Psyllid ID: psy8965

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MNSATNTAGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccEEEEEcccccEEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEEEEcccEEEEEEccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEccccccccccHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccEEEEEcccccEEEEEEcccccccccHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEcHHHHHHcc
Coil and Loop (DISEMBL)
mnsatntagisisiiqpktsildkpintkvkhdISINLYALLFSELVQYCQnkslsvpeFQSKLHEVGQSIGAKlidinfyrekngkREIKLLNILQFVKINLWKnifgkecdklerandderTYYLIEQESLVNKFisvpkdkgslncAIFVAGIVEAVLNncgfkstvTAHWHKGTTYMIQFDEQVIARDK
Flexible Loop (DISEMBL)
mnsatntagisisiiqpktsildkPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK
Low Complexity Region (SEG)
MNSATNTAGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK
Disordered region (IsUnstruct)
*********ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVI****
Disordered Region (DISOPRED)
*************************************LYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISV***KGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIAR**
Disordered Region (DISEMBL)
********GISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK
Disordered Region (DISPRO)
********************I****INTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVI*R**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSATNTAGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
Q5F359	188	Trafficking protein parti	yes	N/A	0.906	0.930	0.556	5e-57
Q8IUR0	188	Trafficking protein parti	yes	N/A	0.906	0.930	0.545	3e-56
Q9CQA1	188	Trafficking protein parti	yes	N/A	0.906	0.930	0.539	7e-56
Q2NL13	188	Trafficking protein parti	yes	N/A	0.906	0.930	0.534	1e-55
Q54YG5	186	Trafficking protein parti	yes	N/A	0.886	0.919	0.430	1e-36
Q9P7N9	209	Transport protein particl	yes	N/A	0.901	0.832	0.361	2e-32
P15847	184	Trafficking protein parti	yes	N/A	0.901	0.945	0.407	5e-28
Q7KQM2	184	Trafficking protein parti	yes	N/A	0.901	0.945	0.407	5e-28
Q03337	283	Trafficking protein parti	yes	N/A	0.559	0.381	0.338	7e-13
Q8SU25	155	Putative trafficking prot	yes	N/A	0.694	0.864	0.251	1e-09

>sp|Q5F359|TPPC5_CHICK Trafficking protein particle complex subunit 5 OS=Gallus gallus GN=TRAPPC5 PE=2 SV=1

 Score =  220 bits (560), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 98/176 (55%), Positives = 136/176 (77%), Gaps = 1/176 (0%)

Query: 18  KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 77
           K+ +L++P+  + + ++S++ +ALLF ELVQYCQ +  SV E QSKL ++G  +G +L+D
Sbjct: 9   KSPLLERPLG-RPRGEVSLSAFALLFCELVQYCQRRVYSVAELQSKLAQLGHQVGLRLLD 67

Query: 78  INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 137
               RE+ G+RE K+L++L FVK  +W+ +FGKE DKLE+ANDD++TYY+IE+E LVN F
Sbjct: 68  PLVSRERGGRRETKVLSVLLFVKGPVWRALFGKEADKLEQANDDDKTYYVIEREPLVNTF 127

Query: 138 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
           ISVP++  +LNCA F AG+VEAVL   GF + VTAHWHKGTT MI+F+E VIARDK
Sbjct: 128 ISVPRENSTLNCAAFTAGLVEAVLGASGFPAKVTAHWHKGTTLMIKFEEGVIARDK 183

May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Gallus gallus (taxid: 9031)

>sp|Q8IUR0|TPPC5_HUMAN Trafficking protein particle complex subunit 5 OS=Homo sapiens GN=TRAPPC5 PE=1 SV=1

 Score =  217 bits (553), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 96/176 (54%), Positives = 136/176 (77%), Gaps = 1/176 (0%)

Query: 18  KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 77
           K+++L++ +  + + ++S++ +ALLFSELVQ+CQ++  SV E QS+L  +G+ +GA+++D
Sbjct: 9   KSALLERAL-ARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQVGARVLD 67

Query: 78  INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 137
               REK  +RE K+L  L FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +
Sbjct: 68  ALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTY 127

Query: 138 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
           ISVPK+  +LNCA F AGIVEAVL + GF + VTAHWHKGTT MI+F+E VIARD+
Sbjct: 128 ISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDR 183

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|Q9CQA1|TPPC5_MOUSE Trafficking protein particle complex subunit 5 OS=Mus musculus GN=Trappc5 PE=1 SV=1

 Score =  216 bits (550), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 95/176 (53%), Positives = 136/176 (77%), Gaps = 1/176 (0%)

Query: 18  KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 77
           K+++L++ +  + + ++S++ +ALLFSELVQ+CQ++  SV E Q++L  +G+ +GA+++D
Sbjct: 9   KSALLERAL-VRPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLD 67

Query: 78  INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 137
               REK  +RE K+L  L FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +
Sbjct: 68  ALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTY 127

Query: 138 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
           ISVPK+  +LNCA F AGIVEAVL + GF + VTAHWHKGTT MI+F+E VIARD+
Sbjct: 128 ISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDR 183

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|Q2NL13|TPPC5_BOVIN Trafficking protein particle complex subunit 5 OS=Bos taurus GN=TRAPPC5 PE=2 SV=1

 Score =  215 bits (548), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 94/176 (53%), Positives = 136/176 (77%), Gaps = 1/176 (0%)

Query: 18  KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 77
           K+++L++ +  + + ++S++ +ALLFSELVQ+CQ++  +V E Q++L  +G+ +GA+++D
Sbjct: 9   KSALLERAL-ARPRTEVSLSAFALLFSELVQHCQSRVFTVAELQARLAALGRQVGARVLD 67

Query: 78  INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 137
               REK  +RE K+L  L FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +
Sbjct: 68  ALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTY 127

Query: 138 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
           ISVPK+  +LNCA F AGIVEAVL + GF + VTAHWHKGTT MI+F+E VIARD+
Sbjct: 128 ISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDR 183

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Bos taurus (taxid: 9913)

>sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subunit 5 OS=Dictyostelium discoideum GN=trappc5 PE=3 SV=1

 Score =  152 bits (385), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 118/179 (65%), Gaps = 8/179 (4%)

Query: 21  ILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINF 80
           I+D+P+ +K K +I+I+ +A LFSE++QYCQ++  +  E + KL ++G SIG +L+++  
Sbjct: 8   IVDRPL-SKGKGEINISSFAFLFSEMIQYCQDRIKAGHELEKKLSDMGYSIGPRLLELLC 66

Query: 81  YREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISV 140
            REKN KRE KLL IL F+   +WK++FGK  D LE++ + +  Y + +   +VNKFIS+
Sbjct: 67  VREKNSKRETKLLGILSFIHTTVWKSLFGKPADSLEKSTEADDEYMISDNNMVVNKFISL 126

Query: 141 PKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAH-------WHKGTTYMIQFDEQVIARD 192
           PK   SLNCA FVAGI+E +L +  F + VTAH           T  +I+F+ +VI R+
Sbjct: 127 PKHLSSLNCAAFVAGIIEGILCSAEFPARVTAHNVAVEGKRFPKTVILIKFNPEVIERN 185

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9P7N9|TRS31_SCHPO Transport protein particle subunit trs31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs31 PE=3 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 113/180 (62%), Gaps = 6/180 (3%)

Query: 20  SILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDIN 79
           S+ ++ +N     D++++ +A +FSEL+Q  Q++   + EF+ KL+E G  +G KL+++ 
Sbjct: 27  SVYEQNLNKIRNSDVNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELV 86

Query: 80  FYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFIS 139
            +RE+N KRE ++L ILQ++  ++WK +FGK  D LE++ +    Y +++   L+NKFIS
Sbjct: 87  VWRERNPKRETRILGILQYIHSSVWKYLFGKHADSLEKSKEASDEYMIVDNNPLLNKFIS 146

Query: 140 VPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQVIARDK 193
           VPK+   LNC  ++AGI+E  L++  F    +AH      +   T  +I+ D  VIAR++
Sbjct: 147 VPKEMNQLNCCAYLAGIIEGFLDSAQFPCKASAHSVPLSQYPYRTVILIKLDPSVIAREE 206

TRAPP plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P15847|TPPC5_PLAFA Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum PE=3 SV=1

 Score =  124 bits (310), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/184 (40%), Positives = 116/184 (63%), Gaps = 10/184 (5%)

Query: 16  QPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKL 75
           + K+SI +K +N ++K D+S++ +++LFSE+VQYC  KS      +  LHE+G  +G KL
Sbjct: 3   KSKSSI-EKELN-RIKQDVSLSAFSILFSEMVQYCLYKSKRGYRIEDCLHEMGLRVGYKL 60

Query: 76  IDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVN 135
            +   Y+ K  KR I ++NIL F+  ++WK +F    D L ++ D    Y + ++  L+N
Sbjct: 61  NEYLTYKNK-VKRSINIINILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLN 118

Query: 136 KFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW-HKG-----TTYMIQFDEQVI 189
           KFI+VPKD G++NCA F AGIVE  L +  F++ VTAH  H+G     TT  I+F  +V+
Sbjct: 119 KFINVPKDYGNINCAAFAAGIVEGFLCSSEFQADVTAHTIHEGDDNYNTTIFIKFYPEVV 178

Query: 190 ARDK 193
            R+K
Sbjct: 179 EREK 182

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Plasmodium falciparum (taxid: 5833)

>sp|Q7KQM2|TPPC5_PLAF7 Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0358 PE=3 SV=1

 Score =  124 bits (310), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/184 (40%), Positives = 116/184 (63%), Gaps = 10/184 (5%)

Query: 16  QPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKL 75
           + K+SI +K +N ++K D+S++ +++LFSE+VQYC  KS      +  LHE+G  +G KL
Sbjct: 3   KSKSSI-EKELN-RIKQDVSLSAFSILFSEMVQYCLYKSKRGYRIEDCLHEMGLRVGYKL 60

Query: 76  IDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVN 135
            +   Y+ K  KR I ++NIL F+  ++WK +F    D L ++ D    Y + ++  L+N
Sbjct: 61  NEYLTYKNK-VKRSINIINILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLN 118

Query: 136 KFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW-HKG-----TTYMIQFDEQVI 189
           KFI+VPKD G++NCA F AGIVE  L +  F++ VTAH  H+G     TT  I+F  +V+
Sbjct: 119 KFINVPKDYGNINCAAFAAGIVEGFLCSSEFQADVTAHTIHEGDDNYNTTIFIKFYPEVV 178

Query: 190 ARDK 193
            R+K
Sbjct: 179 EREK 182

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

>sp|Q03337|TRS31_YEAST Trafficking protein particle complex subunit 31 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRS31 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 10/118 (8%)

Query: 81  YREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISV 140
           Y  K  +R++K+L+ILQF+   LW  +F    D L ++++ +  Y +++    + +FI  
Sbjct: 165 YITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFI-- 222

Query: 141 PKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQVIARD 192
           P +  +++C  FV GI++  L N GF   VTAH        + T Y+IQFD QV+ R+
Sbjct: 223 PGE--NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQVLDRE 278

Component of the TRAPP I, TRAPP II and TRAPP III complexes which act as guanine nucleotide exchange factors (GEF) for YPT1. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II plays a role in intra-Golgi transport. TRAPP III plays a role in autophagosome formation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8SU25|TRS31_ENCCU Putative trafficking protein particle complex subunit TRS31 OS=Encephalitozoon cuniculi (strain GB-M1) GN=TRS31 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 76/143 (53%), Gaps = 9/143 (6%)

Query: 30  VKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKRE 89
           +K ++ ++  + L   +++Y   +     + ++ L  +G  +G KL+++      N +RE
Sbjct: 1   MKREVPVSTMSYLVCGMIEYLMEQR---SDIEADLKSIGYEVGIKLLELC-----NFERE 52

Query: 90  IKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNC 149
           +++  +L     +L   +   +  ++E+A D +RTY L + + L ++FISVP +   L+ 
Sbjct: 53  VRISTLLYRATFDLLSLVSDSD-RRVEKARDVDRTYLLTDSDGLFSRFISVPDEWNGLSA 111

Query: 150 AIFVAGIVEAVLNNCGFKSTVTA 172
              V G+++A L   G+ S VTA
Sbjct: 112 DSIVCGMIQAALMASGYDSEVTA 134

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
307175097	191	Trafficking protein particle complex sub	0.958	0.968	0.672	6e-71
156540774	191	PREDICTED: trafficking protein particle	0.958	0.968	0.677	8e-71
307202732	191	Trafficking protein particle complex sub	0.958	0.968	0.661	3e-70
332029998	191	Trafficking protein particle complex sub	0.958	0.968	0.661	7e-70
350412173	191	PREDICTED: trafficking protein particle	0.948	0.958	0.657	8e-69
340727793	191	PREDICTED: trafficking protein particle	0.948	0.958	0.657	9e-69
328776484	191	PREDICTED: trafficking protein particle	0.948	0.958	0.657	1e-68
270015732	187	hypothetical protein TcasGA2_TC002333 [T	0.906	0.935	0.670	3e-68
189242249	190	PREDICTED: similar to conserved hypothet	0.906	0.921	0.670	4e-68
389610191	186	similar to CG10153 [Papilio xuthus]	0.937	0.973	0.675	5e-68

>gi|307175097|gb|EFN65239.1| Trafficking protein particle complex subunit 5 [Camponotus floridanus]

 Score =  272 bits (695), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 125/186 (67%), Positives = 158/186 (84%), Gaps = 1/186 (0%)

Query: 8   AGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEV 67
           + I+IS I+P+TSILDK + +K K ++S++ +ALLFSELVQYCQN+  +VPE Q+KL E+
Sbjct: 2   SSITISAIRPRTSILDKSL-SKGKGEVSLSCFALLFSELVQYCQNRVYTVPELQNKLAEM 60

Query: 68  GQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYL 127
           G  +G ++ D+   REKNGKREIKLLN+L FVK  +WK++FG+E DKLE ANDDERTYY+
Sbjct: 61  GAEVGHRITDLLVMREKNGKREIKLLNVLLFVKSTMWKSLFGREADKLEHANDDERTYYI 120

Query: 128 IEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQ 187
           IE+ESLVNKF+SVPKDKGSLNCA FVAGIVEAVL +CGF + VTAHWHKGTTYM++FD+ 
Sbjct: 121 IEKESLVNKFVSVPKDKGSLNCASFVAGIVEAVLCDCGFPAKVTAHWHKGTTYMVKFDDA 180

Query: 188 VIARDK 193
           V+ARDK
Sbjct: 181 VVARDK 186

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156540774|ref|XP_001599248.1| PREDICTED: trafficking protein particle complex subunit 5-like [Nasonia vitripennis]

 Score =  271 bits (694), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 126/186 (67%), Positives = 157/186 (84%), Gaps = 1/186 (0%)

Query: 8   AGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEV 67
           + I+IS ++P+TSILDK + +K K ++S++ YALLFSELVQYCQN+  +VPE Q+KL E+
Sbjct: 2   SSITISAVRPRTSILDKSL-SKGKGEVSLSCYALLFSELVQYCQNRVYTVPELQNKLSEM 60

Query: 68  GQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYL 127
           G  +G ++ D+   REK GKREIKLLNIL F+K  LWK++FG+E DKLE ANDDERTYY+
Sbjct: 61  GAEVGHRVTDLLVVREKGGKREIKLLNILLFIKSTLWKSLFGREADKLEHANDDERTYYI 120

Query: 128 IEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQ 187
           IE+ESLVNKF+SVPKDKGSLNCA FVAGIVEAVL +CGF + VTAHWHKGTTYM++FD+ 
Sbjct: 121 IEKESLVNKFVSVPKDKGSLNCASFVAGIVEAVLCDCGFPAKVTAHWHKGTTYMVKFDDA 180

Query: 188 VIARDK 193
           VIARDK
Sbjct: 181 VIARDK 186

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202732|gb|EFN82023.1| Trafficking protein particle complex subunit 5 [Harpegnathos saltator]

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 123/186 (66%), Positives = 158/186 (84%), Gaps = 1/186 (0%)

Query: 8   AGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEV 67
           + I+IS I+P+TSILDK + +K K ++S++ +ALLFSELVQYCQN+  +VPE Q+KL E+
Sbjct: 2   SSITISAIRPRTSILDKSL-SKGKGEVSLSCFALLFSELVQYCQNRVYTVPELQNKLAEI 60

Query: 68  GQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYL 127
           G  +G ++ D+   REK+GKREIKLLN+L F+K  +WK++FG+E DKLE ANDDERTYY+
Sbjct: 61  GAEVGHRITDLLVVREKSGKREIKLLNVLLFIKSTIWKSLFGREADKLEHANDDERTYYI 120

Query: 128 IEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQ 187
           IE+ESLVNKF+SVPKDKGSLNCA FVAGIVEAVL +CGF + VTAHWHKGTTYM++FD+ 
Sbjct: 121 IEKESLVNKFVSVPKDKGSLNCASFVAGIVEAVLYDCGFPAKVTAHWHKGTTYMVKFDDA 180

Query: 188 VIARDK 193
           V+ARDK
Sbjct: 181 VVARDK 186

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029998|gb|EGI69823.1| Trafficking protein particle complex subunit 5 [Acromyrmex echinatior]

 Score =  268 bits (686), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 123/186 (66%), Positives = 157/186 (84%), Gaps = 1/186 (0%)

Query: 8   AGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEV 67
           + I+IS I+P+TSILDK + +K K ++S++ +ALLFSELVQYCQN+  +VPE Q+KL E+
Sbjct: 2   SSITISAIRPRTSILDKSL-SKGKGEVSLSCFALLFSELVQYCQNRVYTVPELQNKLAEI 60

Query: 68  GQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYL 127
           G  +G ++ D+   REK GKREIKLLN+L F+K  +WK++FG+E DKLE ANDDERTYY+
Sbjct: 61  GAEVGHRITDLLVVREKGGKREIKLLNVLLFIKSTVWKSLFGREADKLEHANDDERTYYI 120

Query: 128 IEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQ 187
           IE+ESLVNKF+SVPKDKGSLNCA FVAGIVEAVL +CGF + VTAHWHKGTTYM++FD+ 
Sbjct: 121 IEKESLVNKFVSVPKDKGSLNCASFVAGIVEAVLCDCGFPAKVTAHWHKGTTYMVKFDDA 180

Query: 188 VIARDK 193
           V+ARDK
Sbjct: 181 VVARDK 186

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412173|ref|XP_003489563.1| PREDICTED: trafficking protein particle complex subunit 5-like [Bombus impatiens]

 Score =  265 bits (677), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 121/184 (65%), Positives = 156/184 (84%), Gaps = 1/184 (0%)

Query: 10  ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQ 69
           I+IS ++ +TSILDK + +K K ++S++ +ALLFSELVQYCQN+  +VPE Q+KL E+G 
Sbjct: 4   ITISAVRTRTSILDKSL-SKGKGEVSLSCFALLFSELVQYCQNRVYTVPELQNKLAEIGT 62

Query: 70  SIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIE 129
            +G K+ D+   REK GKREIKLLNIL F+K  +WK++FG+E DKLE ANDDERTYY+IE
Sbjct: 63  EVGHKVTDLLVVREKGGKREIKLLNILLFIKSTVWKSLFGREADKLEHANDDERTYYIIE 122

Query: 130 QESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVI 189
           +E+LVNKFISVPKDKGSLNCA F+AGIVEA+L +CGF++ VTAHWHKGTTYM++FD+ V+
Sbjct: 123 KEALVNKFISVPKDKGSLNCASFIAGIVEAILCDCGFQAKVTAHWHKGTTYMVKFDDAVV 182

Query: 190 ARDK 193
           ARDK
Sbjct: 183 ARDK 186

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727793|ref|XP_003402220.1| PREDICTED: trafficking protein particle complex subunit 5-like [Bombus terrestris]

 Score =  265 bits (676), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 121/184 (65%), Positives = 156/184 (84%), Gaps = 1/184 (0%)

Query: 10  ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQ 69
           I+IS ++ +TSILDK + +K K ++S++ +ALLFSELVQYCQN+  +VPE Q+KL EVG 
Sbjct: 4   ITISAVRTRTSILDKSL-SKGKGEVSLSCFALLFSELVQYCQNRVYTVPELQNKLAEVGT 62

Query: 70  SIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIE 129
            +G ++ D+   REK GKREIKLLNIL F+K  +WK++FG+E DKLE ANDDERTYY+IE
Sbjct: 63  EVGHRVTDLLVVREKGGKREIKLLNILLFIKSTVWKSLFGREADKLEHANDDERTYYIIE 122

Query: 130 QESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVI 189
           +E+LVNKFISVPKDKGSLNCA F+AGIVEA+L +CGF++ VTAHWHKGTTYM++FD+ V+
Sbjct: 123 KEALVNKFISVPKDKGSLNCASFIAGIVEAILCDCGFQAKVTAHWHKGTTYMVKFDDAVV 182

Query: 190 ARDK 193
           ARDK
Sbjct: 183 ARDK 186

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776484|ref|XP_395045.2| PREDICTED: trafficking protein particle complex subunit 5-like [Apis mellifera]

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/184 (65%), Positives = 156/184 (84%), Gaps = 1/184 (0%)

Query: 10  ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQ 69
           I+IS I+ +TSILDK + +K K ++S++ +ALLFSELVQYCQN+  +VPE Q+KL E+G 
Sbjct: 4   ITISAIRTRTSILDKSL-SKGKGEVSLSCFALLFSELVQYCQNRVYTVPELQNKLAEIGM 62

Query: 70  SIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIE 129
            +G ++ D+   REK GKREIKLLNIL F+K  +WK++FG+E DKLE ANDDERTYY+IE
Sbjct: 63  EVGHRITDLLVVREKGGKREIKLLNILLFIKSTVWKSLFGREADKLEHANDDERTYYIIE 122

Query: 130 QESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVI 189
           +E++VNKFISVPKDKGSLNCA F+AGIVEA+L +CGF++ VTAHWHKGTTYM++FD+ VI
Sbjct: 123 KEAIVNKFISVPKDKGSLNCASFIAGIVEAILCDCGFQAKVTAHWHKGTTYMVKFDDAVI 182

Query: 190 ARDK 193
           ARDK
Sbjct: 183 ARDK 186

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270015732|gb|EFA12180.1| hypothetical protein TcasGA2_TC002333 [Tribolium castaneum]

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 118/176 (67%), Positives = 151/176 (85%), Gaps = 1/176 (0%)

Query: 18  KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 77
           KTSILDKP+ ++ K ++S++ +ALLFSE+VQYCQNKS +VPE Q++LHE+G+ +G KLID
Sbjct: 8   KTSILDKPL-SRGKGEVSLSCFALLFSEVVQYCQNKSHTVPELQNRLHELGRRVGVKLID 66

Query: 78  INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 137
           + F RE+NGKREIKLLNIL FVK  LWK +FG+E DKLE +NDDE TYYL+E+E LVN+F
Sbjct: 67  LYFLRERNGKREIKLLNILLFVKSTLWKALFGREADKLEHSNDDENTYYLMEKEPLVNRF 126

Query: 138 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
           ISVP+DK SLNCA+F+AGI+EAVL   GF + VTAHWHKGTTYM++FD+ V++RDK
Sbjct: 127 ISVPRDKSSLNCAVFIAGIIEAVLTGTGFTAKVTAHWHKGTTYMVKFDDTVVSRDK 182

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189242249|ref|XP_973092.2| PREDICTED: similar to conserved hypothetical protein, partial [Tribolium castaneum]

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 118/176 (67%), Positives = 151/176 (85%), Gaps = 1/176 (0%)

Query: 18  KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 77
           KTSILDKP+ ++ K ++S++ +ALLFSE+VQYCQNKS +VPE Q++LHE+G+ +G KLID
Sbjct: 11  KTSILDKPL-SRGKGEVSLSCFALLFSEVVQYCQNKSHTVPELQNRLHELGRRVGVKLID 69

Query: 78  INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 137
           + F RE+NGKREIKLLNIL FVK  LWK +FG+E DKLE +NDDE TYYL+E+E LVN+F
Sbjct: 70  LYFLRERNGKREIKLLNILLFVKSTLWKALFGREADKLEHSNDDENTYYLMEKEPLVNRF 129

Query: 138 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
           ISVP+DK SLNCA+F+AGI+EAVL   GF + VTAHWHKGTTYM++FD+ V++RDK
Sbjct: 130 ISVPRDKSSLNCAVFIAGIIEAVLTGTGFTAKVTAHWHKGTTYMVKFDDTVVSRDK 185

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389610191|dbj|BAM18707.1| similar to CG10153 [Papilio xuthus]

 Score =  262 bits (670), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 123/182 (67%), Positives = 151/182 (82%), Gaps = 1/182 (0%)

Query: 12  ISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSI 71
           +S  + KTS +DKP+ +K K +IS+ LYALLFSE+VQYCQN+S S+ E Q+KL E+GQ +
Sbjct: 1   MSSSRSKTSFIDKPL-SKGKGEISLALYALLFSEIVQYCQNRSHSIHELQTKLSEIGQDV 59

Query: 72  GAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQE 131
           G +L+D+ F RE+N KREIKLLN+L FVK  LWK +FGKE DKLE ANDDERTYY+IE++
Sbjct: 60  GTRLLDLYFVRERNSKREIKLLNMLLFVKSTLWKVLFGKEADKLEHANDDERTYYIIEKD 119

Query: 132 SLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIAR 191
           +LVNKFISVPKDKGSLNCA F AGI+EAVL   GF + VTAHWHKGTTYM++FD+ VIAR
Sbjct: 120 ALVNKFISVPKDKGSLNCATFNAGIIEAVLTKSGFPAKVTAHWHKGTTYMVKFDDSVIAR 179

Query: 192 DK 193
           DK
Sbjct: 180 DK 181

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
ZFIN|ZDB-GENE-040718-185	188	trappc5 "trafficking protein p	0.948	0.973	0.565	1.6e-56
UNIPROTKB|Q5F359	188	TRAPPC5 "Trafficking protein p	0.906	0.930	0.556	1.3e-50
UNIPROTKB|Q8IUR0	188	TRAPPC5 "Trafficking protein p	0.906	0.930	0.545	2.5e-49
UNIPROTKB|F1MSD6	188	TRAPPC5 "Trafficking protein p	0.906	0.930	0.539	5.2e-49
UNIPROTKB|E2RBU4	188	TRAPPC5 "Uncharacterized prote	0.906	0.930	0.539	5.2e-49
UNIPROTKB|F1SCJ1	188	TRAPPC5 "Uncharacterized prote	0.906	0.930	0.539	5.2e-49
MGI|MGI:1913932	188	Trappc5 "trafficking protein p	0.906	0.930	0.539	5.2e-49
RGD|1563971	188	Trappc5 "trafficking protein p	0.906	0.930	0.539	5.2e-49
WB|WBGene00013259	185	Y57A10A.16 [Caenorhabditis ele	0.896	0.935	0.551	8.5e-49
UNIPROTKB|Q9NA81	185	Y57A10A.16 "Protein Y57A10A.16	0.896	0.935	0.551	8.5e-49

ZFIN|ZDB-GENE-040718-185 trappc5 "trafficking protein particle complex 5" [Danio rerio (taxid:7955)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 104/184 (56%), Positives = 146/184 (79%)

Query:    10 ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQ 69
             + +   + K++IL++ + T+ K ++S++ +ALLFSE+VQYCQ++  SV E Q++L ++GQ
Sbjct:     1 MEVRFTRGKSAILERSL-TRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQ 59

Query:    70 SIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIE 129
              +GA L+D+   REKNGKRE K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE
Sbjct:    60 GVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIE 119

Query:   130 QESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVI 189
             +E L+N +ISVPK+  +LNCA F  GIVEA+L + GF + VT HWHKGTT MI+FDE VI
Sbjct:   120 KEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVI 179

Query:   190 ARDK 193
             ARDK
Sbjct:   180 ARDK 183

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5F359 TRAPPC5 "Trafficking protein particle complex subunit 5" [Gallus gallus (taxid:9031)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 98/176 (55%), Positives = 136/176 (77%)

Query:    18 KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 77
             K+ +L++P+  + + ++S++ +ALLF ELVQYCQ +  SV E QSKL ++G  +G +L+D
Sbjct:     9 KSPLLERPLG-RPRGEVSLSAFALLFCELVQYCQRRVYSVAELQSKLAQLGHQVGLRLLD 67

Query:    78 INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 137
                 RE+ G+RE K+L++L FVK  +W+ +FGKE DKLE+ANDD++TYY+IE+E LVN F
Sbjct:    68 PLVSRERGGRRETKVLSVLLFVKGPVWRALFGKEADKLEQANDDDKTYYVIEREPLVNTF 127

Query:   138 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
             ISVP++  +LNCA F AG+VEAVL   GF + VTAHWHKGTT MI+F+E VIARDK
Sbjct:   128 ISVPRENSTLNCAAFTAGLVEAVLGASGFPAKVTAHWHKGTTLMIKFEEGVIARDK 183

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|Q8IUR0 TRAPPC5 "Trafficking protein particle complex subunit 5" [Homo sapiens (taxid:9606)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 96/176 (54%), Positives = 136/176 (77%)

Query:    18 KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 77
             K+++L++ +  + + ++S++ +ALLFSELVQ+CQ++  SV E QS+L  +G+ +GA+++D
Sbjct:     9 KSALLERAL-ARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQVGARVLD 67

Query:    78 INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 137
                 REK  +RE K+L  L FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +
Sbjct:    68 ALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTY 127

Query:   138 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
             ISVPK+  +LNCA F AGIVEAVL + GF + VTAHWHKGTT MI+F+E VIARD+
Sbjct:   128 ISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDR 183

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F1MSD6 TRAPPC5 "Trafficking protein particle complex subunit 5" [Bos taurus (taxid:9913)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 95/176 (53%), Positives = 136/176 (77%)

Query:    18 KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 77
             K+++L++ +  + + ++S++ +ALLFSELVQ+CQ++  SV E Q++L  +G+ +GA+++D
Sbjct:     9 KSALLERAL-ARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLD 67

Query:    78 INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 137
                 REK  +RE K+L  L FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +
Sbjct:    68 ALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTY 127

Query:   138 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
             ISVPK+  +LNCA F AGIVEAVL + GF + VTAHWHKGTT MI+F+E VIARD+
Sbjct:   128 ISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDR 183

GO:0030008 "TRAPP complex" evidence=IEA

UNIPROTKB|E2RBU4 TRAPPC5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 95/176 (53%), Positives = 136/176 (77%)

Query:    18 KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 77
             K+++L++ +  + + ++S++ +ALLFSELVQ+CQ++  SV E Q++L  +G+ +GA+++D
Sbjct:     9 KSALLERAL-VRPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLD 67

Query:    78 INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 137
                 REK  +RE K+L  L FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +
Sbjct:    68 ALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINAY 127

Query:   138 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
             ISVPK+  +LNCA F AGIVEAVL + GF + VTAHWHKGTT MI+F+E VIARD+
Sbjct:   128 ISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDR 183

GO:0030008 "TRAPP complex" evidence=IEA

UNIPROTKB|F1SCJ1 TRAPPC5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 95/176 (53%), Positives = 136/176 (77%)

Query:    18 KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 77
             K+++L++ +  + + ++S++ +ALLFSELVQ+CQ++  SV E Q++L  +G+ +GA+++D
Sbjct:     9 KSALLERAL-ARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLD 67

Query:    78 INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 137
                 REK  +RE K+L  L FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +
Sbjct:    68 ALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTY 127

Query:   138 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
             ISVPK+  +LNCA F AGIVEAVL + GF + VTAHWHKGTT MI+F+E VIARD+
Sbjct:   128 ISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDR 183

GO:0030008 "TRAPP complex" evidence=IEA

MGI|MGI:1913932 Trappc5 "trafficking protein particle complex 5" [Mus musculus (taxid:10090)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 95/176 (53%), Positives = 136/176 (77%)

Query:    18 KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 77
             K+++L++ +  + + ++S++ +ALLFSELVQ+CQ++  SV E Q++L  +G+ +GA+++D
Sbjct:     9 KSALLERAL-VRPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLD 67

Query:    78 INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 137
                 REK  +RE K+L  L FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +
Sbjct:    68 ALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTY 127

Query:   138 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
             ISVPK+  +LNCA F AGIVEAVL + GF + VTAHWHKGTT MI+F+E VIARD+
Sbjct:   128 ISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDR 183

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IDA

RGD|1563971 Trappc5 "trafficking protein particle complex 5" [Rattus norvegicus (taxid:10116)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 95/176 (53%), Positives = 136/176 (77%)

Query:    18 KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 77
             K+++L++ +  + + ++S++ +ALLFSELVQ+CQ++  SV E Q++L  +G+ +GA+++D
Sbjct:     9 KSALLERAL-VRPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLD 67

Query:    78 INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 137
                 REK  +RE K+L  L FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +
Sbjct:    68 ALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTY 127

Query:   138 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
             ISVPK+  +LNCA F AGIVEAVL + GF + VTAHWHKGTT MI+F+E VIARD+
Sbjct:   128 ISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDR 183

GO:0030008 "TRAPP complex" evidence=IEA;ISO

WB|WBGene00013259 Y57A10A.16 [Caenorhabditis elegans (taxid:6239)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 96/174 (55%), Positives = 128/174 (73%)

Query:    19 TSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDI 78
             T ILDK ++ + K +I+++ +A+LFSE+V Y QN+S +V +   K+   G+ +G ++ DI
Sbjct:     5 TGILDKSLS-RGKTEINLSTFAVLFSEMVLYAQNRSETVTDIHDKIASYGKQVGLRMFDI 63

Query:    79 NFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFI 138
                REK  KRE KLL +L F+K  +WKN+FGKE DKLER+NDD  TY LIE++ +VN +I
Sbjct:    64 ITLREKGYKRETKLLGMLMFIKSTVWKNLFGKEADKLERSNDDHCTYLLIEKDPMVNTYI 123

Query:   139 SVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARD 192
             SVP+DKG LNCA F AGIVEA+L +  FK  VTAHWH GT Y+IQFDE VIAR+
Sbjct:   124 SVPRDKGVLNCAAFAAGIVEAILESASFKCKVTAHWHNGTAYVIQFDESVIARE 177

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q9NA81 Y57A10A.16 "Protein Y57A10A.16" [Caenorhabditis elegans (taxid:6239)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 96/174 (55%), Positives = 128/174 (73%)

Query:    19 TSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDI 78
             T ILDK ++ + K +I+++ +A+LFSE+V Y QN+S +V +   K+   G+ +G ++ DI
Sbjct:     5 TGILDKSLS-RGKTEINLSTFAVLFSEMVLYAQNRSETVTDIHDKIASYGKQVGLRMFDI 63

Query:    79 NFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFI 138
                REK  KRE KLL +L F+K  +WKN+FGKE DKLER+NDD  TY LIE++ +VN +I
Sbjct:    64 ITLREKGYKRETKLLGMLMFIKSTVWKNLFGKEADKLERSNDDHCTYLLIEKDPMVNTYI 123

Query:   139 SVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARD 192
             SVP+DKG LNCA F AGIVEA+L +  FK  VTAHWH GT Y+IQFDE VIAR+
Sbjct:   124 SVPRDKGVLNCAAFAAGIVEAILESASFKCKVTAHWHNGTAYVIQFDESVIARE 177

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54YG5	TPPC5_DICDI	No assigned EC number	0.4301	0.8860	0.9193	yes	N/A
Q2NL13	TPPC5_BOVIN	No assigned EC number	0.5340	0.9067	0.9308	yes	N/A
Q8IUR0	TPPC5_HUMAN	No assigned EC number	0.5454	0.9067	0.9308	yes	N/A
Q7KQM2	TPPC5_PLAF7	No assigned EC number	0.4076	0.9015	0.9456	yes	N/A
Q9CQA1	TPPC5_MOUSE	No assigned EC number	0.5397	0.9067	0.9308	yes	N/A
Q9P7N9	TRS31_SCHPO	No assigned EC number	0.3611	0.9015	0.8325	yes	N/A
Q5F359	TPPC5_CHICK	No assigned EC number	0.5568	0.9067	0.9308	yes	N/A
P15847	TPPC5_PLAFA	No assigned EC number	0.4076	0.9015	0.9456	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	193
PTZ00391	168	PTZ00391, PTZ00391, transport protein particle com	7e-48
pfam04051	148	pfam04051, TRAPP, Transport protein particle (TRAP	1e-47
COG5128	208	COG5128, COG5128, Transport protein particle (TRAP	1e-42

>gnl|CDD|240398 PTZ00391, PTZ00391, transport protein particle component (TRAPP) superfamily; Provisional

 Score =  153 bits (389), Expect = 7e-48
 Identities = 75/166 (45%), Positives = 108/166 (65%), Gaps = 7/166 (4%)

Query: 34  ISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLL 93
           +S++ +A LFSE+VQYC +KS      + KLHE+G  +G KL ++  YREKN KRE K+L
Sbjct: 1   VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKIL 60

Query: 94  NILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFV 153
           +IL F+  ++WK +FG   D L ++ D +  Y + ++  L+NKFISVPKD G +NCA F 
Sbjct: 61  SILTFISKHVWKYLFGHSSDLL-KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFA 119

Query: 154 AGIVEAVLNNCGFKSTVTAHW------HKGTTYMIQFDEQVIARDK 193
           AGIVE +L +  F + VTAH       +  TT +I+F  +VI R+K
Sbjct: 120 AGIVEGILCSAEFPANVTAHTVEDTPKNFSTTILIKFYPEVIEREK 165

Length = 168

>gnl|CDD|217862 pfam04051, TRAPP, Transport protein particle (TRAPP) component

 Score =  152 bits (386), Expect = 1e-47
 Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 10/154 (6%)

Query: 38  LYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQ 97
           L+ALL+ ELV Y         +  ++L ++G +IG +LI+    R    KR   LL +L+
Sbjct: 1   LFALLYGELVSYLLRDV---EDVNARLEKMGYNIGQRLIERLLARS-GSKRCTDLLEVLK 56

Query: 98  FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 157
           F+  +LWK +FGK+ D LE ++D E  Y LI+ ++ +++F+ +P D   LN   F+ GI+
Sbjct: 57  FICKDLWKMLFGKQADVLETSHDGE--YVLIDNDNPLSQFVELPPDYSGLNYLNFLCGII 114

Query: 158 EAVLNNCGFKSTVTAH----WHKGTTYMIQFDEQ 187
              L++ GF + VTAH       GT + I+F++ 
Sbjct: 115 RGALSSLGFPAKVTAHSDPLRGPGTVFEIKFEKS 148

TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterized TRAPP proteins and has a dimeric structure with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi. Length = 148

>gnl|CDD|227457 COG5128, COG5128, Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

 Score =  141 bits (357), Expect = 1e-42
 Identities = 56/168 (33%), Positives = 102/168 (60%), Gaps = 6/168 (3%)

Query: 31  KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREI 90
           K ++ ++  A LF E+++Y   +   + +F++KL  +G  +G KL+++  +R +N KRE+
Sbjct: 37  KREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPKREV 96

Query: 91  KLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCA 150
           ++L ILQ +  +LW  +FG   D+LE++ + +R Y +++ + L+++FISVP +   L+C 
Sbjct: 97  RILTILQRIHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFISVPDEWNGLSCD 156

Query: 151 IFVAGIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQVIARD 192
             V GI++  L   GF   VTAH          T ++I+ D+ VIAR+
Sbjct: 157 SIVCGIIQGFLMAAGFPCEVTAHPEPSENLPNRTVFLIRIDDLVIARE 204

Length = 208

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
PTZ00391	168	transport protein particle component (TRAPP) super	100.0
KOG3315|consensus	191		100.0
PF04051	152	TRAPP: Transport protein particle (TRAPP) componen	100.0
COG5128	208	Transport protein particle (TRAPP) complex subunit	100.0
KOG3316|consensus	163		100.0
KOG3330|consensus	183		100.0
COG1719	158	Predicted hydrocarbon binding protein (contains V4	93.55
PF09536	178	DUF2378: Protein of unknown function (DUF2378); In	84.12
TIGR02265	179	Mxa_TIGR02265 Myxococcus xanthus paralogous family	83.07

>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional

Probab=100.00  E-value=2.7e-60  Score=384.76  Aligned_cols=159  Identities=47%  Similarity=0.787  Sum_probs=153.3

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHhhhCcccc
Q psy8965          34 ISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECD  113 (193)
Q Consensus        34 Vs~s~f~~L~~EiV~~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~lFgkqaD  113 (193)
                      ||+|+|+|||+|||+|+++++++.++++++|+++||+||.||+|++..|++..+|+++++++|+|||+++|+.+||||+|
T Consensus         1 vslsafafLf~EmV~y~~~~~~~~~ele~rL~~~G~~VG~rllE~l~~r~~~~~R~~~~L~iLkFI~~~~W~~lFgk~aD   80 (168)
T PTZ00391          1 VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKILSILTFISKHVWKYLFGHSSD   80 (168)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHHhCchhh
Confidence            79999999999999999999999999999999999999999999999999878999999999999999999999999999


Q ss_pred             ccccccCCCCEEEEEcCCcccccceeccCCCCCcchhhhhHHHHHHHHhhCCCceEEEEEe------CCceEEEEEechh
Q psy8965         114 KLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW------HKGTTYMIQFDEQ  187 (193)
Q Consensus       114 ~L~~~tn~~g~yvl~D~~pl~~~~is~P~~~~~l~~~~f~cGIIrGaL~~lG~~~~Vta~~------~~~~~f~Ikf~~~  187 (193)
                      +|+ .+||+|+|||+||+|++++|+|+|++++.++|++|+||||||+|+++||+|+||||+      +.+|+|+|||+++
T Consensus        81 ~Lk-t~d~~~~Y~i~Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA~~~~~~~~~~~t~~likf~~~  159 (168)
T PTZ00391         81 LLK-SQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTAHTVEDTPKNFSTTILIKFYPE  159 (168)
T ss_pred             hhc-ccCCCCeEEEEeCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEEEeccCCCCCCceEEEEEecHH
Confidence            995 446999999999999999999999999999999999999999999999999999998      4699999999999


Q ss_pred             hhhccC
Q psy8965         188 VIARDK  193 (193)
Q Consensus       188 v~~re~  193 (193)
                      |++||+
T Consensus       160 v~~Re~  165 (168)
T PTZ00391        160 VIEREK  165 (168)
T ss_pred             HHHHHh
Confidence            999996

>KOG3315|consensus

Probab=100.00  E-value=2.5e-58  Score=369.38  Aligned_cols=181  Identities=52%  Similarity=0.954  Sum_probs=175.5

Q ss_pred             ccccCCCCccccCccCccCcccchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccCCccccc
Q psy8965          12 ISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIK   91 (193)
Q Consensus        12 ~~~~~~~~~i~~~~l~~~~~~~Vs~s~f~~L~~EiV~~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~   91 (193)
                      .+.+..+.+|+|++|. +.|.+||+|+|+|||+|||+|+++++.++.|++.+|+++||+||.||+|++..|++..+|+++
T Consensus         6 ~s~~~~~s~il~~~L~-~~rtEvslS~fA~Lfsemiqy~q~qv~tv~d~e~kL~~~G~~VG~rllel~~~rEr~~kREtk   84 (191)
T KOG3315|consen    6 ASTMRIPSNILDKSLS-KGRTEVSLSAFAFLFSEMIQYLQSQVFTVADLETKLADYGYQVGIRLLELLNFRERGQKRETK   84 (191)
T ss_pred             ccccccccchhhhhhh-ccCccccHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchhHHH
Confidence            3456778899999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhCccccccccccCCCCEEEEEcCCcccccceeccCCCCCcchhhhhHHHHHHHHhhCCCceEEE
Q psy8965          92 LLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVT  171 (193)
Q Consensus        92 ~ld~lkFIck~~Wk~lFgkqaD~L~~~tn~~g~yvl~D~~pl~~~~is~P~~~~~l~~~~f~cGIIrGaL~~lG~~~~Vt  171 (193)
                      ++++|.||+.++||++|||.+|.|+|++++.++|+|+|++|++++|||+|+|++.++|++|+||||+|+|.+.||||.||
T Consensus        85 ilgiL~fi~~tvwk~Lfgk~ad~LEka~d~~~tYmiid~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpckVT  164 (191)
T KOG3315|consen   85 ILGILQFIHSTVWKYLFGKEADKLEKANDDDRTYMIIDKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCKVT  164 (191)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHhcccccceEEEEcCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeC-CceEEEEEechhhhhccC
Q psy8965         172 AHWH-KGTTYMIQFDEQVIARDK  193 (193)
Q Consensus       172 a~~~-~~~~f~Ikf~~~v~~re~  193 (193)
                      ||++ .+|+++|||+++|++||+
T Consensus       165 Ah~~P~gt~~~IkF~~~Viare~  187 (191)
T KOG3315|consen  165 AHWHPEGTTYLIKFDESVIAREG  187 (191)
T ss_pred             eeecCCCCeEEEEecHHHHhhhh
Confidence            9995 799999999999999985

>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment

Probab=100.00  E-value=2.7e-50  Score=321.40  Aligned_cols=147  Identities=34%  Similarity=0.642  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHhhhCcccccccc
Q psy8965          38 LYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLER  117 (193)
Q Consensus        38 ~f~~L~~EiV~~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~lFgkqaD~L~~  117 (193)
                      +|+|||+|||+|+++++ +.++++++|++|||+||.||+|+++.+.+..+|+.+++|+++||||++|+++||||+|+|+ 
T Consensus         1 ~f~~l~~e~V~~~~~~~-~~~e~~~~Le~~G~~vG~rl~E~~~~~~~~~~r~~~~~~~~~fI~k~~W~~~fgk~~d~l~-   78 (152)
T PF04051_consen    1 AFALLFGEMVQYLLRRE-DVEEVNKRLERMGYNVGQRLAERLLRRRKNSPRFTDILDILKFICKDFWKMLFGKQADNLK-   78 (152)
T ss_dssp             HHHHHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTCSTSSHHHHHHHHHHHHHHHHHSS--SEEE-
T ss_pred             CHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhHHHHHHHHHHhccCcccCCHHHHHHHHHHHHHHHHhCCCCcccc-
Confidence            69999999999999955 8899999999999999999999999885667999999999999999999999999999999 


Q ss_pred             ccCC-CCEEEEEcCCcccccceeccCCCCCcchhhhhHHHHHHHHhhCCCceEEEEEe----CCceEEEEEechh
Q psy8965         118 ANDD-ERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW----HKGTTYMIQFDEQ  187 (193)
Q Consensus       118 ~tn~-~g~yvl~D~~pl~~~~is~P~~~~~l~~~~f~cGIIrGaL~~lG~~~~Vta~~----~~~~~f~Ikf~~~  187 (193)
                       +|| +|+|+|+|++|++++|+++|++++.++|++|+||||||||+++||+|+|+|+.    +|+|+|+|||++.
T Consensus        79 -~n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~~f~Ik~~~~  152 (152)
T PF04051_consen   79 -TNHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPAEVTAESDPLNGPQTTFQIKFEKQ  152 (152)
T ss_dssp             -EETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEEEEEEEECCCGTTEEEEEEEEEHH
T ss_pred             -ccCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCceEEEEEEeccCCCCeEEEEEEecC
Confidence             888 99999999999999999999888899999999999999999999999999999    3789999999874

TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....

>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=100.00  E-value=4e-50  Score=322.11  Aligned_cols=174  Identities=33%  Similarity=0.709  Sum_probs=167.7

Q ss_pred             CCccccCccCccCcccchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHH
Q psy8965          18 KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQ   97 (193)
Q Consensus        18 ~~~i~~~~l~~~~~~~Vs~s~f~~L~~EiV~~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lk   97 (193)
                      +.+||+++|- -.+++|+.|+|+|||.||++|+++..+...++|.+|.++||+||+||+|++.+|.++.+|+.+++++++
T Consensus        25 ~~~vy~qnl~-~~~~ev~lStmaflf~emI~~l~~q~s~~~dfE~kL~~~Gy~vGikLlEL~nfr~rnpkre~rIl~iLq  103 (208)
T COG5128          25 GKSVYEQNLK-IMKREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPKREVRILTILQ  103 (208)
T ss_pred             chhHHHHhHH-HHhccCchHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhHHHHHHHHHHHHHhhhCccchhhHHHHHH
Confidence            3488999995 778899999999999999999999999999999999999999999999999999988899999999999


Q ss_pred             HHHHHHHHhhhCccccccccccCCCCEEEEEcCCcccccceeccCCCCCcchhhhhHHHHHHHHhhCCCceEEEEEe---
Q psy8965          98 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW---  174 (193)
Q Consensus        98 FIck~~Wk~lFgkqaD~L~~~tn~~g~yvl~D~~pl~~~~is~P~~~~~l~~~~f~cGIIrGaL~~lG~~~~Vta~~---  174 (193)
                      ||+.++|+++||+.+|.|+|+.+..++|||+||+|++++|||+|+|+++++|.+|+||||+|+|.+.||+|+||||.   
T Consensus       104 ~ih~~lwsylf~~~~d~leKs~e~d~eYmivDn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vtAh~~P~  183 (208)
T COG5128         104 RIHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTAHPEPS  183 (208)
T ss_pred             HHHHHHHHHHhccchHHHHHhhhcCceeEEecCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCcceeccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998   


Q ss_pred             ---CCceEEEEEechhhhhcc
Q psy8965         175 ---HKGTTYMIQFDEQVIARD  192 (193)
Q Consensus       175 ---~~~~~f~Ikf~~~v~~re  192 (193)
                         +.+|+|+|+|++.|++||
T Consensus       184 ~~~p~Rtv~lI~~d~~vi~re  204 (208)
T COG5128         184 ENLPNRTVFLIRIDDLVIARE  204 (208)
T ss_pred             cCCCcceEEEEEecHHHHhhh
Confidence               458999999999999998

>KOG3316|consensus

Probab=100.00  E-value=4.8e-44  Score=282.29  Aligned_cols=145  Identities=24%  Similarity=0.359  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCCh---------hHHHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHhh
Q psy8965          37 NLYALLFSELVQYCQNKSLSV---------PEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNI  107 (193)
Q Consensus        37 s~f~~L~~EiV~~~~~~~~~~---------~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~l  107 (193)
                      -+|++|+.|||.++.+..++.         .+..++||.|||+||++|.||++ +++  +|+.|.||+|||||||+|+.+
T Consensus         5 v~f~~Lh~EmV~~~~~~e~d~e~g~~~~~k~~~~~~LE~IGFqVG~~L~Erl~-~e~--~rf~deLeimKFiCkDfW~~V   81 (163)
T KOG3316|consen    5 VLFDFLHNEMVHTALRSEEDSENGRASIEKSHDLARLESIGFQVGRKLSERLT-RER--NRFKDELEIMKFICKDFWSIV   81 (163)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhcccccccchHHHHHHHHhhhHHHHHHHHHHh-hhh--hhHHHHHHHHHHHHHHHHHHH
Confidence            469999999999988875431         23668999999999999999997 765  799999999999999999999


Q ss_pred             hCccccccccccCCCCEEEEEcCCcccccceeccCCC--CCcchhhhhHHHHHHHHhhCCCceEEEEEe--CCceEEEEE
Q psy8965         108 FGKECDKLERANDDERTYYLIEQESLVNKFISVPKDK--GSLNCAIFVAGIVEAVLNNCGFKSTVTAHW--HKGTTYMIQ  183 (193)
Q Consensus       108 FgkqaD~L~~~tn~~g~yvl~D~~pl~~~~is~P~~~--~~l~~~~f~cGIIrGaL~~lG~~~~Vta~~--~~~~~f~Ik  183 (193)
                      |+||+|||+  |||+|+||++|+.+.+.+.+|-.+++  ....|++|+||+|||+|++||++|.|+|++  .|.|.|+|+
T Consensus        82 F~KQiDNLr--TNhrG~yVlqD~~Fr~l~~~s~G~~~~~~a~~flaFpcGliRGvLs~LGi~siVtA~v~slPtckFhV~  159 (163)
T KOG3316|consen   82 FKKQIDNLR--TNHRGTYVLQDNKFRWLTSMSPGTQYLEEAPKFLAFPCGLIRGVLSNLGISSIVTASVSSLPTCKFHVQ  159 (163)
T ss_pred             Hhhhhhhcc--ccCCceEEEecCceeeeeecCchhHHHHhcCCeEEeehhHHHHHHhhCCCceEEeeecCCCCceEEEEE
Confidence            999999999  99999999999997655455522222  234799999999999999999999999999  799999999


Q ss_pred             ech
Q psy8965         184 FDE  186 (193)
Q Consensus       184 f~~  186 (193)
                      +.+
T Consensus       160 v~~  162 (163)
T KOG3316|consen  160 VQP  162 (163)
T ss_pred             ecC
Confidence            875

>KOG3330|consensus

Probab=100.00  E-value=2.5e-35  Score=234.19  Aligned_cols=156  Identities=17%  Similarity=0.280  Sum_probs=143.4

Q ss_pred             ccchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHhhhCcc
Q psy8965          32 HDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKE  111 (193)
Q Consensus        32 ~~Vs~s~f~~L~~EiV~~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~lFgkq  111 (193)
                      .++|+++|.++|+.||.++.++.++.++|+.+|++|||+||.||+|.+++|.. -+||.|+.++...|||..+|+++|.+
T Consensus        14 ~k~naELFtLTYGaiV~ql~kDyed~e~Vn~qLdkMGyNiG~RLiedFLAks~-vpRC~dfretaevlak~afkmyLgit   92 (183)
T KOG3330|consen   14 KKMNAELFTLTYGAIVTQLCKDYEDPEDVNKQLDKMGYNIGIRLIEDFLAKSN-VPRCVDFRETAEVLAKVAFKMYLGIT   92 (183)
T ss_pred             HhhhhhhhhhhHHHHHHHHHHhhcCHHHHHHHHHhccchhhHHHHHHHHhhcC-CchhhhHHHHHHHHHHhhhheeeecc
Confidence            38999999999999999999999999999999999999999999999999975 69999999999999999999999999


Q ss_pred             ccccccccCCCCEE-EEEcCCcccccceeccCC-CCCcchhhhhHHHHHHHHhhCCCceEEEEEe-----CCceEEEEEe
Q psy8965         112 CDKLERANDDERTY-YLIEQESLVNKFISVPKD-KGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW-----HKGTTYMIQF  184 (193)
Q Consensus       112 aD~L~~~tn~~g~y-vl~D~~pl~~~~is~P~~-~~~l~~~~f~cGIIrGaL~~lG~~~~Vta~~-----~~~~~f~Ikf  184 (193)
                      +..- .|+.+.++| +|.|+|||+. ||+.|++ .++|+|++++||+|||||+++.+++.|++..     +..|+++|+|
T Consensus        93 psit-swss~~~efsliLe~NPL~e-fVe~p~d~~ssL~YsnlLcGviRGALEmV~m~~dv~f~~d~lrGd~~tEIrv~f  170 (183)
T KOG3330|consen   93 PSIT-SWSSDGNEFSLILEDNPLVE-FVEEPPDARSSLWYSNLLCGVIRGALEMVQMKVDVVFLSDTLRGDSVTEIRVRF  170 (183)
T ss_pred             ccee-eecCCCCEEEEEecCCcHHH-HHHhCHHHhhhHHHHHHHHHHHHhHHHHHhhhheeeeeeehhcCCCceeeeeeH
Confidence            9876 578888899 7799999998 9977755 5789999999999999999999999999887     5679999999


Q ss_pred             chhhhh
Q psy8965         185 DEQVIA  190 (193)
Q Consensus       185 ~~~v~~  190 (193)
                      .+.+-+
T Consensus       171 ~r~lkd  176 (183)
T KOG3330|consen  171 LRILKD  176 (183)
T ss_pred             HHHHhh
Confidence            987654

>COG1719 Predicted hydrocarbon binding protein (contains V4R domain) [General function prediction only]

Probab=93.55  E-value=2.6  Score=33.84  Aligned_cols=105  Identities=17%  Similarity=0.241  Sum_probs=63.2

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHhhhCccccccccccCCCCEEEEEcCCcccccce
Q psy8965          59 EFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFI  138 (193)
Q Consensus        59 ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~lFgkqaD~L~~~tn~~g~yvl~D~~pl~~~~i  138 (193)
                      +....+.++|+.+|..++..        .   ...++..|+..  |....+.-.+. +  .+...+..+.|..+-.    
T Consensus        46 ~~~~~~y~~G~~~G~~l~~~--------~---~~~~~~~f~~~--~~~~~~~v~~~-~--~~~~~~v~v~~c~~c~----  105 (158)
T COG1719          46 GAEPVLYEAGKEIGKALIKE--------K---LIEELENFLEF--WEEVGGGVLEV-E--EEEPLVVEVYDCIECA----  105 (158)
T ss_pred             CcHHHHHHHHHHHHHHhcch--------h---chHHHHHHHHH--HHhhcceEEEc-c--cCCCceEEEEcCchhh----
Confidence            44567888999999988861        1   23344455533  88777764443 2  2223455555555422    


Q ss_pred             eccCCCCCcchhhhhHHHHHHHHhhCCCceEEEEEe------CCceEEEEEec
Q psy8965         139 SVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW------HKGTTYMIQFD  185 (193)
Q Consensus       139 s~P~~~~~l~~~~f~cGIIrGaL~~lG~~~~Vta~~------~~~~~f~Ikf~  185 (193)
                      -+|.  .+-.-+.|.+|+|.|+|+...=+-..--++      ++.|+|.|+..
T Consensus       106 ~~p~--~~ePvC~~~aG~iag~l~~~~~k~~~v~Et~C~~~G~~~C~F~i~~~  156 (158)
T COG1719         106 GLPG--IGEPVCHLEAGFIAGFLEEILGKKVEVEETECAAEGDDRCVFEIRLK  156 (158)
T ss_pred             cCCC--CCCcchhHHhhHHHHHHHHHhCCCeEEEEEEEeecCCCceEEEEEec
Confidence            1232  112247889999999999875443322222      78999999864

>PF09536 DUF2378: Protein of unknown function (DUF2378); InterPro: IPR011751 This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus (strain DK 1622)

Probab=84.12  E-value=2  Score=35.34  Aligned_cols=36  Identities=25%  Similarity=0.425  Sum_probs=30.1

Q ss_pred             hhhhhHHHHHHHHhhCCCce-EEEEEe--CCceEEEEEe
Q psy8965         149 CAIFVAGIVEAVLNNCGFKS-TVTAHW--HKGTTYMIQF  184 (193)
Q Consensus       149 ~~~f~cGIIrGaL~~lG~~~-~Vta~~--~~~~~f~Ikf  184 (193)
                      .-.|.+|+++|+|+..|-+. .|....  ...|+|.|.-
T Consensus       139 ~p~f~~G~l~~~L~~~Ga~~~~V~~~~~~~~~~~y~i~W  177 (178)
T PF09536_consen  139 PPAFHEGVLEAALEAAGARGPRVRVRERGGDDAEYRIRW  177 (178)
T ss_pred             ChHHHHHHHHHHHHHcCCCCCEEEEEecCCCceEEEEEe
Confidence            45789999999999999994 777666  6789999864

Members are about 200 amino acids in length. No other homologs are known; the function is unknown.

>TIGR02265 Mxa_TIGR02265 Myxococcus xanthus paralogous family TIGR02265

Probab=83.07  E-value=2.1  Score=35.37  Aligned_cols=36  Identities=19%  Similarity=0.313  Sum_probs=28.0

Q ss_pred             hhhhhHHHHHHHHhhCC-CceEEEEEe--CCceEEEEEe
Q psy8965         149 CAIFVAGIVEAVLNNCG-FKSTVTAHW--HKGTTYMIQF  184 (193)
Q Consensus       149 ~~~f~cGIIrGaL~~lG-~~~~Vta~~--~~~~~f~Ikf  184 (193)
                      ...|.+|+++|+|+..| -...|....  ...|+|.|.-
T Consensus       140 ~~~f~~G~l~~aLe~~Ga~~~~V~~~~~g~~~~~y~i~W  178 (179)
T TIGR02265       140 PPAYHEGVLHAALRAVGARDVRVRGRAFGGLDATYRLSW  178 (179)
T ss_pred             chHHHHHHHHHHHHHcCCCCCEEEEEecCCCCceEEEEe
Confidence            37899999999999999 334555444  7899999864

This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus DK 1622. Members are about 200 amino acids in length. No other homologs are known; the function is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
2j3w_B	188	The Crystal Structure Of The Bet3-Trs31-Sedlin Comp		5e-63
2j3r_B	157	The Crystal Structure Of The Bet3-Trs31 Heterodimer		2e-57
3cue_B	283	Crystal Structure Of A Trapp Subassembly Activating		6e-14

>pdb|2J3W|B Chain B, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex. Length = 188

Iteration: 1
 Score =  236 bits (603), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 104/184 (56%), Positives = 146/184 (79%), Gaps = 1/184 (0%)
Query: 10  ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQ 69
           + +   + K++IL++ + T+ K ++S++ +ALLFSE+VQYCQ++  SV E Q++L ++GQ
Sbjct: 1   MEVRFTRGKSAILERSL-TRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQ 59
Query: 70  SIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIE 129
            +GA L+D+   REKNGKRE K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE
Sbjct: 60  GVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIE 119
Query: 130 QESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVI 189
           +E L+N +ISVPK+  +LNCA F  GIVEA+L + GF + VT HWHKGTT MI+FDE VI
Sbjct: 120 KEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVI 179
Query: 190 ARDK 193
           ARDK
Sbjct: 180 ARDK 183

>pdb|2J3R|B Chain B, The Crystal Structure Of The Bet3-Trs31 Heterodimer Length = 157

Iteration: 1
 Score =  218 bits (555), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 94/156 (60%), Positives = 127/156 (81%)
Query: 31  KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREI 90
           K ++S++ +ALLFSE+VQYCQ++  SV E Q++L ++GQ +GA L+D+   REKNGKRE 
Sbjct: 2   KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRET 61
Query: 91  KLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCA 150
           K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE+E L+N +ISVPK+  +LNCA
Sbjct: 62  KVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCA 121
Query: 151 IFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDE 186
            F  GIVEA+L + GF + VT HWHKGTT MI+FDE
Sbjct: 122 AFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDE 157

>pdb|3CUE|B Chain B, Crystal Structure Of A Trapp Subassembly Activating The Rab Ypt1p Length = 283

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 10/118 (8%)
Query: 81  YREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISV 140
           Y  K  +R++K+L+ILQF+   LW  +F    D L ++++ +  Y +++    + +FI  
Sbjct: 165 YITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFI-- 222
Query: 141 PKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQVIARD 192
           P +  +++C  FV GI++  L N GF   VTAH        + T Y+IQFD QV+ R+
Sbjct: 223 PGE--NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQVLDRE 278

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	2e-70
3cue_B	283	Transport protein particle 31 kDa subunit; membran	4e-47
3cue_B	283	Transport protein particle 31 kDa subunit; membran	5e-16
1sz7_A	200	BET3 homolog, trafficking protein particle complex	1e-45
2bjn_A	160	TPC6, trafficking protein particle complex subunit	1e-39
2c0j_B	160	R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens	2e-36
3cue_D	193	Transport protein particle 22 kDa subunit; membran	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B* Length = 188

 Score =  211 bits (538), Expect = 2e-70
 Identities = 103/184 (55%), Positives = 145/184 (78%), Gaps = 1/184 (0%)

Query: 10  ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQ 69
           + +   + K++IL++ +  + K ++S++ +ALLFSE+VQYCQ++  SV E Q++L ++GQ
Sbjct: 1   MEVRFTRGKSAILERSLT-RPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQ 59

Query: 70  SIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIE 129
            +GA L+D+   REKNGKRE K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE
Sbjct: 60  GVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIE 119

Query: 130 QESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVI 189
           +E L+N +ISVPK+  +LNCA F  GIVEA+L + GF + VT HWHKGTT MI+FDE VI
Sbjct: 120 KEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVI 179

Query: 190 ARDK 193
           ARDK
Sbjct: 180 ARDK 183

>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 283

 Score =  155 bits (391), Expect = 4e-47
 Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 15/183 (8%)

Query: 22  LDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLI----- 76
           L     +     +      L  +E      N S S     +       S   +L      
Sbjct: 101 LLNFRASVSPSSLPRASAFLSQNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTE 160

Query: 77  DINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNK 136
            ++ Y  K  +R++K+L+ILQF+   LW  +F    D L ++++ +  Y +++    + +
Sbjct: 161 SLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQ 220

Query: 137 FISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQVIA 190
           FI       +++C  FV GI++  L N GF   VTAH        + T Y+IQFD QV+ 
Sbjct: 221 FIPGE----NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQVLD 276

Query: 191 RDK 193
           R+ 
Sbjct: 277 REG 279

>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 283

 Score = 73.1 bits (178), Expect = 5e-16
 Identities = 18/128 (14%), Positives = 45/128 (35%), Gaps = 1/128 (0%)

Query: 3   SATNTAGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQS 62
                     S     + I  + +  K + + S++  A LF E++        +  +F++
Sbjct: 27  GPKQAITSEASTTYIPSRIYSESLLFK-RQEASLSAMAFLFQEMISQLHRTCKTAGDFET 85

Query: 63  KLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDE 122
           KL + G +IG +L+++  +R       +   +       +  K         +   +   
Sbjct: 86  KLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLSQNESSSKLSNASNSPGMLANSSTA 145

Query: 123 RTYYLIEQ 130
            +    E+
Sbjct: 146 TSASANER 153

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A* Length = 200

 Score =  148 bits (375), Expect = 1e-45
 Identities = 29/187 (15%), Positives = 64/187 (34%), Gaps = 12/187 (6%)

Query: 17  PKTSILDKPINTKVKHD-ISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKL 75
                  +  N   +   +S  L+ L +  LV        +  +   +L ++G +IG +L
Sbjct: 5   HHHHGSSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRL 64

Query: 76  IDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVN 135
           I+    R  N  R          +    +K   G        +   +    ++E   LV+
Sbjct: 65  IEDFLARS-NVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVD 123

Query: 136 KFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVT--AHWHKG-------TTYMIQFDE 186
            F+ +P +  SL  +  + G++   L                KG         ++ + ++
Sbjct: 124 -FVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIED 182

Query: 187 QVIARDK 193
            + A ++
Sbjct: 183 NLPAGEE 189

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C* Length = 160

 Score =  131 bits (332), Expect = 1e-39
 Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 13/162 (8%)

Query: 33  DISINLYALLFSELVQYCQNKS----LSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKR 88
                L+ LL +E+V      +    +      +KL  +G  +G  LI+      K+  R
Sbjct: 3   MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIE---RFTKDTAR 59

Query: 89  EIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLN 148
               L+I++F+  + W  +F K+ D L   +     Y L + +  +   +S  K      
Sbjct: 60  FKDELDIMKFICKDFWTTVFKKQIDNLRTNHQG--IYVLQDNKFRLLTQMSAGKQYLEHA 117

Query: 149 CAI--FVAGIVEAVLNNCGFKSTVTAHWHK--GTTYMIQFDE 186
                F  G++   L+N G KS VTA         + +   +
Sbjct: 118 SKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQK 159

>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B* Length = 160

 Score =  123 bits (310), Expect = 2e-36
 Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 14/162 (8%)

Query: 34  ISINLYALLFSELVQYCQNKSLSVPEFQ-----SKLHEVGQSIGAKLIDINFYREKNGKR 88
               L+  L +E+V                   S L  +G  +G  L +    RE    R
Sbjct: 3   ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGER-LPRETLAFR 61

Query: 89  EIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKD--KGS 146
           E   L++L+F+  +LW  +F K+ D L   +    TY L +    +   ++      + +
Sbjct: 62  EE--LDVLKFLCKDLWVAVFQKQMDSLRTNHQG--TYVLQDNSFPLLLPMASGLQYLEEA 117

Query: 147 LNCAIFVAGIVEAVLNNCGFKSTVTAHWHK--GTTYMIQFDE 186
                F  G++   L   G +S VTA         + +   +
Sbjct: 118 PKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVIPK 159

>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 193

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 4/140 (2%)

Query: 34  ISINLYALLFSELV-QYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKL 92
           I+  L+ L +  +V Q CQ+      +    L+ +G +IG +LI+ +F       R   L
Sbjct: 25  INTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIE-DFLARTALPRCENL 83

Query: 93  LNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKD-KGSLNCAI 151
           +   + +    +K       + +   + ++ T+ LI  E+ +  F+ +P D   SL  + 
Sbjct: 84  VKTSEVLSKCAFKIFLNITPN-ITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSN 142

Query: 152 FVAGIVEAVLNNCGFKSTVT 171
            + G+++  L        V 
Sbjct: 143 ILCGVLKGSLEMVQLDCDVW 162

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 26/210 (12%), Positives = 51/210 (24%), Gaps = 79/210 (37%)

Query: 20  SILDKPINTKVKHDISINLYALLFSE------LVQYCQNKSLSVPEFQSKLHEVGQS-IG 72
            + D        H IS++ +++  +       L++Y   +   +P      +    S I 
Sbjct: 276 QVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 73  AKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERAND---------DER 123
             + D                       +  W N     CDKL    +         + R
Sbjct: 335 ESIRD----------------------GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 124 TYYLIEQESLVNKFISVPKDKGSLNCAIFVAGI------------------VEAVLNNCG 165
             +                       ++F                      V  V+N   
Sbjct: 373 KMF--------------------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 166 FKSTVTAHWHKGTT--YMIQFDEQVIARDK 193
             S V     + T     I  + +V   ++
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENE 442

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 12/87 (13%)

Query: 61  QSKLHEVGQSIGAK------LIDINFYR----EKNGKREIKLLNILQFVKINLWKNIF-G 109
           + K+     +  A       L  + FY+    + + K E  +  IL F+   + +N+   
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP-KIEENLICS 562

Query: 110 KECDKLERANDDERTYYLIEQESLVNK 136
           K  D L  A   E      E    V +
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 14/77 (18%)

Query: 76  IDINFYREKNGKREIKLLNILQFVK-------INLWKNIFGK-ECDK-LERANDDERTYY 126
           +D      +   ++I  +    FV         ++ K+I  K E D  +   +    T  
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 127 LI-----EQESLVNKFI 138
           L      +QE +V KF+
Sbjct: 67  LFWTLLSKQEEMVQKFV 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	100.0
3cue_B	283	Transport protein particle 31 kDa subunit; membran	100.0
2c0j_B	160	R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens	100.0
1sz7_A	200	BET3 homolog, trafficking protein particle complex	100.0
2bjn_A	160	TPC6, trafficking protein particle complex subunit	100.0
3cue_D	193	Transport protein particle 22 kDa subunit; membran	100.0
2oso_A	163	Hypothetical protein MJ1460; structural genomics,	94.81

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*

Probab=100.00  E-value=8.7e-66  Score=423.07  Aligned_cols=183  Identities=56%  Similarity=1.017  Sum_probs=159.0

Q ss_pred             ccccccCCCCccccCccCccCcccchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccCCccc
Q psy8965          10 ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKRE   89 (193)
Q Consensus        10 ~~~~~~~~~~~i~~~~l~~~~~~~Vs~s~f~~L~~EiV~~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~   89 (193)
                      |+.+.+++..+|+||||+ +.+++||+|+|+|||+|||+|++++.++.++++++|++|||+||.||+|++++|++..+||
T Consensus         1 ~~~~~~~~~~~i~~~~l~-~~~~~Vs~s~f~ll~~EiV~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~   79 (188)
T 2j3w_B            1 MEVRFTRGKSAILERSLT-RPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRE   79 (188)
T ss_dssp             ---------------------CCEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             CCcccCCCCCccccCccc-cchhHhhHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCccc
Confidence            456678889999999999 9999999999999999999999999999999999999999999999999999999756899


Q ss_pred             ccHHHHHHHHHHHHHHhhhCccccccccccCCCCEEEEEcCCcccccceeccCCCCCcchhhhhHHHHHHHHhhCCCceE
Q psy8965          90 IKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKST  169 (193)
Q Consensus        90 ~~~ld~lkFIck~~Wk~lFgkqaD~L~~~tn~~g~yvl~D~~pl~~~~is~P~~~~~l~~~~f~cGIIrGaL~~lG~~~~  169 (193)
                      ++++|+++||||++||++||||+|+|+++|||+|+|+|+|+||++++|+|+|+++++++|++|+||||||||+++||+|+
T Consensus        80 ~d~ld~l~fI~k~~Wk~lfgk~~d~L~~st~~~~~y~i~D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~  159 (188)
T 2j3w_B           80 TKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAK  159 (188)
T ss_dssp             CSHHHHHHHHHTHHHHHHHSSCCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCccccccccCCCCEEEEEcCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceE
Confidence            99999999999999999999999999877999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCceEEEEEechhhhhccC
Q psy8965         170 VTAHWHKGTTYMIQFDEQVIARDK  193 (193)
Q Consensus       170 Vta~~~~~~~f~Ikf~~~v~~re~  193 (193)
                      ||||++|+|+|+|||+++|++||+
T Consensus       160 Vta~~~~~t~f~Ikf~~~v~~re~  183 (188)
T 2j3w_B          160 VTVHWHKGTTLMIKFDESVIARDK  183 (188)
T ss_dssp             EEEEESSSEEEEEEECHHHHHHHH
T ss_pred             EEEEeCCCEEEEEEecHHHHHHHH
Confidence            999999999999999999999985

>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-56  Score=384.29  Aligned_cols=170  Identities=30%  Similarity=0.622  Sum_probs=145.4

Q ss_pred             CccccCccCccCcccchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccC-------------
Q psy8965          19 TSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKN-------------   85 (193)
Q Consensus        19 ~~i~~~~l~~~~~~~Vs~s~f~~L~~EiV~~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~-------------   85 (193)
                      ..|+|++|. +.+.+||+|+|+|||+|||+|++++.++++|++++|+.|||+||.||+|++++|++.             
T Consensus        43 ~~i~~~~l~-~~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~~  121 (283)
T 3cue_B           43 SRIYSESLL-FKRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLS  121 (283)
T ss_dssp             -------------CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred             Ccccccccc-cCcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCcccccccccccc
Confidence            699999999 888999999999999999999999999999999999999999999999999998752             


Q ss_pred             ------------------------------------------------CcccccHHHHHHHHHHHHHHhhhCcccccccc
Q psy8965          86 ------------------------------------------------GKREIKLLNILQFVKINLWKNIFGKECDKLER  117 (193)
Q Consensus        86 ------------------------------------------------~~R~~~~ld~lkFIck~~Wk~lFgkqaD~L~~  117 (193)
                                                                      .+||.|++|+++||||++|+++||||+|+|++
T Consensus       122 s~~ss~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Lek  201 (283)
T 3cue_B          122 QNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVK  201 (283)
T ss_dssp             -------------------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhcc
Confidence                                                            38999999999999999999999999999965


Q ss_pred             ccCCCCEEEEEcCCcccccceeccCCCCCcchhhhhHHHHHHHHhhCCCceEEEEEe------CCceEEEEEechhhhhc
Q psy8965         118 ANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW------HKGTTYMIQFDEQVIAR  191 (193)
Q Consensus       118 ~tn~~g~yvl~D~~pl~~~~is~P~~~~~l~~~~f~cGIIrGaL~~lG~~~~Vta~~------~~~~~f~Ikf~~~v~~r  191 (193)
                      +++++|+|||+|++|++++|++++    +++|++|+||||||||+++||+|+||||.      +++|+|+|||+++|++|
T Consensus       202 tn~~~geYvL~Dn~~pLt~fVs~~----~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~~~~~T~~~IkF~~~v~~R  277 (283)
T 3cue_B          202 SSERDNEYMIVDNFPTLTQFIPGE----NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQVLDR  277 (283)
T ss_dssp             CSSCSSCEEEEESSCSSSCSSCTT----CCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSSCTTCEEEECCCCHHHHHH
T ss_pred             ccCCCCEEEEEeCchHHHhhhccC----CcchhhhHHHHHHHHHHhCCCceEEEEEEcccccCCCceEEEEEecHHHHhh
Confidence            666779999999999999999974    68999999999999999999999999998      35899999999999999


Q ss_pred             cC
Q psy8965         192 DK  193 (193)
Q Consensus       192 e~  193 (193)
                      |+
T Consensus       278 e~  279 (283)
T 3cue_B          278 EG  279 (283)
T ss_dssp             HH
T ss_pred             hh
Confidence            95

>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*

Probab=100.00  E-value=4.7e-54  Score=345.45  Aligned_cols=148  Identities=21%  Similarity=0.251  Sum_probs=132.2

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCC-----hhHHHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHhhh
Q psy8965          34 ISINLYALLFSELVQYCQNKSLS-----VPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIF  108 (193)
Q Consensus        34 Vs~s~f~~L~~EiV~~~~~~~~~-----~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~lF  108 (193)
                      ||.|+|+|||+|||+|++++.++     .++++++|++|||+||.||+|+++ |+.  +||.|++|+++||||++|+++|
T Consensus         3 ~s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r~~--~r~~d~ld~l~fI~k~~Wk~~f   79 (160)
T 2c0j_B            3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-RET--LAFREELDVLKFLCKDLWVAVF   79 (160)
T ss_dssp             CCHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-GGG--GTTCCHHHHHHHHHTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-hcc--CccCCHHHHHHHHHHHHHHHHh
Confidence            79999999999999999998763     567799999999999999999998 764  8999999999999999999999


Q ss_pred             CccccccccccCCCCEEEEEcCCcccccceeccCCCC--CcchhhhhHHHHHHHHhhCCCceEEEEEe--CCceEEEEEe
Q psy8965         109 GKECDKLERANDDERTYYLIEQESLVNKFISVPKDKG--SLNCAIFVAGIVEAVLNNCGFKSTVTAHW--HKGTTYMIQF  184 (193)
Q Consensus       109 gkqaD~L~~~tn~~g~yvl~D~~pl~~~~is~P~~~~--~l~~~~f~cGIIrGaL~~lG~~~~Vta~~--~~~~~f~Ikf  184 (193)
                      |||+|+|+  |||+|+|+|+||+|.+++|+|+|+++.  .++|++|+||||||||+++||+|+||||+  .|+|+|+|||
T Consensus        80 gk~~d~L~--t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~~~p~~~f~i~~  157 (160)
T 2c0j_B           80 QKQMDSLR--TNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVI  157 (160)
T ss_dssp             SSCCSEEE--ECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEESSTTCEEEEEEC
T ss_pred             CCcCccce--eCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeecCCCceEEEEEe
Confidence            99999998  999999999999999999999999887  89999999999999999999999999999  8999999999


Q ss_pred             ch
Q psy8965         185 DE  186 (193)
Q Consensus       185 ~~  186 (193)
                      .+
T Consensus       158 ~~  159 (160)
T 2c0j_B          158 PK  159 (160)
T ss_dssp             CC
T ss_pred             ec
Confidence            75

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*

Probab=100.00  E-value=4.7e-53  Score=349.96  Aligned_cols=159  Identities=17%  Similarity=0.246  Sum_probs=143.8

Q ss_pred             cCcccchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHhhh
Q psy8965          29 KVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIF  108 (193)
Q Consensus        29 ~~~~~Vs~s~f~~L~~EiV~~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~lF  108 (193)
                      +...+||+|+|+|||+|||+|++++.++.++++++|++|||+||.||+|++++|+. .+||.+++|+++||||++||++|
T Consensus        18 ~~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~-~~R~~d~le~l~fI~k~~Wk~lF   96 (200)
T 1sz7_A           18 TESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSN-VGRCHDFRETADVIAKVAFKMYL   96 (200)
T ss_dssp             ----CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCSCCCHHHHHHHHHHTHHHHHH
T ss_pred             cccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhccC-CCccCCHHHHHHHHHHHHHHHHh
Confidence            34568999999999999999999999999999999999999999999999999984 58999999999999999999999


Q ss_pred             CccccccccccCCCCEEEE-EcCCcccccceeccCCCCCcchhhhhHHHHHHHHhhCCCceEEEEEe-----CCceEEEE
Q psy8965         109 GKECDKLERANDDERTYYL-IEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW-----HKGTTYMI  182 (193)
Q Consensus       109 gkqaD~L~~~tn~~g~yvl-~D~~pl~~~~is~P~~~~~l~~~~f~cGIIrGaL~~lG~~~~Vta~~-----~~~~~f~I  182 (193)
                      |||+|+|+ +||++|+|+| +|+||+.+ |+|+|++++.++|++|+||||||||+++||+|+|.+..     +++|+|+|
T Consensus        97 gk~ad~L~-~t~~~~~Y~L~~D~nPL~~-fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~Vta~~~~d~l~g~~~t~~~I  174 (200)
T 1sz7_A           97 GITPSITN-WSPAGDEFSLILENNPLVD-FVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRM  174 (200)
T ss_dssp             SCCCEEEC-CCTTSCEEEEEESSCTTCT-TCCCCGGGTTCCTTTHHHHHHHHHHHTTTEEEEEEEEECGGGTCSSEEEEE
T ss_pred             CCCCccce-ecCCCCEEEEEECCcHHHH-hccCCccccCCchhhhHHHHHHHHHHhCCCEEEEEEEecccCCCCCEEEEE
Confidence            99999996 5999999999 89999999 99999999999999999999999999999995554443     46899999


Q ss_pred             Eechhhhh
Q psy8965         183 QFDEQVIA  190 (193)
Q Consensus       183 kf~~~v~~  190 (193)
                      ||+++|.+
T Consensus       175 kf~~~v~~  182 (200)
T 1sz7_A          175 RFIRRIED  182 (200)
T ss_dssp             EEEEEC--
T ss_pred             EEhhhhhh
Confidence            99998865

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*

Probab=100.00  E-value=1.7e-52  Score=336.33  Aligned_cols=149  Identities=23%  Similarity=0.347  Sum_probs=126.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHhcCChh----HHHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHhhh
Q psy8965          33 DISINLYALLFSELVQYCQNKSLSVP----EFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIF  108 (193)
Q Consensus        33 ~Vs~s~f~~L~~EiV~~~~~~~~~~~----ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~lF  108 (193)
                      -||.++|+|||+|||+|++++.++.+    +++++|++|||+||.||+|+++ |++  +||.+++|+++||||++|+++|
T Consensus         3 m~s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r~~--~r~~~~ld~lkfI~k~~Wk~~f   79 (160)
T 2bjn_A            3 MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-KDT--ARFKDELDIMKFICKDFWTTVF   79 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC------------CHHHHHHHHTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-hcc--CccCCHHHHHHHHHHHHHHHHh
Confidence            48999999999999999999987764    5799999999999999999998 765  8999999999999999999999


Q ss_pred             CccccccccccCCCCEEEEEcCCcccccceeccCCCC--CcchhhhhHHHHHHHHhhCCCceEEEEEe--CCceEEEEEe
Q psy8965         109 GKECDKLERANDDERTYYLIEQESLVNKFISVPKDKG--SLNCAIFVAGIVEAVLNNCGFKSTVTAHW--HKGTTYMIQF  184 (193)
Q Consensus       109 gkqaD~L~~~tn~~g~yvl~D~~pl~~~~is~P~~~~--~l~~~~f~cGIIrGaL~~lG~~~~Vta~~--~~~~~f~Ikf  184 (193)
                      |||+|+|+  |||+|+|+|+|++|.+++|+|+|+++.  .++|++|+||||||||+++||+|+||||+  .|+|+|+|++
T Consensus        80 gk~~d~L~--t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~~~p~~~F~i~~  157 (160)
T 2bjn_A           80 KKQIDNLR--TNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMI  157 (160)
T ss_dssp             SSCCSEEE--EEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEESSTTCEEEEEEE
T ss_pred             CCCCcccc--cCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEecCCCceEEEEEe
Confidence            99999998  999999999999999999999999874  89999999999999999999999999999  7999999999


Q ss_pred             ch
Q psy8965         185 DE  186 (193)
Q Consensus       185 ~~  186 (193)
                      .+
T Consensus       158 ~~  159 (160)
T 2bjn_A          158 QK  159 (160)
T ss_dssp             C-
T ss_pred             cc
Confidence            75

>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-53  Score=347.95  Aligned_cols=173  Identities=18%  Similarity=0.274  Sum_probs=150.6

Q ss_pred             ccccccCCCCccccCccCccCcccchHHHHHHHHHHHHH-HHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccCCcc
Q psy8965          10 ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQ-YCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKR   88 (193)
Q Consensus        10 ~~~~~~~~~~~i~~~~l~~~~~~~Vs~s~f~~L~~EiV~-~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R   88 (193)
                      |++...+.+..+|..     ...+||+|+|+|||+|||+ |++++.++.++++++|++|||+||.||+|++++|+. .+|
T Consensus         6 ~~~~~~~~~~~~~~~-----~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~-~~R   79 (193)
T 3cue_D            6 QSRSLKAMGEEIWKN-----KTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTA-LPR   79 (193)
T ss_dssp             --CHHHHHHHHHHSS-----SSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCC
T ss_pred             ccccccccchhhhcc-----chhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhccC-CCc
Confidence            455444556667732     3458999999999999998 677777779999999999999999999999999984 589


Q ss_pred             cccHHHHHHHHHHHHHHhhhCccccccccccCCCCEEEE-EcCCcccccceeccCCC-CCcchhhhhHHHHHHHHhhCCC
Q psy8965          89 EIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYL-IEQESLVNKFISVPKDK-GSLNCAIFVAGIVEAVLNNCGF  166 (193)
Q Consensus        89 ~~~~ld~lkFIck~~Wk~lFgkqaD~L~~~tn~~g~yvl-~D~~pl~~~~is~P~~~-~~l~~~~f~cGIIrGaL~~lG~  166 (193)
                      |.+++|+++||||++||++||||+|+|+ +|||+|+|+| +|+||+.+ |+|+|+++ +.++|++|+||||||||+++||
T Consensus        80 ~~~~le~l~fI~k~~Wk~lfgk~~d~L~-~t~~~~~y~L~~d~nPl~~-fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~  157 (193)
T 3cue_D           80 CENLVKTSEVLSKCAFKIFLNITPNITN-WSHNKDTFSLILDENPLAD-FVELPMDAMKSLWYSNILCGVLKGSLEMVQL  157 (193)
T ss_dssp             CSSHHHHHHHHHHHHHHHHSSCCCCCBC-CCTTSCCCBCCBSCCGGGS-SCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHHHHHHhCCCCccce-ecCCCCEEEEEECCchhhh-heeCcHhHHhCcchhhhHHHHHHHHHHhCCC
Confidence            9999999999999999999999999996 5999999999 99999999 99999988 8899999999999999999999


Q ss_pred             ceEEEEEe-----CCceEEEEEechhhhh
Q psy8965         167 KSTVTAHW-----HKGTTYMIQFDEQVIA  190 (193)
Q Consensus       167 ~~~Vta~~-----~~~~~f~Ikf~~~v~~  190 (193)
                      +|+|.++.     +++|+|+|||+++|.+
T Consensus       158 ~Vta~~~~d~l~g~~~t~~~Ikf~~~v~d  186 (193)
T 3cue_D          158 DCDVWFVSDILRGDSQTEIKVKLNRILKD  186 (193)
T ss_dssp             CCEEEECCCSSSSSSCBCEEEECCCCCSC
T ss_pred             EEEEEEeeccCCCCCCEEEEEEEhhhhhc
Confidence            65554444     3579999999998865

>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*

Probab=94.81  E-value=0.065  Score=42.00  Aligned_cols=124  Identities=17%  Similarity=0.223  Sum_probs=73.2

Q ss_pred             ccchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHh-hhCc
Q psy8965          32 HDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKN-IFGK  110 (193)
Q Consensus        32 ~~Vs~s~f~~L~~EiV~~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~-lFgk  110 (193)
                      ..|+.+.|.+|+..+-..+.....+..     |.+.||..|..+.+.++             +.+    +++|+. =+|.
T Consensus        26 ~~vp~~~f~~l~~~l~~~l~~~G~~~~-----L~~~G~~~G~~l~~~~~-------------~~l----~~~~~~~G~G~   83 (163)
T 2oso_A           26 KKIPMPYFGLFALVIFDKVKELGSETS-----LYEIGEEFGKMLSPKNI-------------EEL----KKIFKLMNFGD   83 (163)
T ss_dssp             CCCCHHHHHHHHHHHHHHHC--CCCCC-----HHHHHHHHHHHHCCSSH-------------HHH----HHHHHHHTCCE
T ss_pred             CcccHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHHH-------------HHH----HHHHHHcCceE
Confidence            578999999999887766544332222     89999999998865521             211    355654 1222


Q ss_pred             ccccccccc---CCCCEEEE-EcCCcccccceeccCCCCCcchhhhhHHHHHHHHhhC-CCceEEEEEe-----CCceEE
Q psy8965         111 ECDKLERAN---DDERTYYL-IEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNC-GFKSTVTAHW-----HKGTTY  180 (193)
Q Consensus       111 qaD~L~~~t---n~~g~yvl-~D~~pl~~~~is~P~~~~~l~~~~f~cGIIrGaL~~l-G~~~~Vta~~-----~~~~~f  180 (193)
                       .+...  .   ..++.+++ ..++|....    |   .+-.-++|.+|++.|+|+.+ |=+..|.-..     ++.|.|
T Consensus        84 -l~i~~--~~~~~~~~~~~i~v~~s~e~~~----~---~~~pvC~~~~G~~aG~~s~~~g~~~~~~E~~C~a~G~~~C~F  153 (163)
T 2oso_A           84 -LEIDE--NKILLKNPPYKIKLSNPPYQWV----S---KEEPIHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKCVF  153 (163)
T ss_dssp             -EECCH--HHHHHSCSCEEEEEESCSCTTC----C---CSSCCCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSEEE
T ss_pred             -EEEEe--ccccccCCcEEEEEEeCceeec----C---CCCceeHHHHHHHHHHHHHHhCCCeEEEEeEeEcCCCCeEEE
Confidence             11111  1   12345544 556654431    2   12234788899999999875 5555443333     789999


Q ss_pred             EEEechh
Q psy8965         181 MIQFDEQ  187 (193)
Q Consensus       181 ~Ikf~~~  187 (193)
                      .++..+.
T Consensus       154 ~~~~~~~  160 (163)
T 2oso_A          154 EVKEVDE  160 (163)
T ss_dssp             EEEEEC-
T ss_pred             EEEEHHH
Confidence            9998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d2j3wb1	168	d.278.1.2 (B:21-188) TRAPPC5, similar to trafficki	7e-66
d1wc9a_	161	d.278.1.2 (A:) Trafficking protein particle comple	8e-40

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]} Length = 168

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

 Score =  197 bits (503), Expect = 7e-66
 Identities = 100/163 (61%), Positives = 133/163 (81%)

Query: 31  KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREI 90
           K ++S++ +ALLFSE+VQYCQ++  SV E Q++L ++GQ +GA L+D+   REKNGKRE 
Sbjct: 1   KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRET 60

Query: 91  KLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCA 150
           K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE+E L+N +ISVPK+  +LNCA
Sbjct: 61  KVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCA 120

Query: 151 IFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
            F  GIVEA+L + GF + VT HWHKGTT MI+FDE VIARDK
Sbjct: 121 AFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVIARDK 163

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  131 bits (331), Expect = 8e-40
 Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 7/160 (4%)

Query: 34  ISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLL 93
           +S  L+ L +  LV        +  +   +L  +G +IG +LI+ +F    N  R     
Sbjct: 3   MSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIE-DFLARSNVGRCHDFR 61

Query: 94  NILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFV 153
                +    +K   G         +     + LI + + +  F+ +P +  +L  +  +
Sbjct: 62  ETADVIAKVAFKMYLGITPSITNW-SPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 120

Query: 154 AGIVEAVLNNCGFKSTVTAHWHK-----GTTYMIQFDEQV 188
            G++   L                     T   ++F  ++
Sbjct: 121 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRI 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d2j3wb1	168	TRAPPC5, similar to trafficking protein particle c	100.0
d1wc9a_	161	Trafficking protein particle complex subunit 3, Be	100.0
d2osoa1	152	Hypothetical protein MJ1460 {Methanococcus jannasc	95.68
d1u55a_	188	Methyl-accepting chemotaxis protein {Thermoanaerob	90.78

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

Probab=100.00  E-value=1.1e-61  Score=390.59  Aligned_cols=163  Identities=61%  Similarity=1.080  Sum_probs=158.8

Q ss_pred             cccchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHhhhCc
Q psy8965          31 KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGK  110 (193)
Q Consensus        31 ~~~Vs~s~f~~L~~EiV~~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~lFgk  110 (193)
                      |++||+|+|+|||+|||+|++++.++.++++++|++|||+||.||+|++++|++..+||++++++++||||++|+++|||
T Consensus         1 k~~Vs~s~f~~L~~ElV~y~~~~~~~~~e~~~~Le~mG~~vG~rl~E~l~~r~~~~~R~~~~~~~l~fI~k~~W~~lfgk   80 (168)
T d2j3wb1           1 KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGK   80 (168)
T ss_dssp             CCEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHTHHHHHHHSS
T ss_pred             CchhCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHHcCc
Confidence            56999999999999999999999999999999999999999999999999999878999999999999999999999999


Q ss_pred             cccccccccCCCCEEEEEcCCcccccceeccCCCCCcchhhhhHHHHHHHHhhCCCceEEEEEeCCceEEEEEechhhhh
Q psy8965         111 ECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIA  190 (193)
Q Consensus       111 qaD~L~~~tn~~g~yvl~D~~pl~~~~is~P~~~~~l~~~~f~cGIIrGaL~~lG~~~~Vta~~~~~~~f~Ikf~~~v~~  190 (193)
                      |+|+|+++++|+|+|+|+|++|++++|+|+|++++.++|++|+||||||||+++||+|+||||++|+|+|+|||+++|++
T Consensus        81 ~~d~L~~~~~~~~~y~I~d~~~~~~~~vs~p~~~~~l~y~~f~~GiIrGaL~~~g~~~~Vta~~~~~~~f~ikf~~~v~~  160 (168)
T d2j3wb1          81 EADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVIA  160 (168)
T ss_dssp             CCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEESSSEEEEEEECHHHHH
T ss_pred             CcccccccCCCCceEEEEcCCchhhheeccCccccccchHHHHHHHHHHHHHHCCCceEEEEeeCCCeEEEEEccHHHHH
Confidence            99999988889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q psy8965         191 RDK  193 (193)
Q Consensus       191 re~  193 (193)
                      |||
T Consensus       161 Re~  163 (168)
T d2j3wb1         161 RDK  163 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            995

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-50  Score=323.76  Aligned_cols=152  Identities=16%  Similarity=0.247  Sum_probs=141.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHhhhCccc
Q psy8965          33 DISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKEC  112 (193)
Q Consensus        33 ~Vs~s~f~~L~~EiV~~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~lFgkqa  112 (193)
                      |||+++|+|||+|||+|++++.++.++++++|++|||+||.||+|++++|+. .+||.+++|+++||||++|+++||||+
T Consensus         2 kv~~elfal~yg~iV~~~~~d~e~~~e~~~~Le~~G~~IG~RLiE~~~~r~~-~~R~~~~l~~l~fI~~~~wk~~fgk~~   80 (161)
T d1wc9a_           2 KMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSN-VGRCHDFRETADVIAKVAFKMYLGITP   80 (161)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CCSCCCHHHHHHHHHHTHHHHHHSCCC
T ss_pred             cccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhCcchhHHHHHHHHhhcC-CCccccHHHHHHHHHHHHHHHHcCCCc
Confidence            7999999999999999999999999999999999999999999999999875 689999999999999999999999999


Q ss_pred             cccccccCCCCE--EEEEcCCcccccceeccCCCCCcchhhhhHHHHHHHHhhCCCceEEEEEe-----CCceEEEEEec
Q psy8965         113 DKLERANDDERT--YYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW-----HKGTTYMIQFD  185 (193)
Q Consensus       113 D~L~~~tn~~g~--yvl~D~~pl~~~~is~P~~~~~l~~~~f~cGIIrGaL~~lG~~~~Vta~~-----~~~~~f~Ikf~  185 (193)
                      |+|+  +|++|+  |++.|+||+. +|+|+|++++.++|++|+||||||||+++||+|+|+++.     ++.|+++|||.
T Consensus        81 d~l~--~~~~~~~~~~i~~~npl~-~fv~lP~~~~~l~y~~f~cGiIrGaL~~~g~~~~V~~~~d~l~gd~~~~i~v~~~  157 (161)
T d1wc9a_          81 SITN--WSPAGDEFSLILENNPLV-DFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFI  157 (161)
T ss_dssp             EEEC--CCTTSCEEEEEESCCGGG-TTCCCCTTCTTCCTTTHHHHHHHHHHHTTTEEEEEEEEECGGGTCSSEEEEEEEE
T ss_pred             ccce--ecCCCCeEEEEecCCCcc-ceEEcCcccCCceehhhHHHHHHHHHHHCCCeEEEEEEecccCCCCceEEEEEEe
Confidence            9998  777774  5667778865 599999999999999999999999999999999999998     57899999998


Q ss_pred             hhh
Q psy8965         186 EQV  188 (193)
Q Consensus       186 ~~v  188 (193)
                      +.+
T Consensus       158 ~~~  160 (161)
T d1wc9a_         158 RRI  160 (161)
T ss_dssp             EEC
T ss_pred             eec
Confidence            764

>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: MJ1460-like
domain: Hypothetical protein MJ1460
species: Methanococcus jannaschii [TaxId: 2190]

Probab=95.68  E-value=0.011  Score=44.14  Aligned_cols=127  Identities=14%  Similarity=0.189  Sum_probs=71.8

Q ss_pred             CcccchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHhhhC
Q psy8965          30 VKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFG  109 (193)
Q Consensus        30 ~~~~Vs~s~f~~L~~EiV~~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~lFg  109 (193)
                      ....|+.+.|.++..+|..-+.....     ..-|-..||++|.++.++.            .-++.+|..+..|=.+-=
T Consensus        19 ~~~~ip~~~f~l~~~~l~d~l~~~~~-----~~iLY~aGk~lGr~~~~k~------------~eel~~ff~~~g~G~L~I   81 (152)
T d2osoa1          19 ESKKIPMPYFGLFALVIFDKVKELGS-----ETSLYEIGEEFGKMLSPKN------------IEELKKIFKLMNFGDLEI   81 (152)
T ss_dssp             HSCCCCHHHHHHHHHHHHHHHC--CC-----CCCHHHHHHHHHHHHCCSS------------HHHHHHHHHHHTCCEEEC
T ss_pred             HHhcCCHHHHHHHHHHHHHHhcccch-----HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHcCCceEEE
Confidence            33468899999999887765533222     2337778999988776543            346667766666643311


Q ss_pred             ccccccccccCCCCEEEEEcCCcccccceeccCCCCCcchhhhhHHHHHHHHhhC-CCceEEEEE-e----CCceEEEEE
Q psy8965         110 KECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNC-GFKSTVTAH-W----HKGTTYMIQ  183 (193)
Q Consensus       110 kqaD~L~~~tn~~g~yvl~D~~pl~~~~is~P~~~~~l~~~~f~cGIIrGaL~~l-G~~~~Vta~-~----~~~~~f~Ik  183 (193)
                      ...+-+    ..++.+.+.-.++....-.  +.   . .-++|.+|++.|+++.+ |-+..|.=. +    ++.|.|.|+
T Consensus        82 ~~~~~~----~~~~~~~~e~~~~~~~~g~--~~---~-pvC~~~~G~lag~~~~~~g~~~~v~E~~C~a~G~~~C~F~v~  151 (152)
T d2osoa1          82 DENKIL----LKNPPYKIKLSNPPYQWVS--KE---E-PIHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKCVFEVK  151 (152)
T ss_dssp             CHHHHH----HSCSCEEEEEESCSCTTCC--CS---S-CCCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSEEEEEE
T ss_pred             Eecccc----cccceEEEEEccChhhhCC--CC---C-CcchhhHHHHHHHHHHHhCCceEEEEeehhhCCCCceEEEEe
Confidence            111111    1234445544444322111  11   1 23578899999999885 444443211 1    789999986

>d1u55a_ d.278.1.1 (A:) Methyl-accepting chemotaxis protein {Thermoanaerobacter tengcongensis [TaxId: 119072]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: H-NOX domain
domain: Methyl-accepting chemotaxis protein
species: Thermoanaerobacter tengcongensis [TaxId: 119072]

Probab=90.78  E-value=2.4  Score=31.71  Aligned_cols=114  Identities=17%  Similarity=0.172  Sum_probs=69.8

Q ss_pred             HHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHhhhCccccccccccCCCCEEEEEcCCcccccceec
Q psy8965          61 QSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISV  140 (193)
Q Consensus        61 ~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~lFgkqaD~L~~~tn~~g~yvl~D~~pl~~~~is~  140 (193)
                      ++-|+..|...=.++.+.+...-+ .....++|.-|.-|+..+=+.+=+-..-..+        +.-.+.+-+...|-| 
T Consensus        64 ~~ll~~fG~~~~~~~~~~y~~~~~-g~~~~dFL~~ld~iH~~v~~~yp~~~~P~f~--------~~~~~~~~l~l~Y~S-  133 (188)
T d1u55a_          64 NEIWREVGRQNIKTFSEWFPSYFA-GRRLVNFLMMMDEVHLQLTKMIKGATPPRLI--------AKPVAKDAIEMEYVS-  133 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHSGGGTT-TCCHHHHHHHHHHHHHHHHTTSTTCCCCBCC--------EEEEETTEEEEEEEE-
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhc-CCCHHHHHHhhhhHHHHHHHhCCCCCCCeEE--------EEECCCCEEEEEEEe-
Confidence            345788887765566664321122 2467788888888887763332111111111        122333334445666 


Q ss_pred             cCCCCCcchhhhhHHHHHHHHhhCCCceEEEEEe------CCceEEEEEechhhh
Q psy8965         141 PKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW------HKGTTYMIQFDEQVI  189 (193)
Q Consensus       141 P~~~~~l~~~~f~cGIIrGaL~~lG~~~~Vta~~------~~~~~f~Ikf~~~v~  189 (193)
                      +.     ....|+.|+|+|+-+..|-+.+|....      ...++|+|+|+..+-
T Consensus       134 ~R-----~l~~~~~Gli~g~A~~f~~~i~I~~~~~~~~~~~~~~~~~i~f~n~~~  183 (188)
T d1u55a_         134 KR-----KMYDYFLGLIEGSSKFFKEEISVEEVERGEKDGFSRLKVRIKFKNPVF  183 (188)
T ss_dssp             TT-----CCHHHHHHHHHHHHHHHTCCEEEEEEEEEEETTEEEEEEEEEESSCCC
T ss_pred             CC-----ChHHHHHHHHHHHHHHhCCceEEEEeeccccCCccEEEEEEEEEchhh
Confidence            22     246899999999999999998887632      246899999987654