Psyllid ID: psy8743

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mefvppnkrsdeYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANkhcipdqeLIVLIWSTVMAQVEWNKKEELVAEQALKHLKqftplfgaftdtAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK
Flexible Loop (DISEMBL)
mefvppnkrsdeyfRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK
Low Complexity Region (SEG)
MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAqasqeakkelqeqleeqiseGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK
Disordered region (IsUnstruct)
************YFRTVFEEKGLADIVKLH************************SIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFY*
Disordered Region (DISOPRED)
MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQ**LE*****GASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEW**********ALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK
Disordered Region (DISEMBL)
MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMA****************QISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK
Disordered Region (DISPRO)
*EFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMxxxxxxxxxxxxxxxxxxxxxGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
Q9VNE2	422	Protein extra bases OS=Dr	yes	N/A	0.993	0.362	0.603	1e-49
Q6PD83	419	Basic leucine zipper and	yes	N/A	0.993	0.365	0.506	4e-41
Q5ZLT7	418	Basic leucine zipper and	yes	N/A	0.993	0.366	0.519	5e-41
Q5R7L4	419	Basic leucine zipper and	yes	N/A	0.993	0.365	0.512	2e-40
Q6P7P5	419	Basic leucine zipper and	yes	N/A	0.993	0.365	0.512	2e-40
Q9CQC6	419	Basic leucine zipper and	yes	N/A	0.993	0.365	0.512	2e-40
Q7L1Q6	419	Basic leucine zipper and	yes	N/A	0.993	0.365	0.512	2e-40
Q6P2Z0	419	Basic leucine zipper and	yes	N/A	0.993	0.365	0.474	5e-37
Q803N9	418	Basic leucine zipper and	no	N/A	0.993	0.366	0.480	1e-36
Q8AVM7	419	Basic leucine zipper and	N/A	N/A	0.993	0.365	0.454	6e-36

>sp|Q9VNE2|EXBA_DROME Protein extra bases OS=Drosophila melanogaster GN=exba PE=1 SV=1

 Score =  194 bits (494), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/154 (60%), Positives = 121/154 (78%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           M+F PPNKR++EYF+ VF +K L +IVKLH AQASQEAK+ELQ+ L + I++     +I 
Sbjct: 217 MDFFPPNKRTEEYFKQVFLDKELNEIVKLHKAQASQEAKRELQQALIDDINDEKPYNEIT 276

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
           +DI++ + +  IPD E+IV+IWST+M+  EWNKKEELV +QA++HLK + PL  AF  T 
Sbjct: 277 SDIKDFSQRTNIPDHEIIVIIWSTIMSLGEWNKKEELVTDQAVRHLKNYCPLLQAFAST- 335

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELAL+LKVQEFCYENMN M+ FQKIILLFYK
Sbjct: 336 DRSELALILKVQEFCYENMNFMKAFQKIILLFYK 369

May be involved in memory formation.
Drosophila melanogaster (taxid: 7227)

>sp|Q6PD83|BZW1A_DANRE Basic leucine zipper and W2 domain-containing protein 1-A OS=Danio rerio GN=bzw1a PE=2 SV=1

 Score =  166 bits (421), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 111/154 (72%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NKRS E+F   F + GL ++      Q S  A+KELQ++L+EQ+S G ++KDI+
Sbjct: 216 MELFPANKRSCEHFSKYFTDAGLKELSDFARNQQSIGARKELQKELQEQMSRGETLKDII 275

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
           A +RE   K  I +Q +I ++W++VM+ VEWNKKEELV EQA+KHLKQ++PL  AFT   
Sbjct: 276 AYVREEMKKTSISEQTMIGIVWTSVMSSVEWNKKEELVTEQAIKHLKQYSPLLKAFTSQG 335

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
             +EL L+LK+QE+CY+N++ M+ FQKI++L YK
Sbjct: 336 L-SELTLLLKIQEYCYDNIHFMKAFQKIVVLLYK 368

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Danio rerio (taxid: 7955)

>sp|Q5ZLT7|BZW1_CHICK Basic leucine zipper and W2 domain-containing protein 1 OS=Gallus gallus GN=BZW1 PE=2 SV=1

 Score =  166 bits (420), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 80/154 (51%), Positives = 114/154 (74%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NK+S E+F   F E GL ++ +    Q +  A+KELQ++L+EQ+S G   KDI+
Sbjct: 215 MELFPANKQSVEHFSKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 274

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             ++E   K+ I +Q +I +IWS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct: 275 LYVKEEMKKNNISEQTVIAIIWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 333

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct: 334 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 367

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Gallus gallus (taxid: 9031)

>sp|Q5R7L4|BZW1_PONAB Basic leucine zipper and W2 domain-containing protein 1 OS=Pongo abelii GN=BZW1 PE=2 SV=1

 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 114/154 (74%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NK+S E+F   F E GL ++ +    Q +  A+KELQ++L+EQ+S G   KDI+
Sbjct: 216 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 275

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct: 276 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 334

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct: 335 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 368

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Pongo abelii (taxid: 9601)

>sp|Q6P7P5|BZW1_RAT Basic leucine zipper and W2 domain-containing protein 1 OS=Rattus norvegicus GN=Bzw1 PE=2 SV=1

 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 114/154 (74%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NK+S E+F   F E GL ++ +    Q +  A+KELQ++L+EQ+S G   KDI+
Sbjct: 216 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 275

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct: 276 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 334

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct: 335 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 368

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQC6|BZW1_MOUSE Basic leucine zipper and W2 domain-containing protein 1 OS=Mus musculus GN=Bzw1 PE=1 SV=1

 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 114/154 (74%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NK+S E+F   F E GL ++ +    Q +  A+KELQ++L+EQ+S G   KDI+
Sbjct: 216 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 275

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct: 276 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 334

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct: 335 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 368

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Mus musculus (taxid: 10090)

>sp|Q7L1Q6|BZW1_HUMAN Basic leucine zipper and W2 domain-containing protein 1 OS=Homo sapiens GN=BZW1 PE=1 SV=1

 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 114/154 (74%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NK+S E+F   F E GL ++ +    Q +  A+KELQ++L+EQ+S G   KDI+
Sbjct: 216 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 275

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct: 276 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 334

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct: 335 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 368

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Homo sapiens (taxid: 9606)

>sp|Q6P2Z0|BZW1_XENTR Basic leucine zipper and W2 domain-containing protein 1 OS=Xenopus tropicalis GN=bzw1 PE=2 SV=1

 Score =  153 bits (386), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 73/154 (47%), Positives = 112/154 (72%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NK++ E+F   F + GL ++ +    Q +  A+KELQ++L+E +S G  +K+I 
Sbjct: 216 MELFPANKQTVEHFTKYFTDAGLKELAEYVRNQQTIGARKELQKELQEMMSRGEPLKEIS 275

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             +++   K+ I +Q +I ++WS+VM+ VEWNKKEELV EQA+KHLKQ++PL  AFT T 
Sbjct: 276 MYVKDEMKKNNISEQTVIGILWSSVMSCVEWNKKEELVTEQAIKHLKQYSPLLAAFT-TQ 334

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct: 335 GQSELTLLLKIQEYCYDNIHFMKSFQKIVVLFYK 368

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Xenopus tropicalis (taxid: 8364)

>sp|Q803N9|BZW1B_DANRE Basic leucine zipper and W2 domain-containing protein 1-B OS=Danio rerio GN=bzw1b PE=2 SV=2

 Score =  152 bits (383), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 108/154 (70%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NKRS E+F   F   GL +I      Q S  A+KELQ++L+EQIS G S K+I+
Sbjct: 216 MELFPVNKRSYEHFSRYFTGAGLKEISDFARNQQSLGARKELQKELQEQISLGVSFKEII 275

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
              +E   +  I +Q +I ++W+++M+ +EWNKKEELV EQA+KHLKQ +PL  AF+ T 
Sbjct: 276 DYCKEEMKRSSISEQLMIGIMWTSLMSDMEWNKKEELVTEQAIKHLKQHSPLLKAFS-TQ 334

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++EL+L+ ++QEFCY+N++ M+ FQK++LL YK
Sbjct: 335 AQSELSLLQRIQEFCYDNIHFMKTFQKMVLLLYK 368

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Danio rerio (taxid: 7955)

>sp|Q8AVM7|BZW1_XENLA Basic leucine zipper and W2 domain-containing protein 1 OS=Xenopus laevis GN=bzw1 PE=2 SV=1

 Score =  149 bits (376), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 70/154 (45%), Positives = 111/154 (72%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NK++ E+F   + + GL ++ +    Q +  A+KE+ ++L+E IS G + K+I 
Sbjct: 216 MELFPANKQTVEHFTKYYTDAGLKELAEYVRNQQTIGARKEIHKELQEMISRGEAHKEIS 275

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             +++   K+ I +Q +I ++WS++M+ VEWNKKEELV EQA+KHLKQ++PL  AFT T 
Sbjct: 276 VYVKDEMKKNNISEQTVIGILWSSIMSCVEWNKKEELVTEQAIKHLKQYSPLLAAFT-TQ 334

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct: 335 GQSELTLLLKIQEYCYDNIHFMKSFQKIVVLFYK 368

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
328708859	425	PREDICTED: protein extra bases-like isof	0.993	0.36	0.662	1e-56
326506056	425	predicted protein [Hordeum vulgare subsp	0.993	0.36	0.662	1e-56
193704713	438	PREDICTED: protein extra bases-like isof	0.993	0.349	0.662	2e-56
242018554	420	hfb2 protein, putative [Pediculus humanu	0.993	0.364	0.688	3e-56
307184506	420	Protein extra bases [Camponotus floridan	0.993	0.364	0.707	7e-56
322789621	205	hypothetical protein SINV_14753 [Solenop	0.993	0.746	0.707	1e-54
383851709	420	PREDICTED: protein extra bases-like [Meg	0.993	0.364	0.694	3e-54
307212973	452	Protein extra bases [Harpegnathos saltat	0.993	0.338	0.694	5e-54
156538142	420	PREDICTED: protein extra bases-like [Nas	0.993	0.364	0.694	8e-54
350425922	420	PREDICTED: protein extra bases-like [Bom	0.993	0.364	0.688	2e-53

>gi|328708859|ref|XP_003243818.1| PREDICTED: protein extra bases-like isoform 2 [Acyrthosiphon pisum]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 102/154 (66%), Positives = 135/154 (87%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           M+F+PPNKR++E  R  FEEKGL+D+VKLH+AQASQEAK+ L+ QL +  ++  ++K+I+
Sbjct: 224 MDFLPPNKRTEENLRAQFEEKGLSDVVKLHLAQASQEAKRNLEIQLHDDFNDNKNMKEII 283

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
           ++I+E+++KH IP+ E+IVL+W+ VM QVEWNKKEEL+A+QALKHLKQ++PLF AF+ TA
Sbjct: 284 SNIKELSSKHDIPEHEIIVLVWTVVMTQVEWNKKEELLADQALKHLKQYSPLFSAFSTTA 343

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELALMLKVQE+CYENMN MRVFQKIILLFYK
Sbjct: 344 -RSELALMLKVQEYCYENMNFMRVFQKIILLFYK 376

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326506056|dbj|BAJ91267.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 102/154 (66%), Positives = 135/154 (87%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           M+F+PPNKR++E  R  FEEKGL+D+VKLH+AQASQEAK+ L+ QL +  ++  ++K+I+
Sbjct: 224 MDFLPPNKRTEENLRAQFEEKGLSDVVKLHLAQASQEAKRNLEIQLNDDFNDNKNMKEII 283

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
           ++I+E+++KH IP+ E+IVL+W+ VM QVEWNKKEEL+A+QALKHLKQ++PLF AF+ TA
Sbjct: 284 SNIKELSSKHDIPEHEIIVLVWTVVMTQVEWNKKEELLADQALKHLKQYSPLFSAFSTTA 343

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELALMLKVQE+CYENMN MRVFQKIILLFYK
Sbjct: 344 -RSELALMLKVQEYCYENMNFMRVFQKIILLFYK 376

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|193704713|ref|XP_001943194.1| PREDICTED: protein extra bases-like isoform 1 [Acyrthosiphon pisum]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/154 (66%), Positives = 135/154 (87%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           M+F+PPNKR++E  R  FEEKGL+D+VKLH+AQASQEAK+ L+ QL +  ++  ++K+I+
Sbjct: 237 MDFLPPNKRTEENLRAQFEEKGLSDVVKLHLAQASQEAKRNLEIQLHDDFNDNKNMKEII 296

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
           ++I+E+++KH IP+ E+IVL+W+ VM QVEWNKKEEL+A+QALKHLKQ++PLF AF+ TA
Sbjct: 297 SNIKELSSKHDIPEHEIIVLVWTVVMTQVEWNKKEELLADQALKHLKQYSPLFSAFSTTA 356

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELALMLKVQE+CYENMN MRVFQKIILLFYK
Sbjct: 357 -RSELALMLKVQEYCYENMNFMRVFQKIILLFYK 389

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018554|ref|XP_002429739.1| hfb2 protein, putative [Pediculus humanus corporis] gi|212514751|gb|EEB17001.1| hfb2 protein, putative [Pediculus humanus corporis]

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 106/154 (68%), Positives = 132/154 (85%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           MEF+P NKR++E FRTVFE+KGL ++VKLH AQASQEAK++LQ QL+E +SEG  IK+I 
Sbjct: 218 MEFMPANKRTEENFRTVFEDKGLHELVKLHKAQASQEAKRDLQRQLQEALSEGKPIKEIT 277

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
            DIR+ A K+ IP+Q+++ +IWSTVMAQ EWNKKEELVAEQALKHLKQ+T LF +FT++ 
Sbjct: 278 TDIRDFAAKNHIPEQDVVAIIWSTVMAQAEWNKKEELVAEQALKHLKQYTVLFESFTNS- 336

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+EL LML++QEFCY NMN M+VFQKIILLFYK
Sbjct: 337 QRSELQLMLRIQEFCYGNMNFMKVFQKIILLFYK 370

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184506|gb|EFN70895.1| Protein extra bases [Camponotus floridanus]

 Score =  221 bits (563), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 109/154 (70%), Positives = 131/154 (85%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           MEFVPPNKR++E+FR+VFE  GLADIVKLH AQASQEAK++LQ+ L + ++E   +KDI 
Sbjct: 218 MEFVPPNKRTEEHFRSVFEAVGLADIVKLHKAQASQEAKRDLQQLLLDDLAENRPMKDIT 277

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
            D++E+A + CIP+ E+I LIW  VM Q EWNKKEELVAEQALKHLK +TPLFGAFT TA
Sbjct: 278 LDLKEMAQRSCIPEHEVIGLIWVVVMGQAEWNKKEELVAEQALKHLKTYTPLFGAFTTTA 337

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELAL+LKVQEFCYENMN M+VFQKI+LLFYK
Sbjct: 338 -RSELALILKVQEFCYENMNFMKVFQKIVLLFYK 370

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789621|gb|EFZ14836.1| hypothetical protein SINV_14753 [Solenopsis invicta]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 109/154 (70%), Positives = 130/154 (84%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           MEFVPPNKR++E+FR+VFE  GLADIVKLH AQASQEAK++LQ+ L + ++E   +KDI 
Sbjct: 3   MEFVPPNKRTEEHFRSVFEAVGLADIVKLHKAQASQEAKRDLQQLLLDDLAENRPMKDIT 62

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
            D++E+A +  IP+ E+I LIW  VM Q EWNKKEELVAEQALKHLK FTPLFGAFT TA
Sbjct: 63  LDLKEMAQRSGIPEHEVIGLIWVVVMGQAEWNKKEELVAEQALKHLKTFTPLFGAFTTTA 122

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELAL+LKVQEFCYENMN M+VFQKI+LLFYK
Sbjct: 123 -RSELALILKVQEFCYENMNFMKVFQKIVLLFYK 155

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851709|ref|XP_003701374.1| PREDICTED: protein extra bases-like [Megachile rotundata]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 107/154 (69%), Positives = 131/154 (85%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           MEFVPPNKR++EYFR+VFE  GLADIVKLH AQASQEAK++LQ+ L + + +G  +KDI+
Sbjct: 218 MEFVPPNKRTEEYFRSVFEAVGLADIVKLHKAQASQEAKRDLQQLLLDDLVDGRPMKDII 277

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
            D++E+A +  IP+ E+I LIW+ VM Q EWNKKEELVA+QALKHLK +TPLF AFT TA
Sbjct: 278 LDLKEMAQRSNIPEHEVIGLIWAVVMGQAEWNKKEELVADQALKHLKVYTPLFDAFTTTA 337

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELAL+LKVQEFCYENMN M+VFQKI+LLFYK
Sbjct: 338 -RSELALILKVQEFCYENMNFMKVFQKIVLLFYK 370

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212973|gb|EFN88555.1| Protein extra bases [Harpegnathos saltator]

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 107/154 (69%), Positives = 131/154 (85%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           MEFVPPNKR++E+FR+VFE  GLADIVKLH AQASQEAK++LQ+ L + +++   +KDI+
Sbjct: 250 MEFVPPNKRTEEHFRSVFEAVGLADIVKLHKAQASQEAKRDLQQLLLDDLADNRPMKDII 309

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
            D++E+A +  IP+ E+I LIW  VM Q EWNKKEELVAEQALKHLK +TPLFGAFT TA
Sbjct: 310 FDLKEMAQRSGIPEHEVIGLIWVVVMGQAEWNKKEELVAEQALKHLKIYTPLFGAFTTTA 369

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELAL+LKVQEFCYENMN M+VFQKI+LLFYK
Sbjct: 370 -RSELALILKVQEFCYENMNFMKVFQKIVLLFYK 402

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156538142|ref|XP_001608265.1| PREDICTED: protein extra bases-like [Nasonia vitripennis]

 Score =  214 bits (545), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 107/154 (69%), Positives = 132/154 (85%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           MEFVPPNKR+DEYFR+VFE   LADIVKLH AQASQEAK++LQ+ L + +++   IKDIV
Sbjct: 218 MEFVPPNKRTDEYFRSVFENADLADIVKLHKAQASQEAKRDLQDLLLDDLADQKPIKDIV 277

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
           +D++E+A +  IP+ ++I LIW+ VM Q EWNKKEELVAEQALKHLK +TPLFGAF +TA
Sbjct: 278 SDLKEMAQRCNIPEHDIIGLIWNVVMGQAEWNKKEELVAEQALKHLKIYTPLFGAFANTA 337

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++ELAL+LKVQEFCYENMN M+VFQKI+LLFYK
Sbjct: 338 -KSELALILKVQEFCYENMNFMKVFQKIVLLFYK 370

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425922|ref|XP_003494274.1| PREDICTED: protein extra bases-like [Bombus impatiens]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/154 (68%), Positives = 129/154 (83%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           MEFVPPNKR++EYFR+VFE  GLADIVKLH AQASQEAK++LQ+ L + +++   +KDI+
Sbjct: 218 MEFVPPNKRTEEYFRSVFEAVGLADIVKLHKAQASQEAKRDLQQLLLDDLADNRPLKDII 277

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
            D++E+A K  IP+ E+I LIW  VM Q EWNKKEELVA+QALKHLK +TPLF  FT TA
Sbjct: 278 LDLKEMAQKSGIPEHEVIGLIWVVVMGQAEWNKKEELVADQALKHLKIYTPLFDVFTTTA 337

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELAL+LKVQEFCYENMN M+VFQKI+LLFYK
Sbjct: 338 -RSELALLLKVQEFCYENMNFMKVFQKIVLLFYK 370

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
FB|FBgn0250753	422	exba "extra bases" [Drosophila	0.993	0.362	0.525	1.3e-38
UNIPROTKB|F1NDS7	421	BZW1 "Basic leucine zipper and	0.993	0.363	0.454	4.7e-32
UNIPROTKB|Q5ZLT7	418	BZW1 "Basic leucine zipper and	0.993	0.366	0.454	4.7e-32
UNIPROTKB|F6V4W0	451	BZW1 "Uncharacterized protein"	0.993	0.339	0.448	9.8e-32
UNIPROTKB|Q7L1Q6	419	BZW1 "Basic leucine zipper and	0.993	0.365	0.448	9.8e-32
UNIPROTKB|F1SI55	419	BZW1 "Uncharacterized protein"	0.993	0.365	0.448	9.8e-32
MGI|MGI:1914132	419	Bzw1 "basic leucine zipper and	0.993	0.365	0.448	9.8e-32
RGD|735129	419	Bzw1 "basic leucine zipper and	0.993	0.365	0.448	9.8e-32
ZFIN|ZDB-GENE-030131-3951	419	bzw1a "basic leucine zipper an	0.993	0.365	0.435	5.4e-31
UNIPROTKB|F1MZK4	452	BZW1 "Uncharacterized protein"	0.993	0.338	0.445	8.8e-31

FB|FBgn0250753 exba "extra bases" [Drosophila melanogaster (taxid:7227)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 81/154 (52%), Positives = 104/154 (67%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             M+F PPNKR++EYF+ VF +K L +IVKLH A                         +I 
Sbjct:   217 MDFFPPNKRTEEYFKQVFLDKELNEIVKLHKAQASQEAKRELQQALIDDINDEKPYNEIT 276

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             +DI++ + +  IPD E+IV+IWST+M+  EWNKKEELV +QA++HLK + PL  AF  T 
Sbjct:   277 SDIKDFSQRTNIPDHEIIVIIWSTIMSLGEWNKKEELVTDQAVRHLKNYCPLLQAFAST- 335

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
              R+ELAL+LKVQEFCYENMN M+ FQKIILLFYK
Sbjct:   336 DRSELALILKVQEFCYENMNFMKAFQKIILLFYK 369

GO:0048663 "neuron fate commitment" evidence=IMP

GO:0007616 "long-term memory" evidence=IMP;TAS

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0043022 "ribosome binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0017148 "negative regulation of translation" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0031369 "translation initiation factor binding" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0048149 "behavioral response to ethanol" evidence=IMP

UNIPROTKB|F1NDS7 BZW1 "Basic leucine zipper and W2 domain-containing protein 1" [Gallus gallus (taxid:9031)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 70/154 (45%), Positives = 98/154 (63%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NK+S E+F   F E GL ++ +                        G   KDI+
Sbjct:   218 MELFPANKQSVEHFSKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 277

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
               ++E   K+ I +Q +I +IWS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct:   278 LYVKEEMKKNNISEQTVIAIIWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 336

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
              ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct:   337 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 370

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5ZLT7 BZW1 "Basic leucine zipper and W2 domain-containing protein 1" [Gallus gallus (taxid:9031)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 70/154 (45%), Positives = 98/154 (63%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NK+S E+F   F E GL ++ +                        G   KDI+
Sbjct:   215 MELFPANKQSVEHFSKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 274

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
               ++E   K+ I +Q +I +IWS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct:   275 LYVKEEMKKNNISEQTVIAIIWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 333

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
              ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct:   334 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 367

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F6V4W0 BZW1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 69/154 (44%), Positives = 98/154 (63%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NK+S E+F   F E GL ++ +                        G   KDI+
Sbjct:   248 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 307

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
               ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct:   308 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 366

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
              ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct:   367 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 400

GO:0016070 "RNA metabolic process" evidence=IEA

UNIPROTKB|Q7L1Q6 BZW1 "Basic leucine zipper and W2 domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 69/154 (44%), Positives = 98/154 (63%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NK+S E+F   F E GL ++ +                        G   KDI+
Sbjct:   216 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 275

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
               ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct:   276 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 334

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
              ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct:   335 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 368

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1SI55 BZW1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 69/154 (44%), Positives = 98/154 (63%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NK+S E+F   F E GL ++ +                        G   KDI+
Sbjct:   216 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 275

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
               ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct:   276 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 334

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
              ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct:   335 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 368

GO:0005737 "cytoplasm" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

MGI|MGI:1914132 Bzw1 "basic leucine zipper and W2 domains 1" [Mus musculus (taxid:10090)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 69/154 (44%), Positives = 98/154 (63%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NK+S E+F   F E GL ++ +                        G   KDI+
Sbjct:   216 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 275

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
               ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct:   276 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 334

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
              ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct:   335 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 368

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016070 "RNA metabolic process" evidence=IEA

RGD|735129 Bzw1 "basic leucine zipper and W2 domains 1" [Rattus norvegicus (taxid:10116)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 69/154 (44%), Positives = 98/154 (63%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NK+S E+F   F E GL ++ +                        G   KDI+
Sbjct:   216 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 275

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
               ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct:   276 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 334

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
              ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct:   335 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 368

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-030131-3951 bzw1a "basic leucine zipper and W2 domains 1a" [Danio rerio (taxid:7955)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 67/154 (43%), Positives = 95/154 (61%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NKRS E+F   F + GL ++                          G ++KDI+
Sbjct:   216 MELFPANKRSCEHFSKYFTDAGLKELSDFARNQQSIGARKELQKELQEQMSRGETLKDII 275

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             A +RE   K  I +Q +I ++W++VM+ VEWNKKEELV EQA+KHLKQ++PL  AFT   
Sbjct:   276 AYVREEMKKTSISEQTMIGIVWTSVMSSVEWNKKEELVTEQAIKHLKQYSPLLKAFTSQG 335

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
               +EL L+LK+QE+CY+N++ M+ FQKI++L YK
Sbjct:   336 -LSELTLLLKIQEYCYDNIHFMKAFQKIVVLLYK 368

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1MZK4 BZW1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 69/155 (44%), Positives = 98/155 (63%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NK+S E+F   F E GL ++ +                        G   KDI+
Sbjct:   248 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 307

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLK-QFTPLFGAFTDT 119
               ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLK Q++PL  AFT T
Sbjct:   308 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKKQYSPLLAAFT-T 366

Query:   120 APRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
               ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct:   367 QGQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 401

GO:0005737 "cytoplasm" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VNE2	EXBA_DROME	No assigned EC number	0.6038	0.9935	0.3625	yes	N/A
Q9CQC6	BZW1_MOUSE	No assigned EC number	0.5129	0.9935	0.3651	yes	N/A
Q5R7L4	BZW1_PONAB	No assigned EC number	0.5129	0.9935	0.3651	yes	N/A
Q6PD83	BZW1A_DANRE	No assigned EC number	0.5064	0.9935	0.3651	yes	N/A
Q7L1Q6	BZW1_HUMAN	No assigned EC number	0.5129	0.9935	0.3651	yes	N/A
Q5ZLT7	BZW1_CHICK	No assigned EC number	0.5194	0.9935	0.3660	yes	N/A
Q6P7P5	BZW1_RAT	No assigned EC number	0.5129	0.9935	0.3651	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	154
cd11560	194	cd11560, W2_eIF5C_like, C-terminal W2 domain of th	3e-71
cd11473	135	cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/	1e-05
smart00515	83	smart00515, eIF5C, Domain at the C-termini of GCD6	0.001
pfam02020	75	pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon	0.002

>gnl|CDD|211398 cd11560, W2_eIF5C_like, C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins

 Score =  212 bits (541), Expect = 3e-71
 Identities = 80/153 (52%), Positives = 116/153 (75%), Gaps = 1/153 (0%)

Query: 2   EFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVA 61
           EF PPNKR++E+F   F+E+GL ++V+ +  QASQE KKELQ++L+E I+E   +K+I+A
Sbjct: 1   EFFPPNKRTEEHFAEHFKEEGLDELVEFYRKQASQEIKKELQQELKEMIAEEEPVKEIIA 60

Query: 62  DIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAP 121
            ++E   K  +P+ E++ L+W+ +M  VEW+KKE+ +AEQAL+HLK++ PL  AF  T  
Sbjct: 61  AVKEQMKKSSLPEHEVVGLLWTALMDAVEWSKKEDQIAEQALRHLKKYAPLLAAFC-TTA 119

Query: 122 RAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
           RAELAL+ K+QE+CYENM  M+VFQKI+ L YK
Sbjct: 120 RAELALLNKIQEYCYENMKFMKVFQKIVKLLYK 152

eIF5C appears to be essential for the initiation of protein translation; its actual function, and specifically that of the C-terminal W2 domain, are not well understood. The Drosophila ortholog, kra (krasavietz) or exba (extra bases), may be involved in translational inhibition in neural development. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats. Length = 194

>gnl|CDD|211395 cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/eIF2b-epsilon

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 4/120 (3%)

Query: 39  KKELQEQLEEQISEGAS-IKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNK-KEE 96
            K+L++ L +++ E  S   + V   +   +   I  +E++ ++ + V+  VE       
Sbjct: 3   NKKLRDSLLKELEEDKSSDVESVKAAKSKLDLDPISLEEVVKVLLTAVVNAVESADSISL 62

Query: 97  LVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMN--LMRVFQKIILLFYK 154
              EQ +  LK++ P+         + +L L+LK+++ C +     L+ + +KI+ L Y 
Sbjct: 63  TQKEQLVLVLKKYGPVLRELLKLIKKDQLYLLLKIEKLCLQLKLSELISLLEKILDLLYD 122

This domain is found at the C-terminus of several translation initiation factors, including the epsilon chain of eIF2b, where it has been found to catalyze the conversion of eIF2.GDP to its active eIF2.GTP form. The structure of the domain resembles that of a set of concatenated HEAT repeats. Length = 135

>gnl|CDD|214705 smart00515, eIF5C, Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 111 PLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFY 153
           PL   F       +L L+  ++EFC E   L ++  KI+   Y
Sbjct: 2   PLL-KFLAKDEEEQLELLYAIEEFCVELEKLGKLLPKILKSLY 43

Length = 83

>gnl|CDD|216850 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 122 RAELALMLKVQEFCY-ENMNLMRVFQKIILLFYK 154
            A+  L+  ++ FC  EN  L+++  KI+ L Y 
Sbjct: 1   DAQKDLLGALERFCGKENPELIKLLPKILKLLYD 34

This domain of unknown function is found at the C-terminus of several translation initiation factors. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
KOG2297|consensus	412		100.0
KOG1461|consensus	673		99.71
smart00515	83	eIF5C Domain at the C-termini of GCD6, eIF-2B epsi	98.83
PF02020	84	W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003	98.1
KOG2767|consensus	400		96.16
PF09090	253	MIF4G_like_2: MIF4G like; InterPro: IPR015174 This	94.82
KOG1104|consensus	759		85.71

>KOG2297|consensus

Probab=100.00  E-value=4e-57  Score=381.49  Aligned_cols=153  Identities=52%  Similarity=0.935  Sum_probs=151.7

Q ss_pred             CCCCCCCCCCHHHHHHHHhhcCchhHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHH
Q psy8743           1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVL   80 (154)
Q Consensus         1 ~~ffP~~kRs~~~~~~~f~~~gL~~l~~~~~~~~~~~~~kel~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi~~   80 (154)
                      |+||||||||.|||.+||+++||.+|++|+++|++++.+||+++.|++++++|.|.++||..||+.++.+|+||++||++
T Consensus       216 meffPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~i  295 (412)
T KOG2297|consen  216 MEFFPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGI  295 (412)
T ss_pred             HHhcCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhccchHHHHHHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHhHhhhhhhHHHHHHHHhhcC
Q psy8743          81 IWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK  154 (154)
Q Consensus        81 iw~~lM~~vews~k~~~~~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kIl~~LY~  154 (154)
                      ||+++|++|+||++++++++||+||+|+|+|||++||+++ ++|++||+|||+|||||++|||+||+||++||+
T Consensus       296 vWs~iMsaveWnKkeelva~qalrhlK~yaPLL~af~s~g-~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk  368 (412)
T KOG2297|consen  296 VWSGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFCSQG-QSELELLLKVQEYCYENIHFMKAFQKIVVLFYK  368 (412)
T ss_pred             eHhhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhcCC-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999 999999999999999999999999999999995

>KOG1461|consensus

Probab=99.71  E-value=1.1e-16  Score=145.16  Aligned_cols=118  Identities=19%  Similarity=0.390  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhh---ccchHHHHHHHHHHHHhhHhh
Q psy8743          35 SQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVE---WNKKEELVAEQALKHLKQFTP  111 (154)
Q Consensus        35 ~~~~~kel~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi~~iw~~lM~~ve---ws~k~~~~~e~a~~~lkk~~p  111 (154)
                      ...|++|+.++|+|++++++..+.++++||+++.++|++.+||+++++.++|+.+.   .|+-.+ ...++++.+++|+|
T Consensus       505 ~~~F~~Ev~~s~~ra~Een~~~D~~vlEINslRla~N~s~~ev~~av~~all~~~~~~~~~~~~~-~~~~~~~~~~~w~~  583 (673)
T KOG1461|consen  505 TKDFEKEVLGSLQRAFEENSDMDNLVLEINSLRLAYNVSLKEVAGAVFMALLKLILHQDHSSMNE-VKRAALKVFTQWGP  583 (673)
T ss_pred             hHHHHHHHHHHHHHHHHhccchHHHHHHHhhhHHhhcCCHHHHHHHHHHHHHHHHhcCCCccchh-HHHHHHHHHHHhhH
Confidence            45799999999999999999999999999999999999999999999999999983   444333 67799999999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHhHhhhhhhHHHHHHHHhhcC
Q psy8743         112 LFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK  154 (154)
Q Consensus       112 LL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kIl~~LY~  154 (154)
                      |++.+.++. +.|+++|++++++|.|+..+.+.|.+++++||+
T Consensus       584 l~~~y~ks~-deqid~l~~led~~~e~~~~~~~~~~~v~~lY~  625 (673)
T KOG1461|consen  584 LLGNYIKSE-DEQIDLLLALEDKCVESEELGPKAAKLVHYLYD  625 (673)
T ss_pred             HhhhhhhhH-HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            999999999 999999999999999998889999999999995

>smart00515 eIF5C Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5

Probab=98.83  E-value=5e-09  Score=72.82  Aligned_cols=44  Identities=25%  Similarity=0.586  Sum_probs=42.1

Q ss_pred             hhHHHHhcCCCcHHHHHHHHHHHHHhHhhhhhhHHHHHHHHhhcC
Q psy8743         110 TPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK  154 (154)
Q Consensus       110 ~pLL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kIl~~LY~  154 (154)
                      +|||++|+++. ++|+++|+.+|.+|+++...++.|++|++.|||
T Consensus         1 ~~ll~~~~~~~-~~q~~~L~ale~~~~~~~~~~~~~~~il~~LYd   44 (83)
T smart00515        1 GPLLKFLAKDE-EEQIDLLYAIEEFCVELEKLIKLLPKILKSLYD   44 (83)
T ss_pred             ChHHHHHHCCh-HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhh
Confidence            58999999999 999999999999999988889999999999996

>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []

Probab=98.10  E-value=2.8e-06  Score=59.21  Aligned_cols=33  Identities=39%  Similarity=0.720  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhHHHHHHHHhhcC
Q psy8743         122 RAELALMLKVQEFCYENMNLMRVFQKIILLFYK  154 (154)
Q Consensus       122 ~~ql~LL~kvQ~~Cye~~~~mk~F~kIl~~LY~  154 (154)
                      ++|+++|..+|.||+++.++++.|+.|++.||+
T Consensus         2 ~~Q~~~L~ale~~~~~~~~~~~~~~~il~~LYd   34 (84)
T PF02020_consen    2 DDQVDLLNALEEFCAENPNLMPLFPKILQQLYD   34 (84)
T ss_dssp             HHHHHHHHHHHHHHHHTCGHGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhh
Confidence            689999999999999999999999999999996

The W2 domain has a globular fold and is exclusively composed out of alpha-helices [, , ]. The structure can be divided into a structural C-terminal core onto which the two N-terminal helices are attached. The core contains two aromatic/acidic residue-rich regions (AA boxes), which are important for mediating protein-protein interactions. For example, the W2 domain of H. sapiens eIF5 binds eIF2-beta, eIF3 and eIF1 [], and therefore plays an important role in multifactor complex assembly. The entry covers the entire W2 domain.; GO: 0005488 binding; PDB: 3D3M_A 3L6A_A 1PAQ_A 2FUL_D 2IU1_A 1UG3_B 3JUI_A.

>KOG2767|consensus

Probab=96.16  E-value=0.052  Score=47.59  Aligned_cols=56  Identities=18%  Similarity=0.301  Sum_probs=49.9

Q ss_pred             HHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHhHhh-hhhhHHHHHHHHhhcC
Q psy8743          99 AEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYEN-MNLMRVFQKIILLFYK  154 (154)
Q Consensus        99 ~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~Cye~-~~~mk~F~kIl~~LY~  154 (154)
                      .+...+.|.++.++|.+||+++.+.|..||.-|+.+|.-. ..+++.-+.||+.|||
T Consensus       290 ~e~ivkei~k~~~~l~k~~~~~~k~qr~LLggiE~~~~~~~~el~~kva~ilk~lYd  346 (400)
T KOG2767|consen  290 DEKIVKEILKHRALLLKFCTNNEKAQRYLLGGIERFVEKHEAELISKVAGILKELYD  346 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            4567799999999999999996699999999999999885 4568999999999996

>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain

Probab=94.82  E-value=0.34  Score=39.99  Aligned_cols=93  Identities=16%  Similarity=0.235  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCC----hHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhhHhhHHHHh-
Q psy8743          42 LQEQLEEQISEGASIKDIVADIREIANKHCIP----DQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAF-  116 (154)
Q Consensus        42 l~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~----~~evi~~iw~~lM~~vews~k~~~~~e~a~~~lkk~~pLL~~F-  116 (154)
                      +.+.|.+++....|++++...+++.....+-+    +.-++.++++|++...  |   .... -+...|.+|.+.|..+ 
T Consensus        13 ~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~G--S---kS~S-H~~~~lery~~~Lk~l~   86 (253)
T PF09090_consen   13 LAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIG--S---KSFS-HVLSALERYKEVLKELE   86 (253)
T ss_dssp             HHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHT--T---TSHH-HHHHHHHHTHHHHHHH-
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhc--C---chHH-HHHHHHHHHHHHHHHhc
Confidence            66778899988888888888777666554432    2347888888888765  1   2233 6677899999999999 


Q ss_pred             cCCCcHHHHHHHHHHHHHhHhhhhh
Q psy8743         117 TDTAPRAELALMLKVQEFCYENMNL  141 (154)
Q Consensus       117 ~~~~~~~ql~LL~kvQ~~Cye~~~~  141 (154)
                      +.+. ..|..+|..+-.|.-.++.+
T Consensus        87 ~~~~-~~q~~il~~v~~~W~~~~q~  110 (253)
T PF09090_consen   87 AESE-EAQFWILDAVFRFWKNNPQM  110 (253)
T ss_dssp             TSSH-HHHHHHHHHHHHHHTT-HHH
T ss_pred             cCCh-HHHHHHHHHHHHHHhcCCce
Confidence            8888 99999999999998887655

MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.

>KOG1104|consensus

Probab=85.71  E-value=4.1  Score=38.97  Aligned_cols=92  Identities=17%  Similarity=0.227  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhhHhhHHHHhcCCC
Q psy8743          42 LQEQLEEQISEGASIKDIVADIREIANKHCIPD-QELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA  120 (154)
Q Consensus        42 l~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~-~evi~~iw~~lM~~vews~k~~~~~e~a~~~lkk~~pLL~~F~~~~  120 (154)
                      +..++..++..-.++++++.++|+--.+...+. .=.|+++.+++++..  |+.   .. -+...+.+|..+|+++|-+.
T Consensus       502 ~~~~l~~~~~~k~~~e~~~~iLk~~~~~~~~~~n~~~i~lfvq~~l~lG--SKS---fS-H~f~~lek~~~vfk~l~~~~  575 (759)
T KOG1104|consen  502 VAVQLIVAFREKATAEEIVNILKSEDESEIGSFNRLKIILFVQTLLDLG--SKS---FS-HAFSALEKYHTVFKKLCEDS  575 (759)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHhcCccccccCCcceehhhHHHHHHHhc--cch---hh-hHHHHHHHHHHHHHHHhcCC
Confidence            467899999999999999999993222222222 336788888998886  222   11 34778889999999999999


Q ss_pred             cHHHHHHHHHHHHHhHhhh
Q psy8743         121 PRAELALMLKVQEFCYENM  139 (154)
Q Consensus       121 ~~~ql~LL~kvQ~~Cye~~  139 (154)
                      ...|+.+|..|=++.-.|.
T Consensus       576 e~~q~~vl~~vft~Wk~n~  594 (759)
T KOG1104|consen  576 ETKQIIVLEAVFTFWKANP  594 (759)
T ss_pred             chhHHHHHHHHHHHHhcCc
Confidence            3449999999999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	154
3jui_A	182	Translation initiation factor EIF-2B subunit EPSI;	3e-17
1ug3_A	339	EIF4GI, eukaryotic protein synthesis initiation fa	1e-14
3d3m_A	168	Eukaryotic translation initiation factor 4 gamma 2	2e-14
3l6a_A	364	Eukaryotic translation initiation factor 4 gamma;	4e-11
1paq_A	189	Translation initiation factor EIF-2B epsilon subun	1e-08
2iu1_A	208	EIF5, eukaryotic translation initiation factor 5;	1e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} Length = 182

 Score = 73.5 bits (180), Expect = 3e-17
 Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 35  SQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKK 94
            +  + E+   L+    E  S  ++V +I  +   + I  +E++ ++   V+        
Sbjct: 11  IKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMD 70

Query: 95  EELVA----EQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIIL 150
             L +       L  LK ++P+F  +        L  +  +++F  E+  L     K+++
Sbjct: 71  SPLDSSRYCALLLPLLKAWSPVFRNYIKR-AADHLEALAAIEDFFLEHEALGISMAKVLM 129

Query: 151 LFYK 154
            FY+
Sbjct: 130 AFYQ 133

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339

 Score = 68.7 bits (167), Expect = 1e-14
 Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 6/154 (3%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
            EF+P  +    +      E  L +  +           +EL  QLE+ + EG+S + + 
Sbjct: 172 KEFLPEGQDIGAFVAEQKVEYTLGEESE--APGQRALPSEELNRQLEKLLKEGSSNQRVF 229

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             I    ++  I    L+  + + V          E      +  LK    L   +    
Sbjct: 230 DWIEANLSEQQIVSNTLVRALMTAVC---YSAIIFETPLRVDVAVLKARAKLLQKYLCD- 285

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            + EL  +  +Q           + +      Y 
Sbjct: 286 EQKELQALYALQALVVTLEQPPNLLRMFFDALYD 319

>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} Length = 168

 Score = 65.9 bits (160), Expect = 2e-14
 Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 16/129 (12%)

Query: 40  KELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVM------------- 86
            +L+++L +QI    S + I   I++  +     D+  + ++ ++ +             
Sbjct: 2   LKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDE 61

Query: 87  -AQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVF 145
                   KE+L  E+ L  L  F P+   F       +++ +  +Q  CY +     + 
Sbjct: 62  TDSSSAPSKEQLEQEKQL--LLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGML 119

Query: 146 QKIILLFYK 154
            +  + FY 
Sbjct: 120 LRFFVHFYD 128

>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364

 Score = 58.4 bits (140), Expect = 4e-11
 Identities = 25/166 (15%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
            + +P   ++ +    + E KGL+ +  L           +L+++L +QI    S + I 
Sbjct: 169 QKMLPEIDQNKDRMLEILEGKGLSFLFPLL----------KLEKELLKQIKLDPSPQTIY 218

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQV------------EWNKKEELVAEQALKHLKQ 108
             I++  +     D+  + ++ ++ +  +              +   +   EQ  + L  
Sbjct: 219 KWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLS 278

Query: 109 FTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
           F P+   F       +++ +  +Q  CY +     +  +  + FY 
Sbjct: 279 FKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYD 324

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14 Length = 189

 Score = 50.8 bits (121), Expect = 1e-08
 Identities = 14/118 (11%), Positives = 38/118 (32%), Gaps = 5/118 (4%)

Query: 40  KELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVA 99
           KE    +E  +     +   + ++  +     +   E+ +   + ++ +V      + + 
Sbjct: 24  KEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLG 83

Query: 100 --EQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENM--NLMRVFQKIILLFY 153
             +  +K   Q+  LF           + LM  + E   E        +    ++  Y
Sbjct: 84  PKDAVVKVFNQWGLLFKRQAFD-EEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLY 140

>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens} Length = 208

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 73  PDQELIVLIWSTVMAQVEWN-KKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKV 131
            D+E++       +  +      E L  E+  + +K++   F  F     +A+  L+  +
Sbjct: 28  SDKEIVAEAERLDVKAMGPLVLTEVLFNEKIREQIKKYRRHFLRFCHNNKKAQRYLLHGL 87

Query: 132 QEFC-YENMNLMRVFQKIILLFYK 154
           +         L+     I+   Y 
Sbjct: 88  ECVVAMHQAQLISKIPHILKEMYD 111

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 14/37 (37%)

Query: 100 EQALKH----LKQFTPLFGAFTDTAPRAELALMLKVQ 132
           +QALK     LK +        D+AP    AL +K  
Sbjct: 19  KQALKKLQASLKLYAD------DSAP----ALAIKAT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
1ug3_A	339	EIF4GI, eukaryotic protein synthesis initiation fa	99.96
3l6a_A	364	Eukaryotic translation initiation factor 4 gamma;	99.94
1paq_A	189	Translation initiation factor EIF-2B epsilon subun	99.94
3jui_A	182	Translation initiation factor EIF-2B subunit EPSI;	99.93
3d3m_A	168	Eukaryotic translation initiation factor 4 gamma 2	99.87
2ful_A	177	EIF-5, eukaryotic translation initiation factor 5;	99.35
2iu1_A	208	EIF5, eukaryotic translation initiation factor 5;	98.96
1h2v_C	771	80 kDa nuclear CAP binding protein; CAP-binding-co	94.43

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14

Probab=99.96  E-value=1.6e-29  Score=213.74  Aligned_cols=145  Identities=17%  Similarity=0.213  Sum_probs=125.6

Q ss_pred             CCCCCCCCCCHHHHHHHHhhcCchhHHHHHHHhhHH--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHH
Q psy8743           1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQ--EAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELI   78 (154)
Q Consensus         1 ~~ffP~~kRs~~~~~~~f~~~gL~~l~~~~~~~~~~--~~~kel~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi   78 (154)
                      ++|||+++|    +.++|+++||+++++|+.++.++  ...+|++++|.+++++|.++++|+.+||+.+.++++++++|+
T Consensus       172 ~~f~P~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~~i~~~~~~~~~~~~~~~  247 (339)
T 1ug3_A          172 KEFLPEGQD----IGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLV  247 (339)
T ss_dssp             GGTSCTTCC----HHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCHHHHTCHHHH
T ss_pred             HHhCCCchh----HHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhcCChhhCChHHHH
Confidence            479999998    88999999999999999988877  578899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh-hhccchHHHHHHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHhHhhhhhhHHHHHHHHhhcC
Q psy8743          79 VLIWSTVMAQ-VEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK  154 (154)
Q Consensus        79 ~~iw~~lM~~-vews~k~~~~~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kIl~~LY~  154 (154)
                      +++|+++|++ ++|++..    ....+++++|+|||.+|+++. ++|+++|+++|++||++.+.+++|.+|++.|||
T Consensus       248 ~~l~~a~~~~~~~~~~~~----~~~~~~l~~~~pll~~~~~~~-~~ql~~L~alQ~~~~~~~~~~~~l~~~~~~LYd  319 (339)
T 1ug3_A          248 RALMTAVCYSAIIFETPL----RVDVAVLKARAKLLQKYLCDE-QKELQALYALQALVVTLEQPPNLLRMFFDALYD  319 (339)
T ss_dssp             HHHHHHHHHHTEECSSSC----EECHHHHHHHHHHHHHHCCSH-HHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhccChHHHHHHHHHHHhC
Confidence            9999999998 5886532    233488999999999999988 999999999999999999999999999999996

>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}

Probab=99.94  E-value=2.9e-27  Score=202.71  Aligned_cols=142  Identities=20%  Similarity=0.342  Sum_probs=126.8

Q ss_pred             CCCCCCCCCCHHHHHHHHhhcCchhHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHH
Q psy8743           1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVL   80 (154)
Q Consensus         1 ~~ffP~~kRs~~~~~~~f~~~gL~~l~~~~~~~~~~~~~kel~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi~~   80 (154)
                      ++|||+++|+.++|.++|+++||++|+++.          +++++|.+++.+|.++++|+.+||+.+.+..++++++|++
T Consensus       169 ~~FlPe~~~~~~~~~e~~~~~~L~~l~~~~----------~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~  238 (364)
T 3l6a_A          169 QKMLPEIDQNKDRMLEILEGKGLSFLFPLL----------KLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNI  238 (364)
T ss_dssp             GGGSCGGGCSHHHHHHHHHHHTCGGGCHHH----------HHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHH
T ss_pred             HHhCCccccchhHHHHHHHhCCCcccCCHH----------HHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHH
Confidence            379999999999999999999999999754          6999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh--hcc------------chHHHHHHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHhHhhhhhhHHHH
Q psy8743          81 IWSTVMAQV--EWN------------KKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQ  146 (154)
Q Consensus        81 iw~~lM~~v--ews------------~k~~~~~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~  146 (154)
                      +|+++|++|  +||            +|+++..  ..+.|++|+|||.+|+++..+.|+++|+.+|.+|++......+|+
T Consensus       239 L~t~v~~~~~~~~~~~~~~~d~~~~~~k~~~~~--~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~~~~~~~~l~  316 (364)
T 3l6a_A          239 LMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQ--EKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLL  316 (364)
T ss_dssp             HHHHHHHHHHHHHC----------CCCHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HHHHHHHHHHHhcccccccccccccccHHHHHH--HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhccccHHHHH
Confidence            999999999  566            2455554  346899999999999999824599999999999999655567889


Q ss_pred             HHHHhhcC
Q psy8743         147 KIILLFYK  154 (154)
Q Consensus       147 kIl~~LY~  154 (154)
                      +|++.|||
T Consensus       317 ~il~~LYd  324 (364)
T 3l6a_A          317 RFFVHFYD  324 (364)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999996

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14

Probab=99.94  E-value=8e-27  Score=184.06  Aligned_cols=119  Identities=12%  Similarity=0.166  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhh-hccchHHH-HHHHHHHHHhhHhhH
Q psy8743          35 SQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQV-EWNKKEEL-VAEQALKHLKQFTPL  112 (154)
Q Consensus        35 ~~~~~kel~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi~~iw~~lM~~v-ews~k~~~-~~e~a~~~lkk~~pL  112 (154)
                      ...|++|++++|.|++++|+++++|+.+||++++++|+|++||+++||.|+|+++ +|++++.+ ..+++.++|++|+||
T Consensus        19 ~~~F~~Ev~~sL~r~~~e~~~~d~iilEin~lr~a~n~s~~ev~~~v~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~l   98 (189)
T 1paq_A           19 DEDFEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLL   98 (189)
T ss_dssp             --CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence            3469999999999999999999999999999999999999999999999999999 89987655 778999999999999


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHhH--hhhhhhHHHHHHHHhhcC
Q psy8743         113 FGAFTDTAPRAELALMLKVQEFCY--ENMNLMRVFQKIILLFYK  154 (154)
Q Consensus       113 L~~F~~~~~~~ql~LL~kvQ~~Cy--e~~~~mk~F~kIl~~LY~  154 (154)
                      |.+||++. +.|+.+|+.+|.||+  ++.++++.|++|++.|||
T Consensus        99 l~~~~~~~-~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd  141 (189)
T 1paq_A           99 FKRQAFDE-EEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYD  141 (189)
T ss_dssp             GGGTCCSH-HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHcCc-HHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhcc
Confidence            99999998 999999999999999  899999999999999995

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0

Probab=99.93  E-value=1.5e-25  Score=176.11  Aligned_cols=119  Identities=18%  Similarity=0.311  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhh--hccc--hHHHHHHHHHHHHhhHh
Q psy8743          35 SQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQV--EWNK--KEELVAEQALKHLKQFT  110 (154)
Q Consensus        35 ~~~~~kel~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi~~iw~~lM~~v--ews~--k~~~~~e~a~~~lkk~~  110 (154)
                      ...|.+|+.++|.|++++|+++++++.+||++++++|+|++||+++||.|+|+++  .|++  ......+++.+.|++|+
T Consensus        11 ~~~F~~Ev~~sl~ra~~e~~~~d~~~LEinslr~a~N~s~~eV~~av~~ail~~~~~~~~~~~~~~~~~~a~~~~i~~~~   90 (182)
T 3jui_A           11 IKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWS   90 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGGGCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhcccccChhhHHHHHHHHHHHHH
Confidence            3568899999999999999999999999999999999999999999999999998  3665  45677779999999999


Q ss_pred             hHHHHhcCCCcHHHHHHHHHHHHHhHhhhhhhHHHHHHHHhhcC
Q psy8743         111 PLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK  154 (154)
Q Consensus       111 pLL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kIl~~LY~  154 (154)
                      |||.+||++. +.|+++|+.+|.+|+++..+++.|++|++.|||
T Consensus        91 ~ll~~~~~~~-~~q~~lL~ale~~~~~~~~~~~~~~~il~~LYd  133 (182)
T 3jui_A           91 PVFRNYIKRA-ADHLEALAAIEDFFLEHEALGISMAKVLMAFYQ  133 (182)
T ss_dssp             HHHHHHCCSH-HHHHHHHHHHHHHHHHCGGGGGGHHHHHHHHHH
T ss_pred             HHHHHHhCCH-HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhh
Confidence            9999999999 999999999999999999999999999999996

>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}

Probab=99.87  E-value=5.7e-22  Score=153.47  Aligned_cols=113  Identities=19%  Similarity=0.316  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhhc--cc-hHH--H-------HHHHHHHHHhh
Q psy8743          41 ELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEW--NK-KEE--L-------VAEQALKHLKQ  108 (154)
Q Consensus        41 el~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi~~iw~~lM~~vew--s~-k~~--~-------~~e~a~~~lkk  108 (154)
                      +++++|.+++++|.++++|+.+|++.....++|++||++++|+|+|+++.|  ++ +.+  +       +.+++.++|++
T Consensus         3 ~~~~~L~~~l~~~~~~~~i~~~i~en~~~~~~s~~ev~~al~~avl~~i~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~   82 (168)
T 3d3m_A            3 KLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLS   82 (168)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHSCGGGGGCHHHHHHHHHHHHHHHHHHHSCCC-------CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHhccccccccccccccchhHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999988  43 322  2       45799999999


Q ss_pred             HhhHHHHhcCC-CcHHHHHHHHHHHHHhHhhhhhhHHHHHHHHhhcC
Q psy8743         109 FTPLFGAFTDT-APRAELALMLKVQEFCYENMNLMRVFQKIILLFYK  154 (154)
Q Consensus       109 ~~pLL~~F~~~-~~~~ql~LL~kvQ~~Cye~~~~mk~F~kIl~~LY~  154 (154)
                      |+|+|.+|+++ . ++|+++|+.+|.+|+++..+++.|++|++.|||
T Consensus        83 ~~~ll~~~~~~~~-~~q~~lL~alq~~~~~~~~~~~~~~~il~~LYd  128 (168)
T 3d3m_A           83 FKPVMQKFLHDHV-DLQVSALYALQVHCYNSNFPKGMLLRFFVHFYD  128 (168)
T ss_dssp             HHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCH-HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhh
Confidence            99999999996 6 999999999999999998999999999999996

>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}

Probab=99.35  E-value=7.3e-13  Score=103.63  Aligned_cols=69  Identities=16%  Similarity=0.340  Sum_probs=63.6

Q ss_pred             ChHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHh-HhhhhhhHHHHHHHHh
Q psy8743          73 PDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC-YENMNLMRVFQKIILL  151 (154)
Q Consensus        73 ~~~evi~~iw~~lM~~vews~k~~~~~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~C-ye~~~~mk~F~kIl~~  151 (154)
                      ..++++.++|.++|+.            ++.++|++|+|||.+||++. ++|+.+|+.+|.+| +++.++++.|++|++.
T Consensus        48 ~~~~~~~vl~~~lf~~------------~i~~~l~k~~~lL~~~~~~~-~~q~~lL~ale~~~~~~~~~~~~~~~~IL~~  114 (177)
T 2ful_A           48 NDPKIGCVLAQCLFDE------------DIVNEIAEHNAFFTKILVTP-EYEKNFMGGIERFLGLEHKDLIPLLPKILVQ  114 (177)
T ss_dssp             TCTTHHHHHHHHSCST------------THHHHTTSCHHHHHHHCCSH-HHHHHHHHHHHHHHHTTCGGGGGGHHHHHHH
T ss_pred             hhhHHHHHHHHHHhch------------hHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence            3489999999999962            57789999999999999988 99999999999999 7899999999999999


Q ss_pred             hcC
Q psy8743         152 FYK  154 (154)
Q Consensus       152 LY~  154 (154)
                      ||+
T Consensus       115 LYd  117 (177)
T 2ful_A          115 LYN  117 (177)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            995

>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}

Probab=98.96  E-value=1.5e-09  Score=86.78  Aligned_cols=67  Identities=12%  Similarity=0.219  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhhHhhHHHHhcC-CCcHHHHHHHHHHHHHh-HhhhhhhHHHHHHHHhh
Q psy8743          75 QELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTD-TAPRAELALMLKVQEFC-YENMNLMRVFQKIILLF  152 (154)
Q Consensus        75 ~evi~~iw~~lM~~vews~k~~~~~e~a~~~lkk~~pLL~~F~~-~~~~~ql~LL~kvQ~~C-ye~~~~mk~F~kIl~~L  152 (154)
                      +....++..++++.            ++.++|++|+|||.+||+ +. ++|+.+|+.+|.+| ++++.+++.|++|++.|
T Consensus        43 ~~~~~vl~e~lf~~------------~i~~~l~k~~~lL~~~~~~~~-~~Q~~lL~alE~~~~~~~~~~~~~~~~IL~~L  109 (208)
T 2iu1_A           43 AMGPLVLTEVLFNE------------KIREQIKKYRRHFLRFCHNNK-KAQRYLLHGLECVVAMHQAQLISKIPHILKEM  109 (208)
T ss_dssp             GGHHHHHHHHHCST------------THHHHHHHTHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            45555666666633            567899999999999998 66 99999999999996 56678999999999999


Q ss_pred             cC
Q psy8743         153 YK  154 (154)
Q Consensus       153 Y~  154 (154)
                      |+
T Consensus       110 YD  111 (208)
T 2iu1_A          110 YD  111 (208)
T ss_dssp             HH
T ss_pred             hc
Confidence            95

>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*

Probab=94.43  E-value=0.15  Score=47.37  Aligned_cols=101  Identities=14%  Similarity=0.247  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhhcC-------CC-hHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhhHhhHH
Q psy8743          42 LQEQLEEQISEGASIKDIVADIREIANKHC-------IP-DQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLF  113 (154)
Q Consensus        42 l~~~l~~~i~~~~~~~~ii~~ik~~~~~~~-------~~-~~evi~~iw~~lM~~vews~k~~~~~e~a~~~lkk~~pLL  113 (154)
                      +.+.|..++.+..++++|+..+++......       .+ +...+.++|++++...  |+   ... -+...|.+|.++|
T Consensus       481 ~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~v~~q~ll~~G--sk---S~S-H~~~~lery~~~l  554 (771)
T 1h2v_C          481 VALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLA--AK---SFS-HSFSALAKFHEVF  554 (771)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHGGGCC-------------CCHHHHHHHHHHHHHHS--TT---CHH-HHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHhchhcccccccccccccchHHHHHHHHHHHHhc--cc---hHH-HHHHHHHHHHHHH
Confidence            567788889888999999999988332211       11 1258889999999775  22   223 5677899999999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHhHhhhhh-hHHHHHHH
Q psy8743         114 GAFTDTAPRAELALMLKVQEFCYENMNL-MRVFQKII  149 (154)
Q Consensus       114 ~~F~~~~~~~ql~LL~kvQ~~Cye~~~~-mk~F~kIl  149 (154)
                      ..++.++ ..|+.+|..+-.|.-.+... .-+.-|.+
T Consensus       555 k~l~~~~-~~q~~il~~v~~~W~~~~q~~~ividkll  590 (771)
T 1h2v_C          555 KTLAESD-EGKLHVLRVMFEVWRNHPQMIAVLVDKMI  590 (771)
T ss_dssp             HHHTSSH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHcCCH-HHHHHHHHHHHHHHhcCCceEehHHHHHH
Confidence            9999998 99999999999999888654 34444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	154
d1ug3a2	127	a.118.1.14 (A:1438-1564) Eukaryotic initiation fac	2e-17
d1paqa_	161	a.118.1.14 (A:) Translation initiation factor eIF-	6e-11

>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (175), Expect = 2e-17
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 4/117 (3%)

Query: 38  AKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEEL 97
             +EL  QLE+ + EG+S + +   I    ++  I    L+  + + V       +    
Sbjct: 3   PSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLVRALMTAVCYSAIIFETPL- 61

Query: 98  VAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
                +  LK    L   +     + EL  +  +Q           + +      Y 
Sbjct: 62  --RVDVAVLKARAKLLQKYLCD-EQKELQALYALQALVVTLEQPPNLLRMFFDALYD 115

>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Translation initiation factor eIF-2b epsilon
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (133), Expect = 6e-11
 Identities = 13/122 (10%), Positives = 39/122 (31%), Gaps = 5/122 (4%)

Query: 37  EAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEE 96
           + +KE    +E  +     +   + ++  +     +   E+ +   + ++ +V      +
Sbjct: 1   DFEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQ 60

Query: 97  LVA--EQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCY--ENMNLMRVFQKIILLF 152
            +   +  +K   Q+  LF           + LM  + E            +    ++  
Sbjct: 61  TLGPKDAVVKVFNQWGLLFKRQAFD-EEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSL 119

Query: 153 YK 154
           Y 
Sbjct: 120 YD 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d1paqa_	161	Translation initiation factor eIF-2b epsilon {Bake	99.91
d1ug3a2	127	Eukaryotic initiation factor eIF4G {Human (Homo sa	99.86
d1h2vc3	310	CBP80, 80KDa nuclear cap-binding protein {Human (H	95.98

>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Translation initiation factor eIF-2b epsilon
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=7e-25  Score=166.86  Aligned_cols=117  Identities=12%  Similarity=0.118  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhhccch--HHHHHHHHHHHHhhHhhHHH
Q psy8743          37 EAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKK--EELVAEQALKHLKQFTPLFG  114 (154)
Q Consensus        37 ~~~kel~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi~~iw~~lM~~vews~k--~~~~~e~a~~~lkk~~pLL~  114 (154)
                      +|.+|+.++|.|++++|+++++++.+||++++++|+|++||+++||.|+|+.+.+..+  .....+.+.+.|++|+|||.
T Consensus         1 eF~~Ev~~sl~r~~ee~~~~dn~iLElnslr~a~N~~~~dv~~av~~All~~i~~~~~~~~~~~~~~~~~~l~k~~~ll~   80 (161)
T d1paqa_           1 DFEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLFK   80 (161)
T ss_dssp             CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHGGGGG
T ss_pred             ChHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Confidence            3789999999999999999999999999999999999999999999999999954433  23345688899999999999


Q ss_pred             HhcCCCcHHHHHHHHHHHHHhHhh--hhhhHHHHHHHHhhcC
Q psy8743         115 AFTDTAPRAELALMLKVQEFCYEN--MNLMRVFQKIILLFYK  154 (154)
Q Consensus       115 ~F~~~~~~~ql~LL~kvQ~~Cye~--~~~mk~F~kIl~~LY~  154 (154)
                      +|+++. ++|+++|+.+|+||+++  ++.+++|++|++.|||
T Consensus        81 ~~~~~~-~~q~~~L~~lq~~c~~~~~~~~~~~~~~il~~lY~  121 (161)
T d1paqa_          81 RQAFDE-EEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYD  121 (161)
T ss_dssp             GTCCSH-HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHcCCc-HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHh
Confidence            999999 99999999999999964  4679999999999996

>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.5e-22  Score=148.75  Aligned_cols=112  Identities=17%  Similarity=0.186  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhhHhhHHHHhcC
Q psy8743          39 KKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTD  118 (154)
Q Consensus        39 ~kel~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~~~evi~~iw~~lM~~vews~k~~~~~e~a~~~lkk~~pLL~~F~~  118 (154)
                      .+++++.|.+++++|.++++|+.+|++.+.+++++++++|+++|.++|.++.+.+..   .+.+.+++++|+|||.+|++
T Consensus         4 ~~~l~~~L~~~l~e~~~~~~i~~wIk~~~~~~~~~~~~~i~aL~~~v~~~~~~~~~~---~~~~~~~l~k~~~ll~~~~~   80 (127)
T d1ug3a2           4 SEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLVRALMTAVCYSAIIFETP---LRVDVAVLKARAKLLQKYLC   80 (127)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHHHTEECSSS---CEECHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHHHccCc---HHHHHHHHHHHHHHHHHHhC
Confidence            467999999999999999999999999999999999999999999999887433321   23446789999999999999


Q ss_pred             CCcHHHHHHHHHHHHHhHhhhhhhHHHHHHHHhhcC
Q psy8743         119 TAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK  154 (154)
Q Consensus       119 ~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kIl~~LY~  154 (154)
                      +. +.|+.+|+.+|+|||++.+.+++|++|++.|||
T Consensus        81 ~~-~~ql~~L~~lQ~~~~~~~~~~~~~~~i~~~LYd  115 (127)
T d1ug3a2          81 DE-QKELQALYALQALVVTLEQPPNLLRMFFDALYD  115 (127)
T ss_dssp             SH-HHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             Cc-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence            99 999999999999999999999999999999996

>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: CBP80, 80KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.015  Score=46.65  Aligned_cols=93  Identities=13%  Similarity=0.211  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCC--------hHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhhHhhHH
Q psy8743          42 LQEQLEEQISEGASIKDIVADIREIANKHCIP--------DQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLF  113 (154)
Q Consensus        42 l~~~l~~~i~~~~~~~~ii~~ik~~~~~~~~~--------~~evi~~iw~~lM~~vews~k~~~~~e~a~~~lkk~~pLL  113 (154)
                      +.+.|..++..-.++++|+.+|++......-.        ..=.+.+++++++...  |+   ... -+...|.+|+++|
T Consensus        20 ~a~~L~~~ir~K~~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~vfvqtll~~G--SK---SfS-H~~~~lery~~~l   93 (310)
T d1h2vc3          20 VALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLA--AK---SFS-HSFSALAKFHEVF   93 (310)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHGGGCC-------------CCHHHHHHHHHHHHHHS--TT---CHH-HHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHc--cc---hHH-HHHHHHHHHHHHH
Confidence            66789999998899999999987753322111        1236888999998775  22   222 5667889999999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHhHhhhhh
Q psy8743         114 GAFTDTAPRAELALMLKVQEFCYENMNL  141 (154)
Q Consensus       114 ~~F~~~~~~~ql~LL~kvQ~~Cye~~~~  141 (154)
                      ...+.+. ..|..+|..|-.|.-.+...
T Consensus        94 k~l~~~~-~~q~~il~~v~~~W~~~~q~  120 (310)
T d1h2vc3          94 KTLAESD-EGKLHVLRVMFEVWRNHPQM  120 (310)
T ss_dssp             HHHTSSH-HHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCH-HHHHHHHHHHHHHHhcCCcc
Confidence            9999999 99999999999998887654