  A       + Y  G                          
Sbjct: 118 LPQDEAQIAAWLAVNGPVAVAVDA-SSWMTYTGG-------------------------- 150

Query: 229 GAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKI 288
                  V          + L  H + ++G+ +   +   YW+I NSW T WG+ G  +I
Sbjct: 151 -------VMTS----CVSEQLD-HGVLLVGYNDS--AAVPYWIIKNSWTTQWGEEGYIRI 196

Query: 289 LRGKDECGI 297
            +G ++C +
Sbjct: 197 AKGSNQCLV 205

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score = 63.8 bits (156), Expect = 7e-12
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIES 299
           HA+ I+G+         YW++ NSW+T+WGDNG        D   IE 
Sbjct: 250 HAVNIVGYSNA--QGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEE 295

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 4/37 (10%)

Query: 77  YSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCW 113
              ++ + PA  D R       T   IR QG CGS W
Sbjct: 83  ACSINGNAPAEIDLRQM--RTVT--PIRMQGGCGSAW 115

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A* Length = 222

 Score = 62.5 bits (153), Expect = 8e-12
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIES 299
           HA+ I+G+   +     YW++ NSW+T+WGDNG        D   IE 
Sbjct: 170 HAVNIVGYSNAQG--VDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEE 215

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 33/129 (25%), Positives = 48/129 (37%), Gaps = 39/129 (30%)

Query: 170 SSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLG 229
             +E  +   +   GPV  AF   D    Y  G ++ P  ET   +              
Sbjct: 232 GPDENMLADMVATKGPVAVAFDADDPFGSYSGGVYYNPTCETNKFT-------------- 277

Query: 230 AEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKIL 289
                                 HA+ I+G+G +  + + YWL+ NSW   WG +G FKI 
Sbjct: 278 ----------------------HAVLIVGYGNE--NGQDYWLVKNSWGDGWGLDGYFKIA 313

Query: 290 RGKD-ECGI 297
           R  +  CGI
Sbjct: 314 RNANNHCGI 322

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 3/49 (6%)

Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE---CGI 297
           H + ++G+G D++SK+ +W++ NSW T WG +G   +   K E   CG+
Sbjct: 167 HGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGL 215

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 11/138 (7%)

Query: 169 VSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSL-----IKWTIRD 223
           V +N        Y +  V+G   +   +     G   VP + +  +       +   I  
Sbjct: 75  VITNGGIASDANYPYTGVDGTCDLNKPIAARIDGYTNVPNSSSALLDAVAKQPVSVNIYT 134

Query: 224 NTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDN 283
           +++         +F           +  H + I+G+G +  +   YW++ NSW T+WG +
Sbjct: 135 SSTSFQLYTGPGIFAGSSCSDDPATVD-HTVLIVGYGSNGTNA-DYWIVKNSWGTEWGID 192

Query: 284 GLFKILRGKDE----CGI 297
           G   I R  +     C I
Sbjct: 193 GYILIRRNTNRPDGVCAI 210

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score = 56.8 bits (138), Expect = 8e-10
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 40/136 (29%)

Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
           +   EK++MK +   GP+  A     +  + YK G +F P                ++  
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEP--------------DCSSED 160

Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSK--EKYWLIANSWNTDWGDNGL 285
           +          D            H + ++G+G +       KYWL+ NSW  +WG  G 
Sbjct: 161 M----------D------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 198

Query: 286 FKILRGKD-ECGIESS 300
            K+ + +   CGI S+
Sbjct: 199 VKMAKDRRNHCGIASA 214

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGI 297
           H + I+G+G +      YW+  NSW  DWG +G  +I R        CG+
Sbjct: 168 HFVLIVGYGSE--DGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGM 215

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score = 56.3 bits (137), Expect = 1e-09
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD----ECGI 297
           HA+  +G+G+     + Y LI NSW T WG+ G  +I R        CG+
Sbjct: 159 HAVTAVGYGKS--GGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGL 206

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 39/132 (29%)

Query: 170 SSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLG 229
           S +E S+   + + GPV  A    D+L  Y  G F+      + ++              
Sbjct: 230 SGDENSLADAVGQAGPVAVAIDATDELQFYSGGLFYDQTCNQSDLN-------------- 275

Query: 230 AEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKIL 289
                                 H + ++G+G D    + YW++ NSW + WG++G ++ +
Sbjct: 276 ----------------------HGVLVVGYGSDNG--QDYWILKNSWGSGWGESGYWRQV 311

Query: 290 RGKD-ECGIESS 300
           R     CGI ++
Sbjct: 312 RNYGNNCGIATA 323

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 40/138 (28%)

Query: 167 YSVSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNT 225
             +   EK++MK +   GP+  A     +  + YK G +F P   +  M           
Sbjct: 209 VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD---------- 258

Query: 226 SQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSK--EKYWLIANSWNTDWGDN 283
                                     H + ++G+G +       KYWL+ NSW  +WG  
Sbjct: 259 --------------------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMG 292

Query: 284 GLFKILRGKD-ECGIESS 300
           G  K+ + +   CGI S+
Sbjct: 293 GYVKMAKDRRNHCGIASA 310

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 20/84 (23%)

Query: 233 AFTVFDDLILYKSG-------KALGGHAIRILGWGEDE--------KSKEKYWLIANSWN 277
           +    DD   Y+ G        A   HA+ ++G+G  +          K  Y++I NSW 
Sbjct: 151 SIAASDDFAFYRGGFYDGECGAAPN-HAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWG 209

Query: 278 TDWGDNGLFKILRGKDE----CGI 297
           +DWG+ G   +   ++     C I
Sbjct: 210 SDWGEGGYINLETDENGYKKTCSI 233

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 39/129 (30%)

Query: 170 SSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLG 229
           S +E  +   +   GP   A  V  D ++Y+SG +                         
Sbjct: 207 SGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGIYQSQ---------------------- 244

Query: 230 AEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKIL 289
              +    +             HA+  +G+G        YW++ NSW   WG+ G  +++
Sbjct: 245 -TCSPLRVN-------------HAVLAVGYGTQ--GGTDYWIVKNSWGLSWGERGYIRMV 288

Query: 290 RGKD-ECGI 297
           R +   CGI
Sbjct: 289 RNRGNMCGI 297

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 67  PANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCW 113
            ++ L   + Y   +  +P   D R       T  E++DQG+CGS W
Sbjct: 75  ASDILSHGVPYEANNRAVPDKIDWRES--GYVT--EVKDQGNCGSGW 117

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score = 54.8 bits (133), Expect = 4e-09
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 10/50 (20%)

Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD----ECGI 297
           HA+  +G+G +      Y LI NSW T WG+NG  +I RG       CG+
Sbjct: 159 HAVAAVGYGPN------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 20/84 (23%)

Query: 233 AFTVFDDLILYKSG-------KALGGHAIRILGWGEDE--------KSKEKYWLIANSWN 277
           +  V DD   YK G         L  HA+ ++G+G  E          K  Y++I NSW 
Sbjct: 149 SVAVSDDFAFYKEGIFDGECGDQLN-HAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWG 207

Query: 278 TDWGDNGLFKILRGKDE----CGI 297
             WG+ G   I   +      CG+
Sbjct: 208 QQWGERGFINIETDESGLMRKCGL 231

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 4/37 (10%)

Query: 77  YSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCW 113
           Y   +    A +D R    +  T   ++DQ +CGSCW
Sbjct: 11  YRGEENFDHAAYDWRLH--SGVT--PVKDQKNCGSCW 43

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 242 LYKSG-------KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE 294
            Y  G         L  H + ++G+G  E  K  YW + NSW   WG+ G  ++ +    
Sbjct: 151 FYSEGVFTGECGTELD-HGVAVVGYGVAEDGK-AYWTVKNSWGPSWGEQGYIRVEKDSGA 208

Query: 295 ----CGI 297
               CGI
Sbjct: 209 SGGLCGI 215

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score = 54.4 bits (132), Expect = 6e-09
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 18/67 (26%)

Query: 242 LYKSG-------KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE 294
            Y+ G        ++  HA+  +G+G D      Y LI NSW T WG+ G  +I RG   
Sbjct: 143 NYRGGIFAGPCGTSID-HAVAAVGYGND------YILIKNSWGTGWGEGGYIRIKRGSGN 195

Query: 295 ----CGI 297
               CG+
Sbjct: 196 PQGACGV 202

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score = 55.3 bits (134), Expect = 6e-09
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD-ECGIESS 300
           HA+  +G+G  +    K+W+I NSW  +WG+ G   + R K+  CGI + 
Sbjct: 261 HAVLAVGYGIQKG--NKHWIIKNSWGENWGNKGYILMARNKNNACGIANL 308

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score = 53.7 bits (130), Expect = 9e-09
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD-ECGI 297
           H + ++G+G+     ++YWL+ NSW  ++G+ G  ++ R K   CGI
Sbjct: 165 HGVLVVGYGDLNG--KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 209

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A Length = 220

 Score = 53.7 bits (130), Expect = 9e-09
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE---CGI 297
           HA+ I+G+G +      YW++ NSW T WG+ G  +I R       CGI
Sbjct: 162 HAVTIVGYGTE--GGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 10/64 (15%)

Query: 242 LYKSGKALGG-------HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD- 293
           LY+SG            H + ++G+G+     ++YWL+ NSW  ++G+ G  ++ R K  
Sbjct: 245 LYRSGVYYEPSCTQNVNHGVLVVGYGDLNG--KEYWLVKNSWGHNFGEEGYIRMARNKGN 302

Query: 294 ECGI 297
            CGI
Sbjct: 303 HCGI 306

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 64  YNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCW 113
             +P+     +   S  +  LP + D R K   C T  E++ QGSCG+ W
Sbjct: 79  LRVPSQWQRNITYKSNPNRILPDSVDWREK--GCVT--EVKYQGSCGAAW 124

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD-ECGI 297
           HA+  +G+G  +    K+W+I NSW  +WG+ G   + R K+  CGI
Sbjct: 162 HAVLAVGYGIQKG--NKHWIIKNSWGENWGNKGYILMARNKNNACGI 206

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 10/50 (20%)

Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGI 297
           HA+  +G+G+       Y L+ NSW  +WG+ G  +I R        CG+
Sbjct: 159 HAVTAVGYGKT------YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGV 202

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD----ECGI 297
            A+  +G+G+     + Y LI NSW T WG+ G  +I R        CG+
Sbjct: 265 GAVTAVGYGKS--GGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGL 312

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 201 SGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWG 260
            G   VP     A+           +   +   F  +   I          H + I+G+ 
Sbjct: 106 DGYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGYQ 165

Query: 261 EDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE--CGI 297
            +      YW++ NSW   WG+ G  ++LR      CGI
Sbjct: 166 AN------YWIVRNSWGRYWGEKGYIRMLRVGGCGLCGI 198

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 14/67 (20%)

Query: 242 LYKSG-------KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE 294
           LY+SG        +   HA+ ++G+G +  + + +W++ NSW  +WG++G  +  R  + 
Sbjct: 145 LYRSGIFTGSCNISAN-HALTVVGYGTE--NDKDFWIVKNSWGKNWGESGYIRAERNIEN 201

Query: 295 ----CGI 297
               CGI
Sbjct: 202 PDGKCGI 208

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score = 39.4 bits (93), Expect = 6e-04
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)

Query: 82  EDLPANFDSRTKWPNCPTIREIRDQGSCGSCW 113
           +DLP + D R           +++QG CGSCW
Sbjct: 1   DDLPDSIDWREN--GAVV--PVKNQGGCGSCW 28

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score = 51.7 bits (125), Expect = 4e-08
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 14/67 (20%)

Query: 242 LYKSG-------KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD- 293
            Y SG        A   H + I+G+G    S + YW++ NSW  +WG+ G   + R    
Sbjct: 142 HYSSGIFTGPCGTAQN-HGVVIVGYGTQ--SGKNYWIVRNSWGQNWGNQGYIWMERNVAS 198

Query: 294 ---ECGI 297
               CGI
Sbjct: 199 SAGLCGI 205

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score = 51.8 bits (125), Expect = 5e-08
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 13/67 (19%)

Query: 242 LYKSG-------KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE 294
            Y  G         L  H + I+G+G       KYW + NSW  +WG+ G  ++ RG  +
Sbjct: 146 FYSEGVFTGSCGTELD-HGVAIVGYGTTIDGT-KYWTVKNSWGPEWGEKGYIRMERGISD 203

Query: 295 ----CGI 297
               CGI
Sbjct: 204 KEGLCGI 210

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score = 51.0 bits (123), Expect = 7e-08
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 14/67 (20%)

Query: 242 LYKSG-------KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD- 293
           LYKSG         L  HA+  +G+G      + Y +I NSW  +WG+ G  ++ R    
Sbjct: 143 LYKSGVFDGPCGTKLD-HAVTAVGYGTS--DGKNYIIIKNSWGPNWGEKGYMRLKRQSGN 199

Query: 294 ---ECGI 297
               CG+
Sbjct: 200 SQGTCGV 206

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 15/83 (18%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 206 VPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKS 265
           + G++      +K   +   ++   +   T  +  + Y + +    H ++I G  +D++ 
Sbjct: 272 LSGSDMAHWLKLKPEEKKLNTKPQPQKWCTQAERQLAYDNYETTDDHGMQIYGIAKDQE- 330

Query: 266 KEKYWLIANSWNTDWGDNGLFKI 288
             +Y+++ NSW T+   NG++  
Sbjct: 331 GNEYYMVKNSWGTNSKYNGIWYA 353

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	309
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	100.0
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	100.0
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	100.0
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	100.0
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	100.0
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	100.0
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	100.0
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	100.0
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	100.0
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	100.0
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	100.0
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	100.0
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	100.0
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	100.0
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	100.0
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	100.0
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	100.0
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	100.0
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	100.0
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	100.0
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	100.0
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	100.0
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	100.0
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	100.0
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	100.0
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	100.0
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	100.0
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	100.0
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	100.0
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	100.0
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	100.0
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	100.0
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	100.0
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	100.0
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	100.0
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	100.0
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	100.0
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	100.0
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	100.0
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	100.0
2cb5_A	453	Protein (bleomycin hydrolase); aminopeptidase, cys	99.92
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	99.91
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	99.66
2l95_A	80	Crammer, LP06209P; cysteine proteinase inhibitor,	97.65
3f75_P	106	Toxopain-2, cathepsin L propeptide; medical struct	97.08
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	96.75
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	93.52
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	91.29
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	90.71
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	90.52
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	88.68
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	87.7
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	87.69
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	87.66
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	87.25
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	86.62
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	86.27
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	86.23
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	86.2
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	86.09
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	85.69
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	85.25
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	85.2
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	85.16
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	84.67
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	84.27
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	84.24
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	84.22
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	84.22
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	84.08
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	83.86
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	83.6
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	83.13
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	82.81
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	82.81
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	82.76
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	82.5
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	82.03
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	81.23
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	80.02

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=100.00  E-value=6.8e-57  Score=423.57  Aligned_cols=240  Identities=48%  Similarity=0.933  Sum_probs=185.9

Q ss_pred             HHHHHHHhccccCCCCCCcccccccCCCCcHHHHHHHhCCCCCCCCCCCCCCcccccCCCCCCCCCceecCCCCCCCCCC
Q psy8713          21 AWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTI  100 (309)
Q Consensus        21 a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~~cg~v  100 (309)
                      .=++|.++|-.   + .+|++|+| |+++++||++++||.++...  .  .+..... ....+||++||||++||+|+.|
T Consensus        11 ~~~~i~~~N~~---~-~~~~~~~n-f~~~~~e~~~~~lg~~~~~~--~--~~~~~~~-~~~~~lP~s~DwR~~~~~c~~v   80 (317)
T 3pbh_A           11 SDELVNYVNKR---N-TTWQAGHN-FYNVDMSYLKRLCGTFLGGP--K--PPQRVMF-TEDLKLPASFDAREQWPQCPTI   80 (317)
T ss_dssp             CHHHHHHHHHH---T-CSEEECCC-CSSCCHHHHHHTCCBCTTCC--C--CSEEECC-CSCCCCCSSEEHHHHCTTCGGG
T ss_pred             cHHHHHHHHCC---C-CCeEEeec-cccCCHHHHHHHcCCCCCcc--c--cCccccc-ccccCCCCCEechhccCCCCCc
Confidence            34677777732   3 48999999 77999999999999876541  1  1222211 1246899999999999999999


Q ss_pred             ccccCccCCCCCc----------------------CCCccccCCC---------CCCC----------CC--------CC
Q psy8713         101 REIRDQGSCGSCW----------------------GCRPYEIAPC---------EHHV----------NG--------TR  131 (309)
Q Consensus       101 tpVkdQg~CGSCW----------------------~cs~~~~~~C---------~~~~----------~g--------~~  131 (309)
                      +||||||.|||||                      ..|++++.+|         .++.          +|        ..
T Consensus        81 tpVkdQg~CGSCWAFsa~~ale~~~~i~~~~~~~~~LSeq~LvdC~~~~~~~GC~GG~~~~A~~yi~~~Gi~te~~Y~~~  160 (317)
T 3pbh_A           81 KEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESH  160 (317)
T ss_dssp             TCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHSCTTTBCGGGCBCHHHHHHHHHHTCEEBBCSTTCC
T ss_pred             CCccccCCccchHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHhccccCCCCCCCCCHHHHHHHHHHhCCCcchhccCC
Confidence            9999999999999                      2334444444         3321          00        01


Q ss_pred             CCCCCCC------------------CCCcccccccccCccccccccccceeeeeeecchHHHHHHHHHhcCCEEEEEecc
Q psy8713         132 PSCDASK------------------GHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVF  193 (309)
Q Consensus       132 ~~C~~~~------------------~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~~~~ik~~l~~~GPv~v~~~~~  193 (309)
                      ..|.++.                  .+.+.|...|...+...+..+..+....|.++.++++||++|+++|||+|+|.++
T Consensus       161 ~~c~PY~~~~c~~~~~~~~~~C~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~v~~~e~~i~~~i~~~GPV~v~i~~~  240 (317)
T 3pbh_A          161 VGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY  240 (317)
T ss_dssp             CBSSCCCSCCCCCCCTTCCSCCCSCCCCCCCCCSCCSSCCSCGGGSEECBCCCEEECSCHHHHHHHHHHHCCEEEEEEEE
T ss_pred             CCCcCcccCcccccccCcCCCCCCcCCCCcccccccCCCccceeeeeeeeeecccCCcHHHHHHHHHHHCCCEEEEEEec
Confidence            1222322                  1233444556655655666666676666788889999999999999999999999


Q ss_pred             cccccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEE
Q psy8713         194 DDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIA  273 (309)
Q Consensus       194 ~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiik  273 (309)
                      ++|++|++|||.                                     ..|+...++|||+|||||++  ++++|||||
T Consensus       241 ~~f~~Y~~GVy~-------------------------------------~~~~~~~~~HaV~iVGyG~~--~g~~YWivk  281 (317)
T 3pbh_A          241 SDFLLYKSGVYQ-------------------------------------HVTGEMMGGHAIRILGWGVE--NGTPYWLVA  281 (317)
T ss_dssp             GGGGGEEEEEEC-------------------------------------CCSCCEEEEEEEEEEEEEEE--TTEEEEEEE
T ss_pred             ccccCCCCcEEc-------------------------------------cCCCCCCCCEEEEEEEEEEe--CCeeEEEEE
Confidence            999999999998                                     44666677999999999998  889999999


Q ss_pred             cCCCCCCCCCceEEEEccCCccccCcceEEEeecCC
Q psy8713         274 NSWNTDWGDNGLFKILRGKDECGIESSITAGVPKLD  309 (309)
Q Consensus       274 NSWG~~WG~~Gy~~i~~g~n~cgi~~~~~~~~~~~~  309 (309)
                      ||||++|||+|||||+||.|+|||++.+++++|++|
T Consensus       282 NSWG~~WGe~GY~ri~rg~n~CgI~~~~~a~~p~~d  317 (317)
T 3pbh_A          282 NSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD  317 (317)
T ss_dssp             CSBCTTSTBTTEEEEECSSCGGGTTTSCEECCBCCC
T ss_pred             cCCCCCcCCCcEEEEEcCCCcccCCCceEeeecCCC
Confidence            999999999999999999999999999999999998

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=100.00  E-value=5.7e-55  Score=411.59  Aligned_cols=233  Identities=37%  Similarity=0.682  Sum_probs=143.3

Q ss_pred             CCcccccc-cCCCCcHHHHHHHhCCCCCCCCCCCCCCcccccCCCCCCCCCceecCCCCCCCCCCccccCccCCCCCc--
Q psy8713          37 GSKQAEKN-SLSNIPRAHLKSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCW--  113 (309)
Q Consensus        37 ~s~~~g~N-f~~~~~~e~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--  113 (309)
                      .+|++++| +|+|++.|||+++||.++.........+..........+||++||||++||+||+|+||||||.|||||  
T Consensus        24 ~~~~~~~n~~f~dlt~eE~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~w~~~g~vtpVkdQg~CGSCWAF  103 (325)
T 3hhi_A           24 GIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAV  103 (325)
T ss_dssp             --------------------------------CCSCBCCCCHHHHHCCCCSCEEHHHHSTTCTTTTCCCBCCSSBCHHHH
T ss_pred             CceEEecccccccCCHHHHHHHhCCCCCCcccccccCccccccccccCCCCcEehhHhcCCCCccccccCCCCccccHHH
Confidence            48999999 899999999999998765331000000111111111367999999999999999999999999999999  


Q ss_pred             -------------------CCCccccCCC--------CCCCCC-------CCCCCCCCCCCCc--ccc---------ccc
Q psy8713         114 -------------------GCRPYEIAPC--------EHHVNG-------TRPSCDASKGHTP--KCV---------REC  148 (309)
Q Consensus       114 -------------------~cs~~~~~~C--------~~~~~g-------~~~~C~~~~~~~~--~~~---------~~c  148 (309)
                                         ..|++++.+|        .++...       ..+.+.+..+|+.  .|.         ..|
T Consensus       104 sa~~alE~~~~i~~~~~~~~LSeQ~LvdC~~~~~~GC~GG~~~~A~~yi~~~Gi~~e~~yPY~~~~c~~~~~~~~~~~~C  183 (325)
T 3hhi_A          104 AAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPC  183 (325)
T ss_dssp             HHHHHHHHHHHHTSSCSSCCBCHHHHHHHCGGGBCTTBCBCHHHHHHHHHHTCBCBTTTSCCSSCCCBSSSCCTTCCCBG
T ss_pred             HHHHHHHHHHHHHhCCCccccCHHHHHHhccCCCCCCCCCCHHHHHHHHHHhCCCcccccCCccccccccccccccCCCC
Confidence                               2344444444        333100       1122222233442  111         223


Q ss_pred             cc-Cc----------cccccccccceeeeeeecchHHHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhhh
Q psy8713         149 QE-NY----------DVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLI  217 (309)
Q Consensus       149 ~~-~~----------~~~~~~~~~~~~~~~~v~~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~  217 (309)
                      .. .+          ...+..+..+.+..|.+ .++++||++|+++|||+|+|.++++|+.|++|||.            
T Consensus       184 ~~~~~~~~~c~~~c~~~~~~~~~~~~~~~y~v-~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GVy~------------  250 (325)
T 3hhi_A          184 SQFNFDTPKCDYTCDDPTIPVVNYRSWTSYAL-QGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYH------------  250 (325)
T ss_dssp             GGCCCCCCCCCSSCSSTTSCCCCBCEEEEEEE-CSHHHHHHHHHHHCCEEEEEEEEHHHHTCCSSEEC------------
T ss_pred             CCcccCCcchhhcccccccccceEEeecceEe-CCHHHHHHHHHHCCCEEEEEEeccccccccCceec------------
Confidence            21 00          01122233444556666 78999999999999999999999899999999998            


Q ss_pred             hhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEccCCcccc
Q psy8713         218 KWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGI  297 (309)
Q Consensus       218 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g~n~cgi  297 (309)
                                               ..++...++|||+|||||++  ++++|||||||||++|||+|||||+||.|+|||
T Consensus       251 -------------------------~~~~~~~~~HaV~iVGyG~~--~g~~YWivkNSWG~~WGe~GY~~i~rg~n~CGI  303 (325)
T 3hhi_A          251 -------------------------HVSGQYLGGHAVRLVGWGTS--NGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI  303 (325)
T ss_dssp             -------------------------CCSCCEEEEEEEEEEEEEEE--TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGT
T ss_pred             -------------------------CCCCCCCCCEEEEEEEEEec--CCceEEEEEeCCCCCcccCCEEEEEcCCCeecC
Confidence                                     34555567999999999988  899999999999999999999999999999999


Q ss_pred             CcceEEEeecCC
Q psy8713         298 ESSITAGVPKLD  309 (309)
Q Consensus       298 ~~~~~~~~~~~~  309 (309)
                      ++.+++++|++|
T Consensus       304 ~~~~~~g~p~~~  315 (325)
T 3hhi_A          304 EDGGSAGIPLAP  315 (325)
T ss_dssp             TSCEEEEEEC--
T ss_pred             ccceEEeecCCC
Confidence            999999999986

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=100.00  E-value=2.8e-51  Score=387.25  Aligned_cols=240  Identities=22%  Similarity=0.410  Sum_probs=176.4

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHHHHHHh-CCCCCCCCCCCCCCcccccC-----CCCCCCCCceec
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSWM-GVHPDYNLPANRLPELIGYS-----EVDEDLPANFDS   90 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~~l-g~~~~~~~~~~~~~~~~~~~-----~~~~~lP~~~Dw   90 (309)
                      ++..+.++|.+||...+.+-.+|++|+|+|+|++.|||++++ |.++...  ...........     ....+||++|||
T Consensus        45 iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lP~s~Dw  122 (331)
T 3qj3_A           45 IFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTPEEMKAYTHGLIMPAD--LHKNGIPIKTREDLGLNASVRYPASFDW  122 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCSEEECCSTTTTCCHHHHHHHHSCCCCCSS--TTTTCEEECSGGGGTCCSSCCCCSSEEG
T ss_pred             HHHHHHHHHHHHHhhhccCCCceeecccccccCCHHHHHHHhcccccccc--ccccCcccccccccccccccCCCcceec
Confidence            467788899999988766668999999999999999998865 4443221  10011111111     024579999999


Q ss_pred             CCCCCCCCCCccccCccCCCCCc----------------------CCCccccCCCCCCCC---C-----------CC-CC
Q psy8713          91 RTKWPNCPTIREIRDQGSCGSCW----------------------GCRPYEIAPCEHHVN---G-----------TR-PS  133 (309)
Q Consensus        91 R~~~~~cg~vtpVkdQg~CGSCW----------------------~cs~~~~~~C~~~~~---g-----------~~-~~  133 (309)
                      |++    |+|+||||||.|||||                      ..|++++.+|.....   |           .. +.
T Consensus       123 R~~----g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~~~LSeQ~LvdC~~~~~GC~GG~~~~a~~yi~~~~Gi  198 (331)
T 3qj3_A          123 RDQ----GMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQNGGI  198 (331)
T ss_dssp             GGG----TCSCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCTTSCCCBCHHHHHHHCTTSCGGGCCCHHHHHHHHHHHTCE
T ss_pred             ccC----CccCCCccCcccchhhHHHHHHHHHHHHHHHhCCCcccCcCHHHHhhhccCCCCCCCCCHHHHHHHHHHcCCc
Confidence            999    8999999999999999                      345566666654211   0           01 22


Q ss_pred             CCCCCCCCcccccccccCccccccccccceeeee-eecc-hHHHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcc
Q psy8713         134 CDASKGHTPKCVRECQENYDVPYKKDLNFGAKSY-SVSS-NEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNET  211 (309)
Q Consensus       134 C~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~-~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~  211 (309)
                      +.+..+|+......|.....     ...+.+..| .++. ++++||++|+++|||+|+|+++.+|+.|++|||..|    
T Consensus       199 ~~e~~yPY~~~~~~C~~~~~-----~~~~~i~~~~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y~~Gvy~~~----  269 (331)
T 3qj3_A          199 DSEGAYPYEMADGNCHYDPN-----QVAARLSGYVYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGGVYYNP----  269 (331)
T ss_dssp             EBTTTSCCCSSCCCCCCCTT-----SEEECCSEEEEESSCCHHHHHHHHHHHCCEEEEECCCTTGGGEEEEEECCT----
T ss_pred             CcccccCccCCCCCCCCCcc-----cceeEeeEEEEeCCCCHHHHHHHHHhCCCEEEEEEcccccccccCceEeCC----
Confidence            33334555554455642211     112223333 4554 899999999999999999999877999999999853    


Q ss_pred             hhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEcc
Q psy8713         212 TAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRG  291 (309)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g  291 (309)
                                                      .|+...++|||+|||||++  ++++|||||||||++|||+|||||+|+
T Consensus       270 --------------------------------~c~~~~~~HaV~iVGyg~~--~g~~yWivkNSWG~~WGe~GY~~i~r~  315 (331)
T 3qj3_A          270 --------------------------------TCETNKFTHAVLIVGYGNE--NGQDYWLVKNSWGDGWGLDGYFKIARN  315 (331)
T ss_dssp             --------------------------------TCCSSCCCEEEEEEEEEEE--TTEEEEEEECSBCTTSTBTTEEEEECS
T ss_pred             --------------------------------CCCCCcCCEEEEEEEEecc--CCceEEEEEcCCCCCcCCCCEEEEEcC
Confidence                                            4666678999999999998  889999999999999999999999999


Q ss_pred             C-CccccCcceEEEe
Q psy8713         292 K-DECGIESSITAGV  305 (309)
Q Consensus       292 ~-n~cgi~~~~~~~~  305 (309)
                      . |.|||++.+++++
T Consensus       316 ~~n~CgI~~~~~~p~  330 (331)
T 3qj3_A          316 ANNHCGIAGVASVPT  330 (331)
T ss_dssp             SSSGGGTTTSCEEEE
T ss_pred             CCCccCcCCceeeee
Confidence            8 9999999988764

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=100.00  E-value=2.2e-51  Score=387.51  Aligned_cols=240  Identities=20%  Similarity=0.388  Sum_probs=177.0

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHHHHHHhCCCCCCCCCCCCCCcccccCCCCCCCCCceecCCCCCC
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPN   96 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~~   96 (309)
                      ++..+.++|.+||...+.+-.+|++|+|+|+|++.|||++++|.++... +...............+||++||||++   
T Consensus        50 iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf~~~~g~~~~~~-~~~~~~~~~~~~~~~~~lP~~~DwR~~---  125 (329)
T 3qt4_A           50 IFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLAYVNRGKAQK-PKHPENLRMPYVSSKKPLAASVDWRSN---  125 (329)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSEEECCCGGGGCCHHHHHHHHHHTCCC-------CCEEECCCCCSCCCSCEECTTT---
T ss_pred             HHHHHHHHHHHHHhhhhcCCCCeEEeccccccCCHHHHHHhcCCccccc-ccccccccccccCCccCCCCCEEcccc---
Confidence            4677888999999987666689999999999999999988888664321 111100011111112589999999997   


Q ss_pred             CCCCccccCccCCCCCc--------------------CCCccccCCCCC---------CCCC-------CCCCCCCCCCC
Q psy8713          97 CPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEH---------HVNG-------TRPSCDASKGH  140 (309)
Q Consensus        97 cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~---------~~~g-------~~~~C~~~~~~  140 (309)
                        +||||||||.|||||                    ..|++++.+|..         +...       ..+.+.+..+|
T Consensus       126 --~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~LvdC~~~~g~~GC~GG~~~~a~~yi~~~Gi~~e~~yP  203 (329)
T 3qt4_A          126 --AVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDYGIMSESAYP  203 (329)
T ss_dssp             --SCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCTTBCCCHHHHHHHHHHSCBCBTTTSC
T ss_pred             --ccCCCccCCCCcChHHHHHHHHHHHHHHHHcCCcccCCHHHHHHhccccCCCCCCCCChhHHHHHHHHcCCCcHHHee
Confidence              499999999999999                    445555555543         2100       11334444456


Q ss_pred             CcccccccccCccccccccccceeeee-eecc-hHHHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhhhh
Q psy8713         141 TPKCVRECQENYDVPYKKDLNFGAKSY-SVSS-NEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIK  218 (309)
Q Consensus       141 ~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~-~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~  218 (309)
                      +......|.....     ...+.+..| .++. ++++||++|+++|||+|+|+++.+|+.|++|||..|           
T Consensus       204 Y~~~~~~C~~~~~-----~~~~~i~~~~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y~~GVy~~~-----------  267 (329)
T 3qt4_A          204 YEAQGDYCRFDSS-----QSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLFYDQ-----------  267 (329)
T ss_dssp             CCSSCCCCCCCGG-----GCCBCCSEEEECCTTCHHHHHHHHHHTCCEEEEECCCGGGTTEEEEEECCS-----------
T ss_pred             eecCCCCCCCCcc-----cceEEeceEEEecCCCHHHHHHHHHhCCCEEEEEecChhhhhccCceeecC-----------
Confidence            6555556643221     122233333 5554 789999999999999999999889999999999853           


Q ss_pred             hhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEccC-Ccccc
Q psy8713         219 WTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DECGI  297 (309)
Q Consensus       219 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g~-n~cgi  297 (309)
                                               .|+...++|||+|||||++  ++.+|||||||||++|||+|||||+|+. |.|||
T Consensus       268 -------------------------~c~~~~~~HaV~iVGyg~~--~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI  320 (329)
T 3qt4_A          268 -------------------------TCNQSDLNHGVLVVGYGSD--NGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGI  320 (329)
T ss_dssp             -------------------------SCCSSCCCEEEEEEEEEEE--TTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGT
T ss_pred             -------------------------CCCCCcCCEEEEEEEEEee--CCccEEEEEeCCCCcccCCcEEEEEeCCCCccCC
Confidence                                     4665668999999999998  7899999999999999999999999998 99999


Q ss_pred             CcceEEEe
Q psy8713         298 ESSITAGV  305 (309)
Q Consensus       298 ~~~~~~~~  305 (309)
                      ++.+++++
T Consensus       321 ~~~~~yp~  328 (329)
T 3qt4_A          321 ATAASYPA  328 (329)
T ss_dssp             TTTCEEEE
T ss_pred             CCceeEee
Confidence            99988765

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=100.00  E-value=1.6e-50  Score=379.75  Aligned_cols=239  Identities=21%  Similarity=0.369  Sum_probs=173.5

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHHHHH-HhCCCCCCCCCCCCCCcccccCCCCCC-CCCceecCCCC
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKS-WMGVHPDYNLPANRLPELIGYSEVDED-LPANFDSRTKW   94 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~-lP~~~DwR~~~   94 (309)
                      ++....++|.+||...+.+-.+|++|+|+|+|++.|||++ ++|.++...  ......... .....+ ||++||||++ 
T Consensus        34 iF~~N~~~I~~~N~~~~~g~~~~~~g~N~FaDlt~eEf~~~~~g~~~~~~--~~~~~~~~~-~~~~~~~lP~~~DwR~~-  109 (314)
T 1by8_A           34 IWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLS--HSRSNDTLY-IPEWEGRAPDSVDYRKK-  109 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCSEEECCCTTSSSCHHHHHHHSCCCCCCSC--CCCSSSSSB-CCCCSSCCCSCCBSTTT-
T ss_pred             HHHHHHHHHHHHhhcccccCcceEEcccccccCCHHHHHHHhccCCCCcc--cccCCcccc-ccccccCCCCeEeCCCC-
Confidence            4677888999999865444468999999999999999865 555543321  100101111 111223 9999999999 


Q ss_pred             CCCCCCccccCccCCCCCc--------------------CCCccccCCCCC-------CCCC--------CCCCCCCCCC
Q psy8713          95 PNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEH-------HVNG--------TRPSCDASKG  139 (309)
Q Consensus        95 ~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~-------~~~g--------~~~~C~~~~~  139 (309)
                         |+|+||||||.|||||                    ..|++++.+|..       +...        ..+.+.+..+
T Consensus       110 ---g~vtpVkdQg~CGSCWAFs~~~alE~~~~i~~g~~~~LSeq~lvdC~~~~~gC~GG~~~~a~~yi~~~~Gi~~e~~y  186 (314)
T 1by8_A          110 ---GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAY  186 (314)
T ss_dssp             ---TCSCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHTTCTTSCGGGCCCSHHHHHHHHHTTCBCBTTTS
T ss_pred             ---CCCCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhcCCCCCCcCCCHHHHHHHHHHcCCcCcHhhC
Confidence               8999999999999999                    445566666643       2100        1233444445


Q ss_pred             CCcccccccccCccccccccccceeee-eeecc-hHHHHHHHHHhcCCEEEEEecc-cccccCCCceEeCCCCcchhhhh
Q psy8713         140 HTPKCVRECQENYDVPYKKDLNFGAKS-YSVSS-NEKSIMKEIYEHGPVEGAFTVF-DDLILYKSGRFFVPGNETTAMSL  216 (309)
Q Consensus       140 ~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~v~~-~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~sGiy~~~~~~~~~~~~  216 (309)
                      |+......|......     ..+.+.. +.++. ++++||++|+++|||+|+|+++ ++|+.|++|||..|         
T Consensus       187 PY~~~~~~C~~~~~~-----~~~~i~~~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~---------  252 (314)
T 1by8_A          187 PYVGQEESCMYNPTG-----KAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDE---------  252 (314)
T ss_dssp             CCCSSCCCCCCCGGG-----CCBCCSCEEECCSSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEECBCCT---------
T ss_pred             CCCCCCCCcCCCCcc-----ceeEECcEEEecCCCHHHHHHHHHHcCCEEEEEEeChHHhhhccCceecCC---------
Confidence            655444556422111     1122223 35654 8999999999999999999998 68999999999842         


Q ss_pred             hhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEccC-Ccc
Q psy8713         217 IKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DEC  295 (309)
Q Consensus       217 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g~-n~c  295 (309)
                                                 .|+...++|||+|||||++  ++++|||||||||++|||+|||||+|+. |.|
T Consensus       253 ---------------------------~c~~~~~~HaV~iVGyg~~--~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~C  303 (314)
T 1by8_A          253 ---------------------------SCNSDNLNHAVLAVGYGIQ--KGNKHWIIKNSWGENWGNKGYILMARNKNNAC  303 (314)
T ss_dssp             ---------------------------TCCSSCCCEEEEEEEEEEE--TTEEEEEEECSBTTTSTBTTEEEECCSSSCGG
T ss_pred             ---------------------------CCCCCCCCeEEEEEEEecc--CCceEEEEEcCCCCCcCcCCEEEEEcCCCCcC
Confidence                                       3666668999999999998  8899999999999999999999999995 999


Q ss_pred             ccCcceEEEe
Q psy8713         296 GIESSITAGV  305 (309)
Q Consensus       296 gi~~~~~~~~  305 (309)
                      ||++.+++++
T Consensus       304 gI~~~~~~p~  313 (314)
T 1by8_A          304 GIANLASFPK  313 (314)
T ss_dssp             GTTSSCEEEC
T ss_pred             CccCeeEEee
Confidence            9999988764

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=100.00  E-value=1.6e-50  Score=379.13  Aligned_cols=239  Identities=19%  Similarity=0.339  Sum_probs=171.9

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHHHHH-HhC-CCCCCCCCCCCCCcccccCCCCCCCCCceecCCCC
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKS-WMG-VHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKW   94 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~-~lg-~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~   94 (309)
                      ++....++|.+||.....+-.+|++|+|+|+|++.|||++ ++| .....  +.........  ....+||++||||++ 
T Consensus        27 iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf~~~~~g~~~~~~--~~~~~~~~~~--~~~~~lP~~~DwR~~-  101 (310)
T 2o6x_A           27 IWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRAS--DILSHGVPYE--ANNRAVPDKIDWRES-  101 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSEEECCCTTTTSCHHHHHHHHCCCCCCGG--GGSCSSEECC--C----CCSCEEGGGG-
T ss_pred             HHHHHHHHHHHHHhhhccCCCcEEEeccccCCCCHHHHHHHhcCCCCCcc--cccccCCccc--cccCCCCCeEecCcC-
Confidence            5677888999999865443468999999999999999885 555 33211  1100111111  112369999999999 


Q ss_pred             CCCCCCccccCccCCCCCc--------------------CCCccccCCCC---------CCCCC-------CCCCCCCCC
Q psy8713          95 PNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCE---------HHVNG-------TRPSCDASK  138 (309)
Q Consensus        95 ~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~---------~~~~g-------~~~~C~~~~  138 (309)
                         |+|+||||||.|||||                    ..|++++.+|.         ++...       ..+.+.+..
T Consensus       102 ---g~vtpVkdQg~CGSCWAfa~~~alE~~~~i~~g~~~~LS~q~lvdC~~~~~~~gC~GG~~~~a~~yi~~~Gi~~e~~  178 (310)
T 2o6x_A          102 ---GYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQFGLETESS  178 (310)
T ss_dssp             ---TCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSSCCCBCHHHHHHHCGGGTCCGGGCCCHHHHHHHHTTSCBCBTTT
T ss_pred             ---CCCCCcccCCCCCccHHHHhHHHHHHHHHHHhCCCcCcCHHHHHHhhhccCCCCCCCCCHHHHHHHHHHCCcCchhc
Confidence               8999999999999999                    34455555554         32100       122333444


Q ss_pred             CCCcccccccccCccccccccccceeee-eeec-chHHHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhh
Q psy8713         139 GHTPKCVRECQENYDVPYKKDLNFGAKS-YSVS-SNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSL  216 (309)
Q Consensus       139 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~v~-~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~  216 (309)
                      +|+......|.....     ...+.+.. +.++ .++++||++|+++|||+|+|.++++|+.|++|||..          
T Consensus       179 yPY~~~~~~C~~~~~-----~~~~~i~~~~~v~~~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~Gvy~~----------  243 (310)
T 2o6x_A          179 YPYTAVEGQCRYNKQ-----LGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGIYQS----------  243 (310)
T ss_dssp             SCCCSSCCCCCCCGG-----GCCEEEEEEEEECSCCHHHHHHHHHHHCCEEEEECCCHHHHTEEEEEECC----------
T ss_pred             CCCCCCCCCccCCCC-----CCceEeCeEEEeCCCCHHHHHHHHHhcCCeEEEEecchhhhhCCCceecC----------
Confidence            555544445642211     11223333 3565 389999999999999999999988999999999984          


Q ss_pred             hhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEccC-Ccc
Q psy8713         217 IKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DEC  295 (309)
Q Consensus       217 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g~-n~c  295 (309)
                                                ..|+...++|||+|||||++  ++++|||||||||++|||+|||||+|+. |.|
T Consensus       244 --------------------------~~c~~~~~~HaV~iVGyg~~--~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~C  295 (310)
T 2o6x_A          244 --------------------------QTCSPLRVNHAVLAVGYGTQ--GGTDYWIVKNSWGLSWGERGYIRMVRNRGNMC  295 (310)
T ss_dssp             --------------------------SSCCTTCCCEEEEEEEEEEE--TTEEEEEEECSBCTTSTBTTEEEEECSSSSGG
T ss_pred             --------------------------CCCCCCCCCEEEEEEEEecc--CCceEEEEEeCCCCccCCCcEEEEEcCCCCcC
Confidence                                      24665567999999999998  7899999999999999999999999998 899


Q ss_pred             ccCcceEEEee
Q psy8713         296 GIESSITAGVP  306 (309)
Q Consensus       296 gi~~~~~~~~~  306 (309)
                      ||++.+++++.
T Consensus       296 gi~~~~~~p~~  306 (310)
T 2o6x_A          296 GIASLASLPMV  306 (310)
T ss_dssp             GTTTSEEEEEE
T ss_pred             CccceeeEEEe
Confidence            99999887653

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=100.00  E-value=3.4e-50  Score=377.69  Aligned_cols=237  Identities=20%  Similarity=0.367  Sum_probs=170.3

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHHHHH-HhCCCCCCCCCCCCCCcccccCCCCCCCCCceecCCCCC
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKS-WMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWP   95 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~   95 (309)
                      ++....++|.+||...+.+-.+|++|+|+|+|++.|||++ ++|.++..  +... ..... .....+||++||||++  
T Consensus        35 iF~~N~~~I~~~N~~~~~g~~s~~~g~N~FaDlt~eEf~~~~~g~~~~~--~~~~-~~~~~-~~~~~~lP~~~DwR~~--  108 (315)
T 2c0y_A           35 IWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVMSLMSSLRVPS--QWQR-NITYK-SNPNRILPDSVDWREK--  108 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSEEECCCGGGGCCHHHHHHHTTSBCCCC--GGGS-CBCC-------CCCSCEETTTT--
T ss_pred             HHHHHHHHHHHHhhcccccCcceEeccCccccCCHHHHHHHhcCCCCCc--cccC-Ccccc-CcccCCCCCeEecCCC--
Confidence            4677888999999865444579999999999999988855 55654322  1100 01111 1123479999999999  


Q ss_pred             CCCCCccccCccCCCCCc--------------------CCCccccCCCC----------CCCCC--------CCCCCCCC
Q psy8713          96 NCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCE----------HHVNG--------TRPSCDAS  137 (309)
Q Consensus        96 ~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~----------~~~~g--------~~~~C~~~  137 (309)
                        |+|+||||||.|||||                    ..|++++.+|.          ++...        ..+.+.+.
T Consensus       109 --g~vtpVkdQg~CGSCWAfs~~~alE~~~~i~~g~~~~LSeq~lvdC~~~~~~~~gC~GG~~~~a~~yi~~~~Gi~~e~  186 (315)
T 2c0y_A          109 --GCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDA  186 (315)
T ss_dssp             --TCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCGGGCBCHHHHHHHHHHHTCEEBTT
T ss_pred             --CCcCCCcCcccCCCcHHHHHHHHHHHHHHHHhCCCcCcCHHHHHhhcccccCCCCCCCCCHHHHHHHHHHhCCcCchh
Confidence              8999999999999999                    34555555554          22100        01223333


Q ss_pred             CCCCcccccccccCccccccccccceeee-eeecc-hHHHHHHHHHhcCCEEEEEecc-cccccCCCceEeCCCCcchhh
Q psy8713         138 KGHTPKCVRECQENYDVPYKKDLNFGAKS-YSVSS-NEKSIMKEIYEHGPVEGAFTVF-DDLILYKSGRFFVPGNETTAM  214 (309)
Q Consensus       138 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~v~~-~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~sGiy~~~~~~~~~~  214 (309)
                      .+|+......|......     ..+.+.. +.++. ++++||++|+++|||+|+|+++ ++|+.|++|||..|       
T Consensus       187 ~yPY~~~~~~C~~~~~~-----~~~~i~~~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~-------  254 (315)
T 2c0y_A          187 SYPYKAMDQKCQYDSKY-----RAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEP-------  254 (315)
T ss_dssp             TSCCCSSCCCCCCCGGG-----EEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTEEEEEECCT-------
T ss_pred             cCCCccCCCCcccCCcc-----cccccCCeEEeCCCCHHHHHHHHHHcCCEEEEEecCchhhhccCCCcccCC-------
Confidence            45554444456422110     1122223 35654 8899999999999999999998 68999999999842       


Q ss_pred             hhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEccC-C
Q psy8713         215 SLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-D  293 (309)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g~-n  293 (309)
                                                   .|+. .++|||+|||||++  ++++|||||||||++|||+|||||+|+. |
T Consensus       255 -----------------------------~c~~-~~~HaV~iVGyg~~--~g~~yWivkNSWG~~WGe~GY~~i~r~~~n  302 (315)
T 2c0y_A          255 -----------------------------SCTQ-NVNHGVLVVGYGDL--NGKEYWLVKNSWGHNFGEEGYIRMARNKGN  302 (315)
T ss_dssp             -----------------------------TCCS-CCCEEEEEEEEEEE--TTEEEEEEECSBCTTSTBTTEEEEECSSSS
T ss_pred             -----------------------------CCCC-cCCEEEEEEEEeec--CCCcEEEEEcCCCCCcCCCcEEEEEcCCCC
Confidence                                         3665 67999999999998  8899999999999999999999999995 9


Q ss_pred             ccccCcceEEEe
Q psy8713         294 ECGIESSITAGV  305 (309)
Q Consensus       294 ~cgi~~~~~~~~  305 (309)
                      .|||++.+++++
T Consensus       303 ~CgI~~~~~~p~  314 (315)
T 2c0y_A          303 HCGIASFPSYPE  314 (315)
T ss_dssp             GGGTTTSCEEEE
T ss_pred             ccCcCceeEEee
Confidence            999999988764

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=100.00  E-value=6.8e-50  Score=375.78  Aligned_cols=238  Identities=20%  Similarity=0.403  Sum_probs=171.8

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHHHHH-HhCCCCCCCCCCCCCCcccccCCCCCCCCCceecCCCCC
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKS-WMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWP   95 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~   95 (309)
                      ++....++|.+||...+.+-.+|++|+|+|+|++.|||++ ++|.++..  +.  ...... .....+||++||||++  
T Consensus        34 iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf~~~~~g~~~~~--~~--~~~~~~-~~~~~~lP~~~DwR~~--  106 (316)
T 1cs8_A           34 VWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRK--PR--KGKVFQ-EPLFYEAPRSVDWREK--  106 (316)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHCCBCCCC--CS--CCEECC-CCTTCCCCSCEEGGGG--
T ss_pred             HHHHHHHHHHHhhhccccCCcceEEccCccCCCCHHHHHHHhcCCCCCc--cc--cCcccc-CccccCCCCcEecCCC--
Confidence            4677788999999765444469999999999999988875 55554322  11  111111 1224579999999999  


Q ss_pred             CCCCCccccCccCCCCCc--------------------CCCccccCCCC---------CCCCC--------CCCCCCCCC
Q psy8713          96 NCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCE---------HHVNG--------TRPSCDASK  138 (309)
Q Consensus        96 ~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~---------~~~~g--------~~~~C~~~~  138 (309)
                        |+|+||||||.|||||                    ..|++++.+|.         ++...        ..+.+.+..
T Consensus       107 --g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~lvdC~~~~g~~gC~GG~~~~a~~yi~~~~Gi~~e~~  184 (316)
T 1cs8_A          107 --GYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEES  184 (316)
T ss_dssp             --TCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCBCHHHHHHHHHHHTCEEBTTT
T ss_pred             --CCcCCCCcccCCccHHHHHHHHHHHHHHHHHcCCCcCcCHHHHHHhccccCCCCCCCCCHHHHHHHHHHhCCcCchhc
Confidence              8999999999999999                    34555555554         22100        112233334


Q ss_pred             CCCcccccccccCccccccccccceee-eeeecchHHHHHHHHHhcCCEEEEEecc-cccccCCCceEeCCCCcchhhhh
Q psy8713         139 GHTPKCVRECQENYDVPYKKDLNFGAK-SYSVSSNEKSIMKEIYEHGPVEGAFTVF-DDLILYKSGRFFVPGNETTAMSL  216 (309)
Q Consensus       139 ~~~~~~~~~c~~~~~~~~~~~~~~~~~-~~~v~~~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~sGiy~~~~~~~~~~~~  216 (309)
                      +|+......|......     ..+.+. .+.++.++++||++|+++|||+|+|.++ ++|+.|++|||..|         
T Consensus       185 yPY~~~~~~C~~~~~~-----~~~~i~~~~~v~~~~~~ik~~l~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~---------  250 (316)
T 1cs8_A          185 YPYEATEESCKYNPKY-----SVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEP---------  250 (316)
T ss_dssp             SCCCSSCCCCCCCGGG-----EEECCCCEEECCSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECCT---------
T ss_pred             cCCCCCCCCcCCCCcc-----ceeEeccEEEeCCCHHHHHHHHHhcCCEEEEEecCChhhccccCceECCC---------
Confidence            5554444556422110     112222 3356668999999999999999999997 58999999999842         


Q ss_pred             hhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEee---ccCCCCccEEEEEcCCCCCCCCCceEEEEccC-
Q psy8713         217 IKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWG---EDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-  292 (309)
Q Consensus       217 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg---~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g~-  292 (309)
                                                 .|+...++|||+|||||   ++ .++++|||||||||++|||+|||||+|+. 
T Consensus       251 ---------------------------~c~~~~~~HaV~iVGygd~~~~-~~g~~yWivkNSWG~~WGe~GY~~i~r~~~  302 (316)
T 1cs8_A          251 ---------------------------DCSSEDMDHGVLVVGYGFESTE-SDNNKYWLVKNSWGEEWGMGGYVKMAKDRR  302 (316)
T ss_dssp             ---------------------------TCCSSCCCEEEEEEEEEEECCS-SCCEEEEEEECSBCTTSTBTTEEEEECSSS
T ss_pred             ---------------------------CCCCCCCCEEEEEEEecCCccc-CCCCcEEEEEcCCCCCcccCCEEEEECCCC
Confidence                                       36666689999999999   44 26889999999999999999999999997 


Q ss_pred             CccccCcceEEEe
Q psy8713         293 DECGIESSITAGV  305 (309)
Q Consensus       293 n~cgi~~~~~~~~  305 (309)
                      |.|||++.+++++
T Consensus       303 n~CgI~~~~~~p~  315 (316)
T 1cs8_A          303 NHCGIASAASYPT  315 (316)
T ss_dssp             SGGGTTTSCEEEC
T ss_pred             CccCccceeeEee
Confidence            8999999988764

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=100.00  E-value=2.3e-49  Score=377.32  Aligned_cols=232  Identities=24%  Similarity=0.380  Sum_probs=159.3

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHHHHHH-hCCCCCCCCCCCCCCcccccCCCCCCCCCceecCCCCC
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSW-MGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWP   95 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~   95 (309)
                      +|....++|.+||..    ..+|++|+|+|+|++.|||+++ +|..+... ................+||++||||++  
T Consensus        89 iF~~Nl~~I~~~N~~----~~sy~~g~N~FaDlT~eEf~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lP~s~DWR~~--  161 (363)
T 3tnx_A           89 IFKDNLKYIDETNKK----NNSYWLGLNVFADMSNDEFKEKYTGSIAGNY-TTTELSYEEVLNDGDVNIPEYVDWRQK--  161 (363)
T ss_dssp             HHHHHHHHHHHHTTS----CCSEEECSCTTTTSCHHHHHHHHSCSSCSCC-CCSSSSSSCCCCCSCCCCCSCEEGGGG--
T ss_pred             HHHHHHHHHHHHHcC----CCCeEEeccccccCCHHHHHHHhcccccccc-cccccccccccCcccCCCCcceecccC--
Confidence            466778899999853    3699999999999988888765 45443321 111111111122335689999999999  


Q ss_pred             CCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCC--------------CCCCCCCCCCCC
Q psy8713          96 NCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNG--------------TRPSCDASKGHT  141 (309)
Q Consensus        96 ~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g--------------~~~~C~~~~~~~  141 (309)
                        |+|+||||||.|||||                    ..|+|++.+|.....|              ..+.+.+..+|+
T Consensus       162 --g~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~LSeQ~LvdC~~~~~GC~GG~~~~a~~yi~~~Gi~~e~~yPY  239 (363)
T 3tnx_A          162 --GAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPY  239 (363)
T ss_dssp             --TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHTCBCBTTTSCC
T ss_pred             --CCCCCCccCCcCCchhhhhhcccHHHHHHHHcCCCCCcCHHHHhcccCCCCCCCCCChHHHHhHHHhcCccccccCCC
Confidence              9999999999999999                    4456666666542211              111222333555


Q ss_pred             cccccccccCccccccccccceee-eeeecchHHHHHHHHHhcCCEEEEEecc-cccccCCCceEeCCCCcchhhhhhhh
Q psy8713         142 PKCVRECQENYDVPYKKDLNFGAK-SYSVSSNEKSIMKEIYEHGPVEGAFTVF-DDLILYKSGRFFVPGNETTAMSLIKW  219 (309)
Q Consensus       142 ~~~~~~c~~~~~~~~~~~~~~~~~-~~~v~~~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~sGiy~~~~~~~~~~~~~~~  219 (309)
                      ..+...|......+    ...... ...+++..+.+++++..+|||+|++++. ++|++|++|||.              
T Consensus       240 ~~~~~~c~~~~~~~----~~~~~~~~~~~~~~~e~~l~~~v~~gPvsvai~a~~~~F~~Y~sGVy~--------------  301 (363)
T 3tnx_A          240 EGVQRYCRSREKGP----YAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFV--------------  301 (363)
T ss_dssp             CSSCCCCCGGGGCS----CSBCCCEEEEECSSCHHHHHHHHTTSCEEEEECCCSHHHHTEEEEEEC--------------
T ss_pred             cCcCCCcccCCCCC----ceeeccceEEcchhhHHHHHHHHHcCCcEEEEEecchhhhCCCCCEEC--------------
Confidence            55544443211111    111222 2244444444445555679999999874 789999999998              


Q ss_pred             hhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEccCC----cc
Q psy8713         220 TIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD----EC  295 (309)
Q Consensus       220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g~n----~c  295 (309)
                                             ..|+.. .||||+|||||++      |||||||||++|||+|||||+||.|    .|
T Consensus       302 -----------------------~~~~~~-lnHaV~iVGyG~~------YWIVKNSWGt~WGe~GY~rI~Rg~~~~~~~C  351 (363)
T 3tnx_A          302 -----------------------GPCGNK-VDHAVAAVGYGPN------YILIRNSWGTGWGENGYIRIKRGTGNSYGVC  351 (363)
T ss_dssp             -----------------------CCCCSC-CCEEEEEEEEETT------EEEEECSBCTTSTBTTEEEEECCSCCSSCGG
T ss_pred             -----------------------CCCCCC-CCeEEEEEEcCCC------cEEEEeCCCCccccCcEEEEEcCCCCCCCcC
Confidence                                   346554 5999999999975      9999999999999999999999874    59


Q ss_pred             ccCcceEEEe
Q psy8713         296 GIESSITAGV  305 (309)
Q Consensus       296 gi~~~~~~~~  305 (309)
                      ||++.+++++
T Consensus       352 GI~~~a~yPi  361 (363)
T 3tnx_A          352 GLYTSSFYPV  361 (363)
T ss_dssp             GTTSCEEEEE
T ss_pred             Cccceeeecc
Confidence            9999998876

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*

Probab=100.00  E-value=5.2e-49  Score=359.20  Aligned_cols=186  Identities=51%  Similarity=1.065  Sum_probs=146.2

Q ss_pred             CCCCceecCCCCCCCCCCccccCccCCCCCc----------------------CCCccccCC--------CCCCC-----
Q psy8713          83 DLPANFDSRTKWPNCPTIREIRDQGSCGSCW----------------------GCRPYEIAP--------CEHHV-----  127 (309)
Q Consensus        83 ~lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW----------------------~cs~~~~~~--------C~~~~-----  127 (309)
                      +||++||||++||+|++|+||||||.|||||                      ..|++++.+        |.++.     
T Consensus         2 ~lP~s~D~R~~~~~~~~vtpVkdQg~CGSCWAFaa~~ale~~~~i~~~~~~~~~LSeQ~lvdC~~~~~~GC~GG~~~~a~   81 (254)
T 3qsd_A            2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGLGCEGGILGPAW   81 (254)
T ss_dssp             CCCSCEEHHHHCTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTCCCCCBCHHHHHHHCTTSBCTTBCBCHHHHH
T ss_pred             CCCCcCccccccCCCCccCCCCCcccCccHHHHHHHHHHHHHHHHHhCCCccccCCHHHHHhhhcCCCCCCCCCCHHHHH
Confidence            6899999999999999999999999999999                      234444444        33331     


Q ss_pred             -----CC--------CCCCCCCCC-------------------CCCcccccccccCccccccccccceeeeeeecchHHH
Q psy8713         128 -----NG--------TRPSCDASK-------------------GHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKS  175 (309)
Q Consensus       128 -----~g--------~~~~C~~~~-------------------~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~~~~  175 (309)
                           +|        ....|.++.                   .+.+.|...|...+...+..+..+....|.++.++++
T Consensus        82 ~yi~~~Gi~~e~~y~~~~~c~PY~~~~c~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (254)
T 3qsd_A           82 DYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKA  161 (254)
T ss_dssp             HHHHHTCBCBCCCTTTCCSSSCCSSCCCBCSSCSSSCBCCSCCCCCCCCCCCCCTTCCSCGGGGCBCCSEEEECCSCHHH
T ss_pred             HHHHHcCCCcccccccCcCcCCcccccccccccCcCCCCcccccCCccccccccCCccceeeeeeeeeeeeEecCCcHHH
Confidence                 00        001122221                   1122344555555555556666666666777779999


Q ss_pred             HHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEE
Q psy8713         176 IMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIR  255 (309)
Q Consensus       176 ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~  255 (309)
                      ||++|+++|||+++|.++++|+.|++|||..                                     .+....++|||+
T Consensus       162 i~~~l~~~gPv~~~~~~~~~f~~y~~Gi~~~-------------------------------------~~~~~~~~Hav~  204 (254)
T 3qsd_A          162 IQKEIMKYGPVEAGFTVYEDFLNYKSGIYKH-------------------------------------ITGETLGGHAIR  204 (254)
T ss_dssp             HHHHHHHHCCEEEEEEEEGGGGGCCSSEECC-------------------------------------CSSCEEEEEEEE
T ss_pred             HHHHHHHcCCEEEEEEeccccccccCCeecc-------------------------------------CCCCCCCCeEEE
Confidence            9999999999999999999999999999983                                     344556799999


Q ss_pred             EEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEccCCccccCcceEEEeec
Q psy8713         256 ILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGVPK  307 (309)
Q Consensus       256 iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g~n~cgi~~~~~~~~~~  307 (309)
                      |||||++  ++++|||||||||++|||+|||||+|+.|+|||++.+++++|.
T Consensus       205 iVGyg~~--~g~~ywivkNSWG~~WG~~Gy~~i~rg~n~CgI~~~~~~~~p~  254 (254)
T 3qsd_A          205 IIGWGVE--NKAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVTAGRIN  254 (254)
T ss_dssp             EEEEEEE--TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSSEEEEECC
T ss_pred             EEEEeec--CCeeEEEEEeCCCCCcccCCeEEEEcCCCeecCCCceEeeccC
Confidence            9999998  8899999999999999999999999999999999999999984

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...

Probab=100.00  E-value=7e-49  Score=360.66  Aligned_cols=190  Identities=56%  Similarity=1.123  Sum_probs=146.2

Q ss_pred             CCCCCCceecCCCCCCCCCCccccCccCCCCCc----------------------CCCccccC---------CCCCCC--
Q psy8713          81 DEDLPANFDSRTKWPNCPTIREIRDQGSCGSCW----------------------GCRPYEIA---------PCEHHV--  127 (309)
Q Consensus        81 ~~~lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW----------------------~cs~~~~~---------~C~~~~--  127 (309)
                      ..+||++||||++||+|+.|+||||||.|||||                      ..|++++.         .|.++.  
T Consensus         4 ~~~lP~~~D~R~~w~~~~~vt~VkdQg~CGSCWAfa~~~ale~~~~i~~~~~~~~~LS~q~lvdC~~~~~~~gC~GG~~~   83 (266)
T 3cbj_A            4 DLKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPA   83 (266)
T ss_dssp             CCCCCSCEEHHHHSTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHCGGGGBCTTBCBCHH
T ss_pred             CCCCCccCcchhccCCCCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHhCCCCccccCHHHHHhhccccCCCCCCCCCHH
Confidence            457999999999999999999999999999999                      23344444         444331  


Q ss_pred             --------CC-CC-------CCCCCCCC------------------CCcccccccccCccccccccccceeeeeeecchH
Q psy8713         128 --------NG-TR-------PSCDASKG------------------HTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE  173 (309)
Q Consensus       128 --------~g-~~-------~~C~~~~~------------------~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~~  173 (309)
                              +| ..       ..|.++..                  +.+.|...|..++...+..+..+....|.++.++
T Consensus        84 ~a~~y~~~~Gi~~~~~Y~~~e~~~PY~~~~~~~~~~~~~~~C~~~~~~p~c~~~c~~~~~~~~~~~~~~~~~~~~v~~~~  163 (266)
T 3cbj_A           84 EAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE  163 (266)
T ss_dssp             HHHHHHHHTCBCBCCSTTCCCSSSCCCSCCCSCCCSCSSCCCCSCCCCCCCCCSCCTTCCSCTGGGCBCBSCCEECCSCH
T ss_pred             HHHHHHHHhCcCcCccccccccccCcccccccccccCCCCCCccccCCCccccccCCCCcceeeeeeeeeeeeEEeCCCH
Confidence                    01 00       12222210                  0112223343333334445555555567777789


Q ss_pred             HHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCce
Q psy8713         174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHA  253 (309)
Q Consensus       174 ~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ha  253 (309)
                      ++||++|+++|||+++|.++++|+.|++|||.                                     ..|+...++||
T Consensus       164 ~~i~~~i~~~GPV~v~i~~~~~f~~Y~~Gvy~-------------------------------------~~~~~~~~~Ha  206 (266)
T 3cbj_A          164 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQ-------------------------------------HVTGEMMGGHA  206 (266)
T ss_dssp             HHHHHHHHHHCCEEEEEEEEGGGGGCCSSEEC-------------------------------------CCSSCEEEEEE
T ss_pred             HHHHHHHHhcCCEEEEEEeccchhhcCCeEEe-------------------------------------cCCCCccCCeE
Confidence            99999999999999999999899999999998                                     33555567999


Q ss_pred             EEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEccCCccccCcceEEEeecCC
Q psy8713         254 IRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGVPKLD  309 (309)
Q Consensus       254 V~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g~n~cgi~~~~~~~~~~~~  309 (309)
                      |+|||||++  ++++|||||||||++|||+|||||+|+.|.|||++.+++++|++|
T Consensus       207 V~iVGyg~~--~g~~yWivkNSWG~~WGe~Gy~~i~rg~n~cgI~~~~~~~~p~~~  260 (266)
T 3cbj_A          207 IRILGWGVE--NGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD  260 (266)
T ss_dssp             EEEEEEEEE--TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECCBCCC
T ss_pred             EEEEEeccc--CCceEEEEEcCCCCccCCCCEEEEEcCCCcccccCceEEEEeecc
Confidence            999999998  889999999999999999999999999999999999999999986

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=100.00  E-value=5.6e-49  Score=383.42  Aligned_cols=245  Identities=28%  Similarity=0.483  Sum_probs=136.1

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccc-cccCCCCcHHHHHHHhCCCCCCCCCCC-CCCcccccCCCCCCCCCceecCCCC
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAE-KNSLSNIPRAHLKSWMGVHPDYNLPAN-RLPELIGYSEVDEDLPANFDSRTKW   94 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g-~Nf~~~~~~e~~~~~lg~~~~~~~~~~-~~~~~~~~~~~~~~lP~~~DwR~~~   94 (309)
                      ++....++|.+||..   + .+|+++ +|+|+|++.|||+++++...... +.. ..+..........+||++||||++ 
T Consensus       143 if~~N~~~I~~~N~~---~-~~~~~~~~n~faDlT~eEf~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lP~s~DwR~~-  216 (441)
T 3pdf_A          143 LYKYDHNFVKAINAI---Q-KSWTATTYMEYETLTLGDMIRRSGGHSRKI-PRPKPAPLTAEIQQKILFLPTSWDWRNV-  216 (441)
T ss_dssp             --------------------------------------------------------------------CCCSCEETTCB-
T ss_pred             HHHHHHHHHHHHHcc---C-CceEeecccccccCCHHHHHHHhCCCcccc-cccccCccccccccccccCCCCEECCcC-
Confidence            455677788888854   2 589998 79999999999888776532211 110 001101111224679999999997 


Q ss_pred             CCCCCCccccCccCCCCCc----------------------CCCccccCCCCCCCCCCCCCCCCCC--------------
Q psy8713          95 PNCPTIREIRDQGSCGSCW----------------------GCRPYEIAPCEHHVNGTRPSCDASK--------------  138 (309)
Q Consensus        95 ~~cg~vtpVkdQg~CGSCW----------------------~cs~~~~~~C~~~~~g~~~~C~~~~--------------  138 (309)
                      +++++|+||||||.|||||                      ..|++++.+|...    ...|.++.              
T Consensus       217 ~g~~~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~~~LSeQ~LvdC~~~----~~GC~GG~~~~aa~~yi~~~Gi  292 (441)
T 3pdf_A          217 HGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQY----AQGCEGGFPYLIAGKYAQDFGL  292 (441)
T ss_dssp             TTBCCSCCCCBCTTSBCHHHHHHHHHHHHHHHHHHTTSCCCCBCHHHHHHHCTT----SCTTBCCCHHHHTTHHHHHTCB
T ss_pred             CCCCccCcccccCCCchHHHHHHHHHHHHHHHHhccCCCccccCHHHHHhhccC----CCCCCCCchhHHHHHHHHhcCC
Confidence            2345899999999999999                      2566666677532    22354443              


Q ss_pred             -----CCCcccccccccCccccccccccceeeee-ee-----cchHHHHHHHHHhcCCEEEEEecccccccCCCceEeCC
Q psy8713         139 -----GHTPKCVRECQENYDVPYKKDLNFGAKSY-SV-----SSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVP  207 (309)
Q Consensus       139 -----~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v-----~~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~  207 (309)
                           +|+......|.....     ...+.+..| .+     ..++++||++|+++|||+|+|+++++|++|++|||..+
T Consensus       293 ~tE~~yPY~~~~~~C~~~~~-----~~~~~~~~y~~v~~~~~~~~e~~ik~al~~~GPVsvai~a~~~F~~Y~sGVy~~~  367 (441)
T 3pdf_A          293 VEEACFPYTGTDSPCKMKED-----CFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT  367 (441)
T ss_dssp             CBGGGSCCCSSCCCSCCCSS-----CCCBCEEEEEETTSSTTCCCHHHHHHHHHHHCCEEEEECCCGGGGGCCSSEECCC
T ss_pred             CcHHHeeecccCCCCCCccc-----cceeeeccEEEeCCccCCCcHHHHHHHHHHCCCeEEEEEecccccccCCceEecC
Confidence                 343333334432110     111112222 22     24789999999999999999999999999999999854


Q ss_pred             CCcchhhhhhhhhhcccCcccCcCCcceeccccccccCC-CccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceE
Q psy8713         208 GNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSG-KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLF  286 (309)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~  286 (309)
                      .+.                                ..+. ...++|||+|||||++..+|++|||||||||++|||+|||
T Consensus       368 ~~~--------------------------------~~~~~~~~~~HaV~iVGyG~~~~~G~~YWIVkNSWG~~WGe~GYf  415 (441)
T 3pdf_A          368 GLR--------------------------------DPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYF  415 (441)
T ss_dssp             -----------------------------------CCCCCCCCCCEEEEEEEEEECTTTCCEEEEEECSBCTTSTBTTEE
T ss_pred             CCC--------------------------------cccCCCCcCCeEEEEEEecccCCCCceEEEEEcCCCCCcCCCeEE
Confidence            210                                0111 2457999999999986447899999999999999999999


Q ss_pred             EEEccCCccccCcceEEEeecC
Q psy8713         287 KILRGKDECGIESSITAGVPKL  308 (309)
Q Consensus       287 ~i~~g~n~cgi~~~~~~~~~~~  308 (309)
                      ||+||.|+|||++.++++.|.+
T Consensus       416 ri~rg~n~CGI~s~~~a~~P~~  437 (441)
T 3pdf_A          416 RIRRGTDECAIESIAVAATPIP  437 (441)
T ss_dssp             EEECSSCGGGTTSCCEEEEECC
T ss_pred             EEEcCCCccCCCCceEEeeccC
Confidence            9999999999999999999864

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=100.00  E-value=2.1e-48  Score=366.39  Aligned_cols=233  Identities=25%  Similarity=0.368  Sum_probs=167.2

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHHHHHHh-CCCCCCCCCCC-CCCcccccCCCCCCCCCceecCCCC
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSWM-GVHPDYNLPAN-RLPELIGYSEVDEDLPANFDSRTKW   94 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~~l-g~~~~~~~~~~-~~~~~~~~~~~~~~lP~~~DwR~~~   94 (309)
                      ++....++|.+||..   + .+|++|+|+|+|++.|||++++ |.++..  +.. ....... .....+||++||||++ 
T Consensus        45 iF~~N~~~I~~~N~~---~-~~~~~g~N~FaDlt~eEf~~~~~g~~~~~--~~~~~~~~~~~-~~~~~~lP~~~DwR~~-  116 (322)
T 1pci_A           45 IFKDNLNYIDETNKK---N-NSYWLGLNEFADLSNDEFNEKYVGSLIDA--TIEQSYDEEFI-NEDIVNLPENVDWRKK-  116 (322)
T ss_dssp             HHHHHHHHHHHHHTT---C-CSEEECSCTTTTSCHHHHHHHHCCCBCCC--SSCCCCSEECC-CCCCCCSCSCEETTTT-
T ss_pred             HHHHHHHHHHHhhcc---C-CceEEecCccccCCHHHHHHHhcCCCCcc--ccccccccccc-cccccCCCCeEecccC-
Confidence            456677788888864   3 5899999999999988887655 544322  110 0011111 1123579999999999 


Q ss_pred             CCCCCCccccCccCCCCCc--------------------CCCccccCCCCCC---CCC-----------CCCCCCCCCCC
Q psy8713          95 PNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHH---VNG-----------TRPSCDASKGH  140 (309)
Q Consensus        95 ~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~---~~g-----------~~~~C~~~~~~  140 (309)
                         |+|+||||||.|||||                    ..|++++.+|...   .+|           ..+.+.+..+|
T Consensus       117 ---g~vt~VkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~lSeq~lvdC~~~~~gC~GG~~~~a~~yi~~~Gi~~e~~yP  193 (322)
T 1pci_A          117 ---GAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIHLRSKYP  193 (322)
T ss_dssp             ---TCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHSCTTSCGGGCBCHHHHHHHHHHHCBCBTTTSC
T ss_pred             ---CCCCCccccccCCccHHHHHHHHHHHHHHHHcCCccccCHHHHHhhcCCCCCCCCCCHHHHHHHHHHhCCCchhhCC
Confidence               8999999999999999                    4456666666531   111           01133334456


Q ss_pred             CcccccccccCccccccccccceeeee-eecc-hHHHHHHHHHhcCCEEEEEecc-cccccCCCceEeCCCCcchhhhhh
Q psy8713         141 TPKCVRECQENYDVPYKKDLNFGAKSY-SVSS-NEKSIMKEIYEHGPVEGAFTVF-DDLILYKSGRFFVPGNETTAMSLI  217 (309)
Q Consensus       141 ~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~-~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~sGiy~~~~~~~~~~~~~  217 (309)
                      +......|.....    ....+.+..| .++. ++++||++|+. |||+|+|.++ ++|+.|++|||.            
T Consensus       194 Y~~~~~~C~~~~~----~~~~~~i~~~~~v~~~~e~~l~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~------------  256 (322)
T 1pci_A          194 YKAKQGTCRAKQV----GGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFE------------  256 (322)
T ss_dssp             CCSSCCCCTTTTC----CSCCBCCCCEEECCSSBHHHHHHHHHH-SCEEEEECTTCHHHHTEEEEEEC------------
T ss_pred             CCCCCCCCCCCCC----CCceEEEeeEEEeCCCcHHHHHHHHHH-CCEEEEEecccccccccCCeEeC------------
Confidence            6555556653211    0012223333 5554 78899999986 9999999997 789999999998            


Q ss_pred             hhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEccC----C
Q psy8713         218 KWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK----D  293 (309)
Q Consensus       218 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g~----n  293 (309)
                                               ..|+.. .+|||+|||||++  +|++|||||||||++|||+|||||+|+.    |
T Consensus       257 -------------------------~~c~~~-~~HaV~iVGyg~~--~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~n  308 (322)
T 1pci_A          257 -------------------------GPCGTK-VDGAVTAVGYGKS--GGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPG  308 (322)
T ss_dssp             -------------------------CSCCSC-CCEEEEEEEEEEE--TTEEEEEEECSBCSSSTBTTEEEEECCCSBSSC
T ss_pred             -------------------------CCCCCC-CCEEEEEEEEecc--CCccEEEEEeCCCCcccCCeEEEEEcCCCCCCC
Confidence                                     346654 5999999999998  7899999999999999999999999996    8


Q ss_pred             ccccCcceEEEe
Q psy8713         294 ECGIESSITAGV  305 (309)
Q Consensus       294 ~cgi~~~~~~~~  305 (309)
                      .|||++.+++++
T Consensus       309 ~CgI~~~~~yp~  320 (322)
T 1pci_A          309 VCGLYKSSYYPT  320 (322)
T ss_dssp             GGGGGGCCEEEC
T ss_pred             cCCcccceeEEE
Confidence            999999988765

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=100.00  E-value=1.4e-47  Score=359.28  Aligned_cols=225  Identities=22%  Similarity=0.392  Sum_probs=163.6

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHHHHH-HhCCCCCCCCCCCCCCcccccC----CCCCCCCCceecC
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKS-WMGVHPDYNLPANRLPELIGYS----EVDEDLPANFDSR   91 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~-~lg~~~~~~~~~~~~~~~~~~~----~~~~~lP~~~DwR   91 (309)
                      ++....++|.+ |.      +    |+|+|+|++.|||++ ++|.....  +...........    ....+||++||||
T Consensus        31 iF~~N~~~I~~-N~------~----g~N~F~Dlt~eEf~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lP~~~DwR   97 (312)
T 1xkg_A           31 NFLESVKYVQS-NG------G----AINHLSDLSLDEFKNRFLMSAEAF--EHLKTQFDLNAETNACSINGNAPAEIDLR   97 (312)
T ss_dssp             HHHHHHHHHHH-HC------C----CCCTTTTSCHHHHHHHHSBCHHHH--HHHHHHHC-----CBCCCCSCCCSCEETT
T ss_pred             HHHHHHHHHHh-cc------C----CCCcccCCCHHHHHHHhcCCCCcc--ccccCCcccccccccccccccCCCccccc
Confidence            45566667777 31      1    999999999999988 67632111  000000000000    0123799999999


Q ss_pred             CCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCCC-------------
Q psy8713          92 TKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDASK-------------  138 (309)
Q Consensus        92 ~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~~-------------  138 (309)
                      ++    |+|+||||||.|||||                    ..|++++.+|..     ...|.++.             
T Consensus        98 ~~----g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~lvdC~~-----~~GC~GG~~~~a~~yi~~~Gi  168 (312)
T 1xkg_A           98 QM----RTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCAS-----QHGCHGDTIPRGIEYIQHNGV  168 (312)
T ss_dssp             TT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHTC-----SSTTBCCCHHHHHHHHHHHCE
T ss_pred             cC----CCcCCccccCCCCccHHHHHHHHHHHHHHHHhCCCCCcCHHHHHhccC-----CCCCCCCCHHHHHHHHHHcCC
Confidence            99    8999999999999999                    456677777751     02355443             


Q ss_pred             -----CCCcccccccccCccccccccccceeeee-eecc-hHHHHHHHHHh-cCCEEEEEeccc--ccccCCCceEeCCC
Q psy8713         139 -----GHTPKCVRECQENYDVPYKKDLNFGAKSY-SVSS-NEKSIMKEIYE-HGPVEGAFTVFD--DLILYKSGRFFVPG  208 (309)
Q Consensus       139 -----~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~-~~~~ik~~l~~-~GPv~v~~~~~~--~f~~Y~sGiy~~~~  208 (309)
                           +|+......|. ..     ....+.+..| .++. ++++||++|++ +|||+|+|.++.  +|+.|++|||..| 
T Consensus       169 ~~e~~yPY~~~~~~C~-~~-----~~~~~~i~~y~~v~~~~~~~ik~al~~~~GPV~v~i~~~~~~~f~~Y~~GVy~~~-  241 (312)
T 1xkg_A          169 VQESYYRYVAREQSCR-RP-----NAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQR-  241 (312)
T ss_dssp             EBGGGSCCCSSCCCCC-CC-----SSCEECCSEEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBCC-
T ss_pred             CccccCCccCCCCCCC-CC-----CCceEEEeeEEEeCCCCHHHHHHHHHhcCCCEEEEEEecccccccccCCcEEcCC-
Confidence                 35444344554 11     1122333344 5653 89999999999 999999999987  8999999999852 


Q ss_pred             CcchhhhhhhhhhcccCcccCcCCcceeccccccccCC-CccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEE
Q psy8713         209 NETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSG-KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFK  287 (309)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~  287 (309)
                                                         .|+ ... +|||+|||||++  +|++|||||||||++|||+||||
T Consensus       242 -----------------------------------~c~~~~~-~HaV~iVGyg~~--~g~~yWivkNSWG~~WGe~GY~~  283 (312)
T 1xkg_A          242 -----------------------------------DNGYQPN-YHAVNIVGYSNA--QGVDYWIVRNSWDTNWGDNGYGY  283 (312)
T ss_dssp             -----------------------------------CCSSCCE-EEEEEEEEEEEE--TTEEEEEEECSBCTTSTBTTEEE
T ss_pred             -----------------------------------CCCCCcC-ceEEEEEEEecc--CCceEEEEEeCCCCcccCCcEEE
Confidence                                               365 446 999999999998  88999999999999999999999


Q ss_pred             EEccCCccccCcceEEEeecC
Q psy8713         288 ILRGKDECGIESSITAGVPKL  308 (309)
Q Consensus       288 i~~g~n~cgi~~~~~~~~~~~  308 (309)
                      |+|+.|.|||++.+++++|..
T Consensus       284 i~r~~n~CgI~~~~~~~~~~~  304 (312)
T 1xkg_A          284 FAANIDLMMIEEYPYVVILGQ  304 (312)
T ss_dssp             EECSSCGGGTTTCCEEEECTT
T ss_pred             EEcCCCcccccceeEEeeccC
Confidence            999999999999999998864

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1

Probab=100.00  E-value=2.3e-45  Score=327.09  Aligned_cols=179  Identities=27%  Similarity=0.554  Sum_probs=135.7

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCC---CC-----------
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHV---NG-----------  129 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~---~g-----------  129 (309)
                      ||++||||++    ++|+||||||.|||||                    ..|++++.+|....   ++           
T Consensus         1 lP~~~DwR~~----~~vt~VkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~i~   76 (214)
T 1m6d_A            1 APPEWDWRSK----GAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIK   76 (214)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBCCCHHHHHHHHH
T ss_pred             CCCcCcCCCC----CCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence            7999999999    9999999999999999                    44556555564310   01           


Q ss_pred             C-CCCCCCCCCCCcccccccccCccccccccccceeeeeeecchHHHHHHHHHhcCCEEEEEecccccccCCCceEeCCC
Q psy8713         130 T-RPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPG  208 (309)
Q Consensus       130 ~-~~~C~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~  208 (309)
                      . .+.+.+..+|+......|.....    +...+....+.++.++++||++|+++|||+++|.++ .|++|++|||..+.
T Consensus        77 ~~~Gi~~e~~yPY~~~~~~C~~~~~----~~~~~i~~~~~i~~~~~~ik~~l~~~GPV~v~i~~~-~f~~Y~~Giy~~~~  151 (214)
T 1m6d_A           77 NLGGLETEDDYSYQGHMQSCQFSAE----KAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAF-GMQFYRHGISRPLR  151 (214)
T ss_dssp             HHTCBCBTTTSCCCSSCCCCCCCGG----GCCBCCSEEEECCSCHHHHHHHHHHHCCEEEEECTH-HHHHCCSSEECCCG
T ss_pred             HhcCcccccCcCcCCCCCcCCCCcc----cceEEecCEEEeChHHHHHHHHHHhCCCEEEEEEec-hhhhcCCceecCCC
Confidence            0 12233334455444445542211    112223334466678999999999999999999997 59999999998421


Q ss_pred             CcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEE
Q psy8713         209 NETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKI  288 (309)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i  288 (309)
                                                        ..|+...++|||+|||||++  ++++|||||||||++|||+|||||
T Consensus       152 ----------------------------------~~c~~~~~~HaV~iVGyg~~--~g~~yWivkNSWG~~WGe~Gy~~i  195 (214)
T 1m6d_A          152 ----------------------------------PLCSPWLIDHAVLLVGYGQR--SDVPFWAIKNSWGTDWGEKGYYYL  195 (214)
T ss_dssp             ----------------------------------GGSCTTCCCEEEEEEEEEEE--TTEEEEEEECSBCTTSTBTTEEEE
T ss_pred             ----------------------------------CcCCCCcCCEEEEEEEEeec--CCcEEEEEEeCCCCCcccCcEEEE
Confidence                                              23666678999999999998  789999999999999999999999


Q ss_pred             EccCCccccCcceEEEeec
Q psy8713         289 LRGKDECGIESSITAGVPK  307 (309)
Q Consensus       289 ~~g~n~cgi~~~~~~~~~~  307 (309)
                      +|+.|.|||++.+++++++
T Consensus       196 ~r~~n~Cgi~~~~~~~~~~  214 (214)
T 1m6d_A          196 HRGSGACGVNTMASSAVVD  214 (214)
T ss_dssp             ESSSCGGGTTTTCEEEECC
T ss_pred             EcCCCccccCceeEEEEeC
Confidence            9999999999999987753

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...

Probab=100.00  E-value=9.6e-45  Score=323.30  Aligned_cols=173  Identities=23%  Similarity=0.511  Sum_probs=130.1

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCC--------------
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNG--------------  129 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g--------------  129 (309)
                      ||++||||++    |+|+||||||.|||||                    ..|++++.+|.....+              
T Consensus         1 lP~~~Dwr~~----g~vtpVkdQg~cGsCWAfa~~~ale~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~   76 (215)
T 3i06_A            1 APAAVDWRAR----GAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIV   76 (215)
T ss_dssp             CCSEEEGGGG----TCCCCCCBCCSSCCHHHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHCSSSCGGGCCCHHHHHHHHH
T ss_pred             CCCcccCCcC----CCCCCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHhccCCCCCCCCCCCHHHHHHHHH
Confidence            7999999999    9999999999999999                    4556666666432110              


Q ss_pred             C--C-CCCCCCCCCCccccc---ccccCcccccccccccee-eeeeecchHHHHHHHHHhcCCEEEEEecccccccCCCc
Q psy8713         130 T--R-PSCDASKGHTPKCVR---ECQENYDVPYKKDLNFGA-KSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSG  202 (309)
Q Consensus       130 ~--~-~~C~~~~~~~~~~~~---~c~~~~~~~~~~~~~~~~-~~~~v~~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sG  202 (309)
                      .  . +.+.+..+|+.....   .|.....     ...+.+ ..+.++.++++||++|+++|||+++|++ ++|+.|++|
T Consensus        77 ~~~~gGi~~e~~yPY~~~~~~~~~C~~~~~-----~~~~~i~~~~~v~~~~~~ik~~l~~~gPV~v~~~~-~~f~~Y~~G  150 (215)
T 3i06_A           77 QENNGAVYTEDSYPYASGEGISPPCTTSGH-----TVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDA-SSWMTYTGG  150 (215)
T ss_dssp             HHSTTEEEC-CCSCCCCTTSCCCCCCCSSC-----CEEEEEEEEEECCSCHHHHHHHHHHHCCEEEEECC-TTGGGCCSS
T ss_pred             HhccccccccCccCCcCCCCCCCccccCCc-----ccceEecceEEeCChHHHHHHHHHHCCCEEEEEEc-hHHhcCCCC
Confidence            0  0 122233344433221   3332111     111222 3346677899999999999999999999 789999999


Q ss_pred             eEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCC
Q psy8713         203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGD  282 (309)
Q Consensus       203 iy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~  282 (309)
                      ||.                                     . |....++|||+|||||++  ++++|||||||||++|||
T Consensus       151 iy~-------------------------------------~-~~~~~~~HaV~iVGyg~~--~g~~yWivkNSWG~~WGe  190 (215)
T 3i06_A          151 VMT-------------------------------------S-CVSEQLDHGVLLVGYNDS--AAVPYWIIKNSWTTQWGE  190 (215)
T ss_dssp             EEC-------------------------------------S-CCCSCCCEEEEEEEEESS--SSSCEEEEECSBCTTSTB
T ss_pred             ccc-------------------------------------C-CCCCccCcEEEEEEEecc--CCcEEEEEECCCCCCccc
Confidence            997                                     2 444456999999999988  789999999999999999


Q ss_pred             CceEEEEccCCccccCcceEEEee
Q psy8713         283 NGLFKILRGKDECGIESSITAGVP  306 (309)
Q Consensus       283 ~Gy~~i~~g~n~cgi~~~~~~~~~  306 (309)
                      +|||||+|+.|+|||++.+++++.
T Consensus       191 ~Gy~~i~rg~n~cgi~~~~~~~~~  214 (215)
T 3i06_A          191 EGYIRIAKGSNQCLVKEEASSAVV  214 (215)
T ss_dssp             TTEEEEESSSCGGGTTSSEEEEEE
T ss_pred             CceEEEecCCCeecCCCceeEEec
Confidence            999999999999999999998764

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...

Probab=100.00  E-value=1.6e-44  Score=321.51  Aligned_cols=171  Identities=25%  Similarity=0.535  Sum_probs=132.9

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCC-------
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDA-------  136 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~-------  136 (309)
                      ||++||||++    ++|+||||||.|||||                    ..|++++.+|...    ...|.+       
T Consensus         1 lP~~~Dwr~~----~~v~pvkdQg~cGsCWAfa~~~~~e~~~~~~~~~~~~lS~q~l~dc~~~----~~gC~GG~~~~a~   72 (215)
T 3kwz_A            1 APDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE----NDGCGGGYMTNAF   72 (215)
T ss_dssp             CTTCEETTTT----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTT----SCTTBCCCHHHHH
T ss_pred             CCCCCccCcC----CCCCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcCC----CCCCCCCCHHHHH
Confidence            7999999999    8999999999999999                    4566666666531    223443       


Q ss_pred             ------------CCCCCcccccccccCccccccccccceeee-eeecc-hHHHHHHHHHhcCCEEEEEecc-cccccCCC
Q psy8713         137 ------------SKGHTPKCVRECQENYDVPYKKDLNFGAKS-YSVSS-NEKSIMKEIYEHGPVEGAFTVF-DDLILYKS  201 (309)
Q Consensus       137 ------------~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~v~~-~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~s  201 (309)
                                  ..+|+......|......     ..+.+.. +.++. ++++||++|+++|||+++|.++ ++|+.|++
T Consensus        73 ~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~-----~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~  147 (215)
T 3kwz_A           73 QYVQKNRGIDSEDAYPYVGQEESCMYNPTG-----KAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSK  147 (215)
T ss_dssp             HHHHHHTCEEBTTTSCCCSSCCCCCCCGGG-----EEECCCCEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCS
T ss_pred             HHHHHhCCccccccCCCccCCCccccCCCC-----ceeEecceEEeCCCCHHHHHHHHHHCCCEEEEEeechhhhhcccC
Confidence                        334554444455421111     1122222 34554 7899999999999999999997 68999999


Q ss_pred             ceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCC
Q psy8713         202 GRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWG  281 (309)
Q Consensus       202 Giy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG  281 (309)
                      |||..+                                    .|+...++|||+|||||++  ++.+|||||||||++||
T Consensus       148 Giy~~~------------------------------------~~~~~~~~HaV~iVGyg~~--~g~~yWivkNSWG~~WG  189 (215)
T 3kwz_A          148 GVYYDE------------------------------------SCNSDNLNHAVLAVGYGIQ--KGNKHWIIKNSWGENWG  189 (215)
T ss_dssp             SEECCT------------------------------------TCCTTCCCEEEEEEEEEEE--TTEEEEEEECSBCTTST
T ss_pred             CeECCC------------------------------------CCCCChhhCEEEEEEEecc--CCceEEEEECCcCcccc
Confidence            999853                                    3555668999999999998  78999999999999999


Q ss_pred             CCceEEEEccC-CccccCcceEEEe
Q psy8713         282 DNGLFKILRGK-DECGIESSITAGV  305 (309)
Q Consensus       282 ~~Gy~~i~~g~-n~cgi~~~~~~~~  305 (309)
                      |+|||||+|+. |+|||++.+++++
T Consensus       190 ~~Gy~~i~r~~~n~Cgi~~~~~~p~  214 (215)
T 3kwz_A          190 NKGYILMARNKNNACGIANLASFPK  214 (215)
T ss_dssp             BTTEEEEESSSSSGGGTTSSCEEEC
T ss_pred             cCCEEEEecCCCCccCcCCceeeee
Confidence            99999999998 8999999888764

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*

Probab=100.00  E-value=9.1e-45  Score=324.23  Aligned_cols=175  Identities=28%  Similarity=0.599  Sum_probs=134.2

Q ss_pred             CCCceecCCCCCCCC-CCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCC------
Q psy8713          84 LPANFDSRTKWPNCP-TIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDA------  136 (309)
Q Consensus        84 lP~~~DwR~~~~~cg-~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~------  136 (309)
                      ||++||||++    + +|+||||||.|||||                    ..|++++.+|....  ....|.+      
T Consensus         1 lP~~~DwR~~----~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dc~~~~--~~~gC~GG~~~~a   74 (220)
T 8pch_A            1 YPPSMDWRKK----GNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF--NNHGCQGGLPSQA   74 (220)
T ss_dssp             CCSCEEHHHH----SSCSCCCCBCTTSCCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHGGGG--TCCGGGCCCHHHH
T ss_pred             CCCCEecCcC----CCcCCcccccCCCchHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhhCcCcc--CCCCCCCCCHHHH
Confidence            7999999999    7 799999999999999                    45566665664310  1122333      


Q ss_pred             -------------CCCCCcccccccccCccccccccccceee-eeeec-chHHHHHHHHHhcCCEEEEEecccccccCCC
Q psy8713         137 -------------SKGHTPKCVRECQENYDVPYKKDLNFGAK-SYSVS-SNEKSIMKEIYEHGPVEGAFTVFDDLILYKS  201 (309)
Q Consensus       137 -------------~~~~~~~~~~~c~~~~~~~~~~~~~~~~~-~~~v~-~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~s  201 (309)
                                   ..+|+......|.....     ...+.+. .+.++ .++++||++|+++|||+++|.++++|+.|++
T Consensus        75 ~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~-----~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~Y~~  149 (220)
T 8pch_A           75 FEYIRYNKGIMGEDTYPYKGQDDHCKFQPD-----KAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRK  149 (220)
T ss_dssp             HHHHHHHTCEEBTTTSCCCSSCCCCCCCGG-----GEEECEEEEEECCTTCHHHHHHHHHHTCCEEEEECCCHHHHTCCS
T ss_pred             HHHHHHcCCcCcccccCccCCCCCCCCCCC-----cceEEeCCEEEeCCCCHHHHHHHHHhcCCEEEEEEeccchhhcCC
Confidence                         33454443444532111     1112222 23454 3789999999999999999999989999999


Q ss_pred             ceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCC--ccCCceEEEEEeeccCCCCccEEEEEcCCCCC
Q psy8713         202 GRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGK--ALGGHAIRILGWGEDEKSKEKYWLIANSWNTD  279 (309)
Q Consensus       202 Giy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~  279 (309)
                      |||..+                                    .|..  ..++|||+|||||++  ++++|||||||||++
T Consensus       150 Giy~~~------------------------------------~~~~~~~~~~HaV~iVGyg~~--~g~~yWivkNSWG~~  191 (220)
T 8pch_A          150 GIYSST------------------------------------SCHKTPDKVNHAVLAVGYGEE--NGIPYWIVKNSWGPQ  191 (220)
T ss_dssp             SEECCS------------------------------------SCCCSTTTCCEEEEEEEEEEE--TTEEEEEEECSBCTT
T ss_pred             CcccCC------------------------------------cCCCCCCcCCcEEEEEEEEcc--CCeeEEEEECCCCcC
Confidence            999853                                    2333  257999999999998  789999999999999


Q ss_pred             CCCCceEEEEccCCccccCcceEEEeec
Q psy8713         280 WGDNGLFKILRGKDECGIESSITAGVPK  307 (309)
Q Consensus       280 WG~~Gy~~i~~g~n~cgi~~~~~~~~~~  307 (309)
                      |||+|||||+|+.|+|||++.+++++|.
T Consensus       192 WGe~Gy~~i~r~~n~cgi~~~~~~~~p~  219 (220)
T 8pch_A          192 WGMNGYFLIERGKNMCGLAACASYPIPL  219 (220)
T ss_dssp             STBTTEEEEECSSCGGGTTTSCEEEEEC
T ss_pred             cccCCEEEEEcCCCccccCCCceeEeec
Confidence            9999999999999999999999999996

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...

Probab=100.00  E-value=5.3e-44  Score=319.50  Aligned_cols=175  Identities=26%  Similarity=0.588  Sum_probs=132.2

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCC------
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDAS------  137 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~------  137 (309)
                      ||++||||++    ++|+||||||.|||||                    ..|++++.+|....  ....|.++      
T Consensus         1 lP~~~DwR~~----~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~--g~~gC~GG~~~~a~   74 (220)
T 2xu3_A            1 APRSVDWREK----GYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ--GNEGCNGGLMDYAF   74 (220)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTT--TCCTTBCCCHHHHH
T ss_pred             CCCcEeCCCC----CCCCCCcccCcccHHHHHHhHHHHHHHHHHhcCCceecCHHHHHhhccCC--CCCCCCCCCHHHHH
Confidence            7999999999    8999999999999999                    44566666665310  12234443      


Q ss_pred             -------------CCCCcccccccccCccccccccccceeee-eeecchHHHHHHHHHhcCCEEEEEecc-cccccCCCc
Q psy8713         138 -------------KGHTPKCVRECQENYDVPYKKDLNFGAKS-YSVSSNEKSIMKEIYEHGPVEGAFTVF-DDLILYKSG  202 (309)
Q Consensus       138 -------------~~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~v~~~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~sG  202 (309)
                                   .+|+......|.....     ...+.+.. +.++.++++||++|+++|||+++|.++ ++|+.|++|
T Consensus        75 ~y~~~~~Gi~~e~~yPY~~~~~~C~~~~~-----~~~~~i~~~~~v~~~~~~ik~~l~~~GPV~v~~~~~~~~f~~Y~~G  149 (220)
T 2xu3_A           75 QYVQDNGGLDSEESYPYEATEESCKYNPK-----YSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEG  149 (220)
T ss_dssp             HHHHHHTCEEBTTTSCCCSSCCCCCCCGG-----GEEECCSEEEECCSCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSS
T ss_pred             HHHHHhCCcccccccCCcccCcCccCCCC-----CcceeeeeEEEeCCCHHHHHHHHHhcCCEEEEEeecCcccccccce
Confidence                         3444444444542211     11222223 355558899999999999999999998 589999999


Q ss_pred             eEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccC--CCCccEEEEEcCCCCCC
Q psy8713         203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDE--KSKEKYWLIANSWNTDW  280 (309)
Q Consensus       203 iy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~--~~g~~YWiikNSWG~~W  280 (309)
                      ||..|                                    .|+...++|||+|||||++.  .++++|||||||||++|
T Consensus       150 vy~~~------------------------------------~c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~W  193 (220)
T 2xu3_A          150 IYFEP------------------------------------DCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEW  193 (220)
T ss_dssp             EECCT------------------------------------TCCSSCCCEEEEEEEEEECCCSSSCCEEEEEECSBCTTS
T ss_pred             EEcCC------------------------------------CCCCCCCCeEEEEEEcCCccccCCCCcEEEEEeCCCCCc
Confidence            99842                                    36666689999999999421  16889999999999999


Q ss_pred             CCCceEEEEccC-CccccCcceEEEe
Q psy8713         281 GDNGLFKILRGK-DECGIESSITAGV  305 (309)
Q Consensus       281 G~~Gy~~i~~g~-n~cgi~~~~~~~~  305 (309)
                      ||+|||||+|+. |.|||++.+++++
T Consensus       194 G~~Gy~~i~~~~~n~Cgi~~~~~~p~  219 (220)
T 2xu3_A          194 GMGGYVKMAKDRRNHCGIASAASYPT  219 (220)
T ss_dssp             TBTTEEEEECSSSSGGGTTTSCEEEE
T ss_pred             ccCcEEEEecCCCCcCCccccceeee
Confidence            999999999997 8999999988765

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...

Probab=100.00  E-value=1.4e-43  Score=316.07  Aligned_cols=173  Identities=25%  Similarity=0.581  Sum_probs=131.4

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCC-------
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDA-------  136 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~-------  136 (309)
                      ||++||||++    ++|+||||||.|||||                    ..|++++.+|..... ....|.+       
T Consensus         2 lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~-~~~gC~GG~~~~a~   76 (218)
T 3ovx_A            2 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKY-GNKGCNGGFMTTAF   76 (218)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGG-TCCGGGCCCHHHHH
T ss_pred             CCCCCCcccC----CCCCCCccCCCCccHHHHHHHHHHHHHHHHHcCCccccCHHHheeccCCcC-CCCCCCCCCHHHHH
Confidence            7999999999    8999999999999999                    455666666651100 1222333       


Q ss_pred             ------------CCCCCcccccccccCccccccccccceeeee-eecc-hHHHHHHHHHhcCCEEEEEecc-cccccCCC
Q psy8713         137 ------------SKGHTPKCVRECQENYDVPYKKDLNFGAKSY-SVSS-NEKSIMKEIYEHGPVEGAFTVF-DDLILYKS  201 (309)
Q Consensus       137 ------------~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~-~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~s  201 (309)
                                  ..+|+......|......     ..+.+..| .++. ++++||++|+++|||+++|++. ++|+.|++
T Consensus        77 ~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~-----~~~~i~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~  151 (218)
T 3ovx_A           77 QYIIDNKGIDSDASYPYKAMDQKCQYDSKY-----RAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRS  151 (218)
T ss_dssp             HHHHHHTCEEBTTTSCCCSSCCCCCCCGGG-----EEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHHCCS
T ss_pred             HHHHHhCCcCcccccCccCCCCcccCCCcc-----ceeeeccEEEeCCCCHHHHHHHHHhcCCEEEEEEecchhhhcccC
Confidence                        334554444455422111     11222223 4443 7889999999999999999997 58999999


Q ss_pred             ceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCC
Q psy8713         202 GRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWG  281 (309)
Q Consensus       202 Giy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG  281 (309)
                      |||..+                                    .| ...++|||+|||||++  ++++|||||||||++||
T Consensus       152 Giy~~~------------------------------------~~-~~~~~HaV~iVGyg~~--~g~~ywivkNSWG~~WG  192 (218)
T 3ovx_A          152 GVYYEP------------------------------------SC-TQNVNHGVLVVGYGDL--NGKEYWLVKNSWGHNFG  192 (218)
T ss_dssp             SEECCT------------------------------------TC-CSCCCEEEEEEEEEEE--TTEEEEEEECSBCTTST
T ss_pred             ceecCC------------------------------------CC-CcccCcEEEEEEEecc--CCceEEEEECCCCCccc
Confidence            999853                                    34 4457999999999998  78999999999999999


Q ss_pred             CCceEEEEccC-CccccCcceEEEe
Q psy8713         282 DNGLFKILRGK-DECGIESSITAGV  305 (309)
Q Consensus       282 ~~Gy~~i~~g~-n~cgi~~~~~~~~  305 (309)
                      |+|||||+|+. |.|||++.+++++
T Consensus       193 ~~Gy~~i~~~~~n~cgi~~~~~~p~  217 (218)
T 3ovx_A          193 EEGYIRMARNKGNHCGIASFPSYPE  217 (218)
T ss_dssp             BTTEEEEECSSSSGGGTTTSCEEEE
T ss_pred             cCCEEEEecCCCCcccccCceeeee
Confidence            99999999998 9999999988765

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*

Probab=100.00  E-value=5.6e-43  Score=318.03  Aligned_cols=176  Identities=21%  Similarity=0.411  Sum_probs=133.0

Q ss_pred             CCCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCC-------CCCCC------
Q psy8713          83 DLPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCE-------HHVNG------  129 (309)
Q Consensus        83 ~lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~-------~~~~g------  129 (309)
                      +||++||||++    ++|+||||||.|||||                    ..|++++.+|.       ++...      
T Consensus         1 ~lP~~~DwR~~----g~vtpVkdQg~CGsCWAfa~~~~lE~~~~i~~g~~~~LS~q~lvdC~~~~~gC~GG~~~~a~~y~   76 (246)
T 2b1m_A            1 DAPESWDWSKK----GVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDESEGCYNGWHYQSFEWV   76 (246)
T ss_dssp             -CCSCEEGGGT----TCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSBTTTBCCHHHHHHHH
T ss_pred             CCCCcCCCCCC----CCCCCcccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhcCCCCCCCCCCHHHHHHHH
Confidence            48999999999    8999999999999999                    34555555554       32100      


Q ss_pred             -CC-CCCCCCCCCCcccccccccCccccccccccceeee----eeecc-hHHHHHHHHHh---cCCEEEEEecccccccC
Q psy8713         130 -TR-PSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKS----YSVSS-NEKSIMKEIYE---HGPVEGAFTVFDDLILY  199 (309)
Q Consensus       130 -~~-~~C~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~----~~v~~-~~~~ik~~l~~---~GPv~v~~~~~~~f~~Y  199 (309)
                       .. +.+.+..+|+......|.....     ...+.+..    +.++. ++++||++|++   +|||+++|.+ ++|+.|
T Consensus        77 ~~~~Gi~~e~~yPY~~~~~~C~~~~~-----~~~~~i~~y~~~~~v~~~~~~~ik~~l~~~~~~GPV~v~i~~-~~f~~Y  150 (246)
T 2b1m_A           77 VKHGGIASEADYPYKARDGKCKANEI-----QDKVTIDNYGVQILSNESTESEAESSLQSFVLEQPISVSIDA-KDFHFY  150 (246)
T ss_dssp             HHTTCBCBTTTSCCCSSCCCCCGGGC-----CCCBCCSEEEEEECCTTSCHHHHHHHHHHHHHHSCEEEEECC-TTGGGC
T ss_pred             HHhCCcCccccccccCCCCcCcCCCC-----CCceeEcCcceeeecCCChHHHHHHHHHhhccCCCEEEEEEc-chhhcc
Confidence             11 3344444565544455643211     11222333    34553 78899999999   6999999999 899999


Q ss_pred             CCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCcc-CCceEEEEEeeccCCCCccEEEEEcCCCC
Q psy8713         200 KSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKAL-GGHAIRILGWGEDEKSKEKYWLIANSWNT  278 (309)
Q Consensus       200 ~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~HaV~iVGyg~~~~~g~~YWiikNSWG~  278 (309)
                      ++|||..+                                    .|+... ++|||+|||||++  ++++|||||||||+
T Consensus       151 ~~Giy~~~------------------------------------~c~~~~~~~HaV~iVGyg~~--~g~~yWivkNSWG~  192 (246)
T 2b1m_A          151 SGGIYDGG------------------------------------NCSSPYGINHFVLIVGYGSE--DGVDYWIAKNSWGE  192 (246)
T ss_dssp             CSSEECCT------------------------------------TCCSSCCCCEEEEEEEEEEE--TTEEEEEEECSBCT
T ss_pred             cceeecCC------------------------------------CCCCCCcCceEEEEEEEecc--CCceEEEEEeCCCC
Confidence            99999842                                    465553 7999999999998  78999999999999


Q ss_pred             CCCCCceEEEEccC----CccccCcceEEEee
Q psy8713         279 DWGDNGLFKILRGK----DECGIESSITAGVP  306 (309)
Q Consensus       279 ~WG~~Gy~~i~~g~----n~cgi~~~~~~~~~  306 (309)
                      +|||+|||||+|+.    |.|||++.+++++.
T Consensus       193 ~WGe~Gy~~i~~~~~~~~n~CgI~~~~~~p~~  224 (246)
T 2b1m_A          193 DWGIDGYIRIQRNTGNLLGVCGMNYFASYPII  224 (246)
T ss_dssp             TSTBTTEEEEECCSSCTTCGGGTTSEEEEEEC
T ss_pred             cccCCcEEEEEcCCCCCCccccccceeeEEEe
Confidence            99999999999997    89999999887764

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*

Probab=100.00  E-value=7.1e-43  Score=311.48  Aligned_cols=169  Identities=31%  Similarity=0.549  Sum_probs=129.8

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCC-------
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDA-------  136 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~-------  136 (309)
                      ||++||||++    +.|+||||||.|||||                    ..|++++.+|...    ...|.+       
T Consensus         1 lP~~~DwR~~----~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~----~~gC~GG~~~~a~   72 (216)
T 1ppo_A            1 LPENVDWRKK----GAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR----SHGCKGGYPPYAL   72 (216)
T ss_dssp             CCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSS----SCTTBCCCHHHHH
T ss_pred             CCCcCcCCCC----CCCCCCccCCcCccHHHHHHHHHHHHHHHHccCCceecCHHHHHhccCC----CCCCCCCCHHHHH
Confidence            7999999999    8999999999999999                    4556666666531    122433       


Q ss_pred             -----------CCCCCcccccccccCccccccccccceeeee-eecc-hHHHHHHHHHhcCCEEEEEecc-cccccCCCc
Q psy8713         137 -----------SKGHTPKCVRECQENYDVPYKKDLNFGAKSY-SVSS-NEKSIMKEIYEHGPVEGAFTVF-DDLILYKSG  202 (309)
Q Consensus       137 -----------~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~-~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~sG  202 (309)
                                 ..+|+......|.....    ....+.+..| .++. ++++||++|++ |||+++|.++ ++|+.|++|
T Consensus        73 ~yi~~~Gi~~e~~yPY~~~~~~C~~~~~----~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~~~~~~~~f~~Y~~G  147 (216)
T 1ppo_A           73 EYVAKNGIHLRSKYPYKAKQGTCRAKQV----GGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGG  147 (216)
T ss_dssp             HHHHHHCBCBTTTSCCCSSCCCCCGGGC----CSCCBCCCEEEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHHCCSS
T ss_pred             HHHHHhCcCccccCCccCCCCCcCCCCC----CCceEEeccEEEECCCCHHHHHHHHHh-CCEEEEEecCChhhhhcCCc
Confidence                       33454443444542211    1123344444 4554 78899999986 9999999996 789999999


Q ss_pred             eEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCC
Q psy8713         203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGD  282 (309)
Q Consensus       203 iy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~  282 (309)
                      ||.                                     ..|+.. .+|||+|||||++  ++++|||||||||++|||
T Consensus       148 iy~-------------------------------------~~~~~~-~~HaV~iVGyg~~--~g~~ywivkNSWG~~WG~  187 (216)
T 1ppo_A          148 IFE-------------------------------------GPCGTK-VDHAVTAVGYGKS--GGKGYILIKNSWGTAWGE  187 (216)
T ss_dssp             EEC-------------------------------------CSCCSC-CCEEEEEEEEEEE--TTEEEEEEECSBCSSSTB
T ss_pred             eEC-------------------------------------CCCCCC-CCEEEEEEEeecc--CCccEEEEEeCCCCCccc
Confidence            998                                     346554 5999999999998  789999999999999999


Q ss_pred             CceEEEEccC----CccccCcceEEEe
Q psy8713         283 NGLFKILRGK----DECGIESSITAGV  305 (309)
Q Consensus       283 ~Gy~~i~~g~----n~cgi~~~~~~~~  305 (309)
                      +|||||+|+.    |.|||++.+++++
T Consensus       188 ~Gy~~i~~~~~~~~n~Cgi~~~~~~p~  214 (216)
T 1ppo_A          188 KGYIRIKRAPGNSPGVCGLYKSSYYPT  214 (216)
T ss_dssp             TTEEEEECCCSSSSCGGGTTSCCEEEE
T ss_pred             CcEEEEEcCCCCCCCcCccccceeeEe
Confidence            9999999985    8999999988765

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0

Probab=100.00  E-value=5.3e-43  Score=313.48  Aligned_cols=174  Identities=25%  Similarity=0.545  Sum_probs=131.2

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCC---CC-----------
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHV---NG-----------  129 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~---~g-----------  129 (309)
                      ||++||||++    ++|+||||||.|||||                    ..|++++.+|....   .|           
T Consensus         1 lP~~~DwR~~----~~vtpVkdQg~cGSCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~   76 (222)
T 3u8e_A            1 APASIDWRKK----GAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXXXXXGGDADDAFRWVI   76 (222)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCCSCSSCTTTTHHHHHHHHHHHHHSCCCCBCHHHHHHHCC------CCCHHHHHHHHH
T ss_pred             CCCcCcCCcC----CCCCCcccCCCCccHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhccCcccccCCCCHHHHHHHHH
Confidence            7999999999    8999999999999999                    44555555554310   01           


Q ss_pred             CC-CCCCCCCCCCcccccccccCccccccccccceeeee-eecchHHHHHHHHHhcCCEEEEEeccc-ccccCCC-ceEe
Q psy8713         130 TR-PSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSY-SVSSNEKSIMKEIYEHGPVEGAFTVFD-DLILYKS-GRFF  205 (309)
Q Consensus       130 ~~-~~C~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~~~~~ik~~l~~~GPv~v~~~~~~-~f~~Y~s-Giy~  205 (309)
                      .. +.+.+..+|+......|.....      ..+.+..| .++.++++||++| ++|||+++|.++. +|+.|++ |||.
T Consensus        77 ~~~Gi~~e~~yPY~~~~~~C~~~~~------~~~~i~~~~~v~~~~~~i~~~l-~~GPV~v~i~~~~~~f~~Y~~~Giy~  149 (222)
T 3u8e_A           77 TNGGIASDANYPYTGVDGTCDLNKP------IAARIDGYTNVPNSSSALLDAV-AKQPVSVNIYTSSTSFQLYTGPGIFA  149 (222)
T ss_dssp             HHTCBCBTTTSCCCSSCCCCCCCSC------CCBCCCEEEECCSCHHHHHHHH-HHSCEEEEECCCSHHHHTCCCSSCBC
T ss_pred             HcCCccchhcCCCcccCCccccCCC------CeEEEccEEEeCCcHHHHHHHH-hCCCEEEEEEecChhhhcEeCCceEC
Confidence            11 3344444555544455543221      12333333 5556888999999 5799999999984 8999999 9998


Q ss_pred             CCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCC--ccCCceEEEEEeeccCCC-CccEEEEEcCCCCCCCC
Q psy8713         206 VPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGK--ALGGHAIRILGWGEDEKS-KEKYWLIANSWNTDWGD  282 (309)
Q Consensus       206 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~HaV~iVGyg~~~~~-g~~YWiikNSWG~~WG~  282 (309)
                      .+                                    .|+.  ..++|||+|||||++  . +++|||||||||++|||
T Consensus       150 ~~------------------------------------~~~~~~~~~~HaV~iVGyg~~--~~g~~yWivkNSWG~~WGe  191 (222)
T 3u8e_A          150 GS------------------------------------SCSDDPATVDHTVLIVGYGSN--GTNADYWIVKNSWGTEWGI  191 (222)
T ss_dssp             CT------------------------------------TCCCCGGGCCEEEEEEEEEES--STTCEEEEEECSBCTTSTB
T ss_pred             CC------------------------------------cccCCCCcCCEEEEEEEEeec--CCCCcEEEEECCCCCCccc
Confidence            42                                    3544  357999999999988  5 89999999999999999


Q ss_pred             CceEEEEccCC----ccccCcceEEEee
Q psy8713         283 NGLFKILRGKD----ECGIESSITAGVP  306 (309)
Q Consensus       283 ~Gy~~i~~g~n----~cgi~~~~~~~~~  306 (309)
                      +|||||+|+.|    .|||++.+++++.
T Consensus       192 ~Gy~~i~r~~~~~~g~Cgi~~~~~~p~~  219 (222)
T 3u8e_A          192 DGYILIRRNTNRPDGVCAIDAWGSYPTK  219 (222)
T ss_dssp             TTEEEEECSCSCTTCGGGTTSSCEEEEC
T ss_pred             CCEEEEEcCCCCCCCcCCccccceEEEE
Confidence            99999999987    9999999987653

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1

Probab=100.00  E-value=9.7e-43  Score=311.64  Aligned_cols=174  Identities=27%  Similarity=0.571  Sum_probs=130.6

Q ss_pred             CCCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCC---CCC----------
Q psy8713          83 DLPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHH---VNG----------  129 (309)
Q Consensus        83 ~lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~---~~g----------  129 (309)
                      +||++||||++    +.|+||||||.|||||                    ..|++++.+|...   ..+          
T Consensus         2 ~lP~~~DwR~~----~~v~~VkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~   77 (221)
T 1cqd_A            2 DLPDSIDWREN----GAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTANHGCRGGWMNPAFQFI   77 (221)
T ss_dssp             -CCSCEETTTT----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHH
T ss_pred             CCCCcCcCCCC----CCcCCcccCCCCccHHHHHHHHHHHHHHHHhcCCeeeeccceeEECCCCCCCCCCCCHHHHHHHH
Confidence            58999999999    8999999999999999                    4456665556431   001          


Q ss_pred             -C-CCCCCCCCCCCcccccccccCccccccccccceeeee-eecc-hHHHHHHHHHhcCCEEEEEecc-cccccCCCceE
Q psy8713         130 -T-RPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSY-SVSS-NEKSIMKEIYEHGPVEGAFTVF-DDLILYKSGRF  204 (309)
Q Consensus       130 -~-~~~C~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~-~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~sGiy  204 (309)
                       . .+.+.+..+|+......|.....     ...+.+..| .++. ++++||++|++ |||+++|.++ ++|+.|++|||
T Consensus        78 ~~~~Gi~~e~~yPY~~~~~~C~~~~~-----~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy  151 (221)
T 1cqd_A           78 VNNGGINSEETYPYRGQDGICNSTVN-----APVVSIDSYENVPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIF  151 (221)
T ss_dssp             HHHTSBCBTTTSCCCSSCCCCCSSSC-----CCSBCCSEEEECCSSCHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEE
T ss_pred             HHhCCccccccCCccCCCCCcCCCCC-----CceEEeccEEEeCCchHHHHHHHHHh-CCEEEEEeccCcccccccCccc
Confidence             0 12333334555444445542211     123344444 3554 68899999875 9999999998 78999999999


Q ss_pred             eCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCc
Q psy8713         205 FVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNG  284 (309)
Q Consensus       205 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~G  284 (309)
                      .                                     ..|+. .++|||+|||||++  ++++|||||||||++|||+|
T Consensus       152 ~-------------------------------------~~~~~-~~~HaV~iVGyg~~--~g~~yWivkNSWG~~WGe~G  191 (221)
T 1cqd_A          152 T-------------------------------------GSCNI-SANHALTVVGYGTE--NDKDFWIVKNSWGKNWGESG  191 (221)
T ss_dssp             C-------------------------------------CCCCC-CCCEEEEEEEEEEE--TTEEEEEEECSBCTTSTBTT
T ss_pred             c-------------------------------------CCCCC-cCCeEEEEEEEccc--CCCcEEEEEeCCCCCcccCC
Confidence            8                                     34655 47999999999998  78999999999999999999


Q ss_pred             eEEEEccC----CccccCcceEEEee
Q psy8713         285 LFKILRGK----DECGIESSITAGVP  306 (309)
Q Consensus       285 y~~i~~g~----n~cgi~~~~~~~~~  306 (309)
                      ||||+|+.    |.|||++.+++++.
T Consensus       192 y~~i~r~~~~~~~~Cgi~~~~~~p~~  217 (221)
T 1cqd_A          192 YIRAERNIENPDGKCGITRFASYPVK  217 (221)
T ss_dssp             EEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             EEEEEcCCCCCCcccceeeeeeEEEe
Confidence            99999973    89999999987653

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A

Probab=100.00  E-value=5.5e-43  Score=323.24  Aligned_cols=188  Identities=25%  Similarity=0.491  Sum_probs=135.5

Q ss_pred             CCCCCCceecCCCCCCCCCCccccCcc---CCCCCc-----------------------CCCccccCCCCCC--CCC---
Q psy8713          81 DEDLPANFDSRTKWPNCPTIREIRDQG---SCGSCW-----------------------GCRPYEIAPCEHH--VNG---  129 (309)
Q Consensus        81 ~~~lP~~~DwR~~~~~cg~vtpVkdQg---~CGSCW-----------------------~cs~~~~~~C~~~--~~g---  129 (309)
                      ..+||++||||++. .+++|+||||||   .|||||                       ..|++++.+|...  .+|   
T Consensus        33 ~~~lP~~~DwR~~~-~~~~vtpVkdQg~~~~CGSCWAfa~~~alE~~~~i~~~g~~~~~~LS~Q~lvdC~~~~gC~GG~~  111 (277)
T 1deu_A           33 PADLPKSWDWRNVD-GVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNAGSCEGGND  111 (277)
T ss_dssp             GGGSCSCEETTSBT-TBCCCCCCCBTTCSSCCBCHHHHHHHHHHHHHHHHHTTTCSSCCCBCHHHHHHHSSSEETBEECH
T ss_pred             cccCCCceecccCC-CCCcCCccccCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCcccCHHHHHhCcCCCCCCCCCH
Confidence            45799999999982 235799999999   999999                       2345555566431  000   


Q ss_pred             --------CCCCCCCCCCCCccccccccc-C---------ccccccccccceeeeeeecchHHHHHHHHHhcCCEEEEEe
Q psy8713         130 --------TRPSCDASKGHTPKCVRECQE-N---------YDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFT  191 (309)
Q Consensus       130 --------~~~~C~~~~~~~~~~~~~c~~-~---------~~~~~~~~~~~~~~~~~v~~~~~~ik~~l~~~GPv~v~~~  191 (309)
                              ..+.+.+..+|+......|.. .         ..........+.+..|...+++++||++|+++|||+++|.
T Consensus       112 ~~a~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~~~~c~~~~~~~~~~i~~y~~v~~~~~i~~~i~~~GPV~v~i~  191 (277)
T 1deu_A          112 LSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIM  191 (277)
T ss_dssp             HHHHHHHHHTCBCBGGGSCCCSSCCCCCHHHHSEEEEETTEEEECSSCCCBCEEEEEEECSHHHHHHHHHHHCCEEEEEC
T ss_pred             HHHHHHHHHcCCCcCccCCCcCCCCCccccccccccccCcccccccCcceEEeceeEecCCHHHHHHHHHHcCCEEEEEe
Confidence                    011222222344332233431 0         0001111122344444322468899999999999999999


Q ss_pred             cccccccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEE
Q psy8713         192 VFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWL  271 (309)
Q Consensus       192 ~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWi  271 (309)
                      ++++|+.|++|||..                                     .+....++|||+|||||++  ++++|||
T Consensus       192 ~~~~f~~Y~~GIy~~-------------------------------------~~~~~~~~HaV~iVGyg~~--~g~~YWi  232 (277)
T 1deu_A          192 ATERLANYTGGIYAE-------------------------------------YQDTTYINHVVSVAGWGIS--DGTEYWI  232 (277)
T ss_dssp             CCHHHHTCCSSEECB-------------------------------------CCSCCCCCEEEEEEEEEEE--TTEEEEE
T ss_pred             cccccccCcCcEECC-------------------------------------CCCCCcCCeEEEEEEeccc--CCccEEE
Confidence            998999999999984                                     2334467999999999998  8899999


Q ss_pred             EEcCCCCCCCCCceEEEEccCC--------ccccCcceEEEeecC
Q psy8713         272 IANSWNTDWGDNGLFKILRGKD--------ECGIESSITAGVPKL  308 (309)
Q Consensus       272 ikNSWG~~WG~~Gy~~i~~g~n--------~cgi~~~~~~~~~~~  308 (309)
                      ||||||++|||+|||||+|+.|        .||||+.+++++|++
T Consensus       233 vkNSWG~~WGe~GY~~i~rg~n~~g~g~~~~cgIe~~~~~~~p~~  277 (277)
T 1deu_A          233 VRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGDPIV  277 (277)
T ss_dssp             EECSBCTTSTBTTEEEEECTTHHHHTGGGTBTTTTSCEEEEEECC
T ss_pred             EEeCCCCccCCCcEEEEEcCCCcccccccccceeccccEeecccC
Confidence            9999999999999999999998        999999999999985

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*

Probab=100.00  E-value=1.1e-42  Score=310.55  Aligned_cols=170  Identities=26%  Similarity=0.522  Sum_probs=129.8

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCC-------
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDA-------  136 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~-------  136 (309)
                      ||++||||++    +.|+||||||.|||||                    ..|++++.+|..    ....|.+       
T Consensus         1 lP~~~DwR~~----~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~----~~~gC~GG~~~~a~   72 (218)
T 1yal_A            1 YPQSIDWRAK----GAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDK----HSYGCKGGYQTTSL   72 (218)
T ss_dssp             CCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT----TSCTTBCCCHHHHH
T ss_pred             CCCcCcCCCC----CCCCCCccCccchhHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhcC----CCCCCCCCCHHHHH
Confidence            7999999999    8999999999999999                    445666666652    1122433       


Q ss_pred             -----------CCCCCcccccccccCccccccccccceeeee-eecc-hHHHHHHHHHhcCCEEEEEecc-cccccCCCc
Q psy8713         137 -----------SKGHTPKCVRECQENYDVPYKKDLNFGAKSY-SVSS-NEKSIMKEIYEHGPVEGAFTVF-DDLILYKSG  202 (309)
Q Consensus       137 -----------~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~-~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~sG  202 (309)
                                 ..+|+......|.....    ....+.+..| .++. ++++||++|++ |||+++|.++ ++|+.|++|
T Consensus        73 ~~~~~~Gi~~e~~yPY~~~~~~C~~~~~----~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~G  147 (218)
T 1yal_A           73 QYVANNGVHTSKVYPYQAKQYKCRATDK----PGPKVKITGYKRVPSNCETSFLGALAN-QPLSVLVEAGGKPFQLYKSG  147 (218)
T ss_dssp             HHHHHHCBCBTTTSCCCSSCCCCCGGGC----CSCCBCCSEEEECCSSBHHHHHHHHTT-SCEEEEECCCSHHHHTCCSS
T ss_pred             HHHHHcCCCccccccccCCCCCcccCcC----CCceEEEeeEEEeCCCCHHHHHHHHHh-CCEEEEEeccchhccccCCc
Confidence                       33454443444542211    1122334444 4554 78889999876 9999999996 789999999


Q ss_pred             eEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCC
Q psy8713         203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGD  282 (309)
Q Consensus       203 iy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~  282 (309)
                      ||.                                     ..|+.. .+|||+|||||++  ++++|||||||||++|||
T Consensus       148 iy~-------------------------------------~~~~~~-~~HaV~iVGyg~~--~g~~yWivkNSWG~~WGe  187 (218)
T 1yal_A          148 VFD-------------------------------------GPCGTK-LDHAVTAVGYGTS--DGKNYIIIKNSWGPNWGE  187 (218)
T ss_dssp             EEC-------------------------------------CSCCSC-CCEEEEEEEEEEE--TTEEEEEEECSBCTTSTB
T ss_pred             eEC-------------------------------------CCCCCC-CCEEEEEEEeecc--CCccEEEEEeCCCCCccc
Confidence            998                                     346554 6999999999998  789999999999999999


Q ss_pred             CceEEEEccC----CccccCcceEEEee
Q psy8713         283 NGLFKILRGK----DECGIESSITAGVP  306 (309)
Q Consensus       283 ~Gy~~i~~g~----n~cgi~~~~~~~~~  306 (309)
                      +|||||+|+.    |.|||++.+++++.
T Consensus       188 ~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  215 (218)
T 1yal_A          188 KGYMRLKRQSGNSQGTCGVYKSSYYPFK  215 (218)
T ss_dssp             TTEEEEECCCSBSCCGGGTTSSCEEEEC
T ss_pred             CcEEEEECCCCCCCCccccccceeeEEE
Confidence            9999999985    89999999888763

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1

Probab=100.00  E-value=1e-42  Score=310.35  Aligned_cols=171  Identities=25%  Similarity=0.489  Sum_probs=129.9

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCC-------CCCC-------
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEH-------HVNG-------  129 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~-------~~~g-------  129 (309)
                      ||++||||++    ++|+||||||.|||||                    ..|++++.+|..       +...       
T Consensus         1 lP~~~DwR~~----~~v~~VkdQg~cGsCWAfa~~~~~e~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~   76 (215)
T 1iwd_A            1 LPSFVDWRSK----GAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASHGCNGGWMNNAFQYII   76 (215)
T ss_dssp             CCSCEEGGGG----TCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHH
T ss_pred             CCCcEeCCCC----CCCCCcccCCCCchHHHHHHHHHHHHHHHHhcCCccccChhHeEECcCCCCCCCCCCHHHHHHHHH
Confidence            7999999999    8999999999999999                    345565555542       2100       


Q ss_pred             C-CCCCCCCCCCCcccccccccCccccccccccceeeee-eecc-hHHHHHHHHHhcCCEEEEEeccc-ccccCCCceEe
Q psy8713         130 T-RPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSY-SVSS-NEKSIMKEIYEHGPVEGAFTVFD-DLILYKSGRFF  205 (309)
Q Consensus       130 ~-~~~C~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~-~~~~ik~~l~~~GPv~v~~~~~~-~f~~Y~sGiy~  205 (309)
                      . .+.+.+..+|+......|.....      ..+.+..| .++. ++++||++|.+ |||+++|.+++ +|+.|++|||.
T Consensus        77 ~~~Gi~~e~~yPY~~~~~~C~~~~~------~~~~i~~~~~v~~~~~~~ik~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~  149 (215)
T 1iwd_A           77 TNGGIDTQQNYPYSAVQGSCKPYRL------RVVSINGFQRVTRNNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFT  149 (215)
T ss_dssp             HHTCBCBTTTSCCCSSCCCCCTTCC------CCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC
T ss_pred             HhCCcccccccCccCCCCCCCCCCC------ceEEeCcEEEeCCCcHHHHHHHHHh-CCEEEEEecCCcchhhcCCceEC
Confidence            0 12333444555444445543211      22333344 4544 67889999875 99999999986 79999999998


Q ss_pred             CCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCce
Q psy8713         206 VPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGL  285 (309)
Q Consensus       206 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy  285 (309)
                                                           ..|+. .++|||+|||||++  ++++|||||||||++|||+||
T Consensus       150 -------------------------------------~~c~~-~~~HaV~iVGyg~~--~g~~yWivkNSWG~~WGe~Gy  189 (215)
T 1iwd_A          150 -------------------------------------GPCGT-AQNHGVVIVGYGTQ--SGKNYWIVRNSWGQNWGNQGY  189 (215)
T ss_dssp             -------------------------------------CCCCC-CCCEEEEEEEEEEE--TTEEEEEEECSBCTTSTBTTE
T ss_pred             -------------------------------------CCCCC-cCCEEEEEEEEecc--CCccEEEEEeCCCCCcCCCcE
Confidence                                                 34654 46999999999998  889999999999999999999


Q ss_pred             EEEEccC----CccccCcceEEEe
Q psy8713         286 FKILRGK----DECGIESSITAGV  305 (309)
Q Consensus       286 ~~i~~g~----n~cgi~~~~~~~~  305 (309)
                      |||+|+.    |.|||++.+++++
T Consensus       190 ~~i~~~~~~~~~~Cgi~~~~~~p~  213 (215)
T 1iwd_A          190 IWMERNVASSAGLCGIAQLPSYPT  213 (215)
T ss_dssp             EEEECSCSSTTCGGGTTSSCEEEE
T ss_pred             EEEEcCCCCCCCCCCccccceeee
Confidence            9999987    8999999988765

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A

Probab=100.00  E-value=2.8e-42  Score=312.51  Aligned_cols=176  Identities=27%  Similarity=0.533  Sum_probs=131.4

Q ss_pred             CCCCCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCC-------CCCCC----
Q psy8713          81 DEDLPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCE-------HHVNG----  129 (309)
Q Consensus        81 ~~~lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~-------~~~~g----  129 (309)
                      ..+||++||||++    ++|+||||||.|||||                    ..|++++.+|.       ++...    
T Consensus        15 ~~~lP~~~DwR~~----~~vtpVkdQg~CGsCWAFaa~~alE~~~~i~~~~~~~lSeq~l~dC~~~~~gC~GG~~~~a~~   90 (241)
T 2oul_A           15 ENFDHAAYDWRLH----SGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNGGLINNAFE   90 (241)
T ss_dssp             CCCCSSCEEGGGT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHCTTSCTTBCBCHHHHHH
T ss_pred             cccCCCccccCcC----CCCCCCccCccchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhhcCCCCCCCCCCHHHHHH
Confidence            4568999999999    8999999999999999                    44555555554       32100    


Q ss_pred             ----CCCCCCCCCCCCcccccc-cccCccccccccccceeeee-eecc-hHHHHHHHHHhcCCEEEEEecccccccCCCc
Q psy8713         130 ----TRPSCDASKGHTPKCVRE-CQENYDVPYKKDLNFGAKSY-SVSS-NEKSIMKEIYEHGPVEGAFTVFDDLILYKSG  202 (309)
Q Consensus       130 ----~~~~C~~~~~~~~~~~~~-c~~~~~~~~~~~~~~~~~~~-~v~~-~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sG  202 (309)
                          ..+.+.+..+|+...... |.....     ...+.+..| .++. ++++||++|   |||+++|.++++|+.|++|
T Consensus        91 yi~~~~Gi~~e~~yPY~~~~~~~C~~~~~-----~~~~~i~~~~~v~~~~~~~ik~~l---GPV~v~i~~~~~f~~Y~~G  162 (241)
T 2oul_A           91 DMIELGGICPDGDYPYVSDAPNLCNIDRC-----TEKYGIKNYLSVPDNKLKEALRFL---GPISISVAVSDDFAFYKEG  162 (241)
T ss_dssp             HHHHTTSBCBTTSSCCCTTSCCCCCTTSS-----SCCBCCSEEEECCTTCHHHHHHHT---CCEEEEECBCHHHHTCCSS
T ss_pred             HHHHhCCcCccccCCCcCCCCCcCCCCCC-----ccceeeeeEEEeCCCCHHHHHHhh---CCEEEEEecCcchhhcCCc
Confidence                123444444555443344 542211     122334344 5554 788999999   9999999998899999999


Q ss_pred             eEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccC--------CCCccEEEEEc
Q psy8713         203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDE--------KSKEKYWLIAN  274 (309)
Q Consensus       203 iy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~--------~~g~~YWiikN  274 (309)
                      ||.                                     ..|+.. ++|||+|||||++.        +.+.+||||||
T Consensus       163 iy~-------------------------------------~~c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkN  204 (241)
T 2oul_A          163 IFD-------------------------------------GECGDQ-LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKN  204 (241)
T ss_dssp             BCC-------------------------------------SCBCSS-CCEEEEEEEEEEEEEECTTTCSEEEEEEEEEEC
T ss_pred             EEc-------------------------------------CcCCCC-CCEEEEEEEeccccccccccccCCCCCEEEEEe
Confidence            998                                     346555 79999999999872        02789999999


Q ss_pred             CCCCCCCCCceEEEEccCCc----cccCcceEEEee
Q psy8713         275 SWNTDWGDNGLFKILRGKDE----CGIESSITAGVP  306 (309)
Q Consensus       275 SWG~~WG~~Gy~~i~~g~n~----cgi~~~~~~~~~  306 (309)
                      |||++|||+|||||+|+.|.    |||++.+++++.
T Consensus       205 SWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~~  240 (241)
T 2oul_A          205 SWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLI  240 (241)
T ss_dssp             SBCTTSTBTTEEEEEECSSSCCCGGGTTSSEEEEEC
T ss_pred             CCCCCcccCCEEEEEcCCCCCCCcCCccceEEEEee
Confidence            99999999999999999877    999999988763

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*

Probab=100.00  E-value=3.9e-42  Score=311.94  Aligned_cols=176  Identities=24%  Similarity=0.493  Sum_probs=131.3

Q ss_pred             CCCCCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCC-------CCCCC----
Q psy8713          81 DEDLPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCE-------HHVNG----  129 (309)
Q Consensus        81 ~~~lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~-------~~~~g----  129 (309)
                      ..+||++||||++    ++|+||||||.|||||                    ..|++++.+|.       ++...    
T Consensus        17 ~~~lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~alE~~~~i~~~~~~~lSeq~lvdC~~~~~gC~GG~~~~a~~   92 (243)
T 3bwk_A           17 AKLDRIAYDWRLH----GGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGCYGGYITNAFD   92 (243)
T ss_dssp             CCCCCSCEEGGGT----TCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCSCCCBCHHHHHHHCTTSCGGGCCCHHHHHH
T ss_pred             cccCCCceecCcC----CCCCCCccCCCCchHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhcCCCCCCCCCCHHHHHH
Confidence            4569999999999    8999999999999999                    44555555554       22100    


Q ss_pred             ----CCCCCCCCCCCCcccccc-cccCccccccccccceeeee-eecc-hHHHHHHHHHhcCCEEEEEecccccccCCCc
Q psy8713         130 ----TRPSCDASKGHTPKCVRE-CQENYDVPYKKDLNFGAKSY-SVSS-NEKSIMKEIYEHGPVEGAFTVFDDLILYKSG  202 (309)
Q Consensus       130 ----~~~~C~~~~~~~~~~~~~-c~~~~~~~~~~~~~~~~~~~-~v~~-~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sG  202 (309)
                          ..+.+.+..+|+...... |.....     ...+.+..| .++. ++++||++|   |||+++|.++++|+.|++|
T Consensus        93 y~~~~~Gi~~e~~yPY~~~~~~~C~~~~~-----~~~~~i~~~~~v~~~~~~~ik~~l---GPV~v~i~~~~~f~~Y~~G  164 (243)
T 3bwk_A           93 DMIDLGGLCSQDDYPYVSNLPETCNLKRC-----NERYTIKSYVSIPDDKFKEALRYL---GPISISIAASDDFAFYRGG  164 (243)
T ss_dssp             HHHHTTSBCBTTTSCCCTTSCCCCCGGGC-----SSCBCCCEEEECCTTCHHHHHHHT---CCEEEEECCCHHHHTCCSS
T ss_pred             HHHHhCCcccccccCCcCCCCCcCCCCCC-----ccceeeeeEEEeCCCCHHHHHHhh---CCEEEEEecChhHHhcCCc
Confidence                123444444555443333 542111     122334344 5554 788999999   9999999998899999999


Q ss_pred             eEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccC--------CCCccEEEEEc
Q psy8713         203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDE--------KSKEKYWLIAN  274 (309)
Q Consensus       203 iy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~--------~~g~~YWiikN  274 (309)
                      ||.                                     ..|+.. ++|||+|||||++.        +.+.+||||||
T Consensus       165 iy~-------------------------------------~~c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkN  206 (243)
T 3bwk_A          165 FYD-------------------------------------GECGAA-PNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKN  206 (243)
T ss_dssp             SCC-------------------------------------CCCCSS-CCEEEEEEEEEEEEEECTTTCSEEEEEEEEEEC
T ss_pred             eec-------------------------------------CCCCCc-CCeEEEEEEecCccccccccccCCCCCEEEEEe
Confidence            998                                     346655 79999999999872        02789999999


Q ss_pred             CCCCCCCCCceEEEEccCCc----cccCcceEEEee
Q psy8713         275 SWNTDWGDNGLFKILRGKDE----CGIESSITAGVP  306 (309)
Q Consensus       275 SWG~~WG~~Gy~~i~~g~n~----cgi~~~~~~~~~  306 (309)
                      |||++|||+|||||+|+.|.    |||++.+++++.
T Consensus       207 SWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~~  242 (243)
T 3bwk_A          207 SWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLL  242 (243)
T ss_dssp             SBCTTSTBTTEEEEEECSSSCCCSTTTTSSEEEEEC
T ss_pred             CCCCCcCCCcEEEEEcCCCCCCCcCCccceEEEEec
Confidence            99999999999999999877    999999988763

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1

Probab=100.00  E-value=5e-42  Score=305.33  Aligned_cols=166  Identities=28%  Similarity=0.542  Sum_probs=126.5

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCCC-----
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDASK-----  138 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~~-----  138 (309)
                      ||++||||++    |+|+||||||.|||||                    ..|++++.+|...    ...|.++.     
T Consensus         1 lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~----~~gC~GG~~~~a~   72 (213)
T 3ioq_A            1 IPTSIDWRQK----GAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERR----SYGCRGGFPLYAL   72 (213)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTT----SCTTBCCCHHHHH
T ss_pred             CCCCCCcccC----CCCCCCCcCCCChhHHHHHHHHHHHHHHHHHcCCCcccCHHHhhhhcCC----CCCCCCCCHHHHH
Confidence            7999999999    9999999999999999                    5567777777642    23355543     


Q ss_pred             -------------CCCcccccccccCccccccccccceeee-eeecchHHHHHHHHHhcCCEEEEEecc-cccccCCCce
Q psy8713         139 -------------GHTPKCVRECQENYDVPYKKDLNFGAKS-YSVSSNEKSIMKEIYEHGPVEGAFTVF-DDLILYKSGR  203 (309)
Q Consensus       139 -------------~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~v~~~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~sGi  203 (309)
                                   +|+......|.....    ....+.+.. +.++.++++++++++++|||+++|+++ ++|+.|++||
T Consensus        73 ~~~~~~Gi~~e~~yPY~~~~~~C~~~~~----~~~~~~i~~~~~v~~~~~~~~~~~~~~GPV~v~i~~~~~~f~~y~~Gi  148 (213)
T 3ioq_A           73 QYVANSGIHLRQYYPYEGVQRQCRASQA----KGPKVKTDGVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGI  148 (213)
T ss_dssp             HHHHHHCEEBGGGSCCCSSCCCCCGGGC----CSCEECCCEEEECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSE
T ss_pred             HHHHHcCCCchhccCcCCCCCCCCCCcc----CCceEEeccEEEeCCchHHHHHHHHHhCCEEEEEEechhhhhhccCCe
Confidence                         344443444532111    111222333 356666666777777889999999998 7999999999


Q ss_pred             EeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCC
Q psy8713         204 FFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDN  283 (309)
Q Consensus       204 y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~  283 (309)
                      |.                                     ..|+. .++|||+|||||+      +|||||||||++|||+
T Consensus       149 y~-------------------------------------~~~~~-~~~HaV~iVGyg~------~yWivkNSWG~~WGe~  184 (213)
T 3ioq_A          149 FA-------------------------------------GPCGT-SIDHAVAAVGYGN------DYILIKNSWGTGWGEG  184 (213)
T ss_dssp             EC-------------------------------------CSCCS-CCCEEEEEEEEET------TEEEEECSBCTTSTBT
T ss_pred             Ec-------------------------------------CCCCC-ccCceEEEEecCC------CeEEEECCCCCCcccC
Confidence            98                                     33444 4699999999996      5999999999999999


Q ss_pred             ceEEEEccC----CccccCcceEEEe
Q psy8713         284 GLFKILRGK----DECGIESSITAGV  305 (309)
Q Consensus       284 Gy~~i~~g~----n~cgi~~~~~~~~  305 (309)
                      |||||+|+.    |.|||++.+++++
T Consensus       185 Gy~~i~r~~~~~~~~Cgi~~~~~~p~  210 (213)
T 3ioq_A          185 GYIRIKRGSGNPQGACGVLSDSVFPT  210 (213)
T ss_dssp             TEEEEESSCSSTTCGGGTTSCCEEEE
T ss_pred             CeEEEEcCCCCCCCcccccCcceEeE
Confidence            999999987    8999999988765

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1

Probab=100.00  E-value=4.3e-42  Score=309.04  Aligned_cols=176  Identities=26%  Similarity=0.548  Sum_probs=130.1

Q ss_pred             CCCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCC--------CCCC-----
Q psy8713          83 DLPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEH--------HVNG-----  129 (309)
Q Consensus        83 ~lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~--------~~~g-----  129 (309)
                      +||++||||++    +.|+||||||.|||||                    ..|++++.+|..        +...     
T Consensus         1 ~lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~~gC~GG~~~~a~~y   76 (229)
T 1s4v_A            1 TVPASVDWRKK----GAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEF   76 (229)
T ss_dssp             CCCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSSCCTTBCBCHHHHHHH
T ss_pred             CCCCCEeCCCC----CCCCCCccCccchHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhCCCCCCCCCCCCHHHHHHH
Confidence            48999999999    8999999999999999                    345555555542        2100     


Q ss_pred             --C-CCCCCCCCCCCcccccccccCccccccccccceeeee-eecc-hHHHHHHHHHhcCCEEEEEec-ccccccCCCce
Q psy8713         130 --T-RPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSY-SVSS-NEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGR  203 (309)
Q Consensus       130 --~-~~~C~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~-~~~~ik~~l~~~GPv~v~~~~-~~~f~~Y~sGi  203 (309)
                        . .+.+.+..+|+......|.....    ....+.+..| .++. +++.||++|.+ |||+++|.+ .++|+.|++||
T Consensus        77 ~~~~~Gi~~e~~yPY~~~~~~C~~~~~----~~~~~~i~~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gi  151 (229)
T 1s4v_A           77 IKQRGGITTEANYPYEAYDGTCDVSKE----NAPAVSIDGHENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGV  151 (229)
T ss_dssp             HHHHTCBCBTTTSCCCSSCCCCCHHHH----TCCCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSE
T ss_pred             HHHhCCccccccCCccCCCCCCCCCCC----CCcEEEeeeEEEeCCccHHHHHHHHhc-CCEEEEEEeCcHHHhhCCCcE
Confidence              0 12334444555544455542110    1122333334 4554 67788888875 999999999 57899999999


Q ss_pred             EeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCC
Q psy8713         204 FFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDN  283 (309)
Q Consensus       204 y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~  283 (309)
                      |.                                     ..|+.. .+|||+|||||++. ++++|||||||||++|||+
T Consensus       152 y~-------------------------------------~~c~~~-~~HaV~iVGyg~~~-~g~~yWivkNSWG~~WGe~  192 (229)
T 1s4v_A          152 FT-------------------------------------GSCGTE-LDHGVAIVGYGTTI-DGTKYWTVKNSWGPEWGEK  192 (229)
T ss_dssp             EC-------------------------------------CCCCCC-CCEEEEEEEEEECT-TSCEEEEEECSBCTTSTBT
T ss_pred             EC-------------------------------------CCCCCC-CCeEEEEEEecccc-CCCCEEEEEeCCCCCccCC
Confidence            98                                     346554 59999999999882 3899999999999999999


Q ss_pred             ceEEEEccC----CccccCcceEEEee
Q psy8713         284 GLFKILRGK----DECGIESSITAGVP  306 (309)
Q Consensus       284 Gy~~i~~g~----n~cgi~~~~~~~~~  306 (309)
                      |||||+|+.    |.|||++.+++++.
T Consensus       193 Gy~~i~r~~~~~~~~Cgi~~~~~~p~~  219 (229)
T 1s4v_A          193 GYIRMERGISDKEGLCGIAMEASYPIK  219 (229)
T ss_dssp             TEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             cEEEEEcCCCCCCCcCcccccceeeEe
Confidence            999999985    89999999888764

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...

Probab=100.00  E-value=1.1e-41  Score=302.88  Aligned_cols=169  Identities=31%  Similarity=0.567  Sum_probs=125.7

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCC---CCC-----------
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHH---VNG-----------  129 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~---~~g-----------  129 (309)
                      ||++||||++    +.|+||||||.|||||                    ..|++++.+|...   ..|           
T Consensus         1 lP~~~DwR~~----~~v~pVkdQg~CGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~yi~   76 (212)
T 2cio_A            1 IPEYVDWRQK----GAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVA   76 (212)
T ss_dssp             CCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHH
T ss_pred             CCCcccCCCC----CCCCCCccCCccchHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence            7999999999    8999999999999999                    4455655556421   001           


Q ss_pred             CCCCCCCCCCCCcccccccccCccccccccccceeeee-eecc-hHHHHHHHHHhcCCEEEEEeccc-ccccCCCceEeC
Q psy8713         130 TRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSY-SVSS-NEKSIMKEIYEHGPVEGAFTVFD-DLILYKSGRFFV  206 (309)
Q Consensus       130 ~~~~C~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~-~~~~ik~~l~~~GPv~v~~~~~~-~f~~Y~sGiy~~  206 (309)
                      ..+.+.+..+|+......|.....    ....+.+..| .++. ++++||++|.+ |||+++|.++. +|+.|++|||. 
T Consensus        77 ~~Gi~~e~~yPY~~~~~~C~~~~~----~~~~~~i~~~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~-  150 (212)
T 2cio_A           77 QYGIHYRNTYPYEGVQRYCRSREK----GPYAAKTDGVRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFV-  150 (212)
T ss_dssp             HTCBCBTTTSCCCSSCCCCCTTTT----CSCSBCCSEEEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC-
T ss_pred             HhCcCcccccCCcCCCCCcCCCCC----CCceEEEeeEEEeCCccHHHHHHHHHh-CCEEEEEeccCcchhhcCCceec-
Confidence            112333334555444445543211    1122333334 4554 78889999875 99999999975 89999999998 


Q ss_pred             CCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceE
Q psy8713         207 PGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLF  286 (309)
Q Consensus       207 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~  286 (309)
                                                          ..|+. .++|||+|||||+      +|||||||||++|||+|||
T Consensus       151 ------------------------------------~~~~~-~~~HaV~iVGyg~------~yWivkNSWG~~WGe~Gy~  187 (212)
T 2cio_A          151 ------------------------------------GPCGN-KVDHAVAAVGYGP------NYILIKNSWGTGWGENGYI  187 (212)
T ss_dssp             ------------------------------------CCCCS-CCCEEEEEEEEET------TEEEEECSBCTTSTBTTEE
T ss_pred             ------------------------------------CCCCC-CCCEEEEEEEecC------CeEEEEeCCCCCcccCcEE
Confidence                                                34655 3699999999997      5999999999999999999


Q ss_pred             EEEccC----CccccCcceEEEe
Q psy8713         287 KILRGK----DECGIESSITAGV  305 (309)
Q Consensus       287 ~i~~g~----n~cgi~~~~~~~~  305 (309)
                      ||+|+.    |.|||++.+++++
T Consensus       188 ~i~~~~~~~~~~Cgi~~~~~~p~  210 (212)
T 2cio_A          188 RIKRGTGNSYGVCGLYTSSFYPV  210 (212)
T ss_dssp             EEECSSSCTTCGGGTTSCCEEEE
T ss_pred             EEEcCCCCCCCccCcccceeEEE
Confidence            999986    8999999988765

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*

Probab=100.00  E-value=1.1e-41  Score=302.30  Aligned_cols=166  Identities=27%  Similarity=0.503  Sum_probs=125.1

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCC-------CCCC-------
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEH-------HVNG-------  129 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~-------~~~g-------  129 (309)
                      ||++||||++    ++|+||||||.|||||                    ..|++++.+|..       +...       
T Consensus         1 lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~   76 (208)
T 1o0e_A            1 LPEQIDWRKK----GAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNHGCLGGAFVFAYQYII   76 (208)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHH
T ss_pred             CCCcCcCCCC----CCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCceecCHHHhhhhcCCCCCCCCCCHHHHHHHHH
Confidence            7999999999    8999999999999999                    445565555642       2100       


Q ss_pred             C-CCCCCCCCCCCcccccccccCccccccccccceeeee-eecc-hHHHHHHHHHhcCCEEEEEeccc-ccccCCCceEe
Q psy8713         130 T-RPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSY-SVSS-NEKSIMKEIYEHGPVEGAFTVFD-DLILYKSGRFF  205 (309)
Q Consensus       130 ~-~~~C~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~-~~~~ik~~l~~~GPv~v~~~~~~-~f~~Y~sGiy~  205 (309)
                      . .+.+.+..+|+......|..       ....+.+..| .++. ++++||++|++ |||+++|.+++ +|+.|++|||.
T Consensus        77 ~~~Gi~~e~~yPY~~~~~~C~~-------~~~~~~i~~~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~  148 (208)
T 1o0e_A           77 NNGGIDTQANYPYKAVQGPCQA-------ASKVVSIDGYNGVPFCNEXALKQAVAV-QPSTVAIDASSAQFQQYSSGIFS  148 (208)
T ss_dssp             HHTCBCBTTTSCCCSSCCCCCC-------CCCCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC
T ss_pred             HhCCcCcccccCccCCCCcCCC-------CCceEEeCeEEEeCCCCHHHHHHHHHh-CCEEEEEEccCcccccccCceEC
Confidence            0 12333334455444445542       1122333333 4554 78889998875 99999999975 89999999998


Q ss_pred             CCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCce
Q psy8713         206 VPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGL  285 (309)
Q Consensus       206 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy  285 (309)
                                                           ..|+. ..+|||+|||||+      +|||||||||++|||+||
T Consensus       149 -------------------------------------~~c~~-~~~HaV~iVGyg~------~yWivkNSWG~~WGe~Gy  184 (208)
T 1o0e_A          149 -------------------------------------GPCGT-KLNHGVTIVGYQA------NYWIVRNSWGRYWGEKGY  184 (208)
T ss_dssp             -------------------------------------CCCCS-CCCEEEEEEEECS------SEEEEECSBCTTSTBTTE
T ss_pred             -------------------------------------CCCCC-cCCEEEEEEEeCC------CeEEEEcCCCCcccCCcE
Confidence                                                 34655 3699999999997      599999999999999999


Q ss_pred             EEEEccC--CccccCcceEEEe
Q psy8713         286 FKILRGK--DECGIESSITAGV  305 (309)
Q Consensus       286 ~~i~~g~--n~cgi~~~~~~~~  305 (309)
                      |||+|+.  |.|||++.+++++
T Consensus       185 ~~i~~~~~~~~Cgi~~~~~~p~  206 (208)
T 1o0e_A          185 IRMLRVGGCGLCGIARLPYYPT  206 (208)
T ss_dssp             EEEECCSTTCGGGTTSSCEEEE
T ss_pred             EEEEcCCCCCcCCCcccceeee
Confidence            9999997  8999999988765

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}

Probab=100.00  E-value=1.9e-41  Score=301.86  Aligned_cols=166  Identities=28%  Similarity=0.566  Sum_probs=126.4

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCC------
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDAS------  137 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~------  137 (309)
                      ||++||||++    +.|+||||||.|||||                    ..|++++.+|...    ...|.++      
T Consensus         1 lP~~~DwR~~----~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~----~~gC~GG~~~~a~   72 (214)
T 2bdz_A            1 YPESIDWREK----GAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERR----SHGCDGGYQTTSL   72 (214)
T ss_dssp             CCSCEETTTT----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCBCCBCHHHHHHHCTT----SCTTBCCCHHHHH
T ss_pred             CCCcEeCCCC----CCCCCCccCCCCccHHHHHhHHHHHHHHHHhcCCccccCHHHHHhhcCC----CCCCCCCCHHHHH
Confidence            7999999999    8999999999999999                    4566666666531    1234443      


Q ss_pred             ------------CCCCcccccccccCccccccccccceeeee-eecc-hHHHHHHHHHhcCCEEEEEecc-cccccCCCc
Q psy8713         138 ------------KGHTPKCVRECQENYDVPYKKDLNFGAKSY-SVSS-NEKSIMKEIYEHGPVEGAFTVF-DDLILYKSG  202 (309)
Q Consensus       138 ------------~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~-~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~sG  202 (309)
                                  .+|+......|.....    ....+.+..| .++. ++++||++|++ |||+++|.++ ++|+.|++|
T Consensus        73 ~y~~~~Gi~~e~~yPY~~~~~~C~~~~~----~~~~~~i~~y~~v~~~~~~~i~~~l~~-gPV~v~i~~~~~~f~~Y~~G  147 (214)
T 2bdz_A           73 QYVVDNGVHTEREYPYEKKQGRCRAKDK----KGPKVYITGYKYVPANDEISLIQAIAN-QPVSVVTDSRGRGFQFYKGG  147 (214)
T ss_dssp             HHHHHHCEEBTTTSCCCSSCCCCCTTTC----CSCEECCCEEEEECSSBHHHHHHHHHH-SCEEEEECCCSHHHHTCCSS
T ss_pred             HHHHHhCCCccccCCCCCCCCCCCCCCC----CCceeeecCEEEeCCCcHHHHHHHHHh-CCEEEEEeeChhHhhcccCc
Confidence                        3454443344542211    0112333334 4543 78899999986 9999999998 789999999


Q ss_pred             eEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCC
Q psy8713         203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGD  282 (309)
Q Consensus       203 iy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~  282 (309)
                      ||.                                     ..|+. .++|||+|||||+      +|||||||||++|||
T Consensus       148 iy~-------------------------------------~~~~~-~~~HaV~iVGyg~------~yWivkNSWG~~WGe  183 (214)
T 2bdz_A          148 IYE-------------------------------------GPCGT-NTDHAVTAVGYGK------TYLLLKNSWGPNWGE  183 (214)
T ss_dssp             EEC-------------------------------------CSCCS-CCCEEEEEEEECS------SEEEEECSBCTTSTB
T ss_pred             eec-------------------------------------CCCCC-CCCeEEEEEEcCC------CeEEEEeCCCCCccc
Confidence            998                                     34655 4699999999997      599999999999999


Q ss_pred             CceEEEEccC----CccccCcceEEEee
Q psy8713         283 NGLFKILRGK----DECGIESSITAGVP  306 (309)
Q Consensus       283 ~Gy~~i~~g~----n~cgi~~~~~~~~~  306 (309)
                      +|||||+|+.    |.|||++.+++++.
T Consensus       184 ~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  211 (214)
T 2bdz_A          184 KGYIRIKRASGRSKGTCGVYTSSFFPIK  211 (214)
T ss_dssp             TTEEEEECCCSBSSCGGGTTSCEEEEEC
T ss_pred             CCEEEEEcCCCCCCCcccccccceEEEe
Confidence            9999999986    89999999887764

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0

Probab=100.00  E-value=5.5e-42  Score=306.91  Aligned_cols=176  Identities=25%  Similarity=0.508  Sum_probs=131.3

Q ss_pred             CCCCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCC---------CCCC---
Q psy8713          82 EDLPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEH---------HVNG---  129 (309)
Q Consensus        82 ~~lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~---------~~~g---  129 (309)
                      .+||++||||++    ++|+||||||.|||||                    ..|++++.+|..         +...   
T Consensus         5 ~~lP~~~Dwr~~----~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gC~GG~~~~a~   80 (224)
T 3f75_A            5 SELPAGVDWRSR----GCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSGGEMNDAF   80 (224)
T ss_dssp             GGSCSCEEHHHH----TCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCBCHHHHH
T ss_pred             cCCCCceecccC----CCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCCceeCHHHHhhcccCCCCCCCCCCCHHHHH
Confidence            468999999999    8999999999999999                    345555555543         2100   


Q ss_pred             ----C-CCCCCCCCCCCcccccccccCccccccccccceeeee-eec-chHHHHHHHHHhcCCEEEEEeccc-ccccCCC
Q psy8713         130 ----T-RPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSY-SVS-SNEKSIMKEIYEHGPVEGAFTVFD-DLILYKS  201 (309)
Q Consensus       130 ----~-~~~C~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~-~~~~~ik~~l~~~GPv~v~~~~~~-~f~~Y~s  201 (309)
                          . .+.+.+..+|+......|......     ..+.+..| .++ .++++||++|. +|||+++|.+.. +|+.|++
T Consensus        81 ~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~-----~~~~i~~~~~~~~~~~~~l~~~l~-~gPV~v~i~~~~~~f~~y~~  154 (224)
T 3f75_A           81 QYVLDSGGICSEDAYPYLARDEECRAQSCE-----KVVKILGFKDVPRRSEAAMKAALA-KSPVSIAIEADQMPFQFYHE  154 (224)
T ss_dssp             HHHHHHTCBCBTTTSCCCSSCCCCCGGGSC-----CCBCCSEEEECCSSCHHHHHHHHH-HSCEEEEECCCSHHHHTEEE
T ss_pred             HHHHHhCCccccccCCCcCCCCCCCcCCCC-----ceEEeccEEEeCCChHHHHHHHHc-CCCEEEEEeccchhhhcCcc
Confidence                1 233444445655444455422111     11222233 444 37889999998 999999999975 8999999


Q ss_pred             ceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCC
Q psy8713         202 GRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWG  281 (309)
Q Consensus       202 Giy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG  281 (309)
                      |||.                                     ..|+ ..++|||+|||||++..++++|||||||||++||
T Consensus       155 Giy~-------------------------------------~~~~-~~~~Hav~iVGyg~~~~~g~~ywivkNSWG~~WG  196 (224)
T 3f75_A          155 GVFD-------------------------------------ASCG-TDLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWG  196 (224)
T ss_dssp             EEEC-------------------------------------CCCC-CCCCEEEEEEEEEEETTTTEEEEEEECSBCTTST
T ss_pred             ceEC-------------------------------------CCCC-CccCeEEEEEEEecccCCCCCEEEEECCcCcchh
Confidence            9998                                     3354 3569999999999875468899999999999999


Q ss_pred             CCceEEEEccC---CccccCcceEEEe
Q psy8713         282 DNGLFKILRGK---DECGIESSITAGV  305 (309)
Q Consensus       282 ~~Gy~~i~~g~---n~cgi~~~~~~~~  305 (309)
                      |+|||||+|+.   |.|||++.+++++
T Consensus       197 ~~Gy~~i~~~~~~~~~cgi~~~~~~p~  223 (224)
T 3f75_A          197 RDGYMYMAMHKGEEGQCGLLLDASFPV  223 (224)
T ss_dssp             BTTEEEEESCSCTTCGGGTTSSCEEEE
T ss_pred             hCCEEEEEcCCCCCCcCcccCceeeee
Confidence            99999999998   9999999988764

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}

Probab=100.00  E-value=8e-42  Score=312.96  Aligned_cols=179  Identities=23%  Similarity=0.514  Sum_probs=130.2

Q ss_pred             CCCCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCC--------CCCC----
Q psy8713          82 EDLPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEH--------HVNG----  129 (309)
Q Consensus        82 ~~lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~--------~~~g----  129 (309)
                      .+||++||||++    ++|+||||||.|||||                    ..|++++.+|..        +...    
T Consensus         2 ~~lP~~~DwR~~----g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~lvdC~~~~~~GC~GG~~~~a~~   77 (262)
T 2fo5_A            2 SDLPPSVDWRQK----GAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTADNDGCQGGLMDNAFE   77 (262)
T ss_dssp             -CCCSCEETTTT----TCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSSCCGGGCBCHHHHHH
T ss_pred             CCCCCcccCCCC----CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhcCCCCCCCCCCCHHHHHH
Confidence            358999999999    8999999999999999                    445566556643        2100    


Q ss_pred             ---CC-CCCCCCCCCCcccccccccCccccccccc-cceeeee-eecc-hHHHHHHHHHhcCCEEEEEecc-cccccCCC
Q psy8713         130 ---TR-PSCDASKGHTPKCVRECQENYDVPYKKDL-NFGAKSY-SVSS-NEKSIMKEIYEHGPVEGAFTVF-DDLILYKS  201 (309)
Q Consensus       130 ---~~-~~C~~~~~~~~~~~~~c~~~~~~~~~~~~-~~~~~~~-~v~~-~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~s  201 (309)
                         .. +.+.+..+|+......|.....  +.... .+.+..| .++. ++++||++|++ |||+++|.++ ++|+.|++
T Consensus        78 yi~~~~Gi~~e~~yPY~~~~~~C~~~~~--~~~~~~~~~i~~y~~v~~~~e~~ik~al~~-GPV~v~i~~~~~~f~~Y~s  154 (262)
T 2fo5_A           78 YIKNNGGLITEAAYPYRAARGTCNVARA--AQNSPVVVHIDGHQDVPANSEEDLARAVAN-QPVSVAVEASGKAFMFYSE  154 (262)
T ss_dssp             HHHHTTCEEBTTTSCCCSSCCCCCHHHH--HHHCCCEECCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCS
T ss_pred             HHHHcCCcCchhcCCCcCccCccCCccc--ccCCceeEEeceEEEcCCchHHHHHHHHHh-CCEEEEEecChHHHhccCC
Confidence               11 2333334455444445542210  00112 2333334 4553 67889988876 9999999997 78999999


Q ss_pred             ceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCC
Q psy8713         202 GRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWG  281 (309)
Q Consensus       202 Giy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG  281 (309)
                      |||.                                     ..|+.. .+|||+|||||++. ++++|||||||||++||
T Consensus       155 GVy~-------------------------------------~~c~~~-~~HaV~IVGyg~~~-~G~~YWivkNSWG~~WG  195 (262)
T 2fo5_A          155 GVFT-------------------------------------GECGTE-LDHGVAVVGYGVAE-DGKAYWTVKNSWGPSWG  195 (262)
T ss_dssp             SEEC-------------------------------------CCCCCC-CCEEEEEEEEEECT-TSCEEEEEECSBCTTST
T ss_pred             ceEC-------------------------------------CCCCCc-CCEEEEEEEEcccC-CCceEEEEEeCCCCCCC
Confidence            9998                                     346654 59999999999873 48899999999999999


Q ss_pred             CCceEEEEccCC----ccccCcceEEEee
Q psy8713         282 DNGLFKILRGKD----ECGIESSITAGVP  306 (309)
Q Consensus       282 ~~Gy~~i~~g~n----~cgi~~~~~~~~~  306 (309)
                      |+|||||+|+.|    .|||++.+++++.
T Consensus       196 e~GY~ri~r~~n~~~~~CgI~~~~~~p~~  224 (262)
T 2fo5_A          196 EQGYIRVEKDSGASGGLCGIAMEASYPVK  224 (262)
T ss_dssp             BTTEEEEESSCSCTTCGGGTTTSCEEEEC
T ss_pred             CCeEEEEEcCCCCCCCccceeeeeeEEEe
Confidence            999999999864    5999999887664

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X

Probab=100.00  E-value=1.7e-38  Score=291.08  Aligned_cols=100  Identities=30%  Similarity=0.589  Sum_probs=83.5

Q ss_pred             HHHHHHHHHhcCCEEEEEecccccccCC-CceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCC
Q psy8713         173 EKSIMKEIYEHGPVEGAFTVFDDLILYK-SGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGG  251 (309)
Q Consensus       173 ~~~ik~~l~~~GPv~v~~~~~~~f~~Y~-sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (309)
                      +++||++|+++|||+++|.+. +|+.|+ +|+|..                                    ..|+...++
T Consensus       157 ~~~ik~~i~~~GPV~v~i~~~-~f~~y~~~g~~~~------------------------------------~~c~~~~~~  199 (265)
T 2wbf_X          157 VKIIKTEVMNKGSVIAYIKAE-NVMGYEFSGKKVK------------------------------------NLCGDDTAD  199 (265)
T ss_dssp             HHHHHHHHHHHSCEEEEECGG-GGCSGGGGSSSEE------------------------------------CCCCCSCCC
T ss_pred             HHHHHHHHHhcCCEEEEEEcc-cccccccCCcEEc------------------------------------CCCCCCcCC
Confidence            478999999999999999984 688775 454431                                    236666789


Q ss_pred             ceEEEEEeecc---CCCCccEEEEEcCCCCCCCCCceEEEEc-cCCccccCcceEEEeecCC
Q psy8713         252 HAIRILGWGED---EKSKEKYWLIANSWNTDWGDNGLFKILR-GKDECGIESSITAGVPKLD  309 (309)
Q Consensus       252 HaV~iVGyg~~---~~~g~~YWiikNSWG~~WG~~Gy~~i~~-g~n~cgi~~~~~~~~~~~~  309 (309)
                      |||+|||||++   .+.+++|||||||||++|||+|||||+| +.|+|||++.+++++|+||
T Consensus       200 HaV~iVGyG~~~~~~g~~~~YWivkNSWG~~WGe~GY~ri~~~g~n~Cgi~~~~~~~~~~~~  261 (265)
T 2wbf_X          200 HAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNVD  261 (265)
T ss_dssp             EEEEEEEEEEEECTTSCEEEEEEEECSBCTTSTBTTEEEEESSCCTTCSSCSCCEEEEECEE
T ss_pred             EEEEEEEEeCCcccCCCcCCEEEEEcCCCCccCCCCEEEEEecCCCccCcceeEEEEecccc
Confidence            99999999984   2223699999999999999999999986 5799999999999999876

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}

Probab=100.00  E-value=9.6e-38  Score=290.08  Aligned_cols=202  Identities=22%  Similarity=0.281  Sum_probs=129.3

Q ss_pred             ccccCCCCcHHHHHHHhCCCCCCCCCCCCCCcccccCCCCCCCCCceecCCCCCCCCCCccccCccCCCCCc--------
Q psy8713          42 EKNSLSNIPRAHLKSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCW--------  113 (309)
Q Consensus        42 g~Nf~~~~~~e~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------  113 (309)
                      ..|++..+++|.++..||.+++.  |..+............+||++||||++    +   ||||||.|||||        
T Consensus        17 ~~~~~~~~~~~~~~~~lG~~p~~--~d~rd~~~~~~~~~~~~lP~s~DwR~~----~---pVkdQG~CGSCWAFAa~~al   87 (291)
T 3ois_A           17 RGSHMQTVLKRRKKSGYGYIPDI--ADIRDFSYTPEKSVIAALPPKVDLTPP----F---QVYDQGRIGSCTANALAAAI   87 (291)
T ss_dssp             ------CCCCCCCCTTCCEECCC--CCTTCCBCCCCHHHHHTCCSEEECCCS----S---CCCBCTTSSCHHHHHHHHHH
T ss_pred             chhhHhHhhhccccccCCCCCCC--CcccccccCCCccccccCCcceecccC----C---CcccCCCCccHHHHHHHHHH
Confidence            34578888889999999998876  332221111111112479999999998    4   999999999999        


Q ss_pred             -----------CCCccccC--CCC-------CCCCC-----------CCCCCCCCCCCCcccc---cccccC-------c
Q psy8713         114 -----------GCRPYEIA--PCE-------HHVNG-----------TRPSCDASKGHTPKCV---RECQEN-------Y  152 (309)
Q Consensus       114 -----------~cs~~~~~--~C~-------~~~~g-----------~~~~C~~~~~~~~~~~---~~c~~~-------~  152 (309)
                                 ..+++++.  .|.       +...|           ..+.+.+..+|+....   ..|...       .
T Consensus        88 E~~~~~~g~~~~lS~q~l~~~~c~~~~~~~~~~c~GG~~~~A~~yi~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~  167 (291)
T 3ois_A           88 QFERIHDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPASKK  167 (291)
T ss_dssp             HHHHHHTTCSSCCCBCHHHHHHHHHHHSSCTTSCCCEEHHHHHHHHHHTCCCBGGGSCCCCCCCCTTTCSCCTTCGGGSC
T ss_pred             HHHHHHhCCCCCcCcCHHHHHhhhhhhhcCCCCCCCcCHHHHHHHHHHhCCCCHhhCCCCCCccccccccccccccccCC
Confidence                       22333222  121       11111           1233333344543321   122210       0


Q ss_pred             c--ccccccccceeee-eeecchHHHHHHHHHhcCCEEEEEecccccccCCC--ceEeCCCCcchhhhhhhhhhcccCcc
Q psy8713         153 D--VPYKKDLNFGAKS-YSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKS--GRFFVPGNETTAMSLIKWTIRDNTSQ  227 (309)
Q Consensus       153 ~--~~~~~~~~~~~~~-~~v~~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~s--Giy~~~~~~~~~~~~~~~~i~~~~~~  227 (309)
                      +  .-+.....+.+.. +.++.++++||++|+++|||+++|.++++|+.|++  |||..|.                   
T Consensus       168 p~~~C~~~~~~~~i~~y~~v~~~e~~i~~al~~~gPV~v~~~~~~~f~~y~~~~Gi~~~~~-------------------  228 (291)
T 3ois_A          168 PSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPLPT-------------------  228 (291)
T ss_dssp             CCHHHHHHHGGGCCCEEEECCSCHHHHHHHHHTTCCEEEEEEEEHHHHGGGCCCSBCCCCC-------------------
T ss_pred             CCHHHHhhcccceeccEEEcCcCHHHHHHHHHcCCCEEEEEEeccchhhcCCCCeEEeCCC-------------------
Confidence            0  0001112333333 36777899999999999999999999999999998  9998541                   


Q ss_pred             cCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEcc
Q psy8713         228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRG  291 (309)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g  291 (309)
                                      .++...++|||+|||||+    +++|||||||||++||++|||||+|+
T Consensus       229 ----------------~~~~~~~~Hav~iVGy~~----~~~ywivkNSWG~~WG~~Gy~~i~~~  272 (291)
T 3ois_A          229 ----------------KNDTLEGGHAVLCVGYDD----EIRHFRIRNSWGNNVGEDGYFWMPYE  272 (291)
T ss_dssp             ----------------TTSCEEEEEEEEEEEEET----TTTEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             ----------------CCCCCcCCeEEEEEEEeC----CCCEEEEEeCCCCCCCCCcEEEEEHH
Confidence                            123445699999999984    47899999999999999999999997

>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A

Probab=99.92  E-value=1.5e-25  Score=217.70  Aligned_cols=107  Identities=17%  Similarity=0.159  Sum_probs=68.9

Q ss_pred             eecchH--HHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccC
Q psy8713         168 SVSSNE--KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKS  245 (309)
Q Consensus       168 ~v~~~~--~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  245 (309)
                      +++.++  +.++.+|.+.|||++++++.+ +.++++|||..+.+.-  -.+.+....      ...+      ...+..+
T Consensus       301 Nvp~~~l~~~~~~al~~g~PV~~~~Dv~~-~~~~k~GI~~~~~~~~--~~~fg~~~~------~m~K------aeRl~~~  365 (453)
T 2cb5_A          301 NQPIDFLKKMVAASIKDGEAVWFGCDVGK-HFNSKLGLSDMNLYDH--ELVFGVSLK------NMNK------AERLTFG  365 (453)
T ss_dssp             ECCHHHHHHHHHHHHHTTCCEEEEECTTT-TEETTTTEECTTSBCH--HHHHSCCSC------SSCH------HHHHHTT
T ss_pred             ccCHHHHHHHHHHHHHcCCCEEEEEEeCh-hhccCCcEEcCccccc--hhhcCcccc------ccCH------HHHhhcc
Confidence            444433  456678899999999999975 4455999998432100  000000000      0000      0000112


Q ss_pred             CCccCCceEEEEEee--ccCCCCc-cEEEEEcCCCCCCCCCceEEEEcc
Q psy8713         246 GKALGGHAIRILGWG--EDEKSKE-KYWLIANSWNTDWGDNGLFKILRG  291 (309)
Q Consensus       246 ~~~~~~HaV~iVGyg--~~~~~g~-~YWiikNSWG~~WG~~Gy~~i~~g  291 (309)
                       ....+|||+|||||  .+. +|+ +|||||||||++||++|||+|+++
T Consensus       366 -~s~~~HAmlivGyg~~~d~-~G~~~yWiVkNSWG~~wG~~GY~~ms~~  412 (453)
T 2cb5_A          366 -ESLMTHAMTFTAVSEKDDQ-DGAFTKWRVENSWGEDHGHKGYLCMTDE  412 (453)
T ss_dssp             -SCCCCEEEEEEEEEECTTS-CSCEEEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             -CCCCCeEEEEEEecccccc-CCCccEEEEEcCcCCCcCcCceEEechh
Confidence             23569999999999  642 566 999999999999999999999986

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A

Probab=99.91  E-value=7.4e-25  Score=213.13  Aligned_cols=107  Identities=19%  Similarity=0.225  Sum_probs=72.5

Q ss_pred             eeeecchH--HHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccc
Q psy8713         166 SYSVSSNE--KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILY  243 (309)
Q Consensus       166 ~~~v~~~~--~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  243 (309)
                      .++++.++  +.++++|.++|||++++++.+ |++|++|||..+.+.-          +   . .+.+  +....... .
T Consensus       303 y~Nvp~d~l~~~~~~aL~~g~PV~~~~Dv~~-~~~~~~GI~~~~~~~~----------~---~-fg~~--~~m~KaeR-l  364 (457)
T 2e01_A          303 YLNVDNETLSKLVVKRLQNNKAVFFGSHTPK-FMDKKTGVMDIELWNY----------P---A-IGYN--LPQQKASR-I  364 (457)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCCEEEEECTTT-TEETTTTEECTTSBCG----------G---G-GTCC--CCCCHHHH-H
T ss_pred             EEEcCHHHHHHHHHHHHHhCCCEEEEEEcCH-hHcccCceecccccch----------h---h-cCcc--cccCHHHh-h
Confidence            34566543  566778899999999999974 7788999996321000          0   0 0000  00000000 1


Q ss_pred             cCCCccCCceEEEEEeeccCCCCc--cEEEEEcCCCCCCCCCceEEEEcc
Q psy8713         244 KSGKALGGHAIRILGWGEDEKSKE--KYWLIANSWNTDWGDNGLFKILRG  291 (309)
Q Consensus       244 ~~~~~~~~HaV~iVGyg~~~~~g~--~YWiikNSWG~~WG~~Gy~~i~~g  291 (309)
                      .+.....+|||+|||||.+. +|+  +|||||||||++||++|||+|+++
T Consensus       365 ~~~~s~~~HAmlivGyg~d~-~G~~p~yW~VkNSWG~~wG~~GY~~ms~~  413 (457)
T 2e01_A          365 RYHESLMTAAMLITGCHVDE-TSKLPLRYRVENSWGKDSGKDGLYVMTQK  413 (457)
T ss_dssp             HTTSCCCCEEEEEEEEEECT-TTCCEEEEEEECSSCTTSTBTTEEEEEHH
T ss_pred             ccCCCCCCeEEEEEEEEecc-CCCccCEEEEEeCccCCcCCCceEEeehh
Confidence            12334569999999999763 566  899999999999999999999996

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}

Probab=99.66  E-value=1.4e-17  Score=158.73  Aligned_cols=123  Identities=16%  Similarity=0.244  Sum_probs=71.1

Q ss_pred             eeeecch--HHHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhhhhhhh-----cccCc---ccCcCCcce
Q psy8713         166 SYSVSSN--EKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTI-----RDNTS---QLGAEGAFT  235 (309)
Q Consensus       166 ~~~v~~~--~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i-----~~~~~---~~~~~~~~~  235 (309)
                      .+++|-+  .+.+.++|.+.-||..+-+|.+.++. +.||...|... .+-.+.+..+     .++..   -..+...+.
T Consensus       222 ~~Nvp~d~l~~~~~~~Lk~G~~V~fg~DV~~~~f~-~~Gi~~~~~~~-~~~~~~g~~~~~~~~~~kaer~~~~~~~~e~~  299 (383)
T 3pw3_A          222 SYNLPLDEFMEVFDNAINTGYTIAWGSDVSESGFT-RDGVAVMPDDE-KVQELSGSDMAHWLKLKPEEKKLNTKPQPQKW  299 (383)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCCEEEEEECCSTTBC-TTSEECCBCHH-HHHHHSSCCHHHHHTSCHHHHCTTTSCCCBCC
T ss_pred             cCCcCHHHHHHHHHHHHHcCCcEEEEcccCccccC-CCceeeCcchh-hHHHhcCcchhhhccCCHHHhhhccCCCcccC
Confidence            4677642  23344466667799999999875555 88998643210 0111111100     00000   000011111


Q ss_pred             ecccccc--ccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEcc
Q psy8713         236 VFDDLIL--YKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRG  291 (309)
Q Consensus       236 ~~~~~~~--~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g  291 (309)
                      +.....+  ........+|||+|||||.+. +|++|||||||||++||++|||+|++.
T Consensus       300 ~tk~~R~~~~d~~~t~~~Ha~~ivG~~~d~-~g~~yw~vkNSWg~~~g~~Gy~~m~~~  356 (383)
T 3pw3_A          300 CTQAERQLAYDNYETTDDHGMQIYGIAKDQ-EGNEYYMVKNSWGTNSKYNGIWYASKA  356 (383)
T ss_dssp             CCHHHHHHHHHTTSSCCEEEEEEEEEEECT-TCCEEEEEECSBCSCSTTTTEEEEEHH
T ss_pred             CCHHHHHHHhhhccCcCCeEEEEEEEEEcC-CCceEEEEEeCCCCCCCcCCeEEecHH
Confidence            1111100  112234569999999999753 678999999999999999999999874

>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}

Probab=97.65  E-value=3.8e-05  Score=57.03  Aligned_cols=46  Identities=7%  Similarity=-0.093  Sum_probs=36.9

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHHHHHHhCCCC
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSWMGVHP   62 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~~lg~~~   62 (309)
                      ++....++|.+||...+.+-.+|++|+|+|+|++.|||+.++|.++
T Consensus        32 iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlT~eEf~~~~g~~~   77 (80)
T 2l95_A           32 IYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEFAQRSGKKV   77 (80)
T ss_dssp             HHHHHHHHHHHHHTTGGGTSCCCCCCCCGGGTSSHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHHHhccCCCCeEecCcccccCCHHHHHHHhCCCC
Confidence            5678889999999876555579999999999999888855777543

>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}

Probab=97.08  E-value=0.0003  Score=55.07  Aligned_cols=44  Identities=11%  Similarity=0.098  Sum_probs=33.7

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHHHHHH-hCCCCCC
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSW-MGVHPDY   64 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~~-lg~~~~~   64 (309)
                      ++..+.++|.+||..   + .+|++|+|.|+|++.|||+++ +|.+...
T Consensus        48 iF~~Nl~~I~~hN~~---~-~sy~lglN~FaDLT~eEF~~~~lg~~~~~   92 (106)
T 3f75_P           48 IFKNNLVYIHTHNQQ---G-YSYSLKMNHFGDLSRDEFRRKYLGFKKSR   92 (106)
T ss_dssp             HHHHHHHHHHHHHTS---C-CSEEECCCTTTTCCHHHHHHHSCCBCC--
T ss_pred             HHHHHHHHHHHHHhc---C-CCeeeCCcccccCCHHHHHHHHcCCCCCc
Confidence            467788899999976   3 699999999999999888764 5655443

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}

Probab=96.75  E-value=0.00013  Score=69.45  Aligned_cols=14  Identities=36%  Similarity=1.170  Sum_probs=13.7

Q ss_pred             CccccCccCCCCCc
Q psy8713         100 IREIRDQGSCGSCW  113 (309)
Q Consensus       100 vtpVkdQg~CGSCW  113 (309)
                      ++||||||+|||||
T Consensus        22 vtpVknQg~cGsCW   35 (383)
T 3pw3_A           22 ITSVKNQNRAGTCW   35 (383)
T ss_dssp             CCCCCBCCBSSCHH
T ss_pred             CCCcccCCCCcHHH
Confidence            89999999999999

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=93.52  E-value=0.032  Score=51.62  Aligned_cols=31  Identities=58%  Similarity=1.480  Sum_probs=28.4

Q ss_pred             ccCCCCCCCcchHHHHHHHHhccccCCCCCC
Q psy8713           8 LCGFGCNGGFPGMAWRYWVKSGIVSGGAYGS   38 (309)
Q Consensus         8 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~s   38 (309)
                      .|++||+||++..||+|+.++||+++..|.+
T Consensus       129 ~~~~GC~GG~~~~A~~yi~~~Gi~te~~Y~~  159 (317)
T 3pbh_A          129 MCGDGCNGGYPAEAWNFWTRKGLVSGGLYES  159 (317)
T ss_dssp             TTBCGGGCBCHHHHHHHHHHTCEEBBCSTTC
T ss_pred             cCCCCCCCCCHHHHHHHHHHhCCCcchhccC
Confidence            4689999999999999999999999999854

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*

Probab=91.29  E-value=0.077  Score=47.22  Aligned_cols=30  Identities=57%  Similarity=1.352  Sum_probs=27.5

Q ss_pred             cCCCCCCCcchHHHHHHHHhccccCCCCCC
Q psy8713           9 CGFGCNGGFPGMAWRYWVKSGIVSGGAYGS   38 (309)
Q Consensus         9 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~s   38 (309)
                      ++.||+||.+..||+|+.++||+++..|.+
T Consensus        68 ~~~GC~GG~~~~a~~yi~~~Gi~~e~~y~~   97 (254)
T 3qsd_A           68 CGLGCEGGILGPAWDYWVKEGIVTGSSKEN   97 (254)
T ss_dssp             SBCTTBCBCHHHHHHHHHHTCBCBCCCTTT
T ss_pred             CCCCCCCCCHHHHHHHHHHcCCCccccccc
Confidence            578999999999999999999999999853

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...

Probab=90.71  E-value=0.1  Score=46.76  Aligned_cols=30  Identities=60%  Similarity=1.499  Sum_probs=27.3

Q ss_pred             cCCCCCCCcchHHHHHHHHhccccCCCCCC
Q psy8713           9 CGFGCNGGFPGMAWRYWVKSGIVSGGAYGS   38 (309)
Q Consensus         9 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~s   38 (309)
                      ++.||+||.+..||+|+.++|++++..|++
T Consensus        73 ~~~gC~GG~~~~a~~y~~~~Gi~~~~~Y~~  102 (266)
T 3cbj_A           73 CGDGCNGGYPAEAWNFWTRKGLVSGGLYES  102 (266)
T ss_dssp             GBCTTBCBCHHHHHHHHHHTCBCBCCSTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHhCcCcCccccc
Confidence            578999999999999999999999888854

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=90.52  E-value=0.13  Score=47.60  Aligned_cols=32  Identities=44%  Similarity=0.856  Sum_probs=28.2

Q ss_pred             ccCCCCCCCcchHHHHHHHHhccccCCCCCCcc
Q psy8713           8 LCGFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQ   40 (309)
Q Consensus         8 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~s~~   40 (309)
                      .|+.||+||++..||+|+.++||+++..| .|+
T Consensus       135 ~~~~GC~GG~~~~A~~yi~~~Gi~~e~~y-PY~  166 (325)
T 3hhi_A          135 DCGDGCNGGDPDRAWAYFSSTGLVSDYCQ-PYP  166 (325)
T ss_dssp             GGBCTTBCBCHHHHHHHHHHTCBCBTTTS-CCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHhCCCccccc-CCc
Confidence            36799999999999999999999998886 554

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...

Probab=88.68  E-value=0.18  Score=43.51  Aligned_cols=36  Identities=33%  Similarity=0.696  Sum_probs=29.7

Q ss_pred             cccccc---CCCCCCCcchHHHHHHHHhccccCCCCCCcc
Q psy8713           4 QQIRLC---GFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQ   40 (309)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~s~~   40 (309)
                      ||+-.|   ..||+||.+..||+|+.++|++++..| .|+
T Consensus        51 q~l~dC~~~~~gC~GG~~~~a~~yi~~~Gi~~e~~y-PY~   89 (212)
T 2cio_A           51 QELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTY-PYE   89 (212)
T ss_dssp             HHHHHHCTTSCTTBCCCHHHHHHHHHHTCBCBTTTS-CCC
T ss_pred             HHHHHhCCCCCCCCCCCHHHHHHHHHHhCcCccccc-CCc
Confidence            455445   689999999999999999999999887 443

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=87.70  E-value=0.19  Score=46.37  Aligned_cols=36  Identities=36%  Similarity=0.746  Sum_probs=30.1

Q ss_pred             cccccc---CCCCCCCcchHHHHHHHHhccccCCCCCCcc
Q psy8713           4 QQIRLC---GFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQ   40 (309)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~s~~   40 (309)
                      ||+-.|   +.||+||.+..||+|+.++||+++..| .|+
T Consensus       157 q~lvdC~~~~~gC~GG~~~~a~~yi~~~Gi~~e~~y-PY~  195 (322)
T 1pci_A          157 QELVDCERRSHGCKGGYPPYALEYVAKNGIHLRSKY-PYK  195 (322)
T ss_dssp             HHHHHSCTTSCGGGCBCHHHHHHHHHHHCBCBTTTS-CCC
T ss_pred             HHHHhhcCCCCCCCCCCHHHHHHHHHHhCCCchhhC-CCC
Confidence            555555   689999999999999999999999887 443

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*

Probab=87.69  E-value=0.18  Score=43.83  Aligned_cols=35  Identities=26%  Similarity=0.485  Sum_probs=29.9

Q ss_pred             cccccc--CCCCCCCcchHHHHHHHHhccccCCCCCCc
Q psy8713           4 QQIRLC--GFGCNGGFPGMAWRYWVKSGIVSGGAYGSK   39 (309)
Q Consensus         4 ~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~s~   39 (309)
                      ||+-.|  ..||+||.+..|++|+.++|++++..| .|
T Consensus        60 q~l~dc~~~~gC~GG~~~~a~~~~~~~Gi~~e~~y-PY   96 (222)
T 3f5v_A           60 QELVDCASQHGCHGDTIPRGIEYIQHNGVVQESYY-RY   96 (222)
T ss_dssp             HHHHHHTCSSTTBCCCHHHHHHHHHHHCEEBGGGS-CC
T ss_pred             HHHHhCcCCCCCCCCCHHHHHHHHHHcCCCchhhC-CC
Confidence            455555  689999999999999999999999988 44

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}

Probab=87.66  E-value=0.22  Score=43.04  Aligned_cols=36  Identities=28%  Similarity=0.709  Sum_probs=30.1

Q ss_pred             cccccc---CCCCCCCcchHHHHHHHHhccccCCCCCCcc
Q psy8713           4 QQIRLC---GFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQ   40 (309)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~s~~   40 (309)
                      ||+-.|   ..||+||.+..|++|+.++|++++..| .|+
T Consensus        51 q~l~dC~~~~~gC~GG~~~~a~~y~~~~Gi~~e~~y-PY~   89 (214)
T 2bdz_A           51 QELLDCERRSHGCDGGYQTTSLQYVVDNGVHTEREY-PYE   89 (214)
T ss_dssp             HHHHHHCTTSCTTBCCCHHHHHHHHHHHCEEBTTTS-CCC
T ss_pred             HHHHhhcCCCCCCCCCCHHHHHHHHHHhCCCccccC-CCC
Confidence            455445   579999999999999999999999988 453

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*

Probab=87.25  E-value=0.26  Score=42.70  Aligned_cols=36  Identities=36%  Similarity=0.746  Sum_probs=29.7

Q ss_pred             cccccc---CCCCCCCcchHHHHHHHHhccccCCCCCCcc
Q psy8713           4 QQIRLC---GFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQ   40 (309)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~s~~   40 (309)
                      ||+-.|   ..||+||.+..|++|+.++|++++..| .|+
T Consensus        51 q~l~dC~~~~~gC~GG~~~~a~~yi~~~Gi~~e~~y-PY~   89 (216)
T 1ppo_A           51 QELVDCERRSHGCKGGYPPYALEYVAKNGIHLRSKY-PYK   89 (216)
T ss_dssp             HHHHHHCSSSCTTBCCCHHHHHHHHHHHCBCBTTTS-CCC
T ss_pred             HHHHhccCCCCCCCCCCHHHHHHHHHHhCcCccccC-Ccc
Confidence            455445   689999999999999999999999887 443

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*

Probab=86.62  E-value=0.29  Score=42.11  Aligned_cols=36  Identities=31%  Similarity=0.633  Sum_probs=29.5

Q ss_pred             cccccc---CCCCCCCcchHHHHHHHHh-ccccCCCCCCcc
Q psy8713           4 QQIRLC---GFGCNGGFPGMAWRYWVKS-GIVSGGAYGSKQ   40 (309)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~a~~~~~~~-~~~~~~~~~s~~   40 (309)
                      ||+-.|   ..||+||.+..|++|+.++ |++++..| .|+
T Consensus        51 q~l~dC~~~~~gC~GG~~~~a~~y~~~~~Gi~~e~~y-PY~   90 (208)
T 1o0e_A           51 QELVDCDKKNHGCLGGAFVFAYQYIINNGGIDTQANY-PYK   90 (208)
T ss_dssp             HHHHHHCTTSCTTBCCCHHHHHHHHHHHTCBCBTTTS-CCC
T ss_pred             HHhhhhcCCCCCCCCCCHHHHHHHHHHhCCcCccccc-Ccc
Confidence            444444   6899999999999999998 99999987 443

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*

Probab=86.27  E-value=0.31  Score=42.22  Aligned_cols=36  Identities=28%  Similarity=0.739  Sum_probs=29.7

Q ss_pred             cccccc---CCCCCCCcchHHHHHHHHhccccCCCCCCcc
Q psy8713           4 QQIRLC---GFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQ   40 (309)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~s~~   40 (309)
                      ||+-.|   ..||+||.+..|++|+.++|++++..| .|+
T Consensus        51 q~l~dC~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~y-PY~   89 (218)
T 1yal_A           51 QELVDCDKHSYGCKGGYQTTSLQYVANNGVHTSKVY-PYQ   89 (218)
T ss_dssp             HHHHHHCTTSCTTBCCCHHHHHHHHHHHCBCBTTTS-CCC
T ss_pred             HHHHHhcCCCCCCCCCCHHHHHHHHHHcCCCccccc-ccc
Confidence            454444   689999999999999999999999887 443

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1

Probab=86.23  E-value=0.31  Score=42.13  Aligned_cols=36  Identities=33%  Similarity=0.725  Sum_probs=29.9

Q ss_pred             cccccc---CCCCCCCcchHHHHHHHHh-ccccCCCCCCcc
Q psy8713           4 QQIRLC---GFGCNGGFPGMAWRYWVKS-GIVSGGAYGSKQ   40 (309)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~a~~~~~~~-~~~~~~~~~s~~   40 (309)
                      ||+-.|   ..||+||.+..|++|+.++ |++++..| .|+
T Consensus        51 q~l~dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~y-PY~   90 (215)
T 1iwd_A           51 QELVDCDTASHGCNGGWMNNAFQYIITNGGIDTQQNY-PYS   90 (215)
T ss_dssp             HHHHHHCTTSCTTBCCCHHHHHHHHHHHTCBCBTTTS-CCC
T ss_pred             hHeEECcCCCCCCCCCCHHHHHHHHHHhCCccccccc-Ccc
Confidence            555555   5799999999999999997 99999987 443

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1

Probab=86.20  E-value=0.24  Score=42.79  Aligned_cols=29  Identities=41%  Similarity=0.770  Sum_probs=26.8

Q ss_pred             CCCCCCCcchHHHHHHHHhccccCCCCCCc
Q psy8713          10 GFGCNGGFPGMAWRYWVKSGIVSGGAYGSK   39 (309)
Q Consensus        10 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~s~   39 (309)
                      ..||+||.+..||+|+.++|++++..| .|
T Consensus        60 ~~gC~GG~~~~a~~~~~~~Gi~~e~~y-PY   88 (213)
T 3ioq_A           60 SYGCRGGFPLYALQYVANSGIHLRQYY-PY   88 (213)
T ss_dssp             SCTTBCCCHHHHHHHHHHHCEEBGGGS-CC
T ss_pred             CCCCCCCCHHHHHHHHHHcCCCchhcc-Cc
Confidence            689999999999999999999999998 44

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1

Probab=86.09  E-value=0.32  Score=41.95  Aligned_cols=35  Identities=29%  Similarity=0.527  Sum_probs=29.1

Q ss_pred             cccccc---CCCCCCCcchHHHHHHHHh-ccccCCCCCCc
Q psy8713           4 QQIRLC---GFGCNGGFPGMAWRYWVKS-GIVSGGAYGSK   39 (309)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~a~~~~~~~-~~~~~~~~~s~   39 (309)
                      ||+-.|   ..||+||.+..|++|+.++ |++++..| .|
T Consensus        51 q~l~dC~~~~~gC~GG~~~~a~~~i~~~~Gi~~e~~y-PY   89 (214)
T 1m6d_A           51 QELLDCDKMDKACMGGLPSNAYSAIKNLGGLETEDDY-SY   89 (214)
T ss_dssp             HHHHHHCSSSCTTBCCCHHHHHHHHHHHTCBCBTTTS-CC
T ss_pred             HHHHHhcCCCCCCCCCCHHHHHHHHHHhcCcccccCc-Cc
Confidence            555555   5799999999999999997 89999887 44

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*

Probab=85.69  E-value=0.33  Score=42.96  Aligned_cols=36  Identities=31%  Similarity=0.583  Sum_probs=29.8

Q ss_pred             cccccc---CCCCCCCcchHHHHHHHHh-ccccCCCCCCcc
Q psy8713           4 QQIRLC---GFGCNGGFPGMAWRYWVKS-GIVSGGAYGSKQ   40 (309)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~a~~~~~~~-~~~~~~~~~s~~   40 (309)
                      ||+-.|   ..||+||.+..||+|+.++ |++++..| .|+
T Consensus        52 q~lvdC~~~~~gC~GG~~~~a~~y~~~~~Gi~~e~~y-PY~   91 (246)
T 2b1m_A           52 QELIDCVDESEGCYNGWHYQSFEWVVKHGGIASEADY-PYK   91 (246)
T ss_dssp             HHHHHHCTTSBTTTBCCHHHHHHHHHHTTCBCBTTTS-CCC
T ss_pred             HHHHhhcCCCCCCCCCCHHHHHHHHHHhCCcCccccc-ccc
Confidence            455444   6899999999999999997 99999987 454

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...

Probab=85.25  E-value=0.36  Score=41.58  Aligned_cols=30  Identities=40%  Similarity=0.650  Sum_probs=26.9

Q ss_pred             CCCCCCCcchHHHHHHHHh-ccccCCCCCCcc
Q psy8713          10 GFGCNGGFPGMAWRYWVKS-GIVSGGAYGSKQ   40 (309)
Q Consensus        10 ~~~~~~~~~~~a~~~~~~~-~~~~~~~~~s~~   40 (309)
                      ..||+||.+..|++|+.++ |++++..| .|+
T Consensus        60 ~~gC~GG~~~~a~~~~~~~~Gi~~e~~y-PY~   90 (215)
T 3kwz_A           60 NDGCGGGYMTNAFQYVQKNRGIDSEDAY-PYV   90 (215)
T ss_dssp             SCTTBCCCHHHHHHHHHHHTCEEBTTTS-CCC
T ss_pred             CCCCCCCCHHHHHHHHHHhCCccccccC-CCc
Confidence            6899999999999999998 99999998 443

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A

Probab=85.20  E-value=0.36  Score=42.50  Aligned_cols=36  Identities=33%  Similarity=0.743  Sum_probs=30.2

Q ss_pred             cccccc---CCCCCCCcchHHHHHHHH-hccccCCCCCCcc
Q psy8713           4 QQIRLC---GFGCNGGFPGMAWRYWVK-SGIVSGGAYGSKQ   40 (309)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~a~~~~~~-~~~~~~~~~~s~~   40 (309)
                      ||+-.|   ..||+||.+..|++|+.+ +|++++..| .|+
T Consensus        68 q~l~dC~~~~~gC~GG~~~~a~~yi~~~~Gi~~e~~y-PY~  107 (241)
T 2oul_A           68 QELVDCSFKNYGCNGGLINNAFEDMIELGGICPDGDY-PYV  107 (241)
T ss_dssp             HHHHHHCTTSCTTBCBCHHHHHHHHHHTTSBCBTTSS-CCC
T ss_pred             HHHHhhcCCCCCCCCCCHHHHHHHHHHhCCcCccccC-CCc
Confidence            555556   579999999999999998 799999987 453

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1

Probab=85.16  E-value=0.38  Score=41.76  Aligned_cols=36  Identities=36%  Similarity=0.721  Sum_probs=30.0

Q ss_pred             cccccc---CCCCCCCcchHHHHHHHHh-ccccCCCCCCcc
Q psy8713           4 QQIRLC---GFGCNGGFPGMAWRYWVKS-GIVSGGAYGSKQ   40 (309)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~a~~~~~~~-~~~~~~~~~s~~   40 (309)
                      ||+-.|   ..||+||.+..|++|+.++ |++++..| .|+
T Consensus        53 q~l~dC~~~~~gC~GG~~~~a~~y~~~~~Gi~~e~~y-PY~   92 (221)
T 1cqd_A           53 QQLVDCTTANHGCRGGWMNPAFQFIVNNGGINSEETY-PYR   92 (221)
T ss_dssp             HHHHHHCTTSCTTBCCCHHHHHHHHHHHTSBCBTTTS-CCC
T ss_pred             ceeEECCCCCCCCCCCCHHHHHHHHHHhCCccccccC-Ccc
Confidence            555556   5799999999999999997 99999887 443

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0

Probab=84.67  E-value=0.34  Score=42.06  Aligned_cols=36  Identities=33%  Similarity=0.508  Sum_probs=25.5

Q ss_pred             cccccc---CCCCCCCcchHHHHHHHHh-ccccCCCCCCcc
Q psy8713           4 QQIRLC---GFGCNGGFPGMAWRYWVKS-GIVSGGAYGSKQ   40 (309)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~a~~~~~~~-~~~~~~~~~s~~   40 (309)
                      ||+-.|   ..||+||.+..||+|+.++ |++++..| .|+
T Consensus        51 q~l~dC~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~y-PY~   90 (222)
T 3u8e_A           51 QQIVDCDTXXXXXXGGDADDAFRWVITNGGIASDANY-PYT   90 (222)
T ss_dssp             HHHHHHCC------CCCHHHHHHHHHHHTCBCBTTTS-CCC
T ss_pred             HHHHhccCcccccCCCCHHHHHHHHHHcCCccchhcC-CCc
Confidence            444444   5799999999999999999 99999998 454

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*

Probab=84.27  E-value=0.34  Score=41.91  Aligned_cols=30  Identities=33%  Similarity=0.784  Sum_probs=26.8

Q ss_pred             CCCCCCCcchHHHHHHHHh-ccccCCCCCCcc
Q psy8713          10 GFGCNGGFPGMAWRYWVKS-GIVSGGAYGSKQ   40 (309)
Q Consensus        10 ~~~~~~~~~~~a~~~~~~~-~~~~~~~~~s~~   40 (309)
                      ..||+||.+..|++|+.++ |++++..| .|+
T Consensus        63 ~~gC~GG~~~~a~~~~~~~~Gi~~e~~y-PY~   93 (220)
T 8pch_A           63 NHGCQGGLPSQAFEYIRYNKGIMGEDTY-PYK   93 (220)
T ss_dssp             CCGGGCCCHHHHHHHHHHHTCEEBTTTS-CCC
T ss_pred             CCCCCCCCHHHHHHHHHHcCCcCccccc-Ccc
Confidence            5799999999999999998 99999988 443

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=84.24  E-value=0.32  Score=44.71  Aligned_cols=36  Identities=25%  Similarity=0.471  Sum_probs=30.4

Q ss_pred             ccccccC--CCCCCCcchHHHHHHHHhccccCCCCCCcc
Q psy8713           4 QQIRLCG--FGCNGGFPGMAWRYWVKSGIVSGGAYGSKQ   40 (309)
Q Consensus         4 ~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~s~~   40 (309)
                      ||+-.|-  .||+||.+..||+|+.++||+++..| .|+
T Consensus       140 q~lvdC~~~~GC~GG~~~~a~~yi~~~Gi~~e~~y-PY~  177 (312)
T 1xkg_A          140 QELVDCASQHGCHGDTIPRGIEYIQHNGVVQESYY-RYV  177 (312)
T ss_dssp             HHHHHHTCSSTTBCCCHHHHHHHHHHHCEEBGGGS-CCC
T ss_pred             HHHHhccCCCCCCCCCHHHHHHHHHHcCCCccccC-Ccc
Confidence            5555663  89999999999999999999999987 553

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1

Probab=84.22  E-value=0.42  Score=41.70  Aligned_cols=30  Identities=30%  Similarity=0.678  Sum_probs=26.8

Q ss_pred             CCCCCCCcchHHHHHHHHh-ccccCCCCCCcc
Q psy8713          10 GFGCNGGFPGMAWRYWVKS-GIVSGGAYGSKQ   40 (309)
Q Consensus        10 ~~~~~~~~~~~a~~~~~~~-~~~~~~~~~s~~   40 (309)
                      ..||+||.+..|++|+.++ |++++..| .|+
T Consensus        62 ~~gC~GG~~~~a~~y~~~~~Gi~~e~~y-PY~   92 (229)
T 1s4v_A           62 NQGCNGGLMDYAFEFIKQRGGITTEANY-PYE   92 (229)
T ss_dssp             CCTTBCBCHHHHHHHHHHHTCBCBTTTS-CCC
T ss_pred             CCCCCCCCHHHHHHHHHHhCCccccccC-Ccc
Confidence            5799999999999999998 99999987 454

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...

Probab=84.22  E-value=0.41  Score=41.39  Aligned_cols=30  Identities=33%  Similarity=0.661  Sum_probs=26.2

Q ss_pred             CCCCCCCcchHHHHHHH-HhccccCCCCCCcc
Q psy8713          10 GFGCNGGFPGMAWRYWV-KSGIVSGGAYGSKQ   40 (309)
Q Consensus        10 ~~~~~~~~~~~a~~~~~-~~~~~~~~~~~s~~   40 (309)
                      ..||+||.+..||+|+. .+|++++..| .|+
T Consensus        62 ~~gC~GG~~~~a~~y~~~~~Gi~~e~~y-PY~   92 (220)
T 2xu3_A           62 NEGCNGGLMDYAFQYVQDNGGLDSEESY-PYE   92 (220)
T ss_dssp             CCTTBCCCHHHHHHHHHHHTCEEBTTTS-CCC
T ss_pred             CCCCCCCCHHHHHHHHHHhCCccccccc-CCc
Confidence            57999999999999997 7899999987 453

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0

Probab=84.08  E-value=0.35  Score=41.88  Aligned_cols=29  Identities=34%  Similarity=0.586  Sum_probs=26.4

Q ss_pred             CCCCCCCcchHHHHHHHH-hccccCCCCCCc
Q psy8713          10 GFGCNGGFPGMAWRYWVK-SGIVSGGAYGSK   39 (309)
Q Consensus        10 ~~~~~~~~~~~a~~~~~~-~~~~~~~~~~s~   39 (309)
                      ..||+||.+..|++|+.+ +|++++..| .|
T Consensus        68 ~~gC~GG~~~~a~~~~~~~~Gi~~e~~y-PY   97 (224)
T 3f75_A           68 NQSCSGGEMNDAFQYVLDSGGICSEDAY-PY   97 (224)
T ss_dssp             CCGGGCBCHHHHHHHHHHHTCBCBTTTS-CC
T ss_pred             CCCCCCCCHHHHHHHHHHhCCccccccC-CC
Confidence            689999999999999998 899999998 44

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=83.86  E-value=0.28  Score=45.02  Aligned_cols=30  Identities=27%  Similarity=0.595  Sum_probs=26.9

Q ss_pred             CCCCCCCcchHHHHHHHHhccccCCCCCCcc
Q psy8713          10 GFGCNGGFPGMAWRYWVKSGIVSGGAYGSKQ   40 (309)
Q Consensus        10 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~s~~   40 (309)
                      +.||+||.+..||.|+..+||+++..| .|+
T Consensus       153 ~~gC~GG~~~~a~~yi~~~Gi~~e~~y-PY~  182 (310)
T 2o6x_A          153 NNGCGGGLMENAYQYLKQFGLETESSY-PYT  182 (310)
T ss_dssp             CCGGGCCCHHHHHHHHTTSCBCBTTTS-CCC
T ss_pred             CCCCCCCCHHHHHHHHHHCCcCchhcC-CCC
Confidence            689999999999999999999999987 443

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*

Probab=83.60  E-value=0.39  Score=42.37  Aligned_cols=36  Identities=28%  Similarity=0.556  Sum_probs=30.1

Q ss_pred             cccccc---CCCCCCCcchHHHHHHHH-hccccCCCCCCcc
Q psy8713           4 QQIRLC---GFGCNGGFPGMAWRYWVK-SGIVSGGAYGSKQ   40 (309)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~a~~~~~~-~~~~~~~~~~s~~   40 (309)
                      ||+-.|   ..||+||.+..|++|+.+ +|++++..| .|+
T Consensus        70 q~lvdC~~~~~gC~GG~~~~a~~y~~~~~Gi~~e~~y-PY~  109 (243)
T 3bwk_A           70 QELVDCSVKNNGCYGGYITNAFDDMIDLGGLCSQDDY-PYV  109 (243)
T ss_dssp             HHHHHHCTTSCGGGCCCHHHHHHHHHHTTSBCBTTTS-CCC
T ss_pred             HHHHHhcCCCCCCCCCCHHHHHHHHHHhCCccccccc-CCc
Confidence            555556   579999999999999998 899999988 453

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} SCOP: d.3.1.1 PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A

Probab=83.13  E-value=0.52  Score=40.77  Aligned_cols=30  Identities=27%  Similarity=0.654  Sum_probs=26.5

Q ss_pred             CCCCCCCcchHHHHHHHHh-ccccCCCCCCcc
Q psy8713          10 GFGCNGGFPGMAWRYWVKS-GIVSGGAYGSKQ   40 (309)
Q Consensus        10 ~~~~~~~~~~~a~~~~~~~-~~~~~~~~~s~~   40 (309)
                      ..||+||.+..||+|+.++ |++++..| .|+
T Consensus        62 ~~gC~GG~~~~a~~~~~~~~Gi~~e~~y-PY~   92 (220)
T 3p5u_A           62 TRGCDGGFMTDGFQFIINNGGINTEANY-PYT   92 (220)
T ss_dssp             CCTTBCCCHHHHHHHHHHHTCBCBTTTS-CCC
T ss_pred             CCCCCCCCHHHHHHHHHHhCCcCccccc-ccc
Confidence            5799999999999999997 89999988 553

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=82.81  E-value=0.41  Score=44.36  Aligned_cols=36  Identities=42%  Similarity=0.800  Sum_probs=30.3

Q ss_pred             cccccc---CCCCCCCcchHHHHHHHHh-ccccCCCCCCcc
Q psy8713           4 QQIRLC---GFGCNGGFPGMAWRYWVKS-GIVSGGAYGSKQ   40 (309)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~a~~~~~~~-~~~~~~~~~s~~   40 (309)
                      ||+-.|   ..||+||.+..||+|+.++ ||+++..| .|+
T Consensus       168 Q~LvdC~~~~~GC~GG~~~~a~~yi~~~~Gi~~e~~y-PY~  207 (331)
T 3qj3_A          168 QQLVDCVPNALGCSGGWMNDAFTYVAQNGGIDSEGAY-PYE  207 (331)
T ss_dssp             HHHHHHCTTSCGGGCCCHHHHHHHHHHHTCEEBTTTS-CCC
T ss_pred             HHHhhhccCCCCCCCCCHHHHHHHHHHcCCcCccccc-Ccc
Confidence            555555   6899999999999999998 99999998 443

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=82.81  E-value=0.5  Score=43.78  Aligned_cols=29  Identities=38%  Similarity=0.732  Sum_probs=26.4

Q ss_pred             CCCCCCcchHHHHHHHHhccccCCCCCCcc
Q psy8713          11 FGCNGGFPGMAWRYWVKSGIVSGGAYGSKQ   40 (309)
Q Consensus        11 ~~~~~~~~~~a~~~~~~~~~~~~~~~~s~~   40 (309)
                      .||+||.+..||+|+.++||+++..| .|+
T Consensus       177 ~GC~GG~~~~a~~yi~~~Gi~~e~~y-PY~  205 (329)
T 3qt4_A          177 AGCDGGWMDSAFSYIHDYGIMSESAY-PYE  205 (329)
T ss_dssp             CTTBCCCHHHHHHHHHHSCBCBTTTS-CCC
T ss_pred             CCCCCCChhHHHHHHHHcCCCcHHHe-eee
Confidence            59999999999999999999999998 454

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}

Probab=82.76  E-value=0.4  Score=42.93  Aligned_cols=32  Identities=31%  Similarity=0.633  Sum_probs=27.7

Q ss_pred             cCCCCCCCcchHHHHHHHHh-ccccCCCCCCccc
Q psy8713           9 CGFGCNGGFPGMAWRYWVKS-GIVSGGAYGSKQA   41 (309)
Q Consensus         9 ~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~s~~~   41 (309)
                      +..||+||.+..||+|+.++ |++++..| .|+.
T Consensus        63 ~~~GC~GG~~~~a~~yi~~~~Gi~~e~~y-PY~~   95 (262)
T 2fo5_A           63 DNDGCQGGLMDNAFEYIKNNGGLITEAAY-PYRA   95 (262)
T ss_dssp             SCCGGGCBCHHHHHHHHHHTTCEEBTTTS-CCCS
T ss_pred             CCCCCCCCCHHHHHHHHHHcCCcCchhcC-CCcC
Confidence            36799999999999999997 99999988 4543

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=82.50  E-value=0.47  Score=43.57  Aligned_cols=36  Identities=36%  Similarity=0.618  Sum_probs=29.6

Q ss_pred             cccccc---CCCCCCCcchHHHHHHH-HhccccCCCCCCcc
Q psy8713           4 QQIRLC---GFGCNGGFPGMAWRYWV-KSGIVSGGAYGSKQ   40 (309)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~a~~~~~-~~~~~~~~~~~s~~   40 (309)
                      ||+-.|   ..||+||.+..||+|+. .+||+++..| .|+
T Consensus       150 q~lvdC~~~~~gC~GG~~~~a~~yi~~~~Gi~~e~~y-PY~  189 (314)
T 1by8_A          150 QNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAY-PYV  189 (314)
T ss_dssp             HHHHTTCTTSCGGGCCCSHHHHHHHHHTTCBCBTTTS-CCC
T ss_pred             HHHHHhcCCCCCCcCCCHHHHHHHHHHcCCcCcHhhC-CCC
Confidence            555555   68999999999999999 5899999987 453

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...

Probab=82.03  E-value=0.44  Score=41.11  Aligned_cols=31  Identities=23%  Similarity=0.548  Sum_probs=25.4

Q ss_pred             cCCCCCCCcchHHHHHHHHh---ccccCCCCCCcc
Q psy8713           9 CGFGCNGGFPGMAWRYWVKS---GIVSGGAYGSKQ   40 (309)
Q Consensus         9 ~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~s~~   40 (309)
                      +..||+||.+..||+|+.++   |+.++..| .|+
T Consensus        59 ~~~gC~GG~~~~a~~y~~~~~~gGi~~e~~y-PY~   92 (215)
T 3i06_A           59 TDSGCSGGLMNNAFEWIVQENNGAVYTEDSY-PYA   92 (215)
T ss_dssp             SSCGGGCCCHHHHHHHHHHHSTTEEEC-CCS-CCC
T ss_pred             CCCCCCCCCHHHHHHHHHHhccccccccCcc-CCc
Confidence            36899999999999999997   78888887 443

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=81.23  E-value=0.47  Score=45.75  Aligned_cols=36  Identities=31%  Similarity=0.679  Sum_probs=29.5

Q ss_pred             cccccc---CCCCCCCcchHH-HHHHHHhccccCCCCCCcc
Q psy8713           4 QQIRLC---GFGCNGGFPGMA-WRYWVKSGIVSGGAYGSKQ   40 (309)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~a-~~~~~~~~~~~~~~~~s~~   40 (309)
                      ||+=.|   +.||+||++..| |+|+.++||+++..| .|+
T Consensus       262 Q~LvdC~~~~~GC~GG~~~~aa~~yi~~~Gi~tE~~y-PY~  301 (441)
T 3pdf_A          262 QEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACF-PYT  301 (441)
T ss_dssp             HHHHHHCTTSCTTBCCCHHHHTTHHHHHTCBCBGGGS-CCC
T ss_pred             HHHHhhccCCCCCCCCchhHHHHHHHHhcCCCcHHHe-eec
Confidence            444444   689999999987 999999999999887 664

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=80.02  E-value=0.76  Score=42.19  Aligned_cols=31  Identities=39%  Similarity=0.747  Sum_probs=26.9

Q ss_pred             cCCCCCCCcchHHHHHHHH-hccccCCCCCCcc
Q psy8713           9 CGFGCNGGFPGMAWRYWVK-SGIVSGGAYGSKQ   40 (309)
Q Consensus         9 ~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~s~~   40 (309)
                      ++.||+||.+..||.|+.+ +||+++..| .|+
T Consensus       160 ~~~gC~GG~~~~a~~yi~~~~Gi~~e~~y-PY~  191 (315)
T 2c0y_A          160 GNKGCNGGFMTTAFQYIIDNKGIDSDASY-PYK  191 (315)
T ss_dssp             TCCGGGCBCHHHHHHHHHHHTCEEBTTTS-CCC
T ss_pred             CCCCCCCCCHHHHHHHHHHhCCcCchhcC-CCc
Confidence            4689999999999999995 899999987 453

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	309
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	1e-37
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	3e-31
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	6e-24
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	1e-23
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	1e-22
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	3e-22
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	3e-21
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	4e-21
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	8e-21
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	4e-20
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	4e-20
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	6e-20
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	6e-20
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	7e-20
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	8e-19
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	2e-18
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	6e-18
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	7e-18
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	8e-18
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	1e-17
d3gcba_	458	d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (S	9e-05
d2cb5a_	453	d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapi	0.002

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 1e-37
 Identities = 98/205 (47%), Positives = 124/205 (60%), Gaps = 40/205 (19%)

Query: 103 IRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNF 162
           +   G   S  GCRPY I PCEHHVNG+RP C   +G TPKC + C+  Y   YK+D ++
Sbjct: 89  LVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT-GEGDTPKCSKICEPGYSPTYKQDKHY 147

Query: 163 GAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIR 222
           G  SYSVS++EK IM EIY++GPVEGAF+V+ D +LYKSG +                  
Sbjct: 148 GYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQ----------------- 190

Query: 223 DNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGD 282
                               + +G+ +GGHAIRILGWG +      YWL+ANSWNTDWGD
Sbjct: 191 --------------------HVTGEMMGGHAIRILGWGVENG--TPYWLVANSWNTDWGD 228

Query: 283 NGLFKILRGKDECGIESSITAGVPK 307
           NG FKILRG+D CGIES + AG+P+
Sbjct: 229 NGFFKILRGQDHCGIESEVVAGIPR 253

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.9 bits (237), Expect = 1e-23
 Identities = 40/253 (15%), Positives = 68/253 (26%), Gaps = 37/253 (14%)

Query: 81  DEDLPANFDSRTKWPNCPTIREIRDQG---SCGSCW----------------GCRPYEIA 121
             DLP ++D R            R+Q     CGSCW                        
Sbjct: 31  PADLPKSWDWRNVD-GVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTL 89

Query: 122 PCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIY 181
               +V     +     G+         ++       +            N+     E  
Sbjct: 90  LSVQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFK 149

Query: 182 EHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLI 241
           E   +           L++ G +         M+ I      +   +  E        + 
Sbjct: 150 ECHAIRNY-------TLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIY 202

Query: 242 LYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE------- 294
                     H + + GWG  +    +YW++ NSW   WG+ G  +I+    +       
Sbjct: 203 AEYQDTTYINHVVSVAGWGISDG--TEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARY 260

Query: 295 -CGIESSITAGVP 306
              IE   T G P
Sbjct: 261 NLAIEEHCTFGDP 273

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score = 92.0 bits (227), Expect = 1e-22
 Identities = 45/228 (19%), Positives = 78/228 (34%), Gaps = 13/228 (5%)

Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPK 143
           +PA+ D    W     +  ++DQG CGSCW           + +  T      S+     
Sbjct: 2   VPASVD----WRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIK-TNKLVSLSEQELVD 56

Query: 144 CVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGR 203
           C  +  +  +           K     + E       YE        +  +   +   G 
Sbjct: 57  CDTDQNQGCNGGLMDYAFEFIKQRGGITTE---ANYPYEAYDGTCDVSKENAPAVSIDGH 113

Query: 204 FFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDE 263
             VP N+  A+         + +       F  + + +   S      H + I+G+G   
Sbjct: 114 ENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTI 173

Query: 264 KSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGIESSITAGVPK 307
               KYW + NSW  +WG+ G  ++ RG  +    CGI    +  + K
Sbjct: 174 DGT-KYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKK 220

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (223), Expect = 3e-22
 Identities = 38/236 (16%), Positives = 73/236 (30%), Gaps = 40/236 (16%)

Query: 85  PANFDSRTKWPNCPTIREIRDQGSCGSCW---------------GCRPYEIAPCEHHVNG 129
           P  +D    W +   + +++DQG CGSCW                     ++  +  ++ 
Sbjct: 2   PPEWD----WRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSE-QELLDC 56

Query: 130 TRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGA 189
            +       G         +    +  + D ++     S   + +     I +   +   
Sbjct: 57  DKMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELS-- 114

Query: 190 FTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKAL 249
                                   M   +  I                           L
Sbjct: 115 QNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLR----------------PLCSPWL 158

Query: 250 GGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGV 305
             HA+ ++G+G+   S   +W I NSW TDWG+ G + + RG   CG+ +  ++ V
Sbjct: 159 IDHAVLLVGYGQR--SDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAV 212

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 87.8 bits (216), Expect = 3e-21
 Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 9/221 (4%)

Query: 85  PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKC 144
           PA  D    W     +  ++DQG CGSCW         C        P  + S+     C
Sbjct: 2   PAAVD----WRARGAVTAVKDQGQCGSCWAFSAIGNVEC-QWFLAGHPLTNLSEQMLVSC 56

Query: 145 VRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRF 204
            +               +  +  + +   +         G      T    +    +G  
Sbjct: 57  DKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHV 116

Query: 205 FVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEK 264
            +P +E    + +        +      ++  +   ++         H + ++G+ +   
Sbjct: 117 ELPQDEAQIAAWLAVNGP--VAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDS-- 172

Query: 265 SKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGV 305
           +   YW+I NSW T WG+ G  +I +G ++C ++   ++ V
Sbjct: 173 AAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 4e-21
 Identities = 43/268 (16%), Positives = 85/268 (31%), Gaps = 29/268 (10%)

Query: 44  NSLSNIPRAHLKSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREI 103
           N+  ++     +  M    +      ++ +      +  + P + D    W     +  +
Sbjct: 61  NAFGDMTSEEFRQVMNGFQNRKPRKGKVFQ----EPLFYEAPRSVD----WREKGYVTPV 112

Query: 104 RDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFG 163
           ++QG CGSCW       +                   + + + +C         +  N G
Sbjct: 113 KNQGQCGSCWAF-----SATGALEGQMFRKTGRLISLSEQNLVDCSGPQ---GNEGCNGG 164

Query: 164 AKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRD 223
              Y+    + +   +  E  P E           Y         +       +   +  
Sbjct: 165 LMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVAT 224

Query: 224 NTSQLGAEGAFTVFDDLILYKSG--------KALGGHAIRILGWGED--EKSKEKYWLIA 273
                 A       +  + YK G             H + ++G+G +  E    KYWL+ 
Sbjct: 225 VGPISVA--IDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVK 282

Query: 274 NSWNTDWGDNGLFKILRGK-DECGIESS 300
           NSW  +WG  G  K+ + + + CGI S+
Sbjct: 283 NSWGEEWGMGGYVKMAKDRRNHCGIASA 310

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score = 88.2 bits (217), Expect = 8e-21
 Identities = 38/239 (15%), Positives = 69/239 (28%), Gaps = 10/239 (4%)

Query: 61  HPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEI 120
             ++      L        ++ + PA  D R      P IR     GS  +  G    E 
Sbjct: 64  AFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTP-IRMQGGCGSAWAFSGVAATES 122

Query: 121 APCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEI 180
           A   +  + +    +              +      +   + G    S            
Sbjct: 123 AYLAYR-DQSLDLAEQELVDCASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCR 181

Query: 181 YEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDL 240
             +    G            +          +A+++I      +  +            +
Sbjct: 182 RPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFR------HYDGRTI 235

Query: 241 ILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIES 299
           I   +G     HA+ I+G+   +     YW++ NSW+T+WGDNG        D   IE 
Sbjct: 236 IQRDNGYQPNYHAVNIVGYSNAQG--VDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEE 292

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score = 85.0 bits (209), Expect = 4e-20
 Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 38/251 (15%)

Query: 77  YSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDA 136
           Y   +    A +D    W     +  ++DQ +CGSCW          ++           
Sbjct: 11  YRGEENFDHAAYD----WRLHSGVTPVKDQKNCGSCWAFSSIGSVESQY--------AIR 58

Query: 137 SKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDL 196
                       QE  D  +K     G    +   +   +     +      +       
Sbjct: 59  KNKLITLS---EQELVDCSFKNYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCN 115

Query: 197 ILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSG------KALG 250
           I   + ++ +    +   + +K  +R          +  V DD   YK G          
Sbjct: 116 IDRCTEKYGIKNYLSVPDNKLKEALRFLGPI---SISVAVSDDFAFYKEGIFDGECGDQL 172

Query: 251 GHAIRILGWGEDE--------KSKEKYWLIANSWNTDWGDNGLFKILRGKD----ECGIE 298
            HA+ ++G+G  E          K  Y++I NSW   WG+ G   I   +     +CG+ 
Sbjct: 173 NHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLG 232

Query: 299 SSITAGVPKLD 309
           +   A +P ++
Sbjct: 233 TD--AFIPLIE 241

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score = 84.7 bits (208), Expect = 4e-20
 Identities = 46/227 (20%), Positives = 75/227 (33%), Gaps = 26/227 (11%)

Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCWGC-------RPYEIAPCEHHVNGTRPSCDA 136
           LP+  D    W +   + +I+ QG CG CW            +I          +   D 
Sbjct: 1   LPSYVD----WRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDC 56

Query: 137 SKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDL 196
            +    +            +  +   G  +   +    +   E       E   T+    
Sbjct: 57  GRTQNTRGCNGGYITDGFQFIIN--NGGINTEENYPYTAQDGECNVDLQNEKYVTID--- 111

Query: 197 ILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRI 256
                    VP N   A+         + +   A  AF  +   I          HA+ I
Sbjct: 112 -----TYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTI 166

Query: 257 LGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILR---GKDECGIESS 300
           +G+G +      YW++ NSW+T WG+ G  +ILR   G   CGI + 
Sbjct: 167 VGYGTEGG--IDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATM 211

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (207), Expect = 6e-20
 Identities = 48/257 (18%), Positives = 83/257 (32%), Gaps = 78/257 (30%)

Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCW----------------GCRPYEIAPCEHHV 127
           LP + D    W     +  +++Q  CGSCW                G             
Sbjct: 1   LPKSVD----WRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDC 56

Query: 128 NGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAK------------------SYSV 169
           +  + +   + G   +  +  +EN  +  ++   + A                   +   
Sbjct: 57  SRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVA 116

Query: 170 SSNEKSIMKEIYEHGPVEGAFTVF-DDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQL 228
              EK++MK +   GP+  A          YKSG +F P   +                 
Sbjct: 117 PGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKN--------------- 161

Query: 229 GAEGAFTVFDDLILYKSGKALGGHAIRILGWGED--EKSKEKYWLIANSWNTDWGDNGLF 286
                                  H + ++G+G +       KYWL+ NSW  +WG NG  
Sbjct: 162 ---------------------LDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYV 200

Query: 287 KILRGKD-ECGIESSIT 302
           KI + K+  CGI ++ +
Sbjct: 201 KIAKDKNNHCGIATAAS 217

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 84.3 bits (207), Expect = 6e-20
 Identities = 44/224 (19%), Positives = 63/224 (28%), Gaps = 22/224 (9%)

Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCWG---CRPYEIAPCEHHVNGTRPSCDASKGH 140
           LP N D    W     +  +R QGSCGSCW        E             S       
Sbjct: 1   LPENVD----WRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDC 56

Query: 141 TPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYK 200
             +             +     G    S    +        +              I+  
Sbjct: 57  ERRSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQ---------VGGPIVKT 107

Query: 201 SGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWG 260
           SG   V  N    +         +         F ++   I          HA+  +G+G
Sbjct: 108 SGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYG 167

Query: 261 EDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGIESS 300
           +     + Y LI NSW T WG+ G  +I R        CG+  S
Sbjct: 168 KSGG--KGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKS 209

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (206), Expect = 7e-20
 Identities = 38/227 (16%), Positives = 67/227 (29%), Gaps = 22/227 (9%)

Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPK 143
           LP + D    W     + E++ QGSCG+CW       +     +         +      
Sbjct: 1   LPDSVD----WREKGCVTEVKYQGSCGACWA-----FSAVGA-LEAQL--KLKTGKLVSL 48

Query: 144 CVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGR 203
             +   +     Y      G    +             +      A              
Sbjct: 49  SAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAA 108

Query: 204 FFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKA-------LGGHAIRI 256
                 E                   + G         LY+SG            H + +
Sbjct: 109 TCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLV 168

Query: 257 LGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DECGIESSIT 302
           +G+G+     ++YWL+ NSW  ++G+ G  ++ R K + CGI S  +
Sbjct: 169 VGYGDLNG--KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 213

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 81.2 bits (199), Expect = 8e-19
 Identities = 40/223 (17%), Positives = 67/223 (30%), Gaps = 22/223 (9%)

Query: 85  PANFDSRTKWPNCPTIREIRDQGSCGSCWG---CRPYEIAPCEHHVNGTRPSCDASKGHT 141
           P + D R K    P    +++QG+CGSCW        E        N    S        
Sbjct: 2   PQSIDWRAKGAVTP----VKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCD 57

Query: 142 PKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKS 201
                          +   N             +     Y+    +   T      +  +
Sbjct: 58  KHSYGCKGGYQTTSLQYVANN---------GVHTSKVYPYQAKQYKCRATDKPGPKVKIT 108

Query: 202 GRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGE 261
           G   VP N  T+          +         F ++   +          HA+  +G+G 
Sbjct: 109 GYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGT 168

Query: 262 DEKSKEKYWLIANSWNTDWGDNGLFKILRGKD----ECGIESS 300
            +   + Y +I NSW  +WG+ G  ++ R        CG+  S
Sbjct: 169 SDG--KNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKS 209

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score = 80.4 bits (197), Expect = 2e-18
 Identities = 38/228 (16%), Positives = 81/228 (35%), Gaps = 16/228 (7%)

Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPK 143
           LP + D    W     +  +++QG CGSCW       +         +         + +
Sbjct: 1   LPDSID----WRENGAVVPVKNQGGCGSCWA-----FSTVAAVEGINQIVTGDLISLSEQ 51

Query: 144 CVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGR 203
            + +C               A  + V++   +  +     G      +  +  ++     
Sbjct: 52  QLVDCTTANHGCRGGW-MNPAFQFIVNNGGINSEETYPYRGQDGICNSTVNAPVVSIDSY 110

Query: 204 FFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDE 263
             VP +   ++         + +   A   F ++   I   S      HA+ ++G+G + 
Sbjct: 111 ENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTEN 170

Query: 264 KSKEKYWLIANSWNTDWGDNGLFKILRGKD----ECGIESSITAGVPK 307
              + +W++ NSW  +WG++G  +  R  +    +CGI    +  V K
Sbjct: 171 D--KDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVKK 216

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (192), Expect = 6e-18
 Identities = 42/225 (18%), Positives = 74/225 (32%), Gaps = 12/225 (5%)

Query: 85  PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKC 144
           P + D R K    P    +++QG CGSCW       +         +         +P+ 
Sbjct: 2   PDSVDYRKKGYVTP----VKNQGQCGSCWA-----FSSVGALEGQLKKKTGKLLNLSPQN 52

Query: 145 VRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRF 204
           + +C    D      +    +    +    S     Y        +         +  R 
Sbjct: 53  LVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYRE 112

Query: 205 FVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEK 264
              GNE      +      + +   +  +F  +   + Y            +L  G   +
Sbjct: 113 IPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ 172

Query: 265 SKEKYWLIANSWNTDWGDNGLFKILRGKD-ECGIESSITAGVPKL 308
              K+W+I NSW  +WG+ G   + R K+  CGI +   A  PK+
Sbjct: 173 KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANL--ASFPKM 215

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score = 78.5 bits (192), Expect = 7e-18
 Identities = 36/220 (16%), Positives = 66/220 (30%), Gaps = 17/220 (7%)

Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPK 143
           LP+  D    W +   +  I++Q  CGSCW           + +  T      S+     
Sbjct: 1   LPSFVD----WRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIR-TGQLISLSEQELVD 55

Query: 144 CVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGR 203
           C     +             A  Y +++      +                 ++     +
Sbjct: 56  C-----DTASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLRVVSINGFQ 110

Query: 204 FFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDE 263
                NE+   S +       T +  A GA        ++        +   ++     +
Sbjct: 111 RVTRNNESALQSAVASQPVSVTVE--AAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQ 168

Query: 264 KSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGIES 299
             K  YW++ NSW  +WG+ G   + R        CGI  
Sbjct: 169 SGK-NYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQ 207

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score = 78.1 bits (191), Expect = 8e-18
 Identities = 43/218 (19%), Positives = 73/218 (33%), Gaps = 20/218 (9%)

Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPK 143
           LP   D R K    P    +++QGSCGSCW           + +  T      S+     
Sbjct: 1   LPEQIDWRKKGAVTP----VKNQGSCGSCWAFSTVSTVESINQIR-TGNLISLSEQELVD 55

Query: 144 CVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGR 203
           C ++        +     +   +  +        +  Y +  V+G        ++   G 
Sbjct: 56  CDKKNHGCLGGAFVFAYQYIINNGGID------TQANYPYKAVQGPCQAASK-VVSIDGY 108

Query: 204 FFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDE 263
             VP     A+           +   +   F  +   I          H + I+G+  + 
Sbjct: 109 NGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGYQAN- 167

Query: 264 KSKEKYWLIANSWNTDWGDNGLFKILR--GKDECGIES 299
                YW++ NSW   WG+ G  ++LR  G   CGI  
Sbjct: 168 -----YWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIAR 200

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 77.8 bits (190), Expect = 1e-17
 Identities = 46/221 (20%), Positives = 67/221 (30%), Gaps = 20/221 (9%)

Query: 84  LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPK 143
           +P   D    W     +  +++QGSCGSCW             +  T    + S+     
Sbjct: 1   IPEYVD----WRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIR-TGNLNEYSEQELLD 55

Query: 144 CVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGR 203
           C R             L   A+               YE                   G 
Sbjct: 56  CDRRSYGCNGGYPWSALQLVAQYGIHYR-----NTYPYEGVQRYCRSREKGPYAAKTDGV 110

Query: 204 FFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDE 263
             V      A+         +     A   F ++   I          HA+  +G+G + 
Sbjct: 111 RQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN- 169

Query: 264 KSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGIESS 300
                Y LI NSW T WG+NG  +I RG       CG+ +S
Sbjct: 170 -----YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTS 205

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

 Score = 41.5 bits (97), Expect = 9e-05
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 252 HAIRILGWGEDEKSKE-KYWLIANSWNTDWGDNGLFKI 288
           HA+ I G   DE SK    + + NSW  D G +GL+ +
Sbjct: 374 HAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVM 411

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 453

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 252 HAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGLF 286
           HA+        +D+      W + NSW  D G  G  
Sbjct: 371 HAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	309
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	100.0
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	100.0
d1gmya_	254	(Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960	100.0
g1k3b.1	233	Cathepsin C (dipeptidyl peptidase I), catalytic do	100.0
g8pch.1	228	Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1me4a_	215	Cruzain {Trypanosoma cruzi [TaxId: 5693]}	100.0
d1m6da_	214	Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2oula1	241	Falcipain 2 {Plasmodium falciparum [TaxId: 5833]}	100.0
d2h7ja1	217	(Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960	100.0
d1yala_	218	Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}	100.0
d1deua_	275	(Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960	100.0
d1cqda_	216	Proline-specific cysteine protease {Ginger rhizome	100.0
d2r6na1	215	(Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960	100.0
d1ppoa_	216	Caricain (protease omega) {Papaya (Carica papaya)	100.0
d1aeca_	218	Actinidin {Chinese gooseberry or kiwifruit (Actini	100.0
d1fh0a_	221	(Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960	100.0
d1khqa_	212	Papain {Papaya (Carica papaya) [TaxId: 3649]}	100.0
d1s4va_	224	Vignain (bean endopeptidase) {Castor bean (Ricinus	100.0
d1o0ea_	208	Ervatamin C {East indian rosebay (Ervatamia corona	100.0
d1iwda_	215	Ervatamin B {Adam's apple (Ervatamia coronaria) [T	100.0
d3gcba_	458	Bleomycin hydrolase {Baker's yeast (Saccharomyces	98.93
d2cb5a_	453	Bleomycin hydrolase {Human (Homo sapiens) [TaxId:	98.59

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-50  Score=372.42  Aligned_cols=238  Identities=20%  Similarity=0.386  Sum_probs=174.7

Q ss_pred             cchHHHHHHHHhccccCCCCCCcccccccCCCCcHHHHHHHhCCCCCCCCCCCCCCcccccCCCCCCCCCceecCCCCCC
Q psy8713          17 FPGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSWMGVHPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPN   96 (309)
Q Consensus        17 ~~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~~~~   96 (309)
                      ++..+.++|.+||.....+-.+|++|+|+|+|++.|||++++.......    .............+||++||||++   
T Consensus        34 iF~~N~~~I~~~N~~~~~~~~~~~~g~N~fsDlt~eEf~~~~~~~~~~~----~~~~~~~~~~~~~~lP~s~Dwr~~---  106 (316)
T d1cs8a_          34 VWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRK----PRKGKVFQEPLFYEAPRSVDWREK---  106 (316)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHCCBCCCC----CSCCEECCCCTTCCCCSCEEGGGG---
T ss_pred             HHHHHHHHHHHHHhHhhcCCCceEEeceeccccCcHHHHhhhccccccc----cccCccccCcccccCCCceECCcC---
Confidence            4667788899999987766679999999999999999988887554331    111111222346789999999999   


Q ss_pred             CCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCCC------------------
Q psy8713          97 CPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDASK------------------  138 (309)
Q Consensus        97 cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~~------------------  138 (309)
                       |+|+||||||.|||||                    ..|++++.+|....  ....|.++.                  
T Consensus       107 -g~vtpVkdQG~CGsCwAfa~~~~~E~~~~i~~~~~~~lS~Q~lvdC~~~~--~~~~c~gg~~~~a~~y~~~~g~~~~e~  183 (316)
T d1cs8a_         107 -GYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ--GNEGCNGGLMDYAFQYVQDNGGLDSEE  183 (316)
T ss_dssp             -TCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGG--TCCGGGCBCHHHHHHHHHHHTCEEBTT
T ss_pred             -CcccccccCCCCceeeehhhhHHHHHHHHhhcCCcccchhhhhhhccccc--cCCCCCCCchHHHHHHHHhcCcccccc
Confidence             9999999999999999                    45667777775421  122233322                  


Q ss_pred             -CCCcccccccccCccccccccccceeee-eeecchHHHHHHHHHhcCCEEEEEecc-cccccCCCceEeCCCCcchhhh
Q psy8713         139 -GHTPKCVRECQENYDVPYKKDLNFGAKS-YSVSSNEKSIMKEIYEHGPVEGAFTVF-DDLILYKSGRFFVPGNETTAMS  215 (309)
Q Consensus       139 -~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~v~~~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~sGiy~~~~~~~~~~~  215 (309)
                       +++..+...|......     ....... .....++++|+++|+++|||++++.+. .+|+.|.+|||..         
T Consensus       184 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~gpv~v~i~~~~~~f~~y~~Gi~~~---------  249 (316)
T d1cs8a_         184 SYPYEATEESCKYNPKY-----SVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE---------  249 (316)
T ss_dssp             TSCCCSSCCCCCCCGGG-----EEECCCCEEECCSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECC---------
T ss_pred             ccccccccccccccccc-----ccccccccccccCcHHHHHHHHHHhCCeEEEEEeccchhccccCCcccC---------
Confidence             2333333333221111     1111111 234568899999999999999999985 6799999999985         


Q ss_pred             hhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccC--CCCccEEEEEcCCCCCCCCCceEEEEccC-
Q psy8713         216 LIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDE--KSKEKYWLIANSWNTDWGDNGLFKILRGK-  292 (309)
Q Consensus       216 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~--~~g~~YWiikNSWG~~WG~~Gy~~i~~g~-  292 (309)
                                                 ..|+...+||||+|||||.+.  .++++|||||||||++|||+|||||+|+. 
T Consensus       250 ---------------------------~~c~~~~~nHaV~iVGyG~d~~~~~g~~YWIikNSWG~~WGe~GY~ri~r~~~  302 (316)
T d1cs8a_         250 ---------------------------PDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRR  302 (316)
T ss_dssp             ---------------------------TTCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSS
T ss_pred             ---------------------------CCCCCCcCCEEEEEEEEcccccCCCCCeEEEEEeCCCCCcccCCEEEEeeCCC
Confidence                                       346666789999999999653  36889999999999999999999999986 


Q ss_pred             CccccCcceEEEe
Q psy8713         293 DECGIESSITAGV  305 (309)
Q Consensus       293 n~cgi~~~~~~~~  305 (309)
                      |.|||++.+++++
T Consensus       303 n~CGI~~~~~yP~  315 (316)
T d1cs8a_         303 NHCGIASAASYPT  315 (316)
T ss_dssp             SGGGTTTSCEEEC
T ss_pred             CcCccCCeeeeee
Confidence            8999999987753

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=100.00  E-value=1.2e-45  Score=342.63  Aligned_cols=224  Identities=23%  Similarity=0.403  Sum_probs=156.1

Q ss_pred             chHHHHHHHHhccccCCCCCCcccccccCCCCcHHHHHHHhCCCCC-CC-C-CCCCCCcccccCCCCCCCCCceecCCCC
Q psy8713          18 PGMAWRYWVKSGIVSGGAYGSKQAEKNSLSNIPRAHLKSWMGVHPD-YN-L-PANRLPELIGYSEVDEDLPANFDSRTKW   94 (309)
Q Consensus        18 ~~~a~~~~~~~~~~~~~~~~s~~~g~Nf~~~~~~e~~~~~lg~~~~-~~-~-~~~~~~~~~~~~~~~~~lP~~~DwR~~~   94 (309)
                      +.++.++|.+|+.           ++|+|+|++.|||+.++..... .. + +...............+||++||||++ 
T Consensus        29 f~~N~~~I~~~n~-----------~~N~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DwR~~-   96 (302)
T d1xkga1          29 FLESVKYVQSNGG-----------AINHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQM-   96 (302)
T ss_dssp             HHHHHHHHHHHCC-----------CCCTTTTSCHHHHHHHHSBCHHHHHHHHHHHC-----CBCCCCSCCCSCEETTTT-
T ss_pred             HHHHHHHHHHhcc-----------CCCcCCCCCHHHHHHHhcCCCcccccccccCCCCccccccccCCCCCcceecccc-
Confidence            5667778888773           7999999999998765543211 10 0 000011111112335689999999999 


Q ss_pred             CCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCCC----------------
Q psy8713          95 PNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDASK----------------  138 (309)
Q Consensus        95 ~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~~----------------  138 (309)
                         |+|+||||||.|||||                    ..|++++.+|...     ..|.++.                
T Consensus        97 ---g~vtpVkdQG~CGsCwAfa~~~~lE~~~~i~~~~~~~lS~q~lvdC~~~-----~~C~gG~~~~a~~~~~~~Gi~~e  168 (302)
T d1xkga1          97 ---RTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCASQ-----HGCHGDTIPRGIEYIQHNGVVQE  168 (302)
T ss_dssp             ---TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHTCS-----STTBCCCHHHHHHHHHHHCEEBG
T ss_pred             ---CccccceeccccceehhhhhHHhHHHHHHHhcCCcccchhHHHHhcccc-----CccCCCccchhhhhhccCcccch
Confidence               9999999999999999                    5567777777531     2355543                


Q ss_pred             --CCCcccccccccCccccccccccceeeee--eecchHHHHHHHHHhcC-CEEEEEec--ccccccCCCceEeCCCCcc
Q psy8713         139 --GHTPKCVRECQENYDVPYKKDLNFGAKSY--SVSSNEKSIMKEIYEHG-PVEGAFTV--FDDLILYKSGRFFVPGNET  211 (309)
Q Consensus       139 --~~~~~~~~~c~~~~~~~~~~~~~~~~~~~--~v~~~~~~ik~~l~~~G-Pv~v~~~~--~~~f~~Y~sGiy~~~~~~~  211 (309)
                        +|+......|.....      ..+....+  ..+.++++|+++|+..+ |+++.+.+  .+.|+.|.+|++..     
T Consensus       169 ~~yPY~~~~~~C~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~gi~~~-----  237 (302)
T d1xkga1         169 SYYRYVAREQSCRRPNA------QRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQ-----  237 (302)
T ss_dssp             GGSCCCSSCCCCCCCSS------CEECCSEEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBC-----
T ss_pred             hhccccccccccccccc------ccceeeeeeeecCchHHHHHHhhhhcccccceeecccccchhhccccceeec-----
Confidence              455444455542221      11222222  23457888999998754 55544443  35688999998874     


Q ss_pred             hhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEcc
Q psy8713         212 TAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRG  291 (309)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g  291 (309)
                                                     ..|+...++|||+|||||++  ++++|||||||||++|||+|||||+||
T Consensus       238 -------------------------------~~~~~~~~~HaV~iVGyg~~--~g~~YWivkNSWG~~WGe~GY~~i~~~  284 (302)
T d1xkga1         238 -------------------------------RDNGYQPNYHAVNIVGYSNA--QGVDYWIVRNSWDTNWGDNGYGYFAAN  284 (302)
T ss_dssp             -------------------------------CCCSSCCEEEEEEEEEEEEE--TTEEEEEEECSBCTTSTBTTEEEEECS
T ss_pred             -------------------------------CCCCCCcCCEEEEEEEEecc--CCeEEEEEEcCCCCchhcCCEEEEECC
Confidence                                           34666667899999999998  889999999999999999999999999


Q ss_pred             CCccccCcceEEEe
Q psy8713         292 KDECGIESSITAGV  305 (309)
Q Consensus       292 ~n~cgi~~~~~~~~  305 (309)
                      .|.|||++.+++++
T Consensus       285 ~n~cgi~~~~~~~~  298 (302)
T d1xkga1         285 IDLMMIEEYPYVVI  298 (302)
T ss_dssp             SCGGGTTTCCEEEE
T ss_pred             CCeeccCCCcEEEE
Confidence            99999999988775

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-45  Score=328.60  Aligned_cols=101  Identities=65%  Similarity=1.277  Sum_probs=92.6

Q ss_pred             eecchHHHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCC
Q psy8713         168 SVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGK  247 (309)
Q Consensus       168 ~v~~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (309)
                      .....++.||++|+++|||+++|.++++|+.|++|++.                                     ..+..
T Consensus       153 ~~~~~~~~ik~~l~~~gpv~~~~~~~~~f~~y~~gi~~-------------------------------------~~~~~  195 (254)
T d1gmya_         153 SVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQ-------------------------------------HVTGE  195 (254)
T ss_dssp             ECCSCHHHHHHHHHHHCCEEEEEEEEGGGTTCCSSEEC-------------------------------------CCSCC
T ss_pred             ccccHHHHHHHHHHHcCCEEEEEEeechhhhccCCccc-------------------------------------ccccc
Confidence            33457889999999999999999999999999999998                                     34556


Q ss_pred             ccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEccCCccccCcceEEEeec
Q psy8713         248 ALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGVPK  307 (309)
Q Consensus       248 ~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g~n~cgi~~~~~~~~~~  307 (309)
                      ..++|||+|||||++  ++.+|||||||||++|||+|||||+|+.|.|||++.+++++|+
T Consensus       196 ~~~~Hav~IVGyg~~--~g~~ywIvkNSWG~~WGd~GYf~i~~~~n~cgi~~~~~~~~p~  253 (254)
T d1gmya_         196 MMGGHAIRILGWGVE--NGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR  253 (254)
T ss_dssp             EEEEEEEEEEEEEEE--TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECCBC
T ss_pred             ccccEEEEEEEEecc--CCceEEEEEcCCCCCcCCCceEEEEcCCCccCcCCceEeccCC
Confidence            678999999999998  7899999999999999999999999999999999999999996

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=2.9e-41  Score=296.71  Aligned_cols=174  Identities=22%  Similarity=0.477  Sum_probs=123.5

Q ss_pred             CCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCC---------------
Q psy8713          85 PANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNG---------------  129 (309)
Q Consensus        85 P~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g---------------  129 (309)
                      |++||||++    ++|+||||||.|||||                    ..+++.+..|.....+               
T Consensus         2 P~~~DwR~~----~~vtpV~dQg~cGsCwAfa~~~~le~~~~i~~~~~~~ls~q~l~~c~~~~~~~~g~~~~~~~~~~~~   77 (215)
T d1me4a_           2 PAAVDWRAR----GAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQ   77 (215)
T ss_dssp             CSEEEGGGT----TCCCCCCBCTTSSCHHHHHHHHHHHHHHHHTTSCCCCBCHHHHHHHCTTSCGGGCCCHHHHHHHHHH
T ss_pred             CCCeeCCCC----CCCCCCccCCcCccHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhhcCCCCCCCCcccccceeeee
Confidence            999999999    9999999999999999                    2334444444332110               


Q ss_pred             --CCCCCCCCCCCCcccccccccCccccccccccceeeee-eecchHHHHHHHHHhcCCEEEEEecccccccCCCceEeC
Q psy8713         130 --TRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSY-SVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFV  206 (309)
Q Consensus       130 --~~~~C~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~  206 (309)
                        ....+....+|+......|......  .....+....+ .+..+.+.||++|+++|||++.+.+. .|+.|.+++|..
T Consensus        78 ~~~~~~~~~~~ypy~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ik~~i~~~gpv~~~~~~~-~~~~~~~~~~~~  154 (215)
T d1me4a_          78 ENNGAVYTEDSYPYASGEGISPPCTTS--GHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDAS-SWMTYTGGVMTS  154 (215)
T ss_dssp             HSTTEEEBTTTSCCCCTTSCCCCCCCS--SCCEEEECCEEEECCSCHHHHHHHHHHHCCEEEEECCT-TGGGCCSSEECS
T ss_pred             ccCCccccCcccCcccccccccccccc--ccccceEeeeeeeccccHHHHHHHHHhcCceeEEEEee-eecccccccccC
Confidence              0011112223333222222211100  00011122222 45568899999999999999999885 588999999873


Q ss_pred             CCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceE
Q psy8713         207 PGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLF  286 (309)
Q Consensus       207 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~  286 (309)
                                                            +....++|||+|||||++  .+++|||||||||++|||+|||
T Consensus       155 --------------------------------------~~~~~~~Hav~IVGyg~~--~~~~ywivrNSWG~~WGd~Gy~  194 (215)
T d1me4a_         155 --------------------------------------CVSEQLDHGVLLVGYNDS--AAVPYWIIKNSWTTQWGEEGYI  194 (215)
T ss_dssp             --------------------------------------CCCSCCCEEEEEEEEESS--SSSCEEEEECSBCTTSTBTTEE
T ss_pred             --------------------------------------CccccceeEEEEEEcccc--CCceEEEEEcCCCCCcccCCEE
Confidence                                                  334457999999999998  8899999999999999999999


Q ss_pred             EEEccCCccccCcceEEEe
Q psy8713         287 KILRGKDECGIESSITAGV  305 (309)
Q Consensus       287 ~i~~g~n~cgi~~~~~~~~  305 (309)
                      ||+||.|+|||++++++++
T Consensus       195 ~i~~g~n~cgI~~~~~~~~  213 (215)
T d1me4a_         195 RIAKGSNQCLVKEEASSAV  213 (215)
T ss_dssp             EEESSSCGGGTTSSEEEEE
T ss_pred             EEECCCCccccCCceeeEe
Confidence            9999999999999999887

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-41  Score=295.73  Aligned_cols=174  Identities=28%  Similarity=0.590  Sum_probs=124.1

Q ss_pred             CCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCCC------
Q psy8713          85 PANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDASK------  138 (309)
Q Consensus        85 P~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~~------  138 (309)
                      |++||||++    ++||||||||.|||||                    ..|++.+..|....    ..|.++.      
T Consensus         2 P~~~D~R~~----~~vtpV~dQg~cGsCwAfa~~~~le~~~~~~~~~~~~~S~q~~~~c~~~~----~gc~G~~~~~~~~   73 (214)
T d1m6da_           2 PPEWDWRSK----GAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMD----KACMGGLPSNAYS   73 (214)
T ss_dssp             CSCEEGGGG----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSS----CTTBCCCHHHHHH
T ss_pred             CCceeCCCC----CCCCCCccCCcCccHHHHHHHHHHHHHHHHHcCCCcccCHHHhccccccC----CccCCCcchhhHH
Confidence            999999999    8999999999999999                    44555555554421    1233221      


Q ss_pred             -------------CCCcccccccccCccccccccccceeeeeeecchHHHHHHHHHhcCCEEEEEecccccccCCCceEe
Q psy8713         139 -------------GHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFF  205 (309)
Q Consensus       139 -------------~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~  205 (309)
                                   +|+......|.....    ....+.........++++||++|+++|||+++|.+. +|.+|..|++.
T Consensus        74 ~~~~~g~~~~e~~~py~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ik~~i~~~gpv~~~~~~~-~~~~~~~g~~~  148 (214)
T d1m6da_          74 AIKNLGGLETEDDYSYQGHMQSCQFSAE----KAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAF-GMQFYRHGISR  148 (214)
T ss_dssp             HHHHHTCBCBTTTSCCCSSCCCCCCCGG----GCCBCCSEEEECCSCHHHHHHHHHHHCCEEEEECTH-HHHHCCSSEEC
T ss_pred             HHHhCCcccccccccccCccCccccccc----ccceeeecccccccCHHHHHHHHHhcCCeEEEEEEE-ehhhccCCccc
Confidence                         222211111111000    001111222234457899999999999999999885 45556566554


Q ss_pred             CCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCce
Q psy8713         206 VPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGL  285 (309)
Q Consensus       206 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy  285 (309)
                      ...                                  ..++...++|||+|||||++  .+++|||||||||++|||+||
T Consensus       149 ~~~----------------------------------~~~~~~~~~HaV~iVGyg~~--~~~~ywivkNSWG~~WGd~Gy  192 (214)
T d1m6da_         149 PLR----------------------------------PLCSPWLIDHAVLLVGYGQR--SDVPFWAIKNSWGTDWGEKGY  192 (214)
T ss_dssp             CCG----------------------------------GGSCTTCCCEEEEEEEEEEE--TTEEEEEEECSBCTTSTBTTE
T ss_pred             ccc----------------------------------CCCCCcccceeEEEEccccc--CCceEEEEECCCCCccccCCE
Confidence            210                                  34556678999999999998  789999999999999999999


Q ss_pred             EEEEccCCccccCcceEEEeec
Q psy8713         286 FKILRGKDECGIESSITAGVPK  307 (309)
Q Consensus       286 ~~i~~g~n~cgi~~~~~~~~~~  307 (309)
                      |||+||.|.|||++.+++++++
T Consensus       193 ~~i~~g~n~cgI~~~~~~~~~~  214 (214)
T d1m6da_         193 YYLHRGSGACGVNTMASSAVVD  214 (214)
T ss_dssp             EEEESSSCGGGTTTTCEEEECC
T ss_pred             EEEEcCCCcccccceeeEEecC
Confidence            9999999999999999998875

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-40  Score=290.13  Aligned_cols=173  Identities=27%  Similarity=0.572  Sum_probs=120.9

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCCC-----
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDASK-----  138 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~~-----  138 (309)
                      ||++||||+.    ++|+||||||.|||||                    ..+++.+..|.... .....|.++.     
T Consensus         1 LP~~~Dwr~~----~~vtpV~dQG~cGsCwAfA~~~~~e~~~~i~~~~~~~~S~~~~~~~~~~~-~~~~gc~gg~~~~a~   75 (217)
T d2h7ja1           1 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK-YGNKGCNGGFMTTAF   75 (217)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGG-GTCCTTBCCCHHHHH
T ss_pred             CCCcccCCcC----CCCCCCccCCCchHHHHHHHHHHHHHHHHHHhCCCCcccHHHhhhhhccc-ccCCCCCCCccccee
Confidence            7999999999    8899999999999999                    22333222232110 0122344332     


Q ss_pred             --------------CCCcccccccccCccccccccccceeeeee--ecchHHHHHHHHHhcCCEEEEEec-ccccccCCC
Q psy8713         139 --------------GHTPKCVRECQENYDVPYKKDLNFGAKSYS--VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKS  201 (309)
Q Consensus       139 --------------~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~--v~~~~~~ik~~l~~~GPv~v~~~~-~~~f~~Y~s  201 (309)
                                    +|+......+....     ....+....+.  ....++.||++|++.|||++.+.. ..+|..|++
T Consensus        76 ~~~~~~~g~~~~~~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~v~~~~~~~~~~f~~~~~  150 (217)
T d2h7ja1          76 QYIIDNKGIDSDASYPYKAMDQKCQYDS-----KYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRS  150 (217)
T ss_dssp             HHHHHHTCEEBTTTSCCCSSCCCCCCCG-----GGEEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCS
T ss_pred             eehhhcccccccccCCCccccccccccc-----ccccceeeeeeccCccHHHHHHHHhhcCceEEEEEeeehhhhcccCC
Confidence                          22222111111100     11112222222  224678899999999999998865 477889999


Q ss_pred             ceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCC
Q psy8713         202 GRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWG  281 (309)
Q Consensus       202 Giy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG  281 (309)
                      |||..|                                     ++...++|||+|||||++  .+++|||||||||+.||
T Consensus       151 gi~~~~-------------------------------------~~~~~~~Hav~iVGy~~~--~~~~ywivrNSWG~~WG  191 (217)
T d2h7ja1         151 GVYYEP-------------------------------------SCTQNVNHGVLVVGYGDL--NGKEYWLVKNSWGHNFG  191 (217)
T ss_dssp             SCBCCT-------------------------------------TCCSCCCEEEEEEEEEEE--TTEEEEEEECSBCTTST
T ss_pred             cceeCC-------------------------------------CCCCCCCeEEEEEecccC--CCceEEEEEcCCCCCcc
Confidence            999843                                     344567999999999998  78999999999999999


Q ss_pred             CCceEEEEccC-CccccCcceEEEe
Q psy8713         282 DNGLFKILRGK-DECGIESSITAGV  305 (309)
Q Consensus       282 ~~Gy~~i~~g~-n~cgi~~~~~~~~  305 (309)
                      |+|||||+|+. |.|||++.+++++
T Consensus       192 ~~Gy~~i~~~~~n~cgi~~~~~~p~  216 (217)
T d2h7ja1         192 EEGYIRMARNKGNHCGIASFPSYPE  216 (217)
T ss_dssp             BTTEEEEECSSSSGGGTTTSCEEEE
T ss_pred             cCCEEEEecCCCCcCCcccccccee
Confidence            99999999997 9999999887653

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=8.8e-40  Score=287.99  Aligned_cols=175  Identities=26%  Similarity=0.485  Sum_probs=124.0

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCC-------------
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGT-------------  130 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~-------------  130 (309)
                      .|++||||++    ++|+||||||.|||||                    ..|++.+.+|.....+.             
T Consensus         1 ~P~~~DwR~~----~~vtpV~dQg~cGsCwAfa~~~~~e~~~~~~~~~~~~lS~q~l~~c~~~~~g~~g~~~~~~~~~~~   76 (218)
T d1yala_           1 YPQSIDWRAK----GAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVA   76 (218)
T ss_dssp             CCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHH
T ss_pred             CCCCEeCCCC----CCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccchhhhhccccccCCCcccccchhhhhhh
Confidence            3999999999    8999999999999999                    45666666665432110             


Q ss_pred             -CCCCCCCCCCCcccccccccCccccccccccce-eeeeeecchHHHHHHHHHhcCCEEEEEecc-cccccCCCceEeCC
Q psy8713         131 -RPSCDASKGHTPKCVRECQENYDVPYKKDLNFG-AKSYSVSSNEKSIMKEIYEHGPVEGAFTVF-DDLILYKSGRFFVP  207 (309)
Q Consensus       131 -~~~C~~~~~~~~~~~~~c~~~~~~~~~~~~~~~-~~~~~v~~~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~sGiy~~~  207 (309)
                       ...+.+...|+..+...+...    ........ .....+..+.++++++|+.+|||++++.+. +.|+.|++|||..|
T Consensus        77 ~~g~~~e~~~py~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~Giy~~~  152 (218)
T d1yala_          77 NNGVHTSKVYPYQAKQYKCRAT----DKPGPKVKITGYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGP  152 (218)
T ss_dssp             HHCBCBTTTSCCCSSCCCCCGG----GCCSCCBCCSEEEECCSSBHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCS
T ss_pred             hhcccccccCCcccccCccccc----cccccceeeccceEeCCccHHHHHHHHHhCCceEEEEecccchhhcccceeeec
Confidence             001111122332222211110    01111111 222345556777888899999999999986 45679999999842


Q ss_pred             CCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEE
Q psy8713         208 GNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFK  287 (309)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~  287 (309)
                                                           +.. .++|||+|||||++  ++++|||||||||++|||+||||
T Consensus       153 -------------------------------------~~~-~~~Hav~IVGyg~~--~g~~ywivkNSWG~~WGd~Gy~~  192 (218)
T d1yala_         153 -------------------------------------CGT-KLDHAVTAVGYGTS--DGKNYIIIKNSWGPNWGEKGYMR  192 (218)
T ss_dssp             -------------------------------------CCS-CCCEEEEEEEEEEE--TTEEEEEEECSBCTTSTBTTEEE
T ss_pred             -------------------------------------ccc-cCCcEEEEEEeecc--CCceEEEEECCCCCCcccCCEEE
Confidence                                                 222 46999999999998  78999999999999999999999


Q ss_pred             EEccC----CccccCcceEEEee
Q psy8713         288 ILRGK----DECGIESSITAGVP  306 (309)
Q Consensus       288 i~~g~----n~cgi~~~~~~~~~  306 (309)
                      |+|+.    |.|||++.++.++.
T Consensus       193 I~~~~~~~~~~CGI~~~~~~p~~  215 (218)
T d1yala_         193 LKRQSGNSQGTCGVYKSSYYPFK  215 (218)
T ss_dssp             EECCCSBSCCGGGTTSSCEEEEC
T ss_pred             EEccCCCCCCcCCccceeeeccC
Confidence            99986    57999999988763

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-40  Score=298.31  Aligned_cols=106  Identities=27%  Similarity=0.610  Sum_probs=92.8

Q ss_pred             eeeeeecchHHHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccc
Q psy8713         164 AKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILY  243 (309)
Q Consensus       164 ~~~~~v~~~~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  243 (309)
                      +..+....+.+.||++|+++|||+++|.+.++|++|++|||.                                     .
T Consensus       162 i~~~~~~~~~e~ik~~l~~~GPv~v~~~~~~~f~~y~~Gi~~-------------------------------------~  204 (275)
T d1deua_         162 VGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYA-------------------------------------E  204 (275)
T ss_dssp             EEEEEEECSHHHHHHHHHHHCCEEEEECCCHHHHTCCSSEEC-------------------------------------B
T ss_pred             eCceeecCcHHHHHHHHHhCCCcEEEEEeccchhccCCCccc-------------------------------------C
Confidence            344444456788999999999999999999999999999998                                     3


Q ss_pred             cCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEEEccCCcc--------ccCcceEEEeecC
Q psy8713         244 KSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDEC--------GIESSITAGVPKL  308 (309)
Q Consensus       244 ~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i~~g~n~c--------gi~~~~~~~~~~~  308 (309)
                      .++...++|||+|||||++  ++++|||||||||++|||+|||||+|+.+.|        +||+.+++++|.+
T Consensus       205 ~~~~~~~~HAV~IVGyg~~--~g~~ywivrNSWG~~WGd~Gyf~I~~~~~~~~~~~~~~~~ie~~~~~~~p~~  275 (275)
T d1deua_         205 YQDTTYINHVVSVAGWGIS--DGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGDPIV  275 (275)
T ss_dssp             CCSCCCCCEEEEEEEEEEE--TTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGTBTTTTSCEEEEEECC
T ss_pred             ccccccCCeEEEEEEEecc--CCcEEEEEECCCCCCcccCCEEEEECCCCCCCccccccccccCccEecCCcC
Confidence            4556668999999999998  8899999999999999999999999987655        5999999999975

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

Probab=100.00  E-value=2.5e-39  Score=284.00  Aligned_cols=171  Identities=26%  Similarity=0.566  Sum_probs=124.3

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCCC-----
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDASK-----  138 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~~-----  138 (309)
                      ||++||||++    ++|+||||||.|||||                    ..|++.+.+|....    ..|.++.     
T Consensus         1 LP~~~DwR~~----~~itpV~dQg~cgsCwAfa~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~----~gc~Gg~~~~a~   72 (216)
T d1cqda_           1 LPDSIDWREN----GAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTAN----HGCRGGWMNPAF   72 (216)
T ss_dssp             CCSCEETTTT----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTS----CTTBCCCHHHHH
T ss_pred             CCCcccCCcC----CCCCCcccCCCCchHHHHHHHHHHHHHHHHHhCCCccccHHHhhhccccc----CCCCCcchHHHH
Confidence            7999999999    9999999999999999                    44555555554321    1233322     


Q ss_pred             --------------CCCcccccccccCccccccccccceeeee-eecchHHHHHHHHHhcCCEEEEEecc-cccccCCCc
Q psy8713         139 --------------GHTPKCVRECQENYDVPYKKDLNFGAKSY-SVSSNEKSIMKEIYEHGPVEGAFTVF-DDLILYKSG  202 (309)
Q Consensus       139 --------------~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~sG  202 (309)
                                    +|+......+....     ....+....+ .+..+.+++++.|...+|+.+++.+. .+|..|++|
T Consensus        73 ~y~~~~g~~~~e~~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~g  147 (216)
T d1cqda_          73 QFIVNNGGINSEETYPYRGQDGICNSTV-----NAPVVSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSG  147 (216)
T ss_dssp             HHHHHHTSBCBTTTSCCCSSCCCCCSSS-----CCCSBCCSEEEECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSS
T ss_pred             HHHHhcCCccccccCCcccccccccccc-----CCceeEeeeEEecCCcchhhHHHHhhcCCcceeeeeecccccccccC
Confidence                          12211111111111     1111222222 33446677888888899999999885 678899999


Q ss_pred             eEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCC
Q psy8713         203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGD  282 (309)
Q Consensus       203 iy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~  282 (309)
                      ||..                                      +....++|||+|||||++  .+++|||||||||++|||
T Consensus       148 i~~~--------------------------------------~~~~~~~Hav~iVGyg~~--~~~~~wiv~NSWG~~WGd  187 (216)
T d1cqda_         148 IFTG--------------------------------------SCNISANHALTVVGYGTE--NDKDFWIVKNSWGKNWGE  187 (216)
T ss_dssp             EECC--------------------------------------CCCCCCCEEEEEEEEEEE--TTEEEEEEECSBCTTSTB
T ss_pred             cccc--------------------------------------cccccCCcceeeeccccc--cCCceEEEECCCCCcccc
Confidence            9983                                      234457999999999998  789999999999999999


Q ss_pred             CceEEEEccC----CccccCcceEEEeec
Q psy8713         283 NGLFKILRGK----DECGIESSITAGVPK  307 (309)
Q Consensus       283 ~Gy~~i~~g~----n~cgi~~~~~~~~~~  307 (309)
                      +|||||+|+.    +.|||++.+++++|+
T Consensus       188 ~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~~  216 (216)
T d1cqda_         188 SGYIRAERNIENPDGKCGITRFASYPVKK  216 (216)
T ss_dssp             TTEEEEECSCSSTTCGGGTTSSCEEEECC
T ss_pred             CCEEEEEcCCCCCCCCCCccceeeeeecC
Confidence            9999999976    679999999999885

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-39  Score=284.54  Aligned_cols=169  Identities=27%  Similarity=0.578  Sum_probs=122.2

Q ss_pred             CCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCCC------
Q psy8713          85 PANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDASK------  138 (309)
Q Consensus        85 P~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~~------  138 (309)
                      |++||||++    ++|+||||||.|||||                    +.|++.+..|...    ...|.++.      
T Consensus         2 P~~~DwR~~----~~vtpV~dQG~cGsCwAfa~~~~~e~~~~~~~~~~~~lS~q~l~~c~~~----~~~c~G~~~~~a~~   73 (215)
T d2r6na1           2 PDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE----NDGCGGGYMTNAFQ   73 (215)
T ss_dssp             CSCEETTTT----TCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTT----SCGGGCCCHHHHHH
T ss_pred             CCCEeCccC----CCCCCCccCccChhHHHHHHHHHHHHHHHHHhCCCccchhhhhhhcccc----cCccCCcchhhHHH
Confidence            999999999    9999999999999999                    4555555556442    11233322      


Q ss_pred             -------------CCCcccccccccCccccccccccceeeee--eecchHHHHHHHHHhcCCEEEEEec-ccccccCCCc
Q psy8713         139 -------------GHTPKCVRECQENYDVPYKKDLNFGAKSY--SVSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSG  202 (309)
Q Consensus       139 -------------~~~~~~~~~c~~~~~~~~~~~~~~~~~~~--~v~~~~~~ik~~l~~~GPv~v~~~~-~~~f~~Y~sG  202 (309)
                                   +++......|...   +.  .....+..+  ....+.++||++|+++|||++.+.+ .++|..|++|
T Consensus        74 ~~~~~g~~~~~~~y~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~ik~~~~~~g~v~~~~~~~~~~f~~y~~g  148 (215)
T d2r6na1          74 YVQKNRGIDSEDAYPYVGQEESCMYN---PT--GKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKG  148 (215)
T ss_dssp             HHHHHTCEEBTTTSCCCSSCCCCCCC---GG--GEEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSS
T ss_pred             HHHhcCccccccCCCccccccccccc---cc--ccceeecceeeccccHHHHHHHhhcccccEEEEEEeeechhcccCCC
Confidence                         1111111111100   00  011111112  1224788999999999999988865 4678899999


Q ss_pred             eEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCC
Q psy8713         203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGD  282 (309)
Q Consensus       203 iy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~  282 (309)
                      ++..                                    ..|+...++|||+|||||++  .+.+|||||||||++|||
T Consensus       149 i~~~------------------------------------~~~~~~~~~Hav~iVGy~~~--~~~~ywivrNSWG~~WGe  190 (215)
T d2r6na1         149 VYYD------------------------------------ESCNSDNLNHAVLAVGYGIQ--KGNKHWIIKNSWGENWGN  190 (215)
T ss_dssp             EECC------------------------------------TTCCTTCCCEEEEEEEEEEE--TTEEEEEEECSBCTTSTB
T ss_pred             cccC------------------------------------CCCCCCCCCeeEEEEEeecc--CCCcEEEEEcCCCCCccc
Confidence            9984                                    34667778999999999998  778999999999999999


Q ss_pred             CceEEEEccC-CccccCcceEEE
Q psy8713         283 NGLFKILRGK-DECGIESSITAG  304 (309)
Q Consensus       283 ~Gy~~i~~g~-n~cgi~~~~~~~  304 (309)
                      +|||||+|+. |.|||++.++.+
T Consensus       191 ~Gy~~i~~~~~n~Cgi~~~~~~p  213 (215)
T d2r6na1         191 KGYILMARNKNNACGIANLASFP  213 (215)
T ss_dssp             TTEEEEESSSSSGGGTTSSCEEE
T ss_pred             CCeEEEEeCCCCcCcccCccccc
Confidence            9999999997 799999977654

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=3.1e-39  Score=283.81  Aligned_cols=175  Identities=30%  Similarity=0.481  Sum_probs=119.8

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCC--------------
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNG--------------  129 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g--------------  129 (309)
                      ||++||||++    |+|+||||||.|||||                    +.+++.+.+|.....+              
T Consensus         1 LP~~~Dwr~~----~~vtpV~dQg~cGsCwAfa~~~~~e~~~~~~~~~~~~lS~q~l~~~~~~~~~~~G~~~~~~~~~~~   76 (216)
T d1ppoa_           1 LPENVDWRKK----GAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVA   76 (216)
T ss_dssp             CCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBCCCHHHHHHHHH
T ss_pred             CCCcccCCcC----CCCCCcccCCcCchHHHHHHHHHHHHHHHHHhCCCCCccHHHHhhhhhccCccccccccccccccc
Confidence            8999999999    8999999999999999                    4455555554332110              


Q ss_pred             CCCCCCCCCCCCcccccccccCccccccccccceeeeeeecchHHHHHHHHHhcCCEEEEEecc-cccccCCCceEeCCC
Q psy8713         130 TRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVF-DDLILYKSGRFFVPG  208 (309)
Q Consensus       130 ~~~~C~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~sGiy~~~~  208 (309)
                      ..+.+.+..+|+......|.......   ..........+..+.++++++++.+|||++.+.+. +.|..|++|+|..| 
T Consensus        77 ~~G~~~e~~yPy~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~gpv~~~~~~~~~~~~~y~~g~~~~~-  152 (216)
T d1ppoa_          77 KNGIHLRSKYPYKAKQGTCRAKQVGG---PIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGP-  152 (216)
T ss_dssp             HHCBCBTTTSCCCSSCCCCCGGGCCS---CCBCCCEEEECCSSCHHHHHHHHHHSCEEEEECCCSHHHHHCCSSEECCS-
T ss_pred             ccCccccccCCccccccccccccccc---cceeeccceeecccHHHHHHHHHhhCCCceeeeeccccceecCCcccccc-
Confidence            11223333445544444443221100   01111112233333334444455679999999986 55668999999842 


Q ss_pred             CcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEEE
Q psy8713         209 NETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKI  288 (309)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~i  288 (309)
                                                          +. ..++|||+|||||++  .+++|||||||||++|||+|||||
T Consensus       153 ------------------------------------~~-~~~~Hav~iVGyg~~--~~~~ywivrNSWG~~WGd~Gy~~i  193 (216)
T d1ppoa_         153 ------------------------------------CG-TKVDHAVTAVGYGKS--GGKGYILIKNSWGTAWGEKGYIRI  193 (216)
T ss_dssp             ------------------------------------CC-SCCCEEEEEEEEEEE--TTEEEEEEECSBCSSSTBTTEEEE
T ss_pred             ------------------------------------cc-ccCCcEEEEEecccc--CCCceEEEECCCCCCcccCCEEEE
Confidence                                                22 236999999999998  789999999999999999999999


Q ss_pred             EccC----CccccCcceEEEe
Q psy8713         289 LRGK----DECGIESSITAGV  305 (309)
Q Consensus       289 ~~g~----n~cgi~~~~~~~~  305 (309)
                      +|+.    |.|||++.++.++
T Consensus       194 ~~~~~~~~~~Cgi~~~~~~p~  214 (216)
T d1ppoa_         194 KRAPGNSPGVCGLYKSSYYPT  214 (216)
T ss_dssp             ECCCSSSSCGGGTTSCCEEEE
T ss_pred             EcCCCCCCCcCccccEeeeee
Confidence            9987    4699999988654

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

Probab=100.00  E-value=1.8e-39  Score=285.56  Aligned_cols=171  Identities=29%  Similarity=0.591  Sum_probs=119.5

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCC-------
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDA-------  136 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~-------  136 (309)
                      ||++||||++    +.|+||||||.|||||                    ..+++.+..|.....  ...|.+       
T Consensus         1 LP~~~Dwr~~----~~itpV~dQg~cGsCwAfA~~~~~e~~~~~~~~~~~~lS~q~~~~c~~~~~--~~~~~G~~~~~~~   74 (218)
T d1aeca_           1 LPSYVDWRSA----GAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQN--TRGCNGGYITDGF   74 (218)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCBTT--BCTTBCCCHHHHH
T ss_pred             CCCceeCCCC----CCCCCCccCCCChhHHHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccccC--CcccCCCcccccc
Confidence            8999999999    9999999999999999                    445555555543210  111222       


Q ss_pred             ------------CCCCCcccccccccCcccccccccccee--eeeeecchHHHHHHHHHhcCCEEEEEecccccc-cCCC
Q psy8713         137 ------------SKGHTPKCVRECQENYDVPYKKDLNFGA--KSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLI-LYKS  201 (309)
Q Consensus       137 ------------~~~~~~~~~~~c~~~~~~~~~~~~~~~~--~~~~v~~~~~~ik~~l~~~GPv~v~~~~~~~f~-~Y~s  201 (309)
                                  ..+|+......|....     ....+..  .......+.+.||++|+++|||++++.+..+|. .+.+
T Consensus        75 ~~~~~~g~v~~e~~yp~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpv~v~~~~~~~~~~~~~~  149 (218)
T d1aeca_          75 QFIINNGGINTEENYPYTAQDGECNVDL-----QNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSS  149 (218)
T ss_dssp             HHHHHHTCBCBTTTSCCCSSCCCCCHHH-----HHCCCBCCCEEEECCSSCHHHHHHHHHHSCEEEEECCCSHHHHHCCS
T ss_pred             eeehhCceecCccccCcccccCccceec-----cccccceecccccccccHHHHHHHHhhcCCceeEEEecchhhhcCCC
Confidence                        1122222122111000     0011111  111233477889999999999999999886655 6677


Q ss_pred             ceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCC
Q psy8713         202 GRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWG  281 (309)
Q Consensus       202 Giy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG  281 (309)
                      |++..+                                     + ...++|||+|||||++  .+++|||||||||++||
T Consensus       150 g~~~~~-------------------------------------~-~~~~~Hav~iVGyg~~--~~~~ywivrNSWG~~WG  189 (218)
T d1aeca_         150 GIFTGP-------------------------------------C-GTAIDHAVTIVGYGTE--GGIDYWIVKNSWDTTWG  189 (218)
T ss_dssp             SEECCS-------------------------------------C-CSSCCEEEEEEEEEEE--TTEEEEEEECSBCTTST
T ss_pred             Cccccc-------------------------------------c-cccCCceeEEEEEecc--CCeEEEEEEcCCCCCcc
Confidence            777632                                     2 3345999999999998  88999999999999999


Q ss_pred             CCceEEEEcc---CCccccCcceEEEe
Q psy8713         282 DNGLFKILRG---KDECGIESSITAGV  305 (309)
Q Consensus       282 ~~Gy~~i~~g---~n~cgi~~~~~~~~  305 (309)
                      |+|||||+|+   .|.|||++.++++|
T Consensus       190 d~Gy~~i~~~~~~~~~Cgi~~~~~~~~  216 (218)
T d1aeca_         190 EEGYMRILRNVGGAGTCGIATMPSYPV  216 (218)
T ss_dssp             BTTEEEEECCCSTTCGGGTTSSCEEEE
T ss_pred             cCCEEEEEeCCCCCcccccCCcceecc
Confidence            9999999994   58999999998865

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-39  Score=282.43  Aligned_cols=174  Identities=26%  Similarity=0.565  Sum_probs=122.2

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCCC-----
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDASK-----  138 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~~-----  138 (309)
                      ||++||||++    ++||||||||.|||||                    ..|++.+..|....  ....|.++.     
T Consensus         1 LP~~~DwR~~----~~vtpV~dQG~cGsCwAfA~~~~~e~~~~~~~~~~~~lS~~~~~~~~~~~--~~~~~~gg~~~~a~   74 (221)
T d1fh0a_           1 LPKSVDWRKK----GYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ--GNQGCNGGFMARAF   74 (221)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGG--TCCGGGCCCHHHHH
T ss_pred             CCCCeeCCcC----CCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccccceeEEecccc--CCcccCCCchhhhh
Confidence            7999999999    9999999999999999                    33444444443211  112233322     


Q ss_pred             --------------CCCcccccccccCccccccccccceeeee--eecchHHHHHHHHHhcCCEEEEEecc-cccccCCC
Q psy8713         139 --------------GHTPKCVRECQENYDVPYKKDLNFGAKSY--SVSSNEKSIMKEIYEHGPVEGAFTVF-DDLILYKS  201 (309)
Q Consensus       139 --------------~~~~~~~~~c~~~~~~~~~~~~~~~~~~~--~v~~~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~s  201 (309)
                                    +|+......+....     .........+  .....+.++|++|++++||++++.+. +.|+.|++
T Consensus        75 ~~~~~~g~~~~~~~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~  149 (221)
T d1fh0a_          75 QYVKENGGLDSEESYPYVAVDEICKYRP-----ENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKS  149 (221)
T ss_dssp             HHHHHHTCEEBTTTSCCCSSCCCCCCCG-----GGEEECCSCEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCS
T ss_pred             hhhhhcCccccccCcCcccccccccccc-----ccccccceeeeecCCcHHHHHHHHHHhcCCceEEEEeccccccccCC
Confidence                          22222111111100     0011111112  22346778999999999999999886 67889999


Q ss_pred             ceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccC--CCCccEEEEEcCCCCC
Q psy8713         202 GRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDE--KSKEKYWLIANSWNTD  279 (309)
Q Consensus       202 Giy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~--~~g~~YWiikNSWG~~  279 (309)
                      |++..                                    ..+....++|+|+|||||.+.  .++.+|||||||||++
T Consensus       150 g~~~~------------------------------------~~~~~~~~~ha~~ivG~g~~~~~~~~~~ywivrNSWG~~  193 (221)
T d1fh0a_         150 GIYFE------------------------------------PDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPE  193 (221)
T ss_dssp             SEECC------------------------------------TTCCSSCCCEEEEEEEEEESSSCTTSSEEEEEECSBCTT
T ss_pred             Ccccc------------------------------------ccccccCCcccEEEeeEeccCcCCCCceEEEEEeCCCCC
Confidence            99984                                    234555679999999999642  4688999999999999


Q ss_pred             CCCCceEEEEccC-CccccCcceEEE
Q psy8713         280 WGDNGLFKILRGK-DECGIESSITAG  304 (309)
Q Consensus       280 WG~~Gy~~i~~g~-n~cgi~~~~~~~  304 (309)
                      |||+|||||+|+. |.|||++.++++
T Consensus       194 WGd~Gy~~i~~~~~n~CgI~~~~~yp  219 (221)
T d1fh0a_         194 WGSNGYVKIAKDKNNHCGIATAASYP  219 (221)
T ss_dssp             STBTTEEEEECSSSSGGGTTTSCEEE
T ss_pred             cccCCEEEEEeCCCCccccCCCcccc
Confidence            9999999999986 899999987764

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=1.3e-38  Score=278.18  Aligned_cols=170  Identities=29%  Similarity=0.550  Sum_probs=118.4

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCC--------------
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNG--------------  129 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g--------------  129 (309)
                      ||++||||++    ++|+||||||.|||||                    ..|++.+.+|.....+              
T Consensus         1 LP~~~D~R~~----~~v~pV~dQg~cGsCwAfa~~~~~e~~~~i~~~~~~~~S~q~~~~c~~~~~g~~g~~~~~a~~~~~   76 (212)
T d1khqa_           1 IPEYVDWRQK----GAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVA   76 (212)
T ss_dssp             CCSCEETTTT----TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCBCHHHHHHHHH
T ss_pred             CCCCeeCCCC----CCCCCcccCCcCchHHHHHHHHHHHHHHHHHcCCCcccCHHHhhccccccCccccccccccccccc
Confidence            7999999999    8999999999999999                    3445555555432111              


Q ss_pred             CCCCCCCCCCCCcccccccccCccccccccccceeeee-eecchHHHHHHHHHhcCCEEEEEecc-cccccCCCceEeCC
Q psy8713         130 TRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSY-SVSSNEKSIMKEIYEHGPVEGAFTVF-DDLILYKSGRFFVP  207 (309)
Q Consensus       130 ~~~~C~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~sGiy~~~  207 (309)
                      ..+.+.....|+..+...|......+    .......+ .......++++++..++||++++.+. +.|..|++|+|..|
T Consensus        77 ~~g~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~f~~~~~g~~~~~  152 (212)
T d1khqa_          77 QYGIHYRNTYPYEGVQRYCRSREKGP----YAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGP  152 (212)
T ss_dssp             HTCBCBTTTSCCCSSCCCCCTTTTCS----CSBCCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCS
T ss_pred             cccccccccCCcccccCccccccccc----ceeeeeeeeeeccccHHHHHHHHhcCCcEEEEEeecchhcccccCccccc
Confidence            11223333334443333332211111    11111222 23345566778888889999888875 67889999999842


Q ss_pred             CCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCCCceEE
Q psy8713         208 GNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFK  287 (309)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~~Gy~~  287 (309)
                                                           ++ ..++|||+|||||++      |||||||||++|||+||||
T Consensus       153 -------------------------------------~~-~~~~Hav~iVGyg~~------ywivrNSWG~~WGd~Gy~~  188 (212)
T d1khqa_         153 -------------------------------------CG-NKVDHAVAAVGYGPN------YILIKNSWGTGWGENGYIR  188 (212)
T ss_dssp             -------------------------------------CC-SCCCEEEEEEEEETT------EEEEECSBCTTSTBTTEEE
T ss_pred             -------------------------------------cc-cccCeEEEecccCCc------EEEEEcCCCCCcccCCEEE
Confidence                                                 22 246999999999976      9999999999999999999


Q ss_pred             EEccC----CccccCcceEEEe
Q psy8713         288 ILRGK----DECGIESSITAGV  305 (309)
Q Consensus       288 i~~g~----n~cgi~~~~~~~~  305 (309)
                      |+|+.    |.|||++.++.++
T Consensus       189 i~~~~~~~~~~Cgi~~~~~~p~  210 (212)
T d1khqa_         189 IKRGTGNSYGVCGLYTSSFYPV  210 (212)
T ss_dssp             EECCSCCTTCGGGTTSCCEEEE
T ss_pred             EEcCCCCCCCcCCcccEeeeec
Confidence            99987    5699999988754

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=100.00  E-value=9.7e-39  Score=281.67  Aligned_cols=174  Identities=26%  Similarity=0.558  Sum_probs=120.3

Q ss_pred             CCCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCCC----
Q psy8713          83 DLPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDASK----  138 (309)
Q Consensus        83 ~lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~~----  138 (309)
                      .||++||||++    ++|+||||||.|||||                    +.|++.+..|....   ...|.++.    
T Consensus         1 ~lP~~~Dwr~~----~~itpV~dQG~cGsCwAfA~~~~~e~~~~~~~~~~~~~S~q~l~~c~~~~---~~~~~G~~~~~a   73 (224)
T d1s4va_           1 TVPASVDWRKK----GAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ---NQGCNGGLMDYA   73 (224)
T ss_dssp             CCCSCEETTTT----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSS---CCTTBCBCHHHH
T ss_pred             CCCCceeCCCC----CCCCCCccCCcCchHHHHHHHHHHHHHHHHhcCCCCccchhhhhhccccc---cccCCCCchhhH
Confidence            38999999999    9999999999999999                    45566655664321   11222221    


Q ss_pred             ---------------CCCcccccccccCccccccccccceeeee--eecchHHHHHHHHHhcCCEEEEEecc-cccccCC
Q psy8713         139 ---------------GHTPKCVRECQENYDVPYKKDLNFGAKSY--SVSSNEKSIMKEIYEHGPVEGAFTVF-DDLILYK  200 (309)
Q Consensus       139 ---------------~~~~~~~~~c~~~~~~~~~~~~~~~~~~~--~v~~~~~~ik~~l~~~GPv~v~~~~~-~~f~~Y~  200 (309)
                                     +++..+...+..    .......+....+  ....+.+.||++|.+ +||++.+.+. ++|..|.
T Consensus        74 ~~~~~~~g~~~~e~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~-~pv~~~~~~~~~~~~~y~  148 (224)
T d1s4va_          74 FEFIKQRGGITTEANYPYEAYDGTCDV----SKENAPAVSIDGHENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYS  148 (224)
T ss_dssp             HHHHHHHTCBCBTTTSCCCSSCCCCCH----HHHTCCCBCCCEEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCC
T ss_pred             hhhHhhcCceeecccccccCcCCcccc----ccccccceeecccccccCccHHHHHHHHhc-CCceEEEEecchhhhhcc
Confidence                           111111111110    0000011111112  223467777777765 7777777764 7799999


Q ss_pred             CceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCC
Q psy8713         201 SGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDW  280 (309)
Q Consensus       201 sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~W  280 (309)
                      +|+|..                                      +....++|||+|||||++. ++++|||||||||++|
T Consensus       149 ~g~~~~--------------------------------------~~~~~~~Hav~iVGy~~~~-~g~~ywiikNSWG~~W  189 (224)
T d1s4va_         149 EGVFTG--------------------------------------SCGTELDHGVAIVGYGTTI-DGTKYWTVKNSWGPEW  189 (224)
T ss_dssp             SSEECC--------------------------------------CCCCCCCEEEEEEEEEECT-TSCEEEEEECSBCTTS
T ss_pred             CCCccC--------------------------------------cccccCCcceEEEeccccc-CCceEEEEEcCCCCcc
Confidence            999973                                      2233469999999999773 6889999999999999


Q ss_pred             CCCceEEEEccC----CccccCcceEEEeec
Q psy8713         281 GDNGLFKILRGK----DECGIESSITAGVPK  307 (309)
Q Consensus       281 G~~Gy~~i~~g~----n~cgi~~~~~~~~~~  307 (309)
                      ||+|||||+|+.    |.|||++.+++++|+
T Consensus       190 G~~Gy~~i~~g~~~~~n~CgI~~~~~yp~~~  220 (224)
T d1s4va_         190 GEKGYIRMERGISDKEGLCGIAMEASYPIKK  220 (224)
T ss_dssp             TBTTEEEEECSCSSTTCGGGTTSSCEEEECC
T ss_pred             ccCceEEEECCCCCCCCcCCccceeeeeecc
Confidence            999999999974    689999999999986

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

Probab=100.00  E-value=7.8e-38  Score=273.07  Aligned_cols=163  Identities=28%  Similarity=0.576  Sum_probs=114.9

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCCC-----
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDASK-----  138 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~~-----  138 (309)
                      ||++||||++    +.|+||||||.|||||                    +.|++.+.+|.....    .|.++.     
T Consensus         1 LP~~~D~R~~----~~vtpV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~----~~~g~~~~~~~   72 (208)
T d1o0ea_           1 LPEQIDWRKK----GAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNH----GCLGGAFVFAY   72 (208)
T ss_dssp             CCSCEEGGGG----TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSC----TTBCCCHHHHH
T ss_pred             CCCcccCccC----CCCCCcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcCHHHhhhhccCCC----CCCCccchhhh
Confidence            8999999999    8999999999999999                    445555656654211    233221     


Q ss_pred             --------------CCCcccccccccCccccccccccceeeee-eecchHHHHHHHHHhcCCEEEEEec-ccccccCCCc
Q psy8713         139 --------------GHTPKCVRECQENYDVPYKKDLNFGAKSY-SVSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSG  202 (309)
Q Consensus       139 --------------~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~v~~~~~~ik~~l~~~GPv~v~~~~-~~~f~~Y~sG  202 (309)
                                    +|+......|....       ..+....| .+....+.+++.+...+||.+.+.. ...|..|++|
T Consensus        73 ~~~~~~g~~~~~~~~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~f~~~~~g  145 (208)
T d1o0ea_          73 QYIINNGGIDTQANYPYKAVQGPCQAAS-------KVVSIDGYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSG  145 (208)
T ss_dssp             HHHHHHTCBCBTTTSCCCSSCCCCCCCC-------CCBCCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSS
T ss_pred             hhhhhcCccccccCCCCcccCCCccCcc-------cccccccccccccchhhHHHHHhhcCCceEEEEecchhhcccccC
Confidence                          12222222232111       11222222 3344455666677777888888775 5778899999


Q ss_pred             eEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCC
Q psy8713         203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGD  282 (309)
Q Consensus       203 iy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~  282 (309)
                      ||..+                                     ++ ..++|||+|||||++      |||||||||++|||
T Consensus       146 i~~~~-------------------------------------~~-~~~~Hav~iVGy~~~------ywiirNSWG~~WGd  181 (208)
T d1o0ea_         146 IFSGP-------------------------------------CG-TKLNHGVTIVGYQAN------YWIVRNSWGRYWGE  181 (208)
T ss_dssp             EECCC-------------------------------------CC-SCCCEEEEEEEECSS------EEEEECSBCTTSTB
T ss_pred             ccccc-------------------------------------cc-ccCCcEEEEEeeecc------eEEEECCCCCCccc
Confidence            99832                                     22 346999999999865      99999999999999


Q ss_pred             CceEEEEc--cCCccccCcceEEEe
Q psy8713         283 NGLFKILR--GKDECGIESSITAGV  305 (309)
Q Consensus       283 ~Gy~~i~~--g~n~cgi~~~~~~~~  305 (309)
                      +|||||+|  +.|.|||++.++.++
T Consensus       182 ~Gy~~I~~~~~~~~Cgi~~~~~~p~  206 (208)
T d1o0ea_         182 KGYIRMLRVGGCGLCGIARLPYYPT  206 (208)
T ss_dssp             TTEEEEECCSTTCGGGTTSSCEEEE
T ss_pred             CCeEEEEccCCCCccCccccceecc
Confidence            99999999  457899999988765

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

Probab=100.00  E-value=1.4e-37  Score=272.99  Aligned_cols=169  Identities=27%  Similarity=0.554  Sum_probs=119.2

Q ss_pred             CCCceecCCCCCCCCCCccccCccCCCCCc--------------------CCCccccCCCCCCCCCCCCCCCCCC-----
Q psy8713          84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW--------------------GCRPYEIAPCEHHVNGTRPSCDASK-----  138 (309)
Q Consensus        84 lP~~~DwR~~~~~cg~vtpVkdQg~CGSCW--------------------~cs~~~~~~C~~~~~g~~~~C~~~~-----  138 (309)
                      ||++||||++    +.|+||||||.|||||                    ..|++.+.+|.....    .|.++.     
T Consensus         1 LP~s~Dwr~~----~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~----~~~G~~~~~a~   72 (215)
T d1iwda_           1 LPSFVDWRSK----GAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASH----GCNGGWMNNAF   72 (215)
T ss_dssp             CCSCEEGGGG----TCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSC----TTBCCCHHHHH
T ss_pred             CCCceeCCcC----CCCCCCccCCCCchHHHHHHHHHHHHHHHHhcCCCcccChhhheecccCCC----CCCCcchhhHH
Confidence            8999999999    8999999999999999                    445555555544211    122221     


Q ss_pred             --------------CCCcccccccccCccccccccccceee-eeeecchHHHHHHHHHhcCCEEEEEecccc-cccCCCc
Q psy8713         139 --------------GHTPKCVRECQENYDVPYKKDLNFGAK-SYSVSSNEKSIMKEIYEHGPVEGAFTVFDD-LILYKSG  202 (309)
Q Consensus       139 --------------~~~~~~~~~c~~~~~~~~~~~~~~~~~-~~~v~~~~~~ik~~l~~~GPv~v~~~~~~~-f~~Y~sG  202 (309)
                                    .++......|.     . ......... ......+.++++++|...+||.+++.+..+ |..|++|
T Consensus        73 ~~~~~~g~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~g  146 (215)
T d1iwda_          73 QYIITNGGIDTQQNYPYSAVQGSCK-----P-YRLRVVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSG  146 (215)
T ss_dssp             HHHHHHTCBCBTTTSCCCSSCCCCC-----T-TCCCCBCCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSS
T ss_pred             HHHHhcCeeccccCCCccccccccc-----c-cccceeEeccccccCccHHHHHHHHHhcCCccceeeecchhhhccccC
Confidence                          01111111110     0 001111222 224445667788888889999999998755 4477889


Q ss_pred             eEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccccCCCccCCceEEEEEeeccCCCCccEEEEEcCCCCCCCC
Q psy8713         203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGD  282 (309)
Q Consensus       203 iy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiikNSWG~~WG~  282 (309)
                      +|..|                                     ++ ..++|||+|||||++  .+++|||||||||++|||
T Consensus       147 ~~~~~-------------------------------------~~-~~~~Hav~iVGyg~~--~~~~ywiirNSWG~~WGd  186 (215)
T d1iwda_         147 IFTGP-------------------------------------CG-TAQNHGVVIVGYGTQ--SGKNYWIVRNSWGQNWGN  186 (215)
T ss_dssp             EECCC-------------------------------------CC-CCCCEEEEEEEEEEE--TTEEEEEEECSBCTTSTB
T ss_pred             ccccc-------------------------------------cc-ccccceEEEEEeecC--CCceEEEEECCCCccccc
Confidence            98742                                     22 236999999999998  889999999999999999


Q ss_pred             CceEEEEccC----CccccCcceEEEee
Q psy8713         283 NGLFKILRGK----DECGIESSITAGVP  306 (309)
Q Consensus       283 ~Gy~~i~~g~----n~cgi~~~~~~~~~  306 (309)
                      +|||||+|+.    |.|||++.++++.+
T Consensus       187 ~Gy~~I~~~~~~~~~~CGi~~~~~~p~~  214 (215)
T d1iwda_         187 QGYIWMERNVASSAGLCGIAQLPSYPTK  214 (215)
T ss_dssp             TTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             CCEEEEECCCCCCCCcCCccccceeecc
Confidence            9999999986    57999999987754

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

Probab=98.93  E-value=1.7e-09  Score=103.01  Aligned_cols=108  Identities=22%  Similarity=0.239  Sum_probs=69.1

Q ss_pred             eeeeecch--HHHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceecccccc
Q psy8713         165 KSYSVSSN--EKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLIL  242 (309)
Q Consensus       165 ~~~~v~~~--~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  242 (309)
                      ..++++-+  .+.+.+.|....||..+-+|.+ ++..+.||...+.  ..+        +.-+......++-+      +
T Consensus       303 ~y~Nvp~d~lk~~~~~sL~~g~pVwfgcDV~k-~f~~k~Gi~d~~~--~~~--------~~~~~~~~~~K~~R------l  365 (458)
T d3gcba_         303 IYLNVDNETLSKLVVKRLQNNKAVFFGSHTPK-FMDKKTGVMDIEL--WNY--------PAIGYNLPQQKASR------I  365 (458)
T ss_dssp             EEEECCHHHHHHHHHHHHHTTCCEEEEECTTT-TEETTTTEECTTS--BCG--------GGGTCCCCCCHHHH------H
T ss_pred             EEeecCHHHHHHHHHHHHhcCCcEEEEecccc-ccccccccccccc--ccc--------cccCCCcccCHHHH------H
Confidence            34577643  3345556777889999999974 6788889887321  000        00001111111111      0


Q ss_pred             ccCCCccCCceEEEEEeeccCCCC-ccEEEEEcCCCCCCCCCceEEEEc
Q psy8713         243 YKSGKALGGHAIRILGWGEDEKSK-EKYWLIANSWNTDWGDNGLFKILR  290 (309)
Q Consensus       243 ~~~~~~~~~HaV~iVGyg~~~~~g-~~YWiikNSWG~~WG~~Gy~~i~~  290 (309)
                       .......+|||+|||++.+...+ ..+|+|+||||+.+|++|||.|+.
T Consensus       366 -~~~es~~tHAM~ltGv~~D~~g~~~~~w~VeNSWG~~~g~~Gy~~msd  413 (458)
T d3gcba_         366 -RYHESLMTHAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQ  413 (458)
T ss_dssp             -HTTSCCCCEEEEEEEEEECTTTCSEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             -HhCCCCCCeeEEEEEEEEcCCCCccceEEEEeccCCCCCCCceEEecH
Confidence             12334569999999998654233 369999999999999999999975

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=4.9e-08  Score=92.47  Aligned_cols=109  Identities=18%  Similarity=0.195  Sum_probs=68.3

Q ss_pred             eeeecch--HHHHHHHHHhcCCEEEEEecccccccCCCceEeCCCCcchhhhhhhhhhcccCcccCcCCcceeccccccc
Q psy8713         166 SYSVSSN--EKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILY  243 (309)
Q Consensus       166 ~~~v~~~--~~~ik~~l~~~GPv~v~~~~~~~f~~Y~sGiy~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  243 (309)
                      .++++-+  .+.+.++|.+.-||..+-+|.+ ++.-+.|+.+.  ....+-.+.+..+.      ...++-+       -
T Consensus       299 y~Nvp~d~l~~~~~~sL~~g~~VwfgcDV~k-~~~~k~Gv~d~--~~~d~~~~fg~~~~------~m~K~~R-------l  362 (453)
T d2cb5a_         299 YNNQPIDFLKKMVAASIKDGEAVWFGCDVGK-HFNSKLGLSDM--NLYDHELVFGVSLK------NMNKAER-------L  362 (453)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCCEEEEECTTT-TEETTTTEECT--TSBCHHHHHSCCSC------SSCHHHH-------H
T ss_pred             EEecCHHHHHHHHHHHHhcCCcEEEEcccch-hcchhcccccc--ccccccccccCCcc------cCCHHHH-------H
Confidence            4577642  3445567777889999999974 56667788763  11111111111110      0111100       1


Q ss_pred             cCCCccCCceEEEEEeecc-CCCCc-cEEEEEcCCCCCCCCCceEEEEc
Q psy8713         244 KSGKALGGHAIRILGWGED-EKSKE-KYWLIANSWNTDWGDNGLFKILR  290 (309)
Q Consensus       244 ~~~~~~~~HaV~iVGyg~~-~~~g~-~YWiikNSWG~~WG~~Gy~~i~~  290 (309)
                      .-+....+|||+|+|++.. ..+|. .+|+|+||||+.-|++|||.|+.
T Consensus       363 ~y~es~~tHAM~ltGv~l~dd~~G~~~~w~VENSWG~~~g~kGy~~Msd  411 (453)
T d2cb5a_         363 TFGESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTD  411 (453)
T ss_dssp             HTTSCCCCEEEEEEEEEECTTSCSCEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             HhcCcCCCceEEEEEEecccccCCCEeEEEEEccccCcCCCCceEEecH
Confidence            1234456999999999852 12555 79999999999999999999975