Psyllid ID: psy8958

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLFPMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFSTKVRQGNQGSSGRL
Secondary Structure (PSIPRED)
cccccEEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccEEEEEccccEEcccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHcccccccEEEEEEccccccccccccccHHcccccEEccccccccccccEEEEEEccHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccEEEEEEEccccEEcccccccHHHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHcccccccEEEEEEEccccEEcccccccccHHHHHHHHHHHHcccccccEEEEEEcccHHccccHHHHHHHHcccccEEEEEEEcHHHHHcccccHHHHHHHHHcccccHHHccEEEEEEcccccccccHHHHHHHHHHHHHccHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mtrspvkvtlsegpyhvaqfkdssrefdltkeSDLVELRKEVERRMMNSVRKGKTVSNEVISmsvkgpglqrmvlvdlpgiiststqdmASDTRDLIRQMTQthmsnpnaIILCIQdgsvdaersnvtdlvsqmdpqgkrTIFVLTKVSQQLIRIEkdgsvdaersnvtdlgsvmdlqgKHTIFVLTKVSqqvsmspplspsgqkhrLIKSFIVCLQVDlaeenhsdpQRIKKILAGKLFPMKALGYFAVVtgrggkkdesIQDIKEYEENFFKKSKLFSTKVrqgnqgssgrl
Flexible Loop (DISEMBL)
mtrspvkvtlsegpyhvaqfkdssrefdltkesdlvelrkeverrmmnsvrkgktvsnevismsvkgpglqrMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDlvsqmdpqgkrtIFVLTKVSQQLIriekdgsvdaersnVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLaeenhsdpqRIKKIlagklfpmKALGYFAVVtgrggkkdeSIQDIKEYEEnffkksklfstkvrqgnqgssgrl
Low Complexity Region (SEG)
MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLFPMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFSTKVRQGNQGSSGRL
Disordered region (IsUnstruct)
******************************************************************GPGLQRMVLVDLPGIIS************************PNAIILCIQDGSV******************KRTIFVLTKVSQQLIRIEK**********VTDLGSVMDLQGKHTIFVLTKV*****************RLIKSFIVCLQVDLAEENH**PQRIKKILAGKLFPMKALGYFAVVTGRG***************************************
Disordered Region (DISOPRED)
MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVR**KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMDLQGKHTIFVLTKVSQ**************HRLIKSFIVCLQVDLAE**HSDPQRIKKILAGKLFPMKALGYFAVVTGR*G**DESIQDIKEYEENFFKKSKLFSTKVRQGNQ******
Disordered Region (DISEMBL)
*********LSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMDLQGKHTIFVLTKVS***************HRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLFPMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFST*************
Disordered Region (DISPRO)
**RSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLFPMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFSTKVRQGNQ******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLFPMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFSTKVRQGNQGSSGRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q5F499	977	Dynamin-like 120 kDa prot	yes	N/A	0.744	0.224	0.5	1e-65
Q5U3A7	966	Dynamin-like 120 kDa prot	yes	N/A	0.744	0.226	0.486	3e-63
Q2TA68	960	Dynamin-like 120 kDa prot	yes	N/A	0.744	0.228	0.479	2e-62
O60313	960	Dynamin-like 120 kDa prot	yes	N/A	0.744	0.228	0.479	2e-62
Q5RAM3	960	Dynamin-like 120 kDa prot	yes	N/A	0.744	0.228	0.479	2e-62
P58281	960	Dynamin-like 120 kDa prot	yes	N/A	0.744	0.228	0.479	3e-62
O93248	971	Dynamin-like 120 kDa prot	N/A	N/A	0.755	0.228	0.472	4e-62
Q94464	853	Dynamin-A OS=Dictyosteliu	yes	N/A	0.496	0.171	0.311	2e-13
Q7SXN5	691	Dynamin-1-like protein OS	no	N/A	0.394	0.167	0.327	1e-12
Q9U1M9	920	Dynamin-B OS=Dictyosteliu	no	N/A	0.326	0.104	0.395	2e-12

>sp|Q5F499|OPA1_CHICK Dynamin-like 120 kDa protein, mitochondrial OS=Gallus gallus GN=OPA1 PE=2 SV=1

 Score =  249 bits (637), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 149/298 (50%), Positives = 173/298 (58%), Gaps = 79/298 (26%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           MTRSPVKVTLSEGP+HVA FKDSSREFDLTKE DL  LR E+E RM NSV++G TVS E 
Sbjct: 339 MTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRNEIEIRMRNSVKEGCTVSTET 398

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           IS+SV+GPGLQRMVLVDLPG+IST T  MA                              
Sbjct: 399 ISLSVRGPGLQRMVLVDLPGVISTVTSGMA------------------------------ 428

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ----LIRIEKDGSVDAERSNVTDLGSVMD 176
                          P  K TIF ++K   Q    +I   +DGSVDAERS VTDL S MD
Sbjct: 429 ---------------PDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMD 473

Query: 177 LQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILA 236
            QGK TIFVLTKV                             DLAE+N + P RI++I+ 
Sbjct: 474 PQGKRTIFVLTKV-----------------------------DLAEKNVASPSRIQQIIE 504

Query: 237 GKLFPMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFSTKVRQGNQGSSGRL 294
           GKLFPMKALGYFAVVTG+G    ESI+ IKEYEE FF+ SKL  T + + +Q ++  L
Sbjct: 505 GKLFPMKALGYFAVVTGKGN-SSESIESIKEYEEEFFQNSKLLKTSMLKAHQVTTKNL 561

Dynamin-like 120 kDa protein, form S1: Inactive form produced by cleavage at S1 position by OMA1 following stress conditions that induce loss of mitochondrial membrane potential, leading to negative regulation of mitochondrial fusion.
Gallus gallus (taxid: 9031)

>sp|Q5U3A7|OPA1_DANRE Dynamin-like 120 kDa protein, mitochondrial OS=Danio rerio GN=opa1 PE=2 SV=1

 Score =  242 bits (617), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 145/298 (48%), Positives = 174/298 (58%), Gaps = 79/298 (26%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           MTRSPVKVTLSEGP+HVA FKDSSREFDL KE DL  LR E+E RM  SV++G+TVS E 
Sbjct: 328 MTRSPVKVTLSEGPHHVAMFKDSSREFDLGKEEDLAALRHEIELRMRKSVKEGQTVSPET 387

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           IS+SVKGPG+QRMVLVDLPG+IST T  MA+DT                           
Sbjct: 388 ISLSVKGPGIQRMVLVDLPGVISTVTTGMAADT--------------------------- 420

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ----LIRIEKDGSVDAERSNVTDLGSVMD 176
                             K TIF ++K   Q    +I   +DGSVDAERS VTDL S MD
Sbjct: 421 ------------------KETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMD 462

Query: 177 LQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILA 236
            QGK TIFVLTKV                             DLAE+N + P RI++I+ 
Sbjct: 463 PQGKRTIFVLTKV-----------------------------DLAEKNLASPSRIQQIVE 493

Query: 237 GKLFPMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFSTKVRQGNQGSSGRL 294
           GKLFPMKALGYFAVVTG+G   +ESI  IK+YEE+FF+ S+L    + + +Q ++  L
Sbjct: 494 GKLFPMKALGYFAVVTGKGS-PNESIDSIKDYEEDFFQNSRLLKDGMLKAHQVTTKNL 550

Dynamin-like 120 kDa protein, form S1: Inactive form produced by cleavage at S1 position by oma1 following stress conditions that induce loss of mitochondrial membrane potential, leading to negative regulation of mitochondrial fusion.

Danio rerio (taxid: 7955)

>sp|Q2TA68|OPA1_RAT Dynamin-like 120 kDa protein, mitochondrial OS=Rattus norvegicus GN=Opa1 PE=1 SV=1

 Score =  239 bits (610), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 143/298 (47%), Positives = 171/298 (57%), Gaps = 79/298 (26%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           MTRSPVKVTLSEGP+HVA FKDSSREFDLTKE DL  LR E+E RM  +V++G TVS E 
Sbjct: 322 MTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPET 381

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           IS++VKGPGLQRMVLVDLPG+I+T T  MA                              
Sbjct: 382 ISLNVKGPGLQRMVLVDLPGVINTVTSGMA------------------------------ 411

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ----LIRIEKDGSVDAERSNVTDLGSVMD 176
                          P  K TIF ++K   Q    +I   +DGSVDAERS VTDL S MD
Sbjct: 412 ---------------PDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMD 456

Query: 177 LQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILA 236
             G+ TIFVLTKV                             DLAE+N + P RI++I+ 
Sbjct: 457 PHGRRTIFVLTKV-----------------------------DLAEKNVASPSRIQQIIE 487

Query: 237 GKLFPMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFSTKVRQGNQGSSGRL 294
           GKLFPMKALGYFAVVTG+G    ESI+ I+EYEE FF+ SKL  T + + +Q ++  L
Sbjct: 488 GKLFPMKALGYFAVVTGKGN-SSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNL 544

Dynamin-like 120 kDa protein, form S1: Inactive form produced by cleavage at S1 position by OMA1 following stress conditions that induce loss of mitochondrial membrane potential, leading to negative regulation of mitochondrial fusion.

Rattus norvegicus (taxid: 10116)

>sp|O60313|OPA1_HUMAN Dynamin-like 120 kDa protein, mitochondrial OS=Homo sapiens GN=OPA1 PE=1 SV=3

 Score =  239 bits (609), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 143/298 (47%), Positives = 171/298 (57%), Gaps = 79/298 (26%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           MTRSPVKVTLSEGP+HVA FKDSSREFDLTKE DL  LR E+E RM  +V++G TVS E 
Sbjct: 322 MTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPET 381

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           IS++VKGPGLQRMVLVDLPG+I+T T  MA                              
Sbjct: 382 ISLNVKGPGLQRMVLVDLPGVINTVTSGMA------------------------------ 411

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ----LIRIEKDGSVDAERSNVTDLGSVMD 176
                          P  K TIF ++K   Q    +I   +DGSVDAERS VTDL S MD
Sbjct: 412 ---------------PDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMD 456

Query: 177 LQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILA 236
             G+ TIFVLTKV                             DLAE+N + P RI++I+ 
Sbjct: 457 PHGRRTIFVLTKV-----------------------------DLAEKNVASPSRIQQIIE 487

Query: 237 GKLFPMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFSTKVRQGNQGSSGRL 294
           GKLFPMKALGYFAVVTG+G    ESI+ I+EYEE FF+ SKL  T + + +Q ++  L
Sbjct: 488 GKLFPMKALGYFAVVTGKGN-SSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNL 544

Dynamin-like 120 kDa protein, form S1: Inactive form produced by cleavage at S1 position by OMA1 following stress conditions that induce loss of mitochondrial membrane potential, leading to negative regulation of mitochondrial fusion.

Homo sapiens (taxid: 9606)

>sp|Q5RAM3|OPA1_PONAB Dynamin-like 120 kDa protein, mitochondrial OS=Pongo abelii GN=OPA1 PE=2 SV=1

 Score =  239 bits (609), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 143/298 (47%), Positives = 171/298 (57%), Gaps = 79/298 (26%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           MTRSPVKVTLSEGP+HVA FKDSSREFDLTKE DL  LR E+E RM  +V++G TVS E 
Sbjct: 322 MTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPET 381

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           IS++VKGPGLQRMVLVDLPG+I+T T  MA                              
Sbjct: 382 ISLNVKGPGLQRMVLVDLPGVINTVTSGMA------------------------------ 411

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ----LIRIEKDGSVDAERSNVTDLGSVMD 176
                          P  K TIF ++K   Q    +I   +DGSVDAERS VTDL S MD
Sbjct: 412 ---------------PDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMD 456

Query: 177 LQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILA 236
             G+ TIFVLTKV                             DLAE+N + P RI++I+ 
Sbjct: 457 PHGRRTIFVLTKV-----------------------------DLAEKNVASPSRIQQIIE 487

Query: 237 GKLFPMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFSTKVRQGNQGSSGRL 294
           GKLFPMKALGYFAVVTG+G    ESI+ I+EYEE FF+ SKL  T + + +Q ++  L
Sbjct: 488 GKLFPMKALGYFAVVTGKGN-SSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNL 544

Dynamin-like 120 kDa protein, form S1: Inactive form produced by cleavage at S1 position by OMA1 following stress conditions that induce loss of mitochondrial membrane potential, leading to negative regulation of mitochondrial fusion.

Pongo abelii (taxid: 9601)

>sp|P58281|OPA1_MOUSE Dynamin-like 120 kDa protein, mitochondrial OS=Mus musculus GN=Opa1 PE=1 SV=1

 Score =  239 bits (609), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 143/298 (47%), Positives = 171/298 (57%), Gaps = 79/298 (26%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           MTRSPVKVTLSEGP+HVA FKDSSREFDLTKE DL  LR E+E RM  +V++G TVS E 
Sbjct: 322 MTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPET 381

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           IS++VKGPGLQRMVLVDLPG+I+T T  MA                              
Sbjct: 382 ISLNVKGPGLQRMVLVDLPGVINTVTSGMA------------------------------ 411

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ----LIRIEKDGSVDAERSNVTDLGSVMD 176
                          P  K TIF ++K   Q    +I   +DGSVDAERS VTDL S MD
Sbjct: 412 ---------------PDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMD 456

Query: 177 LQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILA 236
             G+ TIFVLTKV                             DLAE+N + P RI++I+ 
Sbjct: 457 PHGRRTIFVLTKV-----------------------------DLAEKNVASPSRIQQIIE 487

Query: 237 GKLFPMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFSTKVRQGNQGSSGRL 294
           GKLFPMKALGYFAVVTG+G    ESI+ I+EYEE FF+ SKL  T + + +Q ++  L
Sbjct: 488 GKLFPMKALGYFAVVTGKGN-SSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNL 544

Dynamin-like 120 kDa protein, form S1: Inactive form produced by cleavage at S1 position by OMA1 following stress conditions that induce loss of mitochondrial membrane potential, leading to negative regulation of mitochondrial fusion.

Mus musculus (taxid: 10090)

>sp|O93248|OPA1_ONCMA Dynamin-like 120 kDa protein, mitochondrial OS=Oncorhynchus masou GN=opa1 PE=2 SV=1

 Score =  238 bits (607), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 139/294 (47%), Positives = 173/294 (58%), Gaps = 72/294 (24%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           MTRSPVKVTLSEGP+HVA FKDSSREFDL KE DL  LR E+E RM  SV++G+TVS E 
Sbjct: 334 MTRSPVKVTLSEGPHHVAMFKDSSREFDLGKEEDLAALRHEIELRMRKSVKEGQTVSPET 393

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           IS+SVKGPG+QRMVLVDLPG+IST T  MA+DT++ I  +++ +M NPNAIILCI     
Sbjct: 394 ISLSVKGPGIQRMVLVDLPGVISTVTAGMAADTKETIFSISKNYMQNPNAIILCI----- 448

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMDLQGK 180
                                               +DGSVDAE ++    G      G+
Sbjct: 449 ------------------------------------QDGSVDAE-ADRHRPGQSNGPAGE 471

Query: 181 HTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF 240
            TIFVLTKV                             DLAE+N + P RI++I+ GKLF
Sbjct: 472 RTIFVLTKV-----------------------------DLAEKNLASPNRIQQIVEGKLF 502

Query: 241 PMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFSTKVRQGNQGSSGRL 294
           PMKALGYFAVVTG+G    ESI  IK+YEE+FF+ S+L    + + +Q ++  L
Sbjct: 503 PMKALGYFAVVTGKGS-AGESIDSIKDYEEDFFQNSRLLRDGMLKAHQVTTKNL 555

Dynamin-like 120 kDa protein, form S1: Inactive form produced by cleavage at S1 position by oma1 following stress conditions that induce loss of mitochondrial membrane potential, leading to negative regulation of mitochondrial fusion.

Oncorhynchus masou (taxid: 8020)

>sp|Q94464|DYNA_DICDI Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1 SV=2

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFD--LTKESDLV----ELRKEVERRMMNSVRKGK 54
           +TR P+ + L+  P  +A     ++E+   L K +D+     E+R+E+ R       K K
Sbjct: 58  VTRRPLILQLTHLP--IADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNK 115

Query: 55  TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILC 114
            +S + I++ +  P +  + LVDLPGI      D  +D    IR+M   ++   NAII+ 
Sbjct: 116 GISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVA 175

Query: 115 IQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV 148
           +   + D   S+   L  ++DP+GKRTI V+TK+
Sbjct: 176 VTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 209

Function in membrane trafficking processes along the endo-lysosomal pathway.

Dictyostelium discoideum (taxid: 44689)

>sp|Q7SXN5|DNM1L_DANRE Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=2 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 62/116 (53%)

Query: 33  SDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASD 92
           +D  E+R+E+E          K +S+E I + +  P +  + LVDLPGI      D   D
Sbjct: 101 TDFDEIRQEIENETERVSGNNKGISDEPIHLKIFSPHVVNLTLVDLPGITKVPVGDQPKD 160

Query: 93  TRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV 148
               IR++   ++SNPN+IIL +   + D   S    +  ++DP G+RT+ V+TK+
Sbjct: 161 IELQIRELILKYISNPNSIILAVTAANTDMATSEALKVAREVDPDGRRTLAVVTKL 216

Enzyme hydrolyzing GTP that probably remodels membranes and may function in mitochondrial and peroxisomal division.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q9U1M9|DYNB_DICDI Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 56/96 (58%)

Query: 53  GKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAII 112
            K +S+E I + +  P +  + LVDLPG+   + +D   D  + I+ M   ++SNPN+II
Sbjct: 266 NKDISSEPIVLKIYSPKVVPLTLVDLPGLTRVAIEDQPPDIEEKIKSMIIDYISNPNSII 325

Query: 113 LCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV 148
           L I   + D   S+   L  Q+DP GKRTI VLTK+
Sbjct: 326 LAITPANQDIVTSDALKLAQQVDPLGKRTIGVLTKL 361

Enzyme hydrolyzing GTP.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
189237304	988	PREDICTED: similar to AGAP011286-PA [Tri	0.758	0.225	0.595	3e-85
270006550	969	hypothetical protein TcasGA2_TC010420 [T	0.758	0.230	0.595	3e-85
242020686	939	conserved hypothetical protein [Pediculu	0.710	0.222	0.610	1e-84
350411484	954	PREDICTED: dynamin-like 120 kDa protein,	0.707	0.218	0.609	1e-83
350411481	969	PREDICTED: dynamin-like 120 kDa protein,	0.707	0.214	0.609	1e-83
383853990	976	PREDICTED: dynamin-like 120 kDa protein,	0.707	0.213	0.605	5e-83
380020748	976	PREDICTED: dynamin-like 120 kDa protein,	0.707	0.213	0.598	6e-83
321476759	902	hypothetical protein DAPPUDRAFT_207426 [	0.710	0.231	0.603	6e-83
328787419	976	PREDICTED: optic atrophy 1-like isoform	0.707	0.213	0.598	7e-83
332016787	999	Dynamin-like 120 kDa protein, mitochondr	0.707	0.208	0.594	3e-82

>gi|189237304|ref|XP_971777.2| PREDICTED: similar to AGAP011286-PA [Tribolium castaneum]

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 175/294 (59%), Positives = 197/294 (67%), Gaps = 71/294 (24%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           MTR+PVKVTLSEGPYHVAQF+DS+REFDLTKESDL +LR+EVE RM NSV+ GKTVS+EV
Sbjct: 351 MTRAPVKVTLSEGPYHVAQFRDSTREFDLTKESDLADLRREVELRMRNSVKGGKTVSSEV 410

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           ISM+VKGPGLQRMVLVDLPGIIST T DMASDTR+ I+QMTQT+M+NPNAIILCIQD   
Sbjct: 411 ISMTVKGPGLQRMVLVDLPGIISTVTTDMASDTRECIKQMTQTYMNNPNAIILCIQD--- 467

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMDLQGK 180
                                                 G+VDAERSNVTDL S  D QGK
Sbjct: 468 --------------------------------------GAVDAERSNVTDLVSQCDPQGK 489

Query: 181 HTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF 240
            TIFVLTKV                             DLAEEN +DP RI+KIL+GKLF
Sbjct: 490 RTIFVLTKV-----------------------------DLAEENLADPNRIRKILSGKLF 520

Query: 241 PMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFSTKVRQGNQGSSGRL 294
           PMKALGYFAVVTGR G+KD+ IQ IK+YEENFFK SKLF   V +  Q ++  L
Sbjct: 521 PMKALGYFAVVTGR-GRKDDPIQTIKDYEENFFKNSKLFKDGVIRSTQVTTRNL 573

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006550|gb|EFA02998.1| hypothetical protein TcasGA2_TC010420 [Tribolium castaneum]

 Score =  320 bits (821), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 175/294 (59%), Positives = 197/294 (67%), Gaps = 71/294 (24%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           MTR+PVKVTLSEGPYHVAQF+DS+REFDLTKESDL +LR+EVE RM NSV+ GKTVS+EV
Sbjct: 332 MTRAPVKVTLSEGPYHVAQFRDSTREFDLTKESDLADLRREVELRMRNSVKGGKTVSSEV 391

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           ISM+VKGPGLQRMVLVDLPGIIST T DMASDTR+ I+QMTQT+M+NPNAIILCIQD   
Sbjct: 392 ISMTVKGPGLQRMVLVDLPGIISTVTTDMASDTRECIKQMTQTYMNNPNAIILCIQD--- 448

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMDLQGK 180
                                                 G+VDAERSNVTDL S  D QGK
Sbjct: 449 --------------------------------------GAVDAERSNVTDLVSQCDPQGK 470

Query: 181 HTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF 240
            TIFVLTKV                             DLAEEN +DP RI+KIL+GKLF
Sbjct: 471 RTIFVLTKV-----------------------------DLAEENLADPNRIRKILSGKLF 501

Query: 241 PMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFSTKVRQGNQGSSGRL 294
           PMKALGYFAVVTGR G+KD+ IQ IK+YEENFFK SKLF   V +  Q ++  L
Sbjct: 502 PMKALGYFAVVTGR-GRKDDPIQTIKDYEENFFKNSKLFKDGVIRSTQVTTRNL 554

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020686|ref|XP_002430783.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212515980|gb|EEB18045.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 171/280 (61%), Positives = 191/280 (68%), Gaps = 71/280 (25%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           MTRSPVKVTLSEGPYH+AQFKDS+REFDLTKESDL ELR+EVE RM +S+R GKTVS++V
Sbjct: 300 MTRSPVKVTLSEGPYHIAQFKDSAREFDLTKESDLSELRREVEMRMKSSIRDGKTVSHDV 359

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           ISMSVKGPGLQRMVLVDLPGIIST T+DMA DTR+ IRQMTQT+MSNPNAIILCIQD   
Sbjct: 360 ISMSVKGPGLQRMVLVDLPGIISTVTKDMAGDTREAIRQMTQTYMSNPNAIILCIQD--- 416

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMDLQGK 180
                                                 G+VDAERSNVTDL S +D QGK
Sbjct: 417 --------------------------------------GAVDAERSNVTDLVSQVDPQGK 438

Query: 181 HTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF 240
            TIFVLTKV                             D+AEEN +DP RI+KIL GKLF
Sbjct: 439 RTIFVLTKV-----------------------------DVAEENLADPNRIRKILTGKLF 469

Query: 241 PMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFS 280
           PMKALGYFAVVTGR G+ D+SIQ IK+YEE FF+ SKLF+
Sbjct: 470 PMKALGYFAVVTGR-GRSDDSIQAIKDYEEKFFRNSKLFN 508

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411484|ref|XP_003489366.1| PREDICTED: dynamin-like 120 kDa protein, mitochondrial-like isoform 2 [Bombus impatiens]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 170/279 (60%), Positives = 189/279 (67%), Gaps = 71/279 (25%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           MTR+PVKVTLSEGPYH+AQFKDSSREFDLTKES+L ELR+EVE RM NSV+ GKTVS +V
Sbjct: 316 MTRAPVKVTLSEGPYHIAQFKDSSREFDLTKESELAELRREVELRMKNSVKNGKTVSPDV 375

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           ISM+VKGPGLQRMVLVDLPGIIST T DMA DTRD IRQMTQ +MSNPNAIILCIQD   
Sbjct: 376 ISMTVKGPGLQRMVLVDLPGIISTVTIDMAEDTRDAIRQMTQQYMSNPNAIILCIQD--- 432

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMDLQGK 180
                                                 GSVDAERSNVTDL S MD  GK
Sbjct: 433 --------------------------------------GSVDAERSNVTDLVSQMDPSGK 454

Query: 181 HTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF 240
            TIFVLTKV                             DLAEEN ++P+R++KIL+GKLF
Sbjct: 455 RTIFVLTKV-----------------------------DLAEENLANPERVRKILSGKLF 485

Query: 241 PMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLF 279
           PMKALGYFAVVTGR G++D+SIQ IK+YEE FF+ SKLF
Sbjct: 486 PMKALGYFAVVTGR-GRQDDSIQTIKDYEEKFFRNSKLF 523

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411481|ref|XP_003489365.1| PREDICTED: dynamin-like 120 kDa protein, mitochondrial-like isoform 1 [Bombus impatiens]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 170/279 (60%), Positives = 189/279 (67%), Gaps = 71/279 (25%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           MTR+PVKVTLSEGPYH+AQFKDSSREFDLTKES+L ELR+EVE RM NSV+ GKTVS +V
Sbjct: 331 MTRAPVKVTLSEGPYHIAQFKDSSREFDLTKESELAELRREVELRMKNSVKNGKTVSPDV 390

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           ISM+VKGPGLQRMVLVDLPGIIST T DMA DTRD IRQMTQ +MSNPNAIILCIQD   
Sbjct: 391 ISMTVKGPGLQRMVLVDLPGIISTVTIDMAEDTRDAIRQMTQQYMSNPNAIILCIQD--- 447

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMDLQGK 180
                                                 GSVDAERSNVTDL S MD  GK
Sbjct: 448 --------------------------------------GSVDAERSNVTDLVSQMDPSGK 469

Query: 181 HTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF 240
            TIFVLTKV                             DLAEEN ++P+R++KIL+GKLF
Sbjct: 470 RTIFVLTKV-----------------------------DLAEENLANPERVRKILSGKLF 500

Query: 241 PMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLF 279
           PMKALGYFAVVTGR G++D+SIQ IK+YEE FF+ SKLF
Sbjct: 501 PMKALGYFAVVTGR-GRQDDSIQTIKDYEEKFFRNSKLF 538

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853990|ref|XP_003702505.1| PREDICTED: dynamin-like 120 kDa protein, mitochondrial-like [Megachile rotundata]

 Score =  313 bits (803), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 169/279 (60%), Positives = 188/279 (67%), Gaps = 71/279 (25%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           MTR+PVKVTLSEGPYH+AQFKDSSREFDLTKES+L ELR+EVE RM NSV+ GKTVS +V
Sbjct: 338 MTRAPVKVTLSEGPYHIAQFKDSSREFDLTKESELAELRREVELRMKNSVKNGKTVSQDV 397

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           ISM+VKGPGLQRMVLVDLPGIIST T DMA DTRD IRQMTQ +MSNPNAIILCIQD   
Sbjct: 398 ISMTVKGPGLQRMVLVDLPGIISTVTVDMAEDTRDAIRQMTQQYMSNPNAIILCIQD--- 454

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMDLQGK 180
                                                 GSVDAERSNVTDL + MD  GK
Sbjct: 455 --------------------------------------GSVDAERSNVTDLVAQMDPSGK 476

Query: 181 HTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF 240
            TIFVLTKV                             DLAEEN ++P R++KIL+GKLF
Sbjct: 477 RTIFVLTKV-----------------------------DLAEENLANPDRVRKILSGKLF 507

Query: 241 PMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLF 279
           PMKALGYFAVVTGR GK+++SIQ IK+YEE FF+ SKLF
Sbjct: 508 PMKALGYFAVVTGR-GKQEDSIQAIKDYEEQFFRNSKLF 545

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020748|ref|XP_003694241.1| PREDICTED: dynamin-like 120 kDa protein, mitochondrial-like [Apis florea]

 Score =  313 bits (802), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 167/279 (59%), Positives = 189/279 (67%), Gaps = 71/279 (25%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           MTR+PVKVTLSEGPYH+AQFKDSSREFDLTKES+L ELR+EVE RM NSV+ GKTVS +V
Sbjct: 338 MTRAPVKVTLSEGPYHIAQFKDSSREFDLTKESELAELRREVELRMKNSVKNGKTVSQDV 397

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           ISM+VKGPGLQRMVLVDLPGIIST T DMA DTR+ IRQMTQ +MSNPNAIILCIQD   
Sbjct: 398 ISMTVKGPGLQRMVLVDLPGIISTVTVDMAEDTREAIRQMTQQYMSNPNAIILCIQD--- 454

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMDLQGK 180
                                                 GSVDAERSNVTDL + MD  GK
Sbjct: 455 --------------------------------------GSVDAERSNVTDLVAQMDPSGK 476

Query: 181 HTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF 240
            TIFVLTKV                             DLAEEN ++P+R++KIL+GKLF
Sbjct: 477 RTIFVLTKV-----------------------------DLAEENLANPERVRKILSGKLF 507

Query: 241 PMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLF 279
           PMKALGYFAVVTGR G++D++IQ IK+YEE FF+ SKLF
Sbjct: 508 PMKALGYFAVVTGR-GRQDDTIQTIKDYEEKFFRNSKLF 545

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321476759|gb|EFX87719.1| hypothetical protein DAPPUDRAFT_207426 [Daphnia pulex]

 Score =  313 bits (802), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 169/280 (60%), Positives = 189/280 (67%), Gaps = 71/280 (25%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           MTR+PVKVTLSEGPYH+AQFKDSSREFDL+KESDL +LRKEVE RM+NSV+ GKTVS+EV
Sbjct: 261 MTRAPVKVTLSEGPYHIAQFKDSSREFDLSKESDLSDLRKEVELRMLNSVKHGKTVSSEV 320

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           ISM+VKGPGLQRMVLVDLPGIIST T +M S TR+ IRQMTQT+MSNPNAIILCIQD   
Sbjct: 321 ISMTVKGPGLQRMVLVDLPGIISTQTTEMESGTREAIRQMTQTYMSNPNAIILCIQD--- 377

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMDLQGK 180
                                                 G+VDAERSNVTDL + MD QGK
Sbjct: 378 --------------------------------------GAVDAERSNVTDLVAQMDPQGK 399

Query: 181 HTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF 240
            TIFVLTKV                             DLAEEN + P RI+KIL+GKLF
Sbjct: 400 RTIFVLTKV-----------------------------DLAEENLTKPDRIRKILSGKLF 430

Query: 241 PMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFS 280
           PM+ALGYFAVVTGRG  KD+SI  IK+YEENFF  SKLF+
Sbjct: 431 PMRALGYFAVVTGRGN-KDDSIATIKQYEENFFSTSKLFN 469

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787419|ref|XP_623413.2| PREDICTED: optic atrophy 1-like isoform 2 [Apis mellifera]

 Score =  313 bits (802), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 167/279 (59%), Positives = 189/279 (67%), Gaps = 71/279 (25%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           MTR+PVKVTLSEGPYH+AQFKDSSREFDLTKES+L ELR+EVE RM NSV+ GKTVS +V
Sbjct: 338 MTRAPVKVTLSEGPYHIAQFKDSSREFDLTKESELAELRREVELRMKNSVKNGKTVSQDV 397

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           ISM+VKGPGLQRMVLVDLPGIIST T DMA DTR+ IRQMTQ +MSNPNAIILCIQD   
Sbjct: 398 ISMTVKGPGLQRMVLVDLPGIISTVTVDMAEDTREAIRQMTQQYMSNPNAIILCIQD--- 454

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMDLQGK 180
                                                 GSVDAERSNVTDL + MD  GK
Sbjct: 455 --------------------------------------GSVDAERSNVTDLVAQMDPSGK 476

Query: 181 HTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF 240
            TIFVLTKV                             DLAEEN ++P+R++KIL+GKLF
Sbjct: 477 RTIFVLTKV-----------------------------DLAEENLANPERVRKILSGKLF 507

Query: 241 PMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLF 279
           PMKALGYFAVVTGR G++D++IQ IK+YEE FF+ SKLF
Sbjct: 508 PMKALGYFAVVTGR-GRQDDTIQTIKDYEEKFFRNSKLF 545

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332016787|gb|EGI57608.1| Dynamin-like 120 kDa protein, mitochondrial [Acromyrmex echinatior]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 166/279 (59%), Positives = 189/279 (67%), Gaps = 71/279 (25%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           MTR+PVKVTLSEGPYH+AQFKDSSREFDLTKES+L ELR+EVE RM NSV+ GKTVS +V
Sbjct: 361 MTRAPVKVTLSEGPYHIAQFKDSSREFDLTKESELAELRREVELRMKNSVKNGKTVSPDV 420

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           ISM+VKGPGLQRMVLVDLPGIIST T DMA DTR+ IRQM+Q +MSNPNAIILCIQD   
Sbjct: 421 ISMTVKGPGLQRMVLVDLPGIISTVTVDMAEDTREAIRQMSQQYMSNPNAIILCIQD--- 477

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMDLQGK 180
                                                 GSVDAERSNVTDL + MD  GK
Sbjct: 478 --------------------------------------GSVDAERSNVTDLVAQMDPSGK 499

Query: 181 HTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF 240
            TIFVLTKV                             D+AEEN ++P+R++KIL+GKLF
Sbjct: 500 RTIFVLTKV-----------------------------DMAEENLTNPERLRKILSGKLF 530

Query: 241 PMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLF 279
           PMKALGYFAVVTGR G++D+SIQ IK+YEE FF+ SKLF
Sbjct: 531 PMKALGYFAVVTGR-GRQDDSIQTIKDYEEKFFRNSKLF 568

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
FB|FBgn0261276	972	opa1-like "optic atrophy 1-lik	0.503	0.152	0.817	3.9e-80
UNIPROTKB|F1N8M4	977	OPA1 "Dynamin-like 120 kDa pro	0.503	0.151	0.783	1.6e-76
UNIPROTKB|Q5F499	977	OPA1 "Dynamin-like 120 kDa pro	0.503	0.151	0.777	3.4e-76
UNIPROTKB|F1SFG7	675	OPA1 "Uncharacterized protein"	0.503	0.219	0.743	1.4e-74
ZFIN|ZDB-GENE-041114-7	966	opa1 "optic atrophy 1 (human)"	0.503	0.153	0.763	8.8e-74
UNIPROTKB|O60313	960	OPA1 "Dynamin-like 120 kDa pro	0.503	0.154	0.743	2.7e-73
MGI|MGI:1921393	960	Opa1 "optic atrophy 1" [Mus mu	0.503	0.154	0.743	2.7e-73
RGD|708423	960	Opa1 "optic atrophy 1" [Rattus	0.503	0.154	0.743	2.7e-73
UNIPROTKB|Q2TA68	960	Opa1 "Dynamin-like 120 kDa pro	0.503	0.154	0.743	2.7e-73
UNIPROTKB|E5KLK1	961	OPA1 "Optic atrophy 1 (Autosom	0.503	0.154	0.743	2.7e-73

FB|FBgn0261276 opa1-like "optic atrophy 1-like" [Drosophila melanogaster (taxid:7227)]

 Score = 605 (218.0 bits), Expect = 3.9e-80, Sum P(2) = 3.9e-80
 Identities = 121/148 (81%), Positives = 134/148 (90%)

Query:     1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
             MTR+PVKVTL+EGPYHVAQF+DS RE+DLTKESDL +LR++VE RM  SVR GKTVSNEV
Sbjct:   333 MTRAPVKVTLAEGPYHVAQFRDSDREYDLTKESDLQDLRRDVEFRMKASVRGGKTVSNEV 392

Query:    61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
             I+M+VKGPGLQRMVLVDLPGIIST T DMASDT+D I QMT+ +MSNPNAIILCIQDGSV
Sbjct:   393 IAMTVKGPGLQRMVLVDLPGIISTMTVDMASDTKDSIHQMTKHYMSNPNAIILCIQDGSV 452

Query:   121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
             DAERSNVTDLV Q DP G+RTIFVLTKV
Sbjct:   453 DAERSNVTDLVMQCDPLGRRTIFVLTKV 480

GO:0005525 "GTP binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=IEA

GO:0035073 "pupariation" evidence=IMP

GO:0008053 "mitochondrial fusion" evidence=IMP

GO:0007005 "mitochondrion organization" evidence=IMP

UNIPROTKB|F1N8M4 OPA1 "Dynamin-like 120 kDa protein, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 576 (207.8 bits), Expect = 1.6e-76, Sum P(2) = 1.6e-76
 Identities = 116/148 (78%), Positives = 128/148 (86%)

Query:     1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
             MTRSPVKVTLSEGP+HVA FKDSSREFDLTKE DL  LR E+E RM NSV++G TVS E 
Sbjct:   339 MTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRNEIEIRMRNSVKEGCTVSTET 398

Query:    61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
             IS+SVKGPGLQRMVLVDLPG+IST T  MA DT++ I  +++ +M NPNAIILCIQDGSV
Sbjct:   399 ISLSVKGPGLQRMVLVDLPGVISTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV 458

Query:   121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
             DAERS VTDLVSQMDPQGKRTIFVLTKV
Sbjct:   459 DAERSIVTDLVSQMDPQGKRTIFVLTKV 486

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0007007 "inner mitochondrial membrane organization" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0008053 "mitochondrial fusion" evidence=IEA

GO:0030061 "mitochondrial crista" evidence=IEA

GO:0090398 "cellular senescence" evidence=IEA

UNIPROTKB|Q5F499 OPA1 "Dynamin-like 120 kDa protein, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 573 (206.8 bits), Expect = 3.4e-76, Sum P(2) = 3.4e-76
 Identities = 115/148 (77%), Positives = 128/148 (86%)

Query:     1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
             MTRSPVKVTLSEGP+HVA FKDSSREFDLTKE DL  LR E+E RM NSV++G TVS E 
Sbjct:   339 MTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRNEIEIRMRNSVKEGCTVSTET 398

Query:    61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
             IS+SV+GPGLQRMVLVDLPG+IST T  MA DT++ I  +++ +M NPNAIILCIQDGSV
Sbjct:   399 ISLSVRGPGLQRMVLVDLPGVISTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV 458

Query:   121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
             DAERS VTDLVSQMDPQGKRTIFVLTKV
Sbjct:   459 DAERSIVTDLVSQMDPQGKRTIFVLTKV 486

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

UNIPROTKB|F1SFG7 OPA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 551 (199.0 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
 Identities = 110/148 (74%), Positives = 126/148 (85%)

Query:     1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
             MTRSPVKVTLSEGP+HVA FKDSSREFDLTKE DL  LR E+E RM  +V++G TVS E 
Sbjct:    56 MTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPET 115

Query:    61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
             IS++VKGPGLQRMVLVDLPG+I+T T  MA DT++ I  +++ +M NPNAIILCIQDGSV
Sbjct:   116 ISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV 175

Query:   121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
             DAERS VTDLVSQMDP G+RTIFVLTKV
Sbjct:   176 DAERSIVTDLVSQMDPHGRRTIFVLTKV 203

GO:0090398 "cellular senescence" evidence=IEA

GO:0030061 "mitochondrial crista" evidence=IEA

GO:0008053 "mitochondrial fusion" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0007007 "inner mitochondrial membrane organization" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

ZFIN|ZDB-GENE-041114-7 opa1 "optic atrophy 1 (human)" [Danio rerio (taxid:7955)]

 Score = 566 (204.3 bits), Expect = 8.8e-74, Sum P(2) = 8.8e-74
 Identities = 113/148 (76%), Positives = 128/148 (86%)

Query:     1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
             MTRSPVKVTLSEGP+HVA FKDSSREFDL KE DL  LR E+E RM  SV++G+TVS E 
Sbjct:   328 MTRSPVKVTLSEGPHHVAMFKDSSREFDLGKEEDLAALRHEIELRMRKSVKEGQTVSPET 387

Query:    61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
             IS+SVKGPG+QRMVLVDLPG+IST T  MA+DT++ I  +++ +M NPNAIILCIQDGSV
Sbjct:   388 ISLSVKGPGIQRMVLVDLPGVISTVTTGMAADTKETIFSISKAYMQNPNAIILCIQDGSV 447

Query:   121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
             DAERS VTDLVSQMDPQGKRTIFVLTKV
Sbjct:   448 DAERSIVTDLVSQMDPQGKRTIFVLTKV 475

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

UNIPROTKB|O60313 OPA1 "Dynamin-like 120 kDa protein, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 551 (199.0 bits), Expect = 2.7e-73, Sum P(2) = 2.7e-73
 Identities = 110/148 (74%), Positives = 126/148 (85%)

Query:     1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
             MTRSPVKVTLSEGP+HVA FKDSSREFDLTKE DL  LR E+E RM  +V++G TVS E 
Sbjct:   322 MTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPET 381

Query:    61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
             IS++VKGPGLQRMVLVDLPG+I+T T  MA DT++ I  +++ +M NPNAIILCIQDGSV
Sbjct:   382 ISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV 441

Query:   121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
             DAERS VTDLVSQMDP G+RTIFVLTKV
Sbjct:   442 DAERSIVTDLVSQMDPHGRRTIFVLTKV 469

GO:0005525 "GTP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0030425 "dendrite" evidence=ISS

GO:0007601 "visual perception" evidence=IMP

GO:0003924 "GTPase activity" evidence=TAS

GO:0030061 "mitochondrial crista" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0000266 "mitochondrial fission" evidence=TAS

GO:0008053 "mitochondrial fusion" evidence=IMP;IDA;TAS

GO:0019896 "axon transport of mitochondrion" evidence=TAS

GO:0007007 "inner mitochondrial membrane organization" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=IMP;NAS

GO:0000287 "magnesium ion binding" evidence=NAS

GO:0005758 "mitochondrial intermembrane space" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IDA

GO:0090398 "cellular senescence" evidence=IDA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IMP

GO:0005743 "mitochondrial inner membrane" evidence=NAS

GO:0006184 "GTP catabolic process" evidence=TAS

MGI|MGI:1921393 Opa1 "optic atrophy 1" [Mus musculus (taxid:10090)]

 Score = 551 (199.0 bits), Expect = 2.7e-73, Sum P(2) = 2.7e-73
 Identities = 110/148 (74%), Positives = 126/148 (85%)

Query:     1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
             MTRSPVKVTLSEGP+HVA FKDSSREFDLTKE DL  LR E+E RM  +V++G TVS E 
Sbjct:   322 MTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPET 381

Query:    61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
             IS++VKGPGLQRMVLVDLPG+I+T T  MA DT++ I  +++ +M NPNAIILCIQDGSV
Sbjct:   382 ISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV 441

Query:   121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
             DAERS VTDLVSQMDP G+RTIFVLTKV
Sbjct:   442 DAERSIVTDLVSQMDPHGRRTIFVLTKV 469

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001843 "neural tube closure" evidence=IMP

GO:0003924 "GTPase activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IMP;IDA

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=ISO;IDA;NAS

GO:0007007 "inner mitochondrial membrane organization" evidence=ISO

GO:0007601 "visual perception" evidence=ISO

GO:0008053 "mitochondrial fusion" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030061 "mitochondrial crista" evidence=ISO

GO:0030425 "dendrite" evidence=IDA

GO:0050896 "response to stimulus" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO;IMP

GO:0090398 "cellular senescence" evidence=ISO

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IMP

RGD|708423 Opa1 "optic atrophy 1" [Rattus norvegicus (taxid:10116)]

 Score = 551 (199.0 bits), Expect = 2.7e-73, Sum P(2) = 2.7e-73
 Identities = 110/148 (74%), Positives = 126/148 (85%)

Query:     1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
             MTRSPVKVTLSEGP+HVA FKDSSREFDLTKE DL  LR E+E RM  +V++G TVS E 
Sbjct:   322 MTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPET 381

Query:    61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
             IS++VKGPGLQRMVLVDLPG+I+T T  MA DT++ I  +++ +M NPNAIILCIQDGSV
Sbjct:   382 ISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV 441

Query:   121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
             DAERS VTDLVSQMDP G+RTIFVLTKV
Sbjct:   442 DAERSIVTDLVSQMDPHGRRTIFVLTKV 469

GO:0001843 "neural tube closure" evidence=ISO

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005758 "mitochondrial intermembrane space" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0007007 "inner mitochondrial membrane organization" evidence=ISO

GO:0007601 "visual perception" evidence=ISO;IEP

GO:0008053 "mitochondrial fusion" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030061 "mitochondrial crista" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0050896 "response to stimulus" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO

GO:0090398 "cellular senescence" evidence=ISO

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=ISO

UNIPROTKB|Q2TA68 Opa1 "Dynamin-like 120 kDa protein, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 551 (199.0 bits), Expect = 2.7e-73, Sum P(2) = 2.7e-73
 Identities = 110/148 (74%), Positives = 126/148 (85%)

Query:     1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
             MTRSPVKVTLSEGP+HVA FKDSSREFDLTKE DL  LR E+E RM  +V++G TVS E 
Sbjct:   322 MTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPET 381

Query:    61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
             IS++VKGPGLQRMVLVDLPG+I+T T  MA DT++ I  +++ +M NPNAIILCIQDGSV
Sbjct:   382 ISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV 441

Query:   121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
             DAERS VTDLVSQMDP G+RTIFVLTKV
Sbjct:   442 DAERSIVTDLVSQMDPHGRRTIFVLTKV 469

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|E5KLK1 OPA1 "Optic atrophy 1 (Autosomal dominant), isoform CRA_f" [Homo sapiens (taxid:9606)]

 Score = 551 (199.0 bits), Expect = 2.7e-73, Sum P(2) = 2.7e-73
 Identities = 110/148 (74%), Positives = 126/148 (85%)

Query:     1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
             MTRSPVKVTLSEGP+HVA FKDSSREFDLTKE DL  LR E+E RM  +V++G TVS E 
Sbjct:   323 MTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPET 382

Query:    61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
             IS++VKGPGLQRMVLVDLPG+I+T T  MA DT++ I  +++ +M NPNAIILCIQDGSV
Sbjct:   383 ISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV 442

Query:   121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
             DAERS VTDLVSQMDP G+RTIFVLTKV
Sbjct:   443 DAERSIVTDLVSQMDPHGRRTIFVLTKV 470

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	294
cd08771	278	cd08771, DLP_1, Dynamin_like protein family includ	5e-48
pfam00350	168	pfam00350, Dynamin_N, Dynamin family	2e-31
smart00053	240	smart00053, DYNc, Dynamin, GTPase	8e-14
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-04

>gnl|CDD|206738 cd08771, DLP_1, Dynamin_like protein family includes dynamins and Mx proteins

 Score =  161 bits (409), Expect = 5e-48
 Identities = 74/287 (25%), Positives = 113/287 (39%), Gaps = 78/287 (27%)

Query: 1   MTRSPVKVTLSEGPYH-VAQFKDSSREFDLTKE---SDLVELRKEVERRMMNSVRKGKTV 56
            TR P+++ L   P       K+   EF   K    +D  ELR+E+E+       + K +
Sbjct: 36  CTRRPLELQLRRSPSESDEDEKEEWGEFLHLKSKEFTDFEELREEIEKETDRVAGENKGI 95

Query: 57  SNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQ 116
           S E I + ++ P +  + LVDLPG+I     D   D  + IR M ++++SNP +IIL + 
Sbjct: 96  SPEPIRLEIESPDVPNLTLVDLPGLIKVPVGDQPEDIEEQIRSMVKSYISNPRSIILAVV 155

Query: 117 DGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMD 176
             +VD   S    L  ++DP+G+RT                                   
Sbjct: 156 PANVDLANSEALKLAREVDPEGERT----------------------------------- 180

Query: 177 LQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILA 236
                 I VLTK+                             DL +   +D + I  +L 
Sbjct: 181 ------IGVLTKL-----------------------------DLMDPG-TDAEDILLLLQ 204

Query: 237 GKLFPMKALGYFAVVTGRGGKKDE--SIQDIKEYEENFFKKSKLFST 281
           GK+ P+K LGY  VV       D   SI++  E EE FF+    +  
Sbjct: 205 GKVIPLK-LGYVGVVNRSQKDIDSGKSIEEALEAEEEFFETHPWYKL 250

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes interferon-induced Mx proteins that inhibit a wide range of viruses by blocking an early stage of the replication cycle. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 278

>gnl|CDD|215874 pfam00350, Dynamin_N, Dynamin family

 Score =  114 bits (288), Expect = 2e-31
 Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 12/149 (8%)

Query: 1   MTRSPVKVTLSEGPY-HVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNE 59
            TR P+ + L E P       K   ++  L K  D  ELR+E+E         GK +S+E
Sbjct: 31  TTRRPLVLRLGEEPGAIPGAVKVEYKDG-LKKFEDFSELREEIEDETDKISGTGKGISSE 89

Query: 60  VISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGS 119
            I + +  P +  + LVD PG+ S +  D           +T+ ++  P  IIL + D +
Sbjct: 90  PIILEILSPLVPGLTLVDTPGLDSVAVGDQD---------LTEEYI-KPADIILAVVDAN 139

Query: 120 VDAERSNVTDLVSQMDPQGKRTIFVLTKV 148
            D   S    L  ++DP GKRTI VLTK 
Sbjct: 140 HDLSTSEALFLAREVDPNGKRTIGVLTKD 168

Length = 168

>gnl|CDD|197491 smart00053, DYNc, Dynamin, GTPase

 Score = 69.1 bits (169), Expect = 8e-14
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 4/147 (2%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           +TR P+ + L +     A+F          K +D  E+R E+E          K +S   
Sbjct: 59  VTRRPLILQLIKSKTEYAEF----LHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISGIP 114

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           I++ V  P +  + L+DLPGI   +  D   D    I++M +  +S    +IL +   + 
Sbjct: 115 INLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEYQIKKMIKQFISREECLILAVTPANT 174

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTK 147
           D   S+   L  ++DPQG RTI V+TK
Sbjct: 175 DLANSDALKLAKEVDPQGLRTIGVITK 201

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. Length = 240

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 9/100 (9%)

Query: 49  SVRKGKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNP 108
           S   G T   +V    +    ++ +VLVD PG+            R L+R          
Sbjct: 26  SDVPGTTRDPDVYVKELDKGKVK-LVLVDTPGLDEFGGLGREELARLLLRG--------A 76

Query: 109 NAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV 148
           + I+L +     ++E      ++ ++  +G   I V  K+
Sbjct: 77  DLILLVVDSTDRESEEDAKLLILRRLRKEGIPIILVGNKI 116

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
KOG0447|consensus	980		100.0
KOG0446|consensus	657		100.0
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	100.0
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.46
PF01031	295	Dynamin_M: Dynamin central region; InterPro: IPR00	99.03
COG0699	546	Predicted GTPases (dynamin-related) [General funct	97.53
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	97.11
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	97.07
COG0218	200	Predicted GTPase [General function prediction only	97.0
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	96.69
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	96.44
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	96.4
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	96.18
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.0
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	95.95
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	95.8
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	95.75
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	95.58
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	95.42
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	95.41
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	95.4
PRK00089	292	era GTPase Era; Reviewed	95.37
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	95.28
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	95.15
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	95.1
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	95.04
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	95.01
PRK00093	435	GTP-binding protein Der; Reviewed	94.95
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	94.95
PRK03003	472	GTP-binding protein Der; Reviewed	94.91
PRK04213	201	GTP-binding protein; Provisional	94.87
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	94.66
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	94.65
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	94.63
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	94.61
PRK00093	435	GTP-binding protein Der; Reviewed	94.48
PRK12298	390	obgE GTPase CgtA; Reviewed	94.47
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	94.26
PRK11058	426	GTPase HflX; Provisional	94.16
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	94.14
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	94.11
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	94.03
PRK12299	335	obgE GTPase CgtA; Reviewed	93.79
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	93.71
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	93.31
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	93.3
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	93.13
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	93.02
PLN03127	447	Elongation factor Tu; Provisional	92.91
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	92.88
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	92.84
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	92.79
cd00881	189	GTP_translation_factor GTP translation factor fami	92.61
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	92.52
PRK09866	741	hypothetical protein; Provisional	92.51
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	92.48
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	92.35
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	92.1
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	92.05
PRK03003	472	GTP-binding protein Der; Reviewed	91.81
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	91.76
COG1160	444	Predicted GTPases [General function prediction onl	91.75
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	91.7
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	91.68
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	91.65
PRK15494	339	era GTPase Era; Provisional	91.55
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	91.54
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	91.51
PRK12297	424	obgE GTPase CgtA; Reviewed	91.49
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	91.44
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	91.21
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	91.13
COG1159	298	Era GTPase [General function prediction only]	90.93
PF01031	295	Dynamin_M: Dynamin central region; InterPro: IPR00	90.74
PRK10416	318	signal recognition particle-docking protein FtsY;	90.73
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	90.49
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	90.47
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	90.43
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	90.34
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	90.17
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	90.04
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	89.88
TIGR00064	272	ftsY signal recognition particle-docking protein F	89.82
COG3596	296	Predicted GTPase [General function prediction only	89.7
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	89.57
PRK14974	336	cell division protein FtsY; Provisional	89.57
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	89.33
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	89.26
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	89.22
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	89.21
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	89.0
PRK12317	425	elongation factor 1-alpha; Reviewed	88.97
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	88.94
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	88.79
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	88.59
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	88.45
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	88.43
cd01881	176	Obg_like The Obg-like subfamily consists of five w	88.41
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	88.39
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	88.35
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	88.14
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	88.1
CHL00189	742	infB translation initiation factor 2; Provisional	88.09
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	88.08
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	87.95
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	87.94
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	87.76
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	87.71
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	87.6
PRK00771	437	signal recognition particle protein Srp54; Provisi	87.47
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	87.45
smart00178	184	SAR Sar1p-like members of the Ras-family of small	87.41
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	87.32
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	87.23
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	87.22
PRK13768	253	GTPase; Provisional	87.14
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	87.14
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	87.0
PRK12735	396	elongation factor Tu; Reviewed	86.91
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	86.85
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	86.79
COG1084	346	Predicted GTPase [General function prediction only	86.75
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	86.74
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	86.41
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	86.36
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	86.36
PRK05433	600	GTP-binding protein LepA; Provisional	86.25
PRK14845	1049	translation initiation factor IF-2; Provisional	86.16
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	86.09
PRK10867	433	signal recognition particle protein; Provisional	86.04
PRK00049	396	elongation factor Tu; Reviewed	85.98
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	85.88
PRK12739	691	elongation factor G; Reviewed	85.78
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	85.73
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	85.61
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	85.58
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	85.55
TIGR00959	428	ffh signal recognition particle protein. This mode	85.45
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	85.38
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	85.13
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	84.95
TIGR00485	394	EF-Tu translation elongation factor TU. This align	84.72
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	84.42
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	84.15
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	83.99
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	83.96
PRK12736	394	elongation factor Tu; Reviewed	83.74
CHL00071	409	tufA elongation factor Tu	83.72
PRK15467	158	ethanolamine utilization protein EutP; Provisional	83.55
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	83.48
PRK04004	586	translation initiation factor IF-2; Validated	83.47
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	83.28
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	83.27
PRK10218	607	GTP-binding protein; Provisional	83.24
PRK00007	693	elongation factor G; Reviewed	83.2
PRK05306	787	infB translation initiation factor IF-2; Validated	83.04
PRK12296	500	obgE GTPase CgtA; Reviewed	83.03
cd04105	203	SR_beta Signal recognition particle receptor, beta	83.0
PLN03118	211	Rab family protein; Provisional	82.95
PTZ00141	446	elongation factor 1- alpha; Provisional	82.94
cd03115	173	SRP The signal recognition particle (SRP) mediates	82.93
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	82.74
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	82.38
PLN03108	210	Rab family protein; Provisional	82.26
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	82.24
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	82.2
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	82.18
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	82.14
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	81.93
PRK13351	687	elongation factor G; Reviewed	81.78
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	81.69
PRK12740	668	elongation factor G; Reviewed	81.63
PRK04000	411	translation initiation factor IF-2 subunit gamma;	81.54
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	81.34
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	81.32
KOG2486|consensus	320		81.07
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	81.05
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	80.95
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	80.84
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	80.82

>KOG0447|consensus

Probab=100.00  E-value=1.2e-47  Score=379.90  Aligned_cols=223  Identities=69%  Similarity=1.017  Sum_probs=215.6

Q ss_pred             CCcCceEEEEEeCCCccccccccccccCCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCCceEEeCCC
Q psy8958           1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPG   80 (294)
Q Consensus         1 vTRrPl~L~L~~~p~~~~~f~~~~~ef~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~LTLVDLPG   80 (294)
                      +||.|+.++|..+|.|.+.|.+..++|++++++|+.+++.|++-+|..+...|+.+|+++|.+.+.||+++.|+||||||
T Consensus       342 MTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPG  421 (980)
T KOG0447|consen  342 MTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPG  421 (980)
T ss_pred             eccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhhhhhhhcccc
Q psy8958          81 IISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGS  160 (294)
Q Consensus        81 i~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~~~~~~~~~~  160 (294)
                      +|.+.+.|...+.++.|..|.+.||+|||+||||+.++++|.+.|.+..++..+||.|.|||.||||.            
T Consensus       422 vIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKV------------  489 (980)
T KOG0447|consen  422 VINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKV------------  489 (980)
T ss_pred             hhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeec------------
Confidence            99999999999999999999999999999999999999999999999999999999999999999995            


Q ss_pred             ccccccccccCCccccccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhhcCCChHHHHHHHcCCcc
Q psy8958         161 VDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF  240 (294)
Q Consensus       161 v~~~r~~~~~LG~~~d~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~~~~~~~~~~~il~~~~~  240 (294)
                                                                                |++++++.+|+++++||+|++|
T Consensus       490 ----------------------------------------------------------DlAEknlA~PdRI~kIleGKLF  511 (980)
T KOG0447|consen  490 ----------------------------------------------------------DLAEKNVASPSRIQQIIEGKLF  511 (980)
T ss_pred             ----------------------------------------------------------chhhhccCCHHHHHHHHhcCcc
Confidence                                                                      5677777889999999999999


Q ss_pred             cCCCCCeEEEEeCCCCCCCccHHHHHHHHHHHhccChhhhhhhhcCCCCCcCCC
Q psy8958         241 PMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFSTKVRQGNQGSSGRL  294 (294)
Q Consensus       241 ~L~~lG~~~v~~~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~~~~~~~~~  294 (294)
                      |+|+||||+||++||. ...||+.+|+|||+||+++++|.+.|.+.+|..|.||
T Consensus       512 PMKALGYfaVVTGrGn-ssdSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNl  564 (980)
T KOG0447|consen  512 PMKALGYFAVVTGKGN-SSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNL  564 (980)
T ss_pred             chhhcceeEEEecCCC-cchhHHHHHHHHHHHhhhhHHHHhhccchhhhcccch
Confidence            9999999999999977 7889999999999999999999999999999999986

>KOG0446|consensus

Probab=100.00  E-value=2.9e-45  Score=375.83  Aligned_cols=205  Identities=25%  Similarity=0.381  Sum_probs=189.8

Q ss_pred             CCcCceEEEEEeCCC---cccccc-ccccccCCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCCceEE
Q psy8958           1 MTRSPVKVTLSEGPY---HVAQFK-DSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLV   76 (294)
Q Consensus         1 vTRrPl~L~L~~~p~---~~~~f~-~~~~ef~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~LTLV   76 (294)
                      |||||++|||.+...   .|++|. |...    ..+.||.++++||+.+|++.+|.++++|+.||.|+|++|++++||||
T Consensus        62 vTRrPlvlqL~~~~~~~~e~~~f~~h~~~----~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLv  137 (657)
T KOG0446|consen   62 VTRRPLILQLSIVAGGDEEEASFLTHDKK----KRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLV  137 (657)
T ss_pred             eecccceeecccccCCcccchhccccccc----cccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhc
Confidence            899999999999753   789888 6543    46789999999999999999999999999999999999999999999


Q ss_pred             eCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhhhhhhh
Q psy8958          77 DLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIE  156 (294)
Q Consensus        77 DLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~~~~~~  156 (294)
                      ||||++++++++||+++..+|++|+++|+++|+||||+|+|||+|++|++++++|+++||.|.|||||+||+|       
T Consensus       138 DlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~D-------  210 (657)
T KOG0446|consen  138 DLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFD-------  210 (657)
T ss_pred             CCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHH-------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999965       


Q ss_pred             ccccccccccccccCCccccccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhhcCCChHHHHHHHc
Q psy8958         157 KDGSVDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILA  236 (294)
Q Consensus       157 ~~~~v~~~r~~~~~LG~~~d~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~~~~~~~~~~~il~  236 (294)
                                                                                     +||+|    +++..+|.
T Consensus       211 ---------------------------------------------------------------lmdkG----t~~~~~L~  223 (657)
T KOG0446|consen  211 ---------------------------------------------------------------FMDKG----TNAVTRLV  223 (657)
T ss_pred             ---------------------------------------------------------------hhhcC----Ccceeeec
Confidence                                                                           56776    78888899


Q ss_pred             CCcccCCCCCeEEEEeCCCCC---CCccHHHHHHHHHHHhccChhhhhhhhc
Q psy8958         237 GKLFPMKALGYFAVVTGRGGK---KDESIQDIKEYEENFFKKSKLFSTKVRQ  285 (294)
Q Consensus       237 ~~~~~L~~lG~~~v~~~~~~~---~~~~~~~~~~~e~~~f~~~~~~~~~~~~  285 (294)
                      |+.+||+ +||++||| |+|+   .+.++.+|+..|+.||.+||.|++.+-.
T Consensus       224 g~~~~l~-~g~v~vvn-R~q~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~  273 (657)
T KOG0446|consen  224 GRPITLK-VGYVGVVN-RSQSIIDFKKSILEALNDEVPSFESVPSYPILLTI  273 (657)
T ss_pred             CCccccc-cceeeeec-cchhhhhhhhhHHHHHHhhhhhhhccccccccccc
Confidence            9999999 99999999 6664   5668999999999999999999987655

>smart00053 DYNc Dynamin, GTPase

Probab=100.00  E-value=1.8e-38  Score=291.45  Aligned_cols=177  Identities=32%  Similarity=0.518  Sum_probs=159.8

Q ss_pred             CCcCceEEEEEeCCCccccccccccccCCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCCceEEeCCC
Q psy8958           1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPG   80 (294)
Q Consensus         1 vTRrPl~L~L~~~p~~~~~f~~~~~ef~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~LTLVDLPG   80 (294)
                      |||||++|+|++.+.+|+.|.+...    ..+.+++++.++|+++|+...+.+++||+++|+|+|+||++|+|+||||||
T Consensus        59 ~t~~p~~i~l~~~~~~~~~~~~~~~----~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPG  134 (240)
T smart00053       59 VTRRPLILQLINSSTEYAEFLHCKG----KKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPG  134 (240)
T ss_pred             ccccceEEEccCCCCcceEEEecCC----cccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCC
Confidence            7999999999999888888776542    355678888888888888888888999999999999999999999999999


Q ss_pred             CcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhhhhhhhcccc
Q psy8958          81 IISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGS  160 (294)
Q Consensus        81 i~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~~~~~~~~~~  160 (294)
                      ++..+..+|+.++..+|++|++.||+++++|||+|++|+.|+++++++++|+.+||.|.|||||+||+|..         
T Consensus       135 l~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~---------  205 (240)
T smart00053      135 ITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLM---------  205 (240)
T ss_pred             ccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCC---------
Confidence            99988888888999999999999999999999999999999999999999999999999999999999842         


Q ss_pred             ccccccccccCCccccccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhhcCCChHHHHHHHcCCcc
Q psy8958         161 VDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF  240 (294)
Q Consensus       161 v~~~r~~~~~LG~~~d~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~~~~~~~~~~~il~~~~~  240 (294)
                                                                                   +++    +++.++|.|+.+
T Consensus       206 -------------------------------------------------------------~~~----~~~~~~~~~~~~  220 (240)
T smart00053      206 -------------------------------------------------------------DEG----TDARDILENKLL  220 (240)
T ss_pred             -------------------------------------------------------------Ccc----HHHHHHHhCCcc
Confidence                                                                         122    459999999999


Q ss_pred             cCCCCCeEEEEeCCCCC
Q psy8958         241 PMKALGYFAVVTGRGGK  257 (294)
Q Consensus       241 ~L~~lG~~~v~~~~~~~  257 (294)
                      ||+ |||++|+| |+|+
T Consensus       221 ~l~-~g~~~v~n-r~~~  235 (240)
T smart00053      221 PLR-RGYIGVVN-RSQK  235 (240)
T ss_pred             ccC-CCEEEEEC-CChH
Confidence            999 99999999 6664

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.46  E-value=4.3e-13  Score=113.31  Aligned_cols=137  Identities=26%  Similarity=0.406  Sum_probs=106.1

Q ss_pred             CCcCceEEEEEeCCCcccccccc-ccccCCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCCceEEeCC
Q psy8958           1 MTRSPVKVTLSEGPYHVAQFKDS-SREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLP   79 (294)
Q Consensus         1 vTRrPl~L~L~~~p~~~~~f~~~-~~ef~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~LTLVDLP   79 (294)
                      ||++|+.++..+.+.....+... ... ....+.++.++.+.+........+....++..++.+....+...+++|||+|
T Consensus        31 ~T~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvDtP  109 (168)
T PF00350_consen   31 CTAVPTEISYGDEPEIEHEEAIIEFKD-GSEEFEELNELREQIDEEFDSIEGKLEQISSKVIVISISSPLLRNLTLVDTP  109 (168)
T ss_dssp             TTSSEEEEEEEESSSCCTSEEEECEEE-ETEEBCCHHHHHHHHHHHHHHHHTSSS-S-SSEEEEEEEETTSCSEEEEEEE
T ss_pred             cccceeEEEecccCccccccccccccc-cccchhhHHHHHHhhhcccccccccccccccceeEEeeccccccceEEEeCC
Confidence            79999999999887532111000 000 0245677888888887776655555678899999999999999999999999


Q ss_pred             CCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          80 GIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        80 Gi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      |+.......+         +++.+|+ +...++|+|++++.++.+++...+.+..++...|+|+|+||.
T Consensus       110 G~~~~~~~~~---------~~~~~~~-~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~  168 (168)
T PF00350_consen  110 GLNSTNSEHT---------EITEEYL-PKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA  168 (168)
T ss_dssp             EBHSSHTTTS---------HHHHHHH-STTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred             ccccchhhhH---------HHHHHhh-ccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence            9976433222         8999999 777899999999999999999999999999999999999994

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles

Probab=99.03  E-value=6.1e-11  Score=111.25  Aligned_cols=57  Identities=28%  Similarity=0.566  Sum_probs=42.9

Q ss_pred             HHHHHcCCcccCCCCCeEEEEeCCCCC---CCccHHHHHHHHHHHhccChhhhhhhhcCCCCCcC
Q psy8958         231 IKKILAGKLFPMKALGYFAVVTGRGGK---KDESIQDIKEYEENFFKKSKLFSTKVRQGNQGSSG  292 (294)
Q Consensus       231 ~~~il~~~~~~L~~lG~~~v~~~~~~~---~~~~~~~~~~~e~~~f~~~~~~~~~~~~~~~~~~~  292 (294)
                      +.+||+|+.+||+ |||++|+| |||+   ++.|+.++++.|++||++||+|+.   ..++.||.
T Consensus         1 ~~~iL~n~~~pLk-lGy~~V~n-rsq~di~~~~s~~~a~~~E~~fF~~~~~~~~---~~~~~G~~   60 (295)
T PF01031_consen    1 AMDILRNKVIPLK-LGYVGVKN-RSQQDINDGKSIEEARQKEKEFFSNHPWYSS---PADRCGTP   60 (295)
T ss_dssp             SHHHHTTSSS--T-T-EEEE---S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGG---GGGGSSHH
T ss_pred             ChHHhCCCeeccC-CCeEEEec-CCccccccCCCHHHHHHHHHHHHhcccccCC---cccccchH
Confidence            3589999999999 99999999 6664   788999999999999999999998   23455553

At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....

>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]

Probab=97.53  E-value=3.5e-05  Score=76.32  Aligned_cols=112  Identities=20%  Similarity=0.269  Sum_probs=103.1

Q ss_pred             CCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCc
Q psy8958          31 KESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNA  110 (294)
Q Consensus        31 ~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~s  110 (294)
                      .+.++..+..+....+....+...++...++.+.+.-+....++.+|+||+...+...+++++......+...|+..+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (546)
T COG0699          13 RFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDELLDLGKIEIENA   92 (546)
T ss_pred             hhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHHHHhhHHHHHHH
Confidence            45778889999988888877788999999999999999999999999999999999999999888888999999999999


Q ss_pred             eEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958         111 IILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus       111 IILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      +|...++++.+.++..+...++..++       +.||.+
T Consensus        93 li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  124 (546)
T COG0699          93 LILLGIAPNADEEAELSIEVIREADR-------VPTKIN  124 (546)
T ss_pred             HHhcchhhhhhhccchhhHhhhhhcc-------hhHHHH
Confidence            99999999999999999999999998       777743

>cd00880 Era_like Era (E

Probab=97.11  E-value=0.0038  Score=49.64  Aligned_cols=89  Identities=17%  Similarity=0.273  Sum_probs=54.7

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhc
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQM  134 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~  134 (294)
                      +.+.......+......+++++|+||+.......+      ....+...++...+.+++++-+...+......  +....
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~------~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~--~~~~~  100 (163)
T cd00880          29 GTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGR------EREELARRVLERADLILFVVDADLRADEEEEK--LLELL  100 (163)
T ss_pred             CcEECCeEEEEEecCCCcEEEEECCCCCccccchh------hHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHH
Confidence            34455555566655578999999999887554321      11345566777788666655554433222222  33333


Q ss_pred             CCCCCeEEEEeccchhh
Q psy8958         135 DPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       135 DP~G~RTIGVlTK~D~~  151 (294)
                      ...+...+.|+||.|+.
T Consensus       101 ~~~~~~~ivv~nK~D~~  117 (163)
T cd00880         101 RERGKPVLLVLNKIDLL  117 (163)
T ss_pred             HhcCCeEEEEEEccccC
Confidence            33467899999999964

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=97.07  E-value=0.0013  Score=56.56  Aligned_cols=75  Identities=16%  Similarity=0.306  Sum_probs=51.7

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCC--ceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPN--AIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~--sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      .+.++|+||+....   ++.........++..|++...  ..++.|++++..+..+.. ++.+.++..+...|.|+||+|
T Consensus        65 ~~~liDtpG~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~~~~pviiv~nK~D  140 (179)
T TIGR03598        65 GFRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRERGIPVLIVLTKAD  140 (179)
T ss_pred             cEEEEeCCCCcccc---CChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHHcCCCEEEEEECcc
Confidence            79999999976543   234455677788888887532  345666777765554444 344555556788999999999


Q ss_pred             h
Q psy8958         150 Q  150 (294)
Q Consensus       150 ~  150 (294)
                      +
T Consensus       141 ~  141 (179)
T TIGR03598       141 K  141 (179)
T ss_pred             c
Confidence            5

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG0218 Predicted GTPase [General function prediction only]

Probab=97.00  E-value=0.0026  Score=57.69  Aligned_cols=112  Identities=14%  Similarity=0.196  Sum_probs=73.1

Q ss_pred             CCCCcHHHHHHHHHHHHh-cccCCCccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCC
Q psy8958          30 TKESDLVELRKEVERRMM-NSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNP  108 (294)
Q Consensus        30 ~~~~d~~~i~~ei~~~m~-~~~g~~~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p  108 (294)
                      .+-..=+.+++.+...-. ..++...|.+-.+-..++..-    +-||||||+=...+   |.+..+...+|+..|++..
T Consensus        32 RSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~----~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R  104 (200)
T COG0218          32 RSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE----LRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKR  104 (200)
T ss_pred             cCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc----EEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhc
Confidence            344444666555432110 112334566666666666554    89999999877665   5688999999999999997


Q ss_pred             CceEEEe--ccCCCcchh--cHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958         109 NAIILCI--QDGSVDAER--SNVTDLVSQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       109 ~sIILaV--~~a~~D~an--s~al~lar~~DP~G~RTIGVlTK~D~~  151 (294)
                      .+|-++|  +++...+..  .+.++.+++   .|-.++-|+||+|+.
T Consensus       105 ~~L~~vvlliD~r~~~~~~D~em~~~l~~---~~i~~~vv~tK~DKi  148 (200)
T COG0218         105 ANLKGVVLLIDARHPPKDLDREMIEFLLE---LGIPVIVVLTKADKL  148 (200)
T ss_pred             hhheEEEEEEECCCCCcHHHHHHHHHHHH---cCCCeEEEEEccccC
Confidence            7766554  455544433  344455544   467899999999964

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=96.69  E-value=0.0051  Score=50.06  Aligned_cols=75  Identities=17%  Similarity=0.320  Sum_probs=50.9

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCce--EEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAI--ILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sI--ILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      .++++|+||+.....   +.+..+....++..|++..+.+  ++.|+++.... +..-.++.+.++..+...+.|+||+|
T Consensus        46 ~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~~~~~~~~l~~~~~~vi~v~nK~D  121 (170)
T cd01876          46 KFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGP-TEIDLEMLDWLEELGIPFLVVLTKAD  121 (170)
T ss_pred             eEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCC-CHhHHHHHHHHHHcCCCEEEEEEchh
Confidence            899999999866544   4556677888889999876543  45566655432 22223444555555677899999999


Q ss_pred             h
Q psy8958         150 Q  150 (294)
Q Consensus       150 ~  150 (294)
                      +
T Consensus       122 ~  122 (170)
T cd01876         122 K  122 (170)
T ss_pred             c
Confidence            5

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=96.44  E-value=0.0049  Score=53.73  Aligned_cols=71  Identities=25%  Similarity=0.388  Sum_probs=45.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcC-CCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMS-NPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~-~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      ..+.||||||+......  +.+ +    .+..+|+. .+-.+|+.|++|+. +  ..-+.++.++-..|...|-|+||.|
T Consensus        47 ~~~~lvDlPG~ysl~~~--s~e-e----~v~~~~l~~~~~D~ii~VvDa~~-l--~r~l~l~~ql~e~g~P~vvvlN~~D  116 (156)
T PF02421_consen   47 QQVELVDLPGIYSLSSK--SEE-E----RVARDYLLSEKPDLIIVVVDATN-L--ERNLYLTLQLLELGIPVVVVLNKMD  116 (156)
T ss_dssp             EEEEEEE----SSSSSS--SHH-H----HHHHHHHHHTSSSEEEEEEEGGG-H--HHHHHHHHHHHHTTSSEEEEEETHH
T ss_pred             ceEEEEECCCcccCCCC--CcH-H----HHHHHHHhhcCCCEEEEECCCCC-H--HHHHHHHHHHHHcCCCEEEEEeCHH
Confidence            77999999999775432  221 2    34455552 33347778888875 4  3446677777777999999999999


Q ss_pred             hh
Q psy8958         150 QQ  151 (294)
Q Consensus       150 ~~  151 (294)
                      .+
T Consensus       117 ~a  118 (156)
T PF02421_consen  117 EA  118 (156)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=96.40  E-value=0.0083  Score=52.55  Aligned_cols=76  Identities=16%  Similarity=0.257  Sum_probs=46.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchh--cHHHHhhhhc-CCC-CCeEEEEec
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAER--SNVTDLVSQM-DPQ-GKRTIFVLT  146 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~an--s~al~lar~~-DP~-G~RTIGVlT  146 (294)
                      ..+++||+||+.....  ..+++...+...+......++ +||.|+++.. +..  ..+++..+++ .+. ...+|.|+|
T Consensus        49 ~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~~~~~g~~-~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T  124 (196)
T cd01852          49 RRVNVIDTPGLFDTSV--SPEQLSKEIVRCLSLSAPGPH-AFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFT  124 (196)
T ss_pred             eEEEEEECcCCCCccC--ChHHHHHHHHHHHHhcCCCCE-EEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEE
Confidence            4699999999997643  233444444444444445566 5566667765 443  3345444443 322 258999999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|.
T Consensus       125 ~~d~  128 (196)
T cd01852         125 RGDD  128 (196)
T ss_pred             Cccc
Confidence            9984

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd01894 EngA1 EngA1 subfamily

Probab=96.18  E-value=0.034  Score=45.16  Aligned_cols=72  Identities=19%  Similarity=0.376  Sum_probs=44.2

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.++|+||+.....     .....+.+....++...+.+|++ +++...  ..+....+++++   .+...|.|+||.
T Consensus        45 ~~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~d~ii~v-~d~~~~~~~~~~~~~~~~~~---~~~piiiv~nK~  115 (157)
T cd01894          45 REFILIDTGGIEPDDE-----GISKEIREQAELAIEEADVILFV-VDGREGLTPADEEIAKYLRK---SKKPVILVVNKV  115 (157)
T ss_pred             eEEEEEECCCCCCchh-----HHHHHHHHHHHHHHHhCCEEEEE-EeccccCCccHHHHHHHHHh---cCCCEEEEEECc
Confidence            5699999999875332     23344444555666666655554 555432  223334455554   358899999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       116 D~~  118 (157)
T cd01894         116 DNI  118 (157)
T ss_pred             ccC
Confidence            953

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04163 Era Era subfamily

Probab=96.00  E-value=0.0078  Score=48.74  Aligned_cols=74  Identities=12%  Similarity=0.250  Sum_probs=46.1

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      ..++.++|+||+......     ..+.+..+...++...+.+++++-..+.  .++....+.+.+...+...+.|+||.|
T Consensus        50 ~~~~~liDtpG~~~~~~~-----~~~~~~~~~~~~~~~~d~i~~v~d~~~~--~~~~~~~~~~~~~~~~~~~iiv~nK~D  122 (168)
T cd04163          50 DAQIIFVDTPGIHKPKKK-----LGERMVKAAWSALKDVDLVLFVVDASEP--IGEGDEFILELLKKSKTPVILVLNKID  122 (168)
T ss_pred             CeEEEEEECCCCCcchHH-----HHHHHHHHHHHHHHhCCEEEEEEECCCc--cCchHHHHHHHHHHhCCCEEEEEEchh
Confidence            457999999998754321     1223556677788888877666555443  122222333333333677899999999


Q ss_pred             h
Q psy8958         150 Q  150 (294)
Q Consensus       150 ~  150 (294)
                      +
T Consensus       123 l  123 (168)
T cd04163         123 L  123 (168)
T ss_pred             c
Confidence            5

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=95.95  E-value=0.017  Score=49.52  Aligned_cols=76  Identities=16%  Similarity=0.316  Sum_probs=47.6

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCc--eEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNA--IILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~s--IILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..|+|+|+||+....   .+....+....++..|++....  .++.|++++....... ..+.+.+...+...+.|+||+
T Consensus        70 ~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~i~~~l~~~~~~~iiv~nK~  145 (196)
T PRK00454         70 DKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELD-LQMIEWLKEYGIPVLIVLTKA  145 (196)
T ss_pred             CeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHH-HHHHHHHHHcCCcEEEEEECc
Confidence            679999999976432   2444566677888889887643  3444555554322211 222333344567789999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       146 Dl  147 (196)
T PRK00454        146 DK  147 (196)
T ss_pred             cc
Confidence            95

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=95.80  E-value=0.037  Score=54.10  Aligned_cols=88  Identities=19%  Similarity=0.302  Sum_probs=57.3

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc--HHHHhh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS--NVTDLV  131 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans--~al~la  131 (294)
                      .+.+.+.....+...+. .++|+|+||+..     ....+.+.+.+++..+++.... ||.|+++...+...  ...+..
T Consensus        31 ~g~t~d~~~~~~~~~~~-~~~liDTpG~~~-----~~~~~~~~~~~~~~~~~~~ad~-vl~vvD~~~~~~~~d~~i~~~l  103 (429)
T TIGR03594        31 PGVTRDRKYGDAEWGGR-EFILIDTGGIEE-----DDDGLDKQIREQAEIAIEEADV-ILFVVDGREGLTPEDEEIAKWL  103 (429)
T ss_pred             CCcccCceEEEEEECCe-EEEEEECCCCCC-----cchhHHHHHHHHHHHHHhhCCE-EEEEEeCCCCCCHHHHHHHHHH
Confidence            34555555555544333 599999999852     2345668888899999999884 55555666433322  234444


Q ss_pred             hhcCCCCCeEEEEeccchhh
Q psy8958         132 SQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       132 r~~DP~G~RTIGVlTK~D~~  151 (294)
                      ++   .+...|.|++|+|+.
T Consensus       104 ~~---~~~piilVvNK~D~~  120 (429)
T TIGR03594       104 RK---SGKPVILVANKIDGK  120 (429)
T ss_pred             HH---hCCCEEEEEECccCC
Confidence            44   467799999999964

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=95.75  E-value=0.047  Score=48.06  Aligned_cols=72  Identities=29%  Similarity=0.452  Sum_probs=40.3

Q ss_pred             eCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcH--HHHhhhhcCCCCCeEEE
Q psy8958          66 KGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSN--VTDLVSQMDPQGKRTIF  143 (294)
Q Consensus        66 ~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~--al~lar~~DP~G~RTIG  143 (294)
                      ..++.++++++|+||+-.....     ..+.++.+.   +..-. ++|.|.+.  ++...+  .++..++.   |.+.+.
T Consensus        47 ~~~~~~~l~l~DtpG~~~~~~~-----~~~~l~~~~---~~~~d-~~l~v~~~--~~~~~d~~~~~~l~~~---~~~~il  112 (197)
T cd04104          47 PHPKFPNVTLWDLPGIGSTAFP-----PDDYLEEMK---FSEYD-FFIIISST--RFSSNDVKLAKAIQCM---GKKFYF  112 (197)
T ss_pred             ecCCCCCceEEeCCCCCcccCC-----HHHHHHHhC---ccCcC-EEEEEeCC--CCCHHHHHHHHHHHHh---CCCEEE
Confidence            3355789999999998753221     112222221   22333 44444433  343332  34455554   789999


Q ss_pred             Eeccchhh
Q psy8958         144 VLTKVSQQ  151 (294)
Q Consensus       144 VlTK~D~~  151 (294)
                      |+||+|+.
T Consensus       113 V~nK~D~~  120 (197)
T cd04104         113 VRTKVDRD  120 (197)
T ss_pred             EEecccch
Confidence            99999964

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR00436 era GTP-binding protein Era

Probab=95.58  E-value=0.094  Score=48.55  Aligned_cols=72  Identities=11%  Similarity=0.247  Sum_probs=44.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchh-cHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAER-SNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~an-s~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      ..++|+|+||+....     ..+...+.+.+.+++...+.++ .|++++..... ..++...+.   .+...|.|+||.|
T Consensus        48 ~qii~vDTPG~~~~~-----~~l~~~~~~~~~~~l~~aDvvl-~VvD~~~~~~~~~~i~~~l~~---~~~p~ilV~NK~D  118 (270)
T TIGR00436        48 SQIIFIDTPGFHEKK-----HSLNRLMMKEARSAIGGVDLIL-FVVDSDQWNGDGEFVLTKLQN---LKRPVVLTRNKLD  118 (270)
T ss_pred             cEEEEEECcCCCCCc-----chHHHHHHHHHHHHHhhCCEEE-EEEECCCCCchHHHHHHHHHh---cCCCEEEEEECee
Confidence            459999999997642     1233334445667788777554 45566542222 233333333   4577999999999


Q ss_pred             hh
Q psy8958         150 QQ  151 (294)
Q Consensus       150 ~~  151 (294)
                      +.
T Consensus       119 l~  120 (270)
T TIGR00436       119 NK  120 (270)
T ss_pred             CC
Confidence            74

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=95.42  E-value=0.073  Score=51.82  Aligned_cols=86  Identities=14%  Similarity=0.276  Sum_probs=54.6

Q ss_pred             cceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcH---HHHhhhhcC
Q psy8958          59 EVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSN---VTDLVSQMD  135 (294)
Q Consensus        59 ~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~---al~lar~~D  135 (294)
                      ++..-.+.-|+...+.|+|+||+++.    -|.+..+.++... .++.+.+ +||.|++++.......   ..++.+++.
T Consensus       225 d~~~~~i~~~~~~~i~l~DT~G~~~~----l~~~lie~f~~tl-e~~~~AD-lil~VvD~s~~~~~~~~~~~~~~L~~l~  298 (351)
T TIGR03156       225 DPTTRRLDLPDGGEVLLTDTVGFIRD----LPHELVAAFRATL-EEVREAD-LLLHVVDASDPDREEQIEAVEKVLEELG  298 (351)
T ss_pred             CCEEEEEEeCCCceEEEEecCccccc----CCHHHHHHHHHHH-HHHHhCC-EEEEEEECCCCchHHHHHHHHHHHHHhc
Confidence            45555666666668999999999753    2455666666654 3566666 5566666653221111   234555555


Q ss_pred             CCCCeEEEEeccchh
Q psy8958         136 PQGKRTIFVLTKVSQ  150 (294)
Q Consensus       136 P~G~RTIGVlTK~D~  150 (294)
                      -.+...|-|++|+|+
T Consensus       299 ~~~~piIlV~NK~Dl  313 (351)
T TIGR03156       299 AEDIPQLLVYNKIDL  313 (351)
T ss_pred             cCCCCEEEEEEeecC
Confidence            445678999999995

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=95.41  E-value=0.05  Score=43.27  Aligned_cols=72  Identities=26%  Similarity=0.438  Sum_probs=42.7

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK  147 (294)
                      +-..+.|+|+||+......+   .....+.+ +.+++..-+. |+.|++++. ..+....++.+.+. .+...|-|+||
T Consensus        45 ~~~~~~~vDtpG~~~~~~~~---~~~~~~~~-~~~~~~~~d~-ii~vv~~~~-~~~~~~~~~~~~l~-~~~~~i~v~NK  116 (116)
T PF01926_consen   45 NNKKFILVDTPGINDGESQD---NDGKEIRK-FLEQISKSDL-IIYVVDASN-PITEDDKNILRELK-NKKPIILVLNK  116 (116)
T ss_dssp             TTEEEEEEESSSCSSSSHHH---HHHHHHHH-HHHHHCTESE-EEEEEETTS-HSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred             ceeeEEEEeCCCCcccchhh---HHHHHHHH-HHHHHHHCCE-EEEEEECCC-CCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence            33445899999987543211   11123334 4444455554 555555665 33444455666665 78999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd04165 GTPBP1_like GTPBP1-like

Probab=95.40  E-value=0.037  Score=50.35  Aligned_cols=73  Identities=10%  Similarity=0.115  Sum_probs=44.1

Q ss_pred             EEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcC-CCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEE
Q psy8958          64 SVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMS-NPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTI  142 (294)
Q Consensus        64 eI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~-~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTI  142 (294)
                      ++....-..++|||+||..            ..++.++..... .++ +++.|++|...+..+ ..+++..+...|...|
T Consensus        77 ~~~~~~~~~i~liDtpG~~------------~~~~~~~~~~~~~~~D-~~llVvda~~g~~~~-d~~~l~~l~~~~ip~i  142 (224)
T cd04165          77 EICEKSSKLVTFIDLAGHE------------RYLKTTLFGLTGYAPD-YAMLVVAANAGIIGM-TKEHLGLALALNIPVF  142 (224)
T ss_pred             eeeeeCCcEEEEEECCCcH------------HHHHHHHHhhcccCCC-EEEEEEECCCCCcHH-HHHHHHHHHHcCCCEE
Confidence            3444455689999999953            223444444332 355 455666777655433 2333333444567789


Q ss_pred             EEeccchh
Q psy8958         143 FVLTKVSQ  150 (294)
Q Consensus       143 GVlTK~D~  150 (294)
                      .|+||+|+
T Consensus       143 vvvNK~D~  150 (224)
T cd04165         143 VVVTKIDL  150 (224)
T ss_pred             EEEECccc
Confidence            99999995

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK00089 era GTPase Era; Reviewed

Probab=95.37  E-value=0.059  Score=50.10  Aligned_cols=73  Identities=14%  Similarity=0.254  Sum_probs=46.4

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchh--cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAER--SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~an--s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      -..++++|+||+....     ..+.+.+...+..++...+.|+++ ++++..+..  ...++..+   ..+...|.|+||
T Consensus        52 ~~qi~~iDTPG~~~~~-----~~l~~~~~~~~~~~~~~~D~il~v-vd~~~~~~~~~~~i~~~l~---~~~~pvilVlNK  122 (292)
T PRK00089         52 DAQIIFVDTPGIHKPK-----RALNRAMNKAAWSSLKDVDLVLFV-VDADEKIGPGDEFILEKLK---KVKTPVILVLNK  122 (292)
T ss_pred             CceEEEEECCCCCCch-----hHHHHHHHHHHHHHHhcCCEEEEE-EeCCCCCChhHHHHHHHHh---hcCCCEEEEEEC
Confidence            3689999999987533     223344555667778888866554 555543322  22333333   335789999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      .|+.
T Consensus       123 iDl~  126 (292)
T PRK00089        123 IDLV  126 (292)
T ss_pred             CcCC
Confidence            9964

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=95.28  E-value=0.068  Score=43.63  Aligned_cols=69  Identities=25%  Similarity=0.390  Sum_probs=40.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcC--CCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMS--NPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~--~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      .++.|+|+||+.......  .+     ..|...|+.  ..+.+|+ |+++.. ..+  .......+...+...|.|+||.
T Consensus        43 ~~~~liDtpG~~~~~~~~--~~-----~~~~~~~~~~~~~d~vi~-v~d~~~-~~~--~~~~~~~~~~~~~~~iiv~NK~  111 (158)
T cd01879          43 KEIEIVDLPGTYSLSPYS--ED-----EKVARDFLLGEKPDLIVN-VVDATN-LER--NLYLTLQLLELGLPVVVALNMI  111 (158)
T ss_pred             eEEEEEECCCccccCCCC--hh-----HHHHHHHhcCCCCcEEEE-EeeCCc-chh--HHHHHHHHHHcCCCEEEEEehh
Confidence            479999999986544321  11     245556665  5665554 555553 222  1222323333467899999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       112 Dl  113 (158)
T cd01879         112 DE  113 (158)
T ss_pred             hh
Confidence            96

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=95.15  E-value=0.052  Score=44.90  Aligned_cols=65  Identities=15%  Similarity=0.228  Sum_probs=40.3

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCCCCeEEEEec
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~G~RTIGVlT  146 (294)
                      ...+++++|+||...             ...+...++...+.++ .|++++..  ..+...+.+++.   .+...+.|+|
T Consensus        48 ~~~~~~iiDtpG~~~-------------~~~~~~~~~~~~d~il-~v~d~~~~~~~~~~~~~~~~~~---~~~p~ivv~N  110 (168)
T cd01887          48 KIPGITFIDTPGHEA-------------FTNMRARGASLTDIAI-LVVAADDGVMPQTIEAIKLAKA---ANVPFIVALN  110 (168)
T ss_pred             CcceEEEEeCCCcHH-------------HHHHHHHHHhhcCEEE-EEEECCCCccHHHHHHHHHHHH---cCCCEEEEEE
Confidence            467899999999521             2345556666666554 45555432  122334455554   4567999999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       111 K~Dl  114 (168)
T cd01887         111 KIDK  114 (168)
T ss_pred             ceec
Confidence            9995

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=95.10  E-value=0.04  Score=51.15  Aligned_cols=79  Identities=14%  Similarity=0.271  Sum_probs=48.7

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCC-CCceEEEeccCCC---cchhcHHHHhhhh-cCCC-CCeEEE
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSN-PNAIILCIQDGSV---DAERSNVTDLVSQ-MDPQ-GKRTIF  143 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~-p~sIILaV~~a~~---D~ans~al~lar~-~DP~-G~RTIG  143 (294)
                      ...+++||+||+......+   ...+.+.+.+++|+++ +-.+||.|...+.   +.....+++..++ +.+. ..++|.
T Consensus        78 g~~i~vIDTPGl~~~~~~~---~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~iv  154 (249)
T cd01853          78 GFKLNIIDTPGLLESVMDQ---RVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIV  154 (249)
T ss_pred             CeEEEEEECCCcCcchhhH---HHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEE
Confidence            4679999999998654321   2345566777888874 2235666654442   2333345554443 3321 357999


Q ss_pred             Eeccchhh
Q psy8958         144 VLTKVSQQ  151 (294)
Q Consensus       144 VlTK~D~~  151 (294)
                      |+||+|..
T Consensus       155 V~T~~d~~  162 (249)
T cd01853         155 VLTHAASS  162 (249)
T ss_pred             EEeCCccC
Confidence            99999964

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd01890 LepA LepA subfamily

Probab=95.04  E-value=0.073  Score=44.82  Aligned_cols=79  Identities=14%  Similarity=0.174  Sum_probs=45.7

Q ss_pred             cccceEEEEeC--CCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhc
Q psy8958          57 SNEVISMSVKG--PGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQM  134 (294)
Q Consensus        57 S~~~I~leI~g--P~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~  134 (294)
                      ....+.+...+  ..-..+.|+|+||...             ...++..|+...+++|+++ +++.....+ .+......
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~-D~~~~~~~~-~~~~~~~~  115 (179)
T cd01890          51 KAQTVRLNYKAKDGQEYLLNLIDTPGHVD-------------FSYEVSRSLAACEGALLLV-DATQGVEAQ-TLANFYLA  115 (179)
T ss_pred             ecceEEEEEecCCCCcEEEEEEECCCChh-------------hHHHHHHHHHhcCeEEEEE-ECCCCccHh-hHHHHHHH
Confidence            33444454432  2335688999999753             2346677888888777655 444332211 11211222


Q ss_pred             CCCCCeEEEEeccchh
Q psy8958         135 DPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       135 DP~G~RTIGVlTK~D~  150 (294)
                      ...+...|.|+||.|+
T Consensus       116 ~~~~~~iiiv~NK~Dl  131 (179)
T cd01890         116 LENNLEIIPVINKIDL  131 (179)
T ss_pred             HHcCCCEEEEEECCCC
Confidence            2245679999999995

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=95.01  E-value=0.2  Score=40.43  Aligned_cols=73  Identities=19%  Similarity=0.260  Sum_probs=41.8

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      ...++++|+||+......     ....--..+..++.+.+. ++.|++++.-... .-.++.+.  ..+...|.|+||.|
T Consensus        48 ~~~~~i~DtpG~~~~~~~-----~~~~~~~~~~~~~~~~~~-~v~v~d~~~~~~~-~~~~~~~~--~~~~~vi~v~nK~D  118 (157)
T cd04164          48 GIPVRLIDTAGIRETEDE-----IEKIGIERAREAIEEADL-VLFVIDASRGLDE-EDLEILEL--PADKPIIVVLNKSD  118 (157)
T ss_pred             CEEEEEEECCCcCCCcch-----HHHHHHHHHHHHHhhCCE-EEEEEECCCCCCH-HHHHHHHh--hcCCCEEEEEEchh
Confidence            357899999998654321     111112234455566664 4556666642222 22333333  34688999999999


Q ss_pred             hh
Q psy8958         150 QQ  151 (294)
Q Consensus       150 ~~  151 (294)
                      +.
T Consensus       119 ~~  120 (157)
T cd04164         119 LL  120 (157)
T ss_pred             cC
Confidence            53

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=94.95  E-value=0.15  Score=50.09  Aligned_cols=71  Identities=20%  Similarity=0.419  Sum_probs=49.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||+...     ..+....++..+..++.....||++| ++...+  ......+..++.   +...|.|++|+
T Consensus        49 ~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~vv-d~~~~~~~~~~~~~~~l~~~---~~piilv~NK~  119 (435)
T PRK00093         49 REFILIDTGGIEPD-----DDGFEKQIREQAELAIEEADVILFVV-DGRAGLTPADEEIAKILRKS---NKPVILVVNKV  119 (435)
T ss_pred             cEEEEEECCCCCCc-----chhHHHHHHHHHHHHHHhCCEEEEEE-ECCCCCCHHHHHHHHHHHHc---CCcEEEEEECc
Confidence            67999999999762     12366777888888999888665555 444322  223344555554   68899999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |.
T Consensus       120 D~  121 (435)
T PRK00093        120 DG  121 (435)
T ss_pred             cC
Confidence            95

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=94.95  E-value=0.034  Score=49.80  Aligned_cols=76  Identities=18%  Similarity=0.306  Sum_probs=45.0

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhhh-hcCCC-CCeEEEEec
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLVS-QMDPQ-GKRTIFVLT  146 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~lar-~~DP~-G~RTIGVlT  146 (294)
                      ..+++||+||+.....  .++++...|.+.+......+++|+|+ +++. .+.  ...+++..+ -+.+. ..+||-|+|
T Consensus        49 ~~v~VIDTPGl~d~~~--~~~~~~~~i~~~l~~~~~g~ha~llV-i~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT  124 (212)
T PF04548_consen   49 RQVTVIDTPGLFDSDG--SDEEIIREIKRCLSLCSPGPHAFLLV-IPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFT  124 (212)
T ss_dssp             EEEEEEE--SSEETTE--EHHHHHHHHHHHHHHTTT-ESEEEEE-EETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred             eEEEEEeCCCCCCCcc--cHHHHHHHHHHHHHhccCCCeEEEEE-EecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhh
Confidence            5689999999976554  23445555555444445568876655 5555 444  444554444 44432 468999999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      ..|.
T Consensus       125 ~~d~  128 (212)
T PF04548_consen  125 HADE  128 (212)
T ss_dssp             EGGG
T ss_pred             hccc
Confidence            9884

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK03003 GTP-binding protein Der; Reviewed

Probab=94.91  E-value=0.1  Score=52.37  Aligned_cols=89  Identities=21%  Similarity=0.310  Sum_probs=55.5

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQ  133 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~  133 (294)
                      .+++.+.+...+.-.+. .+.|+|+||+...     ...+...+...+..|++..+.| |.|+++..-... .-..+++.
T Consensus        70 ~gvT~d~~~~~~~~~~~-~~~l~DT~G~~~~-----~~~~~~~~~~~~~~~~~~aD~i-l~VvD~~~~~s~-~~~~i~~~  141 (472)
T PRK03003         70 PGVTRDRVSYDAEWNGR-RFTVVDTGGWEPD-----AKGLQASVAEQAEVAMRTADAV-LFVVDATVGATA-TDEAVARV  141 (472)
T ss_pred             CCCCEeeEEEEEEECCc-EEEEEeCCCcCCc-----chhHHHHHHHHHHHHHHhCCEE-EEEEECCCCCCH-HHHHHHHH
Confidence            34555555555544333 4899999997632     2345677888888899988855 555555532221 11223333


Q ss_pred             cCCCCCeEEEEeccchh
Q psy8958         134 MDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       134 ~DP~G~RTIGVlTK~D~  150 (294)
                      +...+.-.|.|++|+|+
T Consensus       142 l~~~~~piilV~NK~Dl  158 (472)
T PRK03003        142 LRRSGKPVILAANKVDD  158 (472)
T ss_pred             HHHcCCCEEEEEECccC
Confidence            33457889999999996

>PRK04213 GTP-binding protein; Provisional

Probab=94.87  E-value=0.11  Score=45.05  Aligned_cols=86  Identities=17%  Similarity=0.270  Sum_probs=50.1

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCC-CC--ceEEEeccCCCcchh-------
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSN-PN--AIILCIQDGSVDAER-------  124 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~-p~--sIILaV~~a~~D~an-------  124 (294)
                      +.+-++..+.+.     +++++|+||+-...  +-++...+.++.+...|+.. -.  -+++.|++++.....       
T Consensus        41 ~~t~~~~~~~~~-----~~~l~Dt~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~  113 (201)
T PRK04213         41 GVTRKPNHYDWG-----DFILTDLPGFGFMS--GVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGR  113 (201)
T ss_pred             ceeeCceEEeec-----ceEEEeCCcccccc--ccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccC
Confidence            344444444433     69999999974322  22334457778888888763 22  255566666532111       


Q ss_pred             ------cHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958         125 ------SNVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       125 ------s~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                            ...++.++.   .+...|.|+||.|+
T Consensus       114 ~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl  142 (201)
T PRK04213        114 GEIPIDVEMFDFLRE---LGIPPIVAVNKMDK  142 (201)
T ss_pred             CCcHHHHHHHHHHHH---cCCCeEEEEECccc
Confidence                  112333333   46788999999995

>cd01878 HflX HflX subfamily

Probab=94.66  E-value=0.23  Score=43.19  Aligned_cols=86  Identities=16%  Similarity=0.266  Sum_probs=49.0

Q ss_pred             ceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchh---cHHHHhhhhcCC
Q psy8958          60 VISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAER---SNVTDLVSQMDP  136 (294)
Q Consensus        60 ~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~an---s~al~lar~~DP  136 (294)
                      +....+.-++...++++|+||+....    +.........+.. ++.+.+. ++.|++++.....   +...++.+.+..
T Consensus        78 ~~~~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~~~~-~~~~~d~-ii~v~D~~~~~~~~~~~~~~~~l~~~~~  151 (204)
T cd01878          78 PTTRRLRLPDGREVLLTDTVGFIRDL----PHQLVEAFRSTLE-EVAEADL-LLHVVDASDPDYEEQIETVEKVLKELGA  151 (204)
T ss_pred             ceeEEEEecCCceEEEeCCCccccCC----CHHHHHHHHHHHH-HHhcCCe-EEEEEECCCCChhhHHHHHHHHHHHcCc
Confidence            33334444444479999999986432    2333344455443 3444554 4455555532221   223455566665


Q ss_pred             CCCeEEEEeccchhh
Q psy8958         137 QGKRTIFVLTKVSQQ  151 (294)
Q Consensus       137 ~G~RTIGVlTK~D~~  151 (294)
                      .+...|.|+||.|+.
T Consensus       152 ~~~~viiV~NK~Dl~  166 (204)
T cd01878         152 EDIPMILVLNKIDLL  166 (204)
T ss_pred             CCCCEEEEEEccccC
Confidence            567899999999953

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=94.65  E-value=0.14  Score=50.11  Aligned_cols=76  Identities=14%  Similarity=0.238  Sum_probs=46.2

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~  151 (294)
                      .++|+|+||+.+.....  +.+..........+++..+.+|+ |+++...+..++ .++++.+...|..-|.|++|+|+.
T Consensus       221 ~~~liDT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~il-V~D~~~~~~~~~-~~~~~~~~~~~~~iiiv~NK~Dl~  296 (429)
T TIGR03594       221 KYLLIDTAGIRRKGKVT--EGVEKYSVLRTLKAIERADVVLL-VLDATEGITEQD-LRIAGLILEAGKALVIVVNKWDLV  296 (429)
T ss_pred             EEEEEECCCccccccch--hhHHHHHHHHHHHHHHhCCEEEE-EEECCCCccHHH-HHHHHHHHHcCCcEEEEEECcccC
Confidence            79999999997654321  11211111223457777775555 555554444333 345555555678999999999964

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=94.63  E-value=0.082  Score=51.12  Aligned_cols=76  Identities=16%  Similarity=0.260  Sum_probs=48.2

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCC--CCceEEEeccCC---CcchhcHHHHhhhhc--CCCCCeE
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSN--PNAIILCIQDGS---VDAERSNVTDLVSQM--DPQGKRT  141 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~--p~sIILaV~~a~---~D~ans~al~lar~~--DP~G~RT  141 (294)
                      +...+++||+||+...      ....+++.+.++.|+..  +. +||.|...+   .+-....+++..+++  +.-..+|
T Consensus        84 ~G~~l~VIDTPGL~d~------~~~~e~~~~~ik~~l~~~g~D-vVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~  156 (313)
T TIGR00991        84 AGFTLNIIDTPGLIEG------GYINDQAVNIIKRFLLGKTID-VLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKS  156 (313)
T ss_pred             CCeEEEEEECCCCCch------HHHHHHHHHHHHHHhhcCCCC-EEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccE
Confidence            4467999999999864      23445566777888764  44 455554322   232334556655554  2334789


Q ss_pred             EEEeccchhh
Q psy8958         142 IFVLTKVSQQ  151 (294)
Q Consensus       142 IGVlTK~D~~  151 (294)
                      |.|+|+.|..
T Consensus       157 IVVfTh~d~~  166 (313)
T TIGR00991       157 LVVLTHAQFS  166 (313)
T ss_pred             EEEEECCccC
Confidence            9999999853

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=94.61  E-value=0.15  Score=44.13  Aligned_cols=80  Identities=19%  Similarity=0.355  Sum_probs=49.0

Q ss_pred             cccccceEEEEe-CCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC--cchhcHHHHhh
Q psy8958          55 TVSNEVISMSVK-GPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV--DAERSNVTDLV  131 (294)
Q Consensus        55 ~~S~~~I~leI~-gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~--D~ans~al~la  131 (294)
                      +++-+.=..... ......++|+|+||..            +.+.++. .-+...+.+|| |++|+.  ...+.+.++++
T Consensus        53 ~~ti~~~~~~~~~~~~~~~i~~iDtPG~~------------~f~~~~~-~~~~~~D~ail-vVda~~g~~~~~~~~l~~~  118 (188)
T PF00009_consen   53 GITIDLSFISFEKNENNRKITLIDTPGHE------------DFIKEMI-RGLRQADIAIL-VVDANDGIQPQTEEHLKIL  118 (188)
T ss_dssp             TSSSSSEEEEEEBTESSEEEEEEEESSSH------------HHHHHHH-HHHTTSSEEEE-EEETTTBSTHHHHHHHHHH
T ss_pred             ccccccccccccccccccceeeccccccc------------ceeeccc-ceeccccccee-eeecccccccccccccccc
Confidence            344444444444 6677889999999942            1222333 33677776555 455553  34455567777


Q ss_pred             hhcCCCCCeEEEEeccchhh
Q psy8958         132 SQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       132 r~~DP~G~RTIGVlTK~D~~  151 (294)
                      +...   ...|.||||+|+.
T Consensus       119 ~~~~---~p~ivvlNK~D~~  135 (188)
T PF00009_consen  119 RELG---IPIIVVLNKMDLI  135 (188)
T ss_dssp             HHTT----SEEEEEETCTSS
T ss_pred             cccc---cceEEeeeeccch
Confidence            7764   4499999999953

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK00093 GTP-binding protein Der; Reviewed

Probab=94.48  E-value=0.12  Score=50.67  Aligned_cols=79  Identities=14%  Similarity=0.182  Sum_probs=46.9

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      +-..++|+|+||+.+......  .+......-..+++...+ ++|.|+++...+..++ .++++.+.-.|...|.|++|+
T Consensus       219 ~~~~~~lvDT~G~~~~~~~~~--~~e~~~~~~~~~~~~~ad-~~ilViD~~~~~~~~~-~~i~~~~~~~~~~~ivv~NK~  294 (435)
T PRK00093        219 DGQKYTLIDTAGIRRKGKVTE--GVEKYSVIRTLKAIERAD-VVLLVIDATEGITEQD-LRIAGLALEAGRALVIVVNKW  294 (435)
T ss_pred             CCeeEEEEECCCCCCCcchhh--HHHHHHHHHHHHHHHHCC-EEEEEEeCCCCCCHHH-HHHHHHHHHcCCcEEEEEECc
Confidence            345689999999876443221  111111111235666666 4555666665554443 345555555678899999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       295 Dl~  297 (435)
T PRK00093        295 DLV  297 (435)
T ss_pred             cCC
Confidence            964

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=94.47  E-value=0.21  Score=49.45  Aligned_cols=87  Identities=17%  Similarity=0.243  Sum_probs=50.9

Q ss_pred             cccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCC----Ccchh--cHHHHh
Q psy8958          57 SNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGS----VDAER--SNVTDL  130 (294)
Q Consensus        57 S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~----~D~an--s~al~l  130 (294)
                      +-.|+.-.+..++...++|+|+||++..+..+     ...-..++ ++++.-.. ||.|++++    .+...  +..++.
T Consensus       193 T~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~-----~~Lg~~~l-~~i~radv-lL~VVD~s~~~~~d~~e~~~~l~~e  265 (390)
T PRK12298        193 TLVPNLGVVRVDDERSFVVADIPGLIEGASEG-----AGLGIRFL-KHLERCRV-LLHLIDIAPIDGSDPVENARIIINE  265 (390)
T ss_pred             ccCcEEEEEEeCCCcEEEEEeCCCccccccch-----hhHHHHHH-HHHHhCCE-EEEEeccCcccccChHHHHHHHHHH
Confidence            34555555655666679999999998765432     12233444 36666664 45555554    22221  233344


Q ss_pred             hhhcCC--CCCeEEEEeccchh
Q psy8958         131 VSQMDP--QGKRTIFVLTKVSQ  150 (294)
Q Consensus       131 ar~~DP--~G~RTIGVlTK~D~  150 (294)
                      ...+.+  .....|-|+||+|+
T Consensus       266 L~~~~~~L~~kP~IlVlNKiDl  287 (390)
T PRK12298        266 LEKYSPKLAEKPRWLVFNKIDL  287 (390)
T ss_pred             HHhhhhhhcCCCEEEEEeCCcc
Confidence            444443  24678999999996

>cd01895 EngA2 EngA2 subfamily

Probab=94.26  E-value=0.35  Score=39.52  Aligned_cols=76  Identities=14%  Similarity=0.239  Sum_probs=41.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                      .+++++|+||+.......  .........-...++...+.+|+ |++++.... .....+.+.+...+..-|.|+||+|+
T Consensus        50 ~~~~iiDtpG~~~~~~~~--~~~e~~~~~~~~~~~~~~d~vi~-v~d~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl  125 (174)
T cd01895          50 KKYTLIDTAGIRRKGKVE--EGIEKYSVLRTLKAIERADVVLL-VIDATEGIT-EQDLRIAGLILEEGKALVIVVNKWDL  125 (174)
T ss_pred             eeEEEEECCCCccccchh--ccHHHHHHHHHHHHHhhcCeEEE-EEeCCCCcc-hhHHHHHHHHHhcCCCEEEEEecccc
Confidence            358999999987653211  11111111112244555665544 445554433 33344444444456788999999995

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK11058 GTPase HflX; Provisional

Probab=94.16  E-value=0.27  Score=49.18  Aligned_cols=87  Identities=15%  Similarity=0.265  Sum_probs=52.6

Q ss_pred             cceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchhcH--HHHhhhhcC
Q psy8958          59 EVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAERSN--VTDLVSQMD  135 (294)
Q Consensus        59 ~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~ans~--al~lar~~D  135 (294)
                      ++..-.+.-++.-...|+|+||+++.    .|.+..+.+... ..++...+ +||.|++++. +...+.  ..++.+++.
T Consensus       233 d~~~~~i~l~~~~~~~l~DTaG~~r~----lp~~lve~f~~t-l~~~~~AD-lIL~VvDaS~~~~~e~l~~v~~iL~el~  306 (426)
T PRK11058        233 DPTLRRIDVADVGETVLADTVGFIRH----LPHDLVAAFKAT-LQETRQAT-LLLHVVDAADVRVQENIEAVNTVLEEID  306 (426)
T ss_pred             CCceEEEEeCCCCeEEEEecCccccc----CCHHHHHHHHHH-HHHhhcCC-EEEEEEeCCCccHHHHHHHHHHHHHHhc
Confidence            44443444444446789999999653    245566666665 45566666 4556666653 222211  234555565


Q ss_pred             CCCCeEEEEeccchhh
Q psy8958         136 PQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       136 P~G~RTIGVlTK~D~~  151 (294)
                      ..+...|.|+||+|+.
T Consensus       307 ~~~~pvIiV~NKiDL~  322 (426)
T PRK11058        307 AHEIPTLLVMNKIDML  322 (426)
T ss_pred             cCCCCEEEEEEcccCC
Confidence            5567899999999963

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=94.14  E-value=0.043  Score=47.35  Aligned_cols=39  Identities=23%  Similarity=0.282  Sum_probs=26.4

Q ss_pred             CCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958         108 PNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       108 p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                      .-.+|+.|.+|+. -.+.---.+|+-+   ....||||||.|+
T Consensus        63 dad~V~ll~dat~-~~~~~pP~fa~~f---~~pvIGVITK~Dl  101 (143)
T PF10662_consen   63 DADVVLLLQDATE-PRSVFPPGFASMF---NKPVIGVITKIDL  101 (143)
T ss_pred             hCCEEEEEecCCC-CCccCCchhhccc---CCCEEEEEECccC
Confidence            3457888888874 2333334566666   3689999999995

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=94.11  E-value=0.11  Score=45.01  Aligned_cols=64  Identities=20%  Similarity=0.288  Sum_probs=42.2

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS--NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans--~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ...+.|+|+||...             ...++..|++..+++|+++ ++......+  ..++.+.   ..+...|.|+||
T Consensus        64 ~~~~~l~DtpG~~~-------------~~~~~~~~~~~~d~~ilV~-d~~~~~~~~~~~~~~~~~---~~~~p~iiv~NK  126 (194)
T cd01891          64 DTKINIVDTPGHAD-------------FGGEVERVLSMVDGVLLLV-DASEGPMPQTRFVLKKAL---ELGLKPIVVINK  126 (194)
T ss_pred             CEEEEEEECCCcHH-------------HHHHHHHHHHhcCEEEEEE-ECCCCccHHHHHHHHHHH---HcCCCEEEEEEC
Confidence            35799999999532             3457788999998776654 444333221  2233333   346789999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       127 ~Dl  129 (194)
T cd01891         127 IDR  129 (194)
T ss_pred             CCC
Confidence            995

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04171 SelB SelB subfamily

Probab=94.03  E-value=0.32  Score=39.79  Aligned_cols=65  Identities=15%  Similarity=0.201  Sum_probs=38.4

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ...++++|+||.-             .....+..|+...+.+| .|++++.++.  ..+.+.+++...  ....|.|+||
T Consensus        50 ~~~~~~~DtpG~~-------------~~~~~~~~~~~~ad~ii-~V~d~~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK  113 (164)
T cd04171          50 GKRLGFIDVPGHE-------------KFIKNMLAGAGGIDLVL-LVVAADEGIMPQTREHLEILELLG--IKRGLVVLTK  113 (164)
T ss_pred             CcEEEEEECCChH-------------HHHHHHHhhhhcCCEEE-EEEECCCCccHhHHHHHHHHHHhC--CCcEEEEEEC
Confidence            3479999999952             11234446677777555 4556554332  223334444332  1368999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       114 ~Dl  116 (164)
T cd04171         114 ADL  116 (164)
T ss_pred             ccc
Confidence            995

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=93.79  E-value=0.24  Score=48.00  Aligned_cols=85  Identities=20%  Similarity=0.357  Sum_probs=49.4

Q ss_pred             cceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-c-chhc-HHHHhhhhcC
Q psy8958          59 EVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-D-AERS-NVTDLVSQMD  135 (294)
Q Consensus        59 ~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D-~ans-~al~lar~~D  135 (294)
                      .|..=.+.-++...++++|+||++..+..+.  .    +.....+|++..+ +++.|++++. + +.+- .+....+.++
T Consensus       194 ~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~--g----Lg~~flrhie~a~-vlI~ViD~s~~~s~e~~~~~~~EL~~~~  266 (335)
T PRK12299        194 HPNLGVVRVDDYKSFVIADIPGLIEGASEGA--G----LGHRFLKHIERTR-LLLHLVDIEAVDPVEDYKTIRNELEKYS  266 (335)
T ss_pred             CceEEEEEeCCCcEEEEEeCCCccCCCCccc--c----HHHHHHHHhhhcC-EEEEEEcCCCCCCHHHHHHHHHHHHHhh
Confidence            3333334444667799999999997664331  1    2223344666666 5555666553 3 2222 2334455666


Q ss_pred             C--CCCeEEEEeccchh
Q psy8958         136 P--QGKRTIFVLTKVSQ  150 (294)
Q Consensus       136 P--~G~RTIGVlTK~D~  150 (294)
                      +  .....|-|+||+|+
T Consensus       267 ~~L~~kp~IIV~NKiDL  283 (335)
T PRK12299        267 PELADKPRILVLNKIDL  283 (335)
T ss_pred             hhcccCCeEEEEECccc
Confidence            6  34678999999995

>cd01850 CDC_Septin CDC/Septin

Probab=93.71  E-value=0.24  Score=46.54  Aligned_cols=79  Identities=13%  Similarity=0.199  Sum_probs=43.2

Q ss_pred             CCceEEeCCCCcccCCCC-CChhHHHHHHHHhhhhc------------CC--CCceEEEeccCCCcchhcHHHHhhhhcC
Q psy8958          71 QRMVLVDLPGIISTSTQD-MASDTRDLIRQMTQTHM------------SN--PNAIILCIQDGSVDAERSNVTDLVSQMD  135 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~-q~~~~~~~i~~Lv~~Yi------------~~--p~sIILaV~~a~~D~ans~al~lar~~D  135 (294)
                      ..|++||+||+-...... +-+.+.+-|++--..|+            ..  ..+++..+.+....+...+ +++.+.+.
T Consensus        63 ~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D-~~~lk~l~  141 (276)
T cd01850          63 LKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD-IEFMKRLS  141 (276)
T ss_pred             EEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH-HHHHHHHh
Confidence            479999999986554321 12233333333333333            22  2234444444444554433 44455454


Q ss_pred             CCCCeEEEEeccchhh
Q psy8958         136 PQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       136 P~G~RTIGVlTK~D~~  151 (294)
                      . +.-.|.|+||+|+.
T Consensus       142 ~-~v~vi~VinK~D~l  156 (276)
T cd01850         142 K-RVNIIPVIAKADTL  156 (276)
T ss_pred             c-cCCEEEEEECCCcC
Confidence            3 57789999999974

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=93.31  E-value=0.28  Score=51.93  Aligned_cols=91  Identities=21%  Similarity=0.330  Sum_probs=58.0

Q ss_pred             CccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhh
Q psy8958          53 GKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVS  132 (294)
Q Consensus        53 ~~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar  132 (294)
                      ..+++.+.+...+.-.+ .++.|+|+||+...     .+.+...+.+.+..|+...+. ||.|+++...+...+ ..+++
T Consensus       306 ~pGvT~d~~~~~~~~~~-~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~aD~-iL~VvDa~~~~~~~d-~~i~~  377 (712)
T PRK09518        306 TPGVTRDRVSYDAEWAG-TDFKLVDTGGWEAD-----VEGIDSAIASQAQIAVSLADA-VVFVVDGQVGLTSTD-ERIVR  377 (712)
T ss_pred             CCCeeEEEEEEEEEECC-EEEEEEeCCCcCCC-----CccHHHHHHHHHHHHHHhCCE-EEEEEECCCCCCHHH-HHHHH
Confidence            34555566655554333 36999999997642     123566777788888888885 555666664333222 13344


Q ss_pred             hcCCCCCeEEEEeccchhh
Q psy8958         133 QMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       133 ~~DP~G~RTIGVlTK~D~~  151 (294)
                      .+...+.-.|.|++|.|+.
T Consensus       378 ~Lr~~~~pvIlV~NK~D~~  396 (712)
T PRK09518        378 MLRRAGKPVVLAVNKIDDQ  396 (712)
T ss_pred             HHHhcCCCEEEEEECcccc
Confidence            4445678999999999963

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=93.30  E-value=0.25  Score=42.56  Aligned_cols=81  Identities=15%  Similarity=0.237  Sum_probs=47.1

Q ss_pred             ccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-c-chhc--HHHHhh
Q psy8958          56 VSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-D-AERS--NVTDLV  131 (294)
Q Consensus        56 ~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D-~ans--~al~la  131 (294)
                      +....+.+.+.......|.++|+||.             +..+.+...|+++.+.+|+++ +++. + +...  ...++.
T Consensus        37 ~~~~~~~~~~~~~~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~-D~~~~~~~~~~~~~~~~i~  102 (183)
T cd04152          37 FNTEKIKVSLGNSKGITFHFWDVGGQ-------------EKLRPLWKSYTRCTDGIVFVV-DSVDVERMEEAKTELHKIT  102 (183)
T ss_pred             cceeEEEeeccCCCceEEEEEECCCc-------------HhHHHHHHHHhccCCEEEEEE-ECCCHHHHHHHHHHHHHHH
Confidence            34444445443335567999999993             223456778888877666555 4442 1 1111  111233


Q ss_pred             hhcCCCCCeEEEEeccchh
Q psy8958         132 SQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       132 r~~DP~G~RTIGVlTK~D~  150 (294)
                      +.....+.-.|.|+||.|+
T Consensus       103 ~~~~~~~~p~iiv~NK~D~  121 (183)
T cd04152         103 RFSENQGVPVLVLANKQDL  121 (183)
T ss_pred             hhhhcCCCcEEEEEECcCc
Confidence            3333456789999999995

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=93.13  E-value=0.29  Score=43.43  Aligned_cols=80  Identities=15%  Similarity=0.220  Sum_probs=46.3

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc--HHHHhh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS--NVTDLV  131 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans--~al~la  131 (294)
                      .+++-+.....+.. +-..+.|+|+||..            +...++ ..++...+.+| .|+++...+..+  ....++
T Consensus        61 rg~T~~~~~~~~~~-~~~~~~liDTpG~~------------~~~~~~-~~~~~~ad~~l-lVvD~~~~~~~~~~~~~~~~  125 (208)
T cd04166          61 QGITIDVAYRYFST-PKRKFIIADTPGHE------------QYTRNM-VTGASTADLAI-LLVDARKGVLEQTRRHSYIL  125 (208)
T ss_pred             CCcCeecceeEEec-CCceEEEEECCcHH------------HHHHHH-HHhhhhCCEEE-EEEECCCCccHhHHHHHHHH
Confidence            55666666666554 34578999999952            112223 34566667554 455565443322  234455


Q ss_pred             hhcCCCCCeEEEEeccchh
Q psy8958         132 SQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       132 r~~DP~G~RTIGVlTK~D~  150 (294)
                      +...  -.+.|.|+||.|+
T Consensus       126 ~~~~--~~~iIvviNK~D~  142 (208)
T cd04166         126 SLLG--IRHVVVAVNKMDL  142 (208)
T ss_pred             HHcC--CCcEEEEEEchhc
Confidence            5442  1347889999995

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=93.02  E-value=0.22  Score=45.40  Aligned_cols=67  Identities=12%  Similarity=0.206  Sum_probs=42.9

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      -..+.|+|+||...             ....+..++....++|| |+++...+..+ ...+.+.....|...|.|++|+|
T Consensus        72 ~~~i~iiDTPG~~~-------------f~~~~~~~l~~aD~~il-VvD~~~g~~~~-t~~~l~~~~~~~~p~ilviNKiD  136 (222)
T cd01885          72 EYLINLIDSPGHVD-------------FSSEVTAALRLCDGALV-VVDAVEGVCVQ-TETVLRQALKERVKPVLVINKID  136 (222)
T ss_pred             ceEEEEECCCCccc-------------cHHHHHHHHHhcCeeEE-EEECCCCCCHH-HHHHHHHHHHcCCCEEEEEECCC
Confidence            35689999999753             22356777888887766 44555433222 23333334345678999999999


Q ss_pred             hh
Q psy8958         150 QQ  151 (294)
Q Consensus       150 ~~  151 (294)
                      +.
T Consensus       137 ~~  138 (222)
T cd01885         137 RL  138 (222)
T ss_pred             cc
Confidence            63

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PLN03127 Elongation factor Tu; Provisional

Probab=92.91  E-value=0.23  Score=49.91  Aligned_cols=80  Identities=15%  Similarity=0.170  Sum_probs=50.2

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc--HHHHhh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS--NVTDLV  131 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans--~al~la  131 (294)
                      .+++-+...+....++ ..++|||+||+.            +.+.+|+..-. ... ++|.|++|+..+..|  +.+.++
T Consensus       108 rGiTi~~~~~~~~~~~-~~i~~iDtPGh~------------~f~~~~~~g~~-~aD-~allVVda~~g~~~qt~e~l~~~  172 (447)
T PLN03127        108 RGITIATAHVEYETAK-RHYAHVDCPGHA------------DYVKNMITGAA-QMD-GGILVVSAPDGPMPQTKEHILLA  172 (447)
T ss_pred             cCceeeeeEEEEcCCC-eEEEEEECCCcc------------chHHHHHHHHh-hCC-EEEEEEECCCCCchhHHHHHHHH
Confidence            5677777777766544 478999999973            13444544332 355 455577777555433  445555


Q ss_pred             hhcCCCCCe-EEEEeccchhh
Q psy8958         132 SQMDPQGKR-TIFVLTKVSQQ  151 (294)
Q Consensus       132 r~~DP~G~R-TIGVlTK~D~~  151 (294)
                      +..   |.. -|.|+||+|+.
T Consensus       173 ~~~---gip~iIvviNKiDlv  190 (447)
T PLN03127        173 RQV---GVPSLVVFLNKVDVV  190 (447)
T ss_pred             HHc---CCCeEEEEEEeeccC
Confidence            554   555 47899999964

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=92.88  E-value=0.19  Score=44.92  Aligned_cols=68  Identities=16%  Similarity=0.365  Sum_probs=36.0

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchh-cHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAER-SNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~an-s~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      .++.|||+||.....     .+..+.++++...-  +|.. ++.|++|+..... ..+.+..+.+.++|    .|+||.|
T Consensus        84 ~D~vlIDT~Gr~~~d-----~~~~~el~~~~~~~--~~~~-~~LVlsa~~~~~~~~~~~~~~~~~~~~~----lIlTKlD  151 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRD-----EELLEELKKLLEAL--NPDE-VHLVLSATMGQEDLEQALAFYEAFGIDG----LILTKLD  151 (196)
T ss_dssp             SSEEEEEE-SSSSTH-----HHHHHHHHHHHHHH--SSSE-EEEEEEGGGGGHHHHHHHHHHHHSSTCE----EEEESTT
T ss_pred             CCEEEEecCCcchhh-----HHHHHHHHHHhhhc--CCcc-ceEEEecccChHHHHHHHHHhhcccCce----EEEEeec
Confidence            579999999976422     23444444444433  3443 4455555543322 23344444444443    4799998


Q ss_pred             h
Q psy8958         150 Q  150 (294)
Q Consensus       150 ~  150 (294)
                      -
T Consensus       152 e  152 (196)
T PF00448_consen  152 E  152 (196)
T ss_dssp             S
T ss_pred             C
Confidence            3

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=92.84  E-value=0.37  Score=51.78  Aligned_cols=90  Identities=21%  Similarity=0.235  Sum_probs=51.8

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcC--CCCceEEEeccCCCcchhcHHHHhh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMS--NPNAIILCIQDGSVDAERSNVTDLV  131 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~--~p~sIILaV~~a~~D~ans~al~la  131 (294)
                      .+.+-+..+-.+..++ -.+.+|||||+........+....+.   +...|+.  .+. +++.|++|+. +..  .+.+.
T Consensus        34 pGvTve~k~g~~~~~~-~~i~lvDtPG~ysl~~~~~~~s~~E~---i~~~~l~~~~aD-~vI~VvDat~-ler--~l~l~  105 (772)
T PRK09554         34 AGVTVERKEGQFSTTD-HQVTLVDLPGTYSLTTISSQTSLDEQ---IACHYILSGDAD-LLINVVDASN-LER--NLYLT  105 (772)
T ss_pred             CCceEeeEEEEEEcCc-eEEEEEECCCccccccccccccHHHH---HHHHHHhccCCC-EEEEEecCCc-chh--hHHHH
Confidence            3344444444454443 46899999999765432221122233   3445544  455 4566777764 322  23344


Q ss_pred             hhcCCCCCeEEEEeccchhh
Q psy8958         132 SQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       132 r~~DP~G~RTIGVlTK~D~~  151 (294)
                      .++...|..+|.|++|.|..
T Consensus       106 ~ql~e~giPvIvVlNK~Dl~  125 (772)
T PRK09554        106 LQLLELGIPCIVALNMLDIA  125 (772)
T ss_pred             HHHHHcCCCEEEEEEchhhh
Confidence            45555688999999999964

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=92.79  E-value=0.2  Score=46.91  Aligned_cols=79  Identities=11%  Similarity=0.191  Sum_probs=47.7

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLV  131 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~la  131 (294)
                      .++|-+.-...+...+ ..++|||+||...             ...-+..++..-.++|+ |++|...+.  +...++++
T Consensus        48 rgiti~~~~~~~~~~~-~~i~liDTPG~~d-------------f~~~~~~~l~~aD~ail-VVDa~~g~~~~t~~~~~~~  112 (270)
T cd01886          48 RGITIQSAATTCFWKD-HRINIIDTPGHVD-------------FTIEVERSLRVLDGAVA-VFDAVAGVEPQTETVWRQA  112 (270)
T ss_pred             CCcCeeccEEEEEECC-EEEEEEECCCcHH-------------HHHHHHHHHHHcCEEEE-EEECCCCCCHHHHHHHHHH
Confidence            3455444444444433 4689999999653             11225567777776655 556655443  23444555


Q ss_pred             hhcCCCCCeEEEEeccchh
Q psy8958         132 SQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       132 r~~DP~G~RTIGVlTK~D~  150 (294)
                      ++   .|...|.|++|.|+
T Consensus       113 ~~---~~~p~ivviNK~D~  128 (270)
T cd01886         113 DR---YNVPRIAFVNKMDR  128 (270)
T ss_pred             HH---cCCCEEEEEECCCC
Confidence            44   46778999999996

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd00881 GTP_translation_factor GTP translation factor family

Probab=92.61  E-value=0.27  Score=41.14  Aligned_cols=65  Identities=17%  Similarity=0.262  Sum_probs=41.4

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~RTIGVlTK  147 (294)
                      -..++|+|+||...             ...+...|+...+.+|++ +++....  .....+..++.   .+.-.+.|+||
T Consensus        61 ~~~~~liDtpG~~~-------------~~~~~~~~~~~~d~~i~v-~d~~~~~~~~~~~~~~~~~~---~~~~i~iv~nK  123 (189)
T cd00881          61 DRRVNFIDTPGHED-------------FSSEVIRGLSVSDGAILV-VDANEGVQPQTREHLRIARE---GGLPIIVAINK  123 (189)
T ss_pred             CEEEEEEeCCCcHH-------------HHHHHHHHHHhcCEEEEE-EECCCCCcHHHHHHHHHHHH---CCCCeEEEEEC
Confidence            45799999999642             234566777778877765 4444321  22233444444   46778999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      .|+.
T Consensus       124 ~D~~  127 (189)
T cd00881         124 IDRV  127 (189)
T ss_pred             CCCc
Confidence            9953

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01898 Obg Obg subfamily

Probab=92.52  E-value=0.5  Score=39.15  Aligned_cols=73  Identities=25%  Similarity=0.443  Sum_probs=38.1

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--c-hh-cHHHHhhhhcCC--CCCeEEEE
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--A-ER-SNVTDLVSQMDP--QGKRTIFV  144 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~-an-s~al~lar~~DP--~G~RTIGV  144 (294)
                      ..+.|+|+||+.......+     ....... ++++.-+ +++.|++++.-  . .+ ....+..++..+  .+...|.|
T Consensus        48 ~~~~l~DtpG~~~~~~~~~-----~~~~~~~-~~~~~~d-~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv  120 (170)
T cd01898          48 RSFVVADIPGLIEGASEGK-----GLGHRFL-RHIERTR-LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVV  120 (170)
T ss_pred             CeEEEEecCcccCcccccC-----CchHHHH-HHHHhCC-EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEE
Confidence            5899999999864332211     1112222 2334455 44555555531  1 11 122233344433  35778999


Q ss_pred             eccchh
Q psy8958         145 LTKVSQ  150 (294)
Q Consensus       145 lTK~D~  150 (294)
                      +||.|+
T Consensus       121 ~NK~Dl  126 (170)
T cd01898         121 LNKIDL  126 (170)
T ss_pred             EEchhc
Confidence            999995

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK09866 hypothetical protein; Provisional

Probab=92.51  E-value=0.38  Score=51.08  Aligned_cols=72  Identities=15%  Similarity=0.278  Sum_probs=45.4

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC--cchhcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV--DAERSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~--D~ans~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ...++|||+||+.....        .....++.+.+..-. +||.|++++.  ......+++..++... ....|.|++|
T Consensus       229 ~~QIIFVDTPGIhk~~~--------~~L~k~M~eqL~eAD-vVLFVVDat~~~s~~DeeIlk~Lkk~~K-~~PVILVVNK  298 (741)
T PRK09866        229 PGQLTLLDTPGPNEAGQ--------PHLQKMLNQQLARAS-AVLAVLDYTQLKSISDEEVREAILAVGQ-SVPLYVLVNK  298 (741)
T ss_pred             cCCEEEEECCCCCCccc--------hHHHHHHHHHHhhCC-EEEEEEeCCCCCChhHHHHHHHHHhcCC-CCCEEEEEEc
Confidence            37899999999975322        112333334666666 7888888875  3344445555555432 1368999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      +|+.
T Consensus       299 IDl~  302 (741)
T PRK09866        299 FDQQ  302 (741)
T ss_pred             ccCC
Confidence            9963

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=92.48  E-value=0.59  Score=46.96  Aligned_cols=70  Identities=20%  Similarity=0.335  Sum_probs=40.5

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHH-HHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIR-QMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~-~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                      .+.++|+||+....      +..+... .+...|+++.+.+|+ |++++........  +...+...+...|.|+||.|+
T Consensus       252 ~v~l~DTaG~~~~~------~~ie~~gi~~~~~~~~~aD~il~-V~D~s~~~s~~~~--~l~~~~~~~~piIlV~NK~Dl  322 (442)
T TIGR00450       252 LIKLLDTAGIREHA------DFVERLGIEKSFKAIKQADLVIY-VLDASQPLTKDDF--LIIDLNKSKKPFILVLNKIDL  322 (442)
T ss_pred             EEEEeeCCCcccch------hHHHHHHHHHHHHHHhhCCEEEE-EEECCCCCChhHH--HHHHHhhCCCCEEEEEECccC
Confidence            47999999986421      2222221 345678888886655 4555432221221  233333345678999999996

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=92.35  E-value=0.54  Score=38.77  Aligned_cols=74  Identities=16%  Similarity=0.195  Sum_probs=46.0

Q ss_pred             EEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchh--cHHHHhhhhcCCCCCe
Q psy8958          63 MSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAER--SNVTDLVSQMDPQGKR  140 (294)
Q Consensus        63 leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~an--s~al~lar~~DP~G~R  140 (294)
                      +.+.+.....+.+.|+||.             +....|+..|+...+++|+++-..+.+--+  ...+...+...+ +.-
T Consensus        44 ~~~~~~~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p  109 (164)
T cd04101          44 VPVDTDNTVELFIFDSAGQ-------------ELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASK-HMP  109 (164)
T ss_pred             EEeCCCCEEEEEEEECCCH-------------HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCC
Confidence            3333445578999999992             344578888999888777666432221111  123344444443 477


Q ss_pred             EEEEeccchh
Q psy8958         141 TIFVLTKVSQ  150 (294)
Q Consensus       141 TIGVlTK~D~  150 (294)
                      .|.|.||.|+
T Consensus       110 ~ilv~nK~Dl  119 (164)
T cd04101         110 GVLVGNKMDL  119 (164)
T ss_pred             EEEEEECccc
Confidence            8999999995

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01889 SelB_euk SelB subfamily

Probab=92.10  E-value=0.47  Score=41.06  Aligned_cols=64  Identities=23%  Similarity=0.307  Sum_probs=36.3

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS--NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans--~al~lar~~DP~G~RTIGVlTK  147 (294)
                      -..++++|+||..            ..++.+. ..+.....+ +.|+++......+  +.+.+++..   +..-|.|+||
T Consensus        67 ~~~~~i~DtpG~~------------~~~~~~~-~~~~~~d~v-i~VvD~~~~~~~~~~~~~~~~~~~---~~~~iiv~NK  129 (192)
T cd01889          67 NLQITLVDCPGHA------------SLIRTII-GGAQIIDLM-LLVVDATKGIQTQTAECLVIGEIL---CKKLIVVLNK  129 (192)
T ss_pred             CceEEEEECCCcH------------HHHHHHH-HHHhhCCEE-EEEEECCCCccHHHHHHHHHHHHc---CCCEEEEEEC
Confidence            4679999999962            1122222 223334444 4566665433222  234444443   5678899999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       130 ~Dl  132 (192)
T cd01889         130 IDL  132 (192)
T ss_pred             ccc
Confidence            995

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04157 Arl6 Arl6 subfamily

Probab=92.05  E-value=0.43  Score=39.12  Aligned_cols=68  Identities=15%  Similarity=0.144  Sum_probs=41.4

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhh---cCCCCCeEEEE
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQ---MDPQGKRTIFV  144 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~---~DP~G~RTIGV  144 (294)
                      -..+.++|+||..             ..+.+...|++..+.+|+++-..+.+ +.. ...+....+   +...+...+.|
T Consensus        44 ~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv  110 (162)
T cd04157          44 NLSFTAFDMSGQG-------------KYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFF  110 (162)
T ss_pred             CEEEEEEECCCCH-------------hhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEE
Confidence            4568999999943             23456778888888777655443321 111 112222222   22346789999


Q ss_pred             eccchh
Q psy8958         145 LTKVSQ  150 (294)
Q Consensus       145 lTK~D~  150 (294)
                      +||.|+
T Consensus       111 ~NK~Dl  116 (162)
T cd04157         111 ANKMDL  116 (162)
T ss_pred             EeCccc
Confidence            999995

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PRK03003 GTP-binding protein Der; Reviewed

Probab=91.81  E-value=0.64  Score=46.75  Aligned_cols=74  Identities=14%  Similarity=0.243  Sum_probs=43.9

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHHHH-hhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIRQM-TQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~L-v~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                      .+.|+|+||+.+.......   .+....+ ...+++..+.+|| |++++.....++ ++++..+-..|.-.|.|++|+|+
T Consensus       260 ~~~l~DTaG~~~~~~~~~~---~e~~~~~~~~~~i~~ad~vil-V~Da~~~~s~~~-~~~~~~~~~~~~piIiV~NK~Dl  334 (472)
T PRK03003        260 TWRFVDTAGLRRRVKQASG---HEYYASLRTHAAIEAAEVAVV-LIDASEPISEQD-QRVLSMVIEAGRALVLAFNKWDL  334 (472)
T ss_pred             EEEEEECCCccccccccch---HHHHHHHHHHHHHhcCCEEEE-EEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECccc
Confidence            4689999998754432211   2233333 2346777775554 555554443333 34455554567889999999996

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=91.76  E-value=0.52  Score=42.20  Aligned_cols=80  Identities=19%  Similarity=0.267  Sum_probs=45.4

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-------cch--h
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-------DAE--R  124 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-------D~a--n  124 (294)
                      .++|-+.....+... -..++++|+||...            .+..+ ..++...+.+|+ |++|..       ...  .
T Consensus        61 rg~T~d~~~~~~~~~-~~~i~liDtpG~~~------------~~~~~-~~~~~~~d~~i~-VvDa~~~~~~~~~~~~~~~  125 (219)
T cd01883          61 RGVTIDVGLAKFETE-KYRFTILDAPGHRD------------FVPNM-ITGASQADVAVL-VVDARKGEFEAGFEKGGQT  125 (219)
T ss_pred             CccCeecceEEEeeC-CeEEEEEECCChHH------------HHHHH-HHHhhhCCEEEE-EEECCCCccccccccccch
Confidence            456666666665543 35799999999532            11222 245566665555 555553       221  2


Q ss_pred             cHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958         125 SNVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       125 s~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                      ...+.+++...  ..+-|.|++|.|+
T Consensus       126 ~~~~~~~~~~~--~~~iiivvNK~Dl  149 (219)
T cd01883         126 REHALLARTLG--VKQLIVAVNKMDD  149 (219)
T ss_pred             HHHHHHHHHcC--CCeEEEEEEcccc
Confidence            22334444332  2567889999995

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG1160 Predicted GTPases [General function prediction only]

Probab=91.75  E-value=0.78  Score=46.42  Aligned_cols=92  Identities=18%  Similarity=0.334  Sum_probs=67.2

Q ss_pred             CCCccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC--cchhcHHH
Q psy8958          51 RKGKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV--DAERSNVT  128 (294)
Q Consensus        51 g~~~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~--D~ans~al  128 (294)
                      .+-.|++.|.++=...--+.+ ..+||++|+.....    +.+..+++.-+..-|....+ ||.|+++..  ..+-..+.
T Consensus        32 ~D~pGvTRDr~y~~~~~~~~~-f~lIDTgGl~~~~~----~~l~~~i~~Qa~~Ai~eADv-ilfvVD~~~Git~~D~~ia  105 (444)
T COG1160          32 SDTPGVTRDRIYGDAEWLGRE-FILIDTGGLDDGDE----DELQELIREQALIAIEEADV-ILFVVDGREGITPADEEIA  105 (444)
T ss_pred             ecCCCCccCCccceeEEcCce-EEEEECCCCCcCCc----hHHHHHHHHHHHHHHHhCCE-EEEEEeCCCCCCHHHHHHH
Confidence            456788889888777666666 99999999986442    45778888888888888885 556666665  33344455


Q ss_pred             HhhhhcCCCCCeEEEEeccchhh
Q psy8958         129 DLVSQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       129 ~lar~~DP~G~RTIGVlTK~D~~  151 (294)
                      ++-|   +.+.-+|.|+.|+|..
T Consensus       106 ~~Lr---~~~kpviLvvNK~D~~  125 (444)
T COG1160         106 KILR---RSKKPVILVVNKIDNL  125 (444)
T ss_pred             HHHH---hcCCCEEEEEEcccCc
Confidence            5555   5668899999999964

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=91.70  E-value=0.45  Score=39.39  Aligned_cols=68  Identities=19%  Similarity=0.238  Sum_probs=41.7

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-ch--hcHHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AE--RSNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~a--ns~al~lar~~DP~G~RTIGVlT  146 (294)
                      ...+.++|+||..             ....+...|++..+.+|++|-+.+.+ +.  .....++.+.....+...|.|++
T Consensus        49 ~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~N  115 (167)
T cd04160          49 NARLKFWDLGGQE-------------SLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILAN  115 (167)
T ss_pred             CEEEEEEECCCCh-------------hhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence            4679999999953             23456778888888766655433221 11  11112233333335678999999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |+|+
T Consensus       116 K~D~  119 (167)
T cd04160         116 KQDL  119 (167)
T ss_pred             cccc
Confidence            9995

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=91.68  E-value=0.35  Score=39.72  Aligned_cols=67  Identities=16%  Similarity=0.150  Sum_probs=41.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cH-HHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SN-VTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~-al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.++|+||..             ....|...|++..+++|+++-..+.. +.. +. ...+.+..+..+.-.|.|.||
T Consensus        50 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK  116 (164)
T cd04145          50 AILDILDTAGQE-------------EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNK  116 (164)
T ss_pred             EEEEEEECCCCc-------------chhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeC
Confidence            568899999943             22457778888888877776543321 000 11 112333334445678999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      +|+
T Consensus       117 ~Dl  119 (164)
T cd04145         117 ADL  119 (164)
T ss_pred             ccc
Confidence            995

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=91.65  E-value=0.26  Score=38.13  Aligned_cols=67  Identities=16%  Similarity=0.165  Sum_probs=41.9

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHH----HhhhhcCCCCCeEEEEe
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVT----DLVSQMDPQGKRTIFVL  145 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al----~lar~~DP~G~RTIGVl  145 (294)
                      ...++++|+||......             ....++...+.+|+++ +++.........    .........+.-.|.|+
T Consensus        44 ~~~~~l~D~~g~~~~~~-------------~~~~~~~~~~~~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~  109 (157)
T cd00882          44 KVKLQIWDTAGQERFRS-------------LRRLYYRGADGIILVY-DVTDRESFENVKEWLLLILINKEGENIPIILVG  109 (157)
T ss_pred             EEEEEEEecCChHHHHh-------------HHHHHhcCCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEE
Confidence            46799999999664321             2266777777665555 445433333222    23344455578999999


Q ss_pred             ccchh
Q psy8958         146 TKVSQ  150 (294)
Q Consensus       146 TK~D~  150 (294)
                      ||.|+
T Consensus       110 nk~D~  114 (157)
T cd00882         110 NKIDL  114 (157)
T ss_pred             ecccc
Confidence            99985

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK15494 era GTPase Era; Provisional

Probab=91.55  E-value=0.93  Score=43.76  Aligned_cols=80  Identities=19%  Similarity=0.317  Sum_probs=44.2

Q ss_pred             eEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc--HHHHhhhhcCCCC
Q psy8958          61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS--NVTDLVSQMDPQG  138 (294)
Q Consensus        61 I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans--~al~lar~~DP~G  138 (294)
                      +.-.+..++. .+.|+|+||+.....     .+..........++..-..+|+ |+++...+...  ..++..+..   +
T Consensus        91 ~~~~~~~~~~-qi~~~DTpG~~~~~~-----~l~~~~~r~~~~~l~~aDvil~-VvD~~~s~~~~~~~il~~l~~~---~  160 (339)
T PRK15494         91 ITGIITLKDT-QVILYDTPGIFEPKG-----SLEKAMVRCAWSSLHSADLVLL-IIDSLKSFDDITHNILDKLRSL---N  160 (339)
T ss_pred             EEEEEEeCCe-EEEEEECCCcCCCcc-----cHHHHHHHHHHHHhhhCCEEEE-EEECCCCCCHHHHHHHHHHHhc---C
Confidence            3333333443 689999999864221     1222233334455677776655 45555433332  234444433   4


Q ss_pred             CeEEEEeccchh
Q psy8958         139 KRTIFVLTKVSQ  150 (294)
Q Consensus       139 ~RTIGVlTK~D~  150 (294)
                      ...|.|+||.|+
T Consensus       161 ~p~IlViNKiDl  172 (339)
T PRK15494        161 IVPIFLLNKIDI  172 (339)
T ss_pred             CCEEEEEEhhcC
Confidence            567899999996

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=91.54  E-value=0.68  Score=38.34  Aligned_cols=74  Identities=20%  Similarity=0.336  Sum_probs=36.8

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHH-hhhhcCCCCceEEEeccCCCcc----hh-cHHHHhhhhcCCCCCeEEE
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQM-TQTHMSNPNAIILCIQDGSVDA----ER-SNVTDLVSQMDPQGKRTIF  143 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~L-v~~Yi~~p~sIILaV~~a~~D~----an-s~al~lar~~DP~G~RTIG  143 (294)
                      ...++|+|+||+...+.... ..+...  .+ ...|+  ..+ +|.|++++...    +. ...++..+... .+...|.
T Consensus        46 ~~~~~i~Dt~G~~~~~~~~~-~~~~~~--~~~~~~~~--~d~-~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvil  118 (168)
T cd01897          46 YLRWQVIDTPGLLDRPLEER-NTIEMQ--AITALAHL--RAA-VLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIV  118 (168)
T ss_pred             ceEEEEEECCCcCCccccCC-chHHHH--HHHHHHhc--cCc-EEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEE
Confidence            35799999999854322111 111111  11 11222  344 45555555321    11 12333333332 2578999


Q ss_pred             Eeccchh
Q psy8958         144 VLTKVSQ  150 (294)
Q Consensus       144 VlTK~D~  150 (294)
                      |+||.|+
T Consensus       119 v~NK~Dl  125 (168)
T cd01897         119 VLNKIDL  125 (168)
T ss_pred             EEEcccc
Confidence            9999995

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd00154 Rab Rab family

Probab=91.51  E-value=0.36  Score=38.60  Aligned_cols=68  Identities=16%  Similarity=0.186  Sum_probs=42.1

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+++++|+||..             ....+...++++...+|+++-....+ +.. ...+......-..+.-.+.|+||
T Consensus        48 ~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  114 (159)
T cd00154          48 TVKLQIWDTAGQE-------------RFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNK  114 (159)
T ss_pred             EEEEEEEecCChH-------------HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEc
Confidence            3678999999962             23347788888888766655543321 111 12233444433345778999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       115 ~D~  117 (159)
T cd00154         115 IDL  117 (159)
T ss_pred             ccc
Confidence            995

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=91.49  E-value=0.72  Score=46.31  Aligned_cols=76  Identities=21%  Similarity=0.351  Sum_probs=43.0

Q ss_pred             CCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC----cchh--cHHHHhhhhcCC--CCC
Q psy8958          68 PGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV----DAER--SNVTDLVSQMDP--QGK  139 (294)
Q Consensus        68 P~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~----D~an--s~al~lar~~DP--~G~  139 (294)
                      ++-..++|+|+||++..+..+.     ..... ..++++.-+ +++.|++++.    |...  ..+.+..+.+++  .+.
T Consensus       203 ~~~~~~~laD~PGliega~~~~-----gLg~~-fLrhier~~-llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~k  275 (424)
T PRK12297        203 DDGRSFVMADIPGLIEGASEGV-----GLGHQ-FLRHIERTR-VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLER  275 (424)
T ss_pred             eCCceEEEEECCCCcccccccc-----hHHHH-HHHHHhhCC-EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCC
Confidence            3356799999999987554321     11111 223344455 4555555542    2211  123344555666  367


Q ss_pred             eEEEEeccchh
Q psy8958         140 RTIFVLTKVSQ  150 (294)
Q Consensus       140 RTIGVlTK~D~  150 (294)
                      ..|.|+||+|+
T Consensus       276 P~IVV~NK~DL  286 (424)
T PRK12297        276 PQIVVANKMDL  286 (424)
T ss_pred             cEEEEEeCCCC
Confidence            88999999995

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=91.44  E-value=0.57  Score=41.38  Aligned_cols=64  Identities=19%  Similarity=0.211  Sum_probs=35.5

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-c--chhcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-D--AERSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D--~ans~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..++|+|+||.         +   ..+. -+..++.+-+.++| |+++.. .  ..+...+..++...  ....|.|+||
T Consensus        83 ~~i~~iDtPG~---------~---~~~~-~~~~~~~~~D~~ll-Vvd~~~~~~~~~t~~~l~~~~~~~--~~~iiivvNK  146 (203)
T cd01888          83 RHVSFVDCPGH---------E---ILMA-TMLSGAAVMDGALL-LIAANEPCPQPQTSEHLAALEIMG--LKHIIIVQNK  146 (203)
T ss_pred             cEEEEEECCCh---------H---HHHH-HHHHhhhcCCEEEE-EEECCCCCCCcchHHHHHHHHHcC--CCcEEEEEEc
Confidence            56899999992         1   1222 23344455565544 444443 2  22334455554332  2357889999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       147 ~Dl  149 (203)
T cd01888         147 IDL  149 (203)
T ss_pred             hhc
Confidence            995

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=91.21  E-value=0.87  Score=48.30  Aligned_cols=76  Identities=14%  Similarity=0.230  Sum_probs=45.7

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHH-hhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQM-TQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~L-v~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      ..++|+|+||+.+......   ..+....+ ...+++..+.+| .|++++.....++ +++++.+...|.-.|.|+||+|
T Consensus       498 ~~~~liDTaG~~~~~~~~~---~~e~~~~~r~~~~i~~advvi-lViDat~~~s~~~-~~i~~~~~~~~~piIiV~NK~D  572 (712)
T PRK09518        498 EDWLFIDTAGIKRRQHKLT---GAEYYSSLRTQAAIERSELAL-FLFDASQPISEQD-LKVMSMAVDAGRALVLVFNKWD  572 (712)
T ss_pred             CEEEEEECCCcccCcccch---hHHHHHHHHHHHHhhcCCEEE-EEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEEchh
Confidence            3578999999875433211   11222222 245667777554 5667765544443 3455555556788999999999


Q ss_pred             hh
Q psy8958         150 QQ  151 (294)
Q Consensus       150 ~~  151 (294)
                      +.
T Consensus       573 L~  574 (712)
T PRK09518        573 LM  574 (712)
T ss_pred             cC
Confidence            63

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=91.13  E-value=0.55  Score=47.30  Aligned_cols=70  Identities=16%  Similarity=0.247  Sum_probs=43.4

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      -.++.|||+||..+.     .+........+..  ..+|..+ +.|++|..   .|++...|+.+.....-|-.|+||.|
T Consensus       182 ~~DvViIDTaGr~~~-----d~~lm~El~~i~~--~~~p~e~-lLVlda~~---Gq~a~~~a~~F~~~~~~~g~IlTKlD  250 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQ-----EDSLFEEMLQVAE--AIQPDNI-IFVMDGSI---GQAAEAQAKAFKDSVDVGSVIITKLD  250 (429)
T ss_pred             CCCEEEEECCCCCcc-----hHHHHHHHHHHhh--hcCCcEE-EEEecccc---ChhHHHHHHHHHhccCCcEEEEECcc
Confidence            468999999995431     2334444444432  2356655 45555543   36667777777644456778999999


Q ss_pred             h
Q psy8958         150 Q  150 (294)
Q Consensus       150 ~  150 (294)
                      -
T Consensus       251 ~  251 (429)
T TIGR01425       251 G  251 (429)
T ss_pred             C
Confidence            4

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG1159 Era GTPase [General function prediction only]

Probab=90.93  E-value=0.94  Score=43.62  Aligned_cols=73  Identities=16%  Similarity=0.343  Sum_probs=49.3

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchh--cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAER--SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~an--s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      -...++||+||+.+...     .+.+..-+.+.+-++.-. +||.|++|+..+..  ..+++..+.   .....|.+++|
T Consensus        53 ~~QiIfvDTPGih~pk~-----~l~~~m~~~a~~sl~dvD-lilfvvd~~~~~~~~d~~il~~lk~---~~~pvil~iNK  123 (298)
T COG1159          53 NAQIIFVDTPGIHKPKH-----ALGELMNKAARSALKDVD-LILFVVDADEGWGPGDEFILEQLKK---TKTPVILVVNK  123 (298)
T ss_pred             CceEEEEeCCCCCCcch-----HHHHHHHHHHHHHhccCc-EEEEEEeccccCCccHHHHHHHHhh---cCCCeEEEEEc
Confidence            56799999999997632     334444445555556555 77888888865543  344455554   45789999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      .|+.
T Consensus       124 ID~~  127 (298)
T COG1159         124 IDKV  127 (298)
T ss_pred             cccC
Confidence            9964

>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles

Probab=90.74  E-value=0.15  Score=47.96  Aligned_cols=79  Identities=20%  Similarity=0.077  Sum_probs=58.0

Q ss_pred             cCCcccc-------ccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhh---cC-CChHHHHHHHcCC
Q psy8958         170 DLGSVMD-------LQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEE---NH-SDPQRIKKILAGK  238 (294)
Q Consensus       170 ~LG~~~d-------~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~---~~-~~~~~~~~il~~~  238 (294)
                      +|||+..       ...+.+..++.+.|+.||++.||-..+..+.++.+|...|+-=|++.   .+ ....++.+.|...
T Consensus        13 klGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~   92 (295)
T PF01031_consen   13 KLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSLKSEIQKKLQEA   92 (295)
T ss_dssp             TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            8898853       24567889999999999987654444889999999997777666553   11 1346778888888


Q ss_pred             cccCCCCCeE
Q psy8958         239 LFPMKALGYF  248 (294)
Q Consensus       239 ~~~L~~lG~~  248 (294)
                      ...|++||-.
T Consensus        93 ~~eL~~lG~~  102 (295)
T PF01031_consen   93 EKELKRLGPP  102 (295)
T ss_dssp             HHHHHTHHHC
T ss_pred             HHHHHHhCCC
Confidence            8899887775

At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=90.73  E-value=0.51  Score=45.46  Aligned_cols=74  Identities=14%  Similarity=0.187  Sum_probs=43.0

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHH---HhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEe
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQ---MTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVL  145 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~---Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVl  145 (294)
                      .-.++.|||+||......     ...+..+.   ++...+.....-++.|++|+.   .+.++..|+.+...-.=+-.|+
T Consensus       195 ~~~D~ViIDTaGr~~~~~-----~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~---g~~~~~~a~~f~~~~~~~giIl  266 (318)
T PRK10416        195 RGIDVLIIDTAGRLHNKT-----NLMEELKKIKRVIKKADPDAPHEVLLVLDATT---GQNALSQAKAFHEAVGLTGIIL  266 (318)
T ss_pred             CCCCEEEEeCCCCCcCCH-----HHHHHHHHHHHHHhhhcCCCCceEEEEEECCC---ChHHHHHHHHHHhhCCCCEEEE
Confidence            345899999999865432     22333333   333433333334566777663   3555555666543334456799


Q ss_pred             ccchh
Q psy8958         146 TKVSQ  150 (294)
Q Consensus       146 TK~D~  150 (294)
                      ||.|.
T Consensus       267 TKlD~  271 (318)
T PRK10416        267 TKLDG  271 (318)
T ss_pred             ECCCC
Confidence            99984

>cd04151 Arl1 Arl1 subfamily

Probab=90.49  E-value=0.65  Score=38.42  Aligned_cols=67  Identities=21%  Similarity=0.292  Sum_probs=41.5

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-ch--hcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AE--RSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~a--ns~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||...             .+.+...|++..+.+|+++-..+.+ +.  ......+.+.....+.-.|.|+||
T Consensus        43 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK  109 (158)
T cd04151          43 LKFQVWDLGGQTS-------------IRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANK  109 (158)
T ss_pred             EEEEEEECCCCHH-------------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeC
Confidence            4689999999632             3457778899888777666433211 11  122223333333345678999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       110 ~Dl  112 (158)
T cd04151         110 QDM  112 (158)
T ss_pred             CCC
Confidence            995

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=90.47  E-value=0.8  Score=38.01  Aligned_cols=67  Identities=12%  Similarity=0.181  Sum_probs=42.5

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-ch-hcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AE-RSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~a-ns~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||.             +....+...|+++.+++|+++-..+.+ +. -...+...+++...+.--|.|.||.
T Consensus        51 ~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~  117 (166)
T cd01869          51 IKLQIWDTAGQ-------------ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC  117 (166)
T ss_pred             EEEEEEECCCc-------------HhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECh
Confidence            46889999992             223557778888888888776554322 11 1123334444444456778999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       118 Dl  119 (166)
T cd01869         118 DL  119 (166)
T ss_pred             hc
Confidence            95

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04168 TetM_like Tet(M)-like subfamily

Probab=90.43  E-value=6.8  Score=35.86  Aligned_cols=63  Identities=19%  Similarity=0.279  Sum_probs=41.1

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||....             ...+..|++.-+.+|++| ++...+.  ...+++++++   .|...|.|++|.
T Consensus        64 ~~i~liDTPG~~~f-------------~~~~~~~l~~aD~~IlVv-d~~~g~~~~~~~~~~~~~~---~~~P~iivvNK~  126 (237)
T cd04168          64 TKVNLIDTPGHMDF-------------IAEVERSLSVLDGAILVI-SAVEGVQAQTRILWRLLRK---LNIPTIIFVNKI  126 (237)
T ss_pred             EEEEEEeCCCccch-------------HHHHHHHHHHhCeEEEEE-eCCCCCCHHHHHHHHHHHH---cCCCEEEEEECc
Confidence            46899999997531             223556777777666655 4444433  2344555554   467889999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       127 D~  128 (237)
T cd04168         127 DR  128 (237)
T ss_pred             cc
Confidence            95

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=90.34  E-value=0.88  Score=43.93  Aligned_cols=76  Identities=20%  Similarity=0.332  Sum_probs=42.7

Q ss_pred             CCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc----ch-h-cHHHHhhhhcCC--CCC
Q psy8958          68 PGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD----AE-R-SNVTDLVSQMDP--QGK  139 (294)
Q Consensus        68 P~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D----~a-n-s~al~lar~~DP--~G~  139 (294)
                      .+...++|+|+||++..+..+.  .    +.....++++.-+ ++|.|++++..    .. + +...+....+++  ...
T Consensus       202 ~~~~~~~i~D~PGli~~a~~~~--g----Lg~~flrhierad-~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~k  274 (329)
T TIGR02729       202 DDGRSFVIADIPGLIEGASEGA--G----LGHRFLKHIERTR-VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEK  274 (329)
T ss_pred             CCceEEEEEeCCCcccCCcccc--c----HHHHHHHHHHhhC-EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccC
Confidence            3446799999999987654321  1    1222334455555 55666666531    11 1 112223344544  346


Q ss_pred             eEEEEeccchh
Q psy8958         140 RTIFVLTKVSQ  150 (294)
Q Consensus       140 RTIGVlTK~D~  150 (294)
                      ..|-|+||+|+
T Consensus       275 p~IIV~NK~DL  285 (329)
T TIGR02729       275 PRIVVLNKIDL  285 (329)
T ss_pred             CEEEEEeCccC
Confidence            78999999995

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01884 EF_Tu EF-Tu subfamily

Probab=90.17  E-value=1.1  Score=39.77  Aligned_cols=79  Identities=16%  Similarity=0.216  Sum_probs=44.5

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc--HHHHhh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS--NVTDLV  131 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans--~al~la  131 (294)
                      .++|-+...+.... +-..++|||+||..            +.+..+.. -+...+++| .|++|...+..+  ..+.++
T Consensus        49 rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~------------~~~~~~~~-~~~~~D~~i-lVvda~~g~~~~~~~~~~~~  113 (195)
T cd01884          49 RGITINTAHVEYET-ANRHYAHVDCPGHA------------DYIKNMIT-GAAQMDGAI-LVVSATDGPMPQTREHLLLA  113 (195)
T ss_pred             cCccEEeeeeEecC-CCeEEEEEECcCHH------------HHHHHHHH-HhhhCCEEE-EEEECCCCCcHHHHHHHHHH
Confidence            34454444444433 34578999999974            22333322 233455444 466666554433  345555


Q ss_pred             hhcCCCCC-eEEEEeccchh
Q psy8958         132 SQMDPQGK-RTIFVLTKVSQ  150 (294)
Q Consensus       132 r~~DP~G~-RTIGVlTK~D~  150 (294)
                      .+.   |. +-|.|+||.|+
T Consensus       114 ~~~---~~~~iIvviNK~D~  130 (195)
T cd01884         114 RQV---GVPYIVVFLNKADM  130 (195)
T ss_pred             HHc---CCCcEEEEEeCCCC
Confidence            554   54 46799999995

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04167 Snu114p Snu114p subfamily

Probab=90.04  E-value=0.77  Score=40.69  Aligned_cols=81  Identities=14%  Similarity=0.252  Sum_probs=47.5

Q ss_pred             ccccceEEEEeC--CCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhh
Q psy8958          56 VSNEVISMSVKG--PGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQ  133 (294)
Q Consensus        56 ~S~~~I~leI~g--P~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~  133 (294)
                      +....+.+...+  .....++++|+||....             ...+..|+...+++|++|- +...... ...+..+.
T Consensus        54 i~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f-------------~~~~~~~~~~aD~~llVvD-~~~~~~~-~~~~~~~~  118 (213)
T cd04167          54 IKSSPISLVLPDSKGKSYLFNIIDTPGHVNF-------------MDEVAAALRLSDGVVLVVD-VVEGVTS-NTERLIRH  118 (213)
T ss_pred             ccccceeEEEEcCCCCEEEEEEEECCCCcch-------------HHHHHHHHHhCCEEEEEEE-CCCCCCH-HHHHHHHH
Confidence            334455555543  22357999999996531             2446677788887766664 4332221 12222233


Q ss_pred             cCCCCCeEEEEeccchhh
Q psy8958         134 MDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       134 ~DP~G~RTIGVlTK~D~~  151 (294)
                      ....+.-.|.|+||.|+.
T Consensus       119 ~~~~~~p~iiviNK~D~~  136 (213)
T cd04167         119 AILEGLPIVLVINKIDRL  136 (213)
T ss_pred             HHHcCCCEEEEEECcccC
Confidence            333456789999999953

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01864 Rab19 Rab19 subfamily

Probab=89.88  E-value=1.1  Score=37.19  Aligned_cols=67  Identities=15%  Similarity=0.181  Sum_probs=42.9

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..|.|+|+||-             +....+...|++..+.+++++-..+.. +.. ...+...+...+.+.--|.|.||.
T Consensus        52 ~~l~i~D~~G~-------------~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~  118 (165)
T cd01864          52 VKLQIWDTAGQ-------------ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKC  118 (165)
T ss_pred             EEEEEEECCCh-------------HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECc
Confidence            47899999992             224567788888888777765544321 111 223444444444455679999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       119 Dl  120 (165)
T cd01864         119 DL  120 (165)
T ss_pred             cc
Confidence            95

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=89.82  E-value=0.58  Score=44.01  Aligned_cols=73  Identities=16%  Similarity=0.213  Sum_probs=40.4

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHH---HhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQ---MTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~---Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlT  146 (294)
                      -.++.|||+||....     .....+.++.   ++.+.+.....-++.|++|+.   .++++..++.+-..-.-+=.|+|
T Consensus       154 ~~D~ViIDT~G~~~~-----d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~---~~~~~~~~~~f~~~~~~~g~IlT  225 (272)
T TIGR00064       154 NIDVVLIDTAGRLQN-----KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT---GQNALEQAKVFNEAVGLTGIILT  225 (272)
T ss_pred             CCCEEEEeCCCCCcc-----hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---CHHHHHHHHHHHhhCCCCEEEEE
Confidence            368999999998652     1233333333   444444443334455666653   34444444444322234567999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |+|.
T Consensus       226 KlDe  229 (272)
T TIGR00064       226 KLDG  229 (272)
T ss_pred             ccCC
Confidence            9984

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG3596 Predicted GTPase [General function prediction only]

Probab=89.70  E-value=0.5  Score=45.27  Aligned_cols=78  Identities=21%  Similarity=0.302  Sum_probs=52.5

Q ss_pred             CCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCC--CCeEEEE
Q psy8958          67 GPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQ--GKRTIFV  144 (294)
Q Consensus        67 gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~--G~RTIGV  144 (294)
                      .-+.-+|+|.|+||+=.....|      ..-+.++..|+.+-. ++|.+.+|. |-+-+.-.++++.+=-.  +.|+|.|
T Consensus        83 ~~~~~~l~lwDtPG~gdg~~~D------~~~r~~~~d~l~~~D-LvL~l~~~~-draL~~d~~f~~dVi~~~~~~~~i~~  154 (296)
T COG3596          83 SYDGENLVLWDTPGLGDGKDKD------AEHRQLYRDYLPKLD-LVLWLIKAD-DRALGTDEDFLRDVIILGLDKRVLFV  154 (296)
T ss_pred             hccccceEEecCCCcccchhhh------HHHHHHHHHHhhhcc-EEEEeccCC-CccccCCHHHHHHHHHhccCceeEEE
Confidence            3345899999999987655443      334567777777766 889999987 33333333444433211  2899999


Q ss_pred             eccchhhh
Q psy8958         145 LTKVSQQL  152 (294)
Q Consensus       145 lTK~D~~~  152 (294)
                      +|.+|+..
T Consensus       155 VtQ~D~a~  162 (296)
T COG3596         155 VTQADRAE  162 (296)
T ss_pred             Eehhhhhc
Confidence            99999763

>cd01868 Rab11_like Rab11-like

Probab=89.57  E-value=1.6  Score=36.00  Aligned_cols=67  Identities=10%  Similarity=-0.002  Sum_probs=43.2

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.++|+||..             ....+...|+.....+|+++-..+.+-.  -...++..++..+.+.-.+.|.||.
T Consensus        52 ~~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~  118 (165)
T cd01868          52 IKAQIWDTAGQE-------------RYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKS  118 (165)
T ss_pred             EEEEEEeCCChH-------------HHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence            579999999942             2445677888877777666554432111  1123445556666667788999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       119 Dl  120 (165)
T cd01868         119 DL  120 (165)
T ss_pred             cc
Confidence            95

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PRK14974 cell division protein FtsY; Provisional

Probab=89.57  E-value=0.83  Score=44.49  Aligned_cols=69  Identities=19%  Similarity=0.357  Sum_probs=44.8

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                      .++.|||+||..+..     .+..+..+.+++  ..+|..++ .|++|..   .++++..|+.+...-.=+-.|+||.|.
T Consensus       223 ~DvVLIDTaGr~~~~-----~~lm~eL~~i~~--~~~pd~~i-LVl~a~~---g~d~~~~a~~f~~~~~~~giIlTKlD~  291 (336)
T PRK14974        223 IDVVLIDTAGRMHTD-----ANLMDELKKIVR--VTKPDLVI-FVGDALA---GNDAVEQAREFNEAVGIDGVILTKVDA  291 (336)
T ss_pred             CCEEEEECCCccCCc-----HHHHHHHHHHHH--hhCCceEE-Eeecccc---chhHHHHHHHHHhcCCCCEEEEeeecC
Confidence            479999999987632     345555655543  23566555 4556643   467777777765432336679999984

>cd04112 Rab26 Rab26 subfamily

Probab=89.33  E-value=1.1  Score=38.78  Aligned_cols=67  Identities=10%  Similarity=0.136  Sum_probs=43.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-ch-hcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AE-RSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~a-ns~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||-             +....+...|++..+.+|+++-..+.+ +. -...+...++..+.+.-.|.|.+|.
T Consensus        50 ~~~~i~Dt~G~-------------~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~  116 (191)
T cd04112          50 VKLQIWDTAGQ-------------ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKA  116 (191)
T ss_pred             EEEEEEeCCCc-------------HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcc
Confidence            46889999992             233456677888888766655433321 11 1223456666777777788999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       117 Dl  118 (191)
T cd04112         117 DM  118 (191)
T ss_pred             cc
Confidence            96

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=89.26  E-value=1.2  Score=46.60  Aligned_cols=71  Identities=13%  Similarity=0.182  Sum_probs=43.0

Q ss_pred             EeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchh--cHHHHhhhhcCCCCCeEE
Q psy8958          65 VKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAER--SNVTDLVSQMDPQGKRTI  142 (294)
Q Consensus        65 I~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~an--s~al~lar~~DP~G~RTI  142 (294)
                      +.-|+-..++|||+||.            ...+++|+ .++..-+.++| |++|+..+..  .+.+.+++...  ...-|
T Consensus        45 ~~~~~g~~i~~IDtPGh------------e~fi~~m~-~g~~~~D~~lL-VVda~eg~~~qT~ehl~il~~lg--i~~iI  108 (614)
T PRK10512         45 WPQPDGRVLGFIDVPGH------------EKFLSNML-AGVGGIDHALL-VVACDDGVMAQTREHLAILQLTG--NPMLT  108 (614)
T ss_pred             EecCCCcEEEEEECCCH------------HHHHHHHH-HHhhcCCEEEE-EEECCCCCcHHHHHHHHHHHHcC--CCeEE
Confidence            33444556899999995            23445554 44566665555 5566654433  34455665553  23447


Q ss_pred             EEeccchhh
Q psy8958         143 FVLTKVSQQ  151 (294)
Q Consensus       143 GVlTK~D~~  151 (294)
                      -|+||+|+.
T Consensus       109 VVlNKiDlv  117 (614)
T PRK10512        109 VALTKADRV  117 (614)
T ss_pred             EEEECCccC
Confidence            899999963

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=89.22  E-value=0.89  Score=37.33  Aligned_cols=68  Identities=18%  Similarity=0.279  Sum_probs=42.4

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-ch--hcHHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AE--RSNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~a--ns~al~lar~~DP~G~RTIGVlT  146 (294)
                      ...+.++|+||...             .+.+...|++...++|+++-..+.+ +.  .+....+.+.....+...+.|.|
T Consensus        42 ~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n  108 (158)
T cd00878          42 NVSFTVWDVGGQDK-------------IRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFAN  108 (158)
T ss_pred             CEEEEEEECCCChh-------------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEee
Confidence            46799999999432             1446667888888777654444321 11  11222333444456788999999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |+|+
T Consensus       109 K~D~  112 (158)
T cd00878         109 KQDL  112 (158)
T ss_pred             ccCC
Confidence            9995

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01893 Miro1 Miro1 subfamily

Probab=89.21  E-value=1.1  Score=37.44  Aligned_cols=74  Identities=19%  Similarity=0.139  Sum_probs=44.0

Q ss_pred             eEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chh--cHHHHhhhhcCC
Q psy8958          61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AER--SNVTDLVSQMDP  136 (294)
Q Consensus        61 I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~an--s~al~lar~~DP  136 (294)
                      +.+.+.+.. ..+.++|+||...             -+.+...|++..+.+||++ +++..  +.+  .......++..+
T Consensus        38 ~~~~~~~~~-~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~~ilv~-d~~~~~s~~~~~~~~~~~i~~~~~  102 (166)
T cd01893          38 IPADVTPER-VPTTIVDTSSRPQ-------------DRANLAAEIRKANVICLVY-SVDRPSTLERIRTKWLPLIRRLGV  102 (166)
T ss_pred             eeeeecCCe-EEEEEEeCCCchh-------------hhHHHhhhcccCCEEEEEE-ECCCHHHHHHHHHHHHHHHHHhCC
Confidence            334444444 4789999999532             1234556777778766655 44431  222  123345555544


Q ss_pred             CCCeEEEEeccchh
Q psy8958         137 QGKRTIFVLTKVSQ  150 (294)
Q Consensus       137 ~G~RTIGVlTK~D~  150 (294)
                       +.-.|.|.||+|+
T Consensus       103 -~~pviiv~nK~Dl  115 (166)
T cd01893         103 -KVPIILVGNKSDL  115 (166)
T ss_pred             -CCCEEEEEEchhc
Confidence             5778999999995

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>TIGR01393 lepA GTP-binding protein LepA

Probab=89.00  E-value=0.93  Score=47.31  Aligned_cols=79  Identities=16%  Similarity=0.249  Sum_probs=49.5

Q ss_pred             cccccceEEEEe--CCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcH--HHHh
Q psy8958          55 TVSNEVISMSVK--GPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSN--VTDL  130 (294)
Q Consensus        55 ~~S~~~I~leI~--gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~--al~l  130 (294)
                      ++....+.+...  +.....|.|+|+||...             ...++..|++.-+.+|| |++++.....+.  .+..
T Consensus        52 Ti~~~~v~~~~~~~~g~~~~l~liDTPG~~d-------------F~~~v~~~l~~aD~aIL-VvDat~g~~~qt~~~~~~  117 (595)
T TIGR01393        52 TIKAQAVRLNYKAKDGETYVLNLIDTPGHVD-------------FSYEVSRSLAACEGALL-LVDAAQGIEAQTLANVYL  117 (595)
T ss_pred             CeeeeEEEEEEEcCCCCEEEEEEEECCCcHH-------------HHHHHHHHHHhCCEEEE-EecCCCCCCHhHHHHHHH
Confidence            344455555554  23346799999999753             23456778888886665 556665443333  3334


Q ss_pred             hhhcCCCCCeEEEEeccchh
Q psy8958         131 VSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       131 ar~~DP~G~RTIGVlTK~D~  150 (294)
                      +.+   .+...|.|+||.|+
T Consensus       118 ~~~---~~ipiIiViNKiDl  134 (595)
T TIGR01393       118 ALE---NDLEIIPVINKIDL  134 (595)
T ss_pred             HHH---cCCCEEEEEECcCC
Confidence            443   34668999999996

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=88.97  E-value=1.1  Score=44.39  Aligned_cols=81  Identities=15%  Similarity=0.205  Sum_probs=47.9

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC--cchhc--HHHH
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV--DAERS--NVTD  129 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~--D~ans--~al~  129 (294)
                      .+++-+.....+...+ ..++|+|+||...            ..++|+ ..+...+.+ |.|++++.  .+..+  ..+.
T Consensus        68 rG~T~d~~~~~~~~~~-~~i~liDtpG~~~------------~~~~~~-~~~~~aD~~-ilVvDa~~~~~~~~~~~~~~~  132 (425)
T PRK12317         68 RGVTIDLAHKKFETDK-YYFTIVDCPGHRD------------FVKNMI-TGASQADAA-VLVVAADDAGGVMPQTREHVF  132 (425)
T ss_pred             cCccceeeeEEEecCC-eEEEEEECCCccc------------chhhHh-hchhcCCEE-EEEEEcccCCCCCcchHHHHH
Confidence            5667777666666544 4799999999521            122232 234556655 45666664  44333  3445


Q ss_pred             hhhhcCCCCCeEEEEeccchhh
Q psy8958         130 LVSQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       130 lar~~DP~G~RTIGVlTK~D~~  151 (294)
                      +++....  .+-|.|+||.|+.
T Consensus       133 ~~~~~~~--~~iivviNK~Dl~  152 (425)
T PRK12317        133 LARTLGI--NQLIVAINKMDAV  152 (425)
T ss_pred             HHHHcCC--CeEEEEEEccccc
Confidence            5554421  3578899999964

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=88.94  E-value=1.2  Score=46.56  Aligned_cols=69  Identities=26%  Similarity=0.371  Sum_probs=43.1

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcC--CCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMS--NPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~--~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      ++.++|+||.......  +.  .   +.+.+.|+.  ... +++.|++++. +.  ..+.+..++...+...|-|+||.|
T Consensus        42 ~i~lvDtPG~~~~~~~--s~--~---e~v~~~~l~~~~aD-vvI~VvDat~-le--r~l~l~~ql~~~~~PiIIVlNK~D  110 (591)
T TIGR00437        42 DIEIVDLPGIYSLTTF--SL--E---EEVARDYLLNEKPD-LVVNVVDASN-LE--RNLYLTLQLLELGIPMILALNLVD  110 (591)
T ss_pred             EEEEEECCCccccCcc--ch--H---HHHHHHHHhhcCCC-EEEEEecCCc-ch--hhHHHHHHHHhcCCCEEEEEehhH
Confidence            5899999998764332  11  1   133444544  344 5666777664 32  234555555556789999999999


Q ss_pred             hh
Q psy8958         150 QQ  151 (294)
Q Consensus       150 ~~  151 (294)
                      +.
T Consensus       111 l~  112 (591)
T TIGR00437       111 EA  112 (591)
T ss_pred             HH
Confidence            64

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd04154 Arl2 Arl2 subfamily

Probab=88.79  E-value=1.1  Score=37.89  Aligned_cols=68  Identities=12%  Similarity=0.197  Sum_probs=41.7

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlT  146 (294)
                      ...|.++|+||..             ..+.+...|+...+++|+++-..+.+ +.+.  ....+.+.....+...|.|+|
T Consensus        57 ~~~l~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~n  123 (173)
T cd04154          57 GYKLNIWDVGGQK-------------TLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILAN  123 (173)
T ss_pred             CEEEEEEECCCCH-------------HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence            3578999999942             24567788899888777765544331 1111  111222222224578899999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       124 K~Dl  127 (173)
T cd04154         124 KQDL  127 (173)
T ss_pred             Cccc
Confidence            9995

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=88.59  E-value=1.6  Score=35.80  Aligned_cols=68  Identities=13%  Similarity=0.231  Sum_probs=40.5

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHH----HhhhhcCCCCCeEEEE
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVT----DLVSQMDPQGKRTIFV  144 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al----~lar~~DP~G~RTIGV  144 (294)
                      ....|.+.|+||..             ..+.+...|++..+.||+++ ++.....-..+.    ++.+.....+.-.+.|
T Consensus        42 ~~~~l~i~D~~G~~-------------~~~~~~~~~~~~~~~iv~v~-D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv  107 (160)
T cd04156          42 KHLSLTVWDVGGQE-------------KMRTVWKCYLENTDGLVYVV-DSSDEARLDESQKELKHILKNEHIKGVPVVLL  107 (160)
T ss_pred             CceEEEEEECCCCH-------------hHHHHHHHHhccCCEEEEEE-ECCcHHHHHHHHHHHHHHHhchhhcCCCEEEE
Confidence            44679999999953             23456667888888766554 444321111111    1222212245778999


Q ss_pred             eccchh
Q psy8958         145 LTKVSQ  150 (294)
Q Consensus       145 lTK~D~  150 (294)
                      +||.|+
T Consensus       108 ~nK~Dl  113 (160)
T cd04156         108 ANKQDL  113 (160)
T ss_pred             EECccc
Confidence            999995

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04123 Rab21 Rab21 subfamily

Probab=88.45  E-value=1.4  Score=35.77  Aligned_cols=67  Identities=13%  Similarity=0.116  Sum_probs=40.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchh--cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAER--SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~an--s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.++|+||-.             ....+...|+++.+.+|+++-..+.+...  ...++..+...+...-.|.|+||.
T Consensus        49 ~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~  115 (162)
T cd04123          49 IDLAIWDTAGQE-------------RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKI  115 (162)
T ss_pred             EEEEEEECCchH-------------HHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence            468999999921             23355666777777666665443322111  112233344555567799999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       116 D~  117 (162)
T cd04123         116 DL  117 (162)
T ss_pred             cc
Confidence            95

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=88.43  E-value=1.6  Score=45.33  Aligned_cols=69  Identities=22%  Similarity=0.344  Sum_probs=42.7

Q ss_pred             EeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCe-E
Q psy8958          65 VKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKR-T  141 (294)
Q Consensus        65 I~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~R-T  141 (294)
                      +.-++ ..++|+|+||.            ...+++| ..++.+.+.+|| |++|+..+  .+.+.+.+++..   |.. -
T Consensus        45 ~~~~~-~~v~~iDtPGh------------e~f~~~~-~~g~~~aD~aIL-VVDa~~G~~~qT~ehl~il~~l---gi~~i  106 (581)
T TIGR00475        45 FPLPD-YRLGFIDVPGH------------EKFISNA-IAGGGGIDAALL-VVDADEGVMTQTGEHLAVLDLL---GIPHT  106 (581)
T ss_pred             EEeCC-EEEEEEECCCH------------HHHHHHH-HhhhccCCEEEE-EEECCCCCcHHHHHHHHHHHHc---CCCeE
Confidence            33344 67999999993            1233444 456667775555 66666433  334445555554   444 9


Q ss_pred             EEEeccchhh
Q psy8958         142 IFVLTKVSQQ  151 (294)
Q Consensus       142 IGVlTK~D~~  151 (294)
                      |.|+||+|+.
T Consensus       107 IVVlNK~Dlv  116 (581)
T TIGR00475       107 IVVITKADRV  116 (581)
T ss_pred             EEEEECCCCC
Confidence            9999999963

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=88.41  E-value=1.1  Score=37.11  Aligned_cols=75  Identities=23%  Similarity=0.377  Sum_probs=38.4

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-------chhcHH-HHhhhhcCC-----
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-------AERSNV-TDLVSQMDP-----  136 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-------~ans~a-l~lar~~DP-----  136 (294)
                      ...+.|+|+||+.......+  .+.   .. ...|++..+.+++++-..+.+       +..... ........+     
T Consensus        43 ~~~~~i~DtpG~~~~~~~~~--~~~---~~-~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (176)
T cd01881          43 GARIQVADIPGLIEGASEGR--GLG---NQ-FLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILG  116 (176)
T ss_pred             CCeEEEEeccccchhhhcCC--Ccc---HH-HHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHH
Confidence            56789999999864333221  111   11 234556666555544433331       111111 112222222     


Q ss_pred             --CCCeEEEEeccchh
Q psy8958         137 --QGKRTIFVLTKVSQ  150 (294)
Q Consensus       137 --~G~RTIGVlTK~D~  150 (294)
                        .+...+-|+||+|+
T Consensus       117 ~~~~~p~ivv~NK~Dl  132 (176)
T cd01881         117 LLTAKPVIYVLNKIDL  132 (176)
T ss_pred             HHhhCCeEEEEEchhc
Confidence              25789999999995

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>smart00175 RAB Rab subfamily of small GTPases

Probab=88.39  E-value=1.7  Score=35.57  Aligned_cols=75  Identities=13%  Similarity=0.166  Sum_probs=45.3

Q ss_pred             eEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHH---HHhhhhcCCC
Q psy8958          61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNV---TDLVSQMDPQ  137 (294)
Q Consensus        61 I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~a---l~lar~~DP~  137 (294)
                      ..+.+.+.. ..+.++|+||.             .....+...|+++.+.+|+++-..+.+ +-+.+   +......-..
T Consensus        40 ~~~~~~~~~-~~~~l~D~~G~-------------~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~l~~~~~~~~~  104 (164)
T smart00175       40 KTIEVDGKR-VKLQIWDTAGQ-------------ERFRSITSSYYRGAVGALLVYDITNRE-SFENLKNWLKELREYADP  104 (164)
T ss_pred             EEEEECCEE-EEEEEEECCCh-------------HHHHHHHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCC
Confidence            344443322 37899999992             223357788888888887777554321 11222   2233333324


Q ss_pred             CCeEEEEeccchh
Q psy8958         138 GKRTIFVLTKVSQ  150 (294)
Q Consensus       138 G~RTIGVlTK~D~  150 (294)
                      +.-.+.|.||.|+
T Consensus       105 ~~pivvv~nK~D~  117 (164)
T smart00175      105 NVVIMLVGNKSDL  117 (164)
T ss_pred             CCeEEEEEEchhc
Confidence            6889999999995

Rab GTPases are implicated in vesicle trafficking.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=88.35  E-value=2.7  Score=42.28  Aligned_cols=71  Identities=20%  Similarity=0.303  Sum_probs=41.1

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHH-HHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLI-RQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i-~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      ..++|+|+||+..      +.+..+.. -.....|+.+.+.+ +.|++++..... +-.++...  ..+...|.|+||.|
T Consensus       263 ~~i~l~DT~G~~~------~~~~ie~~gi~~~~~~~~~aD~i-l~VvD~s~~~s~-~~~~~l~~--~~~~piiiV~NK~D  332 (449)
T PRK05291        263 IPLRLIDTAGIRE------TDDEVEKIGIERSREAIEEADLV-LLVLDASEPLTE-EDDEILEE--LKDKPVIVVLNKAD  332 (449)
T ss_pred             eEEEEEeCCCCCC------CccHHHHHHHHHHHHHHHhCCEE-EEEecCCCCCCh-hHHHHHHh--cCCCCcEEEEEhhh
Confidence            4589999999853      22222221 12244677877755 555666533222 22333333  34578899999999


Q ss_pred             hh
Q psy8958         150 QQ  151 (294)
Q Consensus       150 ~~  151 (294)
                      +.
T Consensus       333 L~  334 (449)
T PRK05291        333 LT  334 (449)
T ss_pred             cc
Confidence            64

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=88.14  E-value=1.6  Score=36.47  Aligned_cols=68  Identities=16%  Similarity=0.166  Sum_probs=43.0

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-h-hcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-E-RSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-a-ns~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ...|.|.|+||.             +....+...|+++..++|++.-..+.+- . -...+...+...+.+.-.|-|.||
T Consensus        51 ~~~l~l~D~~g~-------------~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK  117 (167)
T cd01867          51 KIKLQIWDTAGQ-------------ERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNK  117 (167)
T ss_pred             EEEEEEEeCCch-------------HHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEC
Confidence            357899999993             2234556778888887776654332211 1 122334455555667788999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       118 ~Dl  120 (167)
T cd01867         118 CDM  120 (167)
T ss_pred             ccc
Confidence            995

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=88.10  E-value=2  Score=42.45  Aligned_cols=81  Identities=19%  Similarity=0.264  Sum_probs=48.3

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc---ch--hcHHH
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD---AE--RSNVT  128 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D---~a--ns~al  128 (294)
                      .+++-+.....+...+ ..++|+|+||..            +.++.|.. ++...+.+||+| +++..   ..  +...+
T Consensus        69 rg~Tid~~~~~~~~~~-~~i~iiDtpGh~------------~f~~~~~~-~~~~aD~~ilVv-Da~~~~~~~~~~t~~~~  133 (426)
T TIGR00483        69 RGVTIDVAHWKFETDK-YEVTIVDCPGHR------------DFIKNMIT-GASQADAAVLVV-AVGDGEFEVQPQTREHA  133 (426)
T ss_pred             cCceEEEEEEEEccCC-eEEEEEECCCHH------------HHHHHHHh-hhhhCCEEEEEE-ECCCCCcccCCchHHHH
Confidence            4566666666666655 479999999932            22334433 556777666654 44432   22  22223


Q ss_pred             HhhhhcCCCCCeEEEEeccchhh
Q psy8958         129 DLVSQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       129 ~lar~~DP~G~RTIGVlTK~D~~  151 (294)
                      .+++...  -.+.|.|+||.|+.
T Consensus       134 ~~~~~~~--~~~iIVviNK~Dl~  154 (426)
T TIGR00483       134 FLARTLG--INQLIVAINKMDSV  154 (426)
T ss_pred             HHHHHcC--CCeEEEEEEChhcc
Confidence            4555543  14688899999963

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=88.09  E-value=0.77  Score=49.28  Aligned_cols=66  Identities=17%  Similarity=0.293  Sum_probs=45.1

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCCCCeEEEEec
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~G~RTIGVlT  146 (294)
                      .-..++|+|+||.             +....|...|+.....+||+| +|...  ..+.++++.++.   .+...|.|+|
T Consensus       293 ~~~kItfiDTPGh-------------e~F~~mr~rg~~~aDiaILVV-DA~dGv~~QT~E~I~~~k~---~~iPiIVViN  355 (742)
T CHL00189        293 ENQKIVFLDTPGH-------------EAFSSMRSRGANVTDIAILII-AADDGVKPQTIEAINYIQA---ANVPIIVAIN  355 (742)
T ss_pred             CceEEEEEECCcH-------------HHHHHHHHHHHHHCCEEEEEE-ECcCCCChhhHHHHHHHHh---cCceEEEEEE
Confidence            3467999999994             234467778888888777766 55433  233445555543   4678999999


Q ss_pred             cchhh
Q psy8958         147 KVSQQ  151 (294)
Q Consensus       147 K~D~~  151 (294)
                      |+|+.
T Consensus       356 KiDl~  360 (742)
T CHL00189        356 KIDKA  360 (742)
T ss_pred             CCCcc
Confidence            99963

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=88.08  E-value=1.8  Score=43.90  Aligned_cols=81  Identities=12%  Similarity=0.196  Sum_probs=47.5

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc--HHHHhh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS--NVTDLV  131 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans--~al~la  131 (294)
                      .++|-++-....... -..++|||+||..            +.+++|+.. +...+ ++|.|++|+..+..|  +.+.++
T Consensus        91 rgiTid~~~~~~~~~-~~~i~~iDTPGh~------------~f~~~~~~~-l~~aD-~allVVDa~~G~~~qt~~~~~l~  155 (474)
T PRK05124         91 QGITIDVAYRYFSTE-KRKFIIADTPGHE------------QYTRNMATG-ASTCD-LAILLIDARKGVLDQTRRHSFIA  155 (474)
T ss_pred             cCCCeEeeEEEeccC-CcEEEEEECCCcH------------HHHHHHHHH-HhhCC-EEEEEEECCCCccccchHHHHHH
Confidence            345545443334333 4479999999931            234455555 35555 455666676554433  445566


Q ss_pred             hhcCCCCCeEEEEeccchhh
Q psy8958         132 SQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       132 r~~DP~G~RTIGVlTK~D~~  151 (294)
                      ....-  ...|-|+||+|+.
T Consensus       156 ~~lg~--~~iIvvvNKiD~~  173 (474)
T PRK05124        156 TLLGI--KHLVVAVNKMDLV  173 (474)
T ss_pred             HHhCC--CceEEEEEeeccc
Confidence            65541  3568899999963

>cd04122 Rab14 Rab14 subfamily

Probab=87.95  E-value=1.7  Score=36.19  Aligned_cols=74  Identities=11%  Similarity=0.133  Sum_probs=46.7

Q ss_pred             EEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-ch-hcHHHHhhhhcCCCCCe
Q psy8958          63 MSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AE-RSNVTDLVSQMDPQGKR  140 (294)
Q Consensus        63 leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~a-ns~al~lar~~DP~G~R  140 (294)
                      +.+.+.. ..|.|.|+||.             +..+.+...|+++.+++||++-..+.+ +. -...+..++.......-
T Consensus        44 ~~~~~~~-~~l~i~Dt~G~-------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~  109 (166)
T cd04122          44 IEVNGQK-IKLQIWDTAGQ-------------ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV  109 (166)
T ss_pred             EEECCEE-EEEEEEECCCc-------------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe
Confidence            4444433 47899999993             234567788999999888877665422 11 11233444444434466


Q ss_pred             EEEEeccchh
Q psy8958         141 TIFVLTKVSQ  150 (294)
Q Consensus       141 TIGVlTK~D~  150 (294)
                      -|-|.||.|+
T Consensus       110 iiiv~nK~Dl  119 (166)
T cd04122         110 IFLIGNKADL  119 (166)
T ss_pred             EEEEEECccc
Confidence            8899999995

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01861 Rab6 Rab6 subfamily

Probab=87.94  E-value=1.7  Score=35.58  Aligned_cols=67  Identities=13%  Similarity=0.152  Sum_probs=40.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchhc-HHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAERS-NVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~ans-~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..|.++|+||.             ...+.++..|++....+|+++-..+. .+... ..+...+..-+.+...|.|+||.
T Consensus        49 ~~l~~~D~~G~-------------~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~  115 (161)
T cd01861          49 VRLQLWDTAGQ-------------ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKT  115 (161)
T ss_pred             EEEEEEECCCc-------------HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEECh
Confidence            36899999992             22356788888888866655543221 12221 12222222223358899999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       116 D~  117 (161)
T cd01861         116 DL  117 (161)
T ss_pred             hc
Confidence            95

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01866 Rab2 Rab2 subfamily

Probab=87.76  E-value=1.7  Score=36.48  Aligned_cols=76  Identities=13%  Similarity=0.185  Sum_probs=45.1

Q ss_pred             ceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHH---hhhhcCC
Q psy8958          60 VISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTD---LVSQMDP  136 (294)
Q Consensus        60 ~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~---lar~~DP  136 (294)
                      ...+++.+-. -.++|+|+||.             +....+...|.++..++|+++ +++..-.-+.+.+   ..++.-.
T Consensus        43 ~~~~~~~~~~-~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~il~v~-d~~~~~s~~~~~~~~~~~~~~~~  107 (168)
T cd01866          43 ARMITIDGKQ-IKLQIWDTAGQ-------------ESFRSITRSYYRGAAGALLVY-DITRRETFNHLTSWLEDARQHSN  107 (168)
T ss_pred             EEEEEECCEE-EEEEEEECCCc-------------HHHHHHHHHHhccCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhCC
Confidence            4445555433 37999999992             234567788999888877655 4442111112222   2233322


Q ss_pred             CCCeEEEEeccchh
Q psy8958         137 QGKRTIFVLTKVSQ  150 (294)
Q Consensus       137 ~G~RTIGVlTK~D~  150 (294)
                      .+..-|.|.||.|+
T Consensus       108 ~~~pvivv~nK~Dl  121 (168)
T cd01866         108 SNMTIMLIGNKCDL  121 (168)
T ss_pred             CCCcEEEEEECccc
Confidence            34667999999985

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=87.71  E-value=2  Score=35.07  Aligned_cols=76  Identities=14%  Similarity=0.172  Sum_probs=44.8

Q ss_pred             eEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-h-hcHHHHhhhh-cCC-
Q psy8958          61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-E-RSNVTDLVSQ-MDP-  136 (294)
Q Consensus        61 I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-a-ns~al~lar~-~DP-  136 (294)
                      -.+.+.+ ....|.|+|+||.-             ....+...|.+....+|+++-..+.+- . -...+....+ ..+ 
T Consensus        40 ~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~  105 (168)
T cd04119          40 KKVSVRN-KEVRVNFFDLSGHP-------------EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPH  105 (168)
T ss_pred             EEEEECC-eEEEEEEEECCccH-------------HHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccc
Confidence            3455544 34589999999952             223566778888887777654332210 0 1122223332 332 


Q ss_pred             ---CCCeEEEEeccchh
Q psy8958         137 ---QGKRTIFVLTKVSQ  150 (294)
Q Consensus       137 ---~G~RTIGVlTK~D~  150 (294)
                         .+..-|.|.||.|+
T Consensus       106 ~~~~~~piilv~nK~Dl  122 (168)
T cd04119         106 GNMENIVVVVCANKIDL  122 (168)
T ss_pred             ccCCCceEEEEEEchhc
Confidence               46789999999995

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=87.60  E-value=1.3  Score=35.94  Aligned_cols=67  Identities=13%  Similarity=0.087  Sum_probs=42.1

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchhcH-H-HHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAERSN-V-TDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~ans~-a-l~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.++|+||.-             ..+.|...|++..+++++++...+. .+.+.. . ..+.+..+..+...|.|.||
T Consensus        49 ~~~~i~Dt~G~~-------------~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK  115 (162)
T cd04138          49 CLLDILDTAGQE-------------EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNK  115 (162)
T ss_pred             EEEEEEECCCCc-------------chHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            457889999932             2356778899988887777654332 122211 1 22333334556778999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       116 ~Dl  118 (162)
T cd04138         116 CDL  118 (162)
T ss_pred             ccc
Confidence            995

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=87.47  E-value=1.1  Score=45.27  Aligned_cols=68  Identities=13%  Similarity=0.316  Sum_probs=44.5

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                      ++.|||+||..+.     .++..+.++.+.. .+ .|..++| |++|+.   .+++...|+.+...-.-+=.|+||.|-
T Consensus       177 DvVIIDTAGr~~~-----d~~lm~El~~l~~-~~-~pdevlL-Vvda~~---gq~av~~a~~F~~~l~i~gvIlTKlD~  244 (437)
T PRK00771        177 DVIIVDTAGRHAL-----EEDLIEEMKEIKE-AV-KPDEVLL-VIDATI---GQQAKNQAKAFHEAVGIGGIIITKLDG  244 (437)
T ss_pred             CEEEEECCCcccc-----hHHHHHHHHHHHH-Hh-cccceeE-EEeccc---cHHHHHHHHHHHhcCCCCEEEEecccC
Confidence            8999999997643     2344455555433 22 4554544 555654   378888888887654556679999994

>cd04159 Arl10_like Arl10-like subfamily

Probab=87.45  E-value=1.7  Score=34.77  Aligned_cols=66  Identities=20%  Similarity=0.209  Sum_probs=39.7

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcH----HHHhhhhcCCCCCeEEEEec
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSN----VTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~----al~lar~~DP~G~RTIGVlT  146 (294)
                      ..+.++|+||..             ..+.+...|++..+.+++++ +++..-.-..    ..++.+.....+...+.|+|
T Consensus        44 ~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~ii~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n  109 (159)
T cd04159          44 VTLKVWDLGGQP-------------RFRSMWERYCRGVNAIVYVV-DAADRTALEAAKNELHDLLEKPSLEGIPLLVLGN  109 (159)
T ss_pred             EEEEEEECCCCH-------------hHHHHHHHHHhcCCEEEEEE-ECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEe
Confidence            579999999942             24467778888888766654 4443111111    11222222223567899999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       110 K~D~  113 (159)
T cd04159         110 KNDL  113 (159)
T ss_pred             Cccc
Confidence            9984

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=87.41  E-value=1.9  Score=37.14  Aligned_cols=67  Identities=15%  Similarity=0.198  Sum_probs=42.2

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.++|+||...             .+.+...|+.+-+.+|++|-..+.+ ++..  ...++.+...-.+...|.|+||
T Consensus        61 ~~~~~~D~~G~~~-------------~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK  127 (184)
T smart00178       61 IKFTTFDLGGHQQ-------------ARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNK  127 (184)
T ss_pred             EEEEEEECCCCHH-------------HHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeC
Confidence            5789999999632             2456678999988887776544322 2111  1122333222246789999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       128 ~Dl  130 (184)
T smart00178      128 IDA  130 (184)
T ss_pred             ccc
Confidence            995

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=87.32  E-value=1.3  Score=46.19  Aligned_cols=63  Identities=11%  Similarity=0.239  Sum_probs=41.6

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      -.++|+|+||.-.             ...|..++......+||+| +++..  ..+.++++.++.   .+.-.|.++||+
T Consensus       135 ~~i~~iDTPGhe~-------------F~~~r~rga~~aDiaILVV-da~dgv~~qT~e~i~~~~~---~~vPiIVviNKi  197 (587)
T TIGR00487       135 KMITFLDTPGHEA-------------FTSMRARGAKVTDIVVLVV-AADDGVMPQTIEAISHAKA---ANVPIIVAINKI  197 (587)
T ss_pred             cEEEEEECCCCcc-------------hhhHHHhhhccCCEEEEEE-ECCCCCCHhHHHHHHHHHH---cCCCEEEEEECc
Confidence            3799999999432             2245567777777777766 55532  233444555544   456799999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       198 Dl  199 (587)
T TIGR00487       198 DK  199 (587)
T ss_pred             cc
Confidence            96

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01882 BMS1 Bms1

Probab=87.23  E-value=2  Score=38.83  Aligned_cols=67  Identities=19%  Similarity=0.246  Sum_probs=40.0

Q ss_pred             EeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc--HHHHhhhhcCCCCCeEE
Q psy8958          65 VKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS--NVTDLVSQMDPQGKRTI  142 (294)
Q Consensus        65 I~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans--~al~lar~~DP~G~RTI  142 (294)
                      +..+.--.++++|.||..           ...+..     ++.- -++|.|++++..+..+  .++.+++...  ..+.|
T Consensus        77 i~~~~~~~i~~vDtPg~~-----------~~~l~~-----ak~a-DvVllviDa~~~~~~~~~~i~~~l~~~g--~p~vi  137 (225)
T cd01882          77 VVTGKKRRLTFIECPNDI-----------NAMIDI-----AKVA-DLVLLLIDASFGFEMETFEFLNILQVHG--FPRVM  137 (225)
T ss_pred             EEecCCceEEEEeCCchH-----------HHHHHH-----HHhc-CEEEEEEecCcCCCHHHHHHHHHHHHcC--CCeEE
Confidence            344567789999999843           111111     2223 3667778877655433  3445555432  34678


Q ss_pred             EEeccchh
Q psy8958         143 FVLTKVSQ  150 (294)
Q Consensus       143 GVlTK~D~  150 (294)
                      +|+||.|+
T Consensus       138 ~VvnK~D~  145 (225)
T cd01882         138 GVLTHLDL  145 (225)
T ss_pred             EEEecccc
Confidence            89999995

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd04113 Rab4 Rab4 subfamily

Probab=87.22  E-value=2.1  Score=35.16  Aligned_cols=75  Identities=13%  Similarity=0.112  Sum_probs=44.9

Q ss_pred             EEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch-h-cHHHHhhhhcCCCCC
Q psy8958          62 SMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE-R-SNVTDLVSQMDPQGK  139 (294)
Q Consensus        62 ~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a-n-s~al~lar~~DP~G~  139 (294)
                      .+.+.+ ....|.|+|+||.             +....+...|+++...+|+++-..+.+-. + ...+...+.+-..+.
T Consensus        41 ~~~~~~-~~~~l~l~D~~G~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  106 (161)
T cd04113          41 IIRVGG-KRVKLQIWDTAGQ-------------ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNI  106 (161)
T ss_pred             EEEECC-EEEEEEEEECcch-------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC
Confidence            344443 3467899999994             22345777888888877776655442111 1 122233333333346


Q ss_pred             eEEEEeccchh
Q psy8958         140 RTIFVLTKVSQ  150 (294)
Q Consensus       140 RTIGVlTK~D~  150 (294)
                      -.+.|.||.|+
T Consensus       107 ~iivv~nK~D~  117 (161)
T cd04113         107 VVILVGNKSDL  117 (161)
T ss_pred             eEEEEEEchhc
Confidence            68889999995

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PRK13768 GTPase; Provisional

Probab=87.14  E-value=0.9  Score=42.04  Aligned_cols=74  Identities=23%  Similarity=0.278  Sum_probs=42.5

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-----cchhcHHHHhhhhcCCCCCeEEEEe
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-----DAERSNVTDLVSQMDPQGKRTIFVL  145 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-----D~ans~al~lar~~DP~G~RTIGVl  145 (294)
                      .+..++|+||.......      ....+.+++.+......+|+.|+++..     |+.....+.+..+.. .+...|-|+
T Consensus        97 ~~~~~~d~~g~~~~~~~------~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~  169 (253)
T PRK13768         97 ADYVLVDTPGQMELFAF------RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVL  169 (253)
T ss_pred             CCEEEEeCCcHHHHHhh------hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEE
Confidence            48999999998764432      112222332222222668888888842     233333333333332 368899999


Q ss_pred             ccchhh
Q psy8958         146 TKVSQQ  151 (294)
Q Consensus       146 TK~D~~  151 (294)
                      ||.|+.
T Consensus       170 nK~D~~  175 (253)
T PRK13768        170 NKADLL  175 (253)
T ss_pred             EhHhhc
Confidence            999963

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=87.14  E-value=1.4  Score=47.18  Aligned_cols=80  Identities=16%  Similarity=0.304  Sum_probs=52.6

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCC--CCceEEEeccCC---CcchhcHHHHhhhh-cCCC-CCeEE
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSN--PNAIILCIQDGS---VDAERSNVTDLVSQ-MDPQ-GKRTI  142 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~--p~sIILaV~~a~---~D~ans~al~lar~-~DP~-G~RTI  142 (294)
                      -..+.+||+||+......   +...+.+.+.+..||+.  ++ ++|.|....   .|.....+++..++ +.+. ..+||
T Consensus       165 G~~L~VIDTPGL~dt~~d---q~~neeILk~Ik~~Lsk~gpD-VVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tI  240 (763)
T TIGR00993       165 GVKIRVIDTPGLKSSASD---QSKNEKILSSVKKFIKKNPPD-IVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAI  240 (763)
T ss_pred             CceEEEEECCCCCccccc---hHHHHHHHHHHHHHHhcCCCC-EEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEE
Confidence            357999999999986432   23455666777778774  54 677776643   34455556665543 3322 57999


Q ss_pred             EEeccchhhhh
Q psy8958         143 FVLTKVSQQLI  153 (294)
Q Consensus       143 GVlTK~D~~~~  153 (294)
                      -|+|..|....
T Consensus       241 VVFThgD~lpp  251 (763)
T TIGR00993       241 VTLTHAASAPP  251 (763)
T ss_pred             EEEeCCccCCC
Confidence            99999997643

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=87.00  E-value=1.2  Score=47.16  Aligned_cols=79  Identities=13%  Similarity=0.174  Sum_probs=46.7

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc--HHHHhhh
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS--NVTDLVS  132 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans--~al~lar  132 (294)
                      +++-+.....+.-.+ ..++|+|+||.....             ..+..+++.-+.+|| |++|......+  .++++++
T Consensus        60 giti~~~~~~~~~~~-~~i~liDTPG~~~~~-------------~~~~~~l~~~D~~il-Vvda~~g~~~~~~~~~~~~~  124 (689)
T TIGR00484        60 GITITSAATTVFWKG-HRINIIDTPGHVDFT-------------VEVERSLRVLDGAVA-VLDAVGGVQPQSETVWRQAN  124 (689)
T ss_pred             CCCEecceEEEEECC-eEEEEEECCCCcchh-------------HHHHHHHHHhCEEEE-EEeCCCCCChhHHHHHHHHH
Confidence            344444344444433 479999999985411             124566666665554 55666544332  3444444


Q ss_pred             hcCCCCCeEEEEeccchhh
Q psy8958         133 QMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       133 ~~DP~G~RTIGVlTK~D~~  151 (294)
                         ..+...|.|++|+|+.
T Consensus       125 ---~~~~p~ivviNK~D~~  140 (689)
T TIGR00484       125 ---RYEVPRIAFVNKMDKT  140 (689)
T ss_pred             ---HcCCCEEEEEECCCCC
Confidence               4467889999999964

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK12735 elongation factor Tu; Reviewed

Probab=86.91  E-value=1.5  Score=43.20  Aligned_cols=80  Identities=14%  Similarity=0.174  Sum_probs=44.8

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc--HHHHhh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS--NVTDLV  131 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans--~al~la  131 (294)
                      .+++-+...+.... +-..++|+|+||..            +.+.+|+.. +...+. +|.|++|...+..|  +.+.++
T Consensus        59 rGiT~~~~~~~~~~-~~~~i~~iDtPGh~------------~f~~~~~~~-~~~aD~-~llVvda~~g~~~qt~e~l~~~  123 (396)
T PRK12735         59 RGITINTSHVEYET-ANRHYAHVDCPGHA------------DYVKNMITG-AAQMDG-AILVVSAADGPMPQTREHILLA  123 (396)
T ss_pred             cCceEEEeeeEEcC-CCcEEEEEECCCHH------------HHHHHHHhh-hccCCE-EEEEEECCCCCchhHHHHHHHH
Confidence            34444444444332 33468999999952            334455433 334554 45566666545444  344454


Q ss_pred             hhcCCCCCeEE-EEeccchhh
Q psy8958         132 SQMDPQGKRTI-FVLTKVSQQ  151 (294)
Q Consensus       132 r~~DP~G~RTI-GVlTK~D~~  151 (294)
                      +   ..|...| .|+||+|+.
T Consensus       124 ~---~~gi~~iivvvNK~Dl~  141 (396)
T PRK12735        124 R---QVGVPYIVVFLNKCDMV  141 (396)
T ss_pred             H---HcCCCeEEEEEEecCCc
Confidence            4   4456655 579999964

>cd04106 Rab23_lke Rab23-like subfamily

Probab=86.85  E-value=1.4  Score=36.10  Aligned_cols=68  Identities=19%  Similarity=0.170  Sum_probs=41.1

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc-HHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS-NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans-~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ...+.|+|+||.             +....+...|++..+.++++....+.+ +.+. ..++..+...+ +.-.|.|.||
T Consensus        50 ~~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK  115 (162)
T cd04106          50 DVRLMLWDTAGQ-------------EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTK  115 (162)
T ss_pred             EEEEEEeeCCch-------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence            357999999992             234567788998888777666443322 1111 11222222222 4678999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      .|+.
T Consensus       116 ~Dl~  119 (162)
T cd04106         116 IDLL  119 (162)
T ss_pred             hhcc
Confidence            9963

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=86.79  E-value=1.9  Score=45.01  Aligned_cols=75  Identities=16%  Similarity=0.276  Sum_probs=48.1

Q ss_pred             ccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhhhh
Q psy8958          56 VSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLVSQ  133 (294)
Q Consensus        56 ~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~lar~  133 (294)
                      +......++-.   -..++|||+||...             ....+..|++..+.+||+| +|.....  +..+++.+++
T Consensus        52 I~~~~~~v~~~---~~kinlIDTPGh~D-------------F~~ev~~~l~~aD~alLVV-Da~~G~~~qT~~~l~~a~~  114 (594)
T TIGR01394        52 ILAKNTAIRYN---GTKINIVDTPGHAD-------------FGGEVERVLGMVDGVLLLV-DASEGPMPQTRFVLKKALE  114 (594)
T ss_pred             EEeeeEEEEEC---CEEEEEEECCCHHH-------------HHHHHHHHHHhCCEEEEEE-eCCCCCcHHHHHHHHHHHH
Confidence            33344444433   25799999999521             2245677888888777655 5554433  3455666666


Q ss_pred             cCCCCCeEEEEeccchh
Q psy8958         134 MDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       134 ~DP~G~RTIGVlTK~D~  150 (294)
                      .   |...|.|+||.|+
T Consensus       115 ~---~ip~IVviNKiD~  128 (594)
T TIGR01394       115 L---GLKPIVVINKIDR  128 (594)
T ss_pred             C---CCCEEEEEECCCC
Confidence            4   5678999999995

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>COG1084 Predicted GTPase [General function prediction only]

Probab=86.75  E-value=2.3  Score=41.66  Aligned_cols=90  Identities=17%  Similarity=0.266  Sum_probs=62.4

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC----cchhcHHHHh
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV----DAERSNVTDL  130 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~----D~ans~al~l  130 (294)
                      .|+..-|.|=-..-+.....+||+|||-.-|.     +-...|+...--=+++=..+||.+++++-    .++.|..|  
T Consensus       199 PFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl-----~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L--  271 (346)
T COG1084         199 PFTTKGIHVGHFERGYLRIQVIDTPGLLDRPL-----EERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISL--  271 (346)
T ss_pred             CccccceeEeeeecCCceEEEecCCcccCCCh-----HHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHH--
Confidence            36666677777777778899999999996554     44566666555556666779999988774    45555543  


Q ss_pred             hhhcCCCC-CeEEEEeccchhh
Q psy8958         131 VSQMDPQG-KRTIFVLTKVSQQ  151 (294)
Q Consensus       131 ar~~DP~G-~RTIGVlTK~D~~  151 (294)
                      -+++-+.. ..++-|+||.|..
T Consensus       272 ~~eIk~~f~~p~v~V~nK~D~~  293 (346)
T COG1084         272 LEEIKELFKAPIVVVINKIDIA  293 (346)
T ss_pred             HHHHHHhcCCCeEEEEeccccc
Confidence            33333333 4799999999953

>cd04169 RF3 RF3 subfamily

Probab=86.74  E-value=1.2  Score=41.65  Aligned_cols=75  Identities=17%  Similarity=0.310  Sum_probs=45.0

Q ss_pred             ccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhhhh
Q psy8958          56 VSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLVSQ  133 (294)
Q Consensus        56 ~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~lar~  133 (294)
                      ++.....++..+   ..+.|+|+||....             ...+..+++...++|+++ ++...+.  ...++++++.
T Consensus        59 i~~~~~~~~~~~---~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVv-da~~g~~~~~~~i~~~~~~  121 (267)
T cd04169          59 VTSSVMQFEYRD---CVINLLDTPGHEDF-------------SEDTYRTLTAVDSAVMVI-DAAKGVEPQTRKLFEVCRL  121 (267)
T ss_pred             eEEEEEEEeeCC---EEEEEEECCCchHH-------------HHHHHHHHHHCCEEEEEE-ECCCCccHHHHHHHHHHHh
Confidence            334444444432   56899999996421             123455667778776654 5544333  2344444443


Q ss_pred             cCCCCCeEEEEeccchh
Q psy8958         134 MDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       134 ~DP~G~RTIGVlTK~D~  150 (294)
                         .+...|.|++|.|+
T Consensus       122 ---~~~P~iivvNK~D~  135 (267)
T cd04169         122 ---RGIPIITFINKLDR  135 (267)
T ss_pred             ---cCCCEEEEEECCcc
Confidence               46678999999995

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=86.41  E-value=2.7  Score=41.59  Aligned_cols=81  Identities=12%  Similarity=0.191  Sum_probs=50.1

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc--HHHHhh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS--NVTDLV  131 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans--~al~la  131 (294)
                      .++|-+.-...+..++. .++|+|+||..            +.+.+|... +...+. +|.|++|+..+..|  +.+.++
T Consensus        64 rgiTid~~~~~~~~~~~-~~~liDtPGh~------------~f~~~~~~~-~~~aD~-allVVda~~G~~~qt~~~~~~~  128 (406)
T TIGR02034        64 QGITIDVAYRYFSTDKR-KFIVADTPGHE------------QYTRNMATG-ASTADL-AVLLVDARKGVLEQTRRHSYIA  128 (406)
T ss_pred             CCcCeEeeeEEEccCCe-EEEEEeCCCHH------------HHHHHHHHH-HhhCCE-EEEEEECCCCCccccHHHHHHH
Confidence            45666666666655444 79999999932            234444433 345554 45566777655443  446677


Q ss_pred             hhcCCCCCeEEEEeccchhh
Q psy8958         132 SQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       132 r~~DP~G~RTIGVlTK~D~~  151 (294)
                      +...  ..+-|-|+||.|+.
T Consensus       129 ~~~~--~~~iivviNK~D~~  146 (406)
T TIGR02034       129 SLLG--IRHVVLAVNKMDLV  146 (406)
T ss_pred             HHcC--CCcEEEEEEecccc
Confidence            6664  23567799999963

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01860 Rab5_related Rab5-related subfamily

Probab=86.36  E-value=2.5  Score=34.65  Aligned_cols=67  Identities=13%  Similarity=0.101  Sum_probs=40.5

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      -.+.|+|+||-             +....+...|++..+++|+++-+.+.+ +.. ...+...+.....+.--|.|+||.
T Consensus        50 ~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~  116 (163)
T cd01860          50 VKFEIWDTAGQ-------------ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKA  116 (163)
T ss_pred             EEEEEEeCCch-------------HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence            45889999992             223455667888888888877554432 221 122233333333345568889999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       117 D~  118 (163)
T cd01860         117 DL  118 (163)
T ss_pred             cc
Confidence            85

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=86.36  E-value=2  Score=45.46  Aligned_cols=86  Identities=23%  Similarity=0.341  Sum_probs=52.7

Q ss_pred             CccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCC-ceEEEeccCCCcchhcHHHHhh
Q psy8958          53 GKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPN-AIILCIQDGSVDAERSNVTDLV  131 (294)
Q Consensus        53 ~~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~-sIILaV~~a~~D~ans~al~la  131 (294)
                      |.++-...=.++..|-.   .++|||||+..-....   .++    ..+++|+.+.+ .+|+.|++|.+ ++.  .+.+.
T Consensus        35 GvTVEkkeg~~~~~~~~---i~ivDLPG~YSL~~~S---~DE----~Var~~ll~~~~D~ivnVvDAtn-LeR--nLylt  101 (653)
T COG0370          35 GVTVEKKEGKLKYKGHE---IEIVDLPGTYSLTAYS---EDE----KVARDFLLEGKPDLIVNVVDATN-LER--NLYLT  101 (653)
T ss_pred             CeeEEEEEEEEEecCce---EEEEeCCCcCCCCCCC---chH----HHHHHHHhcCCCCEEEEEcccch-HHH--HHHHH
Confidence            34444455555555543   8999999998866542   223    34455655433 57888888774 332  33333


Q ss_pred             hhcCCCCCeEEEEeccchhh
Q psy8958         132 SQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       132 r~~DP~G~RTIGVlTK~D~~  151 (294)
                      -+.=--|.=+|.++++.|..
T Consensus       102 lQLlE~g~p~ilaLNm~D~A  121 (653)
T COG0370         102 LQLLELGIPMILALNMIDEA  121 (653)
T ss_pred             HHHHHcCCCeEEEeccHhhH
Confidence            33333456699999999965

>PRK05433 GTP-binding protein LepA; Provisional

Probab=86.25  E-value=2.4  Score=44.34  Aligned_cols=79  Identities=19%  Similarity=0.258  Sum_probs=48.5

Q ss_pred             cccccceEEEEeCCC--CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcH--HHHh
Q psy8958          55 TVSNEVISMSVKGPG--LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSN--VTDL  130 (294)
Q Consensus        55 ~~S~~~I~leI~gP~--~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~--al~l  130 (294)
                      ++....+.+....++  ...++|+|+||....             ...+.+|++.-..+|| |++++..+..+.  .+.+
T Consensus        56 Ti~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF-------------~~~v~~sl~~aD~aIL-VVDas~gv~~qt~~~~~~  121 (600)
T PRK05433         56 TIKAQAVRLNYKAKDGETYILNLIDTPGHVDF-------------SYEVSRSLAACEGALL-VVDASQGVEAQTLANVYL  121 (600)
T ss_pred             cccccEEEEEEEccCCCcEEEEEEECCCcHHH-------------HHHHHHHHHHCCEEEE-EEECCCCCCHHHHHHHHH
Confidence            344455665554222  356899999997531             2346677777776655 556655444333  3444


Q ss_pred             hhhcCCCCCeEEEEeccchh
Q psy8958         131 VSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       131 ar~~DP~G~RTIGVlTK~D~  150 (294)
                      +..   .+...|.|+||.|+
T Consensus       122 ~~~---~~lpiIvViNKiDl  138 (600)
T PRK05433        122 ALE---NDLEIIPVLNKIDL  138 (600)
T ss_pred             HHH---CCCCEEEEEECCCC
Confidence            443   35678999999995

>PRK14845 translation initiation factor IF-2; Provisional

Probab=86.16  E-value=1.3  Score=49.27  Aligned_cols=66  Identities=11%  Similarity=0.158  Sum_probs=42.4

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhhhhcCCCCCeEEEEec
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~lar~~DP~G~RTIGVlT  146 (294)
                      ..|.++|+|+||.-             ....|...+....+.+ +.|++++..+.  +.+++++++..   +...|.|+|
T Consensus       524 ~~p~i~fiDTPGhe-------------~F~~lr~~g~~~aDiv-lLVVDa~~Gi~~qT~e~I~~lk~~---~iPiIVViN  586 (1049)
T PRK14845        524 KIPGLLFIDTPGHE-------------AFTSLRKRGGSLADLA-VLVVDINEGFKPQTIEAINILRQY---KTPFVVAAN  586 (1049)
T ss_pred             CcCcEEEEECCCcH-------------HHHHHHHhhcccCCEE-EEEEECcccCCHhHHHHHHHHHHc---CCCEEEEEE
Confidence            45789999999921             1234445566666655 45556664433  33455666665   457999999


Q ss_pred             cchhh
Q psy8958         147 KVSQQ  151 (294)
Q Consensus       147 K~D~~  151 (294)
                      |+|+.
T Consensus       587 KiDL~  591 (1049)
T PRK14845        587 KIDLI  591 (1049)
T ss_pred             CCCCc
Confidence            99964

>cd04114 Rab30 Rab30 subfamily

Probab=86.09  E-value=2.4  Score=35.05  Aligned_cols=67  Identities=21%  Similarity=0.180  Sum_probs=41.9

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-ch-hcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AE-RSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~a-ns~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.++|+||..             ....+...|++..+++|+++-..+.+ +. -...+...+.....+...|-|.||.
T Consensus        56 ~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~  122 (169)
T cd04114          56 IKLQIWDTAGQE-------------RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKI  122 (169)
T ss_pred             EEEEEEECCCcH-------------HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence            468899999932             13345567888888777766543221 10 1123333455555567789999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       123 D~  124 (169)
T cd04114         123 DL  124 (169)
T ss_pred             cc
Confidence            95

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK10867 signal recognition particle protein; Provisional

Probab=86.04  E-value=1.9  Score=43.41  Aligned_cols=70  Identities=20%  Similarity=0.288  Sum_probs=45.8

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      -.++.|||+||..+.     .+.....+..+.. .+ .|.-+ +.|++|.   ..+++.+.|+.+...-.-|=.|+||+|
T Consensus       183 ~~DvVIIDTaGrl~~-----d~~lm~eL~~i~~-~v-~p~ev-llVlda~---~gq~av~~a~~F~~~~~i~giIlTKlD  251 (433)
T PRK10867        183 GYDVVIVDTAGRLHI-----DEELMDELKAIKA-AV-NPDEI-LLVVDAM---TGQDAVNTAKAFNEALGLTGVILTKLD  251 (433)
T ss_pred             CCCEEEEeCCCCccc-----CHHHHHHHHHHHH-hh-CCCeE-EEEEecc---cHHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence            478999999997642     2333444444332 33 45555 5566654   358888888888765556778999999


Q ss_pred             h
Q psy8958         150 Q  150 (294)
Q Consensus       150 ~  150 (294)
                      -
T Consensus       252 ~  252 (433)
T PRK10867        252 G  252 (433)
T ss_pred             C
Confidence            4

>PRK00049 elongation factor Tu; Reviewed

Probab=85.98  E-value=2.8  Score=41.28  Aligned_cols=80  Identities=18%  Similarity=0.230  Sum_probs=46.6

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLV  131 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~la  131 (294)
                      .+++-+...+.... +-..++|||+||..            +.+.++... +...+.++| |++|...+.  +.+.+.++
T Consensus        59 rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~------------~f~~~~~~~-~~~aD~~ll-VVDa~~g~~~qt~~~~~~~  123 (396)
T PRK00049         59 RGITINTAHVEYET-EKRHYAHVDCPGHA------------DYVKNMITG-AAQMDGAIL-VVSAADGPMPQTREHILLA  123 (396)
T ss_pred             cCeEEeeeEEEEcC-CCeEEEEEECCCHH------------HHHHHHHhh-hccCCEEEE-EEECCCCCchHHHHHHHHH
Confidence            34555554444432 33468999999963            344455433 455665544 666665433  33456666


Q ss_pred             hhcCCCCCeEE-EEeccchhh
Q psy8958         132 SQMDPQGKRTI-FVLTKVSQQ  151 (294)
Q Consensus       132 r~~DP~G~RTI-GVlTK~D~~  151 (294)
                      +..   |...| .|+||.|+.
T Consensus       124 ~~~---g~p~iiVvvNK~D~~  141 (396)
T PRK00049        124 RQV---GVPYIVVFLNKCDMV  141 (396)
T ss_pred             HHc---CCCEEEEEEeecCCc
Confidence            665   45554 689999963

>cd01865 Rab3 Rab3 subfamily

Probab=85.88  E-value=2.7  Score=35.03  Aligned_cols=67  Identities=13%  Similarity=0.127  Sum_probs=43.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||..             ....+...|+++.+++++++-..+.+-  +-...++..++..+....-+.|.||+
T Consensus        50 ~~~~l~Dt~g~~-------------~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~  116 (165)
T cd01865          50 VKLQIWDTAGQE-------------RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKC  116 (165)
T ss_pred             EEEEEEECCChH-------------HHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECc
Confidence            578999999932             234567888888887777655433210  11223344555555567789999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       117 Dl  118 (165)
T cd01865         117 DM  118 (165)
T ss_pred             cc
Confidence            95

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PRK12739 elongation factor G; Reviewed

Probab=85.78  E-value=1.2  Score=47.19  Aligned_cols=81  Identities=15%  Similarity=0.179  Sum_probs=47.2

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhc
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQM  134 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~  134 (294)
                      ++|-+.-.+.+.- +-..++|||+||...        ..     ..+..++..-+. ++.|++|...+..++ ..+.+.+
T Consensus        58 giti~~~~~~~~~-~~~~i~liDTPG~~~--------f~-----~e~~~al~~~D~-~ilVvDa~~g~~~qt-~~i~~~~  121 (691)
T PRK12739         58 GITITSAATTCFW-KGHRINIIDTPGHVD--------FT-----IEVERSLRVLDG-AVAVFDAVSGVEPQS-ETVWRQA  121 (691)
T ss_pred             CCCccceeEEEEE-CCEEEEEEcCCCHHH--------HH-----HHHHHHHHHhCe-EEEEEeCCCCCCHHH-HHHHHHH
Confidence            3444433333333 234689999999743        11     125555555564 555666765554432 2344444


Q ss_pred             CCCCCeEEEEeccchhh
Q psy8958         135 DPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       135 DP~G~RTIGVlTK~D~~  151 (294)
                      ...|...|.+++|.|+.
T Consensus       122 ~~~~~p~iv~iNK~D~~  138 (691)
T PRK12739        122 DKYGVPRIVFVNKMDRI  138 (691)
T ss_pred             HHcCCCEEEEEECCCCC
Confidence            44577889999999964

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=85.73  E-value=1.9  Score=45.07  Aligned_cols=64  Identities=13%  Similarity=0.215  Sum_probs=42.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      +.++|+|+||.-             ....|...|....+.+|| |++++..  ..+.+++++++..   +...|-|+||+
T Consensus        69 ~~l~~iDTpG~e-------------~f~~l~~~~~~~aD~~Il-VvD~~~g~~~qt~e~i~~l~~~---~vpiIVv~NK~  131 (590)
T TIGR00491        69 PGLLFIDTPGHE-------------AFTNLRKRGGALADLAIL-IVDINEGFKPQTQEALNILRMY---KTPFVVAANKI  131 (590)
T ss_pred             CcEEEEECCCcH-------------hHHHHHHHHHhhCCEEEE-EEECCcCCCHhHHHHHHHHHHc---CCCEEEEEECC
Confidence            569999999942             233566678887776665 5555543  2334455555543   56799999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       132 Dl~  134 (590)
T TIGR00491       132 DRI  134 (590)
T ss_pred             Ccc
Confidence            964

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=85.61  E-value=2.1  Score=43.30  Aligned_cols=73  Identities=10%  Similarity=0.147  Sum_probs=38.1

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      +-.++.|||+||......     ...+.+.++....-.....-.+.|++|+...  .++.+.++.+..-|- +=.|+||+
T Consensus       298 ~~~D~VLIDTaGr~~rd~-----~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~~~-~glIlTKL  369 (432)
T PRK12724        298 DGSELILIDTAGYSHRNL-----EQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESLNY-RRILLTKL  369 (432)
T ss_pred             CCCCEEEEeCCCCCccCH-----HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCCCC-CEEEEEcc
Confidence            356899999999764322     2233334443222111222344566666432  334445555544332 33599999


Q ss_pred             h
Q psy8958         149 S  149 (294)
Q Consensus       149 D  149 (294)
                      |
T Consensus       370 D  370 (432)
T PRK12724        370 D  370 (432)
T ss_pred             c
Confidence            8

>cd00879 Sar1 Sar1 subfamily

Probab=85.58  E-value=1.9  Score=36.68  Aligned_cols=67  Identities=12%  Similarity=0.215  Sum_probs=40.7

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-ch--hcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AE--RSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~a--ns~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.++|+||..             ..+.+...|+...+.+|+++-..+.+ +.  ......+.+..+-.+...|.|.||
T Consensus        63 ~~~~l~D~~G~~-------------~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK  129 (190)
T cd00879          63 IKFKTFDLGGHE-------------QARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNK  129 (190)
T ss_pred             EEEEEEECCCCH-------------HHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeC
Confidence            468899999932             22456678888888777666544321 11  111122223333345788999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       130 ~Dl  132 (190)
T cd00879         130 IDL  132 (190)
T ss_pred             CCC
Confidence            995

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=85.55  E-value=2.6  Score=35.89  Aligned_cols=74  Identities=14%  Similarity=0.201  Sum_probs=45.8

Q ss_pred             EEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc-HHHHhhhhc-CCCCC
Q psy8958          63 MSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS-NVTDLVSQM-DPQGK  139 (294)
Q Consensus        63 leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans-~al~lar~~-DP~G~  139 (294)
                      +.+.|. -..|.|.|+||..             ..+.|...|+...+++|+++...+.+ +.+- ...+..++. ...+.
T Consensus        43 ~~~~~~-~~~l~i~Dt~G~~-------------~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~  108 (172)
T cd04141          43 ARIDNE-PALLDILDTAGQA-------------EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDI  108 (172)
T ss_pred             EEECCE-EEEEEEEeCCCch-------------hhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCC
Confidence            444443 3468999999943             23567888999988888876654432 1111 112223332 33457


Q ss_pred             eEEEEeccchh
Q psy8958         140 RTIFVLTKVSQ  150 (294)
Q Consensus       140 RTIGVlTK~D~  150 (294)
                      ..|.|.||.|+
T Consensus       109 piilvgNK~Dl  119 (172)
T cd04141         109 PLVLVGNKVDL  119 (172)
T ss_pred             CEEEEEEChhh
Confidence            89999999995

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>TIGR00959 ffh signal recognition particle protein

Probab=85.45  E-value=2  Score=43.29  Aligned_cols=71  Identities=20%  Similarity=0.296  Sum_probs=46.5

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      .-.++.|||+||....     .+.....+..+..  +-+|.-++| |++|+   ..+++.+.|+.+...-.-|=.|+||+
T Consensus       181 ~~~DvVIIDTaGr~~~-----d~~l~~eL~~i~~--~~~p~e~lL-Vvda~---tgq~~~~~a~~f~~~v~i~giIlTKl  249 (428)
T TIGR00959       181 NGFDVVIVDTAGRLQI-----DEELMEELAAIKE--ILNPDEILL-VVDAM---TGQDAVNTAKTFNERLGLTGVVLTKL  249 (428)
T ss_pred             cCCCEEEEeCCCcccc-----CHHHHHHHHHHHH--hhCCceEEE-EEecc---chHHHHHHHHHHHhhCCCCEEEEeCc
Confidence            3468999999997642     2344555555543  234665544 45554   35788888888875445677789999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |-
T Consensus       250 D~  251 (428)
T TIGR00959       250 DG  251 (428)
T ss_pred             cC
Confidence            94

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=85.38  E-value=2.1  Score=36.14  Aligned_cols=68  Identities=13%  Similarity=0.244  Sum_probs=42.3

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHH-hhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTD-LVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~-lar~~DP~G~RTIGVlT  146 (294)
                      ...+.++|+||-.             ..+.|...|+++.+.+|+++-..+.+ +.+ ...+. +.+.....+.--+.|.+
T Consensus        42 ~~~~~i~D~~G~~-------------~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~N  108 (167)
T cd04161          42 KYEVCIFDLGGGA-------------NFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLAN  108 (167)
T ss_pred             CEEEEEEECCCcH-------------HHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEe
Confidence            3678999999932             34567789999999877766443322 111 11122 22222334567899999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       109 K~Dl  112 (167)
T cd04161         109 KQDK  112 (167)
T ss_pred             CCCC
Confidence            9985

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=85.13  E-value=2.7  Score=34.15  Aligned_cols=68  Identities=9%  Similarity=0.089  Sum_probs=42.0

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-c--hhcHHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-A--ERSNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~--ans~al~lar~~DP~G~RTIGVlT  146 (294)
                      ...+.++|+||...             ...+...|++..+++|+++...+.+ +  .......+.+..++....-|.|+|
T Consensus        47 ~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~N  113 (164)
T cd04139          47 DVQLNILDTAGQED-------------YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGN  113 (164)
T ss_pred             EEEEEEEECCChhh-------------hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            35689999999432             2356667888888887776543221 1  111222333333455678899999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       114 K~D~  117 (164)
T cd04139         114 KCDL  117 (164)
T ss_pred             cccc
Confidence            9995

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04124 RabL2 RabL2 subfamily

Probab=84.95  E-value=2.4  Score=35.35  Aligned_cols=67  Identities=16%  Similarity=0.107  Sum_probs=43.0

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ...+.|.|+||-.             ....+...|+++.+.+|+++-..+.+ +.+ ...+...++..+ ....|.|.||
T Consensus        48 ~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK  113 (161)
T cd04124          48 TILVDFWDTAGQE-------------RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-EIPCIVVANK  113 (161)
T ss_pred             EEEEEEEeCCCch-------------hhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEC
Confidence            3578899999932             23467888999998777766443321 111 233444555544 3678999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       114 ~Dl  116 (161)
T cd04124         114 IDL  116 (161)
T ss_pred             ccC
Confidence            995

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>TIGR00485 EF-Tu translation elongation factor TU

Probab=84.72  E-value=2.8  Score=41.12  Aligned_cols=80  Identities=18%  Similarity=0.228  Sum_probs=46.7

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLV  131 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~la  131 (294)
                      .+++-+...+..... -..++|+|+||..            +.+.+|+. -+...+.+|| |++|...+.  +.+.+.++
T Consensus        59 rG~Ti~~~~~~~~~~-~~~~~liDtpGh~------------~f~~~~~~-~~~~~D~~il-Vvda~~g~~~qt~e~l~~~  123 (394)
T TIGR00485        59 RGITINTAHVEYETE-NRHYAHVDCPGHA------------DYVKNMIT-GAAQMDGAIL-VVSATDGPMPQTREHILLA  123 (394)
T ss_pred             cCcceeeEEEEEcCC-CEEEEEEECCchH------------HHHHHHHH-HHhhCCEEEE-EEECCCCCcHHHHHHHHHH
Confidence            456666666666543 3468999999953            12334433 2345565555 666664333  33445555


Q ss_pred             hhcCCCCCeEE-EEeccchhh
Q psy8958         132 SQMDPQGKRTI-FVLTKVSQQ  151 (294)
Q Consensus       132 r~~DP~G~RTI-GVlTK~D~~  151 (294)
                      +..   |...| .|+||.|+.
T Consensus       124 ~~~---gi~~iIvvvNK~Dl~  141 (394)
T TIGR00485       124 RQV---GVPYIVVFLNKCDMV  141 (394)
T ss_pred             HHc---CCCEEEEEEEecccC
Confidence            544   55555 689999964

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01862 Rab7 Rab7 subfamily

Probab=84.42  E-value=3.1  Score=34.32  Aligned_cols=67  Identities=10%  Similarity=0.127  Sum_probs=40.1

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchhcHHH--HhhhhcC---CCCCeEEEE
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAERSNVT--DLVSQMD---PQGKRTIFV  144 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~ans~al--~lar~~D---P~G~RTIGV  144 (294)
                      ..|.++|+||..             ....+...|++..+++|+++-..+. .+.+...+  .+.+...   +.+.-.+.|
T Consensus        49 ~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv  115 (172)
T cd01862          49 VTLQIWDTAGQE-------------RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVL  115 (172)
T ss_pred             EEEEEEeCCChH-------------HHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEE
Confidence            458899999942             1235667888888877777644322 11211111  1223333   446678999


Q ss_pred             eccchh
Q psy8958         145 LTKVSQ  150 (294)
Q Consensus       145 lTK~D~  150 (294)
                      +||.|+
T Consensus       116 ~nK~Dl  121 (172)
T cd01862         116 GNKIDL  121 (172)
T ss_pred             EECccc
Confidence            999995

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04176 Rap2 Rap2 subgroup

Probab=84.15  E-value=1.6  Score=35.97  Aligned_cols=67  Identities=16%  Similarity=0.148  Sum_probs=40.6

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHH-hhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTD-LVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~-lar~~DP~G~RTIGVlTK  147 (294)
                      ..|.|.|+||.-             ....|...|+.+...+|++.-..+.. +.+ ...+. +.+.....+...+.|.||
T Consensus        49 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK  115 (163)
T cd04176          49 SVLEILDTAGTE-------------QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNK  115 (163)
T ss_pred             EEEEEEECCCcc-------------cccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            368899999942             22346667888888877766443321 111 11112 222234456778999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       116 ~Dl  118 (163)
T cd04176         116 VDL  118 (163)
T ss_pred             ccc
Confidence            995

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04155 Arl3 Arl3 subfamily

Probab=83.99  E-value=2.5  Score=35.12  Aligned_cols=67  Identities=16%  Similarity=0.256  Sum_probs=39.6

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-c-HHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-S-NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s-~al~lar~~DP~G~RTIGVlTK  147 (294)
                      .++.++|+||..             ....++..|+++.+.+|+++-..+.. +.. . ....+.+.....+.-.+.|++|
T Consensus        58 ~~~~~~D~~G~~-------------~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  124 (173)
T cd04155          58 FKLNVWDIGGQR-------------AIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANK  124 (173)
T ss_pred             EEEEEEECCCCH-------------HHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEEC
Confidence            568999999942             24466778888888776655433311 111 1 1112223323345678899999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       125 ~D~  127 (173)
T cd04155         125 QDL  127 (173)
T ss_pred             CCC
Confidence            995

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=83.96  E-value=1.5  Score=40.31  Aligned_cols=64  Identities=14%  Similarity=0.318  Sum_probs=38.8

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..++|+|+||....             ...+..++..-+.+|+ |++++...  .+...++.++   -.|...+.|+||.
T Consensus        64 ~~i~liDtPG~~~f-------------~~~~~~~l~~aD~~i~-Vvd~~~g~~~~~~~~~~~~~---~~~~p~iivvNK~  126 (268)
T cd04170          64 HKINLIDTPGYADF-------------VGETRAALRAADAALV-VVSAQSGVEVGTEKLWEFAD---EAGIPRIIFINKM  126 (268)
T ss_pred             EEEEEEECcCHHHH-------------HHHHHHHHHHCCEEEE-EEeCCCCCCHHHHHHHHHHH---HcCCCEEEEEECC
Confidence            46899999996421             1234455666665555 44555432  2334444444   3467788999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       127 D~~  129 (268)
T cd04170         127 DRE  129 (268)
T ss_pred             ccC
Confidence            963

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK12736 elongation factor Tu; Reviewed

Probab=83.74  E-value=3.8  Score=40.28  Aligned_cols=80  Identities=15%  Similarity=0.211  Sum_probs=46.8

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLV  131 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~la  131 (294)
                      .++|-+...+.... +-..++|||+||..            +.+.+|+... ...+.+ |.|++|...+.  +.+.+.++
T Consensus        59 rg~T~~~~~~~~~~-~~~~i~~iDtPGh~------------~f~~~~~~~~-~~~d~~-llVvd~~~g~~~~t~~~~~~~  123 (394)
T PRK12736         59 RGITINTAHVEYET-EKRHYAHVDCPGHA------------DYVKNMITGA-AQMDGA-ILVVAATDGPMPQTREHILLA  123 (394)
T ss_pred             cCccEEEEeeEecC-CCcEEEEEECCCHH------------HHHHHHHHHH-hhCCEE-EEEEECCCCCchhHHHHHHHH
Confidence            34555555555443 34578999999942            3344444433 345544 45666765443  33455666


Q ss_pred             hhcCCCCCe-EEEEeccchhh
Q psy8958         132 SQMDPQGKR-TIFVLTKVSQQ  151 (294)
Q Consensus       132 r~~DP~G~R-TIGVlTK~D~~  151 (294)
                      +..   |.. -|-|+||.|+.
T Consensus       124 ~~~---g~~~~IvviNK~D~~  141 (394)
T PRK12736        124 RQV---GVPYLVVFLNKVDLV  141 (394)
T ss_pred             HHc---CCCEEEEEEEecCCc
Confidence            655   555 56889999963

>CHL00071 tufA elongation factor Tu

Probab=83.72  E-value=4  Score=40.34  Aligned_cols=80  Identities=15%  Similarity=0.187  Sum_probs=46.3

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc--HHHHhh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS--NVTDLV  131 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans--~al~la  131 (294)
                      .+++-+........ +-..++|||+||.-            +.+..|+... ...+ +++.|++|...+..+  +.+.++
T Consensus        59 rg~T~~~~~~~~~~-~~~~~~~iDtPGh~------------~~~~~~~~~~-~~~D-~~ilVvda~~g~~~qt~~~~~~~  123 (409)
T CHL00071         59 RGITINTAHVEYET-ENRHYAHVDCPGHA------------DYVKNMITGA-AQMD-GAILVVSAADGPMPQTKEHILLA  123 (409)
T ss_pred             CCEeEEccEEEEcc-CCeEEEEEECCChH------------HHHHHHHHHH-HhCC-EEEEEEECCCCCcHHHHHHHHHH
Confidence            44554444444332 33568999999942            3455554443 3455 445566676555433  445555


Q ss_pred             hhcCCCCCe-EEEEeccchhh
Q psy8958         132 SQMDPQGKR-TIFVLTKVSQQ  151 (294)
Q Consensus       132 r~~DP~G~R-TIGVlTK~D~~  151 (294)
                      +..   |.. -|.|+||.|+.
T Consensus       124 ~~~---g~~~iIvvvNK~D~~  141 (409)
T CHL00071        124 KQV---GVPNIVVFLNKEDQV  141 (409)
T ss_pred             HHc---CCCEEEEEEEccCCC
Confidence            544   554 67899999964

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=83.55  E-value=2.8  Score=35.55  Aligned_cols=63  Identities=19%  Similarity=0.317  Sum_probs=33.5

Q ss_pred             EEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958          75 LVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus        75 LVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                      ++|+||.....    +    ...+.|+ .+++..+.+|+ |++++....... ..+. ++.+ +.-.|+|++|.|+
T Consensus        41 ~iDtpG~~~~~----~----~~~~~~~-~~~~~ad~il~-v~d~~~~~s~~~-~~~~-~~~~-~~~ii~v~nK~Dl  103 (158)
T PRK15467         41 DIDTPGEYFSH----P----RWYHALI-TTLQDVDMLIY-VHGANDPESRLP-AGLL-DIGV-SKRQIAVISKTDM  103 (158)
T ss_pred             cccCCccccCC----H----HHHHHHH-HHHhcCCEEEE-EEeCCCcccccC-HHHH-hccC-CCCeEEEEEcccc
Confidence            69999975322    1    2234443 34667776655 455543211111 1122 2222 4558999999995

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=83.48  E-value=2.9  Score=39.52  Aligned_cols=70  Identities=16%  Similarity=0.223  Sum_probs=40.0

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      -.++.|||+||-.+..     ....+...+++.  ..+|.- ++.|++|+.  ..+++.+.++.+.+-+- +=-|+||.|
T Consensus       154 ~~D~ViIDt~Gr~~~~-----~~~l~el~~~~~--~~~~~~-~~LVl~a~~--~~~d~~~~~~~f~~~~~-~~~I~TKlD  222 (270)
T PRK06731        154 RVDYILIDTAGKNYRA-----SETVEEMIETMG--QVEPDY-ICLTLSASM--KSKDMIEIITNFKDIHI-DGIVFTKFD  222 (270)
T ss_pred             CCCEEEEECCCCCcCC-----HHHHHHHHHHHh--hhCCCe-EEEEEcCcc--CHHHHHHHHHHhCCCCC-CEEEEEeec
Confidence            3689999999975422     223333333333  224543 455555553  23556667777766433 345899998


Q ss_pred             h
Q psy8958         150 Q  150 (294)
Q Consensus       150 ~  150 (294)
                      -
T Consensus       223 e  223 (270)
T PRK06731        223 E  223 (270)
T ss_pred             C
Confidence            4

>PRK04004 translation initiation factor IF-2; Validated

Probab=83.47  E-value=2.9  Score=43.62  Aligned_cols=64  Identities=11%  Similarity=0.215  Sum_probs=41.0

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      |.++|+|+||.-             ....|...++...+.+|| |++++..+  .+-+++++++.   .+...|-|+||+
T Consensus        71 ~~i~~iDTPG~e-------------~f~~~~~~~~~~aD~~Il-VvDa~~g~~~qt~e~i~~~~~---~~vpiIvviNK~  133 (586)
T PRK04004         71 PGLLFIDTPGHE-------------AFTNLRKRGGALADIAIL-VVDINEGFQPQTIEAINILKR---RKTPFVVAANKI  133 (586)
T ss_pred             CCEEEEECCChH-------------HHHHHHHHhHhhCCEEEE-EEECCCCCCHhHHHHHHHHHH---cCCCEEEEEECc
Confidence            458999999953             123455567777775555 55565433  23344555554   456799999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       134 D~~  136 (586)
T PRK04004        134 DRI  136 (586)
T ss_pred             CCc
Confidence            963

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=83.28  E-value=2.7  Score=42.48  Aligned_cols=69  Identities=19%  Similarity=0.264  Sum_probs=41.7

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                      .++.|||+||-...     .......+..++..  ..|..++|+ ++|+  ...+++...++.+..-+ =+=.|+||.|-
T Consensus       321 ~DvVLIDTaGRs~k-----d~~lm~EL~~~lk~--~~PdevlLV-LsAT--tk~~d~~~i~~~F~~~~-idglI~TKLDE  389 (436)
T PRK11889        321 VDYILIDTAGKNYR-----ASETVEEMIETMGQ--VEPDYICLT-LSAS--MKSKDMIEIITNFKDIH-IDGIVFTKFDE  389 (436)
T ss_pred             CCEEEEeCccccCc-----CHHHHHHHHHHHhh--cCCCeEEEE-ECCc--cChHHHHHHHHHhcCCC-CCEEEEEcccC
Confidence            58999999997542     23334444444443  235555555 5654  23456667777777643 34459999983

>cd04116 Rab9 Rab9 subfamily

Probab=83.27  E-value=3.3  Score=34.40  Aligned_cols=69  Identities=9%  Similarity=0.106  Sum_probs=41.4

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhcH-H----HHhhhhcCCCCCeEE
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERSN-V----TDLVSQMDPQGKRTI  142 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans~-a----l~lar~~DP~G~RTI  142 (294)
                      ....|.|+|+||-             +..+.|...|++..+++|++....+.+ +.+-. .    ++.+....+.+--.|
T Consensus        52 ~~~~l~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pii  118 (170)
T cd04116          52 HFVTLQIWDTAGQ-------------ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV  118 (170)
T ss_pred             eEEEEEEEeCCCh-------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEE
Confidence            3457889999992             234567888999888877665433322 22111 1    111212224556678


Q ss_pred             EEeccchh
Q psy8958         143 FVLTKVSQ  150 (294)
Q Consensus       143 GVlTK~D~  150 (294)
                      -|.||.|+
T Consensus       119 lv~nK~Dl  126 (170)
T cd04116         119 VLGNKNDI  126 (170)
T ss_pred             EEEECccc
Confidence            99999995

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PRK10218 GTP-binding protein; Provisional

Probab=83.24  E-value=2.8  Score=44.00  Aligned_cols=78  Identities=22%  Similarity=0.225  Sum_probs=48.5

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhhh
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLVS  132 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~lar  132 (294)
                      +++-..-...+... -..+.|+|+||....             ...+..|++..+.+||+| +|.....  +..+++.+.
T Consensus        53 GiTi~~~~~~i~~~-~~~inliDTPG~~df-------------~~~v~~~l~~aDg~ILVV-Da~~G~~~qt~~~l~~a~  117 (607)
T PRK10218         53 GITILAKNTAIKWN-DYRINIVDTPGHADF-------------GGEVERVMSMVDSVLLVV-DAFDGPMPQTRFVTKKAF  117 (607)
T ss_pred             ceEEEEEEEEEecC-CEEEEEEECCCcchh-------------HHHHHHHHHhCCEEEEEE-ecccCccHHHHHHHHHHH
Confidence            34433333333333 357999999995421             235677888888777655 4444333  344555555


Q ss_pred             hcCCCCCeEEEEeccchh
Q psy8958         133 QMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       133 ~~DP~G~RTIGVlTK~D~  150 (294)
                      +   .|...|.|++|.|+
T Consensus       118 ~---~gip~IVviNKiD~  132 (607)
T PRK10218        118 A---YGLKPIVVINKVDR  132 (607)
T ss_pred             H---cCCCEEEEEECcCC
Confidence            5   46778999999995

>PRK00007 elongation factor G; Reviewed

Probab=83.20  E-value=2.7  Score=44.57  Aligned_cols=81  Identities=14%  Similarity=0.144  Sum_probs=46.6

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhc
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQM  134 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~  134 (294)
                      ++|-+...+.+... -..++|||+||...        ...+.     ..-+..-+ .++.|++|...+..++ ..+++.+
T Consensus        60 g~ti~~~~~~~~~~-~~~~~liDTPG~~~--------f~~ev-----~~al~~~D-~~vlVvda~~g~~~qt-~~~~~~~  123 (693)
T PRK00007         60 GITITSAATTCFWK-DHRINIIDTPGHVD--------FTIEV-----ERSLRVLD-GAVAVFDAVGGVEPQS-ETVWRQA  123 (693)
T ss_pred             CCCEeccEEEEEEC-CeEEEEEeCCCcHH--------HHHHH-----HHHHHHcC-EEEEEEECCCCcchhh-HHHHHHH
Confidence            44444444444333 34799999999643        12222     22222234 4555667776654443 3444455


Q ss_pred             CCCCCeEEEEeccchhh
Q psy8958         135 DPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       135 DP~G~RTIGVlTK~D~~  151 (294)
                      ...|...|-+++|+|+.
T Consensus       124 ~~~~~p~iv~vNK~D~~  140 (693)
T PRK00007        124 DKYKVPRIAFVNKMDRT  140 (693)
T ss_pred             HHcCCCEEEEEECCCCC
Confidence            55678889999999964

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=83.04  E-value=2.4  Score=45.90  Aligned_cols=63  Identities=13%  Similarity=0.289  Sum_probs=42.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..++|+|+||...             ...|...+....+.+||+| +|+..  ..+.++++.++.   .+...|.|+||+
T Consensus       337 ~~ItfiDTPGhe~-------------F~~m~~rga~~aDiaILVV-dAddGv~~qT~e~i~~a~~---~~vPiIVviNKi  399 (787)
T PRK05306        337 GKITFLDTPGHEA-------------FTAMRARGAQVTDIVVLVV-AADDGVMPQTIEAINHAKA---AGVPIIVAINKI  399 (787)
T ss_pred             EEEEEEECCCCcc-------------chhHHHhhhhhCCEEEEEE-ECCCCCCHhHHHHHHHHHh---cCCcEEEEEECc
Confidence            4699999999532             1346667777777676655 55532  234455555554   456799999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       400 Dl  401 (787)
T PRK05306        400 DK  401 (787)
T ss_pred             cc
Confidence            96

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=83.03  E-value=3.1  Score=42.74  Aligned_cols=73  Identities=16%  Similarity=0.319  Sum_probs=39.5

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-----cch-hcHH-HHhhhhcC--------
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-----DAE-RSNV-TDLVSQMD--------  135 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-----D~a-ns~a-l~lar~~D--------  135 (294)
                      ..++|+|+||++..+..+     ...-.. ..+|+++.. +|+.|++++.     |.- ..+. .+....+.        
T Consensus       206 ~~f~laDtPGliegas~g-----~gLg~~-fLrhierad-vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~  278 (500)
T PRK12296        206 TRFTVADVPGLIPGASEG-----KGLGLD-FLRHIERCA-VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLG  278 (500)
T ss_pred             eEEEEEECCCCccccchh-----hHHHHH-HHHHHHhcC-EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccch
Confidence            369999999998655322     111112 234555555 5556666642     211 1111 11222232        


Q ss_pred             ---CCCCeEEEEeccchh
Q psy8958         136 ---PQGKRTIFVLTKVSQ  150 (294)
Q Consensus       136 ---P~G~RTIGVlTK~D~  150 (294)
                         ..+.-.|-|++|.|+
T Consensus       279 ~~~l~~kP~IVVlNKiDL  296 (500)
T PRK12296        279 LGDLAERPRLVVLNKIDV  296 (500)
T ss_pred             hhhhcCCCEEEEEECccc
Confidence               235678999999995

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=83.00  E-value=3  Score=36.93  Aligned_cols=68  Identities=16%  Similarity=0.305  Sum_probs=41.2

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCC-CceEEEeccCCCcchhcHHH----Hhh--hhcCCCCCeEEE
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNP-NAIILCIQDGSVDAERSNVT----DLV--SQMDPQGKRTIF  143 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p-~sIILaV~~a~~D~ans~al----~la--r~~DP~G~RTIG  143 (294)
                      ..+.|+|+||..+             .+.+...|++.. .+||++|-+.+..-.-.++.    .+-  ...-+.+...|.
T Consensus        48 ~~~~l~D~pG~~~-------------~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvli  114 (203)
T cd04105          48 KKFRLVDVPGHPK-------------LRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLI  114 (203)
T ss_pred             ceEEEEECCCCHH-------------HHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEE
Confidence            4699999999432             356667788887 77776665555310111111    111  112235789999


Q ss_pred             Eeccchhh
Q psy8958         144 VLTKVSQQ  151 (294)
Q Consensus       144 VlTK~D~~  151 (294)
                      |.+|.|+.
T Consensus       115 v~NK~Dl~  122 (203)
T cd04105         115 ACNKQDLF  122 (203)
T ss_pred             Eecchhhc
Confidence            99999964

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PLN03118 Rab family protein; Provisional

Probab=82.95  E-value=3  Score=36.65  Aligned_cols=76  Identities=20%  Similarity=0.204  Sum_probs=43.8

Q ss_pred             eEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhcH--HHHhhhhcCC-
Q psy8958          61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERSN--VTDLVSQMDP-  136 (294)
Q Consensus        61 I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans~--al~lar~~DP-  136 (294)
                      ..+.+.+. ...|.|+|+||...             ...|...|++.-+++||++-..+.+ +.+-.  .......+.+ 
T Consensus        53 ~~~~~~~~-~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~  118 (211)
T PLN03118         53 KQLTVGGK-RLKLTIWDTAGQER-------------FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTN  118 (211)
T ss_pred             EEEEECCE-EEEEEEEECCCchh-------------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCC
Confidence            34444332 34689999999322             2456678888888877776544321 11111  1122333332 


Q ss_pred             CCCeEEEEeccchh
Q psy8958         137 QGKRTIFVLTKVSQ  150 (294)
Q Consensus       137 ~G~RTIGVlTK~D~  150 (294)
                      .+.-.|.|.||.|+
T Consensus       119 ~~~~~ilv~NK~Dl  132 (211)
T PLN03118        119 QDCVKMLVGNKVDR  132 (211)
T ss_pred             CCCCEEEEEECccc
Confidence            34567899999995

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=82.94  E-value=3.4  Score=41.55  Aligned_cols=79  Identities=16%  Similarity=0.308  Sum_probs=46.9

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc---------hh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA---------ER  124 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~---------an  124 (294)
                      .++|-+.-...... +--.++|||+||..            +.+.+|+.. +...+..|| |++|...+         .+
T Consensus        69 rGiTid~~~~~~~~-~~~~i~lIDtPGh~------------~f~~~~~~g-~~~aD~ail-VVda~~G~~e~~~~~~~qT  133 (446)
T PTZ00141         69 RGITIDIALWKFET-PKYYFTIIDAPGHR------------DFIKNMITG-TSQADVAIL-VVASTAGEFEAGISKDGQT  133 (446)
T ss_pred             cCEeEEeeeEEEcc-CCeEEEEEECCChH------------HHHHHHHHh-hhhcCEEEE-EEEcCCCceecccCCCccH
Confidence            34555544444433 34578999999932            334455443 355665555 56665443         34


Q ss_pred             cHHHHhhhhcCCCCCe-EEEEeccchh
Q psy8958         125 SNVTDLVSQMDPQGKR-TIFVLTKVSQ  150 (294)
Q Consensus       125 s~al~lar~~DP~G~R-TIGVlTK~D~  150 (294)
                      .+.+.+|+.+   |-+ -|-+|||.|.
T Consensus       134 ~eh~~~~~~~---gi~~iiv~vNKmD~  157 (446)
T PTZ00141        134 REHALLAFTL---GVKQMIVCINKMDD  157 (446)
T ss_pred             HHHHHHHHHc---CCCeEEEEEEcccc
Confidence            4556666655   655 5689999994

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=82.93  E-value=3.7  Score=34.93  Aligned_cols=70  Identities=16%  Similarity=0.264  Sum_probs=39.6

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      -.++.++|+||....     ..+....+..+.. . ..+..++|+ +++..   ..++++.++++-....-+-.|+||+|
T Consensus        82 ~~d~viiDt~g~~~~-----~~~~l~~l~~l~~-~-~~~~~~~lV-v~~~~---~~~~~~~~~~~~~~~~~~~viltk~D  150 (173)
T cd03115          82 NFDVVIVDTAGRLQI-----DENLMEELKKIKR-V-VKPDEVLLV-VDAMT---GQDAVNQAKAFNEALGITGVILTKLD  150 (173)
T ss_pred             CCCEEEEECcccchh-----hHHHHHHHHHHHh-h-cCCCeEEEE-EECCC---ChHHHHHHHHHHhhCCCCEEEEECCc
Confidence            457899999997643     1234444444432 2 235555554 44442   23444555555322225788999998


Q ss_pred             h
Q psy8958         150 Q  150 (294)
Q Consensus       150 ~  150 (294)
                      .
T Consensus       151 ~  151 (173)
T cd03115         151 G  151 (173)
T ss_pred             C
Confidence            4

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=82.74  E-value=3.3  Score=41.51  Aligned_cols=70  Identities=10%  Similarity=0.228  Sum_probs=41.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                      .++.|||+||....     .....+.+..++.. ...+-. +..|++|+.  ...+..+.++.+...+. +=.|+||+|-
T Consensus       300 ~DlVlIDt~G~~~~-----d~~~~~~L~~ll~~-~~~~~~-~~LVl~a~~--~~~~l~~~~~~f~~~~~-~~vI~TKlDe  369 (424)
T PRK05703        300 CDVILIDTAGRSQR-----DKRLIEELKALIEF-SGEPID-VYLVLSATT--KYEDLKDIYKHFSRLPL-DGLIFTKLDE  369 (424)
T ss_pred             CCEEEEeCCCCCCC-----CHHHHHHHHHHHhc-cCCCCe-EEEEEECCC--CHHHHHHHHHHhCCCCC-CEEEEecccc
Confidence            69999999998532     23345556666662 223433 345566654  23344455566665543 3468999984

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=82.38  E-value=2.6  Score=42.31  Aligned_cols=69  Identities=14%  Similarity=0.248  Sum_probs=38.8

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                      .++.|||+||..+..     .+..+.+..+... + +|.-+ +.|.+++.  ..+++.+.++.+..-+- +=.|+||.|-
T Consensus       286 ~D~VLIDTAGr~~~d-----~~~l~EL~~l~~~-~-~p~~~-~LVLsag~--~~~d~~~i~~~f~~l~i-~glI~TKLDE  354 (407)
T PRK12726        286 VDHILIDTVGRNYLA-----EESVSEISAYTDV-V-HPDLT-CFTFSSGM--KSADVMTILPKLAEIPI-DGFIITKMDE  354 (407)
T ss_pred             CCEEEEECCCCCccC-----HHHHHHHHHHhhc-c-CCceE-EEECCCcc--cHHHHHHHHHhcCcCCC-CEEEEEcccC
Confidence            589999999976521     2333333333321 2 44433 44666643  33455566666665433 3447999983

>PLN03108 Rab family protein; Provisional

Probab=82.26  E-value=3.7  Score=36.34  Aligned_cols=75  Identities=9%  Similarity=0.129  Sum_probs=43.9

Q ss_pred             EEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-hhc-HHHHhhhhcCCCCC
Q psy8958          62 SMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-ERS-NVTDLVSQMDPQGK  139 (294)
Q Consensus        62 ~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-ans-~al~lar~~DP~G~  139 (294)
                      .+.+.+..+ .|.|+|+||..             ....+...|+.....+|+++-..+.+. .+. ..+...+.......
T Consensus        47 ~i~~~~~~i-~l~l~Dt~G~~-------------~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~  112 (210)
T PLN03108         47 MITIDNKPI-KLQIWDTAGQE-------------SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM  112 (210)
T ss_pred             EEEECCEEE-EEEEEeCCCcH-------------HHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCC
Confidence            344544433 68999999932             233466778887777776665443221 111 12223333333456


Q ss_pred             eEEEEeccchh
Q psy8958         140 RTIFVLTKVSQ  150 (294)
Q Consensus       140 RTIGVlTK~D~  150 (294)
                      ..|.|.+|.|+
T Consensus       113 piiiv~nK~Dl  123 (210)
T PLN03108        113 TIMLIGNKCDL  123 (210)
T ss_pred             cEEEEEECccC
Confidence            78999999995

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=82.24  E-value=2.8  Score=35.29  Aligned_cols=75  Identities=16%  Similarity=0.228  Sum_probs=45.0

Q ss_pred             EEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCC
Q psy8958          62 SMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQG  138 (294)
Q Consensus        62 ~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G  138 (294)
                      .+.+.+ ....+.|+|+||.-.             ...+-..|+++.+++|++.-..+.+ +.+.  ..+...+...+ +
T Consensus        40 ~~~~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~-~  104 (173)
T cd04130          40 VVLVDG-KPVRLQLCDTAGQDE-------------FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP-K  104 (173)
T ss_pred             EEEECC-EEEEEEEEECCCChh-------------hccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C
Confidence            444544 235789999999622             2234456888888887776443321 3222  23444444333 4


Q ss_pred             CeEEEEeccchhh
Q psy8958         139 KRTIFVLTKVSQQ  151 (294)
Q Consensus       139 ~RTIGVlTK~D~~  151 (294)
                      .-.|.|.||.|+.
T Consensus       105 ~piilv~nK~Dl~  117 (173)
T cd04130         105 APIILVGTQADLR  117 (173)
T ss_pred             CCEEEEeeChhhc
Confidence            6789999999963

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=82.20  E-value=3.6  Score=34.85  Aligned_cols=67  Identities=18%  Similarity=0.244  Sum_probs=39.5

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||..             ..+.+...|++..+.+|+++-..+.+ +..  ....++.+..+-...-.+.|+||
T Consensus        59 ~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK  125 (174)
T cd04153          59 IRFLMWDIGGQE-------------SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANK  125 (174)
T ss_pred             eEEEEEECCCCH-------------HHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEEC
Confidence            569999999952             23455667888888777665443321 111  11222222222234567999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       126 ~Dl  128 (174)
T cd04153         126 QDL  128 (174)
T ss_pred             CCC
Confidence            995

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04136 Rap_like Rap-like subfamily

Probab=82.18  E-value=3.3  Score=33.82  Aligned_cols=68  Identities=13%  Similarity=0.172  Sum_probs=40.8

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc-HHHHhhhhc-CCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS-NVTDLVSQM-DPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans-~al~lar~~-DP~G~RTIGVlT  146 (294)
                      ...|.|+|+||..+             .+.|...|++..+.++|++...+.+ +.+. ..++...+. ...+.--|.|.|
T Consensus        48 ~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  114 (163)
T cd04136          48 QCMLEILDTAGTEQ-------------FTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGN  114 (163)
T ss_pred             EEEEEEEECCCccc-------------cchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            35688999999532             2356677888888887776543321 1111 112223322 334566788999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       115 K~Dl  118 (163)
T cd04136         115 KCDL  118 (163)
T ss_pred             Cccc
Confidence            9995

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04118 Rab24 Rab24 subfamily

Probab=82.14  E-value=3.3  Score=35.37  Aligned_cols=64  Identities=16%  Similarity=0.157  Sum_probs=39.5

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc----HHHHhhhhcCCCCCeEEEEec
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS----NVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans----~al~lar~~DP~G~RTIGVlT  146 (294)
                      ..|.++|+||..+             .+.+...|+.+.+.+|+++ +.+ |...-    ..++..+...+ +...|.|.|
T Consensus        50 ~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~iilv~-d~~-~~~s~~~~~~~~~~i~~~~~-~~piilv~n  113 (193)
T cd04118          50 VTLGIWDTAGSER-------------YEAMSRIYYRGAKAAIVCY-DLT-DSSSFERAKFWVKELQNLEE-HCKIYLCGT  113 (193)
T ss_pred             EEEEEEECCCchh-------------hhhhhHhhcCCCCEEEEEE-ECC-CHHHHHHHHHHHHHHHhcCC-CCCEEEEEE
Confidence            4578999999422             2355667887777666555 333 22211    23344455544 467899999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       114 K~Dl  117 (193)
T cd04118         114 KSDL  117 (193)
T ss_pred             cccc
Confidence            9995

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=81.93  E-value=3.5  Score=41.85  Aligned_cols=64  Identities=22%  Similarity=0.262  Sum_probs=38.2

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-ch--hcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AE--RSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~a--ns~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      .++|||+||.            .+.+++|+..- .....++| |++|+.. ..  +-+.+.++....-  .+-|-||||.
T Consensus       118 ~i~~IDtPGH------------~~fi~~m~~g~-~~~D~alL-VVda~~g~~~~qT~ehl~i~~~lgi--~~iIVvlNKi  181 (460)
T PTZ00327        118 HVSFVDCPGH------------DILMATMLNGA-AVMDAALL-LIAANESCPQPQTSEHLAAVEIMKL--KHIIILQNKI  181 (460)
T ss_pred             eEeeeeCCCH------------HHHHHHHHHHH-hhCCEEEE-EEECCCCccchhhHHHHHHHHHcCC--CcEEEEEecc
Confidence            6899999993            24455655543 34554544 6666542 23  3344555554432  3568899999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       182 Dlv  184 (460)
T PTZ00327        182 DLV  184 (460)
T ss_pred             ccc
Confidence            964

>PRK13351 elongation factor G; Reviewed

Probab=81.78  E-value=1.9  Score=45.36  Aligned_cols=65  Identities=17%  Similarity=0.296  Sum_probs=42.5

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~RTIGVlTK  147 (294)
                      -..+.|+|+||...             ...++..|++.-+.+|| |++++...  .+...++.+   +..+...|.|+||
T Consensus        72 ~~~i~liDtPG~~d-------------f~~~~~~~l~~aD~~il-Vvd~~~~~~~~~~~~~~~~---~~~~~p~iiviNK  134 (687)
T PRK13351         72 NHRINLIDTPGHID-------------FTGEVERSLRVLDGAVV-VFDAVTGVQPQTETVWRQA---DRYGIPRLIFINK  134 (687)
T ss_pred             CEEEEEEECCCcHH-------------HHHHHHHHHHhCCEEEE-EEeCCCCCCHHHHHHHHHH---HhcCCCEEEEEEC
Confidence            35799999999642             22456778887787666 44555433  233344444   4446788999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      .|+.
T Consensus       135 ~D~~  138 (687)
T PRK13351        135 MDRV  138 (687)
T ss_pred             CCCC
Confidence            9964

>cd04110 Rab35 Rab35 subfamily

Probab=81.69  E-value=4  Score=35.56  Aligned_cols=66  Identities=14%  Similarity=0.123  Sum_probs=39.9

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..|.|+|+||-             +....+...|+.+.+.||+++-..+.+ +.. ...+...+...+ ...-+.|.||.
T Consensus        55 ~~l~l~D~~G~-------------~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~  120 (199)
T cd04110          55 VKLQIWDTAGQ-------------ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKN  120 (199)
T ss_pred             EEEEEEeCCCc-------------hhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECc
Confidence            46899999993             223467788999888777665443321 110 112233333333 35568899999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       121 Dl  122 (199)
T cd04110         121 DD  122 (199)
T ss_pred             cc
Confidence            95

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PRK12740 elongation factor G; Reviewed

Probab=81.63  E-value=1.9  Score=45.19  Aligned_cols=66  Identities=14%  Similarity=0.241  Sum_probs=40.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                      ..++|||+||...             ....+..++.....+|++ ++++.+...+ ...+.+.+...|...|.|+||.|+
T Consensus        60 ~~i~liDtPG~~~-------------~~~~~~~~l~~aD~vllv-vd~~~~~~~~-~~~~~~~~~~~~~p~iiv~NK~D~  124 (668)
T PRK12740         60 HKINLIDTPGHVD-------------FTGEVERALRVLDGAVVV-VCAVGGVEPQ-TETVWRQAEKYGVPRIIFVNKMDR  124 (668)
T ss_pred             EEEEEEECCCcHH-------------HHHHHHHHHHHhCeEEEE-EeCCCCcCHH-HHHHHHHHHHcCCCEEEEEECCCC
Confidence            5799999999642             122345566677755555 4555444322 223333333457889999999996


Q ss_pred             h
Q psy8958         151 Q  151 (294)
Q Consensus       151 ~  151 (294)
                      .
T Consensus       125 ~  125 (668)
T PRK12740        125 A  125 (668)
T ss_pred             C
Confidence            4

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=81.54  E-value=1.8  Score=42.88  Aligned_cols=62  Identities=16%  Similarity=0.196  Sum_probs=34.9

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCC---CCceEEEeccCCCcc---hhcHHHHhhhhcCCCCCeEEEE
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSN---PNAIILCIQDGSVDA---ERSNVTDLVSQMDPQGKRTIFV  144 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~---p~sIILaV~~a~~D~---ans~al~lar~~DP~G~RTIGV  144 (294)
                      ..++|+|+||-.                +++..|+..   .. .++.|++|....   .+.+.+.+++...  ....|-|
T Consensus        85 ~~i~liDtPG~~----------------~f~~~~~~~~~~~D-~~llVVDa~~~~~~~~t~~~l~~l~~~~--i~~iiVV  145 (411)
T PRK04000         85 RRVSFVDAPGHE----------------TLMATMLSGAALMD-GAILVIAANEPCPQPQTKEHLMALDIIG--IKNIVIV  145 (411)
T ss_pred             cEEEEEECCCHH----------------HHHHHHHHHHhhCC-EEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEE
Confidence            468999999921                233333333   34 445566666432   2233444554332  1347899


Q ss_pred             eccchhh
Q psy8958         145 LTKVSQQ  151 (294)
Q Consensus       145 lTK~D~~  151 (294)
                      +||.|+.
T Consensus       146 lNK~Dl~  152 (411)
T PRK04000        146 QNKIDLV  152 (411)
T ss_pred             EEeeccc
Confidence            9999963

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=81.34  E-value=5.5  Score=41.65  Aligned_cols=80  Identities=14%  Similarity=0.231  Sum_probs=45.6

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchh--cHHHHhhh
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAER--SNVTDLVS  132 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~an--s~al~lar  132 (294)
                      +++-+.-......+ -..++|||+||..            +.+.+|+.. +.....+ |.|++|+..+..  .+.+.+++
T Consensus        89 g~Tid~~~~~~~~~-~~~~~liDtPG~~------------~f~~~~~~~-~~~aD~~-llVvda~~g~~~~t~e~~~~~~  153 (632)
T PRK05506         89 GITIDVAYRYFATP-KRKFIVADTPGHE------------QYTRNMVTG-ASTADLA-IILVDARKGVLTQTRRHSFIAS  153 (632)
T ss_pred             CcCceeeeeEEccC-CceEEEEECCChH------------HHHHHHHHH-HHhCCEE-EEEEECCCCccccCHHHHHHHH
Confidence            44444433333333 3468999999942            234445443 4555544 556677654433  34566666


Q ss_pred             hcCCCCCeEEEEeccchhh
Q psy8958         133 QMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       133 ~~DP~G~RTIGVlTK~D~~  151 (294)
                      ....  ..-|-|+||+|+.
T Consensus       154 ~~~~--~~iivvvNK~D~~  170 (632)
T PRK05506        154 LLGI--RHVVLAVNKMDLV  170 (632)
T ss_pred             HhCC--CeEEEEEEecccc
Confidence            6521  3456789999963

>cd00876 Ras Ras family

Probab=81.32  E-value=3.9  Score=33.02  Aligned_cols=68  Identities=10%  Similarity=0.110  Sum_probs=41.5

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhhhhcCC-CCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLVSQMDP-QGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~lar~~DP-~G~RTIGVlT  146 (294)
                      ...+.++|+||...             ...+...+++.-+.+|+++-..+.+..  ............+ .+.-.+.|+|
T Consensus        46 ~~~~~l~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n  112 (160)
T cd00876          46 TYTLDILDTAGQEE-------------FSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGN  112 (160)
T ss_pred             EEEEEEEECCChHH-------------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence            35688999999432             445666777877877776654443211  1112222333322 5688999999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       113 K~D~  116 (160)
T cd00876         113 KCDL  116 (160)
T ss_pred             CCcc
Confidence            9995

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG2486|consensus

Probab=81.07  E-value=1.5  Score=42.32  Aligned_cols=75  Identities=17%  Similarity=0.188  Sum_probs=43.9

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEE--eccCCCcchhcHH--HHhhhhcCCCCCeEEEEec
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILC--IQDGSVDAERSNV--TDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILa--V~~a~~D~ans~a--l~lar~~DP~G~RTIGVlT  146 (294)
                      -.+++|||||+-....+.   +..+.-.+|++.|..+..+.+-+  .++|.+-+.+.+.  .+++-+   .+-=-.-|+|
T Consensus       183 ~~~~~vDlPG~~~a~y~~---~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge---~~VP~t~vfT  256 (320)
T KOG2486|consen  183 KSWYEVDLPGYGRAGYGF---ELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE---NNVPMTSVFT  256 (320)
T ss_pred             ceEEEEecCCcccccCCc---cCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh---cCCCeEEeee
Confidence            468999999966554432   23344567888888876554322  3344443333332  233333   3344567999


Q ss_pred             cchhh
Q psy8958         147 KVSQQ  151 (294)
Q Consensus       147 K~D~~  151 (294)
                      |||..
T Consensus       257 K~DK~  261 (320)
T KOG2486|consen  257 KCDKQ  261 (320)
T ss_pred             hhhhh
Confidence            99964

>cd04149 Arf6 Arf6 subfamily

Probab=81.05  E-value=3.2  Score=35.19  Aligned_cols=67  Identities=10%  Similarity=0.214  Sum_probs=40.7

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|.|+||..             ..+.+...|++..+.+|+++-..+.+ +.+.  ...++.+.....+..-+-|.+|
T Consensus        53 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK  119 (168)
T cd04149          53 VKFNVWDVGGQD-------------KIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANK  119 (168)
T ss_pred             EEEEEEECCCCH-------------HHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEEC
Confidence            569999999952             23456677889888777766554421 2111  1112222222234678999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       120 ~Dl  122 (168)
T cd04149         120 QDL  122 (168)
T ss_pred             cCC
Confidence            995

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04127 Rab27A Rab27a subfamily

Probab=80.95  E-value=5.9  Score=33.17  Aligned_cols=68  Identities=12%  Similarity=0.125  Sum_probs=40.3

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc---HHHHhhhhcC-CCCCeEEEEe
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS---NVTDLVSQMD-PQGKRTIFVL  145 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans---~al~lar~~D-P~G~RTIGVl  145 (294)
                      ...+.|+|+||             .+..+.+...|+++.+.+|+++-..+. -.-.   ..+...+... ..+.-.|.|.
T Consensus        62 ~~~~~i~Dt~G-------------~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piiiv~  127 (180)
T cd04127          62 RIHLQLWDTAG-------------QERFRSLTTAFFRDAMGFLLIFDLTNE-QSFLNVRNWMSQLQTHAYCENPDIVLCG  127 (180)
T ss_pred             EEEEEEEeCCC-------------hHHHHHHHHHHhCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence            35688999999             133567788899988876665544321 1111   1122222221 2245678999


Q ss_pred             ccchhh
Q psy8958         146 TKVSQQ  151 (294)
Q Consensus       146 TK~D~~  151 (294)
                      ||.|+.
T Consensus       128 nK~Dl~  133 (180)
T cd04127         128 NKADLE  133 (180)
T ss_pred             eCccch
Confidence            999963

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04144 Ras2 Ras2 subfamily

Probab=80.84  E-value=3.8  Score=35.33  Aligned_cols=67  Identities=13%  Similarity=0.160  Sum_probs=40.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcC---CCCCeEEEEe
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMD---PQGKRTIFVL  145 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~D---P~G~RTIGVl  145 (294)
                      ..|.|+|+||..             ..+.+...|++..+.+|+++...+.+ +.. ...+...+.+.   +...-.|.|.
T Consensus        47 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvg  113 (190)
T cd04144          47 CMLEVLDTAGQE-------------EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVG  113 (190)
T ss_pred             EEEEEEECCCch-------------hhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            468999999932             23346667888888777766443321 111 12233333332   3456688899


Q ss_pred             ccchh
Q psy8958         146 TKVSQ  150 (294)
Q Consensus       146 TK~D~  150 (294)
                      ||.|+
T Consensus       114 NK~Dl  118 (190)
T cd04144         114 NKCDK  118 (190)
T ss_pred             EChhc
Confidence            99995

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=80.82  E-value=2.5  Score=41.72  Aligned_cols=66  Identities=17%  Similarity=0.215  Sum_probs=38.3

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc---hhcHHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA---ERSNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~---ans~al~lar~~DP~G~RTIGVlT  146 (294)
                      ...++|+|+||.-            +.+.+| ..++...+.+| .|++|+...   .+.+.+.+++...  ..+-|-|+|
T Consensus        79 ~~~i~liDtPGh~------------~f~~~~-~~g~~~aD~aI-lVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvN  142 (406)
T TIGR03680        79 LRRVSFVDAPGHE------------TLMATM-LSGAALMDGAL-LVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQN  142 (406)
T ss_pred             ccEEEEEECCCHH------------HHHHHH-HHHHHHCCEEE-EEEECCCCccccchHHHHHHHHHcC--CCeEEEEEE
Confidence            3568999999941            223344 34445566554 455666422   2334455554432  245789999


Q ss_pred             cchhh
Q psy8958         147 KVSQQ  151 (294)
Q Consensus       147 K~D~~  151 (294)
                      |.|+.
T Consensus       143 K~Dl~  147 (406)
T TIGR03680       143 KIDLV  147 (406)
T ss_pred             ccccC
Confidence            99964

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	294
1jwy_B	315	Crystal Structure Of The Dynamin A Gtpase Domain Co		2e-14
3l43_A	319	Crystal Structure Of The Dynamin 3 Gtpase Domain Bo		4e-12
3t34_A	360	Arabidopsis Thaliana Dynamin-Related Protein 1a (At		7e-12
3zyc_A	353	Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gm		2e-11
2aka_B	299	Structure Of The Nucleotide-Free Myosin Ii Motor Do		2e-11
3snh_A	743	Crystal Structure Of Nucleotide-Free Human Dynamin1		3e-11
3zvr_A	772	Crystal Structure Of Dynamin Length = 772		3e-11
2x2e_A	353	Dynamin Gtpase Dimer, Long Axis Form Length = 353		2e-10
3szr_A	608	Crystal Structure Of Modified Nucleotide-Free Human		1e-08
3zys_B	662	Human Dynamin 1 Deltaprd Polymer Stabilized With Gm		1e-08

>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 315

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFD--LTKESDLV----ELRKEVERRMMNSVRKGK 54
           +TR P+ + L+  P  +A     ++E+   L K +D+     E+R+E+ R       K K
Sbjct: 57  VTRRPLILQLTHLP--IADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNK 114
Query: 55  TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILC 114
            +S + I++ +  P +  + LVDLPGI      D  +D    IR+M   ++   NAII+ 
Sbjct: 115 GISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVA 174
Query: 115 IQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV 148
           +   + D   S+   L  ++DP+GKRTI V+TK+
Sbjct: 175 VTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208

>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound With Gdp Length = 319

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 4/148 (2%)
Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           +TR P+ + L       A+F     +    K +D  E+R E+E          K +S+  
Sbjct: 77  VTRRPLVLQLITSKAEYAEFLHCKGK----KFTDFDEVRLEIEAETDRVTGMNKGISSIP 132
Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           I++ V  P +  + L+DLPGI      D   D    IR+M    ++  N +IL +   + 
Sbjct: 133 INLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVTPANT 192
Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
           D   S+   L  ++DPQG RTI V+TK+
Sbjct: 193 DLANSDALKLAKEVDPQGLRTIGVITKL 220

>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a) In Prefission State Length = 360

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 7/151 (4%)
Query: 1   MTRSPVKVTL---SEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVS 57
           +TR P+ + L    +G    A+F    R+    K +D   +RKE++        + K +S
Sbjct: 67  VTRRPLVLQLQKIDDGTREYAEFLHLPRK----KFTDFAAVRKEIQDETDRETGRSKAIS 122
Query: 58  NEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQD 117
           +  I +S+  P +  + L+DLPG+   +    +      I  M ++++  PN IIL I  
Sbjct: 123 SVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISP 182
Query: 118 GSVDAERSNVTDLVSQMDPQGKRTIFVLTKV 148
            + D   S+   +  ++DP G RT  VLTK+
Sbjct: 183 ANQDLATSDAIKISREVDPSGDRTFGVLTKI 213

>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp Length = 353

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 4/148 (2%)
Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           +TR P+ + L       A+F     +    K +D  E+R E+E          K +S   
Sbjct: 64  VTRRPLVLQLVNATTEYAEFLHCKGK----KFTDFEEVRLEIEAETDRVTGTNKGISPVP 119
Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           I++ V  P +  + LVDLPG+      D   D    IR M    ++  N +IL +   + 
Sbjct: 120 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS 179
Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
           D   S+   +  ++DPQG+RTI V+TK+
Sbjct: 180 DLANSDALKVAKEVDPQGQRTIGVITKL 207

>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 299

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 4/148 (2%)
Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           +TR P+ + L       A+F     +    K +D  E+R E+E          K +S   
Sbjct: 59  VTRRPLVLQLVNSTTEYAEFLHCKGK----KFTDFEEVRLEIEAETDRVTGTNKGISPVP 114
Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           I++ V  P +  + LVDLPG+      D   D    IR M    ++  N +IL +   + 
Sbjct: 115 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS 174
Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
           D   S+   +  ++DPQG+RTI V+TK+
Sbjct: 175 DLANSDALKIAKEVDPQGQRTIGVITKL 202

>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1 Length = 743

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 4/148 (2%)
Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           +TR P+ + L       A+F     +    K +D  E+R E+E          K +S   
Sbjct: 61  VTRRPLVLQLVNATTEYAEFLHCKGK----KFTDFEEVRLEIEAETDRVTGTNKGISPVP 116
Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           I++ V  P +  + LVDLPG+      D   D    IR M    ++  N +IL +   + 
Sbjct: 117 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS 176
Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
           D   S+   +  ++DPQG+RTI V+TK+
Sbjct: 177 DLANSDALKVAKEVDPQGQRTIGVITKL 204

>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin Length = 772

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 4/148 (2%)
Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           +TR P+ + L       A+F     +    K +D  E+R E+E          K +S   
Sbjct: 84  VTRRPLVLQLVNSTTEYAEFLHCKGK----KFTDFEEVRLEIEAETDRVTGTNKGISPVP 139
Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           I++ V  P +  + LVDLPG+      D   D    IR M    ++  N +IL +   + 
Sbjct: 140 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS 199
Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
           D   S+   +  ++DPQG+RTI V+TK+
Sbjct: 200 DLANSDALKIAKEVDPQGQRTIGVITKL 227

>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form Length = 353

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 4/148 (2%)
Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           +TR P+ + L       A+F     +    K +D  E+R E+E          K +S   
Sbjct: 64  VTRRPLVLQLVNATTEYAEFLHCKGK----KFTDFEEVRLEIEAETDRVTGTNKGISPVP 119
Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           I++ V  P +  + LVDLPG       D   D    IR      ++  N +IL +   + 
Sbjct: 120 INLRVYSPHVLNLTLVDLPGXTKVPVGDQPPDIEFQIRDXLXQFVTKENCLILAVSPANS 179
Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
           D   S+   +  ++DPQG+RTI V+TK+
Sbjct: 180 DLANSDALKVAKEVDPQGQRTIGVITKL 207

>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa Length = 608

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 59/115 (51%)
Query: 33  SDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASD 92
           SD  E+ KE+ +       +G  +S+E+I++ +    +  + L+DLPGI   +  +  +D
Sbjct: 109 SDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPAD 168
Query: 93  TRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTK 147
               I+ + + ++     I L +   +VD   +    +  ++DP+G RTI +LTK
Sbjct: 169 IGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK 223

>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp Length = 662

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 59/115 (51%)
Query: 33  SDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASD 92
           SD  E+ KE+ +       +G  +S+E+I++ +    +  + L+DLPGI   +  +  +D
Sbjct: 134 SDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPAD 193
Query: 93  TRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTK 147
               I+ + + ++     I L +   +VD   +    +  ++DP+G RTI +LTK
Sbjct: 194 IGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK 248

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	5e-40
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	2e-39
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	3e-37
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	1e-36
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	1e-36
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	1e-30
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* Length = 360

 Score =  141 bits (358), Expect = 5e-40
 Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 1/148 (0%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           +TR P+ + L +      ++ +        K +D   +RKE++        + K +S+  
Sbjct: 67  VTRRPLVLQLQKIDDGTREYAEFL-HLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVP 125

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           I +S+  P +  + L+DLPG+   +    +      I  M ++++  PN IIL I   + 
Sbjct: 126 IHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ 185

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
           D   S+   +  ++DP G RT  VLTK+
Sbjct: 186 DLATSDAIKISREVDPSGDRTFGVLTKI 213

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* Length = 315

 Score =  139 bits (351), Expect = 2e-39
 Identities = 60/288 (20%), Positives = 106/288 (36%), Gaps = 83/288 (28%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSS-REF---DLTKESDLVELRKEVERRMMNSVRKGKTV 56
           +TR P+ + L+  P      +     EF         D  E+R+E+ R       K K +
Sbjct: 57  VTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGI 116

Query: 57  SNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQ 116
           S + I++ +  P +  + LVDLPGI      D  +D    IR+M   ++   NAII+ + 
Sbjct: 117 SAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVT 176

Query: 117 DGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLGSVMD 176
             + D   S+   L  ++DP+GKRT                                   
Sbjct: 177 PANTDLANSDALQLAKEVDPEGKRT----------------------------------- 201

Query: 177 LQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILA 236
                 I V+TK+                             DL ++         ++L 
Sbjct: 202 ------IGVITKL-----------------------------DLMDKG----TDAMEVLT 222

Query: 237 GKLFPMKALGYFAVVTGRGGK---KDESIQDIKEYEENFFKKSKLFST 281
           G++ P+  LG+  V+  R  +     +SI++  + E  +FK   ++ +
Sbjct: 223 GRVIPLT-LGFIGVIN-RSQEDIIAKKSIRESLKSEILYFKNHPIYKS 268

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* Length = 299

 Score =  133 bits (336), Expect = 3e-37
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 4/148 (2%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           +TR P+ + L       A+F     +    K +D  E+R E+E          K +S   
Sbjct: 59  VTRRPLVLQLVNSTTEYAEFLHCKGK----KFTDFEEVRLEIEAETDRVTGTNKGISPVP 114

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           I++ V  P +  + LVDLPG+      D   D    IR M    ++  N +IL +   + 
Sbjct: 115 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS 174

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
           D   S+   +  ++DPQG+RTI V+TK+
Sbjct: 175 DLANSDALKIAKEVDPQGQRTIGVITKL 202

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A Length = 353

 Score =  133 bits (335), Expect = 1e-36
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 4/148 (2%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           +TR P+ + L       A+F     +    K +D  E+R E+E          K +S   
Sbjct: 64  VTRRPLVLQLVNATTEYAEFLHCKGK----KFTDFEEVRLEIEAETDRVTGTNKGISPVP 119

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           I++ V  P +  + LVDLPG+      D   D    IR M    ++  N +IL +   + 
Sbjct: 120 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS 179

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
           D   S+   +  ++DPQG+RTI V+TK+
Sbjct: 180 DLANSDALKVAKEVDPQGQRTIGVITKL 207

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A Length = 772

 Score =  137 bits (346), Expect = 1e-36
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 4/148 (2%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           +TR P+ + L       A+F     +    K +D  E+R E+E          K +S   
Sbjct: 84  VTRRPLVLQLVNSTTEYAEFLHCKGK----KFTDFEEVRLEIEAETDRVTGTNKGISPVP 139

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           I++ V  P +  + LVDLPG+      D   D    IR M    ++  N +IL +   + 
Sbjct: 140 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS 199

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
           D   S+   +  ++DPQG+RTI V+TK+
Sbjct: 200 DLANSDALKIAKEVDPQGQRTIGVITKL 227

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B Length = 608

 Score =  119 bits (300), Expect = 1e-30
 Identities = 35/148 (23%), Positives = 70/148 (47%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           +TR P+ + L +           S +    + SD  E+ KE+ +       +G  +S+E+
Sbjct: 77  VTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHEL 136

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           I++ +    +  + L+DLPGI   +  +  +D    I+ + + ++     I L +   +V
Sbjct: 137 ITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNV 196

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
           D   +    +  ++DP+G RTI +LTK 
Sbjct: 197 DIATTEALSMAQEVDPEGDRTIGILTKP 224

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 8e-06
 Identities = 40/315 (12%), Positives = 84/315 (26%), Gaps = 87/315 (27%)

Query: 27  FDL-------TKESDLVELRKEVERR--MMNSVRKGKTVSN------EVISMSVKGPGLQ 71
           F+L       T+   + +           ++      T         + +    +     
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ----- 316

Query: 72  RMVLVDLP-----------GIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
                DLP            II+ S +D    T D  + +    ++    I   +     
Sbjct: 317 -----DLPREVLTTNPRRLSIIAESIRDGL-ATWDNWKHVNCDKLTT--IIESSLNVLEP 368

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVL-TKVSQQLIRI--EKDGSVDAERSNVTDL--GSVM 175
              R     L           +F     +   L+ +        D     V  L   S++
Sbjct: 369 AEYRKMFDRLS----------VFPPSAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYSLV 417

Query: 176 DLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHR-LIKSFIVCLQVD------LAEEN---- 224
           + Q K +   +   S  + +   L      HR ++  + +    D         +     
Sbjct: 418 EKQPKESTISIP--SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 225 ----H-SDPQRIKKILAGKLFPMKALGY-F---------AVVTGRGGKKDESIQDIKEYE 269
               H  + +  +++    LF M  L + F               G   + ++Q +K Y+
Sbjct: 476 HIGHHLKNIEHPERM---TLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-TLQQLKFYK 531

Query: 270 ENFFKKSKLFSTKVR 284
                    +   V 
Sbjct: 532 PYICDNDPKYERLVN 546

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.96
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.96
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.95
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.94
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.85
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.81
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.74
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.27
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.53
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.52
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.5
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.4
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.3
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.09
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.98
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	95.73
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.66
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.65
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.63
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	94.72
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	94.64
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	94.49
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	94.43
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	94.31
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	94.14
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	94.08
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	94.05
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.05
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	93.99
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	93.99
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	93.96
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	93.93
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	93.9
2fh5_B	214	SR-beta, signal recognition particle receptor beta	93.87
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	93.77
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	93.71
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	93.68
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	93.66
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	93.65
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	93.63
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	93.55
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	93.53
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	93.39
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	93.29
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	93.27
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	93.05
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	93.02
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	92.99
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	92.89
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	92.87
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	92.79
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	92.78
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	92.78
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	92.77
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	92.76
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	92.75
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	92.74
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	92.72
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	92.68
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	92.67
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	92.65
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	92.61
1nrj_B	218	SR-beta, signal recognition particle receptor beta	92.57
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	92.52
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	92.5
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	92.47
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	92.47
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	92.46
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	92.46
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	92.42
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	92.36
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	92.36
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	92.32
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	92.17
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	91.98
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	91.94
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	91.86
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	91.85
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	91.85
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	91.77
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	91.7
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	91.69
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	91.67
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	91.61
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	91.58
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	91.5
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	91.39
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	91.34
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	91.34
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	91.25
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	90.98
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	90.96
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	90.9
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	90.83
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	90.76
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	90.7
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	90.62
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	90.57
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	90.46
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	90.45
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	90.44
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	90.42
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	90.38
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	90.37
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	90.37
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	90.13
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	90.02
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	89.97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	89.94
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	89.9
2wji_A	165	Ferrous iron transport protein B homolog; membrane	89.85
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	89.83
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	89.81
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	89.73
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	89.71
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	89.7
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	89.67
3llu_A	196	RAS-related GTP-binding protein C; structural geno	89.51
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	89.39
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	89.37
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	89.35
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	89.27
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	89.2
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	89.12
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	88.85
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	88.76
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	88.63
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	88.59
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	88.45
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	88.35
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	88.31
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	88.22
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	88.16
2ged_A	193	SR-beta, signal recognition particle receptor beta	88.01
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	87.98
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	87.82
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	87.79
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	87.62
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	87.46
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	87.3
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	87.29
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	87.25
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	87.21
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	87.12
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	86.91
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	86.77
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	86.74
1wb1_A	482	Translation elongation factor SELB; selenocysteine	86.51
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	85.95
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	85.77
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	85.71
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	85.51
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	85.45
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	85.41
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	85.18
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	85.08
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	85.05
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	84.92
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	84.38
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	83.88
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	84.33
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	83.66
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	83.53
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	83.51
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	83.41
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	83.32
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	83.14
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	82.34
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	82.14
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	82.03
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	81.57
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	81.29
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	80.97
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	80.95
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	80.84
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	80.63
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	80.54
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	80.51

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.96  E-value=1.2e-29  Score=257.11  Aligned_cols=217  Identities=22%  Similarity=0.357  Sum_probs=163.9

Q ss_pred             CCcCceEEEEEeCCC--ccccccccccccCCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCCceEEeC
Q psy8958           1 MTRSPVKVTLSEGPY--HVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDL   78 (294)
Q Consensus         1 vTRrPl~L~L~~~p~--~~~~f~~~~~ef~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~LTLVDL   78 (294)
                      ||++|..+++.+.+.  .+.......  |.-....+...+.+.+...+....+.++++|.+++.+.+.+|+.|+|+|+|+
T Consensus        77 vt~~g~~i~~~~~~~~~~~~~~i~~v--~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDe  154 (608)
T 3szr_A           77 VTRCPLVLKLKKLVNEDKWRGKVSYQ--DYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDL  154 (608)
T ss_dssp             CCCSCEEEEEEECSSSSCCEEEESCC-----CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEEC
T ss_pred             EEEcCEEEEEecCCccccceeEEeee--cccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeC
Confidence            789999999888652  222211110  1112234455555555555444446678899999999999999999999999


Q ss_pred             CCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhhhhhhhcc
Q psy8958          79 PGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKD  158 (294)
Q Consensus        79 PGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~~~~~~~~  158 (294)
                      ||+...++.+++.+...++.+|+.+|++++++|||+|++++.|++++.++++|+++||.|.|||||+||+|+.       
T Consensus       155 PGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv-------  227 (608)
T 3szr_A          155 PGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLV-------  227 (608)
T ss_dssp             CC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGS-------
T ss_pred             CCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhc-------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999853       


Q ss_pred             ccccccccccccCCccccccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhhcCCChHHHHHHHcCC
Q psy8958         159 GSVDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGK  238 (294)
Q Consensus       159 ~~v~~~r~~~~~LG~~~d~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~~~~~~~~~~~il~~~  238 (294)
                                                                                     +++  ...++.+++.|+
T Consensus       228 ---------------------------------------------------------------~~g--~~~~~~~~l~~~  242 (608)
T 3szr_A          228 ---------------------------------------------------------------DKG--TEDKVVDVVRNL  242 (608)
T ss_dssp             ---------------------------------------------------------------SSS--STTCCCCCC--C
T ss_pred             ---------------------------------------------------------------Ccc--cHHHHHHHHhCc
Confidence                                                                           111  123456789999


Q ss_pred             cccCCCCCeEEEEeCCCCC---CCccHHHHHHHHHHHhccChhhhhhhhcCCCCCcCCC
Q psy8958         239 LFPMKALGYFAVVTGRGGK---KDESIQDIKEYEENFFKKSKLFSTKVRQGNQGSSGRL  294 (294)
Q Consensus       239 ~~~L~~lG~~~v~~~~~~~---~~~~~~~~~~~e~~~f~~~~~~~~~~~~~~~~~~~~~  294 (294)
                      .+||+ +||++|+| |+++   .+.+++++++.|+.||.+||+|+.... .++.|+.+|
T Consensus       243 ~~~l~-~g~~~v~n-r~~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~-~~~~g~~~L  298 (608)
T 3szr_A          243 VFHLK-KGYMIVKC-RGQQEIQDQLSLSEALQREKIFFENHPYFRDLLE-EGKATVPCL  298 (608)
T ss_dssp             CSCCS-SCEECCCC-SCTTCTTTCCCHHHHTTTHHHHTTTCTTTSGGGG-TCC---CCH
T ss_pred             ccccC-ceEEEEec-CchhhcccCCCHHHHHHHHHHHHccCccccccCc-cccccHHHH
Confidence            99999 99999999 5553   668999999999999999999987653 356676654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.96  E-value=1.4e-28  Score=232.34  Aligned_cols=203  Identities=25%  Similarity=0.432  Sum_probs=177.5

Q ss_pred             CCcCceEEEEEeCCC---ccccccccccccCCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCCceEEe
Q psy8958           1 MTRSPVKVTLSEGPY---HVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVD   77 (294)
Q Consensus         1 vTRrPl~L~L~~~p~---~~~~f~~~~~ef~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~LTLVD   77 (294)
                      |||+|+++++.+.+.   .++.|.+..    ...+.+|..+..++..++....|.+.+||.++|.++|.+|+.++|+|||
T Consensus        67 vT~~p~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvD  142 (360)
T 3t34_A           67 VTRRPLVLQLQKIDDGTREYAEFLHLP----RKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLID  142 (360)
T ss_dssp             CCCSCEEEEEEECSSCSCCEEEETTST----TCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEE
T ss_pred             ccCcceEEEEecCCCcccceeeeecCC----CcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEE
Confidence            799999999998763   456665543    2467889999999999999888889999999999999999999999999


Q ss_pred             CCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhhhhhhhc
Q psy8958          78 LPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEK  157 (294)
Q Consensus        78 LPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~~~~~~~  157 (294)
                      |||+.+....+|+.++..++..++..|+.++++|||+|.+++.|..+++++++++.+++.|.+||+|+||+|+.      
T Consensus       143 tPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~------  216 (360)
T 3t34_A          143 LPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLM------  216 (360)
T ss_dssp             CCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGC------
T ss_pred             CCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccC------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999842      


Q ss_pred             cccccccccccccCCccccccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhhcCCChHHHHHHHcC
Q psy8958         158 DGSVDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAG  237 (294)
Q Consensus       158 ~~~v~~~r~~~~~LG~~~d~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~~~~~~~~~~~il~~  237 (294)
                                                                                      +++    +.+.+++.+
T Consensus       217 ----------------------------------------------------------------~~~----~~~~~~~~~  228 (360)
T 3t34_A          217 ----------------------------------------------------------------DKG----TDAVEILEG  228 (360)
T ss_dssp             ----------------------------------------------------------------CTT----CCSHHHHTT
T ss_pred             ----------------------------------------------------------------CCc----ccHHHHHcC
Confidence                                                                            111    224567788


Q ss_pred             CcccCCCCCeEEEEeCCCCC---CCccHHHHHHHHHHHhccChhhhhhh
Q psy8958         238 KLFPMKALGYFAVVTGRGGK---KDESIQDIKEYEENFFKKSKLFSTKV  283 (294)
Q Consensus       238 ~~~~L~~lG~~~v~~~~~~~---~~~~~~~~~~~e~~~f~~~~~~~~~~  283 (294)
                      ...+++ +||++|++ ++++   ...++.+++..|+.||.+||+|+...
T Consensus       229 ~~~~~~-~~~~~v~~-~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~  275 (360)
T 3t34_A          229 RSFKLK-YPWVGVVN-RSQADINKNVDMIAARKREREYFSNTTEYRHLA  275 (360)
T ss_dssp             SSSCCS-SCCEEECC-CCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGG
T ss_pred             cccccc-CCeEEEEE-CChHHhccCCCHHHHHHHHHHHhcCCCccccch
Confidence            889998 99999998 5443   56788899999999999999999764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.95  E-value=5.8e-27  Score=243.41  Aligned_cols=202  Identities=29%  Similarity=0.454  Sum_probs=177.9

Q ss_pred             CCcCceEEEEEeCCCccccccccccccCCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCCceEEeCCC
Q psy8958           1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPG   80 (294)
Q Consensus         1 vTRrPl~L~L~~~p~~~~~f~~~~~ef~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~LTLVDLPG   80 (294)
                      |||||++++|.+++..|+.|.+..+    ..+.++.++.++++.+++...|.+++||.++|.++|++|++++|+||||||
T Consensus        84 ~Tr~Pl~l~l~~~~~~~~~~l~~~~----~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPG  159 (772)
T 3zvr_A           84 VTRRPLVLQLVNSTTEYAEFLHCKG----KKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPG  159 (772)
T ss_dssp             SCSSCEEEEEEECSSCEEECSTTTT----CCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCC
T ss_pred             ccccceEEEeecCCcchhheeccCC----cccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCC
Confidence            8999999999999998998876543    356889999999999999888889999999999999999999999999999


Q ss_pred             CcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhhhhhhhcccc
Q psy8958          81 IISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGS  160 (294)
Q Consensus        81 i~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~~~~~~~~~~  160 (294)
                      ++..++.+||.++...+.+++..|+.++..+||+|++|+.++.+++.+.+++.+++.|.++|+|+||+|+.         
T Consensus       160 i~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv---------  230 (772)
T 3zvr_A          160 MTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLM---------  230 (772)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSS---------
T ss_pred             cccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccC---------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999842         


Q ss_pred             ccccccccccCCccccccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhhcCCChHHHHHHHcCCcc
Q psy8958         161 VDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF  240 (294)
Q Consensus       161 v~~~r~~~~~LG~~~d~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~~~~~~~~~~~il~~~~~  240 (294)
                                                                                   +++    .....++.++.+
T Consensus       231 -------------------------------------------------------------~~~----~~~~~il~~~~~  245 (772)
T 3zvr_A          231 -------------------------------------------------------------DEG----TDARDVLENKLL  245 (772)
T ss_dssp             -------------------------------------------------------------CTT----CCSHHHHTTCSS
T ss_pred             -------------------------------------------------------------Ccc----hhhHHHHHHHhh
Confidence                                                                         110    122456677889


Q ss_pred             cCCCCCeEEEEeCCCCC---CCccHHHHHHHHHHHhccChhhhhh
Q psy8958         241 PMKALGYFAVVTGRGGK---KDESIQDIKEYEENFFKKSKLFSTK  282 (294)
Q Consensus       241 ~L~~lG~~~v~~~~~~~---~~~~~~~~~~~e~~~f~~~~~~~~~  282 (294)
                      +|+ +||..|++ .+++   +-..+.++...|+.||..+|+|...
T Consensus       246 ~l~-lg~~~VV~-iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~l  288 (772)
T 3zvr_A          246 PLR-RGYIGVVN-RSQKDIDGKKDITAALAAERKFFLSHPSYRHL  288 (772)
T ss_dssp             CCS-SCEEECCC-CCCEESSSSEEHHHHHHHHHHHHHHCTTTGGG
T ss_pred             hhh-ccCCceEE-ecccccccchhHHHHHHHHHHhccCCcchhhh
Confidence            998 89999998 6654   4567888899999999999999544

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.94  E-value=3.5e-26  Score=215.89  Aligned_cols=203  Identities=29%  Similarity=0.450  Sum_probs=175.7

Q ss_pred             CCcCceEEEEEeCCCccccccccccccCCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCCceEEeCCC
Q psy8958           1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPG   80 (294)
Q Consensus         1 vTRrPl~L~L~~~p~~~~~f~~~~~ef~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~LTLVDLPG   80 (294)
                      |||+|.++++.+.+..|+.|.+..+    ..++++..+..+++.++.+..|.+.+++.+++.+++++|+.++|+|||+||
T Consensus        64 ~t~~p~~~~~~~~~~~~~~~~~~~~----~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG  139 (353)
T 2x2e_A           64 VTRRPLVLQLVNATTEYAEFLHCKG----KKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPG  139 (353)
T ss_dssp             CCCSCEEEEEEECSSCEEEETTSTT----CCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCC
T ss_pred             ccccceEEEEEcCCccceeeeecCC----cccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCC
Confidence            7999999999999988998876542    356788889999988888777778999999999999999999999999999


Q ss_pred             CcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhhhhhhhcccc
Q psy8958          81 IISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGS  160 (294)
Q Consensus        81 i~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~~~~~~~~~~  160 (294)
                      +.+.+..+|++++.+.+++|+..|+.+++++||+|++|+.|+++++++++++.+|+.|.++|+|+||+|+.         
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~---------  210 (353)
T 2x2e_A          140 MTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLM---------  210 (353)
T ss_dssp             BCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGS---------
T ss_pred             CCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccccc---------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999842         


Q ss_pred             ccccccccccCCccccccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhhcCCChHHHHHHHcCCcc
Q psy8958         161 VDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF  240 (294)
Q Consensus       161 v~~~r~~~~~LG~~~d~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~~~~~~~~~~~il~~~~~  240 (294)
                                                                                   +++    ..+.+++.++.+
T Consensus       211 -------------------------------------------------------------~~~----~~~~~~~~~~~~  225 (353)
T 2x2e_A          211 -------------------------------------------------------------DEG----TDARDVLENKLL  225 (353)
T ss_dssp             -------------------------------------------------------------CTT----CCCHHHHTTCSS
T ss_pred             -------------------------------------------------------------Ccc----hhHHHHHhCCcc
Confidence                                                                         110    123456778889


Q ss_pred             cCCCCCeEEEEeCCCCC---CCccHHHHHHHHHHHhccChhhhhhh
Q psy8958         241 PMKALGYFAVVTGRGGK---KDESIQDIKEYEENFFKKSKLFSTKV  283 (294)
Q Consensus       241 ~L~~lG~~~v~~~~~~~---~~~~~~~~~~~e~~~f~~~~~~~~~~  283 (294)
                      +|+ +||+.|++ .+++   +...+.++...|..||..++.|++.-
T Consensus       226 ~l~-~~~~~v~~-~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~  269 (353)
T 2x2e_A          226 PLR-RGYIGVVN-RSQKDIDGKKDITAALAAERKFFLSHPSYRHLA  269 (353)
T ss_dssp             CCT-TCEEECCC-CCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGG
T ss_pred             ccc-CCceEEEe-CCcccccccccHHHHHHHHHHHhccCCcccccH
Confidence            998 89998888 6654   44566677778999999999998763

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.85  E-value=8.6e-20  Score=165.09  Aligned_cols=203  Identities=29%  Similarity=0.452  Sum_probs=165.1

Q ss_pred             CCcCceEEEEEeCCCccccccccccccCCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCCceEEeCCC
Q psy8958           1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPG   80 (294)
Q Consensus         1 vTRrPl~L~L~~~p~~~~~f~~~~~ef~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~LTLVDLPG   80 (294)
                      ||++|.++++.+.+..|..|.+..+    ..++.+..+..+++..+....|.+.+++.+++.+++.+|+..+|+|||+||
T Consensus        59 ~t~~p~~~~~~~~~~~~~~~~~~~g----~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG  134 (299)
T 2aka_B           59 VTRRPLVLQLVNSTTEYAEFLHCKG----KKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPG  134 (299)
T ss_dssp             SCSSCEEEEEEECSSCEEEETTSTT----CCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCC
T ss_pred             ccccceEEEEecCCcccchhhhcCC----cccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCC
Confidence            6899999999999887877765432    345777877777877776666777899999999999999999999999999


Q ss_pred             CcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhhhhhhhcccc
Q psy8958          81 IISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGS  160 (294)
Q Consensus        81 i~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~~~~~~~~~~  160 (294)
                      +......+|++++......++..|++..+++||+|++++.++.+++++.+++.+++.+.++|+|+||+|+.         
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~---------  205 (299)
T 2aka_B          135 MTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLM---------  205 (299)
T ss_dssp             BCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGS---------
T ss_pred             CCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccC---------
Confidence            99988878888888899999999999999999999999999999999899999999999999999999852         


Q ss_pred             ccccccccccCCccccccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhhcCCChHHHHHHHcCCcc
Q psy8958         161 VDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF  240 (294)
Q Consensus       161 v~~~r~~~~~LG~~~d~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~~~~~~~~~~~il~~~~~  240 (294)
                                                                                   ++.    ..+.+.+.+..+
T Consensus       206 -------------------------------------------------------------~~~----~~~~~~~~~~~~  220 (299)
T 2aka_B          206 -------------------------------------------------------------DEG----TDARDVLENKLL  220 (299)
T ss_dssp             -------------------------------------------------------------CTT----CCCHHHHTTCSS
T ss_pred             -------------------------------------------------------------CCC----chHHHHHhCCcC
Confidence                                                                         000    012345666677


Q ss_pred             cCCCCCeEEEEeCCCCC---CCccHHHHHHHHHHHhccChhhhhhh
Q psy8958         241 PMKALGYFAVVTGRGGK---KDESIQDIKEYEENFFKKSKLFSTKV  283 (294)
Q Consensus       241 ~L~~lG~~~v~~~~~~~---~~~~~~~~~~~e~~~f~~~~~~~~~~  283 (294)
                      +++ +||..|+. .+++   +-..+-++...|..||..++.|...-
T Consensus       221 ~~~-~~~~~v~~-~SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~  264 (299)
T 2aka_B          221 PLR-RGYIGVVN-RSQKDIDGKKDITAALAAERKFFLSHPSYRHLA  264 (299)
T ss_dssp             CCT-TCEEECCC-CCCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGG
T ss_pred             cCC-CCcEEEEC-CChhhccccccHHHHHHHHHHHHhcCCccccch
Confidence            887 79987877 5554   33455566677999998888887653

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.81  E-value=1.5e-19  Score=165.22  Aligned_cols=202  Identities=29%  Similarity=0.501  Sum_probs=148.3

Q ss_pred             CCcCceEEEEEeCCC--------ccccccccccccCCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCC
Q psy8958           1 MTRSPVKVTLSEGPY--------HVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQR   72 (294)
Q Consensus         1 vTRrPl~L~L~~~p~--------~~~~f~~~~~ef~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~   72 (294)
                      ||++|.++++.+.+.        .|.+|.+..+    ..+.+|.++.+++..++.+..|.+++||.+++.++|.+|+..+
T Consensus        57 ~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  132 (315)
T 1jwy_B           57 VTRRPLILQLTHLPIADDGSQTQEWGEFLHKPN----DMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVN  132 (315)
T ss_dssp             ----CEEEEEEECCCCTTSCCCCCEEEESSSTT----CCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCS
T ss_pred             eeeeeEEEEEEeCCCcccccchhhhhhhhcccc----cccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCC
Confidence            799999999988642        4555554332    3467888999999988888777788999999999999999999


Q ss_pred             ceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhhh
Q psy8958          73 MVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQL  152 (294)
Q Consensus        73 LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~~  152 (294)
                      ++|||+||+...+..+|+..+......++..|+...+++|++|.+++.++.+++.+.+++.+++.+.++|.|+||+|+. 
T Consensus       133 ~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~-  211 (315)
T 1jwy_B          133 LTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLM-  211 (315)
T ss_dssp             EEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSS-
T ss_pred             cEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccC-
Confidence            9999999999877777888888899999999999999999999988889988888899999999999999999999842 


Q ss_pred             hhhhccccccccccccccCCccccccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhhcCCChHHHH
Q psy8958         153 IRIEKDGSVDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIK  232 (294)
Q Consensus       153 ~~~~~~~~v~~~r~~~~~LG~~~d~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~~~~~~~~~~  232 (294)
                                             +                                              +.    ..+.
T Consensus       212 -----------------------~----------------------------------------------~~----~~~~  218 (315)
T 1jwy_B          212 -----------------------D----------------------------------------------KG----TDAM  218 (315)
T ss_dssp             -----------------------C----------------------------------------------SS----CCCH
T ss_pred             -----------------------C----------------------------------------------cc----hHHH
Confidence                                   0                                              00    0123


Q ss_pred             HHHcCCcccCCCCCeEEEEeCCCCCC---CccHHHHHHHHHHHhccChhhhhh
Q psy8958         233 KILAGKLFPMKALGYFAVVTGRGGKK---DESIQDIKEYEENFFKKSKLFSTK  282 (294)
Q Consensus       233 ~il~~~~~~L~~lG~~~v~~~~~~~~---~~~~~~~~~~e~~~f~~~~~~~~~  282 (294)
                      +.+.++..+++ +||+.|+. .++..   ...+.++.+.+.+||..+|+|...
T Consensus       219 ~~~~~~~~~~~-~~~~~v~~-~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~  269 (315)
T 1jwy_B          219 EVLTGRVIPLT-LGFIGVIN-RSQEDIIAKKSIRESLKSEILYFKNHPIYKSI  269 (315)
T ss_dssp             HHHTTSSSCCT-TCEEECCC-CCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGS
T ss_pred             HHHhCCCccCC-CCeEEEec-CChhhhccCCCHHHHHHHHHHHHhCCCccccc
Confidence            44555667777 89998877 55543   788999999999999999988743

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.74  E-value=1.7e-05  Score=81.43  Aligned_cols=87  Identities=20%  Similarity=0.211  Sum_probs=63.6

Q ss_pred             ccccccceEEEEeCCCC---CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHh
Q psy8958          54 KTVSNEVISMSVKGPGL---QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDL  130 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~---p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~l  130 (294)
                      ...+.++..++|+.|.-   .+++|||+||+.....          ...++..|+...+ +||.|++++..+..++...+
T Consensus       154 ~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----------~~~~~~~~i~~aD-~vL~Vvda~~~~s~~e~~~l  222 (695)
T 2j69_A          154 KQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----------RNELSLGYVNNCH-AILFVMRASQPCTLGERRYL  222 (695)
T ss_dssp             CCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----------CHHHHTHHHHSSS-EEEEEEETTSTTCHHHHHHH
T ss_pred             ccccccceEEEEEccchhccCCeEEEECCCCCchhh----------HHHHHHHHHHhCC-EEEEEEeCCCccchhHHHHH
Confidence            34566788899998864   4799999999875321          2467788888877 56667777766665555444


Q ss_pred             hhhcCCCCCeEEEEeccchhh
Q psy8958         131 VSQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       131 ar~~DP~G~RTIGVlTK~D~~  151 (294)
                      .+.+...+.++|.|+||+|+.
T Consensus       223 ~~~l~~~~~~iiiVlNK~Dl~  243 (695)
T 2j69_A          223 ENYIKGRGLTVFFLVNAWDQV  243 (695)
T ss_dssp             HHHTTTSCCCEEEEEECGGGG
T ss_pred             HHHHHhhCCCEEEEEECcccc
Confidence            455666678899999999974

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.27  E-value=0.00093  Score=56.67  Aligned_cols=91  Identities=16%  Similarity=0.169  Sum_probs=59.9

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCc--eEEEeccCCCcch--hcHHHHh
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNA--IILCIQDGSVDAE--RSNVTDL  130 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~s--IILaV~~a~~D~a--ns~al~l  130 (294)
                      +.+.+.....+...+...++|+|+||+.....   +....+..+.++..|+..-..  +++.|++++..+.  ....++.
T Consensus        63 ~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~  139 (223)
T 4dhe_A           63 GRTQHINYFSVGPAAEPVAHLVDLPGYGYAEV---PGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEW  139 (223)
T ss_dssp             CSCCCEEEEEESCTTSCSEEEEECCCCCSSCC---CSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHH
T ss_pred             CcccceEEEEecCCCCCcEEEEcCCCCCcccC---ChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHH
Confidence            34455556666645667899999999765443   234467778888898887554  4666777664333  2233444


Q ss_pred             hhhcCCCCCeEEEEeccchhh
Q psy8958         131 VSQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       131 ar~~DP~G~RTIGVlTK~D~~  151 (294)
                      .++   .+...|.|+||+|+.
T Consensus       140 l~~---~~~p~i~v~nK~Dl~  157 (223)
T 4dhe_A          140 FAP---TGKPIHSLLTKCDKL  157 (223)
T ss_dssp             HGG---GCCCEEEEEECGGGS
T ss_pred             HHh---cCCCEEEEEeccccC
Confidence            444   467899999999963

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.53  E-value=0.0088  Score=53.55  Aligned_cols=94  Identities=14%  Similarity=0.182  Sum_probs=53.3

Q ss_pred             ccccceEEEEeCCCC-CCceEEeCCCCcccCCCC-CChhHHHHHHHHhhhhcCC-------------CCceEEEeccCCC
Q psy8958          56 VSNEVISMSVKGPGL-QRMVLVDLPGIISTSTQD-MASDTRDLIRQMTQTHMSN-------------PNAIILCIQDGSV  120 (294)
Q Consensus        56 ~S~~~I~leI~gP~~-p~LTLVDLPGi~~~~~~~-q~~~~~~~i~~Lv~~Yi~~-------------p~sIILaV~~a~~  120 (294)
                      +..+.....+...+. ..|+|+|+||+-...... .-..+...+.+-...|+..             .+++++.|.++..
T Consensus        49 ~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~  128 (274)
T 3t5d_A           49 VQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH  128 (274)
T ss_dssp             CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS
T ss_pred             eEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC
Confidence            334444455544333 479999999985543322 1223333333333455543             4477777777764


Q ss_pred             cchhcHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958         121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       121 D~ans~al~lar~~DP~G~RTIGVlTK~D~~  151 (294)
                      .+...+ ..+.+.+.. +.-.|.|+||.|+.
T Consensus       129 ~~~~~d-~~~l~~l~~-~~pvi~V~nK~D~~  157 (274)
T 3t5d_A          129 GLKPLD-IEFMKRLHE-KVNIIPLIAKADTL  157 (274)
T ss_dssp             SCCHHH-HHHHHHHTT-TSCEEEEESSGGGS
T ss_pred             CCCHHH-HHHHHHHhc-cCCEEEEEeccCCC
Confidence            444333 334444544 67899999999963

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.52  E-value=0.0047  Score=53.70  Aligned_cols=79  Identities=22%  Similarity=0.359  Sum_probs=47.2

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhh-cCC-CCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQ-MDP-QGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~-~DP-~G~RTIGVlTK~  148 (294)
                      ..++|+|+||+......  ..+....+...+..|...++.+|+++-....+......++...+ +.. .+..+|.|+||.
T Consensus        78 ~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~  155 (239)
T 3lxx_A           78 TELVVVDTPGIFDTEVP--NAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK  155 (239)
T ss_dssp             EEEEEEECCSCC-------CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred             ceEEEEECCCccCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence            46899999999876543  34556677778888888888776655433223333334433322 211 124699999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       156 D~~  158 (239)
T 3lxx_A          156 DDL  158 (239)
T ss_dssp             GGC
T ss_pred             ccC
Confidence            963

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.50  E-value=0.0052  Score=54.04  Aligned_cols=79  Identities=16%  Similarity=0.250  Sum_probs=51.0

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCC--CCeEEEEec-c
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQ--GKRTIFVLT-K  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~--G~RTIGVlT-K  147 (294)
                      ..+.|+|+||+.....  ........+...+..|+...+.+|+++-.....-....+++..+++-..  +...|.|+| |
T Consensus        71 ~~i~iiDTpG~~~~~~--~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK  148 (260)
T 2xtp_A           71 REIVIIDTPDMFSWKD--HCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHK  148 (260)
T ss_dssp             EEEEEEECCGGGGSSC--CCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred             CEEEEEECcCCCCCCC--CHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcc
Confidence            4699999999987553  3344555666777788899997776665543222223344555554221  356899999 9


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      .|+.
T Consensus       149 ~Dl~  152 (260)
T 2xtp_A          149 EDLN  152 (260)
T ss_dssp             GGGT
T ss_pred             cccC
Confidence            9963

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.40  E-value=0.0045  Score=50.98  Aligned_cols=73  Identities=18%  Similarity=0.286  Sum_probs=48.3

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCC--ceEEEeccCCCcchhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPN--AIILCIQDGSVDAERS--NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~--sIILaV~~a~~D~ans--~al~lar~~DP~G~RTIGVlTK  147 (294)
                      .+.|+|+||+....   .+.+..+..+.+...|+....  ..++.|++++......  ..++..++   .+...|.|+||
T Consensus        70 ~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~p~i~v~nK  143 (195)
T 1svi_A           70 ELHFVDVPGYGFAK---VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY---YGIPVIVIATK  143 (195)
T ss_dssp             TEEEEECCCBCCCS---SCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred             cEEEEECCCCCccc---cCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH---cCCCEEEEEEC
Confidence            79999999975433   345556777888899987652  3555566665433222  23344443   45779999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      +|+
T Consensus       144 ~Dl  146 (195)
T 1svi_A          144 ADK  146 (195)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            996

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.30  E-value=0.012  Score=53.97  Aligned_cols=91  Identities=12%  Similarity=0.262  Sum_probs=60.0

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchhcHH-HHhhh
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAERSNV-TDLVS  132 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~ans~a-l~lar  132 (294)
                      +.+.+.+...+..+.-..++|+|+||+.....   ...+.+....++..|+...+.+|+++-..+. ...+... ++.++
T Consensus        43 ~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~  119 (308)
T 3iev_A           43 GTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIK  119 (308)
T ss_dssp             CCCCSCEEEEEEETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTG
T ss_pred             CceeeEEEEEEecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHH
Confidence            34455555555555356799999999986442   2356677778889999999877666554432 2333333 45555


Q ss_pred             hcCCCCCeEEEEeccchhh
Q psy8958         133 QMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       133 ~~DP~G~RTIGVlTK~D~~  151 (294)
                      .   .+...|.|+||+|+.
T Consensus       120 ~---~~~pvilV~NK~Dl~  135 (308)
T 3iev_A          120 P---LNKPVIVVINKIDKI  135 (308)
T ss_dssp             G---GCCCEEEEEECGGGS
T ss_pred             h---cCCCEEEEEECccCC
Confidence            4   356799999999964

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.09  E-value=0.013  Score=52.55  Aligned_cols=73  Identities=22%  Similarity=0.241  Sum_probs=45.3

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhc--CCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHM--SNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi--~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      .++|+|+||+......++....   -+.+...|+  .+++.+|+++ +++. .  ...+.+...+-..+...|.|+||.|
T Consensus        49 ~~~lvDtpG~~~~~~~~~~~~~---~e~i~~~~~~~~~~d~vi~Vv-Das~-~--~~~~~l~~~l~~~~~pvilv~NK~D  121 (256)
T 3iby_A           49 LIEITDLPGVYSLVANAEGISQ---DEQIAAQSVIDLEYDCIINVI-DACH-L--ERHLYLTSQLFELGKPVVVALNMMD  121 (256)
T ss_dssp             EEEEEECCCCSSCC------CH---HHHHHHHHHHHSCCSEEEEEE-EGGG-H--HHHHHHHHHHTTSCSCEEEEEECHH
T ss_pred             EEEEEeCCCcccccccccCCCH---HHHHHHHHHhhCCCCEEEEEe-eCCC-c--hhHHHHHHHHHHcCCCEEEEEEChh
Confidence            8999999999765543221111   234666777  7788666555 4443 2  2334455555556789999999999


Q ss_pred             hh
Q psy8958         150 QQ  151 (294)
Q Consensus       150 ~~  151 (294)
                      +.
T Consensus       122 l~  123 (256)
T 3iby_A          122 IA  123 (256)
T ss_dssp             HH
T ss_pred             cC
Confidence            75

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.98  E-value=0.01  Score=48.39  Aligned_cols=73  Identities=21%  Similarity=0.363  Sum_probs=47.9

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCC--ceEEEeccCCCcchhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPN--AIILCIQDGSVDAERS--NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~--sIILaV~~a~~D~ans--~al~lar~~DP~G~RTIGVlTK  147 (294)
                      .++++|+||+.....   +....+..+.+...|+....  .+++.|+++......+  ..++..+..   +...|.|+||
T Consensus        69 ~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~---~~p~i~v~nK  142 (195)
T 3pqc_A           69 KYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL---NIPFTIVLTK  142 (195)
T ss_dssp             TEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred             cEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc---CCCEEEEEEC
Confidence            689999999765332   34455667788888887653  3456666665433322  233444444   5789999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       143 ~Dl  145 (195)
T 3pqc_A          143 MDK  145 (195)
T ss_dssp             GGG
T ss_pred             hhc
Confidence            996

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=95.73  E-value=0.004  Score=62.22  Aligned_cols=91  Identities=15%  Similarity=0.257  Sum_probs=53.0

Q ss_pred             ccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHH--HHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhh
Q psy8958          56 VSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRD--LIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQ  133 (294)
Q Consensus        56 ~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~--~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~  133 (294)
                      |....+++.+.++....++|||+||+......    .+..  ....++..|+...+.||++|-+.+.++.. ....+.+.
T Consensus       139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~----~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~-~~~~~l~~  213 (550)
T 2qpt_A          139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQ----RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISD-EFSEAIGA  213 (550)
T ss_dssp             CCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCH-HHHHHHHH
T ss_pred             ccccceEEeccccccCCEEEEECcCCCCcchh----HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCH-HHHHHHHH
Confidence            33444555555554468999999998763211    1111  13466777787788665555443323332 23344455


Q ss_pred             cCCCCCeEEEEeccchhh
Q psy8958         134 MDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       134 ~DP~G~RTIGVlTK~D~~  151 (294)
                      +...+...|.|+||+|+.
T Consensus       214 l~~~~~pvilVlNK~Dl~  231 (550)
T 2qpt_A          214 LRGHEDKIRVVLNKADMV  231 (550)
T ss_dssp             TTTCGGGEEEEEECGGGS
T ss_pred             HHhcCCCEEEEEECCCcc
Confidence            555567899999999974

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.66  E-value=0.04  Score=50.57  Aligned_cols=75  Identities=17%  Similarity=0.255  Sum_probs=50.8

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~RTIGVlTK  147 (294)
                      -..++|+|+||+....     ..+.+....++..|++..+.+++++ +++..+  ....+++.+++..+ +.-.|.|+||
T Consensus        54 ~~~l~l~DTpG~~~~~-----~~l~~~~~~~~~~~l~~ad~il~Vv-D~~~~~~~~~~~i~~~l~~~~~-~~p~ilV~NK  126 (301)
T 1wf3_A           54 RRQIVFVDTPGLHKPM-----DALGEFMDQEVYEALADVNAVVWVV-DLRHPPTPEDELVARALKPLVG-KVPILLVGNK  126 (301)
T ss_dssp             TEEEEEEECCCCCCCC-----SHHHHHHHHHHHHHTSSCSEEEEEE-ETTSCCCHHHHHHHHHHGGGTT-TSCEEEEEEC
T ss_pred             CcEEEEecCccccchh-----hHHHHHHHHHHHHHHhcCCEEEEEE-ECCCCCChHHHHHHHHHHhhcC-CCCEEEEEEC
Confidence            4579999999987532     2455667788899999988665554 544322  23334455555532 4678999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      +|+.
T Consensus       127 ~Dl~  130 (301)
T 1wf3_A          127 LDAA  130 (301)
T ss_dssp             GGGC
T ss_pred             cccC
Confidence            9974

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.65  E-value=0.015  Score=56.12  Aligned_cols=91  Identities=18%  Similarity=0.202  Sum_probs=52.8

Q ss_pred             CccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhh
Q psy8958          53 GKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVS  132 (294)
Q Consensus        53 ~~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar  132 (294)
                      ..+++.+.+...+...+. .++|+|+||+...     .+.+.+.++.++..|+...+.||++ +++...+... -..+++
T Consensus        54 ~~g~t~~~~~~~~~~~~~-~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~V-vD~~~~~~~~-d~~l~~  125 (456)
T 4dcu_A           54 TPGVTRDRIYSSAEWLNY-DFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEADVIIFM-VNGREGVTAA-DEEVAK  125 (456)
T ss_dssp             -------CEEEECTTCSS-CCEEECCCC-----------CCHHHHHHHHHHHHHHCSEEEEE-EESSSCSCHH-HHHHHH
T ss_pred             CCCcceeEEEEEEEECCc-eEEEEECCCCCCc-----chHHHHHHHHHHHhhHhhCCEEEEE-EeCCCCCChH-HHHHHH
Confidence            345666777777766554 8999999998732     2345678888999999999865555 5555423222 223444


Q ss_pred             hcCCCCCeEEEEeccchhh
Q psy8958         133 QMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       133 ~~DP~G~RTIGVlTK~D~~  151 (294)
                      .+...+...|-|++|+|+.
T Consensus       126 ~l~~~~~pvilV~NK~D~~  144 (456)
T 4dcu_A          126 ILYRTKKPVVLAVNKLDNT  144 (456)
T ss_dssp             HHTTCCSCEEEEEECC---
T ss_pred             HHHHcCCCEEEEEECccch
Confidence            4444678899999999964

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.63  E-value=0.026  Score=44.46  Aligned_cols=71  Identities=21%  Similarity=0.386  Sum_probs=47.7

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAERSNVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~ans~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                      .+.|+|+||......      .......+...|+...+.+|+++-..+. ........+..++   .+...+.|+||+|+
T Consensus        50 ~~~l~Dt~G~~~~~~------~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl  120 (161)
T 2dyk_A           50 RFLLVDTGGLWSGDK------WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRR---KGKPVILVATKVDD  120 (161)
T ss_dssp             EEEEEECGGGCSSSS------CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHH---HTCCEEEEEECCCS
T ss_pred             eEEEEECCCCCCccc------hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHh---cCCCEEEEEECccc
Confidence            789999999865431      3455667788899999877776654442 2223344455555   34568999999996


Q ss_pred             h
Q psy8958         151 Q  151 (294)
Q Consensus       151 ~  151 (294)
                      .
T Consensus       121 ~  121 (161)
T 2dyk_A          121 P  121 (161)
T ss_dssp             G
T ss_pred             c
Confidence            4

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=94.72  E-value=0.048  Score=48.49  Aligned_cols=84  Identities=12%  Similarity=0.165  Sum_probs=44.8

Q ss_pred             cceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcC--CCCceEEEeccCCC-cchh--cHHHHhhhh
Q psy8958          59 EVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMS--NPNAIILCIQDGSV-DAER--SNVTDLVSQ  133 (294)
Q Consensus        59 ~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~--~p~sIILaV~~a~~-D~an--s~al~lar~  133 (294)
                      ++..+.+... ...++|+|+||+......  .    ....+.+.+|+.  ..+.+|+++ +.+. .+..  ...++..++
T Consensus        76 ~~~~~~~~~~-~~~l~iiDTpG~~~~~~~--~----~~~~~~i~~~~~~~~~d~il~v~-~~d~~~~~~~~~~~~~~l~~  147 (270)
T 1h65_A           76 RPVMVSRSRA-GFTLNIIDTPGLIEGGYI--N----DMALNIIKSFLLDKTIDVLLYVD-RLDAYRVDNLDKLVAKAITD  147 (270)
T ss_dssp             SCEEEEEEET-TEEEEEEECCCSEETTEE--C----HHHHHHHHHHTTTCEECEEEEEE-ESSCCCCCHHHHHHHHHHHH
T ss_pred             eeEEEEEeeC-CeEEEEEECCCCCCCccc--h----HHHHHHHHHHhhcCCCCEEEEEE-eCCCCcCCHHHHHHHHHHHH
Confidence            4444555443 346999999998764321  1    222334455654  355555553 2221 2332  234444443


Q ss_pred             cCCC--CCeEEEEeccchh
Q psy8958         134 MDPQ--GKRTIFVLTKVSQ  150 (294)
Q Consensus       134 ~DP~--G~RTIGVlTK~D~  150 (294)
                      .-+.  +...|.|+||+|+
T Consensus       148 ~~~~~~~~~iivV~nK~Dl  166 (270)
T 1h65_A          148 SFGKGIWNKAIVALTHAQF  166 (270)
T ss_dssp             HHCGGGGGGEEEEEECCSC
T ss_pred             HhCcccccCEEEEEECccc
Confidence            3221  2579999999995

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=94.64  E-value=0.035  Score=44.53  Aligned_cols=76  Identities=13%  Similarity=0.191  Sum_probs=40.0

Q ss_pred             EEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-hh-cHHHH----hhhhcC
Q psy8958          62 SMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-ER-SNVTD----LVSQMD  135 (294)
Q Consensus        62 ~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-an-s~al~----lar~~D  135 (294)
                      .+.+.+.....+.|+|+||..             ..+.+...|++..+.+|+++-..+.+. .+ ...+.    .+....
T Consensus        49 ~~~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  115 (182)
T 1ky3_A           49 EVTVDGDKVATMQVWDTAGQE-------------RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNS  115 (182)
T ss_dssp             EECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSC
T ss_pred             EEEEcCCcEEEEEEEECCCCh-------------HhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccC
Confidence            344443445689999999922             234567789999887777664433211 11 11111    222223


Q ss_pred             CCCCeEEEEeccchh
Q psy8958         136 PQGKRTIFVLTKVSQ  150 (294)
Q Consensus       136 P~G~RTIGVlTK~D~  150 (294)
                      ..+...+-|+||+|+
T Consensus       116 ~~~~p~ilv~nK~Dl  130 (182)
T 1ky3_A          116 PETFPFVILGNKIDA  130 (182)
T ss_dssp             TTTCCEEEEEECTTS
T ss_pred             cCCCcEEEEEECCcc
Confidence            456789999999995

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=94.49  E-value=0.075  Score=43.76  Aligned_cols=69  Identities=19%  Similarity=0.217  Sum_probs=43.7

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-ch-hcHHHHhhhhcCC---CCCeEEEE
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AE-RSNVTDLVSQMDP---QGKRTIFV  144 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~a-ns~al~lar~~DP---~G~RTIGV  144 (294)
                      ...+.|+|+||..             ....+...|+++.+.+|+++-..+.+ +. -...+...+...+   .+...|-|
T Consensus        72 ~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv  138 (208)
T 2yc2_C           72 SVELFLLDTAGSD-------------LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV  138 (208)
T ss_dssp             EEEEEEEETTTTH-------------HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEE
T ss_pred             EEEEEEEECCCcH-------------HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEE
Confidence            3579999999962             34567889999988776665443321 11 1223444555544   57889999


Q ss_pred             eccchhh
Q psy8958         145 LTKVSQQ  151 (294)
Q Consensus       145 lTK~D~~  151 (294)
                      +||.|+.
T Consensus       139 ~nK~Dl~  145 (208)
T 2yc2_C          139 ANKTDLP  145 (208)
T ss_dssp             EECC---
T ss_pred             EECcccc
Confidence            9999963

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=94.43  E-value=0.055  Score=48.59  Aligned_cols=89  Identities=20%  Similarity=0.227  Sum_probs=48.6

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhc--CCCCceEEEeccCCCcchhcHHHHhhh
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHM--SNPNAIILCIQDGSVDAERSNVTDLVS  132 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi--~~p~sIILaV~~a~~D~ans~al~lar  132 (294)
                      +++-+...-.+...+ ..+.|+|+||+.............+   .+.+.|+  ..+..+|+ |++++.--.+.......+
T Consensus        35 g~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~e---~i~~~~~~~~~~d~ii~-VvD~~~~~~~~~~~~~l~  109 (274)
T 3i8s_A           35 GVTVERKEGQFSTTD-HQVTLVDLPGTYSLTTISSQTSLDE---QIACHYILSGDADLLIN-VVDASNLERNLYLTLQLL  109 (274)
T ss_dssp             TSSSEEEEEEEECSS-CEEEEEECCCCSCSCC----CCHHH---HHHHHHHHHTCCSEEEE-EEEGGGHHHHHHHHHHHH
T ss_pred             CeeEEEEEEEEEeCC-CceEEEECcCCCccccccccCCHHH---HHHHHHHhhcCCCEEEE-EecCCChHHHHHHHHHHH
Confidence            344444444444443 4689999999877553221112222   3455565  56775555 555543212222233333


Q ss_pred             hcCCCCCeEEEEeccchhh
Q psy8958         133 QMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       133 ~~DP~G~RTIGVlTK~D~~  151 (294)
                      +.   +...|.|+||+|+.
T Consensus       110 ~~---~~p~ivv~NK~Dl~  125 (274)
T 3i8s_A          110 EL---GIPCIVALNMLDIA  125 (274)
T ss_dssp             HH---TCCEEEEEECHHHH
T ss_pred             hc---CCCEEEEEECccch
Confidence            33   67899999999974

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=94.31  E-value=0.064  Score=51.37  Aligned_cols=89  Identities=18%  Similarity=0.228  Sum_probs=48.8

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhc
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQM  134 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~  134 (294)
                      +++.+.+...+...+ ..++|+|+||+....     .++.+.++.+...|+.....+|++ +++...+...+ ..+++.+
T Consensus        36 g~T~d~~~~~~~~~~-~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~v-vD~~~~~~~~d-~~~~~~l  107 (436)
T 2hjg_A           36 GVTRDRIYSSAEWLN-YDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEADVIIFM-VNGREGVTAAD-EEVAKIL  107 (436)
T ss_dssp             -----CEEEECTTCS-SCCEEEC--------------CHHHHHHHHHHHHHHHCSEEEEE-EETTTCSCHHH-HHHHHHH
T ss_pred             CCccceEEEEEEECC-ceEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCEEEEE-EeCCCCCCHHH-HHHHHHH
Confidence            445555555555444 379999999986432     226678888999999998866555 45543222221 2344444


Q ss_pred             CCCCCeEEEEeccchhh
Q psy8958         135 DPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       135 DP~G~RTIGVlTK~D~~  151 (294)
                      ...+.-.|-|++|+|+.
T Consensus       108 ~~~~~pvilv~NK~D~~  124 (436)
T 2hjg_A          108 YRTKKPVVLAVNKLDNT  124 (436)
T ss_dssp             TTCCSCEEEEEECCCC-
T ss_pred             HHcCCCEEEEEECccCc
Confidence            44567899999999974

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=94.14  E-value=0.076  Score=43.25  Aligned_cols=68  Identities=10%  Similarity=0.178  Sum_probs=43.7

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlT  146 (294)
                      -..++|+|+||..             ..+.+...|+++.+.+|+++-..+.+ +.+.  ...++.+.....+...|-|+|
T Consensus        61 ~~~~~~~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n  127 (186)
T 1ksh_A           61 GFKLNIWDVGGQK-------------SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFAN  127 (186)
T ss_dssp             TEEEEEEEECCSH-------------HHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred             CEEEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEe
Confidence            4679999999963             23567788999998777665543322 2221  112233333334678999999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       128 K~Dl  131 (186)
T 1ksh_A          128 KQDL  131 (186)
T ss_dssp             CTTS
T ss_pred             CccC
Confidence            9995

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=94.08  E-value=0.069  Score=42.23  Aligned_cols=68  Identities=10%  Similarity=0.198  Sum_probs=42.8

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlT  146 (294)
                      -..+.|+|+||...             .+.+...|+.+.+.+|+++-..+.+ +.+.  ....+.+.....+...|-|+|
T Consensus        43 ~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n  109 (164)
T 1r8s_A           43 NISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN  109 (164)
T ss_dssp             SCEEEEEECCCCGG-------------GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred             CEEEEEEEcCCChh-------------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEE
Confidence            36799999999632             3467788999998877765443321 2211  111222323334678999999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       110 K~Dl  113 (164)
T 1r8s_A          110 KQDL  113 (164)
T ss_dssp             CTTS
T ss_pred             CcCC
Confidence            9995

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=94.05  E-value=0.071  Score=42.35  Aligned_cols=68  Identities=19%  Similarity=0.237  Sum_probs=43.6

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlT  146 (294)
                      -..+.|+|+||...             .+.+...|+++.+.+|+++-..+.+ +..  .....+.+.....+...|-|+|
T Consensus        50 ~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n  116 (171)
T 1upt_A           50 NLKFQVWDLGGLTS-------------IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFAN  116 (171)
T ss_dssp             TEEEEEEEECCCGG-------------GGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred             CEEEEEEECCCChh-------------hhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEE
Confidence            46799999999642             2356778999888776665543321 221  1222344443345678999999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       117 K~Dl  120 (171)
T 1upt_A          117 KQDM  120 (171)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            9995

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.05  E-value=0.3  Score=40.19  Aligned_cols=68  Identities=10%  Similarity=0.117  Sum_probs=44.0

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-h-hcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-E-RSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-a-ns~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ...+.|+|+||...             ...+...|++..+.+|+++-..+.+. . -...+...++..+.+...|-|+||
T Consensus        71 ~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK  137 (192)
T 2fg5_A           71 LHKFLIWDTAGQER-------------FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNK  137 (192)
T ss_dssp             EEEEEEEEECCSGG-------------GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             EEEEEEEcCCCchh-------------hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEC
Confidence            45799999999432             23456778888887776654433221 1 122344555666667889999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      +|+
T Consensus       138 ~Dl  140 (192)
T 2fg5_A          138 CDL  140 (192)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            995

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.99  E-value=0.049  Score=43.83  Aligned_cols=68  Identities=12%  Similarity=0.157  Sum_probs=40.8

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||...             .+.+...|+.+.+.+|+++-..+.+ +.+ ...+..++...+.+...|-|+||.
T Consensus        60 ~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~  126 (180)
T 2g6b_A           60 VKLQMWDTAGQER-------------FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV  126 (180)
T ss_dssp             EEEEEEECCCC---------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECC
T ss_pred             EEEEEEeCCCcHH-------------HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence            4699999999321             2456778888888777765443321 111 233455555555678899999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       127 Dl~  129 (180)
T 2g6b_A          127 DSA  129 (180)
T ss_dssp             STT
T ss_pred             ccC
Confidence            953

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=93.99  E-value=0.1  Score=42.31  Aligned_cols=88  Identities=16%  Similarity=0.276  Sum_probs=51.5

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCC-CCceE--EEeccCCCcchhc------
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSN-PNAII--LCIQDGSVDAERS------  125 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~-p~sII--LaV~~a~~D~ans------  125 (294)
                      +++.++..+.+.     .+.++|+||+....  +.+....+..+.+...|+.. .+.++  +.|++++. +.+.      
T Consensus        33 ~~t~~~~~~~~~-----~~~l~Dt~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s-~~~~~~~~~~  104 (190)
T 2cxx_A           33 GVTRKIIEIEWK-----NHKIIDMPGFGFMM--GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKA-APEIIKRWEK  104 (190)
T ss_dssp             TCTTSCEEEEET-----TEEEEECCCBSCCT--TSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTH-HHHHHHHHHH
T ss_pred             CccceeEEEecC-----CEEEEECCCccccc--cCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchh-hhhHHHhhhc
Confidence            344445555543     89999999976433  23445567788888888876 55433  34455432 2111      


Q ss_pred             -----HHHHhhhhcCCCCCeEEEEeccchh
Q psy8958         126 -----NVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       126 -----~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                           .-.++.+.....+...|.|+||+|+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  134 (190)
T 2cxx_A          105 RGEIPIDVEFYQFLRELDIPTIVAVNKLDK  134 (190)
T ss_dssp             TTCCCHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             cCccHHHHHHHHHHHhcCCceEEEeehHhc
Confidence                 0011223333345779999999996

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=93.96  E-value=0.044  Score=43.43  Aligned_cols=69  Identities=14%  Similarity=0.164  Sum_probs=44.2

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ...+.|+|+||.-.             .+.+...|+.+.+.+|+++-..+.+ +.+ ...+...+.........+-|.||
T Consensus        54 ~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK  120 (170)
T 1z0j_A           54 LHKFLIWDTAGLER-------------FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK  120 (170)
T ss_dssp             EEEEEEEEECCSGG-------------GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEEC
T ss_pred             EEEEEEEcCCCchh-------------hhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEC
Confidence            35699999999732             2356778888888777665443322 111 22345555555556778888899


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      .|+.
T Consensus       121 ~Dl~  124 (170)
T 1z0j_A          121 CDLT  124 (170)
T ss_dssp             TTCG
T ss_pred             Cccc
Confidence            9963

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=93.93  E-value=0.054  Score=51.95  Aligned_cols=89  Identities=17%  Similarity=0.300  Sum_probs=52.7

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLV  131 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~la  131 (294)
                      .+++.+.+.-.+.-.+ ..++|+|+||+.....    ..+.+.++.++..|++..+.||++ +++...+.  .....++.
T Consensus        33 ~g~T~d~~~~~~~~~~-~~~~l~DT~G~~~~~~----~~~~~~~~~~~~~~~~~ad~il~V-~D~~~~~~~~d~~i~~~l  106 (439)
T 1mky_A           33 EGVTRDPVQDTVEWYG-KTFKLVDTCGVFDNPQ----DIISQKMKEVTLNMIREADLVLFV-VDGKRGITKEDESLADFL  106 (439)
T ss_dssp             -----CCSEEEEEETT-EEEEEEECTTTTSSGG----GCCCHHHHHHHHHHHTTCSEEEEE-EETTTCCCHHHHHHHHHH
T ss_pred             CCCccceeeEEEEECC-eEEEEEECCCcccccc----chHHHHHHHHHHHHHHhCCEEEEE-EECCCCCCHHHHHHHHHH
Confidence            3445454444443222 2589999999875321    223466788889999999866555 46554332  22344444


Q ss_pred             hhcCCCCCeEEEEeccchhh
Q psy8958         132 SQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       132 r~~DP~G~RTIGVlTK~D~~  151 (294)
                      ++   .+...|-|++|+|+.
T Consensus       107 ~~---~~~p~ilv~NK~D~~  123 (439)
T 1mky_A          107 RK---STVDTILVANKAENL  123 (439)
T ss_dssp             HH---HTCCEEEEEESCCSH
T ss_pred             HH---cCCCEEEEEeCCCCc
Confidence            44   356789999999964

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=93.90  E-value=0.088  Score=46.61  Aligned_cols=82  Identities=17%  Similarity=0.287  Sum_probs=43.8

Q ss_pred             eEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCC--CCceEEEeccCCC-cchh--cHHHHhhhhcC
Q psy8958          61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSN--PNAIILCIQDGSV-DAER--SNVTDLVSQMD  135 (294)
Q Consensus        61 I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~--p~sIILaV~~a~~-D~an--s~al~lar~~D  135 (294)
                      ....+...+. .++|+|+||+......  .+    ...+.+.+|+..  .. ++|.|.+.+. .+..  ...++..++.-
T Consensus        75 ~~~~~~~~~~-~l~liDTpG~~~~~~~--~~----~~~~~i~~~l~~~~~~-~il~V~~~d~~~~~~~~~~~~~~l~~~~  146 (262)
T 3def_A           75 VMVSRTMGGF-TINIIDTPGLVEAGYV--NH----QALELIKGFLVNRTID-VLLYVDRLDVYAVDELDKQVVIAITQTF  146 (262)
T ss_dssp             EEEEEEETTE-EEEEEECCCSEETTEE--CH----HHHHHHHHHTTTCEEC-EEEEEEESSCSCCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEECCe-eEEEEECCCCCCcccc--hH----HHHHHHHHHHhcCCCC-EEEEEEcCCCCCCCHHHHHHHHHHHHHh
Confidence            3444443333 8999999998764421  22    233344445543  34 4444533322 2332  24555555432


Q ss_pred             CCC--CeEEEEeccchh
Q psy8958         136 PQG--KRTIFVLTKVSQ  150 (294)
Q Consensus       136 P~G--~RTIGVlTK~D~  150 (294)
                      ..+  ...|.|+||+|+
T Consensus       147 ~~~~~~~~ivv~nK~Dl  163 (262)
T 3def_A          147 GKEIWCKTLLVLTHAQF  163 (262)
T ss_dssp             CGGGGGGEEEEEECTTC
T ss_pred             chhhhcCEEEEEeCccc
Confidence            221  378999999995

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=93.87  E-value=0.14  Score=42.83  Aligned_cols=79  Identities=16%  Similarity=0.262  Sum_probs=47.0

Q ss_pred             ceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHH-HhhhhcCCCCceEEEeccCCCcchhcHHHH----hhhh-
Q psy8958          60 VISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQ-MTQTHMSNPNAIILCIQDGSVDAERSNVTD----LVSQ-  133 (294)
Q Consensus        60 ~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~-Lv~~Yi~~p~sIILaV~~a~~D~ans~al~----lar~-  133 (294)
                      ...+.+.+.....|.|+|+||...             .+. +...|+...+.+|+++-..+.+-....+.+    +.+. 
T Consensus        43 ~~~~~~~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  109 (214)
T 2fh5_B           43 SAIYKVNNNRGNSLTLIDLPGHES-------------LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDS  109 (214)
T ss_dssp             EEEEECSSTTCCEEEEEECCCCHH-------------HHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEecCCCccEEEEEECCCChh-------------HHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhh
Confidence            334555554457799999999531             233 777888888877766544331111112222    2221 


Q ss_pred             -cCCCCCeEEEEeccchhh
Q psy8958         134 -MDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       134 -~DP~G~RTIGVlTK~D~~  151 (294)
                       ....+...|-|+||+|+.
T Consensus       110 ~~~~~~~piilv~nK~Dl~  128 (214)
T 2fh5_B          110 MALKNSPSLLIACNKQDIA  128 (214)
T ss_dssp             HTSTTCCEEEEEEECTTST
T ss_pred             hhcccCCCEEEEEECCCCC
Confidence             234457899999999963

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=93.77  E-value=0.11  Score=43.54  Aligned_cols=67  Identities=18%  Similarity=0.248  Sum_probs=42.7

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcC----CCCCeEEEEe
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMD----PQGKRTIFVL  145 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~D----P~G~RTIGVl  145 (294)
                      ...|.|+|+||.             +..+.+...|++..+.+|+++ +++....-..+......+-    ..+...|.|+
T Consensus        83 ~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~iilV~-D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~  148 (217)
T 2f7s_A           83 KVHLQLWDTAGQ-------------ERFRSLTTAFFRDAMGFLLMF-DLTSQQSFLNVRNWMSQLQANAYCENPDIVLIG  148 (217)
T ss_dssp             EEEEEEEEEESH-------------HHHHHHHHHHHTTCCEEEEEE-ETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEE
T ss_pred             eEEEEEEECCCc-------------HhHHhHHHHHhcCCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEE
Confidence            356999999992             334677888999888776655 4443222222223333332    1467889999


Q ss_pred             ccchh
Q psy8958         146 TKVSQ  150 (294)
Q Consensus       146 TK~D~  150 (294)
                      ||.|+
T Consensus       149 NK~Dl  153 (217)
T 2f7s_A          149 NKADL  153 (217)
T ss_dssp             ECTTC
T ss_pred             ECCcc
Confidence            99995

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=93.71  E-value=0.079  Score=42.80  Aligned_cols=66  Identities=12%  Similarity=0.098  Sum_probs=42.0

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc---HHHHhhhhcCC-CCCeEEEEec
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS---NVTDLVSQMDP-QGKRTIFVLT  146 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans---~al~lar~~DP-~G~RTIGVlT  146 (294)
                      ..+.|+|+||..             ..+.+...|+++.+.+|+++-..+. ..-.   ..+........ .+...|.|+|
T Consensus        70 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~n  135 (195)
T 3bc1_A           70 IHLQLWDTAGLE-------------RFRSLTTAFFRDAMGFLLLFDLTNE-QSFLNVRNWISQLQMHAYSENPDIVLCGN  135 (195)
T ss_dssp             EEEEEEEECCSG-------------GGHHHHHHTTTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSSSSSCCEEEEEE
T ss_pred             EEEEEEeCCCcH-------------HHHHHHHHHHcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            479999999962             1345788899998877766544332 1111   22233333322 4678999999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       136 K~Dl  139 (195)
T 3bc1_A          136 KSDL  139 (195)
T ss_dssp             CTTC
T ss_pred             Cccc
Confidence            9995

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=93.68  E-value=0.036  Score=53.41  Aligned_cols=76  Identities=14%  Similarity=0.282  Sum_probs=44.2

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~  151 (294)
                      .++|+|+||+.+........+-...++  ...|+...+.+| .|++++..+..++ .+++..+...|.-.|-|++|+|+.
T Consensus       244 ~~~l~DT~G~~~~~~~~~~~e~~~~~~--~~~~~~~ad~~l-lviD~~~~~~~~~-~~~~~~~~~~~~~~ilv~NK~Dl~  319 (456)
T 4dcu_A          244 EFVIVDTAGMRKKGKVYETTEKYSVLR--ALKAIDRSEVVA-VVLDGEEGIIEQD-KRIAGYAHEAGKAVVIVVNKWDAV  319 (456)
T ss_dssp             EEEETTGGGTTTBTTBCCCCSHHHHHH--HHHHHHHCSEEE-EEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGS
T ss_pred             eEEEEECCCCCcCcccchHHHHHHHHH--HHHHHhhCCEEE-EEEeCCCCcCHHH-HHHHHHHHHcCCCEEEEEEChhcC
Confidence            799999999987654322212111111  234677777554 4566665444333 233333333578899999999963

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=93.66  E-value=0.044  Score=43.09  Aligned_cols=67  Identities=15%  Similarity=0.150  Sum_probs=41.0

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHH-HHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNV-TDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~a-l~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||...             ...+...|+++.+.+|+++-..+.+ +.+ ... ..+.+.....+...|.|+||
T Consensus        51 ~~~~l~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK  117 (167)
T 1kao_A           51 SVLEILDTAGTEQ-------------FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNK  117 (167)
T ss_dssp             EEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEEC
T ss_pred             EEEEEEECCCchh-------------hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            4589999999421             1345667787778776665544321 111 111 12344445567889999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       118 ~Dl  120 (167)
T 1kao_A          118 VDL  120 (167)
T ss_dssp             GGG
T ss_pred             Ccc
Confidence            996

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=93.65  E-value=0.04  Score=43.78  Aligned_cols=68  Identities=15%  Similarity=0.133  Sum_probs=39.1

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-hh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-ER-SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-an-s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..|.|+|+||...             .+.+...|+++.+.+|+++-..+.+- .+ ...+...+...+.+...+-|+||.
T Consensus        55 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~  121 (170)
T 1z08_A           55 VNLAIWDTAGQER-------------FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI  121 (170)
T ss_dssp             EEEEEEECCCC--------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECG
T ss_pred             EEEEEEECCCcHh-------------hhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECc
Confidence            4689999999321             23566778888887776654433221 11 122333444444457789999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       122 Dl~  124 (170)
T 1z08_A          122 DLE  124 (170)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            963

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=93.63  E-value=0.13  Score=45.76  Aligned_cols=70  Identities=19%  Similarity=0.338  Sum_probs=42.2

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhc--CCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHM--SNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi--~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||........    ..   +.+...|+  ..+..+| .|++++. +.  ..+.+..++-..+...|.|+||+
T Consensus        52 ~~~~l~DtpG~~~~~~~~----~~---e~v~~~~~~~~~~d~ii-~V~D~t~-~~--~~~~~~~~l~~~~~pvilv~NK~  120 (258)
T 3a1s_A           52 YTINLIDLPGTYSLGYSS----ID---EKIARDYLLKGDADLVI-LVADSVN-PE--QSLYLLLEILEMEKKVILAMTAI  120 (258)
T ss_dssp             EEEEEEECCCCSSCCSSS----HH---HHHHHHHHHHSCCSEEE-EEEETTS-CH--HHHHHHHHHHTTTCCEEEEEECH
T ss_pred             eEEEEEECCCcCccCCCC----HH---HHHHHHHHhhcCCCEEE-EEeCCCc-hh--hHHHHHHHHHhcCCCEEEEEECc
Confidence            579999999987543221    11   23455565  4666555 4555553 22  22334444444578899999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       121 Dl~  123 (258)
T 3a1s_A          121 DEA  123 (258)
T ss_dssp             HHH
T ss_pred             CCC
Confidence            975

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.55  E-value=0.07  Score=43.71  Aligned_cols=67  Identities=15%  Similarity=0.244  Sum_probs=41.0

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||...             .+.+...|+++.+.+|+++-..+.+ +...  ....+.+.....+...|-|+||
T Consensus        60 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK  126 (187)
T 1zj6_A           60 TRFLMWDIGGQES-------------LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANK  126 (187)
T ss_dssp             EEEEEEECCC-----------------CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEEC
T ss_pred             EEEEEEECCCCHh-------------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEEC
Confidence            6799999999732             2346678888888777665544332 2221  1123333333456889999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       127 ~Dl  129 (187)
T 1zj6_A          127 QDV  129 (187)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            995

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=93.53  E-value=0.074  Score=41.75  Aligned_cols=67  Identities=6%  Similarity=0.117  Sum_probs=41.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHH-HhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVT-DLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al-~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||...             .+.+...|+...+.+|+++-..+.+ +.+ ...+ .+.+.....+...+.|+||
T Consensus        52 ~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK  118 (168)
T 1u8z_A           52 VQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK  118 (168)
T ss_dssp             EEEEEEECCC----------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEEC
T ss_pred             EEEEEEECCCcch-------------hHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEC
Confidence            4799999999321             2356778888888777666544321 111 1112 2333444457889999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      +|+
T Consensus       119 ~Dl  121 (168)
T 1u8z_A          119 SDL  121 (168)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            996

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=93.39  E-value=0.065  Score=44.15  Aligned_cols=68  Identities=18%  Similarity=0.203  Sum_probs=42.8

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlT  146 (294)
                      ...+.|+|+||..             ..+.+...|+++.+.+|+++-..+.+ +..  .....+.+.....+...|.|+|
T Consensus        66 ~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N  132 (188)
T 1zd9_A           66 NVTIKLWDIGGQP-------------RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN  132 (188)
T ss_dssp             TEEEEEEEECCSH-------------HHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEE
T ss_pred             CEEEEEEECCCCH-------------hHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEE
Confidence            4578999999943             23457788898888777665443321 221  1112333333335677999999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |+|+
T Consensus       133 K~Dl  136 (188)
T 1zd9_A          133 KRDL  136 (188)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            9995

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=93.29  E-value=0.05  Score=44.45  Aligned_cols=67  Identities=15%  Similarity=0.244  Sum_probs=42.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||...             .+.+...|+++.+.+|+++-..+.+ +...  ....+.+.....+...|-|+||
T Consensus        65 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK  131 (181)
T 2h17_A           65 TRFLMWDIGGQES-------------LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANK  131 (181)
T ss_dssp             EEEEEEEESSSGG-------------GTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred             EEEEEEECCCCHh-------------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEEC
Confidence            6899999999743             2345678999888776665443321 2211  1122333333456889999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       132 ~Dl  134 (181)
T 2h17_A          132 QDV  134 (181)
T ss_dssp             TTS
T ss_pred             CCc
Confidence            995

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=93.27  E-value=0.096  Score=42.38  Aligned_cols=67  Identities=15%  Similarity=0.125  Sum_probs=43.7

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-hh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-ER-SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-an-s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||...             .+.+...|+++.+.+|+++-..+.+- .+ ...+...+.....+...|.|+||+
T Consensus        59 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~  125 (186)
T 2bme_A           59 VKLQIWDTAGQER-------------FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK  125 (186)
T ss_dssp             EEEEEEEECCSGG-------------GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred             EEEEEEeCCCcHH-------------HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence            4799999999421             24578889999987776665443211 11 122333455545567899999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       126 Dl  127 (186)
T 2bme_A          126 DL  127 (186)
T ss_dssp             GG
T ss_pred             cc
Confidence            96

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=93.05  E-value=0.13  Score=42.16  Aligned_cols=67  Identities=16%  Similarity=0.145  Sum_probs=42.1

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHH-HHhhhhcCCCCceEEEeccCCCc-chh-cHHHH-hhhhcCCCCCeEEEEec
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIR-QMTQTHMSNPNAIILCIQDGSVD-AER-SNVTD-LVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~-~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~-lar~~DP~G~RTIGVlT  146 (294)
                      ..++|+|+||.-             ..+ .+...|+++.+.+|+++-..+.+ +.+ ...+. +.+.....+...|-|+|
T Consensus        69 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  135 (189)
T 1z06_A           69 IKIQLWDTAGQE-------------RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGN  135 (189)
T ss_dssp             EEEEEEECCCSH-------------HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEE
T ss_pred             EEEEEEECCCch-------------hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            579999999932             233 67888999888776655443321 111 11222 33334455678999999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |+|+
T Consensus       136 K~Dl  139 (189)
T 1z06_A          136 KCDL  139 (189)
T ss_dssp             CTTC
T ss_pred             Cccc
Confidence            9995

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=93.02  E-value=0.069  Score=42.64  Aligned_cols=67  Identities=10%  Similarity=0.112  Sum_probs=42.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-hh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-ER-SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-an-s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||...             .+.+...|+++.+.+|+++-..+.+. .+ ...+...+.....+...|.|+||.
T Consensus        64 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~  130 (179)
T 1z0f_A           64 IKLQIWDTAGQER-------------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA  130 (179)
T ss_dssp             EEEEEEECTTGGG-------------TCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred             EEEEEEECCCChH-------------hhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence            4699999999321             23467788888887766554433211 11 122334555554567899999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       131 Dl  132 (179)
T 1z0f_A          131 DL  132 (179)
T ss_dssp             TC
T ss_pred             cc
Confidence            95

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=92.99  E-value=0.065  Score=44.42  Aligned_cols=67  Identities=13%  Similarity=0.199  Sum_probs=43.9

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..++|+|+||...             ...+...|+++.+.+|+++-..+.+ +.+ ...+...+...+.+...|-|+||+
T Consensus        75 ~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~  141 (192)
T 2il1_A           75 IRLQIWDTAGQER-------------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKL  141 (192)
T ss_dssp             EEEEEEEECCSGG-------------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred             EEEEEEeCCCcHH-------------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence            5699999999321             2356677888888766655433321 111 122456666667778899999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       142 Dl  143 (192)
T 2il1_A          142 DC  143 (192)
T ss_dssp             GG
T ss_pred             cc
Confidence            96

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.89  E-value=0.052  Score=45.11  Aligned_cols=67  Identities=16%  Similarity=0.116  Sum_probs=43.5

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..++|+|+||....             +.+...|+...+.+|+++-..+.+ +.. ...+..++...+.+...|.|+||+
T Consensus        69 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~  135 (213)
T 3cph_A           69 VKLQLWDTAGQERF-------------RTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS  135 (213)
T ss_dssp             EEEEEECCTTGGGG-------------TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECT
T ss_pred             EEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence            46999999994332             234677888888777665443321 111 233455555556678899999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       136 Dl  137 (213)
T 3cph_A          136 DM  137 (213)
T ss_dssp             TC
T ss_pred             CC
Confidence            95

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=92.87  E-value=0.088  Score=43.10  Aligned_cols=69  Identities=14%  Similarity=0.180  Sum_probs=42.5

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc-HHH-Hhhhh-----c--CCCC
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS-NVT-DLVSQ-----M--DPQG  138 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans-~al-~lar~-----~--DP~G  138 (294)
                      ....+.|+|+||...             .+.+...|++..+.+|+++-..+.+ +.+. ..+ .+.+.     .  +..+
T Consensus        61 ~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (199)
T 4bas_A           61 GRVAFTVFDMGGAKK-------------FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGR  127 (199)
T ss_dssp             TTEEEEEEEECCSGG-------------GGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCB
T ss_pred             CCEEEEEEECCCCHh-------------HHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCC
Confidence            345799999999632             2457778999998777766554432 2211 112 22221     1  1125


Q ss_pred             CeEEEEeccchh
Q psy8958         139 KRTIFVLTKVSQ  150 (294)
Q Consensus       139 ~RTIGVlTK~D~  150 (294)
                      .-.|.|+||.|+
T Consensus       128 ~piilv~NK~Dl  139 (199)
T 4bas_A          128 VPFLFFANKMDA  139 (199)
T ss_dssp             CCEEEEEECTTS
T ss_pred             CCEEEEEECcCC
Confidence            678999999995

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=92.79  E-value=0.036  Score=43.96  Aligned_cols=67  Identities=15%  Similarity=0.106  Sum_probs=41.7

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||....             ..+...|+++.+.+|+++-..+.+ +.+ ...+...+...+.+...|.|+||.
T Consensus        52 ~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~  118 (170)
T 1g16_A           52 VKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS  118 (170)
T ss_dssp             EEEEEECCTTGGGT-------------SCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred             EEEEEEeCCCChhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence            46899999994332             234567888877666655443321 111 233444555555567899999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       119 Dl  120 (170)
T 1g16_A          119 DM  120 (170)
T ss_dssp             TC
T ss_pred             cC
Confidence            95

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=92.78  E-value=0.23  Score=47.80  Aligned_cols=80  Identities=16%  Similarity=0.199  Sum_probs=49.4

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--------hhc
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--------ERS  125 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--------ans  125 (294)
                      .+++-+.....+..++. .++|+|+||..            +.+ ..+..|++..+.+||+|-...-.+        .+.
T Consensus        79 ~GiTid~~~~~~~~~~~-~~~iiDTPGh~------------~f~-~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~  144 (439)
T 3j2k_7           79 KGKTVEVGRAYFETEKK-HFTILDAPGHK------------SFV-PNMIGGASQADLAVLVISARKGEFETGFEKGGQTR  144 (439)
T ss_pred             cCceEEEeEEEEecCCe-EEEEEECCChH------------HHH-HHHHhhHhhCCEEEEEEECCCCccccccCCCchHH
Confidence            34555555555555554 89999999942            223 344556777786666554433222        344


Q ss_pred             HHHHhhhhcCCCCCe-EEEEeccchh
Q psy8958         126 NVTDLVSQMDPQGKR-TIFVLTKVSQ  150 (294)
Q Consensus       126 ~al~lar~~DP~G~R-TIGVlTK~D~  150 (294)
                      +.+.+++..   |.. .|-|+||.|+
T Consensus       145 e~l~~~~~~---~v~~iIvviNK~Dl  167 (439)
T 3j2k_7          145 EHAMLAKTA---GVKHLIVLINKMDD  167 (439)
T ss_pred             HHHHHHHHc---CCCeEEEEeecCCC
Confidence            555666654   444 8999999996

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=92.78  E-value=0.11  Score=42.95  Aligned_cols=68  Identities=12%  Similarity=0.134  Sum_probs=44.5

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ...+.|+|+||...             .+.+...|+++.+.+|+++-..+.+ +.+ ...+...+...+.+...|.|+||
T Consensus        56 ~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK  122 (203)
T 1zbd_A           56 RIKLQIWDTAGLER-------------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNK  122 (203)
T ss_dssp             EEEEEEEEECCSGG-------------GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEEC
T ss_pred             EEEEEEEECCCchh-------------hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence            35799999999632             2457788999888776665443321 111 12334455555566889999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      +|+
T Consensus       123 ~Dl  125 (203)
T 1zbd_A          123 CDM  125 (203)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            996

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=92.77  E-value=0.66  Score=37.70  Aligned_cols=74  Identities=11%  Similarity=0.196  Sum_probs=42.7

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC--cchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV--DAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~--D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      .+.++|+||+....     ......--.....|+...+.+|+++ +++.  .......+...++..+.+.-.|.|+||+|
T Consensus        53 ~~~l~Dt~G~~~~~-----~~~~~~~~~~~~~~~~~ad~~i~v~-D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~D  126 (172)
T 2gj8_A           53 PLHIIDTAGLREAS-----DEVERIGIERAWQEIEQADRVLFMV-DGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD  126 (172)
T ss_dssp             EEEEEECCCCSCCS-----SHHHHHHHHHHHHHHHTCSEEEEEE-ETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred             EEEEEECCCcccch-----hHHHHHHHHHHHHHHHhCCEEEEEE-ECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECcc
Confidence            48999999986432     1111111111335677777665554 4432  22233445555555555677999999999


Q ss_pred             hh
Q psy8958         150 QQ  151 (294)
Q Consensus       150 ~~  151 (294)
                      +.
T Consensus       127 l~  128 (172)
T 2gj8_A          127 IT  128 (172)
T ss_dssp             HH
T ss_pred             CC
Confidence            63

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=92.76  E-value=0.057  Score=44.16  Aligned_cols=67  Identities=12%  Similarity=0.160  Sum_probs=43.5

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||....             +.+...|+...+.+|+++-..+.+-  .-...+.....+-+.+...|-|+||.
T Consensus        65 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~  131 (196)
T 3tkl_A           65 IKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC  131 (196)
T ss_dssp             EEEEEEEECCSGGG-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred             EEEEEEECCCcHhh-------------hhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence            47999999994321             2456778888887776654443211  11223445555656678899999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       132 Dl  133 (196)
T 3tkl_A          132 DL  133 (196)
T ss_dssp             TC
T ss_pred             cc
Confidence            95

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=92.75  E-value=0.1  Score=42.65  Aligned_cols=68  Identities=13%  Similarity=0.137  Sum_probs=42.9

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlT  146 (294)
                      -..+.++|+||.....             .+...|+++.+.+|+++-..+.+ +.+  ....++.+.....+...|-|+|
T Consensus        65 ~~~~~~~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n  131 (189)
T 2x77_A           65 NISFEVWDLGGQTGVR-------------PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFAN  131 (189)
T ss_dssp             TEEEEEEEECCSSSSC-------------CCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEE
T ss_pred             CEEEEEEECCCCHhHH-------------HHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEE
Confidence            4679999999964322             23567888888777665443321 221  1223344444455778999999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       132 K~Dl  135 (189)
T 2x77_A          132 KQDL  135 (189)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            9995

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.74  E-value=0.087  Score=41.54  Aligned_cols=68  Identities=9%  Similarity=0.036  Sum_probs=41.4

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHH---HHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNV---TDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~a---l~lar~~DP~G~RTIGVlT  146 (294)
                      ...+.|+|+||...             ...+...|+++.+.+|+++-..+. ..-..+   +....+.-..+...+.|+|
T Consensus        51 ~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~n  116 (170)
T 1ek0_A           51 TVKFEIWDTAGQER-------------FASLAPXYYRNAQAALVVYDVTKP-QSFIKARHWVKELHEQASKDIIIALVGN  116 (170)
T ss_dssp             EEEEEEEEECCSGG-------------GGGGHHHHHTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEEEEEEECCCChh-------------hhhhhhhhhccCcEEEEEEecCCh-HHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence            34799999999432             234577888888877666544332 111122   2233333344577889999


Q ss_pred             cchhh
Q psy8958         147 KVSQQ  151 (294)
Q Consensus       147 K~D~~  151 (294)
                      |.|+.
T Consensus       117 K~Dl~  121 (170)
T 1ek0_A          117 KIDXL  121 (170)
T ss_dssp             CGGGG
T ss_pred             CCCcc
Confidence            99963

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=92.72  E-value=0.13  Score=41.07  Aligned_cols=67  Identities=13%  Similarity=0.175  Sum_probs=41.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHH----hhhhcCCCCCeEEEE
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTD----LVSQMDPQGKRTIFV  144 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~----lar~~DP~G~RTIGV  144 (294)
                      ..+.|+|+||..             ..+.+...|++..+.+|+++...+.+ +.+ ...+.    .+......+...|.|
T Consensus        56 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v  122 (177)
T 1wms_A           56 VTMQIWDTAGQE-------------RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL  122 (177)
T ss_dssp             EEEEEEECCCCG-------------GGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEE
T ss_pred             EEEEEEeCCCch-------------hhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEE
Confidence            469999999932             13467788999988777665544322 111 11122    222222356788999


Q ss_pred             eccchh
Q psy8958         145 LTKVSQ  150 (294)
Q Consensus       145 lTK~D~  150 (294)
                      +||+|+
T Consensus       123 ~nK~Dl  128 (177)
T 1wms_A          123 GNKIDI  128 (177)
T ss_dssp             EECTTC
T ss_pred             EECCcc
Confidence            999995

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=92.67  E-value=0.28  Score=41.76  Aligned_cols=76  Identities=14%  Similarity=0.225  Sum_probs=39.9

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCC--CCeEEEEe
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQ--GKRTIFVL  145 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~--G~RTIGVl  145 (294)
                      ...+.|+|+||....+.........    ..+..|....+++| .|.+++..  +.......+.+.+...  +...|.|+
T Consensus        75 ~~~~~l~DtpG~~~~~~~~~~~~~~----~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~  149 (228)
T 2qu8_A           75 LNKYQIIDTPGLLDRAFENRNTIEM----TTITALAHINGVIL-FIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGF  149 (228)
T ss_dssp             TEEEEEEECTTTTTSCGGGCCHHHH----HHHHHHHTSSEEEE-EEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEE
T ss_pred             CCeEEEEECCCCcCcccchhhhHHH----HHHHHhhccccEEE-EEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEE
Confidence            3579999999986543211111111    12234555556544 45555532  2212223333333222  56799999


Q ss_pred             ccchh
Q psy8958         146 TKVSQ  150 (294)
Q Consensus       146 TK~D~  150 (294)
                      ||+|+
T Consensus       150 nK~Dl  154 (228)
T 2qu8_A          150 NKIDK  154 (228)
T ss_dssp             ECGGG
T ss_pred             eCccc
Confidence            99996

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=92.65  E-value=0.071  Score=42.90  Aligned_cols=68  Identities=6%  Similarity=0.140  Sum_probs=42.0

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-hh-cHHH-HhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-ER-SNVT-DLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-an-s~al-~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||...             ...+...|+...+.+|+++-..+.+- .+ ...+ .+.+.....+...|.|+||
T Consensus        66 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK  132 (187)
T 2a9k_A           66 VQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK  132 (187)
T ss_dssp             EEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEEC
T ss_pred             EEEEEEECCCCcc-------------cHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            4799999999432             13566778888887776665443211 11 1111 2333444456789999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      +|+.
T Consensus       133 ~Dl~  136 (187)
T 2a9k_A          133 SDLE  136 (187)
T ss_dssp             GGGG
T ss_pred             cccc
Confidence            9963

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=92.61  E-value=0.18  Score=41.37  Aligned_cols=68  Identities=12%  Similarity=0.058  Sum_probs=43.2

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchh---cHHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAER---SNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~an---s~al~lar~~DP~G~RTIGVlT  146 (294)
                      ...++|+|+||....             +.+...|+++.+.+|+++ +++....-   ...+.........+...|.|+|
T Consensus        73 ~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v~-D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~n  138 (193)
T 2oil_A           73 AVKAQIWDTAGLERY-------------RAITSAYYRGAVGALLVF-DLTKHQTYAVVERWLKELYDHAEATIVVMLVGN  138 (193)
T ss_dssp             EEEEEEEEESCCCTT-------------CTTHHHHHTTCCEEEEEE-ETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred             EEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEE
Confidence            357899999997432             245667888888776664 44321111   1233444444455678999999


Q ss_pred             cchhh
Q psy8958         147 KVSQQ  151 (294)
Q Consensus       147 K~D~~  151 (294)
                      |+|+.
T Consensus       139 K~Dl~  143 (193)
T 2oil_A          139 KSDLS  143 (193)
T ss_dssp             CGGGG
T ss_pred             CCCcc
Confidence            99963

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.57  E-value=0.081  Score=44.41  Aligned_cols=69  Identities=19%  Similarity=0.247  Sum_probs=38.6

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCC----CCceEEEeccCCC---cchh--cHHHHhhhhc---CC
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSN----PNAIILCIQDGSV---DAER--SNVTDLVSQM---DP  136 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~----p~sIILaV~~a~~---D~an--s~al~lar~~---DP  136 (294)
                      ....|.|+|+||....             +.+...|+..    .+.+|++ ++++.   .+..  ....++....   .+
T Consensus        53 ~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~~i~v-~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (218)
T 1nrj_B           53 DGSGVTLVDFPGHVKL-------------RYKLSDYLKTRAKFVKGLIFM-VDSTVDPKKLTTTAEFLVDILSITESSCE  118 (218)
T ss_dssp             GGSSCEEEECCCCGGG-------------THHHHHHHHHHGGGEEEEEEE-EETTSCTTCCHHHHHHHHHHHHHHHHHST
T ss_pred             eCceEEEEECCCcHHH-------------HHHHHHHHHhccccCCEEEEE-EECCCChHHHHHHHHHHHHHHhccccccc
Confidence            4468999999997332             2334445443    5666554 44442   2221  1111222211   45


Q ss_pred             CCCeEEEEeccchhh
Q psy8958         137 QGKRTIFVLTKVSQQ  151 (294)
Q Consensus       137 ~G~RTIGVlTK~D~~  151 (294)
                      .+...|.|+||+|+.
T Consensus       119 ~~~p~ilv~nK~Dl~  133 (218)
T 1nrj_B          119 NGIDILIACNKSELF  133 (218)
T ss_dssp             TCCCEEEEEECTTST
T ss_pred             CCCCEEEEEEchHhc
Confidence            678899999999963

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=92.52  E-value=0.064  Score=44.60  Aligned_cols=68  Identities=12%  Similarity=0.160  Sum_probs=41.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..++|+|+||.-.             .+.+...|++..+.+|+++-..+.+ +.+ ...+...+.....+...|.|+||.
T Consensus        77 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~  143 (199)
T 2p5s_A           77 TVLQLWDTAGQER-------------FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKA  143 (199)
T ss_dssp             EEEEEEECTTCTT-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECG
T ss_pred             EEEEEEECCCCcc-------------hhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence            4699999999421             2356777888888777665443321 111 123445555555567899999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       144 Dl~  146 (199)
T 2p5s_A          144 DIR  146 (199)
T ss_dssp             GGH
T ss_pred             ccc
Confidence            964

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=92.50  E-value=0.079  Score=44.07  Aligned_cols=68  Identities=12%  Similarity=0.203  Sum_probs=38.6

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlT  146 (294)
                      ...+.|+|+||...             .+.+...|+++.+.+|+++-..+.+ +.+.  ...++.+.....+.-.|-|+|
T Consensus        72 ~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~N  138 (192)
T 2b6h_A           72 NICFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFAN  138 (192)
T ss_dssp             TEEEEEEECC------------------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred             CEEEEEEECCCCHh-------------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEE
Confidence            36799999999632             2345667888888777655433321 1111  111233333334678999999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |+|+
T Consensus       139 K~Dl  142 (192)
T 2b6h_A          139 KQDM  142 (192)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            9995

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=92.47  E-value=0.3  Score=47.29  Aligned_cols=85  Identities=16%  Similarity=0.217  Sum_probs=52.6

Q ss_pred             cccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCC
Q psy8958          57 SNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDP  136 (294)
Q Consensus        57 S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP  136 (294)
                      +-++....+.-.+...+.|+|+||+.....-++. . .    +-...|+...+.+|+++ ++...-.....++.+++.  
T Consensus        69 T~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~-~-~----~~~~~~l~~aD~vllVv-D~~~~~~~~~~l~~l~~~--  139 (423)
T 3qq5_A           69 TTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRL-R-V----EKARRVFYRADCGILVT-DSAPTPYEDDVVNLFKEM--  139 (423)
T ss_dssp             -CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCC-C-H----HHHHHHHTSCSEEEEEC-SSSCCHHHHHHHHHHHHT--
T ss_pred             eeeeEEEEEEECCCCeEEEEECcCCCcccchhHH-H-H----HHHHHHHhcCCEEEEEE-eCCChHHHHHHHHHHHhc--
Confidence            3344444444444558999999999865432221 1 1    11445777777665554 665444455666777776  


Q ss_pred             CCCeEEEEeccchhh
Q psy8958         137 QGKRTIFVLTKVSQQ  151 (294)
Q Consensus       137 ~G~RTIGVlTK~D~~  151 (294)
                       +...|.|+||.|+.
T Consensus       140 -~~piIvV~NK~Dl~  153 (423)
T 3qq5_A          140 -EIPFVVVVNKIDVL  153 (423)
T ss_dssp             -TCCEEEECCCCTTT
T ss_pred             -CCCEEEEEeCcCCC
Confidence             57799999999964

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=92.47  E-value=0.098  Score=42.13  Aligned_cols=67  Identities=18%  Similarity=0.159  Sum_probs=44.2

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..|.|+|+||....             +.+...|++..+.+|+++-..+.+ +.+.  ..+...++..+ +...|.|+||
T Consensus        53 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK  118 (186)
T 1mh1_A           53 VNLGLWDTAGQEDY-------------DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTK  118 (186)
T ss_dssp             EEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEEC
T ss_pred             EEEEEEECCCCHhH-------------HHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEc
Confidence            46889999997432             356677888888777665543321 2222  24455555555 5778999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      .|+.
T Consensus       119 ~Dl~  122 (186)
T 1mh1_A          119 LDLR  122 (186)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            9964

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=92.46  E-value=0.07  Score=43.83  Aligned_cols=67  Identities=16%  Similarity=0.206  Sum_probs=41.8

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCC--CCCeEEEEe
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDP--QGKRTIFVL  145 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP--~G~RTIGVl  145 (294)
                      ..+.|+|+||...             .+.+...|+++.+.+|+++-..+.+ +..  .....+.+....  .+...|.|+
T Consensus        67 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~  133 (190)
T 2h57_A           67 LSFTVFDMSGQGR-------------YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFA  133 (190)
T ss_dssp             CEEEEEEECCSTT-------------TGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEE
T ss_pred             EEEEEEECCCCHH-------------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEE
Confidence            6899999999432             2356678898888776655443321 222  112233333332  567899999


Q ss_pred             ccchh
Q psy8958         146 TKVSQ  150 (294)
Q Consensus       146 TK~D~  150 (294)
                      ||+|+
T Consensus       134 nK~Dl  138 (190)
T 2h57_A          134 NKMDL  138 (190)
T ss_dssp             ECTTS
T ss_pred             eCcCc
Confidence            99995

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=92.46  E-value=0.18  Score=49.07  Aligned_cols=82  Identities=16%  Similarity=0.246  Sum_probs=51.7

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--------chhc
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--------AERS  125 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--------~ans  125 (294)
                      .+++-+.....+..++ ..++|+|+||...             ...++..|++..+.+||+|-..+-+        ..+.
T Consensus        95 ~GiTi~~~~~~~~~~~-~~~~iiDTPG~~~-------------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~  160 (483)
T 3p26_A           95 RGVTVSICTSHFSTHR-ANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTK  160 (483)
T ss_dssp             CCSSCCCCEEEEECSS-CEEEEECCCCCGG-------------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHH
T ss_pred             cCcceEeeeEEEecCC-ceEEEEECCCcHH-------------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHH
Confidence            3556666666666654 5799999999732             2355667788888776666544422        1233


Q ss_pred             HHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958         126 NVTDLVSQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       126 ~al~lar~~DP~G~RTIGVlTK~D~~  151 (294)
                      +.+.+++...-  ...|-|+||+|+.
T Consensus       161 e~~~~~~~~~~--~~iIvviNK~Dl~  184 (483)
T 3p26_A          161 EHMLLASSLGI--HNLIIAMNKMDNV  184 (483)
T ss_dssp             HHHHHHHHTTC--CCEEEEEECGGGG
T ss_pred             HHHHHHHHcCC--CcEEEEEECcCcc
Confidence            44555655431  3489999999964

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.42  E-value=0.092  Score=43.22  Aligned_cols=76  Identities=12%  Similarity=0.110  Sum_probs=49.4

Q ss_pred             eEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-ch-hcHHHHhhhhcCCCC
Q psy8958          61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AE-RSNVTDLVSQMDPQG  138 (294)
Q Consensus        61 I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~a-ns~al~lar~~DP~G  138 (294)
                      ..+.+.+. ...+.|+|+||             .+..+.+...|++..+.+|+++-..+.+ +. -...+...+...+.+
T Consensus        63 ~~~~~~~~-~~~~~i~Dt~G-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  128 (191)
T 3dz8_A           63 KTVYRHEK-RVKLQIWDTAG-------------QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN  128 (191)
T ss_dssp             EEEEETTT-TEEEEEECHHH-------------HHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred             EEEEECCE-EEEEEEEeCCC-------------hHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence            33444333 35699999999             2344577888999988777665443321 11 123445566666667


Q ss_pred             CeEEEEeccchh
Q psy8958         139 KRTIFVLTKVSQ  150 (294)
Q Consensus       139 ~RTIGVlTK~D~  150 (294)
                      ...|-|+||.|+
T Consensus       129 ~piilv~nK~Dl  140 (191)
T 3dz8_A          129 AQVILVGNKCDM  140 (191)
T ss_dssp             CEEEEEEECTTC
T ss_pred             CCEEEEEECCCC
Confidence            889999999995

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=92.36  E-value=0.13  Score=42.88  Aligned_cols=67  Identities=12%  Similarity=0.074  Sum_probs=42.8

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||..             ....+...|++..+.+|+++-..+.+ +.+ ...+..++.....+.-.|.|+||+
T Consensus        74 ~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~  140 (200)
T 2o52_A           74 VKLQIWDTAGQE-------------RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKK  140 (200)
T ss_dssp             EEEEEECCTTHH-------------HHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECG
T ss_pred             eEEEEEcCCCcH-------------hHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence            579999999932             23456778888888777666444322 111 122333444444567899999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       141 Dl  142 (200)
T 2o52_A          141 DL  142 (200)
T ss_dssp             GG
T ss_pred             Cc
Confidence            96

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=92.36  E-value=0.057  Score=43.15  Aligned_cols=68  Identities=15%  Similarity=0.139  Sum_probs=41.1

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||...             ...+...|+.+.+.+|+++-..+.+ +.. ...+...+...+.+...|.|+||.
T Consensus        63 ~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~  129 (179)
T 2y8e_A           63 VRLQLWDTAGQER-------------FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT  129 (179)
T ss_dssp             EEEEEEEECCSGG-------------GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECG
T ss_pred             EEEEEEECCCcHH-------------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence            4699999999432             2245667888888766655443321 111 122333334334557789999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       130 Dl~  132 (179)
T 2y8e_A          130 DLS  132 (179)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            963

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.32  E-value=0.16  Score=42.99  Aligned_cols=68  Identities=19%  Similarity=0.180  Sum_probs=44.6

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||..             ..+.+...|++..+.+|+++-..+.+ +.+ ...+...+...+.+.-.|.|.||+
T Consensus        75 ~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~  141 (201)
T 2ew1_A           75 VKLQIWDTAGQE-------------RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI  141 (201)
T ss_dssp             EEEEEEEECCSG-------------GGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred             EEEEEEECCCcH-------------HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence            469999999942             13467889999988777665443321 111 233455555556667789999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       142 Dl~  144 (201)
T 2ew1_A          142 DLA  144 (201)
T ss_dssp             GGG
T ss_pred             CCc
Confidence            963

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=92.17  E-value=0.14  Score=41.73  Aligned_cols=67  Identities=10%  Similarity=0.102  Sum_probs=35.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhc-CCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQM-DPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~-DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||..             ....+...|++....+|+++...+.+ +.. ...+...+.. ...+...|.|+||
T Consensus        69 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK  135 (190)
T 3con_A           69 CLLDILDTAGQE-------------EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNK  135 (190)
T ss_dssp             EEEEEEECCC------------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEEC
T ss_pred             EEEEEEECCChH-------------HHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence            469999999932             22356778998888777655443321 111 1222333333 3346789999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      +|+
T Consensus       136 ~Dl  138 (190)
T 3con_A          136 CDL  138 (190)
T ss_dssp             TTC
T ss_pred             CcC
Confidence            995

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=91.98  E-value=0.16  Score=41.05  Aligned_cols=67  Identities=12%  Similarity=0.125  Sum_probs=35.9

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||...             .+.+...|+++...+|+++-..+.+ +.+ ...+..++...+.+...|-|+||.
T Consensus        57 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~  123 (183)
T 2fu5_C           57 IKLQIWDTAGQER-------------FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC  123 (183)
T ss_dssp             EEEEEEEC----------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC-
T ss_pred             EEEEEEcCCCChh-------------hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence            5699999999432             2456778888888777655443321 111 123344444444467889999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       124 Dl  125 (183)
T 2fu5_C          124 DV  125 (183)
T ss_dssp             -C
T ss_pred             cC
Confidence            95

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=91.94  E-value=0.083  Score=42.36  Aligned_cols=65  Identities=12%  Similarity=0.270  Sum_probs=41.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                      ..++|+|+||.....             .+...|+...+.+|+++ +++.. .....++..+.+...+...|.|+||.|+
T Consensus        55 ~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~-d~~~~-~~~~~~~~l~~~~~~~~p~ilv~nK~Dl  119 (178)
T 2lkc_A           55 KKITFLDTPGHEAFT-------------TMRARGAQVTDIVILVV-AADDG-VMPQTVEAINHAKAANVPIIVAINKMDK  119 (178)
T ss_dssp             EEEEESCCCSSSSSS-------------CSCCSSCCCCCEEEEEE-ETTCC-CCHHHHHHHHHHGGGSCCEEEEEETTTS
T ss_pred             ceEEEEECCCCHHHH-------------HHHHHHHhhCCEEEEEE-ECCCC-CcHHHHHHHHHHHhCCCCEEEEEECccC
Confidence            357899999964322             23457788788777666 44322 2234444445544446779999999995

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=91.86  E-value=0.075  Score=43.79  Aligned_cols=67  Identities=12%  Similarity=0.107  Sum_probs=42.9

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||....             +.+...|+++.+.+|+++-..+.+ +.+ ...+..++.....+.-.|-|+||.
T Consensus        70 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~  136 (191)
T 2a5j_A           70 IKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS  136 (191)
T ss_dssp             EEEEEECCTTGGGT-------------SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred             EEEEEEECCCchhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence            47999999994321             235677888888777665543322 111 223444555555567889999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       137 Dl  138 (191)
T 2a5j_A          137 DL  138 (191)
T ss_dssp             TC
T ss_pred             cc
Confidence            95

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=91.85  E-value=0.082  Score=42.70  Aligned_cols=68  Identities=12%  Similarity=0.134  Sum_probs=40.1

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-hh-cHHHH-hhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-ER-SNVTD-LVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-an-s~al~-lar~~DP~G~RTIGVlT  146 (294)
                      ...|.|+|+||...             ...+...|+...+.+|+++...+.+- .. ...+. +.+.....+...|.|+|
T Consensus        51 ~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~n  117 (189)
T 4dsu_A           51 TCLLDILDTAGQEE-------------YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN  117 (189)
T ss_dssp             EEEEEEEECCCC----------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEE
T ss_pred             EEEEEEEECCCcHH-------------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence            34588999999432             22456677888887766655443211 11 11222 33334455678999999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       118 K~Dl  121 (189)
T 4dsu_A          118 KCDL  121 (189)
T ss_dssp             CTTS
T ss_pred             CccC
Confidence            9995

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.85  E-value=0.092  Score=42.40  Aligned_cols=67  Identities=16%  Similarity=0.226  Sum_probs=38.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..++++|+||....             +.+...|+++.+.+|+++-..+.+ +..  .....+.+.....+...|.|+||
T Consensus        62 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK  128 (183)
T 1moz_A           62 LKLNVWDLGGQTSI-------------RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANK  128 (183)
T ss_dssp             EEEEEEEEC----C-------------CTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEEC
T ss_pred             EEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEEC
Confidence            67999999997542             234567888887666655433321 111  11222333333556789999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       129 ~Dl  131 (183)
T 1moz_A          129 QDQ  131 (183)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            995

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=91.77  E-value=0.037  Score=46.08  Aligned_cols=67  Identities=12%  Similarity=0.160  Sum_probs=39.1

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..++|+|+||....             ..+...|+++.+.+|+++-..+.+-  .-...+.....+.+.+...|-|+||.
T Consensus        82 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~  148 (199)
T 3l0i_B           82 IKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC  148 (199)
T ss_dssp             EEEEEECCTTCTTC-------------CCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCS
T ss_pred             EEEEEEECCCcHhH-------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECc
Confidence            46899999994322             2345678888887666554333211  11223445566666678899999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       149 Dl  150 (199)
T 3l0i_B          149 DL  150 (199)
T ss_dssp             SC
T ss_pred             cC
Confidence            95

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=91.70  E-value=0.11  Score=48.17  Aligned_cols=73  Identities=18%  Similarity=0.277  Sum_probs=42.3

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHH---HHhhhhcC-CCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEE
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIR---QMTQTHMS-NPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFV  144 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~---~Lv~~Yi~-~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGV  144 (294)
                      .-+++.|+|.||...  .   ...+.+.++   ..+.+.+. .|..++| |++|.   ..+++++.++.+...-.-+-.|
T Consensus       185 ~~~dvvIiDtpg~~~--~---~~~l~~eL~~l~~~i~~~i~~~p~~vll-Vlda~---t~~~~l~~a~~~~~~~~i~gvV  255 (306)
T 1vma_A          185 RNKDVVIIDTAGRLH--T---KKNLMEELRKVHRVVKKKIPDAPHETLL-VIDAT---TGQNGLVQAKIFKEAVNVTGII  255 (306)
T ss_dssp             TTCSEEEEEECCCCS--C---HHHHHHHHHHHHHHGGGTCTTCCSEEEE-EEEGG---GHHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCCEEEEECCCchh--h---HHHHHHHHHHHHHHHhhccCCCCcEEEE-EEECC---CCHHHHHHHHHHHhcCCCCEEE
Confidence            357899999999521  1   123333333   33444444 3555554 55655   3466777777665443446668


Q ss_pred             eccchh
Q psy8958         145 LTKVSQ  150 (294)
Q Consensus       145 lTK~D~  150 (294)
                      +||.|.
T Consensus       256 lTk~D~  261 (306)
T 1vma_A          256 LTKLDG  261 (306)
T ss_dssp             EECGGG
T ss_pred             EeCCCC
Confidence            999984

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=91.69  E-value=0.16  Score=40.00  Aligned_cols=67  Identities=15%  Similarity=0.168  Sum_probs=40.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHH-hhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTD-LVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~-lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||.....             .+...|+.+.+.+|+++...+.+ +.+ ...+. +.+.....+...|-|+||
T Consensus        51 ~~~~l~D~~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK  117 (167)
T 1c1y_A           51 CMLEILDTAGTEQFT-------------AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK  117 (167)
T ss_dssp             EEEEEEEECSSCSST-------------THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEEC
T ss_pred             EEEEEEECCChHHHH-------------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEEC
Confidence            468999999954321             34556777778777665443321 111 11222 333334556789999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       118 ~Dl  120 (167)
T 1c1y_A          118 CDL  120 (167)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            995

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=91.67  E-value=0.13  Score=41.36  Aligned_cols=66  Identities=12%  Similarity=0.086  Sum_probs=41.2

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--h-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--R-SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--n-s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||...             .+.+...|++..+.+|+++ +++....  + ...+...+.....+...|.|+||
T Consensus        61 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK  126 (181)
T 2efe_B           61 VKFEIWDTAGQER-------------YHSLAPMYYRGAAAAIIVF-DVTNQASFERAKKWVQELQAQGNPNMVMALAGNK  126 (181)
T ss_dssp             EEEEEEECCCSGG-------------GGGGTHHHHTTCSEEEEEE-ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             EEEEEEeCCCChh-------------hhhhhHHHhccCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence            4799999999432             2346678888888776655 4442211  1 12233444444445778999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       127 ~Dl  129 (181)
T 2efe_B          127 SDL  129 (181)
T ss_dssp             TTC
T ss_pred             Ccc
Confidence            995

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=91.61  E-value=0.061  Score=43.03  Aligned_cols=68  Identities=13%  Similarity=0.173  Sum_probs=41.2

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHH-HhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVT-DLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al-~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||....             ..+...|+...+.+|+++-..+.+ +.+ ...+ .+.+.....+...|.|+||
T Consensus        57 ~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK  123 (181)
T 2fn4_A           57 ARLDILDTAGQEEF-------------GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK  123 (181)
T ss_dssp             EEEEEEECCCTTTT-------------SCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEEC
T ss_pred             EEEEEEECCCchhh-------------HHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            46899999995422             234556777777776665433311 111 1111 3335556667889999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      .|+.
T Consensus       124 ~Dl~  127 (181)
T 2fn4_A          124 ADLE  127 (181)
T ss_dssp             GGGG
T ss_pred             cccc
Confidence            9963

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=91.58  E-value=0.23  Score=38.69  Aligned_cols=68  Identities=12%  Similarity=0.125  Sum_probs=40.6

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-h-hcHHHHhhhh-cCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-E-RSNVTDLVSQ-MDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-a-ns~al~lar~-~DP~G~RTIGVlT  146 (294)
                      ...++++|+||....             ..+...|+...+.+|+++...+.+. . ....+...+. ....+...+.|+|
T Consensus        50 ~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~n  116 (166)
T 2ce2_X           50 TCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN  116 (166)
T ss_dssp             EEEEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEE
T ss_pred             EEEEEEEECCCchhh-------------hHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence            356899999994321             1355677777887776665433211 1 1122233333 3334678999999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       117 K~Dl  120 (166)
T 2ce2_X          117 KSDL  120 (166)
T ss_dssp             CTTC
T ss_pred             chhh
Confidence            9995

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=91.50  E-value=0.7  Score=43.60  Aligned_cols=78  Identities=15%  Similarity=0.155  Sum_probs=48.1

Q ss_pred             cccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhcHHHHhhhhcC
Q psy8958          57 SNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERSNVTDLVSQMD  135 (294)
Q Consensus        57 S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans~al~lar~~D  135 (294)
                      +-+...+.+... -..++|+|+||....             ...+..|+...+.+||+|-+.+-. ..+.+.+.+++.. 
T Consensus        62 Ti~~~~~~~~~~-~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-  126 (405)
T 2c78_A           62 TINTAHVEYETA-KRHYSHVDCPGHADY-------------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-  126 (405)
T ss_dssp             CCSCEEEEEECS-SCEEEEEECCCSGGG-------------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-
T ss_pred             CEEeeeeEeccC-CeEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-
Confidence            333344455543 357999999996531             244556778888777666544322 2244455666654 


Q ss_pred             CCCCe-EEEEeccchhh
Q psy8958         136 PQGKR-TIFVLTKVSQQ  151 (294)
Q Consensus       136 P~G~R-TIGVlTK~D~~  151 (294)
                        |.. -|.|+||.|+.
T Consensus       127 --~ip~iivviNK~Dl~  141 (405)
T 2c78_A          127 --GVPYIVVFMNKVDMV  141 (405)
T ss_dssp             --TCCCEEEEEECGGGC
T ss_pred             --CCCEEEEEEECcccc
Confidence              445 67999999964

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=91.39  E-value=0.27  Score=40.13  Aligned_cols=68  Identities=12%  Similarity=0.104  Sum_probs=43.7

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ...+.|+|+||.-..             +.+...|++..+.+|+++-..+.+ +.+ ...+...+...+.+...|.|+||
T Consensus        70 ~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK  136 (189)
T 2gf9_A           70 RIKLQIWDTAGQERY-------------RTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNK  136 (189)
T ss_dssp             EEEEEEEECCSCCSS-------------CCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             EEEEEEEeCCCcHHH-------------hhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence            347999999995322             234678888888776665443321 111 12344555555567889999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       137 ~Dl  139 (189)
T 2gf9_A          137 CDL  139 (189)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            995

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=91.34  E-value=0.24  Score=41.38  Aligned_cols=67  Identities=15%  Similarity=0.120  Sum_probs=43.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||...             .+.+...|+++.+.+|+++-..+.+ +.+ ...+...+...+.+.-.|-|+||.
T Consensus        78 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~  144 (201)
T 2hup_A           78 VKLQIWDTAGQER-------------FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKS  144 (201)
T ss_dssp             EEEEEECCTTCGG-------------GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred             EEEEEEECCCcHh-------------HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence            5799999999421             2457788999888777765443321 111 123344445445567889999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       145 Dl  146 (201)
T 2hup_A          145 DL  146 (201)
T ss_dssp             TC
T ss_pred             cc
Confidence            95

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=91.34  E-value=0.41  Score=43.12  Aligned_cols=84  Identities=25%  Similarity=0.271  Sum_probs=48.3

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcC--CCCceEEEeccCCCcchhcHHHHhhh
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMS--NPNAIILCIQDGSVDAERSNVTDLVS  132 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~--~p~sIILaV~~a~~D~ans~al~lar  132 (294)
                      +++-+.....+.+  ...+.|+|+||........  .  .   +.+...|+.  .+..+ +.|++++. ...  .+.+..
T Consensus        35 g~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~--~--~---e~v~~~~~~~~~~d~v-i~V~D~t~-~e~--~~~~~~  101 (272)
T 3b1v_A           35 GVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYS--P--E---AKVARDYLLSQRADSI-LNVVDATN-LER--NLYLTT  101 (272)
T ss_dssp             CCCCSCEEEECTT--CTTEEEEECCCCSCSSCSS--H--H---HHHHHHHHHTTCCSEE-EEEEEGGG-HHH--HHHHHH
T ss_pred             CCcEEEEEEEEec--CCeEEEEECCCcCccCCCC--h--H---HHHHHHHHhcCCCCEE-EEEecCCc-hHh--HHHHHH
Confidence            3344444555554  4689999999987653221  1  1   345566665  46644 55555553 221  223333


Q ss_pred             hcCCCCCeEEEEeccchhh
Q psy8958         133 QMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       133 ~~DP~G~RTIGVlTK~D~~  151 (294)
                      ++-..|...|.|++|+|+.
T Consensus       102 ~l~~~~~p~ilv~NK~Dl~  120 (272)
T 3b1v_A          102 QLIETGIPVTIALNMIDVL  120 (272)
T ss_dssp             HHHHTCSCEEEEEECHHHH
T ss_pred             HHHhcCCCEEEEEEChhhC
Confidence            3322477899999999975

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=91.25  E-value=0.089  Score=42.59  Aligned_cols=63  Identities=13%  Similarity=0.100  Sum_probs=38.1

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHH---HHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNV---TDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~a---l~lar~~DP~G~RTIGVlTK  147 (294)
                      ..++|+|+||....             ..+...|+.....+|+++ +++....-...   +....+..  +...|.|+||
T Consensus        93 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~-D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK  156 (208)
T 3clv_A           93 IKFDIWDTAGQERY-------------ASIVPLYYRGATCAIVVF-DISNSNTLDRAKTWVNQLKISS--NYIIILVANK  156 (208)
T ss_dssp             EEEEEEECTTGGGC-------------TTTHHHHHTTCSEEEEEE-ETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEEC
T ss_pred             eEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEE-ECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEEC
Confidence            56899999994321             235677888888665554 44432221222   22233322  2789999999


Q ss_pred             ch
Q psy8958         148 VS  149 (294)
Q Consensus       148 ~D  149 (294)
                      +|
T Consensus       157 ~D  158 (208)
T 3clv_A          157 ID  158 (208)
T ss_dssp             TT
T ss_pred             CC
Confidence            98

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=90.98  E-value=0.25  Score=48.11  Aligned_cols=73  Identities=19%  Similarity=0.355  Sum_probs=45.2

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      .-+++.|||+||....+.   .......+..+... + +|..++| |++|..   .+++...|+.++....-|.-|+||.
T Consensus       178 ~~~DvvIIDTaGr~~~~~---d~~lm~el~~i~~~-~-~pd~vlL-VlDa~~---gq~a~~~a~~f~~~~~~~gVIlTKl  248 (433)
T 3kl4_A          178 NKMDIIIVDTAGRHGYGE---ETKLLEEMKEMYDV-L-KPDDVIL-VIDASI---GQKAYDLASRFHQASPIGSVIITKM  248 (433)
T ss_dssp             TTCSEEEEEECCCSSSCC---TTHHHHHHHHHHHH-H-CCSEEEE-EEEGGG---GGGGHHHHHHHHHHCSSEEEEEECG
T ss_pred             cCCCEEEEECCCCccccC---CHHHHHHHHHHHHh-h-CCcceEE-EEeCcc---chHHHHHHHHHhcccCCcEEEEecc
Confidence            357899999999754222   22344555554332 2 4555554 455543   3667777777775545577899999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |.
T Consensus       249 D~  250 (433)
T 3kl4_A          249 DG  250 (433)
T ss_dssp             GG
T ss_pred             cc
Confidence            95

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=90.96  E-value=0.77  Score=43.26  Aligned_cols=74  Identities=16%  Similarity=0.328  Sum_probs=47.0

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc---hh--cHHHHhhhhcCCCCCeEEEEe
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA---ER--SNVTDLVSQMDPQGKRTIFVL  145 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~---an--s~al~lar~~DP~G~RTIGVl  145 (294)
                      ..+.++|+||++..    .|.+..+.++.+.. ++.....+ |.|++++...   ..  ..+.++.+++...+...|-|.
T Consensus       226 ~~v~l~DT~G~i~~----lp~~lve~f~~tl~-~~~~aD~i-l~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~  299 (364)
T 2qtf_A          226 RKIMLVDTVGFIRG----IPPQIVDAFFVTLS-EAKYSDAL-ILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL  299 (364)
T ss_dssp             EEEEEEECCCBCSS----CCGGGHHHHHHHHH-GGGGSSEE-EEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEE
T ss_pred             EEEEEEeCCCchhc----CCHHHHHHHHHHHH-HHHhCCEE-EEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEE
Confidence            46899999998753    24556666666655 55666644 4555554321   11  123455666665667899999


Q ss_pred             ccchh
Q psy8958         146 TKVSQ  150 (294)
Q Consensus       146 TK~D~  150 (294)
                      +|+|+
T Consensus       300 NK~Dl  304 (364)
T 2qtf_A          300 NKIDK  304 (364)
T ss_dssp             ECGGG
T ss_pred             ECCCC
Confidence            99995

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=90.90  E-value=0.095  Score=41.36  Aligned_cols=68  Identities=19%  Similarity=0.141  Sum_probs=40.8

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ...++|+|+||....             +.+...|++..+.+|+++-..+.+ +.. ...+....... .+...+-|+||
T Consensus        53 ~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK  118 (168)
T 1z2a_A           53 DVRLMLWDTAGQEEF-------------DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNK  118 (168)
T ss_dssp             EEEEEEECCTTGGGT-------------TCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEEC
T ss_pred             EEEEEEEcCCCcHhH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence            357999999994321             245677888888777666544322 111 11222222222 34679999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      .|+.
T Consensus       119 ~Dl~  122 (168)
T 1z2a_A          119 IDLL  122 (168)
T ss_dssp             GGGG
T ss_pred             cccC
Confidence            9963

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=90.83  E-value=0.3  Score=39.97  Aligned_cols=67  Identities=9%  Similarity=0.141  Sum_probs=43.9

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||....             +.+...|+++.+.+|+++-..+.+ +.+.  ..+...++..+ +...|.|+||
T Consensus        66 ~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK  131 (194)
T 2atx_A           66 YLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQ  131 (194)
T ss_dssp             EEEEEECCCCSSSS-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEEC
T ss_pred             EEEEEEECCCCcch-------------hHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence            57899999996432             246678899888777665443322 2222  23455555544 5779999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      +|+.
T Consensus       132 ~Dl~  135 (194)
T 2atx_A          132 IDLR  135 (194)
T ss_dssp             TTST
T ss_pred             hhhc
Confidence            9963

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=90.76  E-value=0.31  Score=43.16  Aligned_cols=69  Identities=23%  Similarity=0.322  Sum_probs=39.6

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhc--CCCCceEEEeccCCCcchhcHHHHhhhhcCCCC-CeEEEEeccc
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHM--SNPNAIILCIQDGSVDAERSNVTDLVSQMDPQG-KRTIFVLTKV  148 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi--~~p~sIILaV~~a~~D~ans~al~lar~~DP~G-~RTIGVlTK~  148 (294)
                      .+.|+|+||+.......    ..   ..+...|+  .++..+|++ ++++.--.+   +.+..++-..+ ...|.|+||.
T Consensus        51 ~~~l~DtpG~~~~~~~~----~~---~~~~~~~~~~~~~d~vi~v-~D~~~~~~~---~~~~~~~~~~~~~p~ilv~NK~  119 (271)
T 3k53_A           51 EFLVVDLPGIYSLTAHS----ID---ELIARNFILDGNADVIVDI-VDSTCLMRN---LFLTLELFEMEVKNIILVLNKF  119 (271)
T ss_dssp             EEEEEECCCCSCCCSSC----HH---HHHHHHHHHTTCCSEEEEE-EEGGGHHHH---HHHHHHHHHTTCCSEEEEEECH
T ss_pred             eEEEEeCCCccccccCC----HH---HHHHHHhhhccCCcEEEEE-ecCCcchhh---HHHHHHHHhcCCCCEEEEEECh
Confidence            49999999987644321    11   13455666  566655544 454432222   22222222234 7789999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       120 Dl~  122 (271)
T 3k53_A          120 DLL  122 (271)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            965

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=90.70  E-value=0.3  Score=47.82  Aligned_cols=71  Identities=13%  Similarity=0.256  Sum_probs=47.9

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      -+++.|||+||....     .......++.+ ...+ .|.. +|.|++|..   .+++...|+.+++...=+.-|+||+|
T Consensus       182 ~~DvVIIDTaGrl~~-----d~~lm~el~~i-~~~~-~pd~-vlLVvDA~~---gq~a~~~a~~f~~~~~i~gVIlTKlD  250 (443)
T 3dm5_A          182 GVDIIIVDTAGRHKE-----DKALIEEMKQI-SNVI-HPHE-VILVIDGTI---GQQAYNQALAFKEATPIGSIIVTKLD  250 (443)
T ss_dssp             TCSEEEEECCCCSSC-----CHHHHHHHHHH-HHHH-CCSE-EEEEEEGGG---GGGHHHHHHHHHHSCTTEEEEEECCS
T ss_pred             CCCEEEEECCCcccc-----hHHHHHHHHHH-HHhh-cCce-EEEEEeCCC---chhHHHHHHHHHhhCCCeEEEEECCC
Confidence            378999999997542     23444444444 2233 3554 566666664   47788888988877777778999999


Q ss_pred             hh
Q psy8958         150 QQ  151 (294)
Q Consensus       150 ~~  151 (294)
                      ..
T Consensus       251 ~~  252 (443)
T 3dm5_A          251 GS  252 (443)
T ss_dssp             SC
T ss_pred             Cc
Confidence            53

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=90.62  E-value=0.12  Score=42.88  Aligned_cols=66  Identities=14%  Similarity=0.126  Sum_probs=41.7

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc---HHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS---NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans---~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..|.|+|+||....             +.+...|+...+.+|+++ +++....-.   ..+...+...+.+...|.|+||
T Consensus        57 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~vilv~-d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK  122 (206)
T 2bcg_Y           57 VKLQIWDTAGQERF-------------RTITSSYYRGSHGIIIVY-DVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK  122 (206)
T ss_dssp             EEEEEECCTTTTTT-------------TCCCGGGGTTCSEEEEEE-ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             EEEEEEeCCChHHH-------------HHHHHHhccCCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence            47999999994332             234667888888666655 444221111   1234444554556788999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       123 ~Dl  125 (206)
T 2bcg_Y          123 CDL  125 (206)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            996

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=90.57  E-value=0.34  Score=38.78  Aligned_cols=68  Identities=18%  Similarity=0.153  Sum_probs=41.6

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlT  146 (294)
                      ...|.|+|+||....             +.+...|+++.+.+|+++-..+.+ +.+.  ..+...+...+ +...|-|+|
T Consensus        55 ~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~n  120 (182)
T 3bwd_D           55 TVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGT  120 (182)
T ss_dssp             ---CEEECCCC-CTT-------------TTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEE
T ss_pred             EEEEEEEECCCChhh-------------hhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEe
Confidence            356889999995321             256678888888777665443321 1121  24455555555 577999999


Q ss_pred             cchhh
Q psy8958         147 KVSQQ  151 (294)
Q Consensus       147 K~D~~  151 (294)
                      |+|+.
T Consensus       121 K~Dl~  125 (182)
T 3bwd_D          121 KLDLR  125 (182)
T ss_dssp             CHHHH
T ss_pred             chhhh
Confidence            99964

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=90.46  E-value=0.17  Score=41.75  Aligned_cols=67  Identities=18%  Similarity=0.186  Sum_probs=42.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..|.|+|+||.....             .+...|+.+.+.+|+++-..+.+ +.+.  ..+...+...+ +...|-|+||
T Consensus        68 ~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK  133 (201)
T 2q3h_A           68 VRLQLCDTAGQDEFD-------------KLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQ  133 (201)
T ss_dssp             EEEEEEECCCSTTCS-------------SSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEEC
T ss_pred             EEEEEEECCCCHHHH-------------HHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence            468899999974322             34567888888776665443321 1111  23344555544 5788999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      +|+.
T Consensus       134 ~Dl~  137 (201)
T 2q3h_A          134 SDLR  137 (201)
T ss_dssp             GGGG
T ss_pred             Hhhh
Confidence            9964

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=90.45  E-value=0.28  Score=48.05  Aligned_cols=72  Identities=13%  Similarity=0.198  Sum_probs=34.7

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHH-HHHhhhhcCCCCceEEEeccCCCcchhc---HHHHhhhhcCCCCCeEEEEec
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLI-RQMTQTHMSNPNAIILCIQDGSVDAERS---NVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i-~~Lv~~Yi~~p~sIILaV~~a~~D~ans---~al~lar~~DP~G~RTIGVlT  146 (294)
                      ..++|+|+||+....      +..+.+ -.....|+...+.+|++ ++++......   ....+.+.+.  +...|.|+|
T Consensus       281 ~~l~liDT~G~~~~~------~~ve~~gi~~~~~~~~~aD~vl~V-vD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~N  351 (476)
T 3gee_A          281 TMFRLTDTAGLREAG------EEIEHEGIRRSRMKMAEADLILYL-LDLGTERLDDELTEIRELKAAHP--AAKFLTVAN  351 (476)
T ss_dssp             EEEEEEC--------------------------CCCSSCSEEEEE-EETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEE
T ss_pred             eEEEEEECCCCCcch------hHHHHHHHHHHHhhcccCCEEEEE-EECCCCcchhhhHHHHHHHHhcC--CCCEEEEEE
Confidence            469999999986421      111111 13356688888866555 4444322211   3344555554  578999999


Q ss_pred             cchhh
Q psy8958         147 KVSQQ  151 (294)
Q Consensus       147 K~D~~  151 (294)
                      |.|+.
T Consensus       352 K~Dl~  356 (476)
T 3gee_A          352 KLDRA  356 (476)
T ss_dssp             CTTSC
T ss_pred             CcCCC
Confidence            99964

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=90.44  E-value=0.23  Score=41.50  Aligned_cols=73  Identities=15%  Similarity=0.248  Sum_probs=43.0

Q ss_pred             EEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc-HHH-HhhhhcCCCC
Q psy8958          62 SMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS-NVT-DLVSQMDPQG  138 (294)
Q Consensus        62 ~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans-~al-~lar~~DP~G  138 (294)
                      .+.+.+   ..|.++|+||...             .+.+...|++..+.+|+++-..+.+ +.+. ..+ .+.+.....+
T Consensus        63 ~~~~~~---~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~  126 (198)
T 1f6b_A           63 ELTIAG---MTFTTFDLGGHIQ-------------ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIAN  126 (198)
T ss_dssp             EEEETT---EEEEEEEECC-----------------CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred             EEEECC---EEEEEEECCCcHh-------------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCC
Confidence            444444   6799999999432             2346778999888777665443322 2211 112 2222224456


Q ss_pred             CeEEEEeccchh
Q psy8958         139 KRTIFVLTKVSQ  150 (294)
Q Consensus       139 ~RTIGVlTK~D~  150 (294)
                      ...|.|.||+|+
T Consensus       127 ~piilv~NK~Dl  138 (198)
T 1f6b_A          127 VPILILGNKIDR  138 (198)
T ss_dssp             SCEEEEEECTTS
T ss_pred             CcEEEEEECCCc
Confidence            788999999995

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=90.42  E-value=0.21  Score=39.88  Aligned_cols=76  Identities=12%  Similarity=0.146  Sum_probs=42.2

Q ss_pred             EEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcC---CC
Q psy8958          63 MSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMD---PQ  137 (294)
Q Consensus        63 leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~D---P~  137 (294)
                      +.+.+.....+.|+|+||....             ..+...|+++.+.+|+++-..+.+ +.+ ...+...+.+.   +.
T Consensus        48 ~~~~~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~  114 (178)
T 2hxs_A           48 ITLPGNLNVTLQIWDIGGQTIG-------------GKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET  114 (178)
T ss_dssp             EEETTTEEEEEEEEECTTCCTT-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred             EEeCCCCEEEEEEEECCCCccc-------------cchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCC
Confidence            3333322467999999994321             235667888888777755443321 111 12223333322   12


Q ss_pred             CCeEEEEeccchhh
Q psy8958         138 GKRTIFVLTKVSQQ  151 (294)
Q Consensus       138 G~RTIGVlTK~D~~  151 (294)
                      ....|-|.||.|+.
T Consensus       115 ~~~iilv~nK~Dl~  128 (178)
T 2hxs_A          115 QPLVALVGNKIDLE  128 (178)
T ss_dssp             CCEEEEEEECGGGG
T ss_pred             CCeEEEEEEccccc
Confidence            33468899999963

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=90.38  E-value=0.52  Score=44.53  Aligned_cols=65  Identities=18%  Similarity=0.227  Sum_probs=40.9

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC---cchhcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV---DAERSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~---D~ans~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..++|+|+||..            +.+ ..+..++...+.+||+| +|+.   ...+.+.+.+++.+..  ...|.|+||
T Consensus        83 ~~i~iiDtPGh~------------~f~-~~~~~~~~~~D~~ilVv-da~~g~~~~qt~e~l~~~~~~~~--~~iivviNK  146 (410)
T 1kk1_A           83 RRVSFIDAPGHE------------ALM-TTMLAGASLMDGAILVI-AANEPCPRPQTREHLMALQIIGQ--KNIIIAQNK  146 (410)
T ss_dssp             EEEEEEECSSHH------------HHH-HHHHHCGGGCSEEEEEE-ETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEEC
T ss_pred             cEEEEEECCChH------------HHH-HHHHhhhhhCCEEEEEE-ECCCCCCChhHHHHHHHHHHcCC--CcEEEEEEC
Confidence            469999999931            222 34455666777665555 5553   2345556666666532  357899999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      +|+.
T Consensus       147 ~Dl~  150 (410)
T 1kk1_A          147 IELV  150 (410)
T ss_dssp             GGGS
T ss_pred             ccCC
Confidence            9964

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=90.37  E-value=0.48  Score=47.81  Aligned_cols=81  Identities=17%  Similarity=0.250  Sum_probs=48.8

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC--------cchhcH
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV--------DAERSN  126 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~--------D~ans~  126 (294)
                      +++-+.....+..++ ..++|+|+||...             ...++..|++..+.+||+|-..+-        ...+..
T Consensus       230 GiTid~~~~~~~~~~-~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e  295 (611)
T 3izq_1          230 GVTVSICTSHFSTHR-ANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE  295 (611)
T ss_dssp             TTCCSCSCCEEECSS-CEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHH
T ss_pred             CeeEeeeeEEEecCC-ceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHH
Confidence            344444455555544 4799999999632             234556788888866665544331        123344


Q ss_pred             HHHhhhhcCCCCCeEEEEeccchhh
Q psy8958         127 VTDLVSQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       127 al~lar~~DP~G~RTIGVlTK~D~~  151 (294)
                      .+.+++...  -...|.|+||+|+.
T Consensus       296 ~l~~~~~lg--i~~iIVVvNKiDl~  318 (611)
T 3izq_1          296 HMLLASSLG--IHNLIIAMNKMDNV  318 (611)
T ss_dssp             HHHHHHTTT--CCEEEEEEECTTTT
T ss_pred             HHHHHHHcC--CCeEEEEEeccccc
Confidence            445555442  13488999999964

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=90.37  E-value=0.19  Score=42.11  Aligned_cols=67  Identities=16%  Similarity=0.163  Sum_probs=42.9

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..|.|+|+||.-.             ...+...|++..+.+|+++-..+.+ +.+.  ..+...+... .+.-.|.|+||
T Consensus        78 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK  143 (204)
T 4gzl_A           78 VNLGLWDTAGLED-------------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTK  143 (204)
T ss_dssp             EEEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEEC
T ss_pred             EEEEEEECCCchh-------------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEec
Confidence            4577999999632             2356778899888777766443321 1111  2344455544 35778999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      +|+.
T Consensus       144 ~Dl~  147 (204)
T 4gzl_A          144 LDLR  147 (204)
T ss_dssp             HHHH
T ss_pred             hhhc
Confidence            9964

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=90.13  E-value=0.16  Score=41.68  Aligned_cols=67  Identities=6%  Similarity=0.117  Sum_probs=41.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHH-HhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVT-DLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al-~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||...             ...+...|+...+.+|+++-..+.+ +.+ ...+ .+.+.....+...|.|+||
T Consensus        62 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK  128 (206)
T 2bov_A           62 VQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK  128 (206)
T ss_dssp             EEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEEC
T ss_pred             EEEEEEcCCChhh-------------hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEec
Confidence            4799999999432             1346677888888777665443321 111 1122 2333344456789999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       129 ~Dl  131 (206)
T 2bov_A          129 SDL  131 (206)
T ss_dssp             TTC
T ss_pred             cCc
Confidence            995

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=90.02  E-value=0.49  Score=46.10  Aligned_cols=90  Identities=8%  Similarity=0.084  Sum_probs=55.6

Q ss_pred             ceEEEEeCCCC-CCceEEeCCCCcccCCCC-CC----hhHHHHHHHHhhhhcCCC-----------CceEEEeccCCCcc
Q psy8958          60 VISMSVKGPGL-QRMVLVDLPGIISTSTQD-MA----SDTRDLIRQMTQTHMSNP-----------NAIILCIQDGSVDA  122 (294)
Q Consensus        60 ~I~leI~gP~~-p~LTLVDLPGi~~~~~~~-q~----~~~~~~i~~Lv~~Yi~~p-----------~sIILaV~~a~~D~  122 (294)
                      .+.+....+.+ ++||++|.||+....... .-    ..+..++..++..|+...           +++++.|+|++..+
T Consensus        83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l  162 (427)
T 2qag_B           83 SNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL  162 (427)
T ss_dssp             EEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---
T ss_pred             eEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC
Confidence            35555555554 589999999987543211 01    124556666667664322           23688889988766


Q ss_pred             hhcHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958         123 ERSNVTDLVSQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       123 ans~al~lar~~DP~G~RTIGVlTK~D~~  151 (294)
                      ...+ ..+++.+. .+...|-|++|.|..
T Consensus       163 ~~~D-ieilk~L~-~~~~vI~Vi~KtD~L  189 (427)
T 2qag_B          163 KSLD-LVTMKKLD-SKVNIIPIIAKADAI  189 (427)
T ss_dssp             CHHH-HHHHHHTC-SCSEEEEEESCGGGS
T ss_pred             CHHH-HHHHHHHh-hCCCEEEEEcchhcc
Confidence            6555 57788887 679999999999964

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=89.97  E-value=0.47  Score=47.10  Aligned_cols=76  Identities=13%  Similarity=0.242  Sum_probs=47.6

Q ss_pred             ccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchhcHHHHhhhhc
Q psy8958          56 VSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAERSNVTDLVSQM  134 (294)
Q Consensus        56 ~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~ans~al~lar~~  134 (294)
                      +....+.+...   -..++|+|+||.....             ..+..|++...++|++|-+.+- ...+...++.++. 
T Consensus        70 i~~~~~~~~~~---~~~i~liDTPG~~df~-------------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~-  132 (528)
T 3tr5_A           70 VTTSVMQFPYK---DYLINLLDTPGHADFT-------------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL-  132 (528)
T ss_dssp             SSSSEEEEEET---TEEEEEECCCCSTTCC-------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT-
T ss_pred             EEEeEEEEEeC---CEEEEEEECCCchhHH-------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-
Confidence            34444444443   2469999999964322             3467788888877665544432 3334444555554 


Q ss_pred             CCCCCeEEEEeccchh
Q psy8958         135 DPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       135 DP~G~RTIGVlTK~D~  150 (294)
                        .+.-.|.|+||+|+
T Consensus       133 --~~iPiivviNK~Dl  146 (528)
T 3tr5_A          133 --RHTPIMTFINKMDR  146 (528)
T ss_dssp             --TTCCEEEEEECTTS
T ss_pred             --cCCCEEEEEeCCCC
Confidence              45779999999996

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=89.94  E-value=0.095  Score=43.99  Aligned_cols=67  Identities=9%  Similarity=0.031  Sum_probs=42.5

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||.....             .+...|+...+.+|+++-..+.+.  .-...+...+..-+.+...|.|+||+
T Consensus        61 ~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~  127 (218)
T 4djt_A           61 IKFNVWDTAGQEKKA-------------VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKI  127 (218)
T ss_dssp             EEEEEEEECSGGGTS-------------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECT
T ss_pred             EEEEEEecCCchhhc-------------hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence            569999999954322             345567778887766654433211  11123355555556668899999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       128 Dl  129 (218)
T 4djt_A          128 DI  129 (218)
T ss_dssp             TC
T ss_pred             CC
Confidence            95

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=89.90  E-value=0.64  Score=37.49  Aligned_cols=67  Identities=9%  Similarity=0.169  Sum_probs=40.7

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-hhcHHH----Hhhhhc--CCCCCeEEE
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-ERSNVT----DLVSQM--DPQGKRTIF  143 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-ans~al----~lar~~--DP~G~RTIG  143 (294)
                      ..|.|+|+||...             .+.+...|+++.+.+|+++-...... .+...+    +...++  ...+.-.|-
T Consensus        74 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piil  140 (198)
T 3t1o_A           74 TRFHLYTVPGQVF-------------YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVI  140 (198)
T ss_dssp             EEEEEEECCSCCS-------------CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEE
T ss_pred             eEEEEEeCCChHH-------------HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEE
Confidence            3589999999542             12466678998887776554431100 012222    233333  345678999


Q ss_pred             Eeccchh
Q psy8958         144 VLTKVSQ  150 (294)
Q Consensus       144 VlTK~D~  150 (294)
                      |.||.|+
T Consensus       141 v~NK~Dl  147 (198)
T 3t1o_A          141 QVNKRDL  147 (198)
T ss_dssp             EEECTTS
T ss_pred             EEEchhc
Confidence            9999995

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=89.85  E-value=0.47  Score=38.05  Aligned_cols=69  Identities=20%  Similarity=0.383  Sum_probs=40.7

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcC--CCCceEEEeccCCCcch-hcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMS--NPNAIILCIQDGSVDAE-RSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~--~p~sIILaV~~a~~D~a-ns~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..|.++|+||.......  .     .-+.+...|+.  .+..+ +.|.++.. .. ....+...++   .+.-.|.|.+|
T Consensus        50 ~~l~i~Dt~G~~~~~~~--~-----~~~~~~~~~~~~~~~~~~-i~v~D~~~-~~~~~~~~~~~~~---~~~p~ilv~nK  117 (165)
T 2wji_A           50 EKFKVVDLPGVYSLTAN--S-----IDEIIARDYIINEKPDLV-VNIVDATA-LERNLYLTLQLME---MGANLLLALNK  117 (165)
T ss_dssp             EEEEEEECCCCSCSSSS--S-----HHHHHHHHHHHHHCCSEE-EEEEETTC-HHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred             cEEEEEECCCcccCCCc--c-----hhHHHHHHHHhcCCCCEE-EEEecCCc-hhHhHHHHHHHHh---cCCCEEEEEEc
Confidence            46999999998764321  1     22355666765  56644 55666553 22 1122223333   35678999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      +|+.
T Consensus       118 ~Dl~  121 (165)
T 2wji_A          118 MDLA  121 (165)
T ss_dssp             HHHH
T ss_pred             hHhc
Confidence            9964

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=89.83  E-value=0.38  Score=45.50  Aligned_cols=66  Identities=17%  Similarity=0.212  Sum_probs=41.2

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC--cchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV--DAERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~--D~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..++|+|+||..             .....+..|+...+.+||+|-..+-  ...+.+.+.+++....  ...|.|+||.
T Consensus        75 ~~~~iiDtPGh~-------------~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK~  139 (403)
T 3sjy_A           75 RRISFIDAPGHE-------------VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNKV  139 (403)
T ss_dssp             EEEEEEECCCCG-------------GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEECG
T ss_pred             ceEEEEECCCcH-------------HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEECc
Confidence            468999999931             1223455677778866666544432  2234455666666532  3579999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       140 Dl~  142 (403)
T 3sjy_A          140 DVV  142 (403)
T ss_dssp             GGS
T ss_pred             ccc
Confidence            964

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=89.81  E-value=0.28  Score=38.58  Aligned_cols=68  Identities=16%  Similarity=0.211  Sum_probs=39.8

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcC--CCCCeEEEEec
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMD--PQGKRTIFVLT  146 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~D--P~G~RTIGVlT  146 (294)
                      ..+.|+|+||...             ...+...|+...+.+|+++-..+.+ +.. ...+...+++.  ..+...+.|+|
T Consensus        51 ~~~~~~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~n  117 (172)
T 2erx_A           51 CTLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN  117 (172)
T ss_dssp             EEEEEEECCSCSS-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEE
T ss_pred             EEEEEEECCCchh-------------hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEE
Confidence            4689999999532             1245667777778776666544322 111 12223333332  23567899999


Q ss_pred             cchhh
Q psy8958         147 KVSQQ  151 (294)
Q Consensus       147 K~D~~  151 (294)
                      |.|+.
T Consensus       118 K~Dl~  122 (172)
T 2erx_A          118 KCDES  122 (172)
T ss_dssp             CGGGG
T ss_pred             ccccc
Confidence            99963

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=89.73  E-value=0.12  Score=49.43  Aligned_cols=76  Identities=14%  Similarity=0.280  Sum_probs=43.2

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~  151 (294)
                      .++|+|+||+.+.....+.-+-...++  ...|++..+.+ |.|++++.....++ .+++..+...|.-.|-|++|+|+.
T Consensus       224 ~~~l~DT~G~~~~~~~~~~~e~~~~~~--~~~~~~~ad~~-llv~D~~~~~s~~~-~~~~~~~~~~~~~iiiv~NK~Dl~  299 (436)
T 2hjg_A          224 EFVIVDTAGMRKKGKVYETTEKYSVLR--ALKAIDRSEVV-AVVLDGEEGIIEQD-KRIAGYAHEAGKAVVIVVNKWDAV  299 (436)
T ss_dssp             EEEETTHHHHTCBTTBCCCCSHHHHHH--HHHHHHHCSEE-EEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGS
T ss_pred             EEEEEECCCcCcCccccchHHHHHHHH--HHHHHHhCCEE-EEEEcCCcCCcHHH-HHHHHHHHHcCCcEEEEEECccCC
Confidence            489999999876543221111111111  22466777754 45556654443333 234444334578899999999963

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=89.71  E-value=1.3  Score=41.66  Aligned_cols=73  Identities=14%  Similarity=0.145  Sum_probs=45.2

Q ss_pred             EEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhcHHHHhhhhcCCCCCe
Q psy8958          62 SMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERSNVTDLVSQMDPQGKR  140 (294)
Q Consensus        62 ~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans~al~lar~~DP~G~R  140 (294)
                      .+.+... -..++|+|+||...             ...++..|++..+.+||+|-..+-. ..+.+.+.+++..   |..
T Consensus        58 ~~~~~~~-~~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~---~vp  120 (397)
T 1d2e_A           58 HVEYSTA-ARHYAHTDCPGHAD-------------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI---GVE  120 (397)
T ss_dssp             EEEEECS-SCEEEEEECSSHHH-------------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT---TCC
T ss_pred             eEEeccC-CeEEEEEECCChHH-------------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc---CCC
Confidence            3444443 35799999999532             2335567788888776666443322 2234455666654   455


Q ss_pred             -EEEEeccchhh
Q psy8958         141 -TIFVLTKVSQQ  151 (294)
Q Consensus       141 -TIGVlTK~D~~  151 (294)
                       -|.|+||+|+.
T Consensus       121 ~iivviNK~Dl~  132 (397)
T 1d2e_A          121 HVVVYVNKADAV  132 (397)
T ss_dssp             CEEEEEECGGGC
T ss_pred             eEEEEEECcccC
Confidence             47999999964

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=89.70  E-value=0.24  Score=41.44  Aligned_cols=67  Identities=19%  Similarity=0.276  Sum_probs=42.8

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||....             ..+...|+++.+.+|+++-..+.+ +.+  ...+...+..-+ +...|.|+||
T Consensus        73 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK  138 (207)
T 2fv8_A           73 VELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANK  138 (207)
T ss_dssp             EEEEEEECTTCTTC-------------TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEEC
T ss_pred             EEEEEEECCCcHHH-------------HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEc
Confidence            46899999995432             245667888888777765443321 222  223445555444 4778999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      .|+.
T Consensus       139 ~Dl~  142 (207)
T 2fv8_A          139 KDLR  142 (207)
T ss_dssp             GGGG
T ss_pred             hhhh
Confidence            9963

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=89.67  E-value=0.15  Score=41.39  Aligned_cols=67  Identities=13%  Similarity=0.154  Sum_probs=39.7

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcH---HHHhhhhc-CCCCCeEEEEe
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSN---VTDLVSQM-DPQGKRTIFVL  145 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~---al~lar~~-DP~G~RTIGVl  145 (294)
                      ...+.|+|+||....             +.+...|+++.+.+|+++ +++....-..   .+.....+ ...+...|-|+
T Consensus        63 ~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~-d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~  128 (195)
T 1x3s_A           63 KAKLAIWDTAGQERF-------------RTLTPSYYRGAQGVILVY-DVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG  128 (195)
T ss_dssp             EEEEEEEEECSSGGG-------------CCSHHHHHTTCCEEEEEE-ETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEE
T ss_pred             EEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEE
Confidence            357999999995432             234567888888666655 4443211111   22233332 23456789999


Q ss_pred             ccchh
Q psy8958         146 TKVSQ  150 (294)
Q Consensus       146 TK~D~  150 (294)
                      ||+|+
T Consensus       129 nK~Dl  133 (195)
T 1x3s_A          129 NKIDK  133 (195)
T ss_dssp             ECTTS
T ss_pred             ECCcC
Confidence            99995

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=89.51  E-value=0.78  Score=37.83  Aligned_cols=84  Identities=15%  Similarity=0.161  Sum_probs=51.5

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHh---hhhcCCCCceEEEeccCCCcch--hcHHH
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMT---QTHMSNPNAIILCIQDGSVDAE--RSNVT  128 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv---~~Yi~~p~sIILaV~~a~~D~a--ns~al  128 (294)
                      ..++...+...+.+.....|.|+|+||.....             .+.   ..|++..+.+|+++- ++..+.  -....
T Consensus        52 ~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------~~~~~~~~~~~~~~~~i~v~d-~~~~~~~~~~~~~  117 (196)
T 3llu_A           52 LESTNKIYKDDISNSSFVNFQIWDFPGQMDFF-------------DPTFDYEMIFRGTGALIYVID-AQDDYMEALTRLH  117 (196)
T ss_dssp             CCCCCSCEEEEECCTTSCCEEEEECCSSCCTT-------------CTTCCHHHHHHTCSEEEEEEE-TTSCCHHHHHHHH
T ss_pred             eccccceeeeeccCCCeeEEEEEECCCCHHHH-------------hhhhhcccccccCCEEEEEEE-CCCchHHHHHHHH
Confidence            44556677777776677899999999954321             223   577788887766554 443211  12222


Q ss_pred             Hhhhhc--CCCCCeEEEEeccchhh
Q psy8958         129 DLVSQM--DPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       129 ~lar~~--DP~G~RTIGVlTK~D~~  151 (294)
                      +..+++  ...+.-.|-|.||.|+.
T Consensus       118 ~~l~~~~~~~~~~piilv~nK~Dl~  142 (196)
T 3llu_A          118 ITVSKAYKVNPDMNFEVFIHKVDGL  142 (196)
T ss_dssp             HHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred             HHHHHHHhcCCCCcEEEEEeccccC
Confidence            333332  23367899999999963

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=89.39  E-value=0.18  Score=42.75  Aligned_cols=67  Identities=10%  Similarity=0.031  Sum_probs=40.8

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc---HHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS---NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans---~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||....             +.+...|++..+.+|+++ +++....-.   ..+..++...+.+.-.|-|+||
T Consensus        62 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vilV~-D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK  127 (223)
T 3cpj_B           62 IKAQIWDTAGQERY-------------RAITSAYYRGAVGALIVY-DISKSSSYENCNHWLSELRENADDNVAVGLIGNK  127 (223)
T ss_dssp             EEEEEECCTTTTTT-------------TCCCGGGTTTCCEEEEEE-C-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECC
T ss_pred             EEEEEEECCCccch-------------hhhHHHHhccCCEEEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence            47999999994322             245678888888766654 444321111   2234455554556778999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      .|+.
T Consensus       128 ~Dl~  131 (223)
T 3cpj_B          128 SDLA  131 (223)
T ss_dssp             GGGG
T ss_pred             cccc
Confidence            9963

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=89.37  E-value=0.56  Score=45.34  Aligned_cols=71  Identities=23%  Similarity=0.331  Sum_probs=44.1

Q ss_pred             EEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc---------hhcHHHHhhhh
Q psy8958          63 MSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA---------ERSNVTDLVSQ  133 (294)
Q Consensus        63 leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~---------ans~al~lar~  133 (294)
                      ..+..++. .++|+|+||..            + ....+..|+...+.+||+| +|+...         .+.+.+.+++.
T Consensus        78 ~~~~~~~~-~~~iiDtPGh~------------~-f~~~~~~~~~~aD~~ilVv-da~~g~~~~sf~~~~qt~~~~~~~~~  142 (458)
T 1f60_A           78 WKFETPKY-QVTVIDAPGHR------------D-FIKNMITGTSQADCAILII-AGGVGEFEAGISKDGQTREHALLAFT  142 (458)
T ss_dssp             EEEECSSE-EEEEEECCCCT------------T-HHHHHHHSSSCCSEEEEEE-ECSHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred             EEEecCCc-eEEEEECCCcH------------H-HHHHHHhhhhhCCEEEEEE-eCCcCccccccCcchhHHHHHHHHHH
Confidence            34555543 69999999942            1 2234566788888666655 444321         23344556665


Q ss_pred             cCCCCC-eEEEEeccchhh
Q psy8958         134 MDPQGK-RTIFVLTKVSQQ  151 (294)
Q Consensus       134 ~DP~G~-RTIGVlTK~D~~  151 (294)
                      .   |. ..|.|+||+|+.
T Consensus       143 ~---~v~~iivviNK~Dl~  158 (458)
T 1f60_A          143 L---GVRQLIVAVNKMDSV  158 (458)
T ss_dssp             T---TCCEEEEEEECGGGG
T ss_pred             c---CCCeEEEEEEccccc
Confidence            4   44 478899999974

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=89.35  E-value=0.12  Score=43.10  Aligned_cols=67  Identities=19%  Similarity=0.253  Sum_probs=42.8

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchh--cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAER--SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~an--s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||...             .+.+...|+++.+.+|+++-..+. .+.+  ...++.+++..+ +...|-|+||
T Consensus        73 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK  138 (201)
T 2gco_A           73 VELALWDTAGQED-------------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNK  138 (201)
T ss_dssp             EEEEEECCCCSGG-------------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEEC
T ss_pred             EEEEEEECCCchh-------------HHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEec
Confidence            4789999999432             134566788888877766543332 1222  233455555544 5778999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      +|+.
T Consensus       139 ~Dl~  142 (201)
T 2gco_A          139 KDLR  142 (201)
T ss_dssp             GGGT
T ss_pred             HHhh
Confidence            9963

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=89.27  E-value=0.47  Score=39.21  Aligned_cols=67  Identities=13%  Similarity=0.264  Sum_probs=41.6

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhcH--HHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERSN--VTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans~--al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.++|+||....             +.+...|+++.+.+|+++-..+.+ +.+..  ...+.+.....+...|-|.||
T Consensus        67 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK  133 (190)
T 1m2o_B           67 IKFTTFDLGGHIQA-------------RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNK  133 (190)
T ss_dssp             EEEEEEECCCSGGG-------------TTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEEC
T ss_pred             EEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEEC
Confidence            67999999996532             235678888888777665443322 11111  112222233456778999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      +|+
T Consensus       134 ~Dl  136 (190)
T 1m2o_B          134 IDA  136 (190)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            995

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=89.20  E-value=0.3  Score=40.47  Aligned_cols=69  Identities=14%  Similarity=0.082  Sum_probs=39.7

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHH---HH-hhhhcCCCCCeEEEE
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNV---TD-LVSQMDPQGKRTIFV  144 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~a---l~-lar~~DP~G~RTIGV  144 (294)
                      ....+.|+|+||.....             .+...|+...+.+|+++-..+.+ .-..+   +. +.+.....+...|-|
T Consensus        70 ~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv  135 (201)
T 3oes_A           70 DEFHLHLVDTAGQDEYS-------------ILPYSFIIGVHGYVLVYSVTSLH-SFQVIESLYQKLHEGHGKTRVPVVLV  135 (201)
T ss_dssp             -CEEEEEEEECCCCTTC-------------CCCGGGTTTCCEEEEEEETTCHH-HHHHHHHHHHHHHC-----CCCEEEE
T ss_pred             EEEEEEEEECCCccchH-------------HHHHHHHhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            34568999999944322             34678888888777666544321 11111   12 222333446779999


Q ss_pred             eccchhh
Q psy8958         145 LTKVSQQ  151 (294)
Q Consensus       145 lTK~D~~  151 (294)
                      +||+|+.
T Consensus       136 ~nK~Dl~  142 (201)
T 3oes_A          136 GNKADLS  142 (201)
T ss_dssp             EECTTCG
T ss_pred             EECccCc
Confidence            9999953

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=89.12  E-value=0.32  Score=38.20  Aligned_cols=68  Identities=10%  Similarity=0.048  Sum_probs=39.7

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      -..+.|+|+||...             .+.+...|+++.+.+|+++-..+.+ +.. ...+.........+.-.|-|.||
T Consensus        54 ~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK  120 (170)
T 1r2q_A           54 TVKFEIWDTAGQER-------------YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK  120 (170)
T ss_dssp             EEEEEEEEECCSGG-------------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             EEEEEEEeCCCcHH-------------hhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence            34689999999432             2345677888888776665443321 111 11223333333334556777799


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       121 ~Dl  123 (170)
T 1r2q_A          121 ADL  123 (170)
T ss_dssp             GGG
T ss_pred             ccC
Confidence            996

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=88.85  E-value=1  Score=42.45  Aligned_cols=77  Identities=19%  Similarity=0.302  Sum_probs=48.0

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhhh
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLVS  132 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~lar  132 (294)
                      +++-+.-...+..++. .++|+|+||..+            .+.+|+ .+++..+.+||+|-  +..+.  +.+.+.+++
T Consensus        45 giTi~~~~~~~~~~~~-~i~iiDtPGh~~------------f~~~~~-~~~~~aD~ailVvd--~~g~~~qt~e~~~~~~  108 (370)
T 2elf_A           45 GTSSDITMYNNDKEGR-NMVFVDAHSYPK------------TLKSLI-TALNISDIAVLCIP--PQGLDAHTGECIIALD  108 (370)
T ss_dssp             EEESSSEEEEECSSSS-EEEEEECTTTTT------------CHHHHH-HHHHTCSEEEEEEC--TTCCCHHHHHHHHHHH
T ss_pred             CEEEEeeEEEEecCCe-EEEEEECCChHH------------HHHHHH-HHHHHCCEEEEEEc--CCCCcHHHHHHHHHHH
Confidence            4444555555555554 599999999642            123333 45577787777665  43333  445566666


Q ss_pred             hcCCCCCeE-EEEec-cchh
Q psy8958         133 QMDPQGKRT-IFVLT-KVSQ  150 (294)
Q Consensus       133 ~~DP~G~RT-IGVlT-K~D~  150 (294)
                      ..   |... |.|++ |+|+
T Consensus       109 ~~---~i~~~ivvvNNK~Dl  125 (370)
T 2elf_A          109 LL---GFKHGIIALTRSDST  125 (370)
T ss_dssp             HT---TCCEEEEEECCGGGS
T ss_pred             Hc---CCCeEEEEEEeccCC
Confidence            65   4455 99999 9995

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=88.76  E-value=0.45  Score=37.48  Aligned_cols=68  Identities=15%  Similarity=0.085  Sum_probs=31.1

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHH-HhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVT-DLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al-~lar~~DP~G~RTIGVlT  146 (294)
                      ...|.++|+||...             .+.+...|++..+.+|+++...+.+ +.+ ...+ .+.+.....+.-.|.|.|
T Consensus        48 ~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n  114 (166)
T 3q72_A           48 EASLMVYDIWEQDG-------------GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGN  114 (166)
T ss_dssp             EEEEEEEECC----------------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEE
T ss_pred             EEEEEEEECCCCcc-------------chhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence            45688999999432             2456778888888887766554322 111 1112 233333345677899999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       115 K~Dl  118 (166)
T 3q72_A          115 KSDL  118 (166)
T ss_dssp             CTTC
T ss_pred             cccc
Confidence            9995

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=88.63  E-value=0.57  Score=38.28  Aligned_cols=68  Identities=16%  Similarity=0.211  Sum_probs=42.4

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlT  146 (294)
                      -..+.++|+||...             .+.+...|++..+.+|+++-..+.+ +...  ....+.+.....+.-.|.|.|
T Consensus        59 ~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N  125 (181)
T 1fzq_A           59 GFKLNVWDIGGQRK-------------IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN  125 (181)
T ss_dssp             TEEEEEEECSSCGG-------------GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEE
T ss_pred             CEEEEEEECCCCHH-------------HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence            35799999999432             2456778999988777765443321 2211  112233333445677899999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |+|+
T Consensus       126 K~Dl  129 (181)
T 1fzq_A          126 KQDL  129 (181)
T ss_dssp             CTTS
T ss_pred             CcCc
Confidence            9995

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=88.59  E-value=0.44  Score=48.05  Aligned_cols=63  Identities=11%  Similarity=0.193  Sum_probs=42.2

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      +.++|+|+||.....             .++..|++..+.+||+ ++|+..  ..+-+++++++..   +.-.|.|+||+
T Consensus        70 ~~i~liDTPGhe~F~-------------~~~~r~~~~aD~aILV-vDa~~Gv~~qT~e~l~~l~~~---~vPiIVViNKi  132 (594)
T 1g7s_A           70 PGLFFIDTPGHEAFT-------------TLRKRGGALADLAILI-VDINEGFKPQTQEALNILRMY---RTPFVVAANKI  132 (594)
T ss_dssp             CEEEEECCCTTSCCT-------------TSBCSSSBSCSEEEEE-EETTTCCCHHHHHHHHHHHHT---TCCEEEEEECG
T ss_pred             CCEEEEECCCcHHHH-------------HHHHHHHhhCCEEEEE-EECCCCccHhHHHHHHHHHHc---CCeEEEEeccc
Confidence            459999999964432             2445677777755555 455532  3455666777664   45689999999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       133 Dl  134 (594)
T 1g7s_A          133 DR  134 (594)
T ss_dssp             GG
T ss_pred             cc
Confidence            96

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=88.45  E-value=0.15  Score=41.30  Aligned_cols=68  Identities=15%  Similarity=0.143  Sum_probs=40.6

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHH-HhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVT-DLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al-~lar~~DP~G~RTIGVlT  146 (294)
                      ...|.|+|+||....             ..+...|+++.+.+|+++-..+.+ +.+ ...+ .+.+.....+...|.|+|
T Consensus        65 ~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n  131 (183)
T 3kkq_A           65 WAILDVLDTAGQEEF-------------SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN  131 (183)
T ss_dssp             EEEEEEEECCSCGGG-------------CSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred             EEEEEEEECCCchhh-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence            345888999994321             234567777788777665444321 111 1112 233334556678999999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       132 K~Dl  135 (183)
T 3kkq_A          132 KVDL  135 (183)
T ss_dssp             CTTC
T ss_pred             CCCc
Confidence            9995

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=88.35  E-value=1  Score=42.51  Aligned_cols=65  Identities=18%  Similarity=0.237  Sum_probs=40.2

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC---cchhcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV---DAERSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~---D~ans~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..++|+|+||.             +.....+..++...+.+||+| +|+.   ...+.+.+.+++....  ...|.|+||
T Consensus        81 ~~i~iiDtPGh-------------~~f~~~~~~~~~~~D~~ilVv-da~~g~~~~qt~e~l~~~~~l~~--~~iivv~NK  144 (408)
T 1s0u_A           81 RRVSFVDSPGH-------------ETLMATMLSGASLMDGAILVI-AANEPCPQPQTKEHLMALEILGI--DKIIIVQNK  144 (408)
T ss_dssp             EEEEEEECSSH-------------HHHHHHHHTTCSCCSEEEEEE-ETTSCSSCHHHHHHHHHHHHTTC--CCEEEEEEC
T ss_pred             cEEEEEECCCH-------------HHHHHHHHHhHhhCCEEEEEE-ECCCCCCCchhHHHHHHHHHcCC--CeEEEEEEc
Confidence            46999999993             112234456677777665554 5553   2334455556655431  347899999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      +|+.
T Consensus       145 ~Dl~  148 (408)
T 1s0u_A          145 IDLV  148 (408)
T ss_dssp             TTSS
T ss_pred             cCCC
Confidence            9963

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=88.31  E-value=0.32  Score=39.89  Aligned_cols=67  Identities=13%  Similarity=0.174  Sum_probs=42.3

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlT  146 (294)
                      ...+.|+|+||.-.             ...+...|+.+.+.+|+++-..+.+ +.+  ...+...+...+ +...|-|.|
T Consensus        70 ~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~n  135 (194)
T 3reg_A           70 EFILHLWDTAGQEE-------------YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGL  135 (194)
T ss_dssp             EEEEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEE
T ss_pred             EEEEEEEECCCcHH-------------HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEE
Confidence            34589999999332             2356778999888777665443321 111  223344454433 477899999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |+|+
T Consensus       136 K~Dl  139 (194)
T 3reg_A          136 KVDL  139 (194)
T ss_dssp             CGGG
T ss_pred             Chhh
Confidence            9996

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=88.22  E-value=0.41  Score=40.36  Aligned_cols=67  Identities=13%  Similarity=0.121  Sum_probs=32.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..|.|+|+||..             ..+.+...|+...+.+|+++-..+.+ +.+.  ..+...+...+ +...|-|+||
T Consensus        82 ~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK  147 (214)
T 2j1l_A           82 VHLHIWDTAGQD-------------DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCK  147 (214)
T ss_dssp             EEEEEEEC----------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEEC
T ss_pred             EEEEEEECCCch-------------hhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence            368999999932             22456677888888776655433321 1111  23444555544 4678999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      +|+.
T Consensus       148 ~Dl~  151 (214)
T 2j1l_A          148 TDLR  151 (214)
T ss_dssp             GGGG
T ss_pred             hhhh
Confidence            9963

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=88.16  E-value=0.51  Score=37.88  Aligned_cols=67  Identities=22%  Similarity=0.114  Sum_probs=39.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||.....             .+...|++..+.+|+++-..+.+ +..  .-...+.+.....+.-.|.|+||
T Consensus        54 ~~~~l~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK  120 (181)
T 3t5g_A           54 YHLQLVDTAGQDEYS-------------IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNK  120 (181)
T ss_dssp             EEEEEEECCCCCTTC-------------CCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEEC
T ss_pred             EEEEEEeCCCchhhh-------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            468999999965432             35567888888777765444321 111  11113344445556779999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       121 ~Dl  123 (181)
T 3t5g_A          121 KDL  123 (181)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            995

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=88.01  E-value=0.81  Score=37.16  Aligned_cols=72  Identities=19%  Similarity=0.272  Sum_probs=38.2

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc-HH---H-Hhhhhc---CCCCCeE
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS-NV---T-DLVSQM---DPQGKRT  141 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans-~a---l-~lar~~---DP~G~RT  141 (294)
                      ...+.|+|+||......     .    .......++...+++|++ ++++.+.... .+   + .+....   .+.+.-.
T Consensus        90 ~~~~~l~Dt~G~~~~~~-----~----~~~~~~~~~~~~~~~i~v-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  159 (193)
T 2ged_A           90 GSGVTLVDFPGHVKLRY-----K----LSDYLKTRAKFVKGLIFM-VDSTVDPKKLTTTAEFLVDILSITESSCENGIDI  159 (193)
T ss_dssp             CTTCSEEEETTCCBSSC-----C----HHHHHHHHGGGEEEEEEE-EETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCE
T ss_pred             CCeEEEEECCCCchHHH-----H----HHHHHHhhcccCCEEEEE-EECCCCchhHHHHHHHHHHHHhhhhhccccCCCE
Confidence            46799999999865331     1    122233334445655554 4544222211 11   1 122211   3346779


Q ss_pred             EEEeccchhh
Q psy8958         142 IFVLTKVSQQ  151 (294)
Q Consensus       142 IGVlTK~D~~  151 (294)
                      |.|+||+|+.
T Consensus       160 ilv~nK~Dl~  169 (193)
T 2ged_A          160 LIACNKSELF  169 (193)
T ss_dssp             EEEEECTTST
T ss_pred             EEEEEchHhc
Confidence            9999999953

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=87.98  E-value=0.14  Score=42.26  Aligned_cols=66  Identities=15%  Similarity=0.160  Sum_probs=38.9

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcH---HHH----hhhhcCCCCCeEEE
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSN---VTD----LVSQMDPQGKRTIF  143 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~---al~----lar~~DP~G~RTIG  143 (294)
                      ..++|+|+||....             +.+...|++..+.+|+++ +++....-..   .+.    .+...++.+...|.
T Consensus        57 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piil  122 (207)
T 1vg8_A           57 VTMQIWDTAGQERF-------------QSLGVAFYRGADCCVLVF-DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV  122 (207)
T ss_dssp             EEEEEEEECSSGGG-------------SCSCCGGGTTCSEEEEEE-ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEE
T ss_pred             EEEEEEeCCCcHHH-------------HHhHHHHHhCCcEEEEEE-ECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence            57999999995332             234567888888766655 4442211111   111    12122334677899


Q ss_pred             Eeccchh
Q psy8958         144 VLTKVSQ  150 (294)
Q Consensus       144 VlTK~D~  150 (294)
                      |+||.|+
T Consensus       123 v~nK~Dl  129 (207)
T 1vg8_A          123 LGNKIDL  129 (207)
T ss_dssp             EEECTTS
T ss_pred             EEECCCC
Confidence            9999995

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=87.82  E-value=0.88  Score=43.42  Aligned_cols=79  Identities=13%  Similarity=0.204  Sum_probs=46.0

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhh
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVS  132 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar  132 (294)
                      +++-+.-...+..++ ..++|+|+||...        .     ..++..|+...+.+||+|- |+..+  .+.+.+.+++
T Consensus        89 GiTi~~~~~~~~~~~-~~~~iiDtpGh~~--------f-----~~~~~~~~~~aD~~ilVvD-a~~g~~~qt~~~l~~~~  153 (434)
T 1zun_B           89 GITIDVAYRYFSTAK-RKFIIADTPGHEQ--------Y-----TRNMATGASTCDLAIILVD-ARYGVQTQTRRHSYIAS  153 (434)
T ss_dssp             -CCCCCEEEEEECSS-EEEEEEECCCSGG--------G-----HHHHHHHHTTCSEEEEEEE-TTTCSCHHHHHHHHHHH
T ss_pred             CcEEEeeeeEeecCC-ceEEEEECCChHH--------H-----HHHHHHHHhhCCEEEEEEE-CCCCCcHHHHHHHHHHH
Confidence            344333333344433 4699999999432        1     2334457788886666554 44332  2334456666


Q ss_pred             hcCCCCC-eEEEEeccchhh
Q psy8958         133 QMDPQGK-RTIFVLTKVSQQ  151 (294)
Q Consensus       133 ~~DP~G~-RTIGVlTK~D~~  151 (294)
                      ..   |. ..|.|+||+|+.
T Consensus       154 ~~---~~~~iIvviNK~Dl~  170 (434)
T 1zun_B          154 LL---GIKHIVVAINKMDLN  170 (434)
T ss_dssp             HT---TCCEEEEEEECTTTT
T ss_pred             Hc---CCCeEEEEEEcCcCC
Confidence            65   33 578999999964

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=87.79  E-value=1.1  Score=35.99  Aligned_cols=69  Identities=22%  Similarity=0.421  Sum_probs=39.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcC--CCCceEEEeccCCCcchh-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMS--NPNAIILCIQDGSVDAER-SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~--~p~sIILaV~~a~~D~an-s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||........       .-+.+...|+.  ... +++.|+++.. +.+ ...+..+++   .+.-.|-|.||
T Consensus        54 ~~~~l~Dt~G~~~~~~~~-------~~~~~~~~~~~~~~~~-~~i~v~d~~~-~~~~~~~~~~~~~---~~~piilv~nK  121 (188)
T 2wjg_A           54 EKFKVVDLPGVYSLTANS-------IDEIIARDYIINEKPD-LVVNIVDATA-LERNLYLTLQLME---MGANLLLALNK  121 (188)
T ss_dssp             EEEEEEECCCCSCCSSSS-------HHHHHHHHHHHHHCCS-EEEEEEEGGG-HHHHHHHHHHHHT---TTCCEEEEEEC
T ss_pred             cEEEEEECCCcCcccccc-------HHHHHHHHHHhccCCC-EEEEEecchh-HHHHHHHHHHHHh---cCCCEEEEEEh
Confidence            579999999987643211       11234455554  344 4555666553 322 122223333   45678999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      +|+.
T Consensus       122 ~Dl~  125 (188)
T 2wjg_A          122 MDLA  125 (188)
T ss_dssp             HHHH
T ss_pred             hhcc
Confidence            9964

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=87.62  E-value=1.3  Score=43.50  Aligned_cols=70  Identities=20%  Similarity=0.283  Sum_probs=39.3

Q ss_pred             CCceEEeCCCCc-ccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC--cchhcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGII-STSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV--DAERSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~-~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~--D~ans~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..++|+|+||+. ......+...     -.....|++..+.+|++ ++++.  +....+.+++   +  .+...|-|+||
T Consensus       291 ~~~~l~DTaG~~~~~~~~ve~~g-----i~~~~~~~~~aD~vl~V-vD~s~~~s~~~~~il~~---l--~~~piivV~NK  359 (482)
T 1xzp_A          291 ILFRIVDTAGVRSETNDLVERLG-----IERTLQEIEKADIVLFV-LDASSPLDEEDRKILER---I--KNKRYLVVINK  359 (482)
T ss_dssp             EEEEEEESSCCCSSCCTTCCCCC-----HHHHHHHHHHCSEEEEE-EETTSCCCHHHHHHHHH---H--TTSSEEEEEEE
T ss_pred             eEEEEEECCCccccchhhHHHHH-----HHHHHHHhhcccEEEEE-ecCCCCCCHHHHHHHHH---h--cCCCEEEEEEC
Confidence            359999999987 4322111110     12234577777755555 44443  2223333333   3  24678999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      +|+.
T Consensus       360 ~DL~  363 (482)
T 1xzp_A          360 VDVV  363 (482)
T ss_dssp             CSSC
T ss_pred             cccc
Confidence            9963

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=87.46  E-value=0.96  Score=43.75  Aligned_cols=72  Identities=15%  Similarity=0.279  Sum_probs=43.0

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCC-CeEEEEecc
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQG-KRTIFVLTK  147 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G-~RTIGVlTK  147 (294)
                      .-.++.|||+||....     .......+.. +. .+..|..++ .|++|...   +++...++.+.+.- .-+..|+||
T Consensus       179 ~~~D~vIIDT~G~~~~-----~~~l~~~l~~-i~-~~~~~d~vl-lVvda~~g---~~~~~~~~~~~~~~~~i~gvVlnK  247 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKE-----EKGLLEEMKQ-IK-EITNPDEII-LVIDGTIG---QQAGIQAKAFKEAVGEIGSIIVTK  247 (432)
T ss_dssp             SSCSEEEEECCCSCSS-----HHHHHHHHHH-TT-SSSCCSEEE-EEEEGGGG---GGHHHHHHHHHTTSCSCEEEEEEC
T ss_pred             hCCCEEEEcCCCCccc-----cHHHHHHHHH-HH-HHhcCccee-EEeecccc---HHHHHHHHHHhhcccCCeEEEEeC
Confidence            4468999999998642     1222222222 22 223566544 55555432   46777778777643 338899999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      +|..
T Consensus       248 ~D~~  251 (432)
T 2v3c_C          248 LDGS  251 (432)
T ss_dssp             SSSC
T ss_pred             CCCc
Confidence            9953

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=87.30  E-value=0.38  Score=44.32  Aligned_cols=67  Identities=13%  Similarity=0.264  Sum_probs=39.6

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-ch--hcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AE--RSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~a--ns~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..++|+|+||-             +....+...|++..+.+|+++-..+.+ +.  ......+.+.....+.-.|.|+||
T Consensus       209 ~~l~i~Dt~G~-------------~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK  275 (329)
T 3o47_A          209 ISFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK  275 (329)
T ss_dssp             EEEEEEECC------------------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred             EEEEEEECCCC-------------HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEEC
Confidence            46999999992             223456778888888666655443321 11  112233444444446778999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       276 ~Dl  278 (329)
T 3o47_A          276 QDL  278 (329)
T ss_dssp             TTS
T ss_pred             ccC
Confidence            995

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=87.29  E-value=0.91  Score=44.98  Aligned_cols=65  Identities=12%  Similarity=0.220  Sum_probs=42.5

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      ..++|+|+||.....             ..+..|+.....+|++|-+.+- ...+...++.++   ..+...|.|+||+|
T Consensus        82 ~~i~liDTPG~~df~-------------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~---~~~ipiivviNK~D  145 (529)
T 2h5e_A           82 CLVNLLDTPGHEDFS-------------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR---LRDTPILTFMNKLD  145 (529)
T ss_dssp             EEEEEECCCCSTTCC-------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHT---TTTCCEEEEEECTT
T ss_pred             eEEEEEECCCChhHH-------------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHH---HcCCCEEEEEcCcC
Confidence            579999999974321             3456788888877776655442 222333344444   44677899999999


Q ss_pred             hh
Q psy8958         150 QQ  151 (294)
Q Consensus       150 ~~  151 (294)
                      +.
T Consensus       146 l~  147 (529)
T 2h5e_A          146 RD  147 (529)
T ss_dssp             SC
T ss_pred             Cc
Confidence            63

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=87.25  E-value=0.63  Score=38.25  Aligned_cols=68  Identities=16%  Similarity=0.216  Sum_probs=41.3

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc-HHHHhhhh-cCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS-NVTDLVSQ-MDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans-~al~lar~-~DP~G~RTIGVlT  146 (294)
                      ...+.|+|+||...              ..+...|++..+.+|+++-..+.+ +.+. ..+....+ ....+.-.|-|+|
T Consensus        75 ~~~~~l~Dt~G~~~--------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~N  140 (196)
T 2atv_A           75 VVSMEILDTAGQED--------------TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGN  140 (196)
T ss_dssp             EEEEEEEECCCCCC--------------CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             EEEEEEEECCCCCc--------------ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEE
Confidence            35689999999654              255667788788776665443321 1111 11232332 3344677899999


Q ss_pred             cchhh
Q psy8958         147 KVSQQ  151 (294)
Q Consensus       147 K~D~~  151 (294)
                      |.|+.
T Consensus       141 K~Dl~  145 (196)
T 2atv_A          141 KADLD  145 (196)
T ss_dssp             CGGGG
T ss_pred             Ccccc
Confidence            99963

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=87.21  E-value=0.88  Score=35.95  Aligned_cols=69  Identities=12%  Similarity=0.036  Sum_probs=36.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc-HHHHhhhh-cCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS-NVTDLVSQ-MDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans-~al~lar~-~DP~G~RTIGVlTK  147 (294)
                      ..+.++|+||....           .-..+...|++..+++|+++...+.+ +.+. ..+...++ ....+.-.|.|+||
T Consensus        52 ~~~~~~D~~g~~~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK  120 (175)
T 2nzj_A           52 TTLVVVDTWEAEKL-----------DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNK  120 (175)
T ss_dssp             EEEEEECCC------------------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEEC
T ss_pred             EEEEEEecCCCCcc-----------chhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEC
Confidence            46899999996431           01345567888888777766544321 1111 12222333 23446778999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      +|+
T Consensus       121 ~Dl  123 (175)
T 2nzj_A          121 ADL  123 (175)
T ss_dssp             TTC
T ss_pred             hhh
Confidence            995

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=87.12  E-value=0.67  Score=38.46  Aligned_cols=67  Identities=16%  Similarity=0.146  Sum_probs=42.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..|.|+|+||.....             .+...|+++.+.+|+++-..+.+ +.+  ...+...+...| +.-.|-|+||
T Consensus        57 ~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK  122 (212)
T 2j0v_A           57 VNLGLWDTAGQEDYS-------------RLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTK  122 (212)
T ss_dssp             EEEEEECCCCCCCCC-------------C--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEEC
T ss_pred             EEEEEEECCCcHHHH-------------HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeC
Confidence            579999999974321             34567888888777766433321 112  133455555555 5778999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      .|+.
T Consensus       123 ~Dl~  126 (212)
T 2j0v_A          123 LDLR  126 (212)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            9964

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=86.91  E-value=1.2  Score=40.29  Aligned_cols=73  Identities=11%  Similarity=0.112  Sum_probs=45.2

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh----cHHHHhhhhcCCCCCeEEEE
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER----SNVTDLVSQMDPQGKRTIFV  144 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an----s~al~lar~~DP~G~RTIGV  144 (294)
                      -..+.|+|+||...        ........+...|++..+.+|+++-..+.+ +.+    ...+...+...| +.-.+.|
T Consensus        51 ~~~l~i~Dt~G~~~--------~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~-~~piilv  121 (307)
T 3r7w_A           51 NMTLNLWDCGGQDV--------FMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSP-DAKIFVL  121 (307)
T ss_dssp             TEEEEEEEECCSHH--------HHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCT-TCEEEEE
T ss_pred             ceEEEEEECCCcHH--------HhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCC-CCeEEEE
Confidence            56799999999432        122333567888889888776665443322 111    112333444444 4789999


Q ss_pred             eccchhh
Q psy8958         145 LTKVSQQ  151 (294)
Q Consensus       145 lTK~D~~  151 (294)
                      +||.|+.
T Consensus       122 ~NK~Dl~  128 (307)
T 3r7w_A          122 LHKMDLV  128 (307)
T ss_dssp             EECGGGS
T ss_pred             Eeccccc
Confidence            9999964

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=86.77  E-value=0.32  Score=38.75  Aligned_cols=65  Identities=18%  Similarity=0.122  Sum_probs=39.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcH---HHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSN---VTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~---al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.|+|+||....             ..+...|+...+.+|+++-..+. -.-..   .+...++.-+ ....|.|+||
T Consensus        58 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~p~ilv~nK  122 (181)
T 3tw8_B           58 VKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYDVTSA-ESFVNVKRWLHEINQNCD-DVCRILVGNK  122 (181)
T ss_dssp             EEEEEEEETTGGGC-------------SSCCGGGGTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHCT-TSEEEEEEEC
T ss_pred             EEEEEEcCCCchhh-------------hhhHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence            46999999994322             23566788888877665544332 11111   2233333333 4678999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       123 ~Dl  125 (181)
T 3tw8_B          123 NDD  125 (181)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            995

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=86.74  E-value=0.74  Score=40.84  Aligned_cols=67  Identities=16%  Similarity=0.182  Sum_probs=42.5

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..|.|+|+||....             ..+...|+++.+.+|+++-..+.+ +.+.  ..+...+...+ +...|.|+||
T Consensus       203 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK  268 (332)
T 2wkq_A          203 VNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTK  268 (332)
T ss_dssp             EEEEEEEECCCGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEEC
T ss_pred             EEEEEEeCCCchhh-------------hHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEc
Confidence            45779999996432             256678888888776655443321 1111  22345555555 6789999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      +|+.
T Consensus       269 ~Dl~  272 (332)
T 2wkq_A          269 LDLR  272 (332)
T ss_dssp             HHHH
T ss_pred             hhcc
Confidence            9964

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=86.51  E-value=0.69  Score=45.12  Aligned_cols=64  Identities=19%  Similarity=0.298  Sum_probs=42.1

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..++|+|+||..            + ....+..|+...+.+||+| +|+..  ..+.+.+.+++..   |...|-|+||+
T Consensus        73 ~~i~iiDtPGh~------------~-~~~~~~~~~~~aD~~ilVv-da~~g~~~qt~e~l~~~~~~---~ip~IvviNK~  135 (482)
T 1wb1_A           73 YRITLVDAPGHA------------D-LIRAVVSAADIIDLALIVV-DAKEGPKTQTGEHMLILDHF---NIPIIVVITKS  135 (482)
T ss_dssp             EEEEECCCSSHH------------H-HHHHHHHHTTSCCEEEEEE-ETTTCSCHHHHHHHHHHHHT---TCCBCEEEECT
T ss_pred             EEEEEEECCChH------------H-HHHHHHHHHhhCCEEEEEE-ecCCCccHHHHHHHHHHHHc---CCCEEEEEECC
Confidence            579999999941            2 2344556777787666655 45432  2344555666664   56679999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       136 Dl~  138 (482)
T 1wb1_A          136 DNA  138 (482)
T ss_dssp             TSS
T ss_pred             Ccc
Confidence            964

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=85.95  E-value=0.53  Score=46.67  Aligned_cols=71  Identities=14%  Similarity=0.259  Sum_probs=42.4

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCe-EEEEecc
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKR-TIFVLTK  147 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~R-TIGVlTK  147 (294)
                      .-.++.|||+||.....     ......+..+.. ++ .|..+ |.|++|...   +++...++.+... .. ++.|+||
T Consensus       182 ~~~DvvIIDTpG~~~~~-----~~l~~el~~~~~-~i-~pd~v-llVvDa~~g---~~~~~~a~~~~~~-~~i~gvVlNK  249 (504)
T 2j37_W          182 ENFEIIIVDTSGRHKQE-----DSLFEEMLQVAN-AI-QPDNI-VYVMDASIG---QACEAQAKAFKDK-VDVASVIVTK  249 (504)
T ss_dssp             TTCCEEEEEECCCCTTC-----HHHHHHHHHHHH-HH-CCSEE-EEEEETTCC---TTHHHHHHHHHHH-HCCCCEEEEC
T ss_pred             CCCcEEEEeCCCCcccc-----hhHHHHHHHHHh-hh-cCceE-EEEEecccc---ccHHHHHHHHHhh-cCceEEEEeC
Confidence            34589999999987521     233344444333 33 56655 556666543   2356666666543 22 5789999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      .|..
T Consensus       250 ~D~~  253 (504)
T 2j37_W          250 LDGH  253 (504)
T ss_dssp             TTSC
T ss_pred             Cccc
Confidence            9953

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=85.77  E-value=0.39  Score=43.68  Aligned_cols=74  Identities=12%  Similarity=0.282  Sum_probs=43.7

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                      ..++++|+||+...+.    ..+.......+..+++.-..+ +.|+++.. +...+- .+++.+...+.-.|.|++|+|+
T Consensus        56 ~~i~~iDTpG~~~~~~----~~l~~~~~~~~~~~l~~~D~v-l~Vvd~~~-~~~~~~-~i~~~l~~~~~P~ilvlNK~D~  128 (301)
T 1ega_A           56 YQAIYVDTPGLHMEEK----RAINRLMNKAASSSIGDVELV-IFVVEGTR-WTPDDE-MVLNKLREGKAPVILAVNKVDN  128 (301)
T ss_dssp             EEEEEESSSSCCHHHH----HHHHHHHTCCTTSCCCCEEEE-EEEEETTC-CCHHHH-HHHHHHHSSSSCEEEEEESTTT
T ss_pred             eeEEEEECcCCCccch----hhHHHHHHHHHHHHHhcCCEE-EEEEeCCC-CCHHHH-HHHHHHHhcCCCEEEEEECccc
Confidence            4699999999862110    112223334466777777754 45555554 544332 3344443446778999999996


Q ss_pred             h
Q psy8958         151 Q  151 (294)
Q Consensus       151 ~  151 (294)
                      .
T Consensus       129 ~  129 (301)
T 1ega_A          129 V  129 (301)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=85.71  E-value=1  Score=36.59  Aligned_cols=68  Identities=12%  Similarity=0.223  Sum_probs=41.8

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlT  146 (294)
                      ...+.|+|+||....             +.+...|+...+.+|+++-..+.+ +.+  ...+...++..| +...|-|.|
T Consensus        54 ~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~n  119 (184)
T 1m7b_A           54 RIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGC  119 (184)
T ss_dssp             EEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEE
T ss_pred             EEEEEEEECCCChhh-------------hhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEE
Confidence            356899999995322             245667888888776665443321 111  122344445444 477899999


Q ss_pred             cchhh
Q psy8958         147 KVSQQ  151 (294)
Q Consensus       147 K~D~~  151 (294)
                      |.|+.
T Consensus       120 K~Dl~  124 (184)
T 1m7b_A          120 KSDLR  124 (184)
T ss_dssp             CGGGG
T ss_pred             cchhh
Confidence            99964

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=85.51  E-value=1.6  Score=44.08  Aligned_cols=80  Identities=19%  Similarity=0.177  Sum_probs=49.7

Q ss_pred             cccccceEEEEeCCCC--CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHh
Q psy8958          55 TVSNEVISMSVKGPGL--QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDL  130 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~--p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~l  130 (294)
                      ++....+.+....++-  ..++|+|+||....             ...+..+++.-..+|| |++|+...  .+...+.+
T Consensus        55 TI~~~~~~~~~~~~dg~~~~inliDTPGh~dF-------------~~ev~r~l~~aD~aIL-VVDa~~gv~~qt~~~~~~  120 (600)
T 2ywe_A           55 TVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF-------------SYEVSRALAACEGALL-LIDASQGIEAQTVANFWK  120 (600)
T ss_dssp             -CCCCSEEEEEECTTSCEEEEEEECCCCSGGG-------------HHHHHHHHHTCSEEEE-EEETTTBCCHHHHHHHHH
T ss_pred             eeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH-------------HHHHHHHHHhCCEEEE-EEECCCCccHHHHHHHHH
Confidence            3445566666654332  57899999997532             2345566777776666 55555433  34444555


Q ss_pred             hhhcCCCCCeEEEEeccchhh
Q psy8958         131 VSQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       131 ar~~DP~G~RTIGVlTK~D~~  151 (294)
                      +..   .+...|.|++|+|+.
T Consensus       121 a~~---~~ipiIvviNKiDl~  138 (600)
T 2ywe_A          121 AVE---QDLVIIPVINKIDLP  138 (600)
T ss_dssp             HHH---TTCEEEEEEECTTST
T ss_pred             HHH---CCCCEEEEEeccCcc
Confidence            554   357799999999963

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=85.45  E-value=1.3  Score=42.39  Aligned_cols=72  Identities=18%  Similarity=0.201  Sum_probs=44.0

Q ss_pred             EEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-------c--hhcHHHHhhhh
Q psy8958          63 MSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-------A--ERSNVTDLVSQ  133 (294)
Q Consensus        63 leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-------~--ans~al~lar~  133 (294)
                      ..+..++ ..++|+|+||...             ....+..|+...+.+||+|-..+ .       +  .+.+.+.+++.
T Consensus        77 ~~~~~~~-~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~  141 (435)
T 1jny_A           77 MRFETKK-YFFTIIDAPGHRD-------------FVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT  141 (435)
T ss_dssp             CEEECSS-CEEEECCCSSSTT-------------HHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH
T ss_pred             EEEecCC-eEEEEEECCCcHH-------------HHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH
Confidence            3455554 3699999999542             12345668888887766655443 3       2  22334455555


Q ss_pred             cCCCCCeEEEEeccchhh
Q psy8958         134 MDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       134 ~DP~G~RTIGVlTK~D~~  151 (294)
                      ..  -..-|.|+||+|+.
T Consensus       142 ~~--~~~iivviNK~Dl~  157 (435)
T 1jny_A          142 MG--LDQLIVAVNKMDLT  157 (435)
T ss_dssp             TT--CTTCEEEEECGGGS
T ss_pred             cC--CCeEEEEEEcccCC
Confidence            43  13468999999964

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=85.41  E-value=1.3  Score=45.45  Aligned_cols=64  Identities=13%  Similarity=0.195  Sum_probs=42.2

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||...             ....+..|++.-+.+||+|- |+...  .+...++.++.   .+...|.|+||+
T Consensus        82 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD~aIlVvD-a~~gv~~qt~~~~~~~~~---~~ip~ilviNKi  144 (704)
T 2rdo_7           82 HRINIIDTPGHVD-------------FTIEVERSMRVLDGAVMVYC-AVGGVQPQSETVWRQANK---YKVPRIAFVNKM  144 (704)
T ss_pred             eeEEEEeCCCccc-------------hHHHHHHHHHHCCEEEEEEe-CCCCCcHHHHHHHHHHHH---cCCCEEEEEeCC
Confidence            6799999999653             12456677777776665554 44333  23444555544   467889999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       145 D~~  147 (704)
T 2rdo_7          145 DRM  147 (704)
T ss_pred             Ccc
Confidence            963

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=85.18  E-value=0.57  Score=47.93  Aligned_cols=65  Identities=15%  Similarity=0.295  Sum_probs=41.9

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCC-CcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGS-VDAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~-~D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      ..+.|+|+||.....             ..+..|++..+.+|++|-+.+ ....+...++.+++.   +...|.|++|.|
T Consensus        75 ~~i~liDTPG~~df~-------------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~---~~p~ilviNK~D  138 (693)
T 2xex_A           75 HRVNIIDTPGHVDFT-------------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY---GVPRIVFVNKMD  138 (693)
T ss_dssp             EEEEEECCCCCSSCC-------------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCCEEEEEECTT
T ss_pred             eeEEEEECcCCcchH-------------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc---CCCEEEEEECCC
Confidence            569999999986421             234566666776655554433 223344455555553   678999999999


Q ss_pred             hh
Q psy8958         150 QQ  151 (294)
Q Consensus       150 ~~  151 (294)
                      +.
T Consensus       139 l~  140 (693)
T 2xex_A          139 KL  140 (693)
T ss_dssp             ST
T ss_pred             cc
Confidence            64

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=85.08  E-value=0.32  Score=39.63  Aligned_cols=67  Identities=19%  Similarity=0.235  Sum_probs=38.8

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc-HHHHhhhhcC--CCCCeEEEEec
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS-NVTDLVSQMD--PQGKRTIFVLT  146 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans-~al~lar~~D--P~G~RTIGVlT  146 (294)
                      ..++|+|+||...             ...+...|+...+.+|+++-..+.+ +.+. ..+....++.  ..+...|.|+|
T Consensus        56 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~n  122 (199)
T 2gf0_A           56 CTLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGN  122 (199)
T ss_dssp             EEEEEEECCGGGS-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEE
T ss_pred             EEEEEEeCCChHH-------------hHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            4699999999432             1245667777777766665443321 1111 1222233322  12467899999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|+
T Consensus       123 K~Dl  126 (199)
T 2gf0_A          123 KCDE  126 (199)
T ss_dssp             CTTC
T ss_pred             CccC
Confidence            9995

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=85.05  E-value=0.73  Score=47.11  Aligned_cols=65  Identities=14%  Similarity=0.233  Sum_probs=43.8

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAERSNVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~ans~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      ..++|+|+||...             ....+..|+...+.+|++|-+.+. ...+...++.+++.   +...|.|+||.|
T Consensus        77 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~---~~p~ivviNKiD  140 (691)
T 1dar_A           77 HRINIIDTPGHVD-------------FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY---KVPRIAFANKMD  140 (691)
T ss_dssp             EEEEEECCCSSTT-------------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT---TCCEEEEEECTT
T ss_pred             eEEEEEECcCccc-------------hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc---CCCEEEEEECCC
Confidence            5799999999743             124566777777866665554432 23344556666654   678899999999


Q ss_pred             hh
Q psy8958         150 QQ  151 (294)
Q Consensus       150 ~~  151 (294)
                      +.
T Consensus       141 ~~  142 (691)
T 1dar_A          141 KT  142 (691)
T ss_dssp             ST
T ss_pred             cc
Confidence            64

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=84.92  E-value=0.64  Score=43.52  Aligned_cols=79  Identities=13%  Similarity=0.141  Sum_probs=38.1

Q ss_pred             CCceEEeCCCCcccCCCC-CChhHHHHHHHHhhhhcCCC-------------CceEEEeccCCCcchhcHHHHhhhhcCC
Q psy8958          71 QRMVLVDLPGIISTSTQD-MASDTRDLIRQMTQTHMSNP-------------NAIILCIQDGSVDAERSNVTDLVSQMDP  136 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~-q~~~~~~~i~~Lv~~Yi~~p-------------~sIILaV~~a~~D~ans~al~lar~~DP  136 (294)
                      ..|+++|+||+-...... .-..+...|.+....|+...             +++++.|.++...+...+. .+.+.+. 
T Consensus        95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~-~~~~~l~-  172 (361)
T 2qag_A           95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-AFMKAIH-  172 (361)
T ss_dssp             EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH-HHHHHTC-
T ss_pred             cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH-HHHHHhc-
Confidence            469999999985433211 11123333444444555432             2455666654544544432 4455555 


Q ss_pred             CCCeEEEEeccchhh
Q psy8958         137 QGKRTIFVLTKVSQQ  151 (294)
Q Consensus       137 ~G~RTIGVlTK~D~~  151 (294)
                      .+.-.|-|+||+|+.
T Consensus       173 ~~~piIlV~NK~Dl~  187 (361)
T 2qag_A          173 NKVNIVPVIAKADTL  187 (361)
T ss_dssp             S-SCEEEEEECCSSS
T ss_pred             cCCCEEEEEECCCCC
Confidence            457799999999964

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=84.38  E-value=2.7  Score=38.72  Aligned_cols=99  Identities=11%  Similarity=-0.005  Sum_probs=55.1

Q ss_pred             CcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhh---cC-CChHHHHHHHcCCcccCCCCCeEEEEeCCC
Q psy8958         180 KHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEE---NH-SDPQRIKKILAGKLFPMKALGYFAVVTGRG  255 (294)
Q Consensus       180 ~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~---~~-~~~~~~~~il~~~~~~L~~lG~~~v~~~~~  255 (294)
                      ..+..++.+.|..||.+.||-.....+.++++|+..++--|.+.   .+ ....++.+.|....-.|++||-...-. + 
T Consensus       251 ~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~lg~~~~~~-~-  328 (360)
T 3t34_A          251 NVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRLGKPIAHG-T-  328 (360)
T ss_dssp             TCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC--------------
T ss_pred             CCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCC-H-
Confidence            34566788899999999987666556677888887777665543   22 245678899999999999999752221 2 


Q ss_pred             CCCCccHHHHHHHHHHHhccChhhhhh
Q psy8958         256 GKKDESIQDIKEYEENFFKKSKLFSTK  282 (294)
Q Consensus       256 ~~~~~~~~~~~~~e~~~f~~~~~~~~~  282 (294)
                        .......+.+.+..+++.-.+|...
T Consensus       329 --~~~~~~~~~~~~~~~~~~~~~~~~~  353 (360)
T 3t34_A          329 --DSRVDPAIMERRSAISKRLELYRAA  353 (360)
T ss_dssp             ----------CCCTTHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1122223345555666655555543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=83.88  E-value=1.3  Score=37.25  Aligned_cols=68  Identities=12%  Similarity=0.223  Sum_probs=42.4

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEec
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlT  146 (294)
                      ...+.|+|+||....             +.+...|+++.+.+|+++-..+.+ +.+  ...+...++.-+ +...|.|.|
T Consensus        75 ~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~n  140 (205)
T 1gwn_A           75 RIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGC  140 (205)
T ss_dssp             EEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEE
T ss_pred             EEEEEEEeCCCcHhh-------------hHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEe
Confidence            357999999995432             235667888888776665443321 111  122344455444 478899999


Q ss_pred             cchhh
Q psy8958         147 KVSQQ  151 (294)
Q Consensus       147 K~D~~  151 (294)
                      |+|+.
T Consensus       141 K~Dl~  145 (205)
T 1gwn_A          141 KSDLR  145 (205)
T ss_dssp             CGGGG
T ss_pred             chhhc
Confidence            99964

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=84.33  E-value=0.21  Score=41.47  Aligned_cols=67  Identities=18%  Similarity=0.179  Sum_probs=41.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..|.|+|+||...             ...+...|+++.+.+|+++-..+.+ +.+.  ..+...+...+ +...|-|+||
T Consensus        78 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK  143 (204)
T 3th5_A           78 VNLGLWDTAGQED-------------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTK  143 (204)
Confidence            4678999999432             2356677888888777665433321 2221  23344444434 5678999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      .|+.
T Consensus       144 ~Dl~  147 (204)
T 3th5_A          144 LDLR  147 (204)
Confidence            9963

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=83.66  E-value=1.3  Score=37.43  Aligned_cols=67  Identities=15%  Similarity=0.245  Sum_probs=45.0

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..|.|+|+||....             +.+...|+++.+.+|+++-..+.+ +.+  ...+...+...+ +.-.|-|.||
T Consensus        75 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK  140 (214)
T 3q3j_B           75 VELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCK  140 (214)
T ss_dssp             EEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEEC
T ss_pred             EEEEEEECCCCHhH-------------HHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence            47899999995322             346778999988777766554432 222  344556666654 4778999999


Q ss_pred             chhh
Q psy8958         148 VSQQ  151 (294)
Q Consensus       148 ~D~~  151 (294)
                      +|+.
T Consensus       141 ~Dl~  144 (214)
T 3q3j_B          141 TDLR  144 (214)
T ss_dssp             GGGG
T ss_pred             hhhc
Confidence            9964

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=83.53  E-value=0.51  Score=47.13  Aligned_cols=67  Identities=12%  Similarity=0.243  Sum_probs=43.5

Q ss_pred             CCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCCCCeEEEEe
Q psy8958          68 PGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQGKRTIFVL  145 (294)
Q Consensus        68 P~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~G~RTIGVl  145 (294)
                      ++-..++|+|+||.-..             ..|...|++..+.+||+| +++..  ..+.+.+..++..   +...|-|+
T Consensus        49 ~~g~~i~~iDTPGhe~f-------------~~~~~~~~~~aD~vILVV-Da~dg~~~qt~e~l~~~~~~---~vPiIVVi  111 (537)
T 3izy_P           49 PSGEKITFLDTPGHAAF-------------SAMRARGTQVTDIVILVV-AADDGVMKQTVESIQHAKDA---HVPIVLAI  111 (537)
T ss_dssp             SCSSCCBCEECSSSCCT-------------TTSBBSSSBSBSSCEEEC-BSSSCCCHHHHHHHHHHHTT---TCCEEECC
T ss_pred             CCCCEEEEEECCChHHH-------------HHHHHHHHccCCEEEEEE-ECCCCccHHHHHHHHHHHHc---CCcEEEEE
Confidence            34457999999994321             245667888877666555 44432  2344555555554   56799999


Q ss_pred             ccchhh
Q psy8958         146 TKVSQQ  151 (294)
Q Consensus       146 TK~D~~  151 (294)
                      ||.|+.
T Consensus       112 NKiDl~  117 (537)
T 3izy_P          112 NKCDKA  117 (537)
T ss_dssp             BSGGGT
T ss_pred             eccccc
Confidence            999963

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=83.51  E-value=0.48  Score=44.37  Aligned_cols=80  Identities=21%  Similarity=0.321  Sum_probs=44.2

Q ss_pred             EeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC----cc-hh-cHHHHhhhhcCC--
Q psy8958          65 VKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV----DA-ER-SNVTDLVSQMDP--  136 (294)
Q Consensus        65 I~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~----D~-an-s~al~lar~~DP--  136 (294)
                      +.-++...++|+|+||++..+....  .+...    ..++++..+.+| .|++++.    +. .. ..++...+.+++  
T Consensus       200 v~~~~~~~~~l~DtPG~i~~a~~~~--~l~~~----fl~~i~~~d~ll-~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l  272 (342)
T 1lnz_A          200 VETDDGRSFVMADLPGLIEGAHQGV--GLGHQ----FLRHIERTRVIV-HVIDMSGLEGRDPYDDYLTINQELSEYNLRL  272 (342)
T ss_dssp             EECSSSCEEEEEEHHHHHHHTTCTT--TTHHH----HHHHHHHCCEEE-EEEESSCSSCCCHHHHHHHHHHHHHHSCSST
T ss_pred             EEeCCCceEEEecCCCCcccccccc--hhHHH----HHHHHHhccEEE-EEEECCcccccChHHHHHHHHHHHHHhhhhh
Confidence            3334445799999999987554332  11111    122334455554 4555542    22 11 223445566665  


Q ss_pred             CCCeEEEEeccchhh
Q psy8958         137 QGKRTIFVLTKVSQQ  151 (294)
Q Consensus       137 ~G~RTIGVlTK~D~~  151 (294)
                      ...-.|-|+||+|+.
T Consensus       273 ~~~p~ilV~NK~Dl~  287 (342)
T 1lnz_A          273 TERPQIIVANKMDMP  287 (342)
T ss_dssp             TTSCBCBEEECTTST
T ss_pred             cCCCEEEEEECccCC
Confidence            356789999999953

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=83.41  E-value=0.99  Score=38.90  Aligned_cols=71  Identities=20%  Similarity=0.232  Sum_probs=36.7

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHH---hh-hhcCCCCCeEEEEec
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTD---LV-SQMDPQGKRTIFVLT  146 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~---la-r~~DP~G~RTIGVlT  146 (294)
                      .++.|||+||......      ....-..++ .++..  .+|+.|+++.......+...   .. ......+...+.|+|
T Consensus       109 ~d~iiiDtpG~~~~~~------~~~l~~~~~-~~~~~--~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~N  179 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFL------FHEFGVRLM-ENLPY--PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALN  179 (262)
T ss_dssp             CSEEEEECCSSHHHHH------HSHHHHHHH-HTSSS--CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred             CCEEEEeCCCccchhh------hhhhHHHHH-HHHhh--ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEe
Confidence            5799999999764221      111122333 34444  67777776653222111111   01 111112356789999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |+|+
T Consensus       180 K~D~  183 (262)
T 1yrb_A          180 KVDL  183 (262)
T ss_dssp             CGGG
T ss_pred             cccc
Confidence            9995

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=83.32  E-value=2.2  Score=38.91  Aligned_cols=73  Identities=18%  Similarity=0.327  Sum_probs=43.2

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      .-.++.|||+||......   .......++.+ ...+ .+..++|+ +++..   .+++++.++.+.+.-.-+..|+||.
T Consensus       179 ~~~D~ViIDTpg~~~~~~---~~~l~~el~~i-~~~~-~~d~vllV-vda~~---g~~~~~~~~~~~~~~~i~gvVlnk~  249 (297)
T 1j8m_F          179 EKMEIIIVDTAGRHGYGE---EAALLEEMKNI-YEAI-KPDEVTLV-IDASI---GQKAYDLASKFNQASKIGTIIITKM  249 (297)
T ss_dssp             TTCSEEEEECCCSCCTTC---HHHHHHHHHHH-HHHH-CCSEEEEE-EEGGG---GGGHHHHHHHHHHTCTTEEEEEECG
T ss_pred             CCCCEEEEeCCCCccccc---HHHHHHHHHHH-HHHh-cCCEEEEE-eeCCc---hHHHHHHHHHHHhhCCCCEEEEeCC
Confidence            346899999999875211   11233333333 2222 45555555 44442   4777888888776433367789999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |.
T Consensus       250 D~  251 (297)
T 1j8m_F          250 DG  251 (297)
T ss_dssp             GG
T ss_pred             CC
Confidence            84

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=83.14  E-value=1.7  Score=43.88  Aligned_cols=80  Identities=15%  Similarity=0.248  Sum_probs=47.3

Q ss_pred             cccccceEEEEeCCC--CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHh
Q psy8958          55 TVSNEVISMSVKGPG--LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDL  130 (294)
Q Consensus        55 ~~S~~~I~leI~gP~--~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~l  130 (294)
                      ++....+.+...+++  -..++|+|+||....             ...+..|++.-..+||+| +|+.-  ..+...+..
T Consensus        53 Ti~~~~~~~~~~~~~g~~~~l~liDTPGh~dF-------------~~ev~~~l~~aD~aILVV-Da~~gv~~qt~~~~~~  118 (599)
T 3cb4_D           53 TIKAQSVTLDYKASDGETYQLNFIDTPGHVDF-------------SYEVSRSLAACEGALLVV-DAGQGVEAQTLANCYT  118 (599)
T ss_dssp             ----CEEEEEEECTTSCEEEEEEEECCCCGGG-------------HHHHHHHHHHCSEEEEEE-ETTTCCCTHHHHHHHH
T ss_pred             eeeeeEEEEEEecCCCCeEEEEEEECCCchHH-------------HHHHHHHHHHCCEEEEEE-ECCCCCCHHHHHHHHH
Confidence            344555666655422  357999999996431             234566677777665555 44432  334444555


Q ss_pred             hhhcCCCCCeEEEEeccchhh
Q psy8958         131 VSQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       131 ar~~DP~G~RTIGVlTK~D~~  151 (294)
                      +...   +...|.|+||.|+.
T Consensus       119 ~~~~---~ipiIvViNKiDl~  136 (599)
T 3cb4_D          119 AMEM---DLEVVPVLNKIDLP  136 (599)
T ss_dssp             HHHT---TCEEEEEEECTTST
T ss_pred             HHHC---CCCEEEeeeccCcc
Confidence            5543   56799999999963

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=82.34  E-value=4.3  Score=37.43  Aligned_cols=74  Identities=19%  Similarity=0.216  Sum_probs=42.1

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC----cchhc-HHHHhhhhcCCCCCeEEEEe
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV----DAERS-NVTDLVSQMDPQGKRTIFVL  145 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~----D~ans-~al~lar~~DP~G~RTIGVl  145 (294)
                      ..+.++|+||+...+..... .+.   ...+..+....+.+ |.|++++.    |+.++ ..+...+..-+ +.-.|-|+
T Consensus       214 ~~~~l~Dt~G~~~~~~~~~~-~~~---~~~~~~~~~~ad~i-llV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~  287 (357)
T 2e87_A          214 FRYQIIDTPGLLDRPISERN-EIE---KQAILALRYLGNLI-IYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVI  287 (357)
T ss_dssp             EEEEEEECTTTSSSCSTTSC-HHH---HHHHHGGGGTCSEE-EEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEE
T ss_pred             ceEEEEeCCCccccchhhhh-HHH---HHHHHHHHhcCCEE-EEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEE
Confidence            46899999999765432221 222   22333444455544 45555443    44443 33444444333 67899999


Q ss_pred             ccchh
Q psy8958         146 TKVSQ  150 (294)
Q Consensus       146 TK~D~  150 (294)
                      ||.|+
T Consensus       288 NK~Dl  292 (357)
T 2e87_A          288 NKIDV  292 (357)
T ss_dssp             CCTTT
T ss_pred             ECccc
Confidence            99995

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=82.03  E-value=1.2  Score=35.02  Aligned_cols=68  Identities=9%  Similarity=0.069  Sum_probs=36.6

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..|.++|+||......            .+...|++..+.+|+++-..+.+ +..  .....+.+.....+.-.|-|.||
T Consensus        51 ~~~~i~D~~g~~~~~~------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK  118 (169)
T 3q85_A           51 VTLIVYDIWEQGDAGG------------WLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK  118 (169)
T ss_dssp             EEEEEECCCCC--------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred             EEEEEEECCCccccch------------hhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeC
Confidence            4688999999643211            14445666677666655443321 111  11223333444446788999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       119 ~Dl  121 (169)
T 3q85_A          119 SDL  121 (169)
T ss_dssp             TTC
T ss_pred             cch
Confidence            995

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=81.57  E-value=0.84  Score=44.22  Aligned_cols=64  Identities=19%  Similarity=0.254  Sum_probs=36.1

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc---------hhcHHHHhhhhcCCCCC-e
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA---------ERSNVTDLVSQMDPQGK-R  140 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~---------ans~al~lar~~DP~G~-R  140 (294)
                      ..++|+|+||...             ...++..|+...+.+||+|- |+...         .+.+.+.+++..   |. +
T Consensus       121 ~~~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvD-a~~g~~e~sf~~~~qt~e~l~~~~~~---~vp~  183 (467)
T 1r5b_A          121 RRFSLLDAPGHKG-------------YVTNMINGASQADIGVLVIS-ARRGEFEAGFERGGQTREHAVLARTQ---GINH  183 (467)
T ss_dssp             EEEEECCCCC------------------------TTSCSEEEEEEE-CSTTHHHHTTSTTCCHHHHHHHHHHT---TCSS
T ss_pred             eEEEEEECCCcHH-------------HHHHHHhhcccCCEEEEEEe-CCcCccccccCCCCcHHHHHHHHHHc---CCCE
Confidence            4689999999532             12334566788887766654 44322         344455566554   44 4


Q ss_pred             EEEEeccchhh
Q psy8958         141 TIFVLTKVSQQ  151 (294)
Q Consensus       141 TIGVlTK~D~~  151 (294)
                      -|.|+||+|+.
T Consensus       184 iivviNK~Dl~  194 (467)
T 1r5b_A          184 LVVVINKMDEP  194 (467)
T ss_dssp             EEEEEECTTST
T ss_pred             EEEEEECccCC
Confidence            78999999963

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=81.29  E-value=1.9  Score=41.72  Aligned_cols=71  Identities=18%  Similarity=0.299  Sum_probs=43.1

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      .-.++.|||+||....     .......+..+ ...+ .|..++|+ +++.   ..+++...++.+.+.-.-+--|+||.
T Consensus       179 ~~~DvVIIDTaG~l~~-----d~~l~~el~~i-~~~~-~pd~vlLV-vDa~---tgq~av~~a~~f~~~l~i~GVIlTKl  247 (425)
T 2ffh_A          179 EARDLILVDTAGRLQI-----DEPLMGELARL-KEVL-GPDEVLLV-LDAM---TGQEALSVARAFDEKVGVTGLVLTKL  247 (425)
T ss_dssp             TTCSEEEEECCCCSSC-----CHHHHHHHHHH-HHHH-CCSEEEEE-EEGG---GTTHHHHHHHHHHHHTCCCEEEEESG
T ss_pred             CCCCEEEEcCCCcccc-----cHHHHHHHHHh-hhcc-CCceEEEE-Eecc---chHHHHHHHHHHHhcCCceEEEEeCc
Confidence            4568999999996643     12233333222 1222 46656554 4444   24788888888876434466689999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |.
T Consensus       248 D~  249 (425)
T 2ffh_A          248 DG  249 (425)
T ss_dssp             GG
T ss_pred             CC
Confidence            84

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=80.97  E-value=0.65  Score=39.00  Aligned_cols=81  Identities=10%  Similarity=0.000  Sum_probs=46.4

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhh
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVS  132 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar  132 (294)
                      +++-....+.+.+. ...+.|+|+||....             ..+...|+.+.+.+|+++-..+.+ +.+ ...+....
T Consensus        49 ~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  114 (221)
T 3gj0_A           49 GVEVHPLVFHTNRG-PIKFNVWDTAGQEKF-------------GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV  114 (221)
T ss_dssp             TEEEEEEEEEETTE-EEEEEEEEECSGGGT-------------SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             ceeEEEEEEEECCE-EEEEEEEeCCChHHH-------------hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            34444445544433 356999999994322             235567888888776665443321 111 12233344


Q ss_pred             hcCCCCCeEEEEeccchh
Q psy8958         133 QMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       133 ~~DP~G~RTIGVlTK~D~  150 (294)
                      +.-+ +...|.|+||.|+
T Consensus       115 ~~~~-~~p~ilv~nK~Dl  131 (221)
T 3gj0_A          115 RVCE-NIPIVLCGNKVDI  131 (221)
T ss_dssp             HHST-TCCEEEEEECTTS
T ss_pred             HhCC-CCCEEEEEECCcc
Confidence            4333 4678999999996

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=80.95  E-value=1.6  Score=34.78  Aligned_cols=62  Identities=10%  Similarity=0.034  Sum_probs=35.9

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhcHH----HHhhhhcCCCCCeEEEEe
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERSNV----TDLVSQMDPQGKRTIFVL  145 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans~a----l~lar~~DP~G~RTIGVl  145 (294)
                      ..|.|+|+||...                  ..|+++.+.+|+++-..+.+ +.+...    +...+...+.+...|-|.
T Consensus        54 ~~l~i~Dt~G~~~------------------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~  115 (178)
T 2iwr_A           54 HLVLIREEAGAPD------------------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG  115 (178)
T ss_dssp             EEEEEEECSSSCC------------------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEE
T ss_pred             EEEEEEECCCCch------------------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            4689999999542                  34666777666655433221 111111    122233333567899999


Q ss_pred             ccchh
Q psy8958         146 TKVSQ  150 (294)
Q Consensus       146 TK~D~  150 (294)
                      ||.|+
T Consensus       116 nK~Dl  120 (178)
T 2iwr_A          116 TQDRI  120 (178)
T ss_dssp             ECTTC
T ss_pred             ECccc
Confidence            99995

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=80.84  E-value=1.5  Score=43.30  Aligned_cols=64  Identities=9%  Similarity=0.220  Sum_probs=43.1

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..++|+|+||.....             .+...++...+.+||+|- |+..  ..+-+.+.+++..   +...|-|+||+
T Consensus        51 ~~i~~iDTPGhe~f~-------------~~~~~~~~~aD~aILVVd-a~~g~~~qT~e~l~~~~~~---~vPiIVviNKi  113 (501)
T 1zo1_I           51 GMITFLDTPGHAAFT-------------SMRARGAQATDIVVLVVA-ADDGVMPQTIEAIQHAKAA---QVPVVVAVNKI  113 (501)
T ss_dssp             SCCCEECCCTTTCCT-------------TSBCSSSBSCSSEEEEEE-TTTBSCTTTHHHHHHHHHT---TCCEEEEEECS
T ss_pred             EEEEEEECCCcHHHH-------------HHHHHHHhhCCEEEEEee-cccCccHHHHHHHHHHHhc---CceEEEEEEec
Confidence            479999999964322             344567777787777664 4432  3445566666654   45699999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       114 Dl~  116 (501)
T 1zo1_I          114 DKP  116 (501)
T ss_dssp             SSS
T ss_pred             ccc
Confidence            963

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=80.63  E-value=2  Score=35.42  Aligned_cols=72  Identities=14%  Similarity=0.200  Sum_probs=38.5

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcC---CCCceEEEeccCCCcchh--cHHHHhhhhcCCCCCeEEEEec
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMS---NPNAIILCIQDGSVDAER--SNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~---~p~sIILaV~~a~~D~an--s~al~lar~~DP~G~RTIGVlT  146 (294)
                      .+.++|+||+.....   +....+..+.++..|++   .... ++.|.++......  ..+.+++..   .+...+.|.+
T Consensus        73 ~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~v~n  145 (210)
T 1pui_A           73 GKRLVDLPGYGYAEV---PEEMKRKWQRALGEYLEKRQSLQG-LVVLMDIRHPLKDLDQQMIEWAVD---SNIAVLVLLT  145 (210)
T ss_dssp             TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEE-EEEEEETTSCCCHHHHHHHHHHHH---TTCCEEEEEE
T ss_pred             CEEEEECcCCccccc---CHHHHHHHHHHHHHHHHhhhcccE-EEEEEECCCCCchhHHHHHHHHHH---cCCCeEEEEe
Confidence            689999999864221   12223445566666664   3333 4445555432221  223333333   3566788999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |+|+
T Consensus       146 K~D~  149 (210)
T 1pui_A          146 KADK  149 (210)
T ss_dssp             CGGG
T ss_pred             cccC
Confidence            9995

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=80.54  E-value=2  Score=44.94  Aligned_cols=64  Identities=16%  Similarity=0.252  Sum_probs=41.9

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..+.|+|+||.....             ..+..|++.-+.+||+| +|..-  ..+...++.+..   .+...|.|++|+
T Consensus        98 ~~i~liDTPG~~df~-------------~~~~~~l~~aD~ailVv-Da~~g~~~qt~~~~~~~~~---~~~p~ilviNK~  160 (842)
T 1n0u_A           98 FLINLIDSPGHVDFS-------------SEVTAALRVTDGALVVV-DTIEGVCVQTETVLRQALG---ERIKPVVVINKV  160 (842)
T ss_dssp             EEEEEECCCCCCSSC-------------HHHHHHHHTCSEEEEEE-ETTTBSCHHHHHHHHHHHH---TTCEEEEEEECH
T ss_pred             ceEEEEECcCchhhH-------------HHHHHHHHhCCEEEEEE-eCCCCCCHHHHHHHHHHHH---cCCCeEEEEECC
Confidence            568999999976422             35677888888666655 44432  233333444443   457789999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       161 D~~  163 (842)
T 1n0u_A          161 DRA  163 (842)
T ss_dssp             HHH
T ss_pred             Ccc
Confidence            975

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=80.51  E-value=2.2  Score=39.44  Aligned_cols=73  Identities=15%  Similarity=0.267  Sum_probs=42.3

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHH---HHHHHHhhhhcC-CCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEE
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTR---DLIRQMTQTHMS-NPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFV  144 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~---~~i~~Lv~~Yi~-~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGV  144 (294)
                      .-.++.|||+||.....     ....   ..+...+...+. .|..++| |+.|..   .+++++.++.+.+...-+=.|
T Consensus       190 ~~yD~VIIDTpg~l~~~-----~~l~~eL~~~~~vi~~~~p~~~d~vll-Vl~a~~---~~~~l~~~~~~~~~~~i~GvV  260 (320)
T 1zu4_A          190 QNYDLLLIDTAGRLQNK-----TNLMAELEKMNKIIQQVEKSAPHEVLL-VIDATT---GQNGVIQAEEFSKVADVSGII  260 (320)
T ss_dssp             TTCSEEEEECCCCGGGH-----HHHHHHHHHHHHHHHTTCTTCCSEEEE-EEEGGG---THHHHHHHHHHTTTSCCCEEE
T ss_pred             cCCCEEEEcCCCccccc-----HHHHHHHHHHHHHHhcccCCCCceEEE-EEECCC---cHHHHHHHHHHhhcCCCcEEE
Confidence            35789999999977532     1122   223333443332 3555544 445442   367778888887654334357


Q ss_pred             eccchh
Q psy8958         145 LTKVSQ  150 (294)
Q Consensus       145 lTK~D~  150 (294)
                      +||.|.
T Consensus       261 ltk~d~  266 (320)
T 1zu4_A          261 LTKMDS  266 (320)
T ss_dssp             EECGGG
T ss_pred             EeCCCC
Confidence            899984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	294
d1jwyb_	306	c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc	3e-25
d2akab1	299	c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus n	2e-21

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 99.9 bits (248), Expect = 3e-25
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 4/154 (2%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLT----KESDLVELRKEVERRMMNSVRKGKTV 56
           +TR P+ + L+  P      +       L        D  E+R+E+ R       K K +
Sbjct: 57  VTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGI 116

Query: 57  SNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQ 116
           S + I++ +  P +  + LVDLPGI      D  +D    IR+M   ++   NAII+ + 
Sbjct: 117 SAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVT 176

Query: 117 DGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ 150
             + D   S+   L  ++DP+GKRTI V+TK+  
Sbjct: 177 PANTDLANSDALQLAKEVDPEGKRTIGVITKLDL 210

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 89.5 bits (221), Expect = 2e-21
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 4/150 (2%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           +TR P+ + L       A+F     +    K +D  E+R E+E          K +S   
Sbjct: 59  VTRRPLVLQLVNSTTEYAEFLHCKGK----KFTDFEEVRLEIEAETDRVTGTNKGISPVP 114

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           I++ V  P +  + LVDLPG+      D   D    IR M    ++  N +IL +   + 
Sbjct: 115 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS 174

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQ 150
           D   S+   +  ++DPQG+RTI V+TK+  
Sbjct: 175 DLANSDALKIAKEVDPQGQRTIGVITKLDL 204

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.96
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.96
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.35
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.91
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.54
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.46
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.71
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	91.46
d1okkd2	207	GTPase domain of the signal recognition particle r	91.41
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	91.25
d1ls1a2	207	GTPase domain of the signal sequence recognition p	90.8
d1j8yf2	211	GTPase domain of the signal sequence recognition p	90.72
d2qy9a2	211	GTPase domain of the signal recognition particle r	90.47
d1vmaa2	213	GTPase domain of the signal recognition particle r	90.07
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	88.87
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	87.37
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	86.18
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	85.63
d1nrjb_	209	Signal recognition particle receptor beta-subunit	85.25
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	82.32
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	82.08
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	81.49
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	80.92
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	80.72

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.96  E-value=4.2e-29  Score=227.91  Aligned_cols=208  Identities=27%  Similarity=0.447  Sum_probs=155.9

Q ss_pred             CCcCceEEEEEeCCCcccccccc-cccc---CCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCCceEE
Q psy8958           1 MTRSPVKVTLSEGPYHVAQFKDS-SREF---DLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLV   76 (294)
Q Consensus         1 vTRrPl~L~L~~~p~~~~~f~~~-~~ef---~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~LTLV   76 (294)
                      |||+|+++++.+.+.....+... +.++   ....+.++.++..++...+....+.+..+|.+++.+++.+|.+++|+||
T Consensus        57 ~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii  136 (306)
T d1jwyb_          57 VTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLV  136 (306)
T ss_dssp             ----CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEE
T ss_pred             cccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHHHHHHHhcCCCCcccccceEEEecCCCCCCceEe
Confidence            89999999999887543322111 1111   1245677888999998888877777889999999999999999999999


Q ss_pred             eCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhhhhhhh
Q psy8958          77 DLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIE  156 (294)
Q Consensus        77 DLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~~~~~~  156 (294)
                      ||||+......+++.....++.+|+..||.+++++||+|.+++.|+.++.++++++++||.+.||++|+||+|+.     
T Consensus       137 DtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~~-----  211 (306)
T d1jwyb_         137 DLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLM-----  211 (306)
T ss_dssp             ECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSS-----
T ss_pred             cCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcCCCeEEEEEeccccc-----
Confidence            999999999988888899999999999999999999999999999999999999999999999999999999842     


Q ss_pred             ccccccccccccccCCccccccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhhcCCChHHHHHHHc
Q psy8958         157 KDGSVDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILA  236 (294)
Q Consensus       157 ~~~~v~~~r~~~~~LG~~~d~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~~~~~~~~~~~il~  236 (294)
                                                                                       ++    ..++..+|.
T Consensus       212 -----------------------------------------------------------------~~----~~~~~~~l~  222 (306)
T d1jwyb_         212 -----------------------------------------------------------------DK----GTDAMEVLT  222 (306)
T ss_dssp             -----------------------------------------------------------------CS----SCCCHHHHT
T ss_pred             -----------------------------------------------------------------cc----hhHHHHHHh
Confidence                                                                             00    134567889


Q ss_pred             CCcccCCCCCeEEEEeCCCC--CCCccHHHHHHHHHHHhccChhhhhhh
Q psy8958         237 GKLFPMKALGYFAVVTGRGG--KKDESIQDIKEYEENFFKKSKLFSTKV  283 (294)
Q Consensus       237 ~~~~~L~~lG~~~v~~~~~~--~~~~~~~~~~~~e~~~f~~~~~~~~~~  283 (294)
                      |...++. +||+++.+.+..  ....++.++.+.|++||.++|+|....
T Consensus       223 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~f~~~~~~~~l~  270 (306)
T d1jwyb_         223 GRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIA  270 (306)
T ss_dssp             TSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSG
T ss_pred             CCccccc-CCceeeecCchhhccccCCHHHHHHHHHHHHhCCchhcchH
Confidence            9999998 999999884432  267889999999999999999987543

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=6.5e-28  Score=218.60  Aligned_cols=204  Identities=27%  Similarity=0.419  Sum_probs=173.1

Q ss_pred             CCcCceEEEEEeCCCccccccccccccCCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCCceEEeCCC
Q psy8958           1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPG   80 (294)
Q Consensus         1 vTRrPl~L~L~~~p~~~~~f~~~~~ef~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~LTLVDLPG   80 (294)
                      |||+|+++++.+....+..+....+    ....++.++..++........+..++++++++.|++.+|.+++|+|||+||
T Consensus        59 ~T~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG  134 (299)
T d2akab1          59 VTRRPLVLQLVNSTTEYAEFLHCKG----KKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPG  134 (299)
T ss_dssp             SCSSCEEEEEEECSSCEEEETTSTT----CCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCC
T ss_pred             cccCCEEEEEeccccceeEEEeCCC----CeeCCHHHHHHHHHHHHHHhhCCCcCcCCccEEEEEcCCCCCCeeEEccCC
Confidence            8999999999998776665543322    234567777777777777777778899999999999999999999999999


Q ss_pred             CcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhhhhhhhcccc
Q psy8958          81 IISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGS  160 (294)
Q Consensus        81 i~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~~~~~~~~~~  160 (294)
                      +......+++......+.+|+..|+.+++++||+|.+|+.|+.+++++.+++.+||.+.||+||+||+|...        
T Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk~D~~~--------  206 (299)
T d2akab1         135 MTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMD--------  206 (299)
T ss_dssp             BCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSC--------
T ss_pred             ccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcCCCceeeEEecccccc--------
Confidence            999999999999999999999999999999999999999999999999999999999999999999998530        


Q ss_pred             ccccccccccCCccccccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhhcCCChHHHHHHHcCCcc
Q psy8958         161 VDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF  240 (294)
Q Consensus       161 v~~~r~~~~~LG~~~d~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~~~~~~~~~~~il~~~~~  240 (294)
                                                                                    +    .+++...+.+...
T Consensus       207 --------------------------------------------------------------~----~~~~~~~~~~~~~  220 (299)
T d2akab1         207 --------------------------------------------------------------E----GTDARDVLENKLL  220 (299)
T ss_dssp             --------------------------------------------------------------T----TCCCHHHHTTCSS
T ss_pred             --------------------------------------------------------------c----hhhHHHHHhcccc
Confidence                                                                          0    0223456788999


Q ss_pred             cCCCCCeEEEEeCCCCC--CCccHHHHHHHHHHHhccChhhhhhh
Q psy8958         241 PMKALGYFAVVTGRGGK--KDESIQDIKEYEENFFKKSKLFSTKV  283 (294)
Q Consensus       241 ~L~~lG~~~v~~~~~~~--~~~~~~~~~~~e~~~f~~~~~~~~~~  283 (294)
                      ++. +||+++.+.....  ...++.++++.|++||..+++|+...
T Consensus       221 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~f~~~~~~~~l~  264 (299)
T d2akab1         221 PLR-RGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLA  264 (299)
T ss_dssp             CCT-TCEEECCCCCCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGG
T ss_pred             ccc-CCeeeeecCccccccccCCHHHHHHHHHHHHhcCccccchH
Confidence            998 8999988843322  56788999999999999999988654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.35  E-value=0.015  Score=46.19  Aligned_cols=86  Identities=13%  Similarity=0.184  Sum_probs=54.6

Q ss_pred             cccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchh--cHHHHhhhhc
Q psy8958          57 SNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAER--SNVTDLVSQM  134 (294)
Q Consensus        57 S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~an--s~al~lar~~  134 (294)
                      +.+...-..... -..++++|+||+....     ........+.+..++.+-+ +||.|++++..+..  ....+..++.
T Consensus        40 t~~~~~~~~~~~-~~~~~~~DtpG~~~~~-----~~~~~~~~~~~~~~~~~ad-~il~v~D~~~~~~~~~~~i~~~l~~~  112 (178)
T d1wf3a1          40 TRKRLRGILTEG-RRQIVFVDTPGLHKPM-----DALGEFMDQEVYEALADVN-AVVWVVDLRHPPTPEDELVARALKPL  112 (178)
T ss_dssp             CCSCEEEEEEET-TEEEEEEECCCCCCCC-----SHHHHHHHHHHHHHTSSCS-EEEEEEETTSCCCHHHHHHHHHHGGG
T ss_pred             ccccccceeeee-eeeeeecccccccccc-----cccchhccccccccccccc-ceeeeechhhhhcccccchhhheecc
Confidence            334443333333 3478999999986533     2334556677788888887 45556677654433  3445666666


Q ss_pred             CCCCCeEEEEeccchh
Q psy8958         135 DPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       135 DP~G~RTIGVlTK~D~  150 (294)
                      .+. ...|.|+||+|+
T Consensus       113 ~~~-~piilv~NK~Dl  127 (178)
T d1wf3a1         113 VGK-VPILLVGNKLDA  127 (178)
T ss_dssp             TTT-SCEEEEEECGGG
T ss_pred             ccc-hhhhhhhccccc
Confidence            553 578999999995

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.91  E-value=0.011  Score=46.62  Aligned_cols=89  Identities=16%  Similarity=0.271  Sum_probs=50.2

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCC--ChhHHHHHHHHhhhhcCCCCceEEEeccCCC-----------
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDM--ASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-----------  120 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q--~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-----------  120 (294)
                      .+.+.+++.+..     .+..|+|+||+........  .+.+...+...+..+++....++++| ++..           
T Consensus        31 ~g~T~~~~~~~~-----~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vv-D~~~~~~~~~~~~~~  104 (184)
T d2cxxa1          31 PGVTRKIIEIEW-----KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVV-DGKAAPEIIKRWEKR  104 (184)
T ss_dssp             TTCTTSCEEEEE-----TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEE-ETTHHHHHHHHHHHT
T ss_pred             CCEeeccccccc-----ccceecccCCceeccccccccccccchhhhhhhhhcccccchheeee-eccccchhhhhhhhc
Confidence            344556655543     3578999999754432221  12234444555666677777666655 4431           


Q ss_pred             --cchhcHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958         121 --DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       121 --D~ans~al~lar~~DP~G~RTIGVlTK~D~~  151 (294)
                        -....+.++.+++.   +...|.|+||+|+.
T Consensus       105 ~~~~~d~~~~~~l~~~---~~p~iiv~NK~D~~  134 (184)
T d2cxxa1         105 GEIPIDVEFYQFLREL---DIPTIVAVNKLDKI  134 (184)
T ss_dssp             TCCCHHHHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             cccHHHHHHHHHHHHc---CCCEEEEEeeeehh
Confidence              11112334445553   56789999999953

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.54  E-value=0.02  Score=52.52  Aligned_cols=78  Identities=24%  Similarity=0.348  Sum_probs=46.5

Q ss_pred             EEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEE
Q psy8958          64 SVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIF  143 (294)
Q Consensus        64 eI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIG  143 (294)
                      ....|+.++++|+|+||+......     ..+....+    .-..-.++|.|++..  +..++ .++++.+-..|...+.
T Consensus       100 ~~~~~~~~~~~l~DtPG~~~~~~~-----~~~~~~~~----~~~~~d~~l~~~~~~--~~~~d-~~l~~~l~~~~k~~~~  167 (400)
T d1tq4a_         100 PYKHPNIPNVVFWDLPGIGSTNFP-----PDTYLEKM----KFYEYDFFIIISATR--FKKND-IDIAKAISMMKKEFYF  167 (400)
T ss_dssp             EEECSSCTTEEEEECCCGGGSSCC-----HHHHHHHT----TGGGCSEEEEEESSC--CCHHH-HHHHHHHHHTTCEEEE
T ss_pred             eeeccCCCeEEEEeCCCccccccc-----HHHHHHHh----hhhcceEEEEecCCC--CCHHH-HHHHHHHHHcCCCEEE
Confidence            455788999999999998654321     11222221    111234666666543  43333 3444444445789999


Q ss_pred             Eeccchhhhh
Q psy8958         144 VLTKVSQQLI  153 (294)
Q Consensus       144 VlTK~D~~~~  153 (294)
                      |+||+|....
T Consensus       168 V~nK~D~~~~  177 (400)
T d1tq4a_         168 VRTKVDSDIT  177 (400)
T ss_dssp             EECCHHHHHH
T ss_pred             EEeCcccccc
Confidence            9999997543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.46  E-value=0.057  Score=46.17  Aligned_cols=91  Identities=11%  Similarity=0.135  Sum_probs=48.5

Q ss_pred             ccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhh
Q psy8958          56 VSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQ  133 (294)
Q Consensus        56 ~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~  133 (294)
                      -+.++........ -..+++||+||+......  .+.....+......  ..++.|++++......+  ....+++..++
T Consensus        66 ~T~~~~~~~~~~~-g~~i~viDTPGl~~~~~~--~~~~~~~i~~~~~~--~~~~~il~v~~~~~~r~~~~~~~~l~~l~~  140 (257)
T d1h65a_          66 EGPRPVMVSRSRA-GFTLNIIDTPGLIEGGYI--NDMALNIIKSFLLD--KTIDVLLYVDRLDAYRVDNLDKLVAKAITD  140 (257)
T ss_dssp             CCSSCEEEEEEET-TEEEEEEECCCSEETTEE--CHHHHHHHHHHTTT--CEECEEEEEEESSCCCCCHHHHHHHHHHHH
T ss_pred             cceeEEEEEEEec-cEEEEEEeeecccCCcch--HHHHHHHHHHHHhc--CCCCeEEEEEECCCCCCCHHHHHHHHHHHH
Confidence            3444554444432 356999999999875432  23333333333221  23555555544433333  34445544443


Q ss_pred             -cCCC-CCeEEEEeccchhh
Q psy8958         134 -MDPQ-GKRTIFVLTKVSQQ  151 (294)
Q Consensus       134 -~DP~-G~RTIGVlTK~D~~  151 (294)
                       +.+. ..++|.|+||.|..
T Consensus       141 ~fg~~~~~~~ivv~t~~D~~  160 (257)
T d1h65a_         141 SFGKGIWNKAIVALTHAQFS  160 (257)
T ss_dssp             HHCGGGGGGEEEEEECCSCC
T ss_pred             HcchhhhhCEEEEEECcccC
Confidence             3222 46899999999953

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.71  E-value=0.19  Score=41.34  Aligned_cols=78  Identities=13%  Similarity=0.169  Sum_probs=49.7

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc--HHHHhhh
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS--NVTDLVS  132 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans--~al~lar  132 (294)
                      ++|-+.-.+.+...+ ..++|||+||...        ...+.++.+     +.-+ +.|.|++|...+..|  +.+.+|+
T Consensus        52 giTi~~~~~~~~~~~-~~i~iiDtPGh~d--------f~~~~~~~~-----~~aD-~avlVvda~~Gv~~qt~~~~~~~~  116 (204)
T d2c78a3          52 GITINTAHVEYETAK-RHYSHVDCPGHAD--------YIKNMITGA-----AQMD-GAILVVSAADGPMPQTREHILLAR  116 (204)
T ss_dssp             TCCCSCEEEEEECSS-CEEEEEECCCSGG--------GHHHHHHHH-----TTCS-SEEEEEETTTCCCHHHHHHHHHHH
T ss_pred             CeEEEeeEEEEEeCC-eEEEEEeCCCchh--------hHHHHHHHH-----HHCC-EEEEEEECCCCCcHHHHHHHHHHH
Confidence            566666666666655 4789999999553        233333333     3344 455566666556554  6788888


Q ss_pred             hcCCCCCe-EEEEeccchh
Q psy8958         133 QMDPQGKR-TIFVLTKVSQ  150 (294)
Q Consensus       133 ~~DP~G~R-TIGVlTK~D~  150 (294)
                      ..   |-+ -|.+++|.|+
T Consensus       117 ~~---gi~~iiv~iNK~D~  132 (204)
T d2c78a3         117 QV---GVPYIVVFMNKVDM  132 (204)
T ss_dssp             HT---TCCCEEEEEECGGG
T ss_pred             Hc---CCCeEEEEEEeccc
Confidence            87   554 4566999995

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.46  E-value=0.1  Score=43.34  Aligned_cols=64  Identities=11%  Similarity=0.192  Sum_probs=39.9

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      ..++|||+||......             .+...+.... +++.|++|...+  .+...++++++.   +.-.|-|+||+
T Consensus        70 ~~~~~iDtPGh~~f~~-------------~~~~~~~~~D-~~ilVvda~~g~~~~~~~~~~~~~~~---~~p~iivlNK~  132 (227)
T d1g7sa4          70 PGLFFIDTPGHEAFTT-------------LRKRGGALAD-LAILIVDINEGFKPQTQEALNILRMY---RTPFVVAANKI  132 (227)
T ss_dssp             CEEEEECCCTTSCCTT-------------SBCSSSBSCS-EEEEEEETTTCCCHHHHHHHHHHHHT---TCCEEEEEECG
T ss_pred             cccccccccceecccc-------------cchhcccccc-eEEEEEecccCcccchhHHHHHhhcC---CCeEEEEEECc
Confidence            3479999999533221             1223444455 555666666433  345556666664   67799999999


Q ss_pred             hhh
Q psy8958         149 SQQ  151 (294)
Q Consensus       149 D~~  151 (294)
                      |+.
T Consensus       133 D~~  135 (227)
T d1g7sa4         133 DRI  135 (227)
T ss_dssp             GGS
T ss_pred             cCC
Confidence            964

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=91.41  E-value=0.087  Score=44.32  Aligned_cols=70  Identities=13%  Similarity=0.257  Sum_probs=40.7

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHH---hhhhc-CCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEec
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQM---TQTHM-SNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~L---v~~Yi-~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlT  146 (294)
                      -++.|||+||.....     .+..++.+++   +.... ..|.-++|++.+....-+..++.+.-+.++++|-    |+|
T Consensus        89 ~d~ilIDTaGr~~~d-----~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~l----I~T  159 (207)
T d1okkd2          89 YDLLFVDTAGRLHTK-----HNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGV----IVT  159 (207)
T ss_dssp             CSEEEECCCCCCTTC-----HHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEE----EEE
T ss_pred             CCEEEcCccccchhh-----HHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccCCceE----EEe
Confidence            378999999965422     2333333333   33332 2455555555444444445555566666777754    999


Q ss_pred             cch
Q psy8958         147 KVS  149 (294)
Q Consensus       147 K~D  149 (294)
                      |.|
T Consensus       160 KlD  162 (207)
T d1okkd2         160 KLD  162 (207)
T ss_dssp             CTT
T ss_pred             ccC
Confidence            998

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=91.25  E-value=0.61  Score=35.17  Aligned_cols=90  Identities=10%  Similarity=0.244  Sum_probs=52.0

Q ss_pred             cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch-hcHH-HHhhh
Q psy8958          55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE-RSNV-TDLVS  132 (294)
Q Consensus        55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a-ns~a-l~lar  132 (294)
                      +...+.+...+...+ ....++|+||+.....     ............++.....+++++-..+.+.. .+.. .+..+
T Consensus        34 ~~~~~~~~~~~~~~~-~~~~~~d~~g~~~~~~-----~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  107 (161)
T d2gj8a1          34 GTTRDVLREHIHIDG-MPLHIIDTAGLREASD-----EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIA  107 (161)
T ss_dssp             TCCCSCEEEEEEETT-EEEEEEECCCCSCCSS-----HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHH
T ss_pred             ccccceEeeeeeccC-ceeeeccccccccccc-----cchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhh
Confidence            344555655555554 4688999999986442     22233334455666666656555544443322 2222 23444


Q ss_pred             hcCCCCCeEEEEeccchhh
Q psy8958         133 QMDPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       133 ~~DP~G~RTIGVlTK~D~~  151 (294)
                      .... +...|-|+||+|+.
T Consensus       108 ~~~~-~~~iilv~NK~Dl~  125 (161)
T d2gj8a1         108 RLPA-KLPITVVRNKADIT  125 (161)
T ss_dssp             HSCT-TCCEEEEEECHHHH
T ss_pred             hccc-ccceeeccchhhhh
Confidence            4543 56788999999964

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=90.80  E-value=0.2  Score=41.86  Aligned_cols=69  Identities=17%  Similarity=0.326  Sum_probs=37.9

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~  150 (294)
                      -++.|||+||.....     .....+..++.+  +.+|.-++|++.+...+-+-..+....+.++.+|    -|+||.|-
T Consensus        93 ~d~vlIDTaGr~~~d-----~~~~~el~~~~~--~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~~~~----~I~TKlDe  161 (207)
T d1ls1a2          93 RDLILVDTAGRLQID-----EPLMGELARLKE--VLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTG----LVLTKLDG  161 (207)
T ss_dssp             CCEEEEECCCCSSCC-----HHHHHHHHHHHH--HHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCCCE----EEEECGGG
T ss_pred             Ccceeecccccchhh-----hhhHHHHHHHHh--hcCCceEEEEeccccchhHHHHHHHHHhhCCCCe----eEEeecCc
Confidence            478999999976532     344455555433  3345544444444333222233333334455554    69999983

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=90.72  E-value=0.22  Score=41.89  Aligned_cols=70  Identities=11%  Similarity=0.241  Sum_probs=35.4

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc-HHHHhhhhcCCCCCeEEEEeccch
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS-NVTDLVSQMDPQGKRTIFVLTKVS  149 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans-~al~lar~~DP~G~RTIGVlTK~D  149 (294)
                      -++.|||+||....   ++.....+++.++... + +|.. ++.|++|+...... .+...-+..+++|    .|+||.|
T Consensus        95 ~d~IlIDTaGr~~~---~~~~~~~~el~~~~~~-~-~~~~-~~LVl~a~~~~~~~~~~~~~~~~~~~~~----lI~TKlD  164 (211)
T d1j8yf2          95 MEIIIVDTAGRHGY---GEEAALLEEMKNIYEA-I-KPDE-VTLVIDASIGQKAYDLASKFNQASKIGT----IIITKMD  164 (211)
T ss_dssp             CSEEEEECCCSCCT---TCHHHHHHHHHHHHHH-H-CCSE-EEEEEEGGGGGGHHHHHHHHHHHCTTEE----EEEECTT
T ss_pred             CceEEEecCCcCcc---chhhHHHHHHHHHHhh-c-CCce-EEEEEecccCcchHHHHhhhhcccCcce----EEEeccc
Confidence            47999999997432   1212223444444433 2 3444 44555555443322 2223333444432    5799998


Q ss_pred             h
Q psy8958         150 Q  150 (294)
Q Consensus       150 ~  150 (294)
                      -
T Consensus       165 e  165 (211)
T d1j8yf2         165 G  165 (211)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=90.47  E-value=0.18  Score=42.50  Aligned_cols=71  Identities=15%  Similarity=0.259  Sum_probs=40.3

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhh---hc-CCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEec
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQT---HM-SNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLT  146 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~---Yi-~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlT  146 (294)
                      .++.|||+||..+..     .+..++.+++.+-   -- ..|..++|++.+....-+-.++...-+.+.++|-    |+|
T Consensus        92 ~d~ilIDTaGr~~~d-----~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~l----IlT  162 (211)
T d2qy9a2          92 IDVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGI----TLT  162 (211)
T ss_dssp             CSEEEECCCCCGGGH-----HHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHSCCCEE----EEE
T ss_pred             CCEEEeccCCCcccc-----HHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhccCCceE----EEe
Confidence            479999999976432     3444555544332   11 1355555544443333334445555556666654    999


Q ss_pred             cchh
Q psy8958         147 KVSQ  150 (294)
Q Consensus       147 K~D~  150 (294)
                      |.|-
T Consensus       163 KlDe  166 (211)
T d2qy9a2         163 KLDG  166 (211)
T ss_dssp             CCTT
T ss_pred             ecCC
Confidence            9983

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=90.07  E-value=0.17  Score=42.70  Aligned_cols=70  Identities=17%  Similarity=0.380  Sum_probs=39.1

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHH---hhhhcCC-CCceEEEeccCCCcch-hcHHHHhhhhcCCCCCeEEEEe
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQM---TQTHMSN-PNAIILCIQDGSVDAE-RSNVTDLVSQMDPQGKRTIFVL  145 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~L---v~~Yi~~-p~sIILaV~~a~~D~a-ns~al~lar~~DP~G~RTIGVl  145 (294)
                      .++.|||+||..+..     .+..++.+.+   +...... |.- ++.|++|+.+.. -.++.+.-+.++++|    -|+
T Consensus        94 ~d~ilIDTaGr~~~d-----~~~~~el~~~~~~~~~~~~~~p~~-~~LVl~a~~~~~~~~~~~~~~~~~~~~~----lI~  163 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTK-----KNLMEELRKVHRVVKKKIPDAPHE-TLLVIDATTGQNGLVQAKIFKEAVNVTG----IIL  163 (213)
T ss_dssp             CSEEEEEECCCCSCH-----HHHHHHHHHHHHHGGGTCTTCCSE-EEEEEEGGGHHHHHHHHHHHHHHSCCCE----EEE
T ss_pred             CCEEEEeccccccch-----HHHHHHHHHHHhhhhhccccccce-eEEeeccccCcchhhhhhhhccccCCce----EEE
Confidence            479999999965422     3344444444   3333333 444 455667665433 233334445555554    499


Q ss_pred             ccchh
Q psy8958         146 TKVSQ  150 (294)
Q Consensus       146 TK~D~  150 (294)
                      ||.|-
T Consensus       164 TKlDe  168 (213)
T d1vmaa2         164 TKLDG  168 (213)
T ss_dssp             ECGGG
T ss_pred             ecccC
Confidence            99984

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=88.87  E-value=0.23  Score=38.09  Aligned_cols=67  Identities=10%  Similarity=0.200  Sum_probs=45.5

Q ss_pred             CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc---hhcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA---ERSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~---ans~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ..+.++|+||.             +..+.+...|+.....+++++-..+...   +.....++.+.....+.-.|.|.||
T Consensus        46 ~~~~~~D~~G~-------------~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK  112 (165)
T d1ksha_          46 FKLNIWDVGGQ-------------KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANK  112 (165)
T ss_dssp             EEEEEEEECCS-------------HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred             cceeeeecCcc-------------hhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEec
Confidence            57999999992             3456778889998887777775544311   1112234445555677889999999


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       113 ~Dl  115 (165)
T d1ksha_         113 QDL  115 (165)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            995

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=87.37  E-value=0.5  Score=38.14  Aligned_cols=63  Identities=17%  Similarity=0.162  Sum_probs=39.6

Q ss_pred             CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc---hhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958          72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA---ERSNVTDLVSQMDPQGKRTIFVLTKV  148 (294)
Q Consensus        72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~---ans~al~lar~~DP~G~RTIGVlTK~  148 (294)
                      .+++||+||-.            +-+++|+.. +.... +.|.|++|...+   .+.+.+.+++...-  .+.|-+++|+
T Consensus        87 ~~~iiD~PGH~------------df~~~~~~~-~~~ad-~ailvVda~~gi~~~~t~e~~~~~~~~~i--~~iIV~vNK~  150 (205)
T d2qn6a3          87 RISFIDAPGHE------------VLMATMLSG-AALMD-GAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNKV  150 (205)
T ss_dssp             EEEEEECSCHH------------HHHHHHHHT-SSCCS-EEEEEEETTSCSSCHHHHHHHHHHHHTTC--CCEEEEEECG
T ss_pred             EEEEeccchHH------------HHHhhhhcc-eeccc-cccccccccccccchhHHHHHHHHHHcCC--ceeeeccccC
Confidence            48999999943            344455444 33444 445566777665   23457777777632  3567779999


Q ss_pred             hh
Q psy8958         149 SQ  150 (294)
Q Consensus       149 D~  150 (294)
                      |+
T Consensus       151 Dl  152 (205)
T d2qn6a3         151 DV  152 (205)
T ss_dssp             GG
T ss_pred             CC
Confidence            96

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=86.18  E-value=0.15  Score=39.98  Aligned_cols=80  Identities=19%  Similarity=0.279  Sum_probs=41.0

Q ss_pred             EeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc----HHH---HhhhhcCCC
Q psy8958          65 VKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS----NVT---DLVSQMDPQ  137 (294)
Q Consensus        65 I~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans----~al---~lar~~DP~  137 (294)
                      ...++.-.++++|+||+......++.  ..   +... +++.....++.+|..+..+....    ...   ..+......
T Consensus        43 ~~~~~~~~~~~~DtpG~~~~~~~~~~--~~---~~~l-~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (185)
T d1lnza2          43 VETDDGRSFVMADLPGLIEGAHQGVG--LG---HQFL-RHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLT  116 (185)
T ss_dssp             EECSSSCEEEEEEHHHHHHHTTCTTT--TH---HHHH-HHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTT
T ss_pred             eEecCCcEEEEecCCCcccCchHHHH--HH---HHHH-HHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhcc
Confidence            44455567899999999876554321  11   1222 23333444555554444332221    111   122222223


Q ss_pred             CCeEEEEeccchh
Q psy8958         138 GKRTIFVLTKVSQ  150 (294)
Q Consensus       138 G~RTIGVlTK~D~  150 (294)
                      +.-.|.|++|+|+
T Consensus       117 ~kp~ivv~NK~Dl  129 (185)
T d1lnza2         117 ERPQIIVANKMDM  129 (185)
T ss_dssp             TSCBCBEEECTTS
T ss_pred             CCcchhhccccch
Confidence            4457999999995

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=85.63  E-value=0.62  Score=36.16  Aligned_cols=78  Identities=21%  Similarity=0.319  Sum_probs=39.0

Q ss_pred             CCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhcHH-HHhhhhcC--CCCCeEE
Q psy8958          67 GPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERSNV-TDLVSQMD--PQGKRTI  142 (294)
Q Consensus        67 gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans~a-l~lar~~D--P~G~RTI  142 (294)
                      ...-..++++|+||+...+..+..     ...+ ...++..-. +++.++.+... ...... .......+  -.+...|
T Consensus        45 ~~~~~~~~~~DtpG~~~~~~~~~~-----~~~~-~l~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  117 (180)
T d1udxa2          45 VSEEERFTLADIPGIIEGASEGKG-----LGLE-FLRHIARTR-VLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSL  117 (180)
T ss_dssp             CSSSCEEEEEECCCCCCCGGGSCC-----SCHH-HHHHHTSSS-EEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEE
T ss_pred             ecCCCeEEEcCCCeeecCchHHHH-----HHHH-HHHHHHhhh-hhhhhcccccccccchhhhhhhhhccccccchhhhh
Confidence            334456999999999875543321     1112 223444444 44444444332 221111 11111221  1234689


Q ss_pred             EEeccchhh
Q psy8958         143 FVLTKVSQQ  151 (294)
Q Consensus       143 GVlTK~D~~  151 (294)
                      .|+||+|+.
T Consensus       118 iv~NK~D~~  126 (180)
T d1udxa2         118 VALNKVDLL  126 (180)
T ss_dssp             EEEECCTTS
T ss_pred             hhhhhhhhh
Confidence            999999963

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.25  E-value=0.99  Score=35.28  Aligned_cols=72  Identities=14%  Similarity=0.231  Sum_probs=46.7

Q ss_pred             CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc--------HHHHhhhhcCCCCCe
Q psy8958          69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS--------NVTDLVSQMDPQGKR  140 (294)
Q Consensus        69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans--------~al~lar~~DP~G~R  140 (294)
                      +-..++++|+||.-...         .........+......+++.|-..+ +....        +.+.+.+...+.+.-
T Consensus        44 ~~~~~~l~D~~g~~~~~---------~~~~~~~~~~~~~~~~~i~~vd~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~p  113 (209)
T d1nrjb_          44 DGSGVTLVDFPGHVKLR---------YKLSDYLKTRAKFVKGLIFMVDSTV-DPKKLTTTAEFLVDILSITESSCENGID  113 (209)
T ss_dssp             GGSSCEEEECCCCGGGT---------HHHHHHHHHHGGGEEEEEEEEETTS-CTTCCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             CCeEEEEEecccccchh---------hHHHHHHHHHhhhccccceEEEEec-ccccHHHHHHHHHHHHHHHHHHHhccCC
Confidence            34578999999955322         3445555566666666666555543 33221        234566777888888


Q ss_pred             EEEEeccchh
Q psy8958         141 TIFVLTKVSQ  150 (294)
Q Consensus       141 TIGVlTK~D~  150 (294)
                      .|-|++|+|+
T Consensus       114 iiiv~NK~D~  123 (209)
T d1nrjb_         114 ILIACNKSEL  123 (209)
T ss_dssp             EEEEEECTTS
T ss_pred             eEEEEEeecc
Confidence            9999999995

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=82.32  E-value=0.81  Score=35.92  Aligned_cols=86  Identities=15%  Similarity=0.217  Sum_probs=46.6

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhc---CCCCceEEEeccCCCcchh--cHHH
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHM---SNPNAIILCIQDGSVDAER--SNVT  128 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi---~~p~sIILaV~~a~~D~an--s~al  128 (294)
                      .+.+...+...+.    ..+.++|.||+......   .........++..++   ..-. +++.|+++...+..  ...+
T Consensus        56 ~~~t~~~~~~~~~----~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~vi~viD~~~~~~~~~~~~~  127 (195)
T d1svia_          56 PGKTQTLNFYIIN----DELHFVDVPGYGFAKVS---KSEREAWGRMIETYITTREELK-AVVQIVDLRHAPSNDDVQMY  127 (195)
T ss_dssp             ----CCEEEEEET----TTEEEEECCCBCCCSSC---HHHHHHHHHHHHHHHHHCTTEE-EEEEEEETTSCCCHHHHHHH
T ss_pred             cceeeeccccccc----ccceEEEEEeecccccc---ccccchhhhHHhhhhccccchh-hhhhhhhccccccccccccc
Confidence            3344454544443    46789999998665443   222333333333333   3333 45566677654432  3344


Q ss_pred             HhhhhcCCCCCeEEEEeccchh
Q psy8958         129 DLVSQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       129 ~lar~~DP~G~RTIGVlTK~D~  150 (294)
                      ++++..   +...|.|+||+|+
T Consensus       128 ~~l~~~---~~piivv~NK~D~  146 (195)
T d1svia_         128 EFLKYY---GIPVIVIATKADK  146 (195)
T ss_dssp             HHHHHT---TCCEEEEEECGGG
T ss_pred             cccccc---cCcceechhhccc
Confidence            555554   5669999999995

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=82.08  E-value=1.3  Score=33.89  Aligned_cols=86  Identities=16%  Similarity=0.288  Sum_probs=48.5

Q ss_pred             cccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhhhhc
Q psy8958          57 SNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLVSQM  134 (294)
Q Consensus        57 S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~lar~~  134 (294)
                      +...+.-.+... ...+.+.|.||+...+.........    ..+..++..-. +++.+.+++..+.  ....+++.++.
T Consensus        35 t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~----~~~~~~~~~ad-~i~~~~~~~~~~~~~~~~~~~~l~~~  108 (171)
T d1mkya1          35 TRDPVQDTVEWY-GKTFKLVDTCGVFDNPQDIISQKMK----EVTLNMIREAD-LVLFVVDGKRGITKEDESLADFLRKS  108 (171)
T ss_dssp             --CCSEEEEEET-TEEEEEEECTTTTSSGGGCCCHHHH----HHHHHHHTTCS-EEEEEEETTTCCCHHHHHHHHHHHHH
T ss_pred             eecccccccccc-ccccccccccceeeeeccccccccc----cccccccccCc-EEEEeecccccccccccccccccccc
Confidence            333444333332 3347889999998877554443333    33445555555 4455555554333  33445666665


Q ss_pred             CCCCCeEEEEeccchhh
Q psy8958         135 DPQGKRTIFVLTKVSQQ  151 (294)
Q Consensus       135 DP~G~RTIGVlTK~D~~  151 (294)
                      +.   =.|.|++|.|+.
T Consensus       109 ~~---pviiv~NK~Dl~  122 (171)
T d1mkya1         109 TV---DTILVANKAENL  122 (171)
T ss_dssp             TC---CEEEEEESCCSH
T ss_pred             cc---cccccchhhhhh
Confidence            43   379999999964

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=81.49  E-value=1.5  Score=37.92  Aligned_cols=77  Identities=19%  Similarity=0.277  Sum_probs=48.7

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCC--CcchhcHHHHhh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGS--VDAERSNVTDLV  131 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~--~D~ans~al~la  131 (294)
                      -+++.....++-.+.   .++|+|+||.......        ....|     +--.+ .+.|++|.  +...+..+++.|
T Consensus        57 ~si~~~~~~~~~~~~---~~n~iDtPG~~dF~~e--------~~~~l-----~~~D~-avlVvda~~Gv~~~T~~~w~~a  119 (276)
T d2bv3a2          57 ITITAAVTTCFWKDH---RINIIDAPGHVDFTIE--------VERSM-----RVLDG-AIVVFDSSQGVEPQSETVWRQA  119 (276)
T ss_dssp             CCCCCSEEEEEETTE---EEEEECCCSSSSCSTT--------HHHHH-----HHCCE-EEEEEETTTSSCHHHHHHHHHH
T ss_pred             CccccceeeeccCCe---EEEEecCCchhhhHHH--------HHHHH-----Hhhhh-eEEeccccCCcchhHHHHHHHH
Confidence            345566666666553   5899999998865532        12222     11222 33344444  466677788888


Q ss_pred             hhcCCCCCeEEEEeccchh
Q psy8958         132 SQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       132 r~~DP~G~RTIGVlTK~D~  150 (294)
                      ++.   +-=.|.+|+|.|.
T Consensus       120 ~~~---~lP~i~fINKmDr  135 (276)
T d2bv3a2         120 EKY---KVPRIAFANKMDK  135 (276)
T ss_dssp             HTT---TCCEEEEEECTTS
T ss_pred             HHc---CCCEEEEEecccc
Confidence            876   5668999999995

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=80.92  E-value=2.9  Score=33.78  Aligned_cols=80  Identities=10%  Similarity=0.152  Sum_probs=49.9

Q ss_pred             ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhh
Q psy8958          54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLV  131 (294)
Q Consensus        54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~la  131 (294)
                      .+++-+.-.+....++ -..+++|+||..            +.+++|+.. +..-. +.|.|++|..-+.  +.+.+.+|
T Consensus        50 rgiTi~~~~~~~~~~~-~~~~~iDtPGh~------------~f~~~~~~~-~~~aD-~allVVda~~G~~~QT~~~~~~a  114 (196)
T d1d2ea3          50 RGITINAAHVEYSTAA-RHYAHTDCPGHA------------DYVKNMITG-TAPLD-GCILVVAANDGPMPQTREHLLLA  114 (196)
T ss_dssp             TTEEEECEEEEEECSS-CEEEEEECSSHH------------HHHHHHHHT-SSCCS-EEEEEEETTTCSCHHHHHHHHHH
T ss_pred             CCccCCcceEEEEece-eeEEeecCcchH------------HHHHHHHHH-HhhcC-eEEEEEEcCCCCchhHHHHHHHH
Confidence            4566665556665554 579999999933            344555432 23344 5566666665554  44567777


Q ss_pred             hhcCCCCCeEEEEeccchh
Q psy8958         132 SQMDPQGKRTIFVLTKVSQ  150 (294)
Q Consensus       132 r~~DP~G~RTIGVlTK~D~  150 (294)
                      ..+.-  ..-|.+++|.|+
T Consensus       115 ~~~~~--~~iIv~iNK~D~  131 (196)
T d1d2ea3         115 RQIGV--EHVVVYVNKADA  131 (196)
T ss_dssp             HHTTC--CCEEEEEECGGG
T ss_pred             HHhcC--CcEEEEEecccc
Confidence            77632  456778999995

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.72  E-value=0.9  Score=34.92  Aligned_cols=68  Identities=12%  Similarity=0.088  Sum_probs=45.4

Q ss_pred             CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhhhhcCCCCCeEEEEecc
Q psy8958          70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLVSQMDPQGKRTIFVLTK  147 (294)
Q Consensus        70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~lar~~DP~G~RTIGVlTK  147 (294)
                      ...|.|.|+||--             ....|...|++...++||++-..+.+--  ....+...+........-+.|.+|
T Consensus        53 ~~~l~~wDt~G~e-------------~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK  119 (169)
T d3raba_          53 RIKLQIWDTAGQE-------------RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNK  119 (169)
T ss_dssp             EEEEEEEEECCSG-------------GGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEEC
T ss_pred             eEEEEEEECCCch-------------hhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEee
Confidence            3569999999921             1246778899999988887755443211  122345667777666666777899


Q ss_pred             chh
Q psy8958         148 VSQ  150 (294)
Q Consensus       148 ~D~  150 (294)
                      .|+
T Consensus       120 ~D~  122 (169)
T d3raba_         120 CDM  122 (169)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            995