Psyllid ID: psy8885

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MIDKGNGYVRLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDPKSILPTTTPLRLVHKYILYYVIPLCNHKCTIANSILSQQYVAWSQTLRLEKKLRRLFRQKEESTRRLSNIIA
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccccccccEEEEEEEEccccEEEEEEEEccccEEEEcccccHHEHHHHHccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccEEEEccccEEccccccEEcHHHEEEEEEEcccccEEEEEEcccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
midkgngyVRLMVKKVAKEgynftfgnesvSTFVTAFYDAVILYSIALNEtiamggsqsdgsaITRRMWnrtyqdpksilptttplrLVHKYILYYVIplcnhkctiANSILSQQYVAWSQTLRLEKKLRRLFRQKEESTRRLSNIIA
Flexible Loop (DISEMBL)
midkgngyvRLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRtyqdpksilptttpLRLVHKYILYYVIPLCNHKCTIANSILSQQYVAWSQTLRLEKKLrrlfrqkeestrrlsniia
Low Complexity Region (SEG)
MIDKGNGYVRLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDPKSILPTTTPLRLVHKYILYYVIPLCNHKCTIANSILSQQYVAWSQTlrlekklrrlfrqkeeSTRRLSNIIA
Disordered region (IsUnstruct)
******GYVRLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGG*****SAITRRMWNRTYQDPKSILPTTTPLRLVHKYILYYVIPLCNHKCTIANSILSQQYVAWSQTLRLEKKLRRL****************
Disordered Region (DISOPRED)
***KGNGYVRLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDPKSILPTTTPLRLVHKYILYYVIPLCNHKCTIANSILSQQYVAWSQTLR******************LSNI**
Disordered Region (DISEMBL)
MIDKGNGYVRLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDPKSILPTTTPLRLVHKYILYYVIPLCNHKCTIANSILSQQYVAWSQTLRLEKKLRRLFRQ*************
Disordered Region (DISPRO)
*IDKGNGYVRLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDPKSILPTTTPLRLVHKYILYYVIPLCNHKCTIANSILSQQYVAWSQTLRLEKKLRRLFRQKEEST*****II*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIDKGNGYVRLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDPKSILPTTTPLRLVHKYILYYVIPLCNHKCTIANSILSQQYVAWSQTLRLEKKLRRLFRQKEESTRRLSNIIA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
P16066	1061	Atrial natriuretic peptid	yes	N/A	0.418	0.058	0.451	2e-10
P18293	1057	Atrial natriuretic peptid	yes	N/A	0.418	0.058	0.403	8e-09
P18910	1057	Atrial natriuretic peptid	yes	N/A	0.418	0.058	0.403	1e-08
P17342	541	Atrial natriuretic peptid	no	N/A	0.378	0.103	0.406	6e-07
P41740	535	Atrial natriuretic peptid	no	N/A	0.378	0.104	0.406	1e-06
P55202	1050	Atrial natriuretic peptid	N/A	N/A	0.594	0.083	0.326	1e-06
P70180	536	Atrial natriuretic peptid	no	N/A	0.378	0.104	0.406	2e-06
P10730	537	Atrial natriuretic peptid	no	N/A	0.304	0.083	0.444	6e-06
P20594	1047	Atrial natriuretic peptid	no	N/A	0.425	0.060	0.353	7e-06
P16067	1047	Atrial natriuretic peptid	no	N/A	0.425	0.060	0.338	3e-05

>sp|P16066|ANPRA_HUMAN Atrial natriuretic peptide receptor 1 OS=Homo sapiens GN=NPR1 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 44/62 (70%)

Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
           +K +A E +NFT  +  V+T   +F+D ++LY  A+ ET+A GG+ +DG  IT+RMWNR+
Sbjct: 329 LKHLAYEQFNFTMEDGLVNTIPASFHDGLLLYIQAVTETLAHGGTVTDGENITQRMWNRS 388

Query: 73  YQ 74
           +Q
Sbjct: 389 FQ 390

Receptor for the atrial natriuretic peptide NPPA/ANP and the brain natriuretic peptide NPPB/BNP which are potent vasoactive hormones playing a key role in cardiovascular homeostasis. Has guanylate cyclase activity upon binding of the ligand.
Homo sapiens (taxid: 9606)
EC: 4EC: .EC: 6EC: .EC: 1EC: .EC: 2

>sp|P18293|ANPRA_MOUSE Atrial natriuretic peptide receptor 1 OS=Mus musculus GN=Npr1 PE=2 SV=2

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 42/62 (67%)

Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
           +K +A + +NFT  +   +    +F+D ++LY  A+ ET+A GG+ +DG  IT+RMWNR+
Sbjct: 325 LKLLADKKFNFTMEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRS 384

Query: 73  YQ 74
           +Q
Sbjct: 385 FQ 386

Receptor for the atrial natriuretic peptide NPPA/ANP and the brain natriuretic peptide NPPB/BNP which are potent vasoactive hormones playing a key role in cardiovascular homeostasis. Has guanylate cyclase activity upon binding of the ligand.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P18910|ANPRA_RAT Atrial natriuretic peptide receptor 1 OS=Rattus norvegicus GN=Npr1 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 42/62 (67%)

Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
           +K +A + +NFT  +   +    +F+D ++LY  A+ ET+A GG+ +DG  IT+RMWNR+
Sbjct: 325 LKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRS 384

Query: 73  YQ 74
           +Q
Sbjct: 385 FQ 386

Receptor for the atrial natriuretic peptide NPPA/ANP and the brain natriuretic peptide NPPB/BNP which are potent vasoactive hormones playing a key role in cardiovascular homeostasis. Has guanylate cyclase activity upon binding of the ligand.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P17342|ANPRC_HUMAN Atrial natriuretic peptide receptor 3 OS=Homo sapiens GN=NPR3 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 3/59 (5%)

Query: 16  VAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQ 74
           V K+G N     + V+ FV  F+DA++LY +AL+E +  G S+ DG  I ++ WNRT++
Sbjct: 343 VEKQGLNM---EDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFE 398

Receptor for the natriuretic peptide hormones, binding with similar affinities atrial natriuretic peptide NPPA/ANP, brain natriuretic peptide NPPB/BNP, and C-type natriuretic peptide NPPC/CNP. May function as a clearance receptor for NPPA, NPPB and NPPC, regulating their local concentrations and effects. May regulate diuresis, blood pressure and skeletal development. Does not have guanylate cyclase activity.

Homo sapiens (taxid: 9606)

>sp|P41740|ANPRC_RAT Atrial natriuretic peptide receptor 3 OS=Rattus norvegicus GN=Npr3 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 3/59 (5%)

Query: 16  VAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQ 74
           V K+G N     + V+ FV  F+DA++LY +AL+E +  G S+ DG  I ++ WNRT++
Sbjct: 338 VEKQGLN---EEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFE 393

Receptor for the natriuretic peptide hormones, binding with similar affinities atrial natriuretic peptide NPPA/ANP, brain natriuretic peptide NPPB/BNP, and C-type natriuretic peptide NPPC/CNP. May function as a clearance receptor for NPPA, NPPB and NPPC, regulating their local concentrations and effects. May regulate diuresis, blood pressure and skeletal development. Does not have guanylate cyclase activity.

Rattus norvegicus (taxid: 10116)

>sp|P55202|ANPRB_ANGJA Atrial natriuretic peptide receptor 2 OS=Anguilla japonica GN=npr2 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 7/95 (7%)

Query: 36  AFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDPKSILPTTTPLRLVHKYILY 95
            FYD  +LY+ ALNET+A GGSQ+DG  IT++M NR +     ++ T    +   + I +
Sbjct: 339 CFYDGFMLYAQALNETLAEGGSQNDGINITQKMQNRRFWGVTGLVSTD---KNNDRDIDF 395

Query: 96  YVIPLCNHKC----TIANSILSQQYVAWSQTLRLE 126
            +  + NHK      +A    + + + WS+T +++
Sbjct: 396 NLWAMTNHKTGQYGIVAYYNGTNKEIVWSETEKIQ 430

Receptor for the C-type natriuretic peptide NPPC/CNP hormone. Has guanylate cyclase activity upon binding of its ligand. May play a role in the regulation of skeletal growth.

Anguilla japonica (taxid: 7937)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P70180|ANPRC_MOUSE Atrial natriuretic peptide receptor 3 OS=Mus musculus GN=Npr3 PE=1 SV=3

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 3/59 (5%)

Query: 16  VAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQ 74
           V K+G N     + V+ FV  F+DA++LY +AL+E +  G S+ DG  I ++ WNRT++
Sbjct: 338 VEKQGLN---EEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFE 393

Receptor for the natriuretic peptide hormones, binding with similar affinities atrial natriuretic peptide NPPA/ANP, brain natriuretic peptide NPPB/BNP, and C-type natriuretic peptide NPPC/CNP. May function as a clearance receptor for NPPA, NPPB and NPPC, regulating their local concentrations and effects. May regulate diuresis, blood pressure and skeletal development. Does not have guanylate cyclase activity.

Mus musculus (taxid: 10090)

>sp|P10730|ANPRC_BOVIN Atrial natriuretic peptide receptor 3 OS=Bos taurus GN=NPR3 PE=1 SV=2

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 30  VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQ 74
           V+ FV  F+DA++LY +AL E +  G S+ DG  I ++ WNRT++
Sbjct: 350 VNMFVEGFHDAILLYVLALREVLRAGYSKKDGGKIIQQTWNRTFE 394

Receptor for the natriuretic peptide hormones, binding with similar affinities atrial natriuretic peptide NPPA/ANP, brain natriuretic peptide NPPB/BNP, and C-type natriuretic peptide NPPC/CNP. May function as a clearance receptor for NPPA, NPPB and NPPC, regulating their local concentrations and effects. May regulate diuresis, blood pressure and skeletal development. Does not have guanylate cyclase activity.

Bos taurus (taxid: 9913)

>sp|P20594|ANPRB_HUMAN Atrial natriuretic peptide receptor 2 OS=Homo sapiens GN=NPR2 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 10  RLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMW 69
           RL+++  A+E +    G   ++     FYD ++LY+  LNETI  GG++ DG  I  +M 
Sbjct: 312 RLLIR--AREDFGVELGPSLMNLIAGCFYDGILLYAEVLNETIQEGGTREDGLRIVEKMQ 369

Query: 70  NRTYQ 74
            R Y 
Sbjct: 370 GRRYH 374

Receptor for the C-type natriuretic peptide NPPC/CNP hormone. Has guanylate cyclase activity upon binding of its ligand. May play a role in the regulation of skeletal growth.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P16067|ANPRB_RAT Atrial natriuretic peptide receptor 2 OS=Rattus norvegicus GN=Npr2 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 10  RLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMW 69
           RL+++  A+E +        ++     FYD ++LY+  LNETI  GG++ DG  I  +M 
Sbjct: 312 RLLIR--AREDFGVELAPSLMNLIAGCFYDGILLYAQVLNETIQEGGTREDGLRIVEKMQ 369

Query: 70  NRTYQ 74
            R Y 
Sbjct: 370 GRRYH 374

Receptor for the C-type natriuretic peptide NPPC/CNP hormone. Has guanylate cyclase activity upon binding of its ligand. May play a role in the regulation of skeletal growth.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
242014720	664	Guanylate cyclase 32E precursor, putativ	0.418	0.093	0.661	7e-18
321461543	1050	hypothetical protein DAPPUDRAFT_201000 [	0.412	0.058	0.557	6e-14
291229636	1035	PREDICTED: natriuretic peptide receptor	0.418	0.059	0.580	1e-13
340725323	1453	PREDICTED: atrial natriuretic peptide re	0.418	0.042	0.578	5e-13
350403823	1453	PREDICTED: atrial natriuretic peptide re	0.418	0.042	0.578	6e-13
345493253	1322	PREDICTED: atrial natriuretic peptide re	0.418	0.046	0.578	7e-13
328783669	1436	PREDICTED: atrial natriuretic peptide re	0.418	0.043	0.578	1e-12
380016320	1351	PREDICTED: atrial natriuretic peptide re	0.418	0.045	0.578	1e-12
307212159	555	Atrial natriuretic peptide receptor A [H	0.418	0.111	0.562	2e-12
332029271	867	Atrial natriuretic peptide receptor A [A	0.418	0.071	0.546	7e-12

>gi|242014720|ref|XP_002428033.1| Guanylate cyclase 32E precursor, putative [Pediculus humanus corporis] gi|212512552|gb|EEB15295.1| Guanylate cyclase 32E precursor, putative [Pediculus humanus corporis]

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 57/62 (91%)

Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
           VK++A++ YN++FG++SVSTF+TAFYDAVILYS+ALNE+I  GGS+ +G+ ITRRMWNRT
Sbjct: 228 VKELAEKNYNYSFGDDSVSTFITAFYDAVILYSLALNESIREGGSEVNGNDITRRMWNRT 287

Query: 73  YQ 74
           ++
Sbjct: 288 FK 289

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321461543|gb|EFX72574.1| hypothetical protein DAPPUDRAFT_201000 [Daphnia pulex]

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 50/61 (81%)

Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
           VK++A+E +N+T+  + V+ FV AF++AV+LY+IALNET+A GG  S+G+AIT RMW RT
Sbjct: 322 VKRIAREEFNYTYDEDPVNPFVAAFHEAVLLYAIALNETLAAGGDVSNGTAITSRMWGRT 381

Query: 73  Y 73
           +
Sbjct: 382 F 382

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291229636|ref|XP_002734779.1| PREDICTED: natriuretic peptide receptor 1-like [Saccoglossus kowalevskii]

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 48/62 (77%)

Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
           VK+ AK  YNFT+ ++ V+ FV AF+DAVILY++ALNET+A G    +G  ITRRMWNRT
Sbjct: 283 VKRRAKRDYNFTYEDDVVNNFVGAFHDAVILYALALNETLAAGEDPRNGMKITRRMWNRT 342

Query: 73  YQ 74
           ++
Sbjct: 343 FE 344

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|340725323|ref|XP_003401021.1| PREDICTED: atrial natriuretic peptide receptor 1-like [Bombus terrestris]

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 48/64 (75%), Gaps = 2/64 (3%)

Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAM--GGSQSDGSAITRRMWN 70
           VK +A+  YNFTFGN SVSTFVTAFYDAV+LY++AL E++     G   DG  +TRRMW 
Sbjct: 478 VKSLAQTKYNFTFGNNSVSTFVTAFYDAVLLYALALKESLPEYPDGVNLDGGNLTRRMWG 537

Query: 71  RTYQ 74
           R+++
Sbjct: 538 RSFR 541

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403823|ref|XP_003486915.1| PREDICTED: atrial natriuretic peptide receptor 1-like [Bombus impatiens]

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 48/64 (75%), Gaps = 2/64 (3%)

Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAM--GGSQSDGSAITRRMWN 70
           VK +A+  YNFTFGN SVSTFVTAFYDAV+LY++AL E++     G   DG  +TRRMW 
Sbjct: 478 VKSLAQTKYNFTFGNNSVSTFVTAFYDAVLLYALALKESLPEYPDGVNLDGGNLTRRMWG 537

Query: 71  RTYQ 74
           R+++
Sbjct: 538 RSFR 541

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493253|ref|XP_001603765.2| PREDICTED: atrial natriuretic peptide receptor 2-like [Nasonia vitripennis]

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 48/64 (75%), Gaps = 2/64 (3%)

Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIA--MGGSQSDGSAITRRMWN 70
           VK +A+  YNFTFGN SVSTFVTAFYDAV+LY++AL E++    G    DG  +TRRMW 
Sbjct: 476 VKSLAQSRYNFTFGNSSVSTFVTAFYDAVLLYALALKESLPDKPGEVNLDGGNLTRRMWG 535

Query: 71  RTYQ 74
           R+++
Sbjct: 536 RSFK 539

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783669|ref|XP_001121839.2| PREDICTED: atrial natriuretic peptide receptor 1-like [Apis mellifera]

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 49/64 (76%), Gaps = 2/64 (3%)

Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAM--GGSQSDGSAITRRMWN 70
           VK +A+  YNFTFG++SVSTFVTAFYDAVILY++AL E++    G    DG  +TRRMW 
Sbjct: 476 VKSLAQTKYNFTFGSDSVSTFVTAFYDAVILYALALKESLPEHPGRVNLDGGDLTRRMWG 535

Query: 71  RTYQ 74
           R+++
Sbjct: 536 RSFK 539

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016320|ref|XP_003692135.1| PREDICTED: atrial natriuretic peptide receptor 1-like [Apis florea]

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 48/64 (75%), Gaps = 2/64 (3%)

Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAM--GGSQSDGSAITRRMWN 70
           VK +A+  YNFTFG  SVSTFVTAFYDAVILY++ALNE++    G    DG  +TR+MW 
Sbjct: 545 VKALAQNRYNFTFGTNSVSTFVTAFYDAVILYALALNESLPKHPGRVNLDGGDLTRKMWG 604

Query: 71  RTYQ 74
           R+++
Sbjct: 605 RSFK 608

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212159|gb|EFN88013.1| Atrial natriuretic peptide receptor A [Harpegnathos saltator]

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 2/64 (3%)

Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAM--GGSQSDGSAITRRMWN 70
           VK +A+  YNFTFGN SVSTFVTAFYDAV+LY++AL E++    G    DG  +TRRMW 
Sbjct: 219 VKSLAQSNYNFTFGNSSVSTFVTAFYDAVLLYALALKESLPKKPGEVYLDGGNLTRRMWG 278

Query: 71  RTYQ 74
           ++++
Sbjct: 279 KSFK 282

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029271|gb|EGI69254.1| Atrial natriuretic peptide receptor A [Acromyrmex echinatior]

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 47/64 (73%), Gaps = 2/64 (3%)

Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAM--GGSQSDGSAITRRMWN 70
           VK +A+  YNF FGN SVSTFVTAFYDAV+LY++AL E++    G    DG  +TRRMW 
Sbjct: 441 VKSLAQRKYNFIFGNSSVSTFVTAFYDAVLLYALALKESLPEKPGEVNLDGGNLTRRMWG 500

Query: 71  RTYQ 74
           ++++
Sbjct: 501 KSFK 504

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
FB|FBgn0034568	1161	CG3216 [Drosophila melanogaste	0.418	0.053	0.539	3.3e-11
UNIPROTKB|F1SFW3	831	NPR1 "Guanylate cyclase" [Sus	0.418	0.074	0.467	7.2e-11
UNIPROTKB|E1BN71	1064	NPR1 "Guanylate cyclase" [Bos	0.418	0.058	0.451	7.1e-10
FB|FBgn0051183	1417	CG31183 [Drosophila melanogast	0.459	0.047	0.453	1.3e-09
WB|WBGene00020131	1276	gcy-28 [Caenorhabditis elegans	0.425	0.049	0.5	1.4e-09
UNIPROTKB|P16066	1061	NPR1 "Atrial natriuretic pepti	0.418	0.058	0.451	2.4e-09
UNIPROTKB|F1PMP1	1060	NPR1 "Guanylate cyclase" [Cani	0.418	0.058	0.451	1.7e-08
MGI|MGI:97371	1057	Npr1 "natriuretic peptide rece	0.418	0.058	0.403	7.5e-08
RGD|3195	1057	Npr1 "natriuretic peptide rece	0.418	0.058	0.403	9.6e-08
UNIPROTKB|D6RDL8	252	NPR3 "Atrial natriuretic pepti	0.378	0.222	0.406	1.3e-07

FB|FBgn0034568 CG3216 [Drosophila melanogaster (taxid:7227)]

 Score = 168 (64.2 bits), Expect = 3.3e-11, P = 3.3e-11
 Identities = 34/63 (53%), Positives = 43/63 (68%)

Query:    13 VKKVAKEGYNFTFGN-ESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNR 71
             V++ A   YN+TFG  E V+ F+ AFYD V L  +ALNET+  GG   DG  ITRRMWNR
Sbjct:   393 VRENALYDYNYTFGEGEEVNFFIGAFYDGVYLLGMALNETLTEGGDIRDGVNITRRMWNR 452

Query:    72 TYQ 74
             T++
Sbjct:   453 TFE 455

GO:0004383 "guanylate cyclase activity" evidence=ISS;NAS

GO:0004872 "receptor activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0006182 "cGMP biosynthetic process" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IKR

GO:0006468 "protein phosphorylation" evidence=IKR

UNIPROTKB|F1SFW3 NPR1 "Guanylate cyclase" [Sus scrofa (taxid:9823)]

 Score = 163 (62.4 bits), Expect = 7.2e-11, P = 7.2e-11
 Identities = 29/62 (46%), Positives = 47/62 (75%)

Query:    13 VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
             +K +A+E +NFT  +  V+T   AF+D ++LY+ A+ ET+A GG+ +DG +IT+RMWNR+
Sbjct:   100 LKHLAREQFNFTMEDGLVNTIPAAFHDGLLLYAQAVTETLAHGGTVTDGESITQRMWNRS 159

Query:    73 YQ 74
             +Q
Sbjct:   160 FQ 161

GO:0004383 "guanylate cyclase activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|E1BN71 NPR1 "Guanylate cyclase" [Bos taurus (taxid:9913)]

 Score = 155 (59.6 bits), Expect = 7.1e-10, P = 7.1e-10
 Identities = 28/62 (45%), Positives = 45/62 (72%)

Query:    13 VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
             +K++A E +NFT  +  V+T   +F+D ++LY  A+ ET+A GG+ +DG  IT+RMWNR+
Sbjct:   332 LKRLALEQFNFTMEDGLVNTIPASFHDGLLLYIQAVTETLAHGGAVTDGEGITQRMWNRS 391

Query:    73 YQ 74
             +Q
Sbjct:   392 FQ 393

GO:0042562 "hormone binding" evidence=IEA

GO:0016941 "natriuretic peptide receptor activity" evidence=IEA

GO:0007168 "receptor guanylyl cyclase signaling pathway" evidence=IEA

GO:0004383 "guanylate cyclase activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

FB|FBgn0051183 CG31183 [Drosophila melanogaster (taxid:7227)]

 Score = 154 (59.3 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 34/75 (45%), Positives = 49/75 (65%)

Query:     6 NGYVRLM--VKKVAKEGYNFTFG-NESVSTFVTAFYDAVILYSIALNETI----AMGGSQ 58
             N Y R+   +K +A E YN+TF  NE +S FVT+F+D V+LY+ ALNE+I     M    
Sbjct:   372 NEYTRVSNEIKAIAAEKYNYTFSDNEPISAFVTSFFDGVLLYANALNESIREDPTMLTRP 431

Query:    59 SDGSAITRRMWNRTY 73
              +G+ + RRMWNR++
Sbjct:   432 INGTDMVRRMWNRSF 446

GO:0004383 "guanylate cyclase activity" evidence=ISS;NAS

GO:0016941 "natriuretic peptide receptor activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IKR

GO:0006468 "protein phosphorylation" evidence=IKR

WB|WBGene00020131 gcy-28 [Caenorhabditis elegans (taxid:6239)]

 Score = 153 (58.9 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 33/66 (50%), Positives = 45/66 (68%)

Query:    11 LMVKKVAKEGYNFT--FGNE-SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRR 67
             L VK+ A + YN+T   G +  ++ F++AFYDAV+LY+IALNETI  G    +G  IT R
Sbjct:   373 LRVKERADQKYNYTNITGKDYEMNNFISAFYDAVLLYAIALNETIQSGLDPRNGHNITSR 432

Query:    68 MWNRTY 73
             MW RT+
Sbjct:   433 MWGRTF 438

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0016849 "phosphorus-oxygen lyase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0006182 "cGMP biosynthetic process" evidence=IDA

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0043005 "neuron projection" evidence=IDA

GO:0042048 "olfactory behavior" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0044297 "cell body" evidence=IDA

GO:0007606 "sensory perception of chemical stimulus" evidence=IMP

UNIPROTKB|P16066 NPR1 "Atrial natriuretic peptide receptor 1" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 28/62 (45%), Positives = 44/62 (70%)

Query:    13 VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
             +K +A E +NFT  +  V+T   +F+D ++LY  A+ ET+A GG+ +DG  IT+RMWNR+
Sbjct:   329 LKHLAYEQFNFTMEDGLVNTIPASFHDGLLLYIQAVTETLAHGGTVTDGENITQRMWNRS 388

Query:    73 YQ 74
             +Q
Sbjct:   389 FQ 390

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0050880 "regulation of blood vessel size" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0017046 "peptide hormone binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030828 "positive regulation of cGMP biosynthetic process" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0042417 "dopamine metabolic process" evidence=IEA

GO:0048662 "negative regulation of smooth muscle cell proliferation" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=NAS

GO:0030308 "negative regulation of cell growth" evidence=NAS

GO:0042312 "regulation of vasodilation" evidence=NAS

GO:0016525 "negative regulation of angiogenesis" evidence=TAS

GO:0035810 "positive regulation of urine volume" evidence=TAS

GO:0043114 "regulation of vascular permeability" evidence=TAS

GO:0007589 "body fluid secretion" evidence=TAS

GO:0035815 "positive regulation of renal sodium excretion" evidence=TAS

GO:0042562 "hormone binding" evidence=IPI

GO:0007166 "cell surface receptor signaling pathway" evidence=NAS

GO:0008528 "G-protein coupled peptide receptor activity" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0016941 "natriuretic peptide receptor activity" evidence=IDA

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0006182 "cGMP biosynthetic process" evidence=IDA

GO:0007168 "receptor guanylyl cyclase signaling pathway" evidence=IDA

UNIPROTKB|F1PMP1 NPR1 "Guanylate cyclase" [Canis lupus familiaris (taxid:9615)]

 Score = 142 (55.0 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 28/62 (45%), Positives = 44/62 (70%)

Query:    13 VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
             +K +A E +NFT  +  V+T   +F+D ++LY  A+ ET+A GG+ +DG AIT+RM NR+
Sbjct:   328 LKHLAHEQFNFTVEDGLVNTIPASFHDGLLLYVQAVTETLAHGGAVTDGEAITQRMRNRS 387

Query:    73 YQ 74
             +Q
Sbjct:   388 FQ 389

GO:0004383 "guanylate cyclase activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

MGI|MGI:97371 Npr1 "natriuretic peptide receptor 1" [Mus musculus (taxid:10090)]

 Score = 136 (52.9 bits), Expect = 7.5e-08, P = 7.5e-08
 Identities = 25/62 (40%), Positives = 42/62 (67%)

Query:    13 VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
             +K +A + +NFT  +   +    +F+D ++LY  A+ ET+A GG+ +DG  IT+RMWNR+
Sbjct:   325 LKLLADKKFNFTMEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRS 384

Query:    73 YQ 74
             +Q
Sbjct:   385 FQ 386

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004383 "guanylate cyclase activity" evidence=ISO;IMP;IDA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006182 "cGMP biosynthetic process" evidence=ISO;IMP;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0007166 "cell surface receptor signaling pathway" evidence=ISO

GO:0007168 "receptor guanylyl cyclase signaling pathway" evidence=ISO

GO:0008217 "regulation of blood pressure" evidence=IMP

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016849 "phosphorus-oxygen lyase activity" evidence=IEA

GO:0016941 "natriuretic peptide receptor activity" evidence=ISO

GO:0017046 "peptide hormone binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030828 "positive regulation of cGMP biosynthetic process" evidence=ISO

GO:0035556 "intracellular signal transduction" evidence=ISO

GO:0042417 "dopamine metabolic process" evidence=ISO

GO:0042562 "hormone binding" evidence=ISO

GO:0048662 "negative regulation of smooth muscle cell proliferation" evidence=ISO

GO:0050880 "regulation of blood vessel size" evidence=IEA

RGD|3195 Npr1 "natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)" [Rattus norvegicus (taxid:10116)]

 Score = 135 (52.6 bits), Expect = 9.6e-08, P = 9.6e-08
 Identities = 25/62 (40%), Positives = 42/62 (67%)

Query:    13 VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
             +K +A + +NFT  +   +    +F+D ++LY  A+ ET+A GG+ +DG  IT+RMWNR+
Sbjct:   325 LKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRS 384

Query:    73 YQ 74
             +Q
Sbjct:   385 FQ 386

GO:0004383 "guanylate cyclase activity" evidence=ISO;IDA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006182 "cGMP biosynthetic process" evidence=ISO;IDA

GO:0007166 "cell surface receptor signaling pathway" evidence=IMP

GO:0007168 "receptor guanylyl cyclase signaling pathway" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016941 "natriuretic peptide receptor activity" evidence=ISO;IDA

GO:0017046 "peptide hormone binding" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IMP

GO:0030828 "positive regulation of cGMP biosynthetic process" evidence=IMP

GO:0035556 "intracellular signal transduction" evidence=IDA

GO:0042417 "dopamine metabolic process" evidence=IMP

GO:0042562 "hormone binding" evidence=ISO

GO:0048662 "negative regulation of smooth muscle cell proliferation" evidence=IMP

GO:0050880 "regulation of blood vessel size" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=ISO

UNIPROTKB|D6RDL8 NPR3 "Atrial natriuretic peptide receptor 3" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 24/59 (40%), Positives = 38/59 (64%)

Query:    16 VAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQ 74
             V K+G N     + V+ FV  F+DA++LY +AL+E +  G S+ DG  I ++ WNRT++
Sbjct:   120 VEKQGLNM---EDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFE 175

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	148
cd06373	396	cd06373, PBP1_NPR_like, Ligand binding domain of n	8e-29
cd06352	389	cd06352, PBP1_NPR_GC_like, Ligand-binding domain o	2e-18
cd06385	405	cd06385, PBP1_NPR_A, Ligand-binding domain of type	1e-16
cd06386	387	cd06386, PBP1_NPR_C_like, Ligand-binding domain of	2e-12
cd06384	399	cd06384, PBP1_NPR_B, Ligand-binding domain of type	2e-11
cd06370	404	cd06370, PBP1_Speract_GC_like, Ligand-binding doma	1e-09
pfam01094	343	pfam01094, ANF_receptor, Receptor family ligand bi	4e-06

>gnl|CDD|107368 cd06373, PBP1_NPR_like, Ligand binding domain of natriuretic peptide receptor (NPR) family

 Score =  108 bits (271), Expect = 8e-29
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
           VK+ AK+ +N T  +  V+ F  AFYDAV+LY++ALNET+A GG   DG+ ITRRMWNRT
Sbjct: 288 VKERAKKKFNTTSDDSLVNFFAGAFYDAVLLYALALNETLAEGGDPRDGTNITRRMWNRT 347

Query: 73  YQ 74
           ++
Sbjct: 348 FE 349

Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase. Length = 396

>gnl|CDD|107347 cd06352, PBP1_NPR_GC_like, Ligand-binding domain of membrane guanylyl-cyclase receptors

 Score = 80.0 bits (198), Expect = 2e-18
 Identities = 32/63 (50%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 13  VKKVAKEGYNFTFGN-ESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNR 71
           VK+ AK     T    E VS +    YDAV+LY+ ALNET+A GG  + G  ITRRMWNR
Sbjct: 281 VKEAAKRPPFNTDAEPEQVSPYAGYLYDAVLLYAHALNETLAEGGDYNGGLIITRRMWNR 340

Query: 72  TYQ 74
           T+ 
Sbjct: 341 TFS 343

Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family. Length = 389

>gnl|CDD|107380 cd06385, PBP1_NPR_A, Ligand-binding domain of type A natriuretic peptide receptor

 Score = 74.8 bits (184), Expect = 1e-16
 Identities = 31/61 (50%), Positives = 43/61 (70%)

Query: 14  KKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTY 73
           K  AKE +NFT  +  ++     FYD V+LY+ ALNET+A GG++  G+AIT+RMWNRT+
Sbjct: 291 KTDAKEMFNFTVEDSLMNIIAGGFYDGVMLYAHALNETMAKGGTRPPGTAITQRMWNRTF 350

Query: 74  Q 74
            
Sbjct: 351 Y 351

Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANP>BNP>>CNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure. Length = 405

>gnl|CDD|107381 cd06386, PBP1_NPR_C_like, Ligand-binding domain of type C natriuretic peptide receptor

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 23/46 (50%), Positives = 36/46 (78%)

Query: 29  SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQ 74
            V+ FV  F+DA++LY++AL+E +  G S+ DG+ IT+RMWNRT++
Sbjct: 294 YVNMFVEGFHDAILLYALALHEVLKNGYSKKDGTKITQRMWNRTFE 339

Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANP>CNP>BNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation. Length = 387

>gnl|CDD|107379 cd06384, PBP1_NPR_B, Ligand-binding domain of type B natriuretic peptide receptor

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 26/57 (45%), Positives = 36/57 (63%)

Query: 17  AKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTY 73
           AKE +        ++     FYD V+LY++ALNET+A GGSQ DG  ITR+M +R +
Sbjct: 295 AKEDFGVELEPSLMNFIAGCFYDGVMLYAMALNETLAEGGSQKDGLNITRKMQDRRF 351

Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNP>>ANP>BNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux. Length = 399

>gnl|CDD|107365 cd06370, PBP1_Speract_GC_like, Ligand-binding domain of membrane bound guanylyl cyclases

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 6   NGYVRLMVKKVAKEGYNFTFGNESVSTFVTAF----YDAVILYSIALNETIAMGGSQSDG 61
           + +   + K   +  +N   G   +   +       YDAV+LY+ AL+ET+  GG   +G
Sbjct: 285 DSFSIFVRKYNLEPPFNGDLGESELVLEIDIEAAYLYDAVMLYAKALDETLLEGGDIYNG 344

Query: 62  SAITRRMWNRTYQ 74
           +AI   + NRTY+
Sbjct: 345 TAIVSHILNRTYR 357

Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model. Length = 404

>gnl|CDD|216296 pfam01094, ANF_receptor, Receptor family ligand binding region

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 22  NFTFGNESVSTFVTAFYDAVILYSIALNETIAMG-----GSQSDGSAITRRMWNRTYQ 74
                +   + +    YDAV L + ALNE +        G   DGS +   + N  ++
Sbjct: 260 CTPALDTEPNGYALLAYDAVYLLAHALNEALRDDPNITRGLWVDGSQLLEYLRNVNFE 317

This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Length = 343

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
cd06369	380	PBP1_GC_C_enterotoxin_receptor Ligand-binding doma	99.68
cd06386	387	PBP1_NPR_C_like Ligand-binding domain of type C na	99.56
cd06385	405	PBP1_NPR_A Ligand-binding domain of type A natriur	99.35
cd06372	391	PBP1_GC_G_like Ligand-binding domain of membrane g	99.33
cd06384	399	PBP1_NPR_B Ligand-binding domain of type B natriur	99.31
cd06370	404	PBP1_Speract_GC_like Ligand-binding domain of memb	99.24
cd06371	382	PBP1_sensory_GC_DEF_like Ligand-binding domain of	98.96
cd06373	396	PBP1_NPR_like Ligand binding domain of natriuretic	98.92
cd06352	389	PBP1_NPR_GC_like Ligand-binding domain of membrane	98.73
cd06362	452	PBP1_mGluR Ligand binding domain of the metabotrop	98.29
PF01094	348	ANF_receptor: Receptor family ligand binding regio	98.1
cd06367	362	PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali	97.86
cd06365	469	PBP1_Pheromone_receptor Ligand-binding domain of t	97.82
cd06379	377	PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/	97.65
cd06380	382	PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali	97.53
cd06390	364	PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucin	97.22
cd06363	410	PBP1_Taste_receptor Ligand-binding domain of the T	96.87
cd06376	463	PBP1_mGluR_groupIII Ligand-binding domain of the g	96.81
cd06387	372	PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucin	96.76
cd06392	400	PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v	96.75
cd06374	472	PBP1_mGluR_groupI Ligand binding domain of the gro	96.7
cd06389	370	PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucin	96.45
cd06393	384	PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol	96.38
cd06391	400	PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v	96.28
cd06388	371	PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin	95.86
KOG1055|consensus	865		95.67
cd06375	458	PBP1_mGluR_groupII Ligand binding domain of the gr	95.24
cd06378	362	PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/	94.94
cd06364	510	PBP1_CaSR Ligand-binding domain of the CaSR calciu	94.5
cd06360	336	PBP1_alkylbenzenes_like Type I periplasmic binding	93.02
cd06377	382	PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/	92.33
cd06332	333	PBP1_aromatic_compounds_like Type I periplasmic bi	92.13
cd06366	350	PBP1_GABAb_receptor Ligand-binding domain of GABAb	91.64
cd06345	344	PBP1_ABC_ligand_binding_like_10 Type I periplasmic	90.9
cd06342	334	PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind	90.5
cd06361	403	PBP1_GPC6A_like Ligand-binding domain of the promi	88.59
cd06359	333	PBP1_Nba_like Type I periplasmic binding component	87.73
TIGR03669	374	urea_ABC_arch urea ABC transporter, substrate-bind	86.96
cd06348	344	PBP1_ABC_ligand_binding_like_13 Type I periplasmic	84.69
cd06347	334	PBP1_ABC_ligand_binding_like_12 Type I periplasmic	82.96
cd06330	346	PBP1_Arsenic_SBP_like Periplasmic solute-binding d	81.95

>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C

Probab=99.68  E-value=7.4e-17  Score=141.46  Aligned_cols=63  Identities=13%  Similarity=0.265  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---------------cc---ccCCCCCcEEEEEee
Q psy8885          32 TFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---------------KS---ILPTTTPLRLVHKYI   93 (148)
Q Consensus        32 ~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---------------ys---LD~~~g~f~vV~~Y~   93 (148)
                      .||++|||||+|||+||||+|++|+++.| ++|+++||||||+|+               |+   |++++++|+||++|+
T Consensus       285 ~~aa~fyDaVLLYa~AL~EtL~~G~~~~~-~~I~~~m~NrTF~GitG~V~IDeNGDRd~dfsLl~ms~~tg~y~vV~~y~  363 (380)
T cd06369         285 DYVAAYHDGVLLFGHVLKKFLESQEGVQT-FSFINEFRNISFEGAGGPYTLDEYGDRDVNFTLLYTSTDTSKYKVLFEFD  363 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCc-HHHHHHHhCcceecCCCceEeCCCCCccCceEEEEeeCCCCCeEEEEEEE
Confidence            99999999999999999999999999655 999999999999999               66   378889999999999


Q ss_pred             ec
Q psy8885          94 LY   95 (148)
Q Consensus        94 g~   95 (148)
                      +.
T Consensus       364 t~  365 (380)
T cd06369         364 TS  365 (380)
T ss_pred             CC
Confidence            84

Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.

>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor

Probab=99.56  E-value=1.3e-14  Score=123.57  Aligned_cols=90  Identities=31%  Similarity=0.467  Sum_probs=75.4

Q ss_pred             cchhHHHHHHHHhcCCCCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc--------
Q psy8885           5 GNGYVRLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP--------   76 (148)
Q Consensus         5 ~~~~F~~eVk~~a~~pFn~t~~~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv--------   76 (148)
                      .+..|.++++++.+.+.+| .++..++.|++++||||+|||+||++++++|++.+||+.|.++|+|++|+|+        
T Consensus       271 ~~~~f~~~~~~~~~~~~~~-~~~~~~~~~aa~~yDav~l~A~Al~~~~~~g~~~~~g~~l~~~l~~~~f~G~tG~v~~d~  349 (387)
T cd06386         271 EFEKFSMEVKSSVEKAGDL-NDCDYVNMFVEGFHDAILLYALALHEVLKNGYSKKDGTKITQRMWNRTFEGIAGQVSIDA  349 (387)
T ss_pred             HHHHHHHHHHHHHHhCCCC-cccccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhCCceeeccccEEECC
Confidence            3567899995444444455 3466799999999999999999999999999888999999999999999999        


Q ss_pred             -------cc---c-cCCCCCcEEEEEeeec
Q psy8885          77 -------KS---I-LPTTTPLRLVHKYILY   95 (148)
Q Consensus        77 -------ys---L-D~~~g~f~vV~~Y~g~   95 (148)
                             |.   | |+.+++|++|++|+++
T Consensus       350 ~g~r~~~~~v~~~~~~~~~~~~~~~~~~~~  379 (387)
T cd06386         350 NGDRYGDFSVIAMTDVEAGTYEVVGNYFGK  379 (387)
T ss_pred             CCCccccEEEEEccCCCCccEEEEeEEccc
Confidence                   33   4 6788999999999974

Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.

>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor

Probab=99.35  E-value=3.7e-12  Score=108.22  Aligned_cols=91  Identities=36%  Similarity=0.526  Sum_probs=75.8

Q ss_pred             cchhHHHHHHHHhcCCCCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc--------
Q psy8885           5 GNGYVRLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP--------   76 (148)
Q Consensus         5 ~~~~F~~eVk~~a~~pFn~t~~~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv--------   76 (148)
                      .+..|.+++++..++||+++..+..++.|++++||||++||.||+++++++++.+||.+|.+.|++++|+|+        
T Consensus       282 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~l~a~Al~~~~~~~~~~~~g~~i~~~l~~~~f~G~tG~v~fd~  361 (405)
T cd06385         282 EYKEFLSDLKTDAKEMFNFTVEDSLMNIIAGGFYDGVMLYAHALNETMAKGGTRPPGTAITQRMWNRTFYGVTGFVKIDD  361 (405)
T ss_pred             hHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhhCceEeeceeEEEEcC
Confidence            356788888555678999876545689999999999999999999999999887899999999999999998        


Q ss_pred             -------cc---c-cCCCCCcEEEEEeeec
Q psy8885          77 -------KS---I-LPTTTPLRLVHKYILY   95 (148)
Q Consensus        77 -------ys---L-D~~~g~f~vV~~Y~g~   95 (148)
                             |.   | ..++|++++|++|++.
T Consensus       362 ~G~r~~~~~~~~~~~~~~g~~~~v~~~~~~  391 (405)
T cd06385         362 NGDRETDFALWDMTDTESGDFQVVSVYNGT  391 (405)
T ss_pred             CCCEeceeEEEEccCCCCCcEEEEEEEccc
Confidence                   32   2 2356789999999963

Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.

>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G

Probab=99.33  E-value=7e-12  Score=105.90  Aligned_cols=90  Identities=20%  Similarity=0.274  Sum_probs=72.9

Q ss_pred             chhHHHHH-HHHhcCCCCcccC-CcchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhh---cCccccc----
Q psy8885           6 NGYVRLMV-KKVAKEGYNFTFG-NESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMW---NRTYQDP----   76 (148)
Q Consensus         6 ~~~F~~eV-k~~a~~pFn~t~~-~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~---nrtF~Gv----   76 (148)
                      +..|.+.+ ++..++||+++.. ...++.|++++||||++||+||+++++.|.+..||+++++.|+   +++|+|+    
T Consensus       272 ~~~f~~~~~~~~~~~p~~~~~~~~~~~~~~a~~~yDav~~~A~Al~~~~~~g~~~~~g~~l~~~l~~~~~~~f~G~tG~v  351 (391)
T cd06372         272 GYEFRKQVYQKLKRPPFQSSLSSEEQVSPYSAYLHDAVLLYALAVKEMLKAGKDFRNGRQLVSTLRGANQVELQGITGLV  351 (391)
T ss_pred             hhHHHHHHHHHHhcCCccccccccccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhccCceEeccceeE
Confidence            55788888 6667789998643 2368999999999999999999999998888889999999999   5799998    


Q ss_pred             -----------cc---c-cCCC-CCcEEEEEeeec
Q psy8885          77 -----------KS---I-LPTT-TPLRLVHKYILY   95 (148)
Q Consensus        77 -----------ys---L-D~~~-g~f~vV~~Y~g~   95 (148)
                                 |+   + +..+ +.+++|++|.+.
T Consensus       352 ~fd~~G~r~~~y~i~~~~~~~~~~~~~~vg~~~~~  386 (391)
T cd06372         352 LLDEQGKRQMDYSVYALQKSGNSSLFLPFLHYDSH  386 (391)
T ss_pred             EECCCCCcceeEEEEeccccCCccceeeEEEecch
Confidence                       33   3 2223 458899999873

This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.

>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor

Probab=99.31  E-value=8.2e-12  Score=106.34  Aligned_cols=89  Identities=33%  Similarity=0.444  Sum_probs=73.6

Q ss_pred             chhHHHHHHHHhcCCCCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---------
Q psy8885           6 NGYVRLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---------   76 (148)
Q Consensus         6 ~~~F~~eVk~~a~~pFn~t~~~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---------   76 (148)
                      ...|.+++++...++|++......++.+++++||||+|||.||+++++++++..||.+|.+.|++++|+|+         
T Consensus       284 ~~~F~~~~~~~~~~~~~~~~~p~~~~~~aa~~YDav~l~a~Al~~~~~~~~~~~~g~~i~~~l~~~~f~GvtG~v~fd~~  363 (399)
T cd06384         284 YKEFQRELHARAKEDFGVELEPSLMNFIAGCFYDGVMLYAMALNETLAEGGSQKDGLNITRKMQDRRFWGVTGLVSIDKN  363 (399)
T ss_pred             HHHHHHHHHHHHhhhcCCCcCcchHhhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcHhHHHHHhCceeecceeEEEECCC
Confidence            45688888554555688754445689999999999999999999999998877899999999999999998         


Q ss_pred             ------cc---c-cCCCCCcEEEEEeee
Q psy8885          77 ------KS---I-LPTTTPLRLVHKYIL   94 (148)
Q Consensus        77 ------ys---L-D~~~g~f~vV~~Y~g   94 (148)
                            |.   | +.+.|++++|++|++
T Consensus       364 G~r~~~~~~~~~~~~~~g~~~~v~~~~~  391 (399)
T cd06384         364 NDRDIDFDLWAMTDHETGKYEVVAHYNG  391 (399)
T ss_pred             CCcccceEEEEeecCCCCeEEEEEEEcC
Confidence                  22   3 557789999999987

Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.

>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases

Probab=99.24  E-value=1.3e-11  Score=105.40  Aligned_cols=72  Identities=31%  Similarity=0.420  Sum_probs=61.6

Q ss_pred             cchhHHHHH-HHHhcCCCCccc----CCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc
Q psy8885           5 GNGYVRLMV-KKVAKEGYNFTF----GNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus         5 ~~~~F~~eV-k~~a~~pFn~t~----~~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      .+..|.+.+ ++...+||+++.    ....++.|+++.||||++||+||+++++.+.+..||++|.+.|++++|+|+
T Consensus       283 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~yDAv~~~a~Al~~~~~~~~~~~~g~~i~~~l~~~~f~Gv  359 (404)
T cd06370         283 DYDSFSIFVRKYNLEPPFNGDLGESELVLEIDIEAAYLYDAVMLYAKALDETLLEGGDIYNGTAIVSHILNRTYRSI  359 (404)
T ss_pred             hHHHHHHHHHHhccCCCCcccccccccccccceeeehhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcccccc
Confidence            456788888 445678888754    234688999999999999999999999998878899999999999999998

Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.

>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues

Probab=98.96  E-value=1.9e-09  Score=92.05  Aligned_cols=57  Identities=21%  Similarity=0.367  Sum_probs=49.8

Q ss_pred             hcCCCCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc
Q psy8885          17 AKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        17 a~~pFn~t~~~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      +..||+.+  ...++.|++++||||++||+||++++++|++ .||++|.+.|++++|+|+
T Consensus       281 ~~~~~~~~--~~~~~~~~~~~YDav~~~a~Al~~a~~~g~~-~d~~~l~~~l~~~~f~Gv  337 (382)
T cd06371         281 GEIPSDLE--PEQVSPLFGTIYNSIYLLAHAVENARAAGGG-VSGANLAQHTRNLEFQGF  337 (382)
T ss_pred             CCCCCCCC--ccccchhHHHHHHHHHHHHHHHHHHHHhCCC-ccHHHHHHHHhCcccccc
Confidence            45777743  3468889999999999999999999998876 799999999999999998

This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge

>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family

Probab=98.92  E-value=4.6e-09  Score=88.90  Aligned_cols=89  Identities=45%  Similarity=0.654  Sum_probs=70.5

Q ss_pred             chhHHHHHHHHhcCCCCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---------
Q psy8885           6 NGYVRLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---------   76 (148)
Q Consensus         6 ~~~F~~eVk~~a~~pFn~t~~~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---------   76 (148)
                      +..|.+..++...++|++..++..++.|+++.||||+++|+||+++++++++..||.+|.+.|.+.+|+|+         
T Consensus       281 ~~~F~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~~~~~~~~~~~~~i~~~l~~~~f~G~tG~v~fd~~  360 (396)
T cd06373         281 YKEFSLEVKERAKKKFNTTSDDSLVNFFAGAFYDAVLLYALALNETLAEGGDPRDGTNITRRMWNRTFEGITGNVSIDEN  360 (396)
T ss_pred             HHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHhcCCceecccCceEeecC
Confidence            45677777555556787655555788999999999999999999999888877899999999999999998         


Q ss_pred             ------ccc---c-CCCCCcEEEEEeee
Q psy8885          77 ------KSI---L-PTTTPLRLVHKYIL   94 (148)
Q Consensus        77 ------ysL---D-~~~g~f~vV~~Y~g   94 (148)
                            |.+   . ...|.+++|+.|++
T Consensus       361 G~~~~~~~v~~~~~~~~g~~~~~~~~~~  388 (396)
T cd06373         361 GDRESDFSLWDMTDTETGTFEVVANYNG  388 (396)
T ss_pred             CcccceeeeeeccCCCCceEEEEeeccc
Confidence                  221   1 13567888888876

Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli

>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors

Probab=98.73  E-value=5.6e-08  Score=81.48  Aligned_cols=72  Identities=40%  Similarity=0.585  Sum_probs=61.8

Q ss_pred             cchhHHHHH-HHHhcCCCCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc
Q psy8885           5 GNGYVRLMV-KKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus         5 ~~~~F~~eV-k~~a~~pFn~t~~~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      .+..|.++. ++...+||+|......++.|+++.||||++||+||+++...+++..++..+.+.|++.+|.|+
T Consensus       273 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~~~~~~~~~~~~~v~~~l~~~~f~g~  345 (389)
T cd06352         273 EYEEFSEEVKEAAKRPPFNTDAEPEQVSPYAGYLYDAVLLYAHALNETLAEGGDYNGGLIITRRMWNRTFSGI  345 (389)
T ss_pred             hHHHHHHHHHHHHhcccCccCCCccccchhhhhHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHhcCcEEEee
Confidence            466788888 666678999874445678999999999999999999999988777799999999999999998

Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l

>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR)

Probab=98.29  E-value=1.4e-06  Score=75.26  Aligned_cols=47  Identities=19%  Similarity=0.086  Sum_probs=41.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcC----------CCCCChHHHHHHhhcCccccc
Q psy8885          30 VSTFVTAFYDAVILYSIALNETIAMG----------GSQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        30 v~~yaa~LyDAV~LYA~ALnetL~~g----------~~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      .+.++++.||||+++|+||++++..+          ....+|..|++.|++.+|.|+
T Consensus       351 ~~~~~~~vyDAV~a~A~AL~~~l~~~~~~~~~~c~~~~~~~~~~l~~~l~~v~f~g~  407 (452)
T cd06362         351 QESKVQFVIDAVYAMAHALHNMHRDLCPGTTGLCDAMKPIDGRKLLFYLRNVSFSGL  407 (452)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCccCCCHHHHHHHHHhCCcCCC
Confidence            46699999999999999999999764          134799999999999999997

Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.

>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure []

Probab=98.10  E-value=4.1e-06  Score=67.54  Aligned_cols=59  Identities=25%  Similarity=0.394  Sum_probs=48.4

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCC-------CChHHHHHHhhcCccccc---ccccCCCC
Q psy8885          26 GNESVSTFVTAFYDAVILYSIALNETIAMGGSQ-------SDGSAITRRMWNRTYQDP---KSILPTTT   84 (148)
Q Consensus        26 ~~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~-------~nGt~I~~~m~nrtF~Gv---ysLD~~~g   84 (148)
                      ....++.+++++||||++||+||+++++.+++.       .+|..|.+.|++.+|.|+   ...|.++|
T Consensus       267 ~~~~~~~~~~~~yDAv~~~a~al~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~v~f~~~~G  335 (348)
T PF01094_consen  267 SDQEPSPYAAYAYDAVYLLAHALNRALQDGGPVTNGRNPWQNGSQLLKYLRNVSFEGLTGRVSFDSNDG  335 (348)
T ss_dssp             TTSSGCHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSSGTSTTHHHHHHHHHTEEEEETTEEEEEETTTS
T ss_pred             cccccceeeeeehhhhHHHHHHHHHHHHhccCCCCCccccccHHHHHHHHhheeeeCCCCCEEEeCCCC
Confidence            356899999999999999999999999886543       268899999999999997   33455333

; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....

>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors

Probab=97.86  E-value=3.8e-05  Score=64.21  Aligned_cols=46  Identities=22%  Similarity=0.295  Sum_probs=40.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcCCC---------------CCChHHHHHHhhcCccccc
Q psy8885          31 STFVTAFYDAVILYSIALNETIAMGGS---------------QSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        31 ~~yaa~LyDAV~LYA~ALnetL~~g~~---------------~~nGt~I~~~m~nrtF~Gv   76 (148)
                      ..++++.||||+++|+||++++..+..               ..+|..+.+.|++++|.|+
T Consensus       255 ~~~~~~~~Dav~~~a~Al~~~~~~~~~~~~~~~~C~~~~~~~~~~g~~l~~~l~~~~f~G~  315 (362)
T cd06367         255 YSLEARVRDAVAIVARAAESLLRDKGALPEPPVNCYDTANKRESSGQYLARFLMNVTFDGE  315 (362)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCCCCCCCCchHHHHHHHhcccccCC
Confidence            578999999999999999999875321               3789999999999999997

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits

>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily

Probab=97.82  E-value=4.1e-05  Score=67.62  Aligned_cols=47  Identities=19%  Similarity=0.113  Sum_probs=40.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcCC----------CCCChHHHHHHhhcCccccc
Q psy8885          30 VSTFVTAFYDAVILYSIALNETIAMGG----------SQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        30 v~~yaa~LyDAV~LYA~ALnetL~~g~----------~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      ++.++.+.|||||.+|+||+++|..+.          ...++.++.+.|+|.+|.|.
T Consensus       356 ~~~~~~~v~dAVya~AhALh~~l~c~~~~~~~~~~~~~~~~~~~l~~~l~~v~F~~~  412 (469)
T cd06365         356 MSEESYNVYNAVYAVAHALHEMLLQQVETQSENNGKRLIFLPWQLHSFLKNIQFKNP  412 (469)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCccHHHHHHHHHhccccCC
Confidence            466889999999999999999998643          12578899999999999987

Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.

>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor

Probab=97.65  E-value=0.00013  Score=61.51  Aligned_cols=46  Identities=17%  Similarity=0.221  Sum_probs=38.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCChHHHHHHhhcCccccc
Q psy8885          31 STFVTAFYDAVILYSIALNETIAMGG-------------SQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        31 ~~yaa~LyDAV~LYA~ALnetL~~g~-------------~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      ..++++.||||+++|+||+++++.+.             +..+|..+.+.|++.+|.|+
T Consensus       270 ~~~~~~~yDAV~~~A~Al~~~~~~~~~~~~~~~c~~~~~~~~~g~~l~~~l~~v~f~G~  328 (377)
T cd06379         270 KNESSHIRDAVAVLASAIQELFEKENITEPPRECVGNTVIWETGPLFKRALMSSKYPGE  328 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCcchHHHHHHHHhCCcCCc
Confidence            46899999999999999999986322             13479999999999999997

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore

>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor

Probab=97.53  E-value=0.0005  Score=57.94  Aligned_cols=48  Identities=17%  Similarity=0.186  Sum_probs=41.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCC-----------------------CCCChHHHHHHhhcCccccc
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGG-----------------------SQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~-----------------------~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      .++.++++.||||++.|.||+++...++                       ...+|..|.+.|.+.+|.|+
T Consensus       272 ~~~~~aa~aYDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~g~~i~~~l~~~~~~G~  342 (382)
T cd06380         272 PIKYTAALAHDAVLVMAEAFRSLRRQRGSGRHRIDISRRGNGGDCLANPAVPWEHGIDIERALKKVQFEGL  342 (382)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCcCCCCCCCCccchHHHHHHHHhcccCCc
Confidence            4778999999999999999999987552                       12579999999999899997

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita

>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor

Probab=97.22  E-value=0.0021  Score=55.46  Aligned_cols=49  Identities=14%  Similarity=0.109  Sum_probs=41.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHcCCC-----------------CCChHHHHHHhhcCccccc
Q psy8885          28 ESVSTFVTAFYDAVILYSIALNETIAMGGS-----------------QSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        28 ~~v~~yaa~LyDAV~LYA~ALnetL~~g~~-----------------~~nGt~I~~~m~nrtF~Gv   76 (148)
                      ..++.++++.||||++.|.|+.+...++.+                 ...|..+++.|++.+|.|+
T Consensus       259 ~~~~~~~~l~yDaV~~~A~A~~~l~~~~~~~~~~~~~~~C~~~~~~~w~~G~~l~~~i~~~~f~Gl  324 (364)
T cd06390         259 KRPKYTSALTYDGVRVMAEAFQNLRKQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGL  324 (364)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCCCCCccHHHHHHHHHhhccccc
Confidence            367899999999999999999997664432                 1469999999999999998

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor

Probab=96.87  E-value=0.0033  Score=53.98  Aligned_cols=44  Identities=16%  Similarity=0.180  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCC------CCChHHHHHHhhcCccccc
Q psy8885          33 FVTAFYDAVILYSIALNETIAMGGS------QSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        33 yaa~LyDAV~LYA~ALnetL~~g~~------~~nGt~I~~~m~nrtF~Gv   76 (148)
                      +++..||||+++|+||++++..|..      ..++..|.+.|++.+|.|+
T Consensus       308 ~~~~~YDaV~~~a~Al~~a~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~  357 (410)
T cd06363         308 FAFSVYAAVYAVAHALHNVLQCGSGGCPKRVPVYPWQLLEELKKVNFTLL  357 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHhccEEecC
Confidence            5678999999999999999887753      2468889999999889986

Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.

>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor

Probab=96.81  E-value=0.0033  Score=55.01  Aligned_cols=45  Identities=18%  Similarity=0.142  Sum_probs=38.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHcC--------C--CCCChHHHHHHhhcCccccc
Q psy8885          32 TFVTAFYDAVILYSIALNETIAMG--------G--SQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        32 ~yaa~LyDAV~LYA~ALnetL~~g--------~--~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      .++++.||||+.+|+||++++..+        .  ...+|..+.+.|++.+|.|.
T Consensus       358 ~~~~~v~dAVyaiA~ALh~l~~~~c~~~~~~C~~~~~~~~~~l~~~L~~v~F~g~  412 (463)
T cd06376         358 GKVQFVIDAVYAMAHALHSMHKDLCPGYTGVCPEMEPADGKKLLKYIRAVNFNGS  412 (463)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCccCCCCCHHHHHHHHHhCCccCC
Confidence            378999999999999999999543        1  23689999999999999986

Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.

>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor

Probab=96.76  E-value=0.0094  Score=51.91  Aligned_cols=49  Identities=16%  Similarity=0.054  Sum_probs=41.0

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHcCCC----------------C-CChHHHHHHhhcCccccc
Q psy8885          28 ESVSTFVTAFYDAVILYSIALNETIAMGGS----------------Q-SDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        28 ~~v~~yaa~LyDAV~LYA~ALnetL~~g~~----------------~-~nGt~I~~~m~nrtF~Gv   76 (148)
                      ..++.++++.||||++.|.|+.+...++.+                + ..|..|++.|...+|.|.
T Consensus       267 ~~l~~~~al~yDaV~~~A~A~~~l~~~~~~~~~~~~~~~C~~~~~~~W~~G~~l~~~ik~v~~~GL  332 (372)
T cd06387         267 SPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGM  332 (372)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCcCCCCCCCccchHHHHHHHHhcccCCC
Confidence            357899999999999999999987654321                2 579999999999999998

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family

Probab=96.75  E-value=0.0034  Score=55.50  Aligned_cols=48  Identities=10%  Similarity=0.162  Sum_probs=39.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHc--------------CCC-CCChHHHHHHhhcCccccc
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAM--------------GGS-QSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~--------------g~~-~~nGt~I~~~m~nrtF~Gv   76 (148)
                      .+++++++.||||++.|.||++.+..              ... ...|..|++.|+...|.|+
T Consensus       292 ~l~~~aalayDaV~~~A~Al~~ll~~~~~~~~~~l~C~~~~~~~w~~G~~ll~~ik~v~f~GL  354 (400)
T cd06392         292 MLQVSNLYLYDSVLMLANAFHRKLEDRKWHSMASLNCIRKSTKPWNGGRSMLETIKKGHITGL  354 (400)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCccCCCCCCCCCChHHHHHHHHhCCCccC
Confidence            58899999999999999999986531              111 2579999999999999998

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel

>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor

Probab=96.70  E-value=0.0021  Score=56.55  Aligned_cols=45  Identities=9%  Similarity=0.085  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCC----------CCCChHHHHHHhhcCccccc
Q psy8885          32 TFVTAFYDAVILYSIALNETIAMGG----------SQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        32 ~yaa~LyDAV~LYA~ALnetL~~g~----------~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      .++++.||||+..|+||++++..+-          +..+|..+.+.|++.+|.|+
T Consensus       370 ~~~~~vyDAVyaiA~ALh~~~~~~~~~~~~~c~~~~~~~~~~l~~~l~~v~F~g~  424 (472)
T cd06374         370 SKMGFVINAIYAMAHGLHNMHQDLCPGHVGLCDAMKPIDGRKLLEYLLKTSFSGV  424 (472)
T ss_pred             ceeHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCCCHHHHHHHHHhCcccCC
Confidence            6788999999999999999985431          23679999999999999997

Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.

>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor

Probab=96.45  E-value=0.0088  Score=51.26  Aligned_cols=49  Identities=16%  Similarity=0.129  Sum_probs=41.1

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHcCCC-----------------CCChHHHHHHhhcCccccc
Q psy8885          28 ESVSTFVTAFYDAVILYSIALNETIAMGGS-----------------QSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        28 ~~v~~yaa~LyDAV~LYA~ALnetL~~g~~-----------------~~nGt~I~~~m~nrtF~Gv   76 (148)
                      ..++.++|..||||++.|.|+.+....+.+                 ..+|..|.+.|...+|.|+
T Consensus       264 ~~~~~~aAl~yDAV~v~a~A~~~l~~~~~~~~~~~~~~~C~~~~~~~w~~G~~i~~~l~~~~~~Gl  329 (370)
T cd06389         264 KTIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGL  329 (370)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCcCCCCCCCCCCcHHHHHHHHhcccCcc
Confidence            357889999999999999999998655321                 1489999999999899998

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor

Probab=96.38  E-value=0.014  Score=49.65  Aligned_cols=48  Identities=17%  Similarity=0.151  Sum_probs=38.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCC---------CCChHHHHHHhhcCccccc
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGS---------QSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~---------~~nGt~I~~~m~nrtF~Gv   76 (148)
                      .++.+++..||||++.|.|+.+.-..+.+         ...|..|.+.|....|+|+
T Consensus       285 ~~~~~aal~yDav~~~a~A~~~~~~~~~~~~~c~~~~~w~~G~~i~~~l~~~~~~Gl  341 (384)
T cd06393         285 VMMTDAALLYDAVHMVSVCYQRAPQMTVNSLQCHRHKAWRFGGRFMNFIKEAQWEGL  341 (384)
T ss_pred             cccchhHHhhhhHHHHHHHHhhhhhcCCCCCCCCCCCCCcccHHHHHHHhheeeccc
Confidence            35789999999999999999965433211         2468899999998899998

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated

>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family

Probab=96.28  E-value=0.0079  Score=52.66  Aligned_cols=48  Identities=13%  Similarity=0.151  Sum_probs=39.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcC--------------C-CCCChHHHHHHhhcCccccc
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMG--------------G-SQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g--------------~-~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      .++.++++.||||++.|.|+++.+..+              . ....|..|++.|...+|+|+
T Consensus       292 ~~~~~~alayDaV~~~A~A~~~l~~~~~~~~~~~~~c~~~~~~~w~~G~~ll~~i~~~~f~Gl  354 (400)
T cd06391         292 MMEISNLYIYDTVLLLANAFHKKLEDRKWHSMASLSCIRKNSKPWQGGRSMLETIKKGGVSGL  354 (400)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHhhccccCCCCcccccCCCCCCCChHHHHHHHHhcCcccc
Confidence            467999999999999999999875321              1 12579999999999999998

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a

>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor

Probab=95.86  E-value=0.024  Score=48.85  Aligned_cols=48  Identities=15%  Similarity=0.090  Sum_probs=38.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCC-----------------CCCChHHHHHHhhcCccccc
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGG-----------------SQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~-----------------~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      .+..+++..||||++.|.|+.+....+.                 ....|..|.+.|...+|+|+
T Consensus       266 ~~~~~aAl~YDaV~l~a~A~~~l~~~~~~~~~~~~~~~C~~~~~~~w~~G~~i~~~lk~~~~~Gl  330 (371)
T cd06388         266 PPKYTSALTYDGVLVMAEAFRNLRRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGL  330 (371)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCcCCCCCCCCcccHHHHHHHHhcCcCCC
Confidence            4678999999999999999988642111                 12567899999988889998

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>KOG1055|consensus

Probab=95.67  E-value=0.029  Score=54.25  Aligned_cols=102  Identities=16%  Similarity=0.048  Sum_probs=71.2

Q ss_pred             hhHHHHH-HHHhcCCCCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHcCCC------------CCChHHHHHHhhcCcc
Q psy8885           7 GYVRLMV-KKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGS------------QSDGSAITRRMWNRTY   73 (148)
Q Consensus         7 ~~F~~eV-k~~a~~pFn~t~~~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~------------~~nGt~I~~~m~nrtF   73 (148)
                      ..|..++ +++...+     +...-+..+++-||||+.-|+|+|+|+..++.            ..=+.+|.+.|.+++|
T Consensus       319 ~~~l~~~~~~r~~~~-----~~~~~~~~~~~ayd~Iwa~ala~n~t~e~l~~~~~~l~~f~y~~k~i~d~i~eamn~tsF  393 (865)
T KOG1055|consen  319 QEFLEELTKYRKRHP-----EETGGFQEAPLAYDAIWALALALNKTMEGLGRSHVRLEDFNYNNKTIADQIYEAMNSTSF  393 (865)
T ss_pred             HHHHHHHHhhhcccc-----ccccCcccCchHHHHHHHHHHHHHHHHhcCCccceeccccchhhhHHHHHHHHHhhcccc
Confidence            3566666 4444332     23456778889999999999999999987521            1235678888989999


Q ss_pred             ccc-----cc----c---c---CCCCCcEEEEEeeec--------------CCCCCCCCCceecCCCch
Q psy8885          74 QDP-----KS----I---L---PTTTPLRLVHKYILY--------------YVIPLCNHKCTIANSILS  113 (148)
Q Consensus        74 ~Gv-----ys----L---D---~~~g~f~vV~~Y~g~--------------g~~PLd~P~CGF~G~~C~  113 (148)
                      +|+     |+    |   +   -+.|.++.++.|.+.              |.||+|.=+=+=+-..-+
T Consensus       394 ~GvsG~V~F~~geR~a~t~ieQ~qdg~y~k~g~Yds~~D~ls~~n~~~w~~g~ppkd~Tv~~~~~~~~S  462 (865)
T KOG1055|consen  394 EGVSGHVVFSNGERMALTLIEQFQDGKYKKIGYYDSTKDDLSWINTEKWIGGSPPKDSTLIIKTFRFVS  462 (865)
T ss_pred             cccccceEecchhhHHHHHHHHHhCCceEeecccccccchhhccccceEeccCCCcccceeehcccccC
Confidence            998     33    1   1   255889999999842              569999876665554443

>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor

Probab=95.24  E-value=0.057  Score=47.76  Aligned_cols=44  Identities=16%  Similarity=0.148  Sum_probs=36.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcC--------C--CCCChHHHH-HHhhcCccc
Q psy8885          31 STFVTAFYDAVILYSIALNETIAMG--------G--SQSDGSAIT-RRMWNRTYQ   74 (148)
Q Consensus        31 ~~yaa~LyDAV~LYA~ALnetL~~g--------~--~~~nGt~I~-~~m~nrtF~   74 (148)
                      ..++.+.|||||..|+||++++..+        +  ..-++.++. +.|++.+|.
T Consensus       352 ~~~~~~v~~AVyA~AhaLh~~l~~~c~~~~~~c~~~~~~~~~~l~~~~L~~v~F~  406 (458)
T cd06375         352 ESKIMFVVNAVYAMAHALHNMQRDLCPNTTKLCDAMKPLDGKKLYKEYLLNVSFT  406 (458)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHHHHhcccc
Confidence            4578899999999999999999532        1  236889999 589999999

Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes

>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family

Probab=94.94  E-value=0.086  Score=45.53  Aligned_cols=63  Identities=14%  Similarity=0.142  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCCC---------------CCChHHHHHHhhcCccccc------------ccc---cC
Q psy8885          32 TFVTAFYDAVILYSIALNETIAMGGS---------------QSDGSAITRRMWNRTYQDP------------KSI---LP   81 (148)
Q Consensus        32 ~yaa~LyDAV~LYA~ALnetL~~g~~---------------~~nGt~I~~~m~nrtF~Gv------------ysL---D~   81 (148)
                      .+.+..||||.+.|.|+...++++..               -..|..+.+.|.+.+|+|.            |.+   +.
T Consensus       257 ~~~a~~~DaV~vva~Al~~l~~~~~~~~~~~~~C~~~~~~~~~~G~~l~~~l~~v~~~G~~i~F~~~G~r~~~~ldIinl  336 (362)
T cd06378         257 SLRARVRDGVAIIATGASAMLRQHGFIPEAKGSCYGQAEKRDLPPNTLHRYMMNVTWEGRDLSFTEDGYLVNPKLVVISL  336 (362)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCchHHHHHHhhcceECCCceeECCCCeEccceEEEEEe
Confidence            46889999999999999988764221               1369999999999999997            222   23


Q ss_pred             CC-CCcEEEEEeee
Q psy8885          82 TT-TPLRLVHKYIL   94 (148)
Q Consensus        82 ~~-g~f~vV~~Y~g   94 (148)
                      .. ..++-||.++.
T Consensus       337 ~~~~g~~kVG~W~~  350 (362)
T cd06378         337 NKERVWEEVGKWEN  350 (362)
T ss_pred             cCCCCceEEEEEcC
Confidence            43 35777888763

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in

>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily

Probab=94.50  E-value=0.14  Score=46.13  Aligned_cols=46  Identities=13%  Similarity=0.173  Sum_probs=37.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcC-----------CC--CCChHHHHHHhhcCccccc
Q psy8885          31 STFVTAFYDAVILYSIALNETIAMG-----------GS--QSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        31 ~~yaa~LyDAV~LYA~ALnetL~~g-----------~~--~~nGt~I~~~m~nrtF~Gv   76 (148)
                      ..++.+.|||||..|+||++++.-.           ..  .-++.++.+.+++.+|.|.
T Consensus       394 ~~~~~~v~~AVyAvAhaLh~~~~c~~~~~~~~~~~c~~~~~~~~~~l~~~L~~v~F~~~  452 (510)
T cd06364         394 LRISYNVYLAVYSIAHALQDIYTCTPGKGLFTNGSCADIKKVEAWQVLKHLRHLNFTDN  452 (510)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCHHHHHHHHHhcEEecC
Confidence            4567889999999999999999532           11  2578899999999999976

Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci

>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene

Probab=93.02  E-value=0.29  Score=39.80  Aligned_cols=51  Identities=27%  Similarity=0.347  Sum_probs=41.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---ccccCC
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---KSILPT   82 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---ysLD~~   82 (148)
                      .++.++.+-||++++++.|++++   |.+..++..|.+.|.+.+|.|.   +++|++
T Consensus       271 ~~~~~~~~~yda~~~~~~A~~~a---~~~~~~~~~v~~al~~~~~~~~~g~~~f~~~  324 (336)
T cd06360         271 TPSVYAVQGYDAGQALILALEAV---GGDLSDGQALIAAMAAAKIDSPRGPFTLDKA  324 (336)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHhcCCccCCCcceEECCC
Confidence            46789999999999999999986   4444578889999988888887   446544

This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.

>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family

Probab=92.33  E-value=0.53  Score=41.85  Aligned_cols=45  Identities=18%  Similarity=0.209  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH--------Hc--------CC--CCCChHHHHHHhhcCccccc
Q psy8885          32 TFVTAFYDAVILYSIALNETI--------AM--------GG--SQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        32 ~yaa~LyDAV~LYA~ALnetL--------~~--------g~--~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      ..+++.||||.++|.|+.+..        ..        +.  ...+|..|.+.|.|.+|+|.
T Consensus       267 ~l~ali~DAV~lvA~a~~~l~~~~~~~~l~~~~~~C~~~~~~~~W~~G~~l~~~Lknv~~eGl  329 (382)
T cd06377         267 PLEAYVQDALELVARAVGSATLVQPELALIPATVNCMDLPTKGNESSGQYLARFLANTSFDGR  329 (382)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCcccCCCCCCCCchHHHHHHHHhCccccc
Confidence            349999999999999999742        11        11  22589999999999999997

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in

>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes

Probab=92.13  E-value=0.59  Score=37.76  Aligned_cols=50  Identities=28%  Similarity=0.426  Sum_probs=40.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---ccccCC
Q psy8885          30 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---KSILPT   82 (148)
Q Consensus        30 v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---ysLD~~   82 (148)
                      ++.|+..-||++++.+.|+.++   |.+..+...|.+.|.+..|+|+   +.+|++
T Consensus       269 ~~~~~~~~yda~~~~~~a~~~a---g~~~~~~~~v~~al~~~~~~~~~g~i~f~~~  321 (333)
T cd06332         269 PSVYAAQGYDAAQLLDAALRAV---GGDLSDKDALRAALRAADFDSPRGPFKFNPN  321 (333)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHh---cCCCCCHHHHHHHHhcCceecCccceeECCC
Confidence            5678899999999999999885   5555678889999999899987   556554

This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.

>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)

Probab=91.64  E-value=0.16  Score=42.01  Aligned_cols=35  Identities=20%  Similarity=0.043  Sum_probs=23.6

Q ss_pred             cchhHHHHHHHH-hcCCCCcccCCcchhhHHHHHHHHHHH
Q psy8885           5 GNGYVRLMVKKV-AKEGYNFTFGNESVSTFVTAFYDAVIL   43 (148)
Q Consensus         5 ~~~~F~~eVk~~-a~~pFn~t~~~~~v~~yaa~LyDAV~L   43 (148)
                      .+..|.++.++. ..+|++    ...++.|+++.|||+++
T Consensus       265 ~~~~f~~~~~~~~~~~~~~----~~~p~~~a~~~YDav~~  300 (350)
T cd06366         265 TLQEFTSRWRKRFGNENPE----LTEPSIYALYAYDAVWA  300 (350)
T ss_pred             cHHHHHHHHHHHhcccCcC----cCCCCcccchhhhheee
Confidence            456677777333 333333    23578899999999999

Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.

>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=90.90  E-value=0.82  Score=37.76  Aligned_cols=48  Identities=15%  Similarity=0.314  Sum_probs=39.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---ccccCC
Q psy8885          30 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---KSILPT   82 (148)
Q Consensus        30 v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---ysLD~~   82 (148)
                      ++.+++.-||++++++.|+.+.   |.  .++..|.+.|.+.+|.|+   ..+|++
T Consensus       283 p~~~~~~~yda~~~l~~A~~~a---g~--~~~~~i~~al~~~~~~g~~G~i~f~~~  333 (344)
T cd06345         283 PNYMGASTYDSIYILAEAIERA---GS--TDGDALVEALEKTDFVGTAGRIQFYGD  333 (344)
T ss_pred             CcccchHHHHHHHHHHHHHHHh---cC--CCHHHHHHHHHhCCCcCCceeEEECCC
Confidence            6778889999999999999975   32  468889999999999998   335544

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine)

Probab=90.50  E-value=0.51  Score=38.22  Aligned_cols=42  Identities=14%  Similarity=0.314  Sum_probs=36.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc
Q psy8885          30 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        30 v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      .+.++.+-||++++++.||.++   +  ..++..|.+.|++.+|+|+
T Consensus       271 ~~~~~~~~yda~~~~~~al~~~---~--~~~~~~v~~~l~~~~~~g~  312 (334)
T cd06342         271 PGAYAPYAYDAANVLAEAIKKA---G--STDPAKVADALRKVDFDGV  312 (334)
T ss_pred             CchhHHHHHHHHHHHHHHHHHh---C--CCCHHHHHHHHHhCCCCCc
Confidence            3678999999999999999987   2  3578999999999999996

This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.

>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor

Probab=88.59  E-value=0.76  Score=39.98  Aligned_cols=44  Identities=14%  Similarity=0.129  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC----CCCChHHHHHHhhcCccccc
Q psy8885          33 FVTAFYDAVILYSIALNETIAMGG----SQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        33 yaa~LyDAV~LYA~ALnetL~~g~----~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      ++-+.+|||++.|+||++.+..+.    ...++.++.+.|++.+|.|.
T Consensus       308 ~~~~v~~AVyaiA~Al~~~~~~~~c~~~~~~~~~~l~~~L~~~~f~g~  355 (403)
T cd06361         308 LIHSIQLAVFALAHAIRDLCQERQCQNPNAFQPWELLGQLKNVTFEDG  355 (403)
T ss_pred             hHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCHHHHHHHHheeEEecC
Confidence            345679999999999999764332    13689999999999999997

This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.

>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway

Probab=87.73  E-value=1.2  Score=36.64  Aligned_cols=51  Identities=20%  Similarity=0.283  Sum_probs=40.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---ccccCC
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---KSILPT   82 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---ysLD~~   82 (148)
                      ..+.++..-||++++.+.|+.+.   |.+..+..+|.+.|.+..|.|+   +.+|++
T Consensus       268 ~~~~~~~~~yda~~~~~~A~~~a---g~~~~~~~~v~~al~~~~~~~~~G~~~~~~~  321 (333)
T cd06359         268 LPTLYAAQAYDAAQLLDSAVRKV---GGNLSDKDALRAALRAADFKSVRGAFRFGTN  321 (333)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHh---cCCCCCHHHHHHHHhcCccccCccceEECCC
Confidence            46788899999999999999865   5455678899999988889887   445543

This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.

>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type

Probab=86.96  E-value=3.7  Score=35.39  Aligned_cols=81  Identities=19%  Similarity=0.213  Sum_probs=53.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhc-Cccccc---ccccCCC---------------CCcEEEEE
Q psy8885          31 STFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWN-RTYQDP---KSILPTT---------------TPLRLVHK   91 (148)
Q Consensus        31 ~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~n-rtF~Gv---ysLD~~~---------------g~f~vV~~   91 (148)
                      +.+++.=||++++++.|++++   |.  .|...|...|.+ ..|.|.   +++|+.+               +.+.++.-
T Consensus       273 ~~~a~~~Yda~~~l~~Ai~~A---Gs--~d~~av~~aL~~~~~~~~~~G~i~fd~~~~~~~~~~~v~~~~~~~~~~~~~~  347 (374)
T TIGR03669       273 NQEAENNYFSVYMYKQAVEEA---GT--TDQDAVRDVLESGVEMDAPEGKVCIDGATHHMSHTMRLARADADHNITFVKE  347 (374)
T ss_pred             ChHHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHHcCCeEECCCccEEEcCCCCeeeeeeEEEEEcCCCCEEEEEe
Confidence            567788899999999999965   32  478889988975 557665   4454322               23344433


Q ss_pred             eeecCCCCCCCCCceecCCCchHHH
Q psy8885          92 YILYYVIPLCNHKCTIANSILSQQY  116 (148)
Q Consensus        92 Y~g~g~~PLd~P~CGF~G~~C~~qy  116 (148)
                      +.....+|-++--|-.+-..-+-||
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~  372 (374)
T TIGR03669       348 QEIIPYFLSETVGCDLTKKDDTTQY  372 (374)
T ss_pred             cCCCCcchhhhhCCcCCCCCccccC
Confidence            3333467888888877765554444

Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.

>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=84.69  E-value=1.6  Score=35.98  Aligned_cols=52  Identities=21%  Similarity=0.310  Sum_probs=38.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCC------hHHHHHHhhcCccccc---ccccCC
Q psy8885          30 VSTFVTAFYDAVILYSIALNETIAMGGSQSD------GSAITRRMWNRTYQDP---KSILPT   82 (148)
Q Consensus        30 v~~yaa~LyDAV~LYA~ALnetL~~g~~~~n------Gt~I~~~m~nrtF~Gv---ysLD~~   82 (148)
                      .+.+++.-|||+++++.||.++...++ ..+      ...|...|.+.+|.|+   +.+|++
T Consensus       273 p~~~~~~~yda~~~~~~A~~~a~~~~~-~~~~~~~~~~~~l~~~l~~~~~~g~~G~v~f~~~  333 (344)
T cd06348         273 PPQFSAQAFDAVQVVAEALKRLNQKQK-LAELPLPELRTALNAALLSGQYDTPLGEISFTPD  333 (344)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCCCc-cccchhhhHHHHHHHHHhccCCccceeeeEECCC
Confidence            467788899999999999999875443 111      4577788888899987   445554

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=82.96  E-value=1.8  Score=35.01  Aligned_cols=43  Identities=23%  Similarity=0.361  Sum_probs=34.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhc-Cccccc
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWN-RTYQDP   76 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~n-rtF~Gv   76 (148)
                      .++.+++.-||++++++.||.++   |.  .++..|.+.|.+ .+|.|+
T Consensus       271 ~~~~~~~~~yda~~~~~~Al~~a---g~--~~~~~v~~~l~~~~~~~g~  314 (334)
T cd06347         271 EPDAFAALGYDAYYLLADAIERA---GS--TDPEAIRDALAKTKDFDGV  314 (334)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHHhCCCcccc
Confidence            46788899999999999999875   32  278899888764 468886

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins

Probab=81.95  E-value=5.3  Score=32.80  Aligned_cols=51  Identities=16%  Similarity=0.210  Sum_probs=37.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---ccccC
Q psy8885          30 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---KSILP   81 (148)
Q Consensus        30 v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---ysLD~   81 (148)
                      .+.++..-||++.+.+.||.++.......++ ..+.+.|.+.+|.|+   +++|+
T Consensus       279 p~~~~~~~y~a~~~l~~a~~~a~~~~~~~~~-~~v~~al~~~~~~~~~G~~~f~~  332 (346)
T cd06330         279 PTYGAYGAYQAVMALAAAVEKAGATDGGAPP-EQIAAALEGLSFETPGGPITMRA  332 (346)
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCCCCcH-HHHHHHHcCCCccCCCCceeeec
Confidence            4567888999999999999987654443333 568888888788886   44544

Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	148
1dp4_A	435	Dimerized Hormone Binding Domain Of The Atrial Natr		1e-09
1yk1_A	479	Structure Of Natriuretic Peptide Receptor-C Complex		4e-08
1yk0_B	480	Structure Of Natriuretic Peptide Receptor-c Complex		4e-08
1jdn_A	441	Crystal Structure Of Hormone Receptor Length = 441		5e-08

>pdb|1DP4|A Chain A, Dimerized Hormone Binding Domain Of The Atrial Natriuretic Peptide Receptor Length = 435

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 42/62 (67%)
Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
           +K +A + +NFT  +   +    +F+D ++LY  A+ ET+A GG+ +DG  IT+RMWNR+
Sbjct: 297 LKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRS 356
Query: 73  YQ 74
           +Q
Sbjct: 357 FQ 358

>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With Brain Natriuretic Peptide Length = 479

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 16  VAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQ 74
           V K+G N     + V+ FV  F+DA++LY +AL+E +  G S+ DG  I ++ WNRT++
Sbjct: 342 VEKQGLNM---EDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFE 397

>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor Length = 441

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 16  VAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQ 74
           V K+G N     + V+ FV  F+DA++LY +AL+E +  G S+ DG  I ++ WNRT++
Sbjct: 300 VEKQGLNM---EDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFE 355

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	148
1dp4_A	435	Atrial natriuretic peptide receptor A; periplasmic	1e-13
1jdp_A	441	NPR-C, atrial natriuretic peptide clearance recept	5e-10

>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Length = 435

 Score = 66.0 bits (160), Expect = 1e-13
 Identities = 25/64 (39%), Positives = 42/64 (65%)

Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
           +K +A + +NFT  +   +    +F+D ++LY  A+ ET+A GG+ +DG  IT+RMWNR+
Sbjct: 297 LKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRS 356

Query: 73  YQDP 76
           +Q  
Sbjct: 357 FQGV 360

>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Length = 441

 Score = 55.5 bits (133), Expect = 5e-10
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 19  EGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQ 74
           E        + V+ FV  F+DA++LY +AL+E +  G S+ DG  I ++ WNRT++
Sbjct: 301 EKQGLNM-EDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFE 355

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
1dp4_A	435	Atrial natriuretic peptide receptor A; periplasmic	99.63
1jdp_A	441	NPR-C, atrial natriuretic peptide clearance recept	98.65
4gpa_A	389	Glutamate receptor 4; PBP fold, ligand-gated ION c	98.5
4f11_A	433	Gamma-aminobutyric acid type B receptor subunit 2;	98.35
3saj_A	384	Glutamate receptor 1; rossman fold, ION channel, m	98.05
3o21_A	389	Glutamate receptor 3; periplasmatic binding protei	97.91
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	97.88
3hsy_A	376	Glutamate receptor 2; ligand-gated ION channel, sy	97.88
3h6g_A	395	Glutamate receptor, ionotropic kainate 2; membrane	97.71
3om0_A	393	Glutamate receptor, ionotropic kainate 5; membrane	97.51
3i09_A	375	Periplasmic branched-chain amino acid-binding Pro;	97.25
3n0w_A	379	ABC branched chain amino acid family transporter,	96.95
2e4u_A	555	Metabotropic glutamate receptor 3; G-protein-coupl	96.81
3h5l_A	419	Putative branched-chain amino acid ABC transporter	96.75
4evq_A	375	Putative ABC transporter subunit, substrate-bindi	96.67
3td9_A	366	Branched chain amino acid ABC transporter, peripl	96.29
3mq4_A	481	Mglur7, metabotropic glutamate receptor 7; glutama	96.17
3snr_A	362	Extracellular ligand-binding receptor; structural	95.86
3qek_A	384	NMDA glutamate receptor subunit; amino terminal do	95.84
3sg0_A	386	Extracellular ligand-binding receptor; structural	95.79
3qel_B	364	Glutamate [NMDA] receptor subunit epsilon-2; ION c	95.56
4eyg_A	368	Twin-arginine translocation pathway signal; PSI-bi	95.53
3n0x_A	374	Possible substrate binding protein of ABC transpo	94.86
3ipc_A	356	ABC transporter, substrate binding protein (amino;	94.54
3i45_A	387	Twin-arginine translocation pathway signal protei;	94.49
3hut_A	358	Putative branched-chain amino acid ABC transporter	94.32
1usg_A	346	Leucine-specific binding protein; leucine-binding	94.12
3eaf_A	391	ABC transporter, substrate binding protein; PSI2,	93.87
4f06_A	371	Extracellular ligand-binding receptor; PSI-biology	93.16
1pea_A	385	Amidase operon; gene regulator, receptor, binding	92.4
3sm9_A	479	Mglur3, metabotropic glutamate receptor 3; structu	92.32
3lop_A	364	Substrate binding periplasmic protein; protein str	91.38
3ks9_A	496	Mglur1, metabotropic glutamate receptor 1; glutama	90.03
3lkb_A	392	Probable branched-chain amino acid ABC transporter	88.85
2lw9_A	51	Unconventionnal myosin-X; MYO10 anti-CC, motor pro	87.83
4gnr_A	353	ABC transporter substrate-binding protein-branche	87.6

>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*

Probab=99.63  E-value=6.8e-16  Score=127.65  Aligned_cols=109  Identities=33%  Similarity=0.457  Sum_probs=79.8

Q ss_pred             chhHHHHHHHHhcCCCCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---------
Q psy8885           6 NGYVRLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---------   76 (148)
Q Consensus         6 ~~~F~~eVk~~a~~pFn~t~~~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---------   76 (148)
                      ...|.++.+.....+|+|+.+...++.++++.||||+++|+||++++..+++..+|.+|.+.|++.+|.|+         
T Consensus       290 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~  369 (435)
T 1dp4_A          290 YLEFLKQLKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRN  369 (435)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHTTTTEEEEETTEEEEECTT
T ss_pred             HHHHHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhCceeeccceeEEECCC
Confidence            34566666444445677876555688899999999999999999999887766799999999999999987         


Q ss_pred             ------cc---ccCCCCCcEEEEEeeec----------------CCCCCCCCCceecCC--CchH
Q psy8885          77 ------KS---ILPTTTPLRLVHKYILY----------------YVIPLCNHKCTIANS--ILSQ  114 (148)
Q Consensus        77 ------ys---LD~~~g~f~vV~~Y~g~----------------g~~PLd~P~CGF~G~--~C~~  114 (148)
                            |.   ++..+|.+++|+.|+..                +.+|.|.|+|||+|+  .|+.
T Consensus       370 g~~~~~~~i~~~~~~~g~~~~vg~~~~~~~~l~~~~~~~i~W~~~~~P~~~p~Cgf~~~~~~C~~  434 (435)
T 1dp4_A          370 GDRDTDFSLWDMDPETGAFRVVLNYNGTSQELMAVSEHKLYWPLGYPPPDVPKCGFDNEDPACNQ  434 (435)
T ss_dssp             SBBCCCEEEEEECTTTCCEEEEEEECTTTCCEEESTTCCCCCTTSSCCCSSCTTCC---------
T ss_pred             CCccceeEEEEecCCCCcEEEEEEecCCCceEEEcCCceeeCCCCCCCCCCCCCCcCCCcCCCCC
Confidence                  22   12245678999988631                479999999999999  9974

>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*

Probab=98.65  E-value=8.3e-08  Score=79.79  Aligned_cols=87  Identities=32%  Similarity=0.517  Sum_probs=63.7

Q ss_pred             cchhHHHHHHH-HhcCCCCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc-------
Q psy8885           5 GNGYVRLMVKK-VAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP-------   76 (148)
Q Consensus         5 ~~~~F~~eVk~-~a~~pFn~t~~~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv-------   76 (148)
                      ++..|.+.++. ....+|+   ....++.|+++.||||+++|+||++++..|.+..+|.+|.+.|++.+|.|+       
T Consensus       288 ~~~~F~~~~~~~~~~~~~~---~~~~~~~~~~~~YdAv~~~A~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd  364 (441)
T 1jdp_A          288 EFEKFSMEVKSSVEKQGLN---MEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSID  364 (441)
T ss_dssp             HHHHHHHHHHHHHHTTTCC---CCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEEC
T ss_pred             hHHHHHHHHHHHHhhCCCC---ccchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCCeeECCccceEEC
Confidence            45667777733 3333354   112357799999999999999999999877656799999999999999987       


Q ss_pred             --------ccc-c---CCCCCcEEEEEeee
Q psy8885          77 --------KSI-L---PTTTPLRLVHKYIL   94 (148)
Q Consensus        77 --------ysL-D---~~~g~f~vV~~Y~g   94 (148)
                              |.+ +   ..+|.++.|+.|+.
T Consensus       365 ~~Gd~~~~~~I~~~~~~~~g~~~~VG~~~~  394 (441)
T 1jdp_A          365 ANGDRYGDFSVIAMTDVEAGTQEVIGDYFG  394 (441)
T ss_dssp             TTSBBCCEEEEEEEEETTTTEEEEEEEEET
T ss_pred             CCCCccccEEEEecccCCCCceEEEEEEcC
Confidence                    221 1   23456888999884

>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}

Probab=98.50  E-value=5.6e-07  Score=72.12  Aligned_cols=50  Identities=12%  Similarity=0.082  Sum_probs=44.2

Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHcCCCC-----------------CChHHHHHHhhcCccccc
Q psy8885          27 NESVSTFVTAFYDAVILYSIALNETIAMGGSQ-----------------SDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        27 ~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~-----------------~nGt~I~~~m~nrtF~Gv   76 (148)
                      ...++.|+++.||||+++|+||+++++.+.+.                 .+|..|.+.|++.+|.|+
T Consensus       270 ~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~  336 (389)
T 4gpa_A          270 ETPPKYTSALTYDGVLVMAETFRSLRRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGL  336 (389)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEET
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCccccccCCCcccchHHHHHHHHHhCceecC
Confidence            45789999999999999999999999886532                 378999999999999998

>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*

Probab=98.35  E-value=5.3e-07  Score=74.55  Aligned_cols=76  Identities=16%  Similarity=0.106  Sum_probs=58.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHc---CCCC-----------CChHHHHHHhhcCccccc--------------cc-c
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAM---GGSQ-----------SDGSAITRRMWNRTYQDP--------------KS-I   79 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~---g~~~-----------~nGt~I~~~m~nrtF~Gv--------------ys-L   79 (148)
                      .++.|+++.||||+++|+||+++...   +...           .+|..|.+.|++.+|.|+              |. +
T Consensus       309 ~~~~~a~~~YDAv~~la~Al~~a~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f~~Gd~~~~~~I~  388 (433)
T 4f11_A          309 GPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRNGERMGTIKFT  388 (433)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEEETTEEECEEEEE
T ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEEecCceeeeEEEE
Confidence            56788999999999999999999764   1111           248999999999999997              22 2


Q ss_pred             cCCCCCcEEEEEeeec---------------CCCCCCCCC
Q psy8885          80 LPTTTPLRLVHKYILY---------------YVIPLCNHK  104 (148)
Q Consensus        80 D~~~g~f~vV~~Y~g~---------------g~~PLd~P~  104 (148)
                      +...+.++.|+.|+..               +.||.|.|.
T Consensus       389 ~~~~g~~~~VG~~~~~~~~l~~~~~~i~W~~~~~P~D~~~  428 (433)
T 4f11_A          389 QFQDSREVKVGEYNAVADTLEIINDTIRFQGSEPPKDDYK  428 (433)
T ss_dssp             EEETTEEEEEEEEETTTTEEEECTTTCCCSSSSCCCSSGG
T ss_pred             EEECCceEEEEEEECCCCeEEEeCCceECCCCCCCCCccc
Confidence            3345789999999721               568999885

>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}

Probab=98.05  E-value=9.1e-06  Score=66.54  Aligned_cols=48  Identities=15%  Similarity=0.104  Sum_probs=42.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCCC-----------------CChHHHHHHhhcCccccc
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGSQ-----------------SDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~-----------------~nGt~I~~~m~nrtF~Gv   76 (148)
                      .++.|+++.||||+++|+||+++.+++++.                 .+|..|.+.|++.+|+|+
T Consensus       271 ~~~~~aa~~YDav~~~a~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~  335 (384)
T 3saj_A          271 RPKYTSALTYDGVKVMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGL  335 (384)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEET
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCCCCCCCCCCCCcCCcHHHHHHHHhCcCccc
Confidence            568899999999999999999998865432                 689999999999999998

>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A

Probab=97.91  E-value=2.1e-05  Score=65.10  Aligned_cols=48  Identities=17%  Similarity=0.036  Sum_probs=41.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCC-----------------CCChHHHHHHhhcCccccc
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGS-----------------QSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~-----------------~~nGt~I~~~m~nrtF~Gv   76 (148)
                      .++.|+++.||||+++|+||+++...+.+                 ..+|..|.+.|++.+|+|+
T Consensus       274 ~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~  338 (389)
T 3o21_A          274 PLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGM  338 (389)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CCSCSSSCCCTTTTHHHHHHHHTCCEEET
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCcCCCCCCCCCCCcHHHHHHHHhCccccc
Confidence            57899999999999999999999865421                 2579999999999999998

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=97.88  E-value=2.4e-05  Score=69.83  Aligned_cols=66  Identities=15%  Similarity=0.076  Sum_probs=51.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHcCCCC-----------------CChHHHHHHhhcCccccc---cccc-------
Q psy8885          28 ESVSTFVTAFYDAVILYSIALNETIAMGGSQ-----------------SDGSAITRRMWNRTYQDP---KSIL-------   80 (148)
Q Consensus        28 ~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~-----------------~nGt~I~~~m~nrtF~Gv---ysLD-------   80 (148)
                      ..++.|+++.||||+++|+||+++...+++.                 .+|.+|.+.|.+.+|+|+   +..|       
T Consensus       267 ~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~  346 (823)
T 3kg2_A          267 ATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRIN  346 (823)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCS
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccc
Confidence            3578899999999999999999998865432                 589999999999999998   2222       


Q ss_pred             -------CCCCCcEEEEEee
Q psy8885          81 -------PTTTPLRLVHKYI   93 (148)
Q Consensus        81 -------~~~g~f~vV~~Y~   93 (148)
                             ...+.+..|+.|+
T Consensus       347 ~~~~I~~~~~~g~~~vg~w~  366 (823)
T 3kg2_A          347 YTINIMELKTNGPRKIGYWS  366 (823)
T ss_dssp             CEEEEEEECSSCEEEEEEEE
T ss_pred             cEEEEEEEcCCCCeeEEEEc
Confidence                   2345566777776

>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A

Probab=97.88  E-value=1.4e-05  Score=65.35  Aligned_cols=48  Identities=17%  Similarity=0.140  Sum_probs=41.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCC----------------C-CChHHHHHHhhcCccccc
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGS----------------Q-SDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~----------------~-~nGt~I~~~m~nrtF~Gv   76 (148)
                      .++.|+++.||||+++|.||+++.+.+.+                + .+|..|.+.|++.+|+|+
T Consensus       268 ~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~  332 (376)
T 3hsy_A          268 TIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGL  332 (376)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEET
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCC
Confidence            58899999999999999999999875422                1 578899999999999998

>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*

Probab=97.71  E-value=4.7e-05  Score=62.10  Aligned_cols=76  Identities=12%  Similarity=-0.021  Sum_probs=51.2

Q ss_pred             chhHHHHHHH--HhcCCCCcccC-CcchhhHHHHHHHHHHHHHHHHHHHHHcCC---------CCCChHHHHHHhhcCcc
Q psy8885           6 NGYVRLMVKK--VAKEGYNFTFG-NESVSTFVTAFYDAVILYSIALNETIAMGG---------SQSDGSAITRRMWNRTY   73 (148)
Q Consensus         6 ~~~F~~eVk~--~a~~pFn~t~~-~~~v~~yaa~LyDAV~LYA~ALnetL~~g~---------~~~nGt~I~~~m~nrtF   73 (148)
                      +..|.+.-++  ...+|+.++.. ...++.|+++.||||+++|.||+++-+.++         ...+|..|.+.|++.+|
T Consensus       258 ~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~~~~~~~c~~~~~~~~~~~l~~al~~~~~  337 (395)
T 3h6g_A          258 VSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHW  337 (395)
T ss_dssp             HHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTCCCCCCCTTSCCCCTTHHHHHHHHHHCEE
T ss_pred             HHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcCCCcCCCCCCCCcCcccHHHHHHHhcCCC
Confidence            4456665532  24456655432 235789999999999999999998743221         23699999999999999


Q ss_pred             ccc---ccccC
Q psy8885          74 QDP---KSILP   81 (148)
Q Consensus        74 ~Gv---ysLD~   81 (148)
                      +|+   +.+|+
T Consensus       338 ~G~tG~i~fd~  348 (395)
T 3h6g_A          338 EGLTGRITFNK  348 (395)
T ss_dssp             EETTEEEECCT
T ss_pred             cCcceeeEecC
Confidence            998   44554

>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A

Probab=97.51  E-value=0.00037  Score=56.85  Aligned_cols=48  Identities=15%  Similarity=0.126  Sum_probs=40.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCC------------CCCChHHHHHHhhcCccccc
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGG------------SQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~------------~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      .++.|+++.||||+++|+||+++.+.+.            ...+|..|.+.|++.+|+|+
T Consensus       280 ~p~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~  339 (393)
T 3om0_A          280 GPALSAALMFDAVHVVVSAVRELNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGL  339 (393)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHTTTSCCCCCCCCTTCCCCCTTHHHHHHHHTTCCEEET
T ss_pred             CCchHHHHHHhHHHHHHHHHHHHhhcccCcCCCcCCCCCCcccCchHHHHHHHhCCCCCc
Confidence            4678999999999999999998854221            12699999999999999998

>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}

Probab=97.25  E-value=0.00086  Score=53.88  Aligned_cols=74  Identities=16%  Similarity=0.188  Sum_probs=55.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---ccccC----------------CC-----C
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---KSILP----------------TT-----T   84 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---ysLD~----------------~~-----g   84 (148)
                      .++.|++.-|||+++++.||+++   |.  .|+..|.+.|.+.+|.|+   ..+|+                ..     .
T Consensus       275 ~p~~~a~~~Yda~~~~~~Al~~a---g~--~~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~~~~~i~~v~~~~~~~~~~~  349 (375)
T 3i09_A          275 MPSSLQAADYSSVTTYLKAVQAA---GS--TDSDKVMAQLKKMKIDDFYAKGYIRTDGSMIHDMYLMEVKKPSESKEPWD  349 (375)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TS--CCHHHHHHHHTTSCEESSSCEEEECTTSBEECCEEEEEECCGGGCCSTTC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHhCCCccCCCCceEECCCCCeeeeeEEEEEecccccccccc
Confidence            45789999999999999999987   32  589999999999988876   11221                11     1


Q ss_pred             CcEEEEEeeec-CCCCCCCCCcee
Q psy8885          85 PLRLVHKYILY-YVIPLCNHKCTI  107 (148)
Q Consensus        85 ~f~vV~~Y~g~-g~~PLd~P~CGF  107 (148)
                      .+++|..+.+. ..||++.+.|-+
T Consensus       350 ~~~~~~~~~~~~~~~p~~~~~C~~  373 (375)
T 3i09_A          350 YYKVVATIPGEQAFTTKQETRCAL  373 (375)
T ss_dssp             CEEEEEEECHHHHSCCTTTCCCTT
T ss_pred             hheeeeecCHHHhcCCcccCCCCC
Confidence            26777777764 458999999954

>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}

Probab=96.95  E-value=0.0013  Score=53.06  Aligned_cols=74  Identities=18%  Similarity=0.239  Sum_probs=54.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc----ccccC----------------CC-----
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP----KSILP----------------TT-----   83 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv----ysLD~----------------~~-----   83 (148)
                      .++.+++.-|||+++++.||+++   |.  .|+..|.+.|.+.+|.|.    ..+|+                ..     
T Consensus       278 ~p~~~~~~~Yda~~~~~~Al~~a---g~--~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~~~~~i~~~~~~~~~~~~~  352 (379)
T 3n0w_A          278 MPTNNQAGGYSAALQYLKAVNAI---GS--KDPQKVFAYLKTIKFDDAVTRHGTLRPGGRLVRDMYLVRAKKPEDQKGDW  352 (379)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TC--CCHHHHHHHHTTCCBCSSSCCSBEECTTSBEECCEEEEEECCGGGCCSTT
T ss_pred             CCChHHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHhcCCccccCCCceeECCCCCcccceEEEEEEchhhccCcc
Confidence            35789999999999999999987   32  589999999999887754    11221                11     


Q ss_pred             CCcEEEEEeeec-CCCCCCCCCcee
Q psy8885          84 TPLRLVHKYILY-YVIPLCNHKCTI  107 (148)
Q Consensus        84 g~f~vV~~Y~g~-g~~PLd~P~CGF  107 (148)
                      ..+++|..+.+. ..||++.|.|-.
T Consensus       353 ~~~~~v~~~~~~~~~~p~~~~~c~~  377 (379)
T 3n0w_A          353 DYYDVVATIGPEQAFGPLSESRCAM  377 (379)
T ss_dssp             CCEEEEEEECHHHHHCCGGGCCCGG
T ss_pred             chhheecccCHHHhcCCccccCCCC
Confidence            126777777764 358999999964

>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*

Probab=96.81  E-value=0.0012  Score=57.08  Aligned_cols=45  Identities=13%  Similarity=0.095  Sum_probs=37.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcC----------CCCCChHHHHH-HhhcCccc
Q psy8885          30 VSTFVTAFYDAVILYSIALNETIAMG----------GSQSDGSAITR-RMWNRTYQ   74 (148)
Q Consensus        30 v~~yaa~LyDAV~LYA~ALnetL~~g----------~~~~nGt~I~~-~m~nrtF~   74 (148)
                      ...++...||||+++|+||+++....          ....+|.+|.+ .|++.+|.
T Consensus       362 ~~~~~~~~YdAVya~A~AL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~v~f~  417 (555)
T 2e4u_A          362 QESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCDAMKILDGKKLYKEYLLKIQFT  417 (555)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHCTTCSSCCGGGTSCCHHHHHHHHTTCEEEC
T ss_pred             ccccchhhHHHHHHHHHHHHHHHhhhcCCCCccccccCCCCcccccHHhHhceeec
Confidence            45688999999999999999997621          12368889998 89999998

>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}

Probab=96.75  E-value=0.00082  Score=55.10  Aligned_cols=46  Identities=20%  Similarity=0.221  Sum_probs=38.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc--CCCCCChHHHHHHhhcCccccc
Q psy8885          31 STFVTAFYDAVILYSIALNETIAM--GGSQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        31 ~~yaa~LyDAV~LYA~ALnetL~~--g~~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      +.+++.-|||+++++.||+++...  .+++.++..|.+.|++.+|.|+
T Consensus       302 ~~~a~~~Yda~~~~~~a~~~a~~~~~~g~~~~~~~l~~al~~~~~~g~  349 (419)
T 3h5l_A          302 TASGCQTYSALYAYSIAAALAGGPGAPYDDVQNKAVADRLRSLIFRGP  349 (419)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHHCEEEET
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCCccCCCccCHHHHHHHHHhCCcccC
Confidence            569999999999999999987542  2234688999999999999998

>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A

Probab=96.67  E-value=0.005  Score=49.01  Aligned_cols=45  Identities=18%  Similarity=0.319  Sum_probs=38.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      .++.|++.-|||+++++.||+++   |.+..++..|.+.|.+.+|+|+
T Consensus       285 ~p~~~~~~~yda~~~~~~al~~~---g~~~~~~~~l~~~l~~~~~~g~  329 (375)
T 4evq_A          285 PPDVFAVQGWDAGQLLDAGVKAV---GGDVAKRKELNAAMAAASFASP  329 (375)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHT---TTCTTCHHHHHHHHHTCEEEET
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHhcCCcccC
Confidence            35789999999999999999975   4445789999999999999998

>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}

Probab=96.29  E-value=0.0093  Score=47.50  Aligned_cols=42  Identities=17%  Similarity=0.270  Sum_probs=37.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCc-cccc
Q psy8885          30 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT-YQDP   76 (148)
Q Consensus        30 v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrt-F~Gv   76 (148)
                      ++.+++.-|||+++++.||+++   |.  .++..|.+.|.+.+ |.|+
T Consensus       286 p~~~~~~~yda~~~~~~al~~a---g~--~~~~~~~~~l~~~~~~~g~  328 (366)
T 3td9_A          286 PAALNALGYDAYMVLLDAIERA---GS--FDREKIAEEIRKTRNFNGA  328 (366)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH---TS--CCHHHHHHHHTTCCSEEET
T ss_pred             CchhHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHHhCCCCccc
Confidence            5789999999999999999987   22  68999999999997 9998

>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*

Probab=96.17  E-value=0.0095  Score=50.70  Aligned_cols=45  Identities=20%  Similarity=0.154  Sum_probs=35.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCC----------CCCChHHHHHHhhcCccccc
Q psy8885          32 TFVTAFYDAVILYSIALNETIAMGG----------SQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        32 ~yaa~LyDAV~LYA~ALnetL~~g~----------~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      ..+...|||||++|+||++++....          ...++.++.+.|++.+|.+.
T Consensus       374 ~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~F~~~  428 (481)
T 3mq4_A          374 GKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQAGGKKLLKYIRNVNFNGS  428 (481)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHTSCHHHHHHHHHTCEEECT
T ss_pred             chhhhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCcCHHHHHHHHhcceeecC
Confidence            4455799999999999999986321          13467789999999999865

>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*

Probab=95.84  E-value=0.014  Score=47.28  Aligned_cols=45  Identities=20%  Similarity=0.257  Sum_probs=35.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHcC------------CCC-CChHHHHHHhhcCcc-ccc
Q psy8885          32 TFVTAFYDAVILYSIALNETIAMG------------GSQ-SDGSAITRRMWNRTY-QDP   76 (148)
Q Consensus        32 ~yaa~LyDAV~LYA~ALnetL~~g------------~~~-~nGt~I~~~m~nrtF-~Gv   76 (148)
                      ..++..||||++.|+||++++..+            ..+ ..|..+.+.+++.+| .|+
T Consensus       276 ~~~~~~YdAV~~~a~Al~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~  334 (384)
T 3qek_A          276 NESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGV  334 (384)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEET
T ss_pred             chhHHHHHHHHHHHHHHHHHHhccCCCCCCCccccCCCccccHHHHHHHHhcCCccCCC
Confidence            457899999999999999998632            112 478899998988888 765

>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*

Probab=95.79  E-value=0.011  Score=46.83  Aligned_cols=53  Identities=15%  Similarity=0.241  Sum_probs=43.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcC--CCCCChHHHHHHhhcC-ccccc---ccccC
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMG--GSQSDGSAITRRMWNR-TYQDP---KSILP   81 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g--~~~~nGt~I~~~m~nr-tF~Gv---ysLD~   81 (148)
                      .++.|+++-|||+++++.||+++.+.+  ++..++..|.+.|.+. .|.|+   +++|+
T Consensus       303 ~p~~~~~~~yda~~~~~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~  361 (386)
T 3sg0_A          303 APTIFGVHLWDSMTLVENAIPAALKAAKPGTPEFRAAIRDQIEKSKDLALNNGLSNMTP  361 (386)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHCCTTSHHHHHHHHHHHTTCCSEEETTEEECCCS
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHhccCccccceeEEECC
Confidence            357899999999999999999998876  3445688999999888 79997   44554

>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*

Probab=95.56  E-value=0.016  Score=47.85  Aligned_cols=45  Identities=11%  Similarity=0.215  Sum_probs=37.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCCC--------------C-CChHHHHHHhhcCccccc
Q psy8885          32 TFVTAFYDAVILYSIALNETIAMGGS--------------Q-SDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        32 ~yaa~LyDAV~LYA~ALnetL~~g~~--------------~-~nGt~I~~~m~nrtF~Gv   76 (148)
                      .++++.||||++.|+|+.++..+++.              + .+|..+.+.|.+.+|+|.
T Consensus       258 ~~~~~~yDaV~~~A~A~~~~~~~~~~i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl  317 (364)
T 3qel_B          258 GLPARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR  317 (364)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTSCCCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc
Confidence            57889999999999999998875311              1 489999999999999997

>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*

Probab=95.53  E-value=0.02  Score=45.30  Aligned_cols=44  Identities=25%  Similarity=0.398  Sum_probs=38.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      ..+.+++.-|||++++|.||+++   | ...++..|.+.|.+.+|.|+
T Consensus       277 ~p~~~~~~~yda~~~~~~al~~~---g-~~~~~~~l~~al~~~~~~g~  320 (368)
T 4eyg_A          277 RPGFMAVGGYDGIHLVFEALKKT---G-GKADGDSLIAAMKGMKWESP  320 (368)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHT---T-TCCSHHHHHHHHTTCEEEET
T ss_pred             CCChHHHHHHHHHHHHHHHHHHh---C-CCCCHHHHHHHHHcCCcccC
Confidence            45789999999999999999986   3 23589999999999999987

>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B

Probab=94.86  E-value=0.066  Score=43.08  Aligned_cols=49  Identities=12%  Similarity=0.181  Sum_probs=40.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---ccccCC
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---KSILPT   82 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---ysLD~~   82 (148)
                      .++.+++.-|||+++++.||+++   |.  .|+..|.+.|.+.+|.|+   +.+|++
T Consensus       280 ~p~~~a~~~Yda~~~l~~Al~~a---g~--~~~~~v~~aL~~~~~~g~~G~i~f~~~  331 (374)
T 3n0x_A          280 PPDFFTAGGFSAAMAVVTAVQKA---KS--TDTEKLIAAMEGMEFDTPKGKMVFRKE  331 (374)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TS--CCHHHHHHHHTTCEEEETTEEEEECTT
T ss_pred             CCChhHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHhcCCccCCCCCEEECcc
Confidence            45789999999999999999987   32  689999999999999998   335543

>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A

Probab=94.54  E-value=0.047  Score=43.09  Aligned_cols=42  Identities=10%  Similarity=0.168  Sum_probs=37.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc
Q psy8885          30 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        30 v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      ++.|++.-|||+++++.||+++   |.  .++..|.+.|.+.+|.|+
T Consensus       272 p~~~~~~~yda~~~~~~al~~a---g~--~~~~~~~~~l~~~~~~g~  313 (356)
T 3ipc_A          272 PEAYTLYSYAAMQAIAGAAKAA---GS--VEPEKVAEALKKGSFPTA  313 (356)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHH---TC--CCHHHHHHHHTTCCBCCT
T ss_pred             cchhHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHHhCCCCCc
Confidence            4568999999999999999987   32  689999999999999998

>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}

Probab=94.49  E-value=0.076  Score=42.70  Aligned_cols=42  Identities=10%  Similarity=0.254  Sum_probs=37.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc
Q psy8885          30 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        30 v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      .+.+++.-|||++++|.||+++   |  ..++..|.+.|.+.+|.|+
T Consensus       282 p~~~~~~~Yda~~~~a~Al~~a---g--~~~~~~v~~al~~~~~~g~  323 (387)
T 3i45_A          282 PFVGSLVGYNTLTAMAVAFEKA---G--GTESETLVETLKDMAFSTP  323 (387)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH---T--SCCHHHHHHHTTTCEEEET
T ss_pred             CCcHHHHHHHHHHHHHHHHHHh---C--CCCHHHHHHHHhcCCCcCC
Confidence            4678999999999999999987   3  2689999999999999997

>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}

Probab=94.32  E-value=0.079  Score=41.79  Aligned_cols=49  Identities=18%  Similarity=0.208  Sum_probs=39.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHH-HHHHhhcC-ccccc---ccccCC
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSA-ITRRMWNR-TYQDP---KSILPT   82 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~-I~~~m~nr-tF~Gv---ysLD~~   82 (148)
                      .++.+++.-|||++++|.||+++   |  ..++.+ |.+.|.+. +|.|+   +.+|++
T Consensus       274 ~p~~~~~~~yda~~~~~~al~~a---g--~~~~~~~~~~~l~~~~~~~g~~G~~~f~~~  327 (358)
T 3hut_A          274 IPTLFAAHGYDAVGIMLAAVGRA---G--PEVTRESLRDALAATDRYAGVTGITRFDPE  327 (358)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---C--TTCCHHHHHHHHHTCCSEEETTEEEEECTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh---C--CCChHHHHHHHHHhcCCCcCCceeeEECCC
Confidence            45789999999999999999986   3  246788 99999988 89998   445543

>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A

Probab=94.12  E-value=0.044  Score=42.84  Aligned_cols=43  Identities=21%  Similarity=0.240  Sum_probs=36.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      ..+.++++-|||++++|.||+++   |  ..++..|.+.|.+.+|.|+
T Consensus       272 ~~~~~~~~~yda~~~~~~al~~~---g--~~~~~~l~~~l~~~~~~g~  314 (346)
T 1usg_A          272 PSGPYVWITYAAVQSLATALERT---G--SDEPLALVKDLKANGANTV  314 (346)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---C--CCCHHHHHHHHHHHCEEET
T ss_pred             CCchhHHHHHHHHHHHHHHHHHh---C--CCCHHHHHHHHHhCCCccc
Confidence            35679999999999999999987   3  2478999999988889987

>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}

Probab=93.87  E-value=0.016  Score=46.84  Aligned_cols=47  Identities=15%  Similarity=0.150  Sum_probs=37.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccc--cc
Q psy8885          30 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQ--DP   76 (148)
Q Consensus        30 v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~--Gv   76 (148)
                      ++.+++.-|||+++++.||+++.+.|....++..|.+.|.+..|.  |+
T Consensus       286 ~~~~~~~~yda~~~l~~Al~~a~~~g~~~~~~~~v~~aL~~~~~~~~G~  334 (391)
T 3eaf_A          286 INLRVVQGFVNVWLLIKAIESVTSQDLQERGGEALKEALEANTFDLGGI  334 (391)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHTHHHHHHHHHHCCBCSTTC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhCCCCCCCc
Confidence            468999999999999999998754441124788999999888787  65

>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*

Probab=93.16  E-value=0.13  Score=41.47  Aligned_cols=51  Identities=27%  Similarity=0.295  Sum_probs=41.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---ccccCCC
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---KSILPTT   83 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---ysLD~~~   83 (148)
                      .++.|+++-|||+++++.||+++   +++ .|+..|...|.+.+|.|+   +++|+++
T Consensus       280 ~~~~~a~~~Yda~~~l~~Ai~~~---ag~-~d~~~v~~al~~~~~~~~~G~i~fd~~~  333 (371)
T 4f06_A          280 EVTMTSVAAYDGARLIYKMIEAT---SGK-SDPDKAIAAVKGMKWVSPRGEVSIDPET  333 (371)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHT---TTS-CCHHHHHHHHTTCEEEETTEEEEECTTT
T ss_pred             CccchHHHHHHHHHHHHHHHHHh---cCC-CCHHHHHHHHhCCCeeCCcEEEEEcCCC
Confidence            46788999999999999999754   332 589999999999999987   5567654

>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A

Probab=92.40  E-value=0.18  Score=40.59  Aligned_cols=43  Identities=16%  Similarity=0.332  Sum_probs=37.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      ..+.+++.-|||++++|.||+++   |.  .++..|.+.|.+.+|.|+
T Consensus       281 ~~~~~~~~~yda~~~~~~Al~~a---g~--~~~~~l~~al~~~~~~g~  323 (385)
T 1pea_A          281 TITAWAEAAYWQTLLLGRAAQAA---GN--WRVEDVQRHLYDIDIDAP  323 (385)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---TS--CCHHHHHHHHTTCCEEET
T ss_pred             CCChHHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHhhCcccCC
Confidence            36789999999999999999987   32  479999999998889987

>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}

Probab=92.32  E-value=0.079  Score=45.22  Aligned_cols=43  Identities=14%  Similarity=0.132  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHc---CC-------CCCChHHHH-HHhhcCcccc
Q psy8885          33 FVTAFYDAVILYSIALNETIAM---GG-------SQSDGSAIT-RRMWNRTYQD   75 (148)
Q Consensus        33 yaa~LyDAV~LYA~ALnetL~~---g~-------~~~nGt~I~-~~m~nrtF~G   75 (148)
                      .+...|||||..|+||++++..   +.       ...++.++. +.|++.+|.+
T Consensus       364 ~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~~Lk~v~F~~  417 (479)
T 3sm9_A          364 KIMFVVNAVYAMAHALHKMQRTLCPNTTKLCDAMKILDGKKLYKDYLLKINFTA  417 (479)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHSTTCSSCCHHHHSCCHHHHHHHTGGGCCEEC
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCCCcChHHHHHHHhcceeecc
Confidence            3468999999999999999861   11       124677899 8899999965

>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}

Probab=91.38  E-value=0.3  Score=38.74  Aligned_cols=44  Identities=11%  Similarity=0.126  Sum_probs=38.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcC-cccc-c
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNR-TYQD-P   76 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nr-tF~G-v   76 (148)
                      .++.+++.-|||+++++.||+++   | ...++..|.+.|.+. .|.| .
T Consensus       281 ~p~~~a~~~yda~~~~~~al~~a---g-~~~~~~~v~~aL~~~~~~~~~~  326 (364)
T 3lop_A          281 DLSFRAVEGFVAAKVLAEAIRRA---G-PKPTREQVRHALTELRDYDVGG  326 (364)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---C-SSCCHHHHHHHHHTCEEEESST
T ss_pred             CCChHHHHHHHHHHHHHHHHHHh---C-CCCCHHHHHHHHHhcCCccCCC
Confidence            46789999999999999999987   3 345899999999998 6999 6

>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*

Probab=90.03  E-value=0.3  Score=41.78  Aligned_cols=42  Identities=12%  Similarity=0.079  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCC----------CCCChHHHHHHhhcCccccc
Q psy8885          35 TAFYDAVILYSIALNETIAMGG----------SQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        35 a~LyDAV~LYA~ALnetL~~g~----------~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      ...|||||..|+||++++....          ...++.++.+.|++.+|.+.
T Consensus       384 ~~vy~AVyavAhALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~f~~~  435 (496)
T 3ks9_A          384 GFVINAIYAMAHGLQNMHHALCPGHVGLCDAMKPIDGSKLLDFLIKSSFIGV  435 (496)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCSSCCGGGSSCCHHHHHHHHHTCEEECT
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCCCCCHHHHHHHHHhcCCcCC
Confidence            3699999999999999986321          12467899999999999864

>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}

Probab=88.85  E-value=0.55  Score=37.58  Aligned_cols=43  Identities=9%  Similarity=-0.038  Sum_probs=36.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCc----cc
Q psy8885          31 STFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT----YQ   74 (148)
Q Consensus        31 ~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrt----F~   74 (148)
                      +.+++.-|||+++++.||+++-..++ ..++..|.+.|.+.+    |.
T Consensus       284 ~~~~~~~yda~~~~~~al~~ag~~~~-~~~~~~v~~aL~~~~~~~~~~  330 (392)
T 3lkb_A          284 SVNYTNGMLAAAIAVEAIRRAQERFK-RITNETVYQAIVGMNGPNAFK  330 (392)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHTCCGGGCBC
T ss_pred             chhHHHHHHHHHHHHHHHHHhhccCC-CCCHHHHHHHHHhcCCCcCcc
Confidence            45589999999999999999876554 468999999999887    98

>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}

Probab=87.83  E-value=0.4  Score=30.60  Aligned_cols=22  Identities=45%  Similarity=0.581  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhh
Q psy8885         122 TLRLEKKLRRLFRQKEESTRRL  143 (148)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~  143 (148)
                      -||||||+.+|-+|||.+..-|
T Consensus         8 ILRLErEIE~Lqrqke~~~~~L   29 (51)
T 2lw9_A            8 ILRLEKEIEDLQRMKEQQELSL   29 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999876544

>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}

Probab=87.60  E-value=0.59  Score=36.81  Aligned_cols=46  Identities=22%  Similarity=0.260  Sum_probs=35.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcC-ccccc---ccccC
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNR-TYQDP---KSILP   81 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nr-tF~Gv---ysLD~   81 (148)
                      .++.|+++-|||++++|.||+++       .|...|.+.|... .|.|+   +++|+
T Consensus       278 ~p~~~a~~~Yda~~~la~Ai~~a-------~~~~~v~~aL~~~~~~~g~~G~i~f~~  327 (353)
T 4gnr_A          278 EPSTFAALAYDSVHLVANAAKGA-------KNSGEIKDNLAXTKDFEGVTGQTSFDA  327 (353)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTC-------SSHHHHHHHHHTCCCEEETTEEECCCT
T ss_pred             CCChhHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHhcCCCccCceeEEECC
Confidence            45789999999999999998632       2677888888655 59988   44554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	148
d1dp4a_	425	c.93.1.1 (A:) Hormone binding domain of the atrial	2e-08
d1jdpa_	401	c.93.1.1 (A:) Hormone binding domain of the atrial	6e-07

>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 425

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.4 bits (116), Expect = 2e-08
 Identities = 25/62 (40%), Positives = 42/62 (67%)

Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
           +K +A + +NFT  +   +    +F+D ++LY  A+ ET+A GG+ +DG  IT+RMWNR+
Sbjct: 297 LKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRS 356

Query: 73  YQ 74
           +Q
Sbjct: 357 FQ 358

>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 6e-07
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 17  AKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQ 74
           +          + V+ FV  F+DA++LY +AL+E +  G S+ DG  I ++ WNRT++
Sbjct: 296 SSVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFE 353

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	148
d1dp4a_	425	Hormone binding domain of the atrial natriuretic p	99.79
d1jdpa_	401	Hormone binding domain of the atrial natriuretic p	99.14
d1ewka_	477	Metabotropic glutamate receptor subtype 1 {Rat (Ra	98.37
d1usga_	346	Leucine-binding protein {Escherichia coli [TaxId:	93.25
d1qo0a_	373	Amide receptor/negative regulator of the amidase o	92.91

>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=1.1e-19  Score=145.15  Aligned_cols=102  Identities=33%  Similarity=0.471  Sum_probs=90.6

Q ss_pred             chhHHHHHHHHhcCCCCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---------
Q psy8885           6 NGYVRLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---------   76 (148)
Q Consensus         6 ~~~F~~eVk~~a~~pFn~t~~~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---------   76 (148)
                      ...|.+++++....+|+++..+..++.|+++.||||++||+||+++++.+++..||.+|.+.|++++|+|+         
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~n  369 (425)
T d1dp4a_         290 YLEFLKQLKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRN  369 (425)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHTTTTEEEEETTEEEEECTT
T ss_pred             HHHHHHHHHHHhhccCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhCCeEecCCeeEEECCC
Confidence            35678888777788899888888999999999999999999999999999999999999999999999998         


Q ss_pred             ------cc---ccCCCCCcEEEEEeeec----------------CCCCCCCCCcee
Q psy8885          77 ------KS---ILPTTTPLRLVHKYILY----------------YVIPLCNHKCTI  107 (148)
Q Consensus        77 ------ys---LD~~~g~f~vV~~Y~g~----------------g~~PLd~P~CGF  107 (148)
                            |.   +|+++++|++|+.|+..                |.||+|+|.|||
T Consensus       370 Gdr~~~y~i~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~i~W~~~~~P~d~p~cgf  425 (425)
T d1dp4a_         370 GDRDTDFSLWDMDPETGAFRVVLNYNGTSQELMAVSEHKLYWPLGYPPPDVPKCGF  425 (425)
T ss_dssp             SBBCCCEEEEEECTTTCCEEEEEEECTTTCCEEESTTCCCCCTTSSCCCSSCTTCC
T ss_pred             CCcccceEEEEEECCCCeEEEEEEEECCCCeEEecCCceeECCCCCCCCCCCCCCC
Confidence                  44   36678899999999832                679999999998

>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.8e-11  Score=92.64  Aligned_cols=87  Identities=31%  Similarity=0.507  Sum_probs=73.5

Q ss_pred             chhHHHHH-HHHhcCCCCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc--------
Q psy8885           6 NGYVRLMV-KKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP--------   76 (148)
Q Consensus         6 ~~~F~~eV-k~~a~~pFn~t~~~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv--------   76 (148)
                      ...|.+++ +.....|.++   ...++.|+++.||||+++|+||+++++.+++..||..|.+.|.+.+|.|+        
T Consensus       287 ~~~f~~~~~~~~~~~~~~~---~~~~~~~a~~~yDav~l~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~  363 (401)
T d1jdpa_         287 FEKFSMEVKSSVEKQGLNM---EDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDA  363 (401)
T ss_dssp             HHHHHHHHHHHHHTTTCCC---CSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECT
T ss_pred             HHHHHHHHHHHHhhcCCCc---cccccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhCCeEEcCceEEEECC
Confidence            45677888 6667777754   35688999999999999999999999999999999999999999999998        


Q ss_pred             -------cc---c-cCCCCCcEEEEEeeec
Q psy8885          77 -------KS---I-LPTTTPLRLVHKYILY   95 (148)
Q Consensus        77 -------ys---L-D~~~g~f~vV~~Y~g~   95 (148)
                             |.   + +.++|+|++|+.|++.
T Consensus       364 ~Gdr~~~~~~~~~~~~~~g~~~~Vg~~~~~  393 (401)
T d1jdpa_         364 NGDRYGDFSVIAMTDVEAGTQEVIGDYFGK  393 (401)
T ss_dssp             TSBBCCEEEEEEEEETTTTEEEEEEEEETT
T ss_pred             CCCccCcEEEEEEEECCCCEEEEEEEEECC
Confidence                   33   2 4577899999999974

>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=2.2e-07  Score=76.86  Aligned_cols=47  Identities=9%  Similarity=0.038  Sum_probs=40.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcC----------CCCCChHHHHHHhhcCccccc
Q psy8885          30 VSTFVTAFYDAVILYSIALNETIAMG----------GSQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        30 v~~yaa~LyDAV~LYA~ALnetL~~g----------~~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      .+.++++.||||++||+||+++++..          ....+|.++++.|++.+|.|+
T Consensus       371 ~~~~~~~~yDAV~a~A~AL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~v~F~G~  427 (477)
T d1ewka_         371 QDSKMGFVINAIYAMAHGLQNMHHALCPGHVGLCDAMKPIDGRKLLDFLIKSSFVGV  427 (477)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSCCGGGSSCCHHHHHHHHHTCEEECT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccCCCcCCHHHHHHHHhcCeeECC
Confidence            46789999999999999999998742          124589999999999999997

>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Leucine-binding protein
species: Escherichia coli [TaxId: 562]

Probab=93.25  E-value=0.037  Score=41.37  Aligned_cols=49  Identities=18%  Similarity=0.162  Sum_probs=40.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---ccccCC
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---KSILPT   82 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---ysLD~~   82 (148)
                      ..+.|+++-|||++++|.||+++   |.  .++..|++.|.+..|+|+   +++|.+
T Consensus       272 ~~~~~a~~~Yda~~~la~Al~~a---gs--~d~~~l~~al~~~~~~g~~G~v~fd~~  323 (346)
T d1usga_         272 PSGPYVWITYAAVQSLATALERT---GS--DEPLALVKDLKANGANTVIGPLNWDEK  323 (346)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---CC--CCHHHHHHHHHHHCEEETTEEECBCTT
T ss_pred             CCCchHHHHHHHHHHHHHHHHHH---CC--CCHHHHHHHHHhCCCccceEEEEECCC
Confidence            45789999999999999999976   32  478899999999999998   556643

>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Amide receptor/negative regulator of the amidase operon (AmiC)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.91  E-value=0.25  Score=37.81  Aligned_cols=43  Identities=16%  Similarity=0.336  Sum_probs=36.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc
Q psy8885          29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP   76 (148)
Q Consensus        29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv   76 (148)
                      .++.++++-||++.+.|.|++++   | + .|...|.+.|.+.+|.|.
T Consensus       275 ~~~~~~~~aY~a~~~~a~Ai~~a---g-~-~d~~~i~~aL~~~~~~~~  317 (373)
T d1qo0a_         275 TITAWAEAAYWQTLLLGRAAQAA---G-N-WRVEDVQRHLYDIDIDAP  317 (373)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH---T-S-CCHHHHHHHHSSCCEEET
T ss_pred             CCChHHHHHHHHHHHHHHHHHHh---C-C-CCHHHHHHHHhcCceeCC
Confidence            35778999999999999999975   3 3 589999999999999977