Psyllid ID: psy9001
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1351 | 2.2.26 [Sep-21-2011] | |||||||
| Q6T308 | 699 | 1,4-alpha-glucan-branchin | N/A | N/A | 0.262 | 0.506 | 0.466 | 7e-97 | |
| Q6EAS5 | 699 | 1,4-alpha-glucan-branchin | yes | N/A | 0.262 | 0.506 | 0.464 | 7e-97 | |
| Q04446 | 702 | 1,4-alpha-glucan-branchin | yes | N/A | 0.262 | 0.504 | 0.455 | 1e-95 | |
| Q9D6Y9 | 702 | 1,4-alpha-glucan-branchin | yes | N/A | 0.262 | 0.504 | 0.459 | 2e-95 | |
| Q8NKE1 | 683 | 1,4-alpha-glucan-branchin | N/A | N/A | 0.251 | 0.497 | 0.438 | 8e-88 | |
| Q6CCT1 | 691 | 1,4-alpha-glucan-branchin | yes | N/A | 0.254 | 0.497 | 0.408 | 1e-85 | |
| O23647 | 858 | 1,4-alpha-glucan-branchin | yes | N/A | 0.248 | 0.391 | 0.418 | 1e-82 | |
| Q9LZS3 | 805 | 1,4-alpha-glucan-branchin | no | N/A | 0.248 | 0.417 | 0.416 | 1e-79 | |
| Q08047 | 799 | 1,4-alpha-glucan-branchin | N/A | N/A | 0.283 | 0.479 | 0.382 | 8e-78 | |
| Q6BXN1 | 711 | 1,4-alpha-glucan-branchin | yes | N/A | 0.256 | 0.486 | 0.406 | 9e-77 |
| >sp|Q6T308|GLGB_FELCA 1,4-alpha-glucan-branching enzyme OS=Felis catus GN=GBE1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 356 bits (914), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 203/435 (46%), Positives = 253/435 (58%), Gaps = 81/435 (18%)
Query: 62 VDECHKAGLLC-----FMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLT 116
V C GL C V GDFN+WN + YKKLD+GKWEL +PP + S +
Sbjct: 75 VHRCADGGLYCKEWAPGAEGVFLTGDFNDWNPFSYPYKKLDYGKWELYIPPKQNKSQLVP 134
Query: 117 HLSQVKLVVRNQHGHLLDRLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKK 175
H S++K+V+R++ G +L R+SPWA YVT E V Y+ W+ P+ +K+ S+PKK
Sbjct: 135 HGSKLKVVIRSKSGEILYRISPWAKYVTREGENVN--YDWTHWD--PEHPYKFKHSRPKK 190
Query: 176 PDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMG 235
P ++IYESHVGI + E K ASY+ F V+PRI KD +N
Sbjct: 191 PRGVRIYESHVGISSYEGKIASYKHFTYNVLPRI------------------KDLGYNCI 232
Query: 236 NIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACE 295
++ + + Y A G + +F+ A
Sbjct: 233 QMMAIMEHAYY-------------ASFGYQITSFFA---------------------ASS 258
Query: 296 KFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 355
++GTPE+ LK LVD H G+ VLLDVVHSHASKN DGLN
Sbjct: 259 RYGTPEE-------------------LKELVDTAHSMGITVLLDVVHSHASKNSEDGLNM 299
Query: 356 FDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415
FDGT +C+FH GPRG H LWDSRLF YS EVLRFLLSN+RW+L+EY FDGFRFDGVTSM
Sbjct: 300 FDGTDSCYFHSGPRGNHDLWDSRLFIYSSWEVLRFLLSNIRWWLEEYGFDGFRFDGVTSM 359
Query: 416 LYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCR 475
LYH+HG G+ FSG Y EYFGL VD DALIYLM+AN +H YP ITIAEDVSGMPA C
Sbjct: 360 LYHHHGMGQAFSGDYHEYFGLQVDEDALIYLMLANHLVHTLYPNSITIAEDVSGMPALCS 419
Query: 476 PVTEGGTGFDYRLEI 490
P+++GG GFDYRL +
Sbjct: 420 PISQGGVGFDYRLAM 434
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Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells. Felis catus (taxid: 9685) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 8 |
| >sp|Q6EAS5|GLGB_HORSE 1,4-alpha-glucan-branching enzyme OS=Equus caballus GN=GBE1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (914), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 202/435 (46%), Positives = 252/435 (57%), Gaps = 81/435 (18%)
Query: 62 VDECHKAGLLC-----FMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLT 116
V C GL C V GDFN+WN + YKKLD+GKW+L +PP P+ S +
Sbjct: 75 VHRCADGGLYCKEWAPGAEGVFLTGDFNDWNPFSYPYKKLDYGKWDLYIPPKPNKSLLVP 134
Query: 117 HLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHA-YEQRIWNPKPQDKHKWTSSKPKK 175
H S++K+V+R++ G +L R+SPWA YV G+ Y+ W+ P+ +K+ S+PKK
Sbjct: 135 HGSKLKVVIRSKSGEILYRISPWAKYVVRES--GNVNYDWIHWD--PEQPYKFKHSRPKK 190
Query: 176 PDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMG 235
P +L+IYESHVGI + E K ASY+ F V+PRI G
Sbjct: 191 PRSLRIYESHVGISSHEGKIASYKHFTCNVLPRIKGLGY--------------------- 229
Query: 236 NIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACE 295
N + + +A E A G + +F+ A
Sbjct: 230 NCI----------QMMAIMEHAYYASFGYQITSFFA---------------------ASS 258
Query: 296 KFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 355
++GTPE+ LK LVD H G+ VLLDVVHSHASKN DGLN
Sbjct: 259 RYGTPEE-------------------LKELVDTAHSMGITVLLDVVHSHASKNSEDGLNM 299
Query: 356 FDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415
FDGT +C+FH GPRGTH LWDSRLF YS EVLRFLLSN+RW+L+EY FDGFRFDGVTSM
Sbjct: 300 FDGTDSCYFHSGPRGTHDLWDSRLFIYSSWEVLRFLLSNIRWWLEEYGFDGFRFDGVTSM 359
Query: 416 LYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCR 475
LYH+HG G FSG Y EYFGL VD DAL YLM+AN +H YP+ ITIAEDVSGMPA C
Sbjct: 360 LYHHHGIGASFSGDYHEYFGLQVDEDALTYLMLANHLVHTLYPDSITIAEDVSGMPALCS 419
Query: 476 PVTEGGTGFDYRLEI 490
P+++GG GFDYRL +
Sbjct: 420 PISQGGGGFDYRLAM 434
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Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells. Equus caballus (taxid: 9796) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q04446|GLGB_HUMAN 1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 352 bits (903), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 198/435 (45%), Positives = 252/435 (57%), Gaps = 81/435 (18%)
Query: 62 VDECHKAGLLC-----FMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLT 116
V C GL C V GDFN WN + YKKLD+GKWEL +PP + S +
Sbjct: 78 VHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYGKWELYIPPKQNKSVLVP 137
Query: 117 HLSQVKLVVRNQHGHLLDRLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKK 175
H S++K+V+ ++ G +L R+SPWA YV E V Y+ W+ P+ +++ S+PKK
Sbjct: 138 HGSKLKVVITSKSGEILYRISPWAKYVVREGDNVN--YDWIHWD--PEHSYEFKHSRPKK 193
Query: 176 PDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMG 235
P +L+IYESHVGI + E K ASY+ F V+PRI G +N
Sbjct: 194 PRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLG------------------YNCI 235
Query: 236 NIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACE 295
++ + + Y A G + +F+ A
Sbjct: 236 QLMAIMEHAYY-------------ASFGYQITSFF---------------------AASS 261
Query: 296 KFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 355
++GTPE+L+ LVD H G+ VLLDVVHSHASKN DGLN
Sbjct: 262 RYGTPEELQELVDTAHSMGII-------------------VLLDVVHSHASKNSADGLNM 302
Query: 356 FDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415
FDGT +C+FH GPRGTH LWDSRLF YS E+LRFLLSN+RW+L+EY+FDGFRFDGVTSM
Sbjct: 303 FDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEILRFLLSNIRWWLEEYRFDGFRFDGVTSM 362
Query: 416 LYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCR 475
LYH+HG G+GFSG Y EYFGL VD DAL YLM+AN +H P+ ITIAEDVSGMPA C
Sbjct: 363 LYHHHGVGQGFSGDYSEYFGLQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPALCS 422
Query: 476 PVTEGGTGFDYRLEI 490
P+++GG GFDYRL +
Sbjct: 423 PISQGGGGFDYRLAM 437
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Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q9D6Y9|GLGB_MOUSE 1,4-alpha-glucan-branching enzyme OS=Mus musculus GN=Gbe1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 351 bits (900), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 200/435 (45%), Positives = 252/435 (57%), Gaps = 81/435 (18%)
Query: 62 VDECHKAGLLC-----FMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLT 116
+ C G+ C V G+F+ WN YKKL++GKWEL +PP + S +
Sbjct: 78 IHRCSDGGIYCKEWAPGAEGVFLTGEFSGWNPFSHPYKKLEYGKWELYIPPKQNKSPLIP 137
Query: 117 HLSQVKLVVRNQHGHLLDRLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKK 175
H S++K+V+ ++ G +L R+SPWA YV E V Y+ W P+D +K+ S+PKK
Sbjct: 138 HGSKLKVVITSKSGEILYRISPWAKYVVRENNNVN--YDWIHW--APEDPYKFKHSRPKK 193
Query: 176 PDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMG 235
P +L+IYESHVGI + E K ASY+ F V+PRI KD +N
Sbjct: 194 PRSLRIYESHVGISSHEGKIASYKHFTSNVLPRI------------------KDLGYNCI 235
Query: 236 NIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACE 295
++ + + Y A G + +F+ A
Sbjct: 236 QLMAIMEHAYY-------------ASFGYQITSFF---------------------AASS 261
Query: 296 KFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 355
++GTPE+LK LVD H G+ VLLDVVHSHASKN DGLN
Sbjct: 262 RYGTPEELKELVDTAHSMGIV-------------------VLLDVVHSHASKNSEDGLNM 302
Query: 356 FDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415
FDGT +C+FH GPRGTH LWDSRLF YS EVLRFLLSN+RW+L+EY FDGFRFDGVTSM
Sbjct: 303 FDGTDSCYFHSGPRGTHDLWDSRLFIYSSWEVLRFLLSNIRWWLEEYCFDGFRFDGVTSM 362
Query: 416 LYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCR 475
LYH+HG G+GFSG Y+EYFGL VD DALIYLM+AN H YP+ ITIAEDVSGMPA C
Sbjct: 363 LYHHHGMGQGFSGDYNEYFGLQVDEDALIYLMLANHLAHTLYPDSITIAEDVSGMPALCS 422
Query: 476 PVTEGGTGFDYRLEI 490
P ++GG GFDYRL +
Sbjct: 423 PTSQGGGGFDYRLAM 437
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Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q8NKE1|GLGB_GLOIN 1,4-alpha-glucan-branching enzyme OS=Glomus intraradices GN=GLC3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 326 bits (836), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 182/415 (43%), Positives = 237/415 (57%), Gaps = 75/415 (18%)
Query: 81 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140
G+FN+W+R + KK FG WE+ +P +G + H +++K+ + G +DRL W
Sbjct: 87 GEFNDWDRSKHPMKKDSFGVWEVHIPAK-NGIPTIPHNTKIKISMTTPEGECIDRLPAWI 145
Query: 141 TYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYED 200
VT+ V AY+ WNP PQ K++W ++ PKKP +L+IYE+HVGI T E + +Y +
Sbjct: 146 KRVTQDLNVSLAYDAIFWNP-PQ-KYQWKNNSPKKPTSLRIYEAHVGISTNEGRVGTYNE 203
Query: 201 FVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQA 260
F V LK+ KD +N ++ + + Y A
Sbjct: 204 FTDNV------------------LKRIKDLGYNAIQLMAIMEHAYY-------------A 232
Query: 261 LVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPE 320
G + +F FG + +GTPE
Sbjct: 233 SFGYQVTSF---------------------------FGVSSR-------------YGTPE 252
Query: 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLF 380
+L L+D H GLYVLLDVVHSHA KNVLDGLN FDG+ C+FH+G +G H LWDSRLF
Sbjct: 253 ELMRLIDTAHGMGLYVLLDVVHSHACKNVLDGLNMFDGSDHCYFHEGGKGRHDLWDSRLF 312
Query: 381 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT 440
NY EVLRFLLSNLR++++EY+FDGFRFDGVTSM+YH+HG G GFSG Y EYFG VD
Sbjct: 313 NYGHWEVLRFLLSNLRFFMEEYRFDGFRFDGVTSMMYHHHGIGTGFSGGYHEYFGDTVDE 372
Query: 441 DALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PDM 494
++YLM+AN LH YP IIT++EDVSGMP C PV EGG GFDYRL + PDM
Sbjct: 373 GGVVYLMLANDMLHKLYPRIITVSEDVSGMPGLCLPVEEGGIGFDYRLAMAIPDM 427
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Glomus intraradices (taxid: 4876) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q6CCT1|GLGB_YARLI 1,4-alpha-glucan-branching enzyme OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GLC3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 318 bits (816), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 174/426 (40%), Positives = 237/426 (55%), Gaps = 82/426 (19%)
Query: 80 AGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 139
GDFN W+R+++ + ++G W + +PP DG + H S+VKL ++ +G +DRL W
Sbjct: 74 TGDFNGWDRQQYHMTRDEYGLWSVTVPPTSDGQVAIPHNSKVKLALKTSNGQWVDRLPAW 133
Query: 140 ATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 199
+TYV + YE WNP +K++W + P P N +IYE+HVGI + E + +Y+
Sbjct: 134 STYVVQDLSKSPIYEAVFWNPPESEKYQWKNKSPPTPANAQIYEAHVGISSSEPRVGTYK 193
Query: 200 DFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 259
+F + ++PRI K G + I+L+ A E
Sbjct: 194 EFTKNILPRIHKLGYNV----IQLM---------------------------AIMEHAYY 222
Query: 260 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTP 319
A G + +F+ + ++GTPE
Sbjct: 223 ASFGYQVTSFYAI---------------------SSRYGTPE------------------ 243
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 379
LK L+D H G+ VLLDVVHSHA KNV DGLN FDGT +FH G +G HP WDS+L
Sbjct: 244 -DLKELIDTAHGMGITVLLDVVHSHACKNVDDGLNNFDGTDHQYFHGGAKGDHPQWDSKL 302
Query: 380 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG-LNV 438
F+Y + EVLRFLLSNLR+Y++EY FDGFRFDGVTSMLY +HG G GFSG Y EYFG +V
Sbjct: 303 FDYGKYEVLRFLLSNLRFYIEEYHFDGFRFDGVTSMLYKHHGLGTGFSGGYHEYFGDEHV 362
Query: 439 DTDALIYLMVANKFLHDKYP---------EIITIAEDVSGMPASCRPVTEGGTGFDYRLE 489
D A++YLM+A++ + + P ++IAEDVSGMPA CRPV+EGG GFDYRL
Sbjct: 363 DQQAVVYLMLAHELMRELQPLLRPGEDAGNFLSIAEDVSGMPALCRPVSEGGVGFDYRLA 422
Query: 490 IR-PDM 494
+ PDM
Sbjct: 423 MAIPDM 428
|
Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|O23647|GLGB1_ARATH 1,4-alpha-glucan-branching enzyme 2-1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SBE2.1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 309 bits (791), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 172/411 (41%), Positives = 228/411 (55%), Gaps = 75/411 (18%)
Query: 81 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140
GDFNNWN + + DFG WE+ LP N DGS + H S+VK+ + G + D + W
Sbjct: 230 GDFNNWNAKSDVMARNDFGVWEIFLPNNADGSPAIPHGSRVKIRMDTPSG-IKDSIPAWI 288
Query: 141 TYVTEPPVVGHA-YEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 199
Y +PP G Y ++P +DK+ + +PKKP +L+IYESHVG+ + E K +Y
Sbjct: 289 KYSVQPP--GEIPYNGVYYDPPEEDKYAFKHPRPKKPTSLRIYESHVGMSSTEPKINTYA 346
Query: 200 DFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 259
+F V+PRI K G N V + +++ YA
Sbjct: 347 NFRDDVLPRIKKLGY---------------------NAVQIMA----IQEHAYYA----- 376
Query: 260 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTP 319
H++ PS +FGTP+ LK L+D+ H+ GL
Sbjct: 377 ---------------SFGYHVTNFFAPS-------SRFGTPDDLKSLIDKAHELGLV--- 411
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 379
VL+D+VHSHASKN LDGL+ FDGT +FH G RG H +WDSRL
Sbjct: 412 ----------------VLMDIVHSHASKNTLDGLDMFDGTDGQYFHSGSRGYHWMWDSRL 455
Query: 380 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 439
FNY EVLR+LLSN RW+L+EY+FDGFRFDGVTSM+Y +HG F+G+Y+EYFG + D
Sbjct: 456 FNYGSWEVLRYLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVEFTGNYNEYFGYSTD 515
Query: 440 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEI 490
DA++YLM+ N +H YPE I + EDVSGMPA C PV +GG GFDYRL +
Sbjct: 516 VDAVVYLMLVNDLIHGLYPEAIVVGEDVSGMPAFCVPVEDGGVGFDYRLHM 566
|
Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q9LZS3|GLGB2_ARATH 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SBE2.2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 299 bits (765), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 171/411 (41%), Positives = 224/411 (54%), Gaps = 75/411 (18%)
Query: 81 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140
GDFNNWN + +FG WE+ LP N DGS + H S+VK+ + G + D + W
Sbjct: 195 GDFNNWNSNADIMTRNEFGVWEIFLPNNTDGSPAIPHGSRVKIRMDTPSG-IKDSIPAWI 253
Query: 141 TYVTEPPVVGHA-YEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 199
+ + P G + ++P ++K+ + +PK+P +L+IYE+HVG+ + E +Y
Sbjct: 254 KFSVQAP--GEIPFNGIYYDPPEEEKYVFKHPQPKRPKSLRIYEAHVGMSSTEPMVNTYA 311
Query: 200 DFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 259
+F V+PRI K G N V + A E
Sbjct: 312 NFRDDVLPRIKKLGY---------------------NAVQIM----------AIQEHSYY 340
Query: 260 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTP 319
A G H++ PS + GTPE+LK L+D H+ GL
Sbjct: 341 ASFG--------------YHVTNFFAPS-------SRCGTPEELKSLIDRAHELGLV--- 376
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 379
VL+D+VHSHASKN LDGLN FDGT A +FH GPRG H +WDSRL
Sbjct: 377 ----------------VLMDIVHSHASKNTLDGLNMFDGTDAHYFHSGPRGYHWMWDSRL 420
Query: 380 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 439
FNY EVLR+LLSN RW+L+EY+FDGFRFDGVTSM+Y +HG GF+G+Y EYFGL D
Sbjct: 421 FNYGSWEVLRYLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLSVGFTGNYTEYFGLETD 480
Query: 440 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEI 490
DA+ YLM+ N +H YPE IT+ EDVSGMP C PV +GG GFDYRL +
Sbjct: 481 VDAVNYLMLVNDMIHGLYPEAITVGEDVSGMPTFCIPVQDGGVGFDYRLHM 531
|
Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q08047|GLGB_MAIZE 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic OS=Zea mays GN=SBE1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (749), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 180/471 (38%), Positives = 239/471 (50%), Gaps = 88/471 (18%)
Query: 77 VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 136
GD NNW+ K +FG WE+ LP N DG+ + H S+VK+ + G + D +
Sbjct: 187 AALVGDVNNWDPNADRMSKNEFGVWEIFLPNNADGTSPIPHGSRVKVRMDTPSG-IKDSI 245
Query: 137 SPWATYVTEPPVVGHA-YEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKC 195
W Y + P G Y+ ++P + K+ + ++PK+P +L+IYE+HVG+ + E K
Sbjct: 246 PAWIKYSVQAP--GEIPYDGIYYDPPEEVKYVFRHAQPKRPKSLRIYETHVGMSSPEPKI 303
Query: 196 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 255
+Y +F V+PRI K G +N I+ + Y + Y
Sbjct: 304 NTYVNFRDEVLPRIKKLG------------------YNAVQIMAIQEHSYY--GSFGY-- 341
Query: 256 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGL 315
H++ PS +FGTPE LK L+D H+ GL
Sbjct: 342 -----------------------HVTNFFAPS-------SRFGTPEDLKSLIDRAHELGL 371
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
VL+DVVHSHAS N LDGLN FDGT +FH GPRG H +W
Sbjct: 372 L-------------------VLMDVVHSHASSNTLDGLNGFDGTDTHYFHSGPRGHHWMW 412
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
DSRLFNY EVLRFLLSN RW+L+EY+FDGFRFDGVTSM+Y +HG F+G+++EYFG
Sbjct: 413 DSRLFNYGNWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVTFTGNFNEYFG 472
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIRP--- 492
D DA++YLM+ N +H YPE +TI EDVSGMP PV +GG GFDYR+ +
Sbjct: 473 FATDVDAVVYLMLVNDLIHGLYPEAVTIGEDVSGMPTFALPVHDGGVGFDYRMHMAVADK 532
Query: 493 -----DMSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHE---GDKVIIF 535
SD T D T R WL Y + + GDK I F
Sbjct: 533 WIDLLKQSDETWKMGDIVHTLTNRR--WLEKCVTYAESHDQALVGDKTIAF 581
|
Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Zea mays (taxid: 4577) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q6BXN1|GLGB_DEBHA 1,4-alpha-glucan-branching enzyme OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GLC3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (740), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 174/428 (40%), Positives = 224/428 (52%), Gaps = 82/428 (19%)
Query: 77 VCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 135
V GDFNNW+ K + DFG W L + P + + H S+ K+ + G + R
Sbjct: 89 VSLVGDFNNWDTNTHKLKPVNDFGLWSLTIKPTENNEFAVPHDSRYKISMVTASGERIYR 148
Query: 136 LSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK--KPDNLKIYESHVGICTQEQ 193
L PW T P + YE R WNP+P + +K+ +P+ D +KIYE+HVGI T E
Sbjct: 149 LCPWLKRAT-PSTENNLYEGRFWNPQPTETYKFKHERPRLESKDGIKIYEAHVGISTPEP 207
Query: 194 KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 253
K SY++F V+P I K G I+L+ A
Sbjct: 208 KVGSYKNFTTKVLPVIHKLGYNT----IQLM---------------------------AV 236
Query: 254 AESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKA 313
E A G + F+ + +FGTPE LK L
Sbjct: 237 MEHAYYASFGYQVTNFFAI---------------------SSRFGTPEDLKEL------- 268
Query: 314 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP 373
+DE H+ G+ VLLDVVHSH+SKNV DGLN F+GT FH G +G+H
Sbjct: 269 ------------IDEAHRLGIRVLLDVVHSHSSKNVEDGLNMFNGTDHYLFHGGTKGSHE 316
Query: 374 LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 433
LWDSRLFNYS E LRFLLSNLR+Y+D ++FDGFRFDGVTSMLY +HG GFSG Y+EY
Sbjct: 317 LWDSRLFNYSNYETLRFLLSNLRFYIDVFKFDGFRFDGVTSMLYKHHGLSFGFSGDYNEY 376
Query: 434 FGLN-VDTDALIYLMVANKFL-----HDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 487
F VD DA+ YLM+ +K L + + ++IAEDVSGMP C P+ +GG GFDYR
Sbjct: 377 FNSEWVDNDAITYLMLGHKLLDEISVRENNYKFVSIAEDVSGMPTLCLPIGQGGIGFDYR 436
Query: 488 LEIR-PDM 494
L + PDM
Sbjct: 437 LSMAIPDM 444
|
Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1351 | ||||||
| 380026836 | 694 | PREDICTED: LOW QUALITY PROTEIN: 1,4-alph | 0.282 | 0.548 | 0.491 | 1e-116 | |
| 350410058 | 692 | PREDICTED: 1,4-alpha-glucan-branching en | 0.281 | 0.549 | 0.486 | 1e-116 | |
| 383863554 | 692 | PREDICTED: 1,4-alpha-glucan-branching en | 0.282 | 0.550 | 0.489 | 1e-115 | |
| 307197707 | 596 | 1,4-alpha-glucan-branching enzyme [Harpe | 0.283 | 0.642 | 0.494 | 1e-113 | |
| 322785359 | 691 | hypothetical protein SINV_12923 [Solenop | 0.284 | 0.555 | 0.477 | 1e-113 | |
| 332023850 | 697 | 1,4-alpha-glucan-branching enzyme [Acrom | 0.282 | 0.548 | 0.473 | 1e-112 | |
| 91076104 | 692 | PREDICTED: similar to GA17312-PA [Tribol | 0.282 | 0.550 | 0.479 | 1e-111 | |
| 195124622 | 690 | GI21261 [Drosophila mojavensis] gi|19391 | 0.286 | 0.560 | 0.477 | 1e-111 | |
| 156548680 | 694 | PREDICTED: 1,4-alpha-glucan-branching en | 0.285 | 0.556 | 0.475 | 1e-111 | |
| 198458865 | 690 | GA17312 [Drosophila pseudoobscura pseudo | 0.285 | 0.559 | 0.470 | 1e-110 |
| >gi|380026836|ref|XP_003697146.1| PREDICTED: LOW QUALITY PROTEIN: 1,4-alpha-glucan-branching enzyme-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 231/470 (49%), Positives = 282/470 (60%), Gaps = 89/470 (18%)
Query: 80 AGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 139
GDFN WNR +YKKLD+GKWEL LPPN DGSC + HLS++K++V++Q+ LL+RLSPW
Sbjct: 91 TGDFNGWNRTTNSYKKLDYGKWELHLPPNADGSCPIKHLSEIKIIVKDQNNELLERLSPW 150
Query: 140 ATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 199
ATYVT+ Y+QRIW P P++ +K+ SK KKP++L+IYE HVGI TQE K +Y
Sbjct: 151 ATYVTQDKSESATYKQRIWYPLPENVYKFKYSKQKKPESLRIYECHVGIATQELKIGTYL 210
Query: 200 DFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 259
+F + +IPRIVKQG I+L+ A E
Sbjct: 211 EFAKNIIPRIVKQGYNA----IQLM---------------------------AIMEHAYY 239
Query: 260 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTP 319
A G + +F+ A ++GTPE+LK
Sbjct: 240 ASFGYQVTSFY---------------------AASSRYGTPEELK--------------- 263
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 379
L+D H+ GLYVLLDVVHSHASKN LDGLN FDGT CFFH G RG HPLWDSRL
Sbjct: 264 ----QLIDTAHQYGLYVLLDVVHSHASKNTLDGLNMFDGTDGCFFHSGNRGHHPLWDSRL 319
Query: 380 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 439
FNY E EVLRFLLSNLRWY++EY FDGFRFDGVTSMLYH+ G G+GF+GHY+EY+GLNVD
Sbjct: 320 FNYGEYEVLRFLLSNLRWYIEEYNFDGFRFDGVTSMLYHSRGFGQGFTGHYEEYYGLNVD 379
Query: 440 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PDM---- 494
+ ++YLM+AN LH YP +ITIAEDVSGMP CRP+TEGG GFDYRL + PD
Sbjct: 380 VEGVVYLMLANYILHYLYPNMITIAEDVSGMPGVCRPITEGGLGFDYRLAMAIPDKWIKL 439
Query: 495 ------SDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHE---GDKVIIF 535
D VG D T R W+ Y + + GDK I F
Sbjct: 440 LKEXKDEDWNVG--DICWTLTNRR--WMEKTVAYSESHDQALVGDKTIAF 485
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350410058|ref|XP_003488932.1| PREDICTED: 1,4-alpha-glucan-branching enzyme-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 228/469 (48%), Positives = 284/469 (60%), Gaps = 89/469 (18%)
Query: 81 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140
GDFN WN+ +YKKLD+GKWEL LPPN DGSC + HLS+VK++V++ + LL+RLSPWA
Sbjct: 92 GDFNGWNKTANSYKKLDYGKWELHLPPNADGSCPIKHLSEVKIIVKDHNNELLERLSPWA 151
Query: 141 TYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYED 200
TYVT+ Y+QRIW+P ++ +K+ SKPKKP++L+IYE HVGI T+E K +Y +
Sbjct: 152 TYVTQNRAESVTYKQRIWHPSSENVYKFKYSKPKKPESLRIYECHVGIATEELKVGTYLE 211
Query: 201 FVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQA 260
F +IPRIVKQG I+L+ A E A
Sbjct: 212 FAEKIIPRIVKQGYNA----IQLM---------------------------AIMEHAYYA 240
Query: 261 LVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPE 320
G + +F+ A ++GTPE+LK
Sbjct: 241 SFGYQVTSFY---------------------AASSRYGTPEELK---------------- 263
Query: 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLF 380
L+D H+ GLYVLLD+V SHASKN LDGLN FDGT ACFFH G RG HPLWDSRLF
Sbjct: 264 ---QLIDTAHQHGLYVLLDMVQSHASKNTLDGLNMFDGTDACFFHAGNRGQHPLWDSRLF 320
Query: 381 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT 440
NY E EVLRFLLSNLRWY++EY FDGFRFDGVTSMLYH+ G G+GFSGHYDEY+GLNVD
Sbjct: 321 NYGEYEVLRFLLSNLRWYIEEYNFDGFRFDGVTSMLYHSRGFGQGFSGHYDEYYGLNVDV 380
Query: 441 DALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PDM----- 494
+ ++YLM+AN LH YPEI+TIAEDVSGMP CRP+TEGG GFDYRL + PD
Sbjct: 381 EGVVYLMLANHMLHCLYPEIVTIAEDVSGMPGVCRPITEGGIGFDYRLAMAIPDKWIKLL 440
Query: 495 -----SDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHE---GDKVIIF 535
D ++G A++ +W+ Y + + GDK I F
Sbjct: 441 KEVRDEDWSIGDICWALSNR----RWMEKTVAYSESHDQALVGDKTIAF 485
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383863554|ref|XP_003707245.1| PREDICTED: 1,4-alpha-glucan-branching enzyme-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1091), Expect = e-115, Method: Compositional matrix adjust.
Identities = 230/470 (48%), Positives = 283/470 (60%), Gaps = 89/470 (18%)
Query: 80 AGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 139
GDFNNWN+ +YKKL++GKWEL LPPN DGSC + HLS+VK++V++ + LL+RLSPW
Sbjct: 91 TGDFNNWNKTANSYKKLEYGKWELYLPPNADGSCPIKHLSEVKIIVKDHNNELLERLSPW 150
Query: 140 ATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 199
A YVT+ Y+QRIW+P ++ +++ KPKKP++L+IYE HVGI TQE K +Y
Sbjct: 151 ANYVTQNRAESATYKQRIWHPLSKNTYRFKYPKPKKPESLRIYECHVGIATQELKVGTYL 210
Query: 200 DFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 259
+F + VIPRIVKQG I+L+ A E
Sbjct: 211 EFAKNVIPRIVKQGYNA----IQLM---------------------------AIMEHAYY 239
Query: 260 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTP 319
A G + +F+ A ++GTPE+LK L+D H+ GLF
Sbjct: 240 ASFGYQVTSFY---------------------AASSRYGTPEELKELIDVAHEHGLF--- 275
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 379
VLLD+VHSHASKN LDGLN FDGT CFFH G RG HPLWDSRL
Sbjct: 276 ----------------VLLDMVHSHASKNTLDGLNMFDGTDGCFFHAGNRGQHPLWDSRL 319
Query: 380 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 439
FNY E EVLRFLLSNLRWY+DEY FDGFRFDGVTSMLYH+ G G+GFSGHYDEY+GLNVD
Sbjct: 320 FNYGEYEVLRFLLSNLRWYIDEYGFDGFRFDGVTSMLYHSRGFGQGFSGHYDEYYGLNVD 379
Query: 440 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PDM---- 494
+ ++YLM+AN LH YPEI+TIAEDVSGMP CRPV+EGG GFDYRL + PD
Sbjct: 380 VEGVVYLMLANHMLHHLYPEIVTIAEDVSGMPGVCRPVSEGGVGFDYRLGMSIPDKWIKL 439
Query: 495 ------SDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHE---GDKVIIF 535
D VG D + + R W+ Y + + GDK I F
Sbjct: 440 LKEVKDEDWKVG--DICWSLSNRR--WMEKTVAYAESHDQALVGDKTIAF 485
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307197707|gb|EFN78864.1| 1,4-alpha-glucan-branching enzyme [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 235/475 (49%), Positives = 287/475 (60%), Gaps = 92/475 (19%)
Query: 77 VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 136
V GDFNNWNR +KKL++GKWEL LPPN DGSC + HLS+VK++++N H LL+RL
Sbjct: 88 VFLTGDFNNWNRTVTPFKKLEYGKWELRLPPNIDGSCSIKHLSEVKIIIKN-HNELLERL 146
Query: 137 SPWATYVTEPP--VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQK 194
SPWATYVT+P G Y+QRIW+P P++ +K+ KPKKP++L+IYE HVGI TQE +
Sbjct: 147 SPWATYVTQPADKSEGTTYKQRIWHPSPENVYKFKHPKPKKPESLRIYECHVGISTQELR 206
Query: 195 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 254
+Y +F + +IPRI+KQG I+L+ A
Sbjct: 207 VGTYLEFAKNIIPRIIKQGYNA----IQLM---------------------------AIM 235
Query: 255 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAG 314
E A G + +F+ A ++GTPE+L
Sbjct: 236 EHAYYASFGYQVTSFY---------------------AASSRYGTPEEL----------- 263
Query: 315 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL 374
K L+D H+ GLYVLLDVVHSHASKN LDGLN FDGT ACFFH G RG HPL
Sbjct: 264 --------KELIDVAHQHGLYVLLDVVHSHASKNTLDGLNMFDGTDACFFHSGCRGEHPL 315
Query: 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 434
WDSRLFNY E EVLRFLLSNLRWY++EY FDGFRFDG+TSMLYH+ G G+GFSGHYDEY+
Sbjct: 316 WDSRLFNYGEYEVLRFLLSNLRWYIEEYGFDGFRFDGITSMLYHSRGFGQGFSGHYDEYY 375
Query: 435 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PD 493
GLNVD + ++YLM+AN LHD YPE+ITIAEDVSGMP CRPV EGG GFDYRL + PD
Sbjct: 376 GLNVDVEGVVYLMIANHMLHDIYPEMITIAEDVSGMPGICRPVAEGGVGFDYRLAMAIPD 435
Query: 494 M----------SDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHE---GDKVIIF 535
D VG D + R W+ Y + + GDK I F
Sbjct: 436 KWIKLLKEVKDEDWNVG--DICWTLSNRR--WMEKSIAYSESHDQALVGDKTIAF 486
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322785359|gb|EFZ12033.1| hypothetical protein SINV_12923 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 226/473 (47%), Positives = 284/473 (60%), Gaps = 89/473 (18%)
Query: 77 VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 136
V G+FNNW + YKKL++GKWEL LPPN DGSC L H S+VKL++++ + LL+RL
Sbjct: 88 VFLTGEFNNWQKTAVPYKKLEYGKWELHLPPNTDGSCPLKHNSEVKLIIKSHNNELLERL 147
Query: 137 SPWATYVTEPP--VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQK 194
SPWATYVT+ P G Y+QRIW+ P++++K+ KPK+P++L+IYE HVGI TQE +
Sbjct: 148 SPWATYVTQKPDKSEGTTYKQRIWH--PENRYKFKHPKPKRPESLRIYECHVGIATQEFR 205
Query: 195 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 254
+Y +F R VIPRIV+QG +N ++ + + Y
Sbjct: 206 VGTYLEFARDVIPRIVRQG------------------YNTIQVMAIMEHAYY-------- 239
Query: 255 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAG 314
A G + +F+ + ++G PE+L
Sbjct: 240 -----ASFGYQVTSFYAV---------------------SSRYGNPEEL----------- 262
Query: 315 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL 374
K LVD H+ GLYVLLDVVHSHASKN LDGLN FDGT ACFFH G RG H L
Sbjct: 263 --------KELVDVAHQHGLYVLLDVVHSHASKNTLDGLNMFDGTDACFFHSGARGEHSL 314
Query: 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 434
WDSRLFNY+E EVLRFLLSNLRWY++EY FDGFRFDGVTSMLYH+ G G+GFSGHYDEY+
Sbjct: 315 WDSRLFNYAEYEVLRFLLSNLRWYIEEYGFDGFRFDGVTSMLYHSRGLGQGFSGHYDEYY 374
Query: 435 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PD 493
GLNVD + ++YLM+AN LH+ YPEI+TIAEDVSGMP CRPV EGG GFDYRL + PD
Sbjct: 375 GLNVDVEGIVYLMLANHMLHEIYPEIVTIAEDVSGMPGVCRPVAEGGVGFDYRLAMAIPD 434
Query: 494 --------MSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHE---GDKVIIF 535
+ D D + R W+ Y + + GDK I F
Sbjct: 435 KWIKLLKEVKDEDWKMSDICWTLSNRR--WMEKAVAYCESHDQALVGDKTIAF 485
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332023850|gb|EGI64074.1| 1,4-alpha-glucan-branching enzyme [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 225/475 (47%), Positives = 284/475 (59%), Gaps = 93/475 (19%)
Query: 77 VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 136
V G+FNNW + YKKL++GKWEL LPPN DGSC L H S++KL++++ + LL+RL
Sbjct: 88 VFLTGEFNNWQQTATPYKKLEYGKWELHLPPNADGSCPLKHNSEIKLIIKSHNNELLERL 147
Query: 137 SPWATYVTEPP--VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQK 194
SPWATYVT+ P G Y+QRIW+ P++ +K+ KPK+P++L+IYE H+GI TQE +
Sbjct: 148 SPWATYVTQKPDKSEGITYKQRIWH--PENTYKFKHPKPKRPESLRIYECHIGIGTQECR 205
Query: 195 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 254
+Y +F R VIPRIVKQG +N ++ + + Y
Sbjct: 206 VGTYLEFARDVIPRIVKQG------------------YNTIQVMAIMEHAYY-------- 239
Query: 255 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAG 314
A G + +F+ + ++G PE+L
Sbjct: 240 -----ASFGYQVTSFYAV---------------------SSRYGNPEEL----------- 262
Query: 315 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL 374
K LVD H+ GLYVLLDVVHSHASKN LDGLN FDGT ACFFH G RG H L
Sbjct: 263 --------KELVDVAHQHGLYVLLDVVHSHASKNTLDGLNMFDGTDACFFHSGSRGEHSL 314
Query: 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 434
WDSRLFNY+E EVLRFLLSNLRWY++EY FDGFRFDGVTSMLYH+ G G+GFSGHYDEY+
Sbjct: 315 WDSRLFNYAEYEVLRFLLSNLRWYIEEYGFDGFRFDGVTSMLYHSRGLGQGFSGHYDEYY 374
Query: 435 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PD 493
GLNVD + ++YLM+AN LH+ YPEI+TIAEDVSGMP CRPV EGG GFDYRL + PD
Sbjct: 375 GLNVDVEGIVYLMLANHMLHEIYPEIVTIAEDVSGMPGVCRPVAEGGMGFDYRLAMAIPD 434
Query: 494 M----------SDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHE---GDKVIIF 535
D VG ++ +W+ Y + + GDK I F
Sbjct: 435 KWIKLLKEVKDDDWKVGEICWTLSNR----RWMEKAVAYSESHDQALVGDKTIAF 485
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91076104|ref|XP_968648.1| PREDICTED: similar to GA17312-PA [Tribolium castaneum] gi|270014582|gb|EFA11030.1| hypothetical protein TcasGA2_TC004619 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 226/471 (47%), Positives = 280/471 (59%), Gaps = 90/471 (19%)
Query: 80 AGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 139
GDFN WNR+ YKKL+FGKWELV+PP PDGSC + HLS+VK+VV Q G DRLSP+
Sbjct: 91 TGDFNGWNRDSHRYKKLEFGKWELVIPPKPDGSCAIPHLSEVKVVVETQSGTKEDRLSPY 150
Query: 140 ATYVTEPPV-VGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASY 198
ATYV EPP G Y+Q+ WNP +K+++ S+P KP L+IYE HVGI T E K SY
Sbjct: 151 ATYVVEPPKDQGTIYKQKFWNPPNSEKYEFRHSRPAKPKGLRIYECHVGIATSELKVGSY 210
Query: 199 EDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHD 258
++F ++PRIVKQG I+L+ A E
Sbjct: 211 DNFTDNILPRIVKQGYNT----IQLM---------------------------AIMEHAY 239
Query: 259 QALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGT 318
A G + +F+ A ++GTPEQL
Sbjct: 240 YASFGYQVTSFYA---------------------ASSRYGTPEQL--------------- 263
Query: 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSR 378
K L+D H+ GL VLLD+VHSHASKNVLDGLN+FDGT +CFFH G RG H LWDSR
Sbjct: 264 ----KRLIDRAHELGLTVLLDLVHSHASKNVLDGLNQFDGTDSCFFHAGARGEHSLWDSR 319
Query: 379 LFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV 438
LFNY E EV+RFLLSN+RWY++EY+FDGFRFDGVTSMLYH+ G G+GFSG+Y+EYFGLNV
Sbjct: 320 LFNYQEFEVMRFLLSNIRWYMEEYKFDGFRFDGVTSMLYHSRGIGQGFSGNYEEYFGLNV 379
Query: 439 DTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PDM--- 494
DT+ L+YLM+AN H P+ ITIAEDVSGMP +CRP++EG GFDYRL + PD
Sbjct: 380 DTEGLVYLMLANHVAHHFNPDGITIAEDVSGMPGTCRPISEGCLGFDYRLAMAVPDKWIK 439
Query: 495 -------SDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHE---GDKVIIF 535
D VG ++T R +W+ Y + + GDK I F
Sbjct: 440 LLKHYSDDDWNVGNI---VHTLTNR-RWMEPSVAYAESHDQALVGDKTIAF 486
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195124622|ref|XP_002006790.1| GI21261 [Drosophila mojavensis] gi|193911858|gb|EDW10725.1| GI21261 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 226/473 (47%), Positives = 282/473 (59%), Gaps = 86/473 (18%)
Query: 77 VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 136
V GDFNNW+ E YKKL FGKWEL LP NPDGS + HLS++K+++RNQHG LLDRL
Sbjct: 82 VYLTGDFNNWHWESHPYKKLPFGKWELHLPANPDGSAPIKHLSEIKVIIRNQHGQLLDRL 141
Query: 137 SPWATYVTEPPVV---GHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQ 193
SPWA YV +PP G Y+Q +W P ++++ +++P KP +L+IYE HVGI +QE
Sbjct: 142 SPWAKYVVQPPKSANQGVNYKQYVWQPPEGERYQRQNARPPKPKSLRIYECHVGIASQEP 201
Query: 194 KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 253
+ SY++F ++PRI +QG N + + +A
Sbjct: 202 RVGSYDEFADRIVPRIKRQGY---------------------NCI----------QVMAI 230
Query: 254 AESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKA 313
E A G + +F+ A ++G PEQL
Sbjct: 231 MEHAYYASFGYQVTSFYA---------------------ASSRYGNPEQL---------- 259
Query: 314 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP 373
K ++D H GLYVLLDVVHSHASKNV DGLN+FDGT +CFFHDG RG H
Sbjct: 260 ---------KRMIDVAHAQGLYVLLDVVHSHASKNVQDGLNQFDGTNSCFFHDGARGEHA 310
Query: 374 LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 433
LWDSRLFNY+E EVLRFLLSNLRW+ DEY FDG+RFDGVTSMLYH+ G GEGFSG Y+EY
Sbjct: 311 LWDSRLFNYTEYEVLRFLLSNLRWWHDEYNFDGYRFDGVTSMLYHSRGIGEGFSGDYNEY 370
Query: 434 FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-P 492
FGLNVDTDAL YL +AN LH PE+ITIAEDVSGMP CRPV+EGG GFDYRL + P
Sbjct: 371 FGLNVDTDALNYLGLANYMLHKLDPEVITIAEDVSGMPTLCRPVSEGGIGFDYRLGMAIP 430
Query: 493 D-----MSDMTVGTFDAA--MNTTEERFKWLSADPGYVSTKHE---GDKVIIF 535
D + + T +D ++T R +W+ Y + + GDK I F
Sbjct: 431 DKWIELLKEQTDDQWDIGNIVHTLTNR-RWMENTVAYAESHDQALVGDKTIAF 482
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156548680|ref|XP_001602425.1| PREDICTED: 1,4-alpha-glucan-branching enzyme-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 225/473 (47%), Positives = 283/473 (59%), Gaps = 87/473 (18%)
Query: 77 VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 136
V GDFNNW+R + YKKL+FGKWEL LP N DGSC + HLS+VK+++R++ G L++RL
Sbjct: 88 VYLTGDFNNWDRTKHPYKKLEFGKWELQLPQNNDGSCPIKHLSEVKIIIRDKSGQLIERL 147
Query: 137 SPWATYVTEPPVV--GHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQK 194
SPWATYVT+ + G ++QRIW P PQ+ ++ KPKKP++L+IYESHVGI TQE +
Sbjct: 148 SPWATYVTQSKNLDEGTTFKQRIWYPGPQNVYQPKHPKPKKPESLRIYESHVGIATQEHR 207
Query: 195 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 254
+Y +F + VIPRI KQG +N ++ + + Y
Sbjct: 208 VGTYLEFAKNVIPRIKKQG------------------YNAIQLMAVMEHAYY-------- 241
Query: 255 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAG 314
A G + +F+ A +FGTP++L
Sbjct: 242 -----ASFGYQVTSFFA---------------------ASSRFGTPDEL----------- 264
Query: 315 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL 374
K L+D H+ GLYVLLD+VHSHASKN LDGLN FDGT ACFFH G RG HPL
Sbjct: 265 --------KELIDIAHQNGLYVLLDIVHSHASKNTLDGLNMFDGTDACFFHSGSRGQHPL 316
Query: 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 434
WDSRLFNY + EVLRFLLSNLRWY +EY FDG+RFDGVTSMLYH+ G G+GFSG YDEYF
Sbjct: 317 WDSRLFNYGDYEVLRFLLSNLRWYTEEYGFDGYRFDGVTSMLYHSRGLGQGFSGSYDEYF 376
Query: 435 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL------ 488
GLNVD + ++YLM+AN LH YPE+ITIAEDVSGMP CRPV+EGG GFD+RL
Sbjct: 377 GLNVDVEGIVYLMLANYLLHHYYPEVITIAEDVSGMPGICRPVSEGGIGFDFRLGMAIPD 436
Query: 489 ---EIRPDMSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHE---GDKVIIF 535
++ + D D T R W+ Y + + GDK I F
Sbjct: 437 KWIKLLKETPDENWNMGDIVWTLTNRR--WMEKTVAYAESHDQALVGDKTIAF 487
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198458865|ref|XP_001361183.2| GA17312 [Drosophila pseudoobscura pseudoobscura] gi|198136502|gb|EAL25760.2| GA17312 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 223/474 (47%), Positives = 275/474 (58%), Gaps = 88/474 (18%)
Query: 77 VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 136
V AGDFNNW+ E +KKL+FGKWEL LPPN DGS ++ HLS++K+++RN HLLDRL
Sbjct: 82 VYLAGDFNNWHWESHPFKKLEFGKWELHLPPNADGSPQIKHLSEIKIIIRNHSDHLLDRL 141
Query: 137 SPWATYVTEPPV---VGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQ 193
SPWA YV +PP G Y+Q +W P ++++ S+P +P +L+IYE HVGI +QE
Sbjct: 142 SPWAKYVVQPPKEANQGVNYKQYVWQPPESERYQRQHSRPARPKSLRIYECHVGIASQEP 201
Query: 194 KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 253
+ +Y++F ++PRI +QG N + + +A
Sbjct: 202 RVGTYDEFADRIVPRIKRQGY---------------------NCI----------QVMAI 230
Query: 254 AESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKA 313
E A G + +F+ A + G PEQL
Sbjct: 231 MEHAYYASFGYQVTSFYA---------------------ASSRCGNPEQL---------- 259
Query: 314 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP 373
K ++D H GLYVLLDVVHSHASKNV DGLN+FDGT +CFFHDG RG H
Sbjct: 260 ---------KRMIDVAHSHGLYVLLDVVHSHASKNVQDGLNQFDGTNSCFFHDGARGEHS 310
Query: 374 LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 433
LWDSRLFNY E EVLRFLLSNLRW+ DEY FDG+RFDGVTSMLYH+ G GEGFSG Y+EY
Sbjct: 311 LWDSRLFNYVEYEVLRFLLSNLRWWHDEYNFDGYRFDGVTSMLYHSRGIGEGFSGDYNEY 370
Query: 434 FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL----- 488
FGLNVDTDAL YL +AN LH PE+ITIAEDVSGMP CRPV+EGG GFDYRL
Sbjct: 371 FGLNVDTDALNYLGLANHMLHTLDPEVITIAEDVSGMPTLCRPVSEGGIGFDYRLGMAIP 430
Query: 489 ----EIRPDMSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHE---GDKVIIF 535
E+ + SD D T R W+ Y + + GDK I F
Sbjct: 431 DKWIELLKEQSDDQWSMGDVVHTLTNRR--WMENTVAYAESHDQALVGDKTIAF 482
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1351 | ||||||
| FB|FBgn0053138 | 685 | AGBE "1,4-Alpha-Glucan Branchi | 0.162 | 0.319 | 0.619 | 1.2e-124 | |
| UNIPROTKB|G4NAD9 | 691 | MGG_03186 "1,4-alpha-glucan-br | 0.132 | 0.259 | 0.694 | 9.1e-130 | |
| UNIPROTKB|F1PX32 | 699 | GBE1 "Uncharacterized protein" | 0.131 | 0.254 | 0.709 | 9.2e-129 | |
| UNIPROTKB|Q04446 | 702 | GBE1 "1,4-alpha-glucan-branchi | 0.131 | 0.253 | 0.703 | 5.8e-126 | |
| UNIPROTKB|E9PGM4 | 661 | GBE1 "1,4-alpha-glucan-branchi | 0.131 | 0.269 | 0.703 | 5.8e-126 | |
| MGI|MGI:1921435 | 702 | Gbe1 "glucan (1,4-alpha-), bra | 0.131 | 0.253 | 0.726 | 4.5e-125 | |
| ASPGD|ASPL0000046871 | 684 | AN2314 [Emericella nidulans (t | 0.132 | 0.261 | 0.666 | 1.6e-121 | |
| UNIPROTKB|F1MZP0 | 655 | GBE1 "Uncharacterized protein" | 0.131 | 0.271 | 0.709 | 2.5e-121 | |
| WB|WBGene00011409 | 681 | T04A8.7 [Caenorhabditis elegan | 0.131 | 0.261 | 0.675 | 1.2e-117 | |
| ZFIN|ZDB-GENE-110411-171 | 688 | si:ch211-213e17.1 "si:ch211-21 | 0.131 | 0.258 | 0.698 | 2.4e-118 |
| FB|FBgn0053138 AGBE "1,4-Alpha-Glucan Branching Enzyme" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 720 (258.5 bits), Expect = 1.2e-124, Sum P(4) = 1.2e-124
Identities = 143/231 (61%), Positives = 166/231 (71%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+G PEQLK ++D H GL+VLLDVVHSHASKNV DGLN+FDGT +CFFHDG RG H LW
Sbjct: 248 YGNPEQLKRMIDVAHSHGLFVLLDVVHSHASKNVQDGLNQFDGTNSCFFHDGARGEHSLW 307
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
DSRLFNY E EVLRFLLSNLRW+ DEY FDG+RFDGVTSMLYH+ G GEGFSG Y+EYFG
Sbjct: 308 DSRLFNYVEYEVLRFLLSNLRWWHDEYNFDGYRFDGVTSMLYHSRGIGEGFSGDYNEYFG 367
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PD- 493
LNVDTDAL YL +AN LH IITIAEDVSGMP CRPV+EGG GFDYRL + PD
Sbjct: 368 LNVDTDALNYLGLANHLLHTIDSRIITIAEDVSGMPTLCRPVSEGGIGFDYRLGMAIPDK 427
Query: 494 ----MSDMTVGTFDAA--MNTTEERFKWLSADPGYVSTKHE---GDKVIIF 535
+ + + +D ++T R +W+ Y + + GDK I F
Sbjct: 428 WIELLKEQSDDEWDMGNLVHTLTNR-RWMENTVAYAESHDQALVGDKTIAF 477
|
|
| UNIPROTKB|G4NAD9 MGG_03186 "1,4-alpha-glucan-branching enzyme" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 670 (240.9 bits), Expect = 9.1e-130, Sum P(5) = 9.1e-130
Identities = 125/180 (69%), Positives = 144/180 (80%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GTPE LK L+D H GL VLLDVVHSHASKNVLDG+NEFDGT +FH G +G H W
Sbjct: 256 YGTPEDLKELIDAAHGMGLTVLLDVVHSHASKNVLDGINEFDGTDHQYFHAGGKGRHDQW 315
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
DSRLFNY EVLRFLLSNLR+++DEYQFDGFRFDGVTSMLY +HG G GFSG Y EYFG
Sbjct: 316 DSRLFNYGHHEVLRFLLSNLRFWMDEYQFDGFRFDGVTSMLYLHHGMGTGFSGGYHEYFG 375
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PDM 494
+ D +AL+YLM+ANK LH+ YPE+I+IAEDVSGMP C P ++GG GFDYRL + PDM
Sbjct: 376 PDADEEALVYLMLANKMLHELYPEVISIAEDVSGMPTLCLPWSDGGVGFDYRLAMAIPDM 435
|
|
| UNIPROTKB|F1PX32 GBE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 9.2e-129, Sum P(4) = 9.2e-129
Identities = 127/179 (70%), Positives = 146/179 (81%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GTPE+LK L+D H G+ VLLDVVHSHASKN DGLN FDGT +C+FH GPRG H LW
Sbjct: 260 YGTPEELKELIDTAHSMGITVLLDVVHSHASKNSEDGLNMFDGTDSCYFHSGPRGNHDLW 319
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
DSRLF YS EVLRFLLSN+RW+L+EY FDGFRFDGVTSMLYH+HG GEGFSG Y EYFG
Sbjct: 320 DSRLFAYSSWEVLRFLLSNIRWWLEEYYFDGFRFDGVTSMLYHHHGMGEGFSGDYHEYFG 379
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PD 493
L VD DAL+YLM+AN +H YP+ IT+AEDVSGMPA C P+++GG GFDYRL + PD
Sbjct: 380 LQVDEDALVYLMLANHLVHTLYPDSITVAEDVSGMPALCSPISQGGVGFDYRLAMAIPD 438
|
|
| UNIPROTKB|Q04446 GBE1 "1,4-alpha-glucan-branching enzyme" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 697 (250.4 bits), Expect = 5.8e-126, Sum P(4) = 5.8e-126
Identities = 126/179 (70%), Positives = 146/179 (81%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GTPE+L+ LVD H G+ VLLDVVHSHASKN DGLN FDGT +C+FH GPRGTH LW
Sbjct: 263 YGTPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYFHSGPRGTHDLW 322
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
DSRLF YS E+LRFLLSN+RW+L+EY+FDGFRFDGVTSMLYH+HG G+GFSG Y EYFG
Sbjct: 323 DSRLFAYSSWEILRFLLSNIRWWLEEYRFDGFRFDGVTSMLYHHHGVGQGFSGDYSEYFG 382
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PD 493
L VD DAL YLM+AN +H P+ ITIAEDVSGMPA C P+++GG GFDYRL + PD
Sbjct: 383 LQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPALCSPISQGGGGFDYRLAMAIPD 441
|
|
| UNIPROTKB|E9PGM4 GBE1 "1,4-alpha-glucan-branching enzyme" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 697 (250.4 bits), Expect = 5.8e-126, Sum P(4) = 5.8e-126
Identities = 126/179 (70%), Positives = 146/179 (81%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GTPE+L+ LVD H G+ VLLDVVHSHASKN DGLN FDGT +C+FH GPRGTH LW
Sbjct: 222 YGTPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYFHSGPRGTHDLW 281
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
DSRLF YS E+LRFLLSN+RW+L+EY+FDGFRFDGVTSMLYH+HG G+GFSG Y EYFG
Sbjct: 282 DSRLFAYSSWEILRFLLSNIRWWLEEYRFDGFRFDGVTSMLYHHHGVGQGFSGDYSEYFG 341
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PD 493
L VD DAL YLM+AN +H P+ ITIAEDVSGMPA C P+++GG GFDYRL + PD
Sbjct: 342 LQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPALCSPISQGGGGFDYRLAMAIPD 400
|
|
| MGI|MGI:1921435 Gbe1 "glucan (1,4-alpha-), branching enzyme 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 4.5e-125, Sum P(4) = 4.5e-125
Identities = 130/179 (72%), Positives = 146/179 (81%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GTPE+LK LVD H G+ VLLDVVHSHASKN DGLN FDGT +C+FH GPRGTH LW
Sbjct: 263 YGTPEELKELVDTAHSMGIVVLLDVVHSHASKNSEDGLNMFDGTDSCYFHSGPRGTHDLW 322
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
DSRLF YS EVLRFLLSN+RW+L+EY FDGFRFDGVTSMLYH+HG G+GFSG Y+EYFG
Sbjct: 323 DSRLFIYSSWEVLRFLLSNIRWWLEEYCFDGFRFDGVTSMLYHHHGMGQGFSGDYNEYFG 382
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PD 493
L VD DALIYLM+AN H YP+ ITIAEDVSGMPA C P ++GG GFDYRL + PD
Sbjct: 383 LQVDEDALIYLMLANHLAHTLYPDSITIAEDVSGMPALCSPTSQGGGGFDYRLAMAIPD 441
|
|
| ASPGD|ASPL0000046871 AN2314 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 626 (225.4 bits), Expect = 1.6e-121, Sum P(5) = 1.6e-121
Identities = 120/180 (66%), Positives = 136/180 (75%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+G PE LK LVD H GL VLLDVVHSHASKNV DGLN FDG+ +FH G +G H LW
Sbjct: 246 YGKPEDLKELVDTAHSMGLVVLLDVVHSHASKNVDDGLNMFDGSDHLYFHSGSKGQHELW 305
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
DSRLFNY EVLRFLLSNLR++++EY FDGFRFDGVTSMLY +HG G GFSG Y EYFG
Sbjct: 306 DSRLFNYGNHEVLRFLLSNLRFWMEEYGFDGFRFDGVTSMLYTHHGIGTGFSGGYHEYFG 365
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PDM 494
VD D ++YL +AN+ LH YP+ IT+AEDVSGMPA C P GG GFDYRL + PDM
Sbjct: 366 PAVDDDGVMYLALANEMLHRLYPDCITVAEDVSGMPALCLPHGLGGVGFDYRLAMAIPDM 425
|
|
| UNIPROTKB|F1MZP0 GBE1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 693 (249.0 bits), Expect = 2.5e-121, Sum P(4) = 2.5e-121
Identities = 127/179 (70%), Positives = 146/179 (81%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GTPE+LK LVD H G+ VLLDVVHSHASKN DGLN FDGT++C+FH GPRGTH LW
Sbjct: 216 YGTPEELKELVDTAHSMGITVLLDVVHSHASKNSEDGLNMFDGTESCYFHYGPRGTHLLW 275
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
DSRLF Y+ EVLRFLLSN+RW+L+EY FDGFRFDGVTSMLYH+HG GE FSG Y EYFG
Sbjct: 276 DSRLFAYASWEVLRFLLSNIRWWLEEYGFDGFRFDGVTSMLYHHHGIGENFSGDYHEYFG 335
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PD 493
L VD DAL Y+M+AN +H YP+ ITIAEDVSGMPA C P+++GG GFDYRL + PD
Sbjct: 336 LQVDEDALTYIMLANHLVHTLYPDSITIAEDVSGMPALCSPISQGGGGFDYRLAMAIPD 394
|
|
| WB|WBGene00011409 T04A8.7 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 677 (243.4 bits), Expect = 1.2e-117, Sum P(4) = 1.2e-117
Identities = 121/179 (67%), Positives = 146/179 (81%)
Query: 317 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD 376
GTPE LKYLVD+ H G+++LLDVVHSHASKNV DGLN++DG+ +FHD RG H LWD
Sbjct: 245 GTPEDLKYLVDKAHSLGIFMLLDVVHSHASKNVEDGLNQWDGSNGGYFHDNARGYHNLWD 304
Query: 377 SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGL 436
SRLF+Y++ E LRFLLSN+RW+++EY FDGFRFDGV+SM+YH+HG + F G Y YFGL
Sbjct: 305 SRLFDYTQTETLRFLLSNVRWWVEEYGFDGFRFDGVSSMIYHSHGMNDDFCGGYPMYFGL 364
Query: 437 NVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PDM 494
N DTD+L+YLM+AN FLH KYP +ITIAE+VSGMP CRPV EGG GFDYRL + PDM
Sbjct: 365 NADTDSLVYLMLANDFLHKKYPFMITIAEEVSGMPGICRPVEEGGQGFDYRLAMALPDM 423
|
|
| ZFIN|ZDB-GENE-110411-171 si:ch211-213e17.1 "si:ch211-213e17.1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 685 (246.2 bits), Expect = 2.4e-118, Sum P(4) = 2.4e-118
Identities = 125/179 (69%), Positives = 142/179 (79%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
FGTP+ LK+LVD H G+ VLLDVVHSHAS N DGLN FDGT +CFFH G RG H LW
Sbjct: 247 FGTPDDLKHLVDTAHSMGIAVLLDVVHSHASSNTEDGLNYFDGTDSCFFHGGSRGKHSLW 306
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
DSRLFNYS EVLRFLLSNLRW+++EY+FDGFRFDGVTSMLYH+HG FSG+Y EYFG
Sbjct: 307 DSRLFNYSSWEVLRFLLSNLRWWMEEYRFDGFRFDGVTSMLYHHHGIDTSFSGNYSEYFG 366
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PD 493
+ VD +ALIYLM+AN LH YP+ IT+AEDVSGMP CR + EGG GFDYRL + PD
Sbjct: 367 MQVDENALIYLMLANHILHRLYPQCITVAEDVSGMPGLCRAIEEGGLGFDYRLTMAVPD 425
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.4.1.18 | 0.737 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1351 | |||
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 1e-115 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 1e-114 | |
| PLN02447 | 758 | PLN02447, PLN02447, 1,4-alpha-glucan-branching enz | 6e-98 | |
| PLN02447 | 758 | PLN02447, PLN02447, 1,4-alpha-glucan-branching enz | 2e-97 | |
| PLN02960 | 897 | PLN02960, PLN02960, alpha-amylase | 6e-58 | |
| PLN02960 | 897 | PLN02960, PLN02960, alpha-amylase | 6e-58 | |
| PLN03244 | 872 | PLN03244, PLN03244, alpha-amylase; Provisional | 1e-49 | |
| PLN03244 | 872 | PLN03244, PLN03244, alpha-amylase; Provisional | 3e-49 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 5e-48 | |
| PLN02447 | 758 | PLN02447, PLN02447, 1,4-alpha-glucan-branching enz | 5e-43 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 2e-41 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 3e-41 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 1e-40 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 2e-40 | |
| PRK12313 | 633 | PRK12313, PRK12313, glycogen branching enzyme; Pro | 2e-36 | |
| PRK12313 | 633 | PRK12313, PRK12313, glycogen branching enzyme; Pro | 4e-36 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 5e-32 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 6e-32 | |
| PLN02447 | 758 | PLN02447, PLN02447, 1,4-alpha-glucan-branching enz | 1e-30 | |
| TIGR01515 | 618 | TIGR01515, branching_enzym, alpha-1,4-glucan:alpha | 5e-30 | |
| TIGR01515 | 618 | TIGR01515, branching_enzym, alpha-1,4-glucan:alpha | 6e-30 | |
| PLN02447 | 758 | PLN02447, PLN02447, 1,4-alpha-glucan-branching enz | 3e-29 | |
| cd02854 | 95 | cd02854, E_set_GBE_euk_N, N-terminal Early set dom | 7e-29 | |
| PRK12568 | 730 | PRK12568, PRK12568, glycogen branching enzyme; Pro | 7e-25 | |
| PRK12568 | 730 | PRK12568, PRK12568, glycogen branching enzyme; Pro | 9e-25 | |
| PRK14705 | 1224 | PRK14705, PRK14705, glycogen branching enzyme; Pro | 1e-24 | |
| PRK14705 | 1224 | PRK14705, PRK14705, glycogen branching enzyme; Pro | 2e-24 | |
| cd11325 | 436 | cd11325, AmyAc_GTHase, Alpha amylase catalytic dom | 2e-22 | |
| cd11325 | 436 | cd11325, AmyAc_GTHase, Alpha amylase catalytic dom | 4e-22 | |
| cd02854 | 95 | cd02854, E_set_GBE_euk_N, N-terminal Early set dom | 3e-20 | |
| PRK14706 | 639 | PRK14706, PRK14706, glycogen branching enzyme; Pro | 8e-19 | |
| PRK14706 | 639 | PRK14706, PRK14706, glycogen branching enzyme; Pro | 1e-18 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 1e-17 | |
| PLN02960 | 897 | PLN02960, PLN02960, alpha-amylase | 6e-16 | |
| pfam02806 | 92 | pfam02806, Alpha-amylase_C, Alpha amylase, C-termi | 7e-16 | |
| PLN02960 | 897 | PLN02960, PLN02960, alpha-amylase | 9e-16 | |
| PLN02447 | 758 | PLN02447, PLN02447, 1,4-alpha-glucan-branching enz | 3e-15 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 1e-13 | |
| TIGR02402 | 544 | TIGR02402, trehalose_TreZ, malto-oligosyltrehalose | 2e-13 | |
| TIGR02402 | 544 | TIGR02402, trehalose_TreZ, malto-oligosyltrehalose | 6e-13 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 7e-13 | |
| PLN02447 | 758 | PLN02447, PLN02447, 1,4-alpha-glucan-branching enz | 1e-12 | |
| PLN03244 | 872 | PLN03244, PLN03244, alpha-amylase; Provisional | 1e-12 | |
| PLN02447 | 758 | PLN02447, PLN02447, 1,4-alpha-glucan-branching enz | 2e-12 | |
| PLN03244 | 872 | PLN03244, PLN03244, alpha-amylase; Provisional | 2e-12 | |
| cd11350 | 390 | cd11350, AmyAc_4, Alpha amylase catalytic domain f | 3e-12 | |
| cd11350 | 390 | cd11350, AmyAc_4, Alpha amylase catalytic domain f | 8e-12 | |
| cd11313 | 336 | cd11313, AmyAc_arch_bac_AmyA, Alpha amylase cataly | 7e-10 | |
| cd11313 | 336 | cd11313, AmyAc_arch_bac_AmyA, Alpha amylase cataly | 1e-09 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 4e-09 | |
| PLN02960 | 897 | PLN02960, PLN02960, alpha-amylase | 1e-08 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 2e-08 | |
| cd11322 | 402 | cd11322, AmyAc_Glg_BE, Alpha amylase catalytic dom | 9e-08 | |
| PLN02960 | 897 | PLN02960, PLN02960, alpha-amylase | 2e-07 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 3e-07 | |
| cd11338 | 389 | cd11338, AmyAc_CMD, Alpha amylase catalytic domain | 3e-07 | |
| COG1523 | 697 | COG1523, PulA, Type II secretory pathway, pullulan | 3e-07 | |
| cd11338 | 389 | cd11338, AmyAc_CMD, Alpha amylase catalytic domain | 4e-07 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 5e-07 | |
| cd11326 | 433 | cd11326, AmyAc_Glg_debranch, Alpha amylase catalyt | 7e-07 | |
| PLN03244 | 872 | PLN03244, PLN03244, alpha-amylase; Provisional | 8e-07 | |
| COG1523 | 697 | COG1523, PulA, Type II secretory pathway, pullulan | 8e-07 | |
| cd11326 | 433 | cd11326, AmyAc_Glg_debranch, Alpha amylase catalyt | 1e-06 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 2e-06 | |
| pfam02922 | 83 | pfam02922, CBM_48, Carbohydrate-binding module 48 | 2e-06 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 3e-06 | |
| cd11319 | 375 | cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic d | 4e-06 | |
| TIGR02102 | 1111 | TIGR02102, pullulan_Gpos, pullulanase, extracellul | 4e-06 | |
| PRK12313 | 633 | PRK12313, PRK12313, glycogen branching enzyme; Pro | 7e-06 | |
| TIGR02102 | 1111 | TIGR02102, pullulan_Gpos, pullulanase, extracellul | 7e-06 | |
| cd11319 | 375 | cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic d | 8e-06 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 2e-05 | |
| PLN02447 | 758 | PLN02447, PLN02447, 1,4-alpha-glucan-branching enz | 2e-05 | |
| PLN02960 | 897 | PLN02960, PLN02960, alpha-amylase | 2e-05 | |
| cd00551 | 260 | cd00551, AmyAc_family, Alpha amylase catalytic dom | 2e-05 | |
| cd00551 | 260 | cd00551, AmyAc_family, Alpha amylase catalytic dom | 2e-05 | |
| PLN03244 | 872 | PLN03244, PLN03244, alpha-amylase; Provisional | 3e-05 | |
| pfam02806 | 92 | pfam02806, Alpha-amylase_C, Alpha amylase, C-termi | 3e-05 | |
| TIGR02104 | 605 | TIGR02104, pulA_typeI, pullulanase, type I | 5e-05 | |
| PLN02447 | 758 | PLN02447, PLN02447, 1,4-alpha-glucan-branching enz | 6e-05 | |
| PRK14706 | 639 | PRK14706, PRK14706, glycogen branching enzyme; Pro | 9e-05 | |
| PRK12313 | 633 | PRK12313, PRK12313, glycogen branching enzyme; Pro | 1e-04 | |
| TIGR02104 | 605 | TIGR02104, pulA_typeI, pullulanase, type I | 1e-04 | |
| smart00642 | 166 | smart00642, Aamy, Alpha-amylase domain | 1e-04 | |
| smart00642 | 166 | smart00642, Aamy, Alpha-amylase domain | 1e-04 | |
| cd11352 | 443 | cd11352, AmyAc_5, Alpha amylase catalytic domain f | 1e-04 | |
| cd11352 | 443 | cd11352, AmyAc_5, Alpha amylase catalytic domain f | 1e-04 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 2e-04 | |
| TIGR02100 | 688 | TIGR02100, glgX_debranch, glycogen debranching enz | 3e-04 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 5e-04 | |
| PRK12313 | 633 | PRK12313, PRK12313, glycogen branching enzyme; Pro | 5e-04 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 6e-04 | |
| cd02855 | 105 | cd02855, E_set_GBE_prok_N, N-terminal Early set do | 6e-04 | |
| COG0366 | 505 | COG0366, AmyA, Glycosidases [Carbohydrate transpor | 7e-04 | |
| PRK12313 | 633 | PRK12313, PRK12313, glycogen branching enzyme; Pro | 0.001 | |
| PRK14706 | 639 | PRK14706, PRK14706, glycogen branching enzyme; Pro | 0.001 | |
| TIGR02100 | 688 | TIGR02100, glgX_debranch, glycogen debranching enz | 0.001 | |
| PRK09505 | 683 | PRK09505, malS, alpha-amylase; Reviewed | 0.001 | |
| PRK09505 | 683 | PRK09505, malS, alpha-amylase; Reviewed | 0.001 | |
| PRK14705 | 1224 | PRK14705, PRK14705, glycogen branching enzyme; Pro | 0.002 | |
| PRK14706 | 639 | PRK14706, PRK14706, glycogen branching enzyme; Pro | 0.002 | |
| COG0366 | 505 | COG0366, AmyA, Glycosidases [Carbohydrate transpor | 0.002 | |
| cd11315 | 352 | cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic | 0.002 | |
| cd11316 | 403 | cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic | 0.002 | |
| cd11316 | 403 | cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic | 0.002 | |
| cd11332 | 481 | cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalyti | 0.002 | |
| cd11341 | 406 | cd11341, AmyAc_Pullulanase_LD-like, Alpha amylase | 0.002 | |
| cd11314 | 302 | cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase | 0.002 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.003 | |
| cd11321 | 406 | cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic | 0.003 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.003 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.003 | |
| PRK05402 | 726 | PRK05402, PRK05402, glycogen branching enzyme; Pro | 0.003 | |
| PRK14705 | 1224 | PRK14705, PRK14705, glycogen branching enzyme; Pro | 0.003 | |
| pfam02922 | 83 | pfam02922, CBM_48, Carbohydrate-binding module 48 | 0.003 | |
| pfam02922 | 83 | pfam02922, CBM_48, Carbohydrate-binding module 48 | 0.003 | |
| cd11314 | 302 | cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase | 0.003 | |
| cd11348 | 429 | cd11348, AmyAc_2, Alpha amylase catalytic domain f | 0.003 | |
| cd11348 | 429 | cd11348, AmyAc_2, Alpha amylase catalytic domain f | 0.003 | |
| PRK03705 | 658 | PRK03705, PRK03705, glycogen debranching enzyme; P | 0.003 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 0.004 | |
| TIGR01515 | 618 | TIGR01515, branching_enzym, alpha-1,4-glucan:alpha | 0.004 | |
| cd11315 | 352 | cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic | 0.004 | |
| cd11341 | 406 | cd11341, AmyAc_Pullulanase_LD-like, Alpha amylase | 0.004 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 365 bits (940), Expect = e-115
Identities = 136/180 (75%), Positives = 150/180 (83%), Gaps = 1/180 (0%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
FGTPE LKYL+D H G+ VLLDVVHSHASKNVLDGLN FDGT C+FH+G RG HPLW
Sbjct: 84 FGTPEDLKYLIDTAHGMGIAVLLDVVHSHASKNVLDGLNMFDGTDGCYFHEGERGNHPLW 143
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
DSRLFNY + EVLRFLLSNLRW+L+EY+FDGFRFDGVTSMLYH+HG G GFSG Y EYFG
Sbjct: 144 DSRLFNYGKWEVLRFLLSNLRWWLEEYRFDGFRFDGVTSMLYHHHGLGTGFSGDYGEYFG 203
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PDM 494
LNVD DAL+YLM+AN LH+ YP ITIAEDVSGMP CRPV+EGG GFDYRL + PD
Sbjct: 204 LNVDEDALVYLMLANDLLHELYPNAITIAEDVSGMPGLCRPVSEGGIGFDYRLAMAIPDK 263
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 365 bits (939), Expect = e-114
Identities = 135/174 (77%), Positives = 147/174 (84%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
FGTPE LKYL+D H G+ VLLDVVHSHASKNVLDGLN FDGT C+FH+G RG HPLW
Sbjct: 84 FGTPEDLKYLIDTAHGMGIAVLLDVVHSHASKNVLDGLNMFDGTDGCYFHEGERGNHPLW 143
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1148
DSRLFNY + EVLRFLLSNLRW+LEEY+FDGFRFDGVTSMLYH+HG G GFSG Y EYFG
Sbjct: 144 DSRLFNYGKWEVLRFLLSNLRWWLEEYRFDGFRFDGVTSMLYHHHGLGTGFSGDYGEYFG 203
Query: 1149 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLG 1202
LNVD DAL+YLM+AN LH+ YP ITIAEDVSGMP CRPV+EGG GFDYRL
Sbjct: 204 LNVDEDALVYLMLANDLLHELYPNAITIAEDVSGMPGLCRPVSEGGIGFDYRLA 257
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Score = 331 bits (850), Expect = 6e-98
Identities = 126/189 (66%), Positives = 143/189 (75%), Gaps = 8/189 (4%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
GTPE LKYL+D+ H GL VL+DVVHSHASKN LDGLN FDGT +FH GPRG H LW
Sbjct: 296 SGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLW 355
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1148
DSRLFNY EVLRFLLSNLRW+LEEY+FDGFRFDGVTSMLYH+HG F+G+Y+EYFG
Sbjct: 356 DSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFG 415
Query: 1149 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLG------ 1202
+ D DA++YLM+AN LH YPE +TIAEDVSGMP CRPV EGG GFDYRL
Sbjct: 416 MATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPVQEGGVGFDYRLAMAIPDK 475
Query: 1203 --QYLHQHS 1209
+ L +
Sbjct: 476 WIELLKEKR 484
|
Length = 758 |
| >gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Score = 329 bits (846), Expect = 2e-97
Identities = 124/173 (71%), Positives = 140/173 (80%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
GTPE LKYL+D+ H GL VL+DVVHSHASKN LDGLN FDGT +FH GPRG H LW
Sbjct: 296 SGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLW 355
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
DSRLFNY EVLRFLLSNLRW+L+EY+FDGFRFDGVTSMLYH+HG F+G+Y+EYFG
Sbjct: 356 DSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFG 415
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 488
+ D DA++YLM+AN LH YPE +TIAEDVSGMP CRPV EGG GFDYRL
Sbjct: 416 MATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPVQEGGVGFDYRL 468
|
Length = 758 |
| >gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase | Back alignment and domain information |
|---|
Score = 217 bits (553), Expect = 6e-58
Identities = 93/182 (51%), Positives = 123/182 (67%), Gaps = 3/182 (1%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
FGTP+ K LVDE H GL V LD+VHS+A+ + + GL+ FDG+ C+FH G RG H W
Sbjct: 462 FGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRW 521
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
+R+F Y + EVL FLLSNL W++ EY+ DGF+F + SMLY ++G F+G DEY
Sbjct: 522 GTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFAS-FTGDLDEYCN 580
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIRPDMS 495
VD DALIYL++AN+ LH +P IITIAED + P C P ++GG GFDY + + P S
Sbjct: 581 QYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSP--S 638
Query: 496 DM 497
+M
Sbjct: 639 EM 640
|
Length = 897 |
| >gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase | Back alignment and domain information |
|---|
Score = 217 bits (553), Expect = 6e-58
Identities = 90/171 (52%), Positives = 117/171 (68%), Gaps = 1/171 (0%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
FGTP+ K LVDE H GL V LD+VHS+A+ + + GL+ FDG+ C+FH G RG H W
Sbjct: 462 FGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRW 521
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1148
+R+F Y + EVL FLLSNL W++ EY+ DGF+F + SMLY ++G F+G DEY
Sbjct: 522 GTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFAS-FTGDLDEYCN 580
Query: 1149 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1199
VD DALIYL++AN+ LH +P IITIAED + P C P ++GG GFDY
Sbjct: 581 QYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDY 631
|
Length = 897 |
| >gnl|CDD|178782 PLN03244, PLN03244, alpha-amylase; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 1e-49
Identities = 88/180 (48%), Positives = 124/180 (68%), Gaps = 2/180 (1%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GTP+ K LVDE H GL V LD+VHS+A+ + + GL+ FDG+ C+FH G RG H W
Sbjct: 437 YGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHW 496
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
+R+F Y +++VL FL+SNL W++ EYQ DGF+F + SM+Y ++G F+G D+Y
Sbjct: 497 GTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFAS-FNGDLDDYCN 555
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIR-PDM 494
VD DAL+YL++AN+ LH +P+IITIAED + P C P ++GG GFDY + + PDM
Sbjct: 556 QYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSAPDM 615
|
Length = 872 |
| >gnl|CDD|178782 PLN03244, PLN03244, alpha-amylase; Provisional | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 3e-49
Identities = 85/171 (49%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+GTP+ K LVDE H GL V LD+VHS+A+ + + GL+ FDG+ C+FH G RG H W
Sbjct: 437 YGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHW 496
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1148
+R+F Y +++VL FL+SNL W++ EYQ DGF+F + SM+Y ++G F+G D+Y
Sbjct: 497 GTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFAS-FNGDLDDYCN 555
Query: 1149 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1199
VD DAL+YL++AN+ LH +P+IITIAED + P C P ++GG GFDY
Sbjct: 556 QYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDY 606
|
Length = 872 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 5e-48
Identities = 66/81 (81%), Positives = 73/81 (90%)
Query: 213 GMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLM 272
MAIPDKWI+LLK+ KDEDWNMGNIVHTLTNRRY EKT+AYAESHDQALVGDKT+AFWLM
Sbjct: 257 AMAIPDKWIKLLKEKKDEDWNMGNIVHTLTNRRYGEKTIAYAESHDQALVGDKTLAFWLM 316
Query: 273 DKEMYTHMSTLSDPSLIIDRA 293
DKEMYT+MS LS + +IDR
Sbjct: 317 DKEMYTNMSVLSPLTPVIDRG 337
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 5e-43
Identities = 63/79 (79%), Positives = 71/79 (89%)
Query: 214 MAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMD 273
MAIPDKWIELLK+ +DEDW+MG+IVHTLTNRRY EK VAYAESHDQALVGDKTIAFWLMD
Sbjct: 470 MAIPDKWIELLKEKRDEDWSMGDIVHTLTNRRYTEKCVAYAESHDQALVGDKTIAFWLMD 529
Query: 274 KEMYTHMSTLSDPSLIIDR 292
KEMY MSTL+ + ++DR
Sbjct: 530 KEMYDGMSTLTPATPVVDR 548
|
Length = 758 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 2e-41
Identities = 73/172 (42%), Positives = 101/172 (58%), Gaps = 5/172 (2%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 1087
+GTP+ KY VD CH+AG+ V+LD V H K+ GL FDGT + + PR G HP
Sbjct: 104 YGTPDDFKYFVDACHQAGIGVILDWVPGHFPKD-DHGLARFDGT-PLYEYPDPRKGEHPD 161
Query: 1088 WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1147
W + F+Y EV FL+SN ++LEEY DG R D V+SMLY ++ G G +
Sbjct: 162 WGTLNFDYGRNEVRSFLISNALYWLEEYHIDGLRVDAVSSMLYLDYDRGPGEWIPNI--Y 219
Query: 1148 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1199
G N + +A+ +L N +H ++P ++TIAE+ + P PV EGG GFDY
Sbjct: 220 GGNENLEAIEFLKELNTVIHKRHPGVLTIAEESTAWPGVTAPVEEGGLGFDY 271
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 156 bits (398), Expect = 3e-41
Identities = 72/172 (41%), Positives = 101/172 (58%), Gaps = 5/172 (2%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 374
+GTP+ KY VD CH+AG+ V+LD V H K+ GL FDGT + + PR G HP
Sbjct: 104 YGTPDDFKYFVDACHQAGIGVILDWVPGHFPKD-DHGLARFDGT-PLYEYPDPRKGEHPD 161
Query: 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 434
W + F+Y EV FL+SN ++L+EY DG R D V+SMLY ++ G G +
Sbjct: 162 WGTLNFDYGRNEVRSFLISNALYWLEEYHIDGLRVDAVSSMLYLDYDRGPGEWIPNI--Y 219
Query: 435 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 486
G N + +A+ +L N +H ++P ++TIAE+ + P PV EGG GFDY
Sbjct: 220 GGNENLEAIEFLKELNTVIHKRHPGVLTIAEESTAWPGVTAPVEEGGLGFDY 271
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 1e-40
Identities = 68/172 (39%), Positives = 91/172 (52%), Gaps = 3/172 (1%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+GTPE K LVD H+AG+ V+LD V +H + + L FDGT D RG H W
Sbjct: 210 YGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDG-NYLARFDGTFLYEHEDPRRGEHTDW 268
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1148
+ +FNY EV FLL+N ++LEEY DG R D V SMLY +EY G
Sbjct: 269 GTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLY-LDYSRAEGEWVPNEY-G 326
Query: 1149 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1200
+ +A +L N +H++ P +TIAE+ + P PV GG GF Y+
Sbjct: 327 GRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYK 378
|
Length = 628 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 2e-40
Identities = 67/172 (38%), Positives = 91/172 (52%), Gaps = 3/172 (1%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GTPE K LVD H+AG+ V+LD V +H + + L FDGT D RG H W
Sbjct: 210 YGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDG-NYLARFDGTFLYEHEDPRRGEHTDW 268
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
+ +FNY EV FLL+N ++L+EY DG R D V SMLY +EY G
Sbjct: 269 GTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLY-LDYSRAEGEWVPNEY-G 326
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 487
+ +A +L N +H++ P +TIAE+ + P PV GG GF Y+
Sbjct: 327 GRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYK 378
|
Length = 628 |
| >gnl|CDD|237052 PRK12313, PRK12313, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 2e-36
Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 20/180 (11%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP-RGTHPL 374
+GTPE YLVD H+ G+ V+LD V H K+ DGL FDGT + + P R +P
Sbjct: 216 YGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDD-DGLAYFDGT-PLYEYQDPRRAENPD 273
Query: 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY- 433
W + F+ + EV FL+S+ ++LDEY DG R D V++MLY + YDE
Sbjct: 274 WGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLD----------YDEEG 323
Query: 434 ------FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 487
+G + +A+ +L N+ ++ ++P+++ IAE+ + P PV GG GFDY+
Sbjct: 324 EWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYK 383
|
Length = 633 |
| >gnl|CDD|237052 PRK12313, PRK12313, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 4e-36
Identities = 64/180 (35%), Positives = 99/180 (55%), Gaps = 20/180 (11%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP-RGTHPL 1087
+GTPE YLVD H+ G+ V+LD V H K+ DGL FDGT + + P R +P
Sbjct: 216 YGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDD-DGLAYFDGT-PLYEYQDPRRAENPD 273
Query: 1088 WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY- 1146
W + F+ + EV FL+S+ ++L+EY DG R D V++MLY + YDE
Sbjct: 274 WGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLD----------YDEEG 323
Query: 1147 ------FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1200
+G + +A+ +L N+ ++ ++P+++ IAE+ + P PV GG GFDY+
Sbjct: 324 EWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYK 383
|
Length = 633 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 5e-32
Identities = 74/178 (41%), Positives = 103/178 (57%), Gaps = 17/178 (9%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD--GLNEFDGTQACFFHDGPR-GTH 1085
FGTP+ +Y VD CH+AG+ V+LD V +H K D GL FDGT A + H PR G H
Sbjct: 311 FGTPDDFRYFVDACHQAGIGVILDWVPAHFPK---DAHGLARFDGT-ALYEHADPREGEH 366
Query: 1086 PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 1145
P W + +FNY EV FL++N ++LEE+ DG R D V SMLY ++ EG E
Sbjct: 367 PDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEG------E 420
Query: 1146 Y----FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1199
+ +G + +A+ +L N +H+++P +TIAE+ + P RP EGG GF Y
Sbjct: 421 WIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGVTRPTEEGGLGFGY 478
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 6e-32
Identities = 73/178 (41%), Positives = 103/178 (57%), Gaps = 17/178 (9%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD--GLNEFDGTQACFFHDGPR-GTH 372
FGTP+ +Y VD CH+AG+ V+LD V +H K D GL FDGT A + H PR G H
Sbjct: 311 FGTPDDFRYFVDACHQAGIGVILDWVPAHFPK---DAHGLARFDGT-ALYEHADPREGEH 366
Query: 373 PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 432
P W + +FNY EV FL++N ++L+E+ DG R D V SMLY ++ EG E
Sbjct: 367 PDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEG------E 420
Query: 433 Y----FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 486
+ +G + +A+ +L N +H+++P +TIAE+ + P RP EGG GF Y
Sbjct: 421 WIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGVTRPTEEGGLGFGY 478
|
Length = 726 |
| >gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 1e-30
Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 24/133 (18%)
Query: 502 FDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYRYCSTQ 561
FD AM +E++ +L+++ YVS K EGDKVI+FER L+F FNF+ T S++DY
Sbjct: 616 FDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERGDLVFVFNFHPTNSYSDY------ 669
Query: 562 SYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNN 621
RVG ++ GKYK+VLDSD FGGF R+D + T ++N
Sbjct: 670 ------------------RVGCDKPGKYKIVLDSDAWEFGGFGRVDHDADHFTPEGNFDN 711
Query: 622 RRNSIKLYLPTRT 634
R +S +Y P+RT
Sbjct: 712 RPHSFMVYAPSRT 724
|
Length = 758 |
| >gnl|CDD|188150 TIGR01515, branching_enzym, alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 5e-30
Identities = 66/172 (38%), Positives = 94/172 (54%), Gaps = 3/172 (1%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
FGTP+ Y VD CH+AG+ V+LD V H K+ GL EFDGT D G H W
Sbjct: 207 FGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDH-GLAEFDGTPLYEHKDPRDGEHWDW 265
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1148
+ +F+Y EV FL++N ++ E Y DG R D V SMLY ++ EG G
Sbjct: 266 GTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEG--EWSPNEDG 323
Query: 1149 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1200
+ +A+ +L N+ +++ +P ++TIAE+ + P RP EGG GF Y+
Sbjct: 324 GRENLEAVEFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYK 375
|
This model describes the glycogen branching enzymes which are responsible for the transfer of chains of approx. 7 alpha(1--4)-linked glucosyl residues to other similar chains (in new alpha(1--6) linkages) in the biosynthesis of glycogen. This enzyme is a member of the broader amylase family of starch hydrolases which fold as (beta/alpha)8 barrels, the so-called TIM-barrel structure. All of the sequences comprising the seed of this model have been experimentally characterized. (For instance,). This model encompasses both bacterial and eukaryotic species. No archaea have this enzyme, although Aquifex aolicus does. Two species, Bacillus thuringiensis and Clostridium perfringens have two sequences each which are annotated as amylases. These annotations are aparrently in error. GP|18143720 from C. perfringens, for instance, contains the note "674 aa, similar to gp:A14658_1 amylase (1,4-alpha-glucan branching enzyme (EC 2.4.1.18) ) from Bacillus thuringiensis (648 aa); 51.1% identity in 632 aa overlap." A branching enzyme from Porphyromonas gingivales, OMNI|PG1793, appears to be more closely related to the eukaryotic species (across a deep phylogenetic split) and may represent an instance of lateral transfer from this species' host. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 618 |
| >gnl|CDD|188150 TIGR01515, branching_enzym, alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 6e-30
Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 3/172 (1%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
FGTP+ Y VD CH+AG+ V+LD V H K+ GL EFDGT D G H W
Sbjct: 207 FGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDH-GLAEFDGTPLYEHKDPRDGEHWDW 265
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
+ +F+Y EV FL++N ++ + Y DG R D V SMLY ++ EG G
Sbjct: 266 GTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEG--EWSPNEDG 323
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 487
+ +A+ +L N+ +++ +P ++TIAE+ + P RP EGG GF Y+
Sbjct: 324 GRENLEAVEFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYK 375
|
This model describes the glycogen branching enzymes which are responsible for the transfer of chains of approx. 7 alpha(1--4)-linked glucosyl residues to other similar chains (in new alpha(1--6) linkages) in the biosynthesis of glycogen. This enzyme is a member of the broader amylase family of starch hydrolases which fold as (beta/alpha)8 barrels, the so-called TIM-barrel structure. All of the sequences comprising the seed of this model have been experimentally characterized. (For instance,). This model encompasses both bacterial and eukaryotic species. No archaea have this enzyme, although Aquifex aolicus does. Two species, Bacillus thuringiensis and Clostridium perfringens have two sequences each which are annotated as amylases. These annotations are aparrently in error. GP|18143720 from C. perfringens, for instance, contains the note "674 aa, similar to gp:A14658_1 amylase (1,4-alpha-glucan branching enzyme (EC 2.4.1.18) ) from Bacillus thuringiensis (648 aa); 51.1% identity in 632 aa overlap." A branching enzyme from Porphyromonas gingivales, OMNI|PG1793, appears to be more closely related to the eukaryotic species (across a deep phylogenetic split) and may represent an instance of lateral transfer from this species' host. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 618 |
| >gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 3e-29
Identities = 54/143 (37%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Query: 81 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140
GDFNNWN K +FG WE+ LP + DGS + H S+VK+ + G +DR+ W
Sbjct: 132 GDFNNWNPNAHWMTKNEFGVWEIFLP-DADGSPAIPHGSRVKIRMETPDGRWVDRIPAWI 190
Query: 141 TYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 199
Y P +G Y W+P ++K+ + +P +P L+IYE+HVG+ ++E K SY
Sbjct: 191 KYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRPPRPAALRIYEAHVGMSSEEPKVNSYR 250
Query: 200 DFVRVVIPRIVKQG------MAI 216
+F V+PRI G MAI
Sbjct: 251 EFADDVLPRIKALGYNAVQLMAI 273
|
Length = 758 |
| >gnl|CDD|199884 cd02854, E_set_GBE_euk_N, N-terminal Early set domain associated with the catalytic domain of eukaryotic glycogen branching enzyme (also called 1,4 alpha glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 7e-29
Identities = 36/78 (46%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 81 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140
GDFNNWNRE K+ +FGKWEL LPP +GS + H S+VKL V G LDR+ WA
Sbjct: 20 GDFNNWNRESHPLKRDEFGKWELFLPPK-EGSPAIPHGSKVKLHVETWDGGRLDRIPAWA 78
Query: 141 TYVTEPPVVGHAYEQRIW 158
V + P ++ W
Sbjct: 79 KRVVQDP-ETKIFDGVFW 95
|
This subfamily is composed of predominantly eukaryotic 1,4 alpha glucan branching enzymes, also called glycogen branching enzymes or starch binding enzymes in plants. E or "early" set domains are associated with the catalytic domain of the 1,4 alpha glucan branching enzymes at the N-terminal end. These enzymes catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage, yielding a non-reducing end oligosaccharide chain, as well as the subsequent attachment of short glucosyl chains to the alpha-1,6 position. Starch is composed of two types of glucan polymer: amylose and amylopectin. Amylose is mainly composed of linear chains of alpha-1,4 linked glucose residues and amylopectin consists of shorter alpha-1,4 linked chains connected by alpha-1,6 linkages. Amylopectin is synthesized from linear chains by starch branching enzyme. The N-terminal domains of the branching enzyme proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. Length = 95 |
| >gnl|CDD|139075 PRK12568, PRK12568, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 7e-25
Identities = 64/177 (36%), Positives = 99/177 (55%), Gaps = 15/177 (8%)
Query: 1030 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPLW 1088
G+P+ VD CH+AG+ V+LD V +H + GL +FDG A + H PR G H W
Sbjct: 316 GSPDGFAQFVDACHRAGIGVILDWVSAHFPDDA-HGLAQFDGA-ALYEHADPREGMHRDW 373
Query: 1089 DSRLFNYSEIEVLRFLL-SNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1147
++ ++NY EV +LL S L W +E Y DG R D V SMLY ++G EG E+
Sbjct: 374 NTLIYNYGRPEVTAYLLGSALEW-IEHYHLDGLRVDAVASMLYRDYGRAEG------EWV 426
Query: 1148 ----GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1200
G + +A+ +L N+ + ++P ++TIAE+ + P P+++GG GF ++
Sbjct: 427 PNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHK 483
|
Length = 730 |
| >gnl|CDD|139075 PRK12568, PRK12568, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 9e-25
Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 15/177 (8%)
Query: 317 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPLW 375
G+P+ VD CH+AG+ V+LD V +H + GL +FDG A + H PR G H W
Sbjct: 316 GSPDGFAQFVDACHRAGIGVILDWVSAHFPDDA-HGLAQFDGA-ALYEHADPREGMHRDW 373
Query: 376 DSRLFNYSEIEVLRFLL-SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 434
++ ++NY EV +LL S L W ++ Y DG R D V SMLY ++G EG E+
Sbjct: 374 NTLIYNYGRPEVTAYLLGSALEW-IEHYHLDGLRVDAVASMLYRDYGRAEG------EWV 426
Query: 435 ----GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 487
G + +A+ +L N+ + ++P ++TIAE+ + P P+++GG GF ++
Sbjct: 427 PNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHK 483
|
Length = 730 |
| >gnl|CDD|237794 PRK14705, PRK14705, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (280), Expect = 1e-24
Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 5/170 (2%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 374
FG P++ ++LVD H+AG+ VLLD V +H K+ L +FDG Q + H P G HP
Sbjct: 811 FGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSW-ALAQFDG-QPLYEHADPALGEHPD 868
Query: 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 434
W + +F++ EV FL++N ++LDE+ DG R D V SMLY ++ EG F
Sbjct: 869 WGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEG--QWRPNRF 926
Query: 435 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGF 484
G + +A+ +L N ++ +P + IAE+ + P P + GG GF
Sbjct: 927 GGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGF 976
|
Length = 1224 |
| >gnl|CDD|237794 PRK14705, PRK14705, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 2e-24
Identities = 61/170 (35%), Positives = 94/170 (55%), Gaps = 5/170 (2%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 1087
FG P++ ++LVD H+AG+ VLLD V +H K+ L +FDG Q + H P G HP
Sbjct: 811 FGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSW-ALAQFDG-QPLYEHADPALGEHPD 868
Query: 1088 WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1147
W + +F++ EV FL++N ++L+E+ DG R D V SMLY ++ EG F
Sbjct: 869 WGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEG--QWRPNRF 926
Query: 1148 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGF 1197
G + +A+ +L N ++ +P + IAE+ + P P + GG GF
Sbjct: 927 GGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGF 976
|
Length = 1224 |
| >gnl|CDD|200464 cd11325, AmyAc_GTHase, Alpha amylase catalytic domain found in Glycosyltrehalose trehalohydrolase (also called Maltooligosyl trehalose Trehalohydrolase) | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 2e-22
Identities = 55/175 (31%), Positives = 74/175 (42%), Gaps = 36/175 (20%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG--LNEFDGTQACFFHDGPRGTHP 1086
+G P+ LK LVD H+ GL V+LDVV++H DG L +F G +F D + P
Sbjct: 100 YGGPDDLKRLVDAAHRRGLAVILDVVYNHFGP---DGNYLWQFAGP---YFTD--DYSTP 151
Query: 1087 LW-DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHN--HGCGEGFSGHY 1143
W D+ F+ EV +F + N ++L EY DG R D V ++ + H E
Sbjct: 152 -WGDAINFDGPGDEVRQFFIDNALYWLREYHVDGLRLDAVHAIRDDSGWHFLQE------ 204
Query: 1144 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD 1198
L + A IAED P RP GG GFD
Sbjct: 205 -----LAREVRA-----------AAAGRPAHLIAEDDRNDPRLVRPPELGGAGFD 243
|
Glycosyltrehalose trehalohydrolase (GTHase) was discovered as part of a coupled system for the production of trehalose from soluble starch. In the first half of the reaction, glycosyltrehalose synthase (GTSase), an intramolecular glycosyl transferase, converts the glycosidic bond between the last two glucose residues of amylose from an alpha-1,4 bond to an alpha-1,1 bond, making a non-reducing glycosyl trehaloside. In the second half of the reaction, GTHase cleaves the alpha-1,4 glycosidic bond adjacent to the trehalose moiety to release trehalose and malto-oligosaccharide. Like isoamylase and other glycosidases that recognize branched oligosaccharides, GTHase contains an N-terminal extension and does not have the conserved calcium ion present in other alpha amylase family enzymes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Glycosyltrehalose Trehalohydrolase Maltooligosyltrehalose Trehalohydrolase. Length = 436 |
| >gnl|CDD|200464 cd11325, AmyAc_GTHase, Alpha amylase catalytic domain found in Glycosyltrehalose trehalohydrolase (also called Maltooligosyl trehalose Trehalohydrolase) | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 4e-22
Identities = 55/175 (31%), Positives = 74/175 (42%), Gaps = 36/175 (20%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG--LNEFDGTQACFFHDGPRGTHP 373
+G P+ LK LVD H+ GL V+LDVV++H DG L +F G +F D + P
Sbjct: 100 YGGPDDLKRLVDAAHRRGLAVILDVVYNHFGP---DGNYLWQFAGP---YFTD--DYSTP 151
Query: 374 LW-DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHN--HGCGEGFSGHY 430
W D+ F+ EV +F + N ++L EY DG R D V ++ + H E
Sbjct: 152 -WGDAINFDGPGDEVRQFFIDNALYWLREYHVDGLRLDAVHAIRDDSGWHFLQE------ 204
Query: 431 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD 485
L + A IAED P RP GG GFD
Sbjct: 205 -----LAREVRA-----------AAAGRPAHLIAEDDRNDPRLVRPPELGGAGFD 243
|
Glycosyltrehalose trehalohydrolase (GTHase) was discovered as part of a coupled system for the production of trehalose from soluble starch. In the first half of the reaction, glycosyltrehalose synthase (GTSase), an intramolecular glycosyl transferase, converts the glycosidic bond between the last two glucose residues of amylose from an alpha-1,4 bond to an alpha-1,1 bond, making a non-reducing glycosyl trehaloside. In the second half of the reaction, GTHase cleaves the alpha-1,4 glycosidic bond adjacent to the trehalose moiety to release trehalose and malto-oligosaccharide. Like isoamylase and other glycosidases that recognize branched oligosaccharides, GTHase contains an N-terminal extension and does not have the conserved calcium ion present in other alpha amylase family enzymes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Glycosyltrehalose Trehalohydrolase Maltooligosyltrehalose Trehalohydrolase. Length = 436 |
| >gnl|CDD|199884 cd02854, E_set_GBE_euk_N, N-terminal Early set domain associated with the catalytic domain of eukaryotic glycogen branching enzyme (also called 1,4 alpha glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 3e-20
Identities = 31/55 (56%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 955 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 1009
GDFNNWNRE K+ +FGKWEL LPP +GS + H S+VKL V G LDR
Sbjct: 20 GDFNNWNRESHPLKRDEFGKWELFLPPK-EGSPAIPHGSKVKLHVETWDGGRLDR 73
|
This subfamily is composed of predominantly eukaryotic 1,4 alpha glucan branching enzymes, also called glycogen branching enzymes or starch binding enzymes in plants. E or "early" set domains are associated with the catalytic domain of the 1,4 alpha glucan branching enzymes at the N-terminal end. These enzymes catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage, yielding a non-reducing end oligosaccharide chain, as well as the subsequent attachment of short glucosyl chains to the alpha-1,6 position. Starch is composed of two types of glucan polymer: amylose and amylopectin. Amylose is mainly composed of linear chains of alpha-1,4 linked glucose residues and amylopectin consists of shorter alpha-1,4 linked chains connected by alpha-1,6 linkages. Amylopectin is synthesized from linear chains by starch branching enzyme. The N-terminal domains of the branching enzyme proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. Length = 95 |
| >gnl|CDD|237795 PRK14706, PRK14706, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 8e-19
Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 8/173 (4%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
GTPE KYLV+ H G+ V+LD V H + GL FDG + D +G H W
Sbjct: 213 LGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDES-GLAHFDGGPLYEYADPRKGYHYDW 271
Query: 1089 DSRLFNYSEIEVLRFLL-SNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1147
++ +F+Y EV+ FL+ S L+W L+++ DG R D V SMLY + E +
Sbjct: 272 NTYIFDYGRNEVVMFLIGSALKW-LQDFHVDGLRVDAVASMLYLDFSRTEWVPNIH---- 326
Query: 1148 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1200
G + +A+ +L N+ H P + IAE+ + P P G GFDY+
Sbjct: 327 GGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYK 378
|
Length = 639 |
| >gnl|CDD|237795 PRK14706, PRK14706, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (226), Expect = 1e-18
Identities = 60/173 (34%), Positives = 86/173 (49%), Gaps = 8/173 (4%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
GTPE KYLV+ H G+ V+LD V H + GL FDG + D +G H W
Sbjct: 213 LGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDES-GLAHFDGGPLYEYADPRKGYHYDW 271
Query: 376 DSRLFNYSEIEVLRFLL-SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 434
++ +F+Y EV+ FL+ S L+W L ++ DG R D V SMLY + E +
Sbjct: 272 NTYIFDYGRNEVVMFLIGSALKW-LQDFHVDGLRVDAVASMLYLDFSRTEWVPNIH---- 326
Query: 435 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 487
G + +A+ +L N+ H P + IAE+ + P P G GFDY+
Sbjct: 327 GGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYK 378
|
Length = 639 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-17
Identities = 30/32 (93%), Positives = 32/32 (100%)
Query: 723 GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
GYNA+QLMAIMEHAYYASFGYQVT+FFAASSR
Sbjct: 52 GYNAIQLMAIMEHAYYASFGYQVTNFFAASSR 83
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 6e-16
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 845 LEQLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQE 904
LE++ WATYV P G + W P P++ +KW +PK P++L+IYE HVGI E
Sbjct: 351 LERVPAWATYV-LPDPDGKQWYAIHWEPPPEEAYKWKFERPKVPKSLRIYECHVGISGSE 409
Query: 905 QKCASYEDFVRVVIPRIVKQG 925
K +S+++F + V+P + K G
Sbjct: 410 PKISSFKEFTQKVLPHVKKAG 430
|
Length = 897 |
| >gnl|CDD|217237 pfam02806, Alpha-amylase_C, Alpha amylase, C-terminal all-beta domain | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 7e-16
Identities = 37/122 (30%), Positives = 48/122 (39%), Gaps = 40/122 (32%)
Query: 522 YVSTKHEGDKVIIFERAG-----LLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSIS 576
++S G+ VI FER G LL FNF +QS DYR
Sbjct: 1 WISFDDNGNNVIAFERGGDKGGGLLVVFNFTPSQSRQDYR-------------------- 40
Query: 577 KLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGL 636
G+ AG YK VL+SD +GG PW+ R + L LP + L
Sbjct: 41 ----TGLPVAGTYKDVLNSDAELYGGSGG--------CVTVPWDGR---LTLTLPPLSAL 85
Query: 637 IL 638
+L
Sbjct: 86 VL 87
|
Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain. Length = 92 |
| >gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 9e-16
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 133 LDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQE 192
L+R+ WATYV P G + W P P++ +KW +PK P +L+IYE HVGI E
Sbjct: 351 LERVPAWATYV-LPDPDGKQWYAIHWEPPPEEAYKWKFERPKVPKSLRIYECHVGISGSE 409
Query: 193 QKCASYEDFVRVVIPRIVKQG 213
K +S+++F + V+P + K G
Sbjct: 410 PKISSFKEFTQKVLPHVKKAG 430
|
Length = 897 |
| >gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 3e-15
Identities = 27/32 (84%), Positives = 28/32 (87%)
Query: 723 GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
GYNAVQLMAI EHAYY SFGY VT+FFA SSR
Sbjct: 264 GYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSR 295
|
Length = 758 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-13
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 162 PQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQG------MA 215
P++ +++ +P KP L+IYE+HVG+ ++E K ASY +F V+PRI K G MA
Sbjct: 1 PEEPYQFKHPRPPKPRALRIYEAHVGMSSEEPKVASYREFTDNVLPRIKKLGYNAIQLMA 60
Query: 216 I 216
I
Sbjct: 61 I 61
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|233850 TIGR02402, trehalose_TreZ, malto-oligosyltrehalose trehalohydrolase | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-13
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 16/105 (15%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 1086
+G P+ LK LVD H GL VLLDVV++H N L A +F D R + P
Sbjct: 156 YGGPDDLKALVDAAHGLGLGVLLDVVYNHFGPEGNYLPRF-------APYFTD--RYSTP 206
Query: 1087 LWDSRLFNYSE---IEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 1128
+ N+ EV R+++ N ++L EY FDG R D V ++
Sbjct: 207 WGAA--INFDGPGSDEVRRYIIDNALYWLREYHFDGLRLDAVHAI 249
|
Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 544 |
| >gnl|CDD|233850 TIGR02402, trehalose_TreZ, malto-oligosyltrehalose trehalohydrolase | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 6e-13
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 16/105 (15%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 373
+G P+ LK LVD H GL VLLDVV++H N L A +F D R + P
Sbjct: 156 YGGPDDLKALVDAAHGLGLGVLLDVVYNHFGPEGNYLPRF-------APYFTD--RYSTP 206
Query: 374 LWDSRLFNYSE---IEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415
+ N+ EV R+++ N ++L EY FDG R D V ++
Sbjct: 207 WGAA--INFDGPGSDEVRRYIIDNALYWLREYHFDGLRLDAVHAI 249
|
Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 544 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 7e-13
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 874 PQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQG 925
P++ +++ +P KP L+IYE+HVG+ ++E K ASY +F V+PRI K G
Sbjct: 1 PEEPYQFKHPRPPKPRALRIYEAHVGMSSEEPKVASYREFTDNVLPRIKKLG 52
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-12
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 851 WATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCAS 909
W Y P +G Y W+P ++K+ + +P +P L+IYE+HVG+ ++E K S
Sbjct: 189 WIKYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRPPRPAALRIYEAHVGMSSEEPKVNS 248
Query: 910 YEDFVRVVIPRIVKQG 925
Y +F V+PRI G
Sbjct: 249 YREFADDVLPRIKALG 264
|
Length = 758 |
| >gnl|CDD|178782 PLN03244, PLN03244, alpha-amylase; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 1e-12
Identities = 34/73 (46%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 845 LEQLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQE 904
LE++ WATYV P G W P P+ HKW + KPK PE+L+IYE HVGI E
Sbjct: 356 LERIPAWATYV-LPDDDGKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIYECHVGISGSE 414
Query: 905 QKCASYEDFVRVV 917
K +S+E+F V
Sbjct: 415 PKISSFEEFTEKV 427
|
Length = 872 |
| >gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-12
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 1214 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRT 1268
RVG ++ GKYK+VLDSD FGGF R+D + T ++NR +S +Y P+RT
Sbjct: 670 RVGCDKPGKYKIVLDSDAWEFGGFGRVDHDADHFTPEGNFDNRPHSFMVYAPSRT 724
|
Length = 758 |
| >gnl|CDD|178782 PLN03244, PLN03244, alpha-amylase; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 2e-12
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 133 LDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQE 192
L+R+ WATYV P G W P P+ HKW + KPK P++L+IYE HVGI E
Sbjct: 356 LERIPAWATYV-LPDDDGKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIYECHVGISGSE 414
Query: 193 QKCASYEDFVRVV 205
K +S+E+F V
Sbjct: 415 PKISSFEEFTEKV 427
|
Length = 872 |
| >gnl|CDD|200488 cd11350, AmyAc_4, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 3e-12
Identities = 40/104 (38%), Positives = 53/104 (50%), Gaps = 14/104 (13%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-----DGTQACFFHDGPR- 1082
+GTPE LK LVDECH+ G+ V+LDVV++HA +G + D D P
Sbjct: 78 YGTPEDLKRLVDECHQRGIAVILDVVYNHA-----EGQSPLARLYWDYWYNPPPADPPWF 132
Query: 1083 ---GTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
G H + FN+ F+ R++LEEY DGFRFD
Sbjct: 133 NVWGPHFYYVGYDFNHESPPTRDFVDDVNRYWLEEYHIDGFRFD 176
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 390 |
| >gnl|CDD|200488 cd11350, AmyAc_4, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 8e-12
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 14/104 (13%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-----DGTQACFFHDGPR- 369
+GTPE LK LVDECH+ G+ V+LDVV++HA +G + D D P
Sbjct: 78 YGTPEDLKRLVDECHQRGIAVILDVVYNHA-----EGQSPLARLYWDYWYNPPPADPPWF 132
Query: 370 ---GTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
G H + FN+ F+ R++L+EY DGFRFD
Sbjct: 133 NVWGPHFYYVGYDFNHESPPTRDFVDDVNRYWLEEYHIDGFRFD 176
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 390 |
| >gnl|CDD|200452 cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 7e-10
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRG--THP 1086
+GT E K LVDE H G+ V+LD V +H + + + ++ G T+
Sbjct: 72 YGTLEDFKALVDEAHDRGMKVILDWVANHTAWD-----HPLVEEHPEWYLRDSDGNITNK 126
Query: 1087 LWDSRL---FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
++D +YS E+ +++ +++++ E+ DGFR D
Sbjct: 127 VFDWTDVADLDYSNPELRDYMIDAMKYWVREFDVDGFRCD 166
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes firmicutes, bacteroidetes, and proteobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 336 |
| >gnl|CDD|200452 cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 1e-09
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRG--THP 373
+GT E K LVDE H G+ V+LD V +H + + + ++ G T+
Sbjct: 72 YGTLEDFKALVDEAHDRGMKVILDWVANHTAWD-----HPLVEEHPEWYLRDSDGNITNK 126
Query: 374 LWDSRL---FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
++D +YS E+ +++ +++++ E+ DGFR D
Sbjct: 127 VFDWTDVADLDYSNPELRDYMIDAMKYWVREFDVDGFRCD 166
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes firmicutes, bacteroidetes, and proteobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 336 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 4e-09
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 16/137 (11%)
Query: 81 GDFNNWN-REEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 139
GDFN+W+ R + + G WEL +P P G+ K + + G L + P+
Sbjct: 54 GDFNDWDGRRMPMRDRKESGIWELFVPGAPPGTR-------YKYELIDPSGQLRLKADPY 106
Query: 140 ATYVTEPPVVGHAYEQRIWNPKPQ--DKHKWTSSKPKKPDN-LKIYESHVGICTQEQKCA 196
A E + + + +W + + + IYE HVG T + +
Sbjct: 107 ARR-QEVGPHTASQ---VVDLPDYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD-RFL 161
Query: 197 SYEDFVRVVIPRIVKQG 213
Y + ++P + + G
Sbjct: 162 GYFELAIELLPYLKELG 178
|
Length = 628 |
| >gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-08
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 29/136 (21%)
Query: 502 FDAAMNTTEERFKWLSADPGYVSTKHEGD--KVIIFERAGLLFAFNFNGTQSFTDYRYCS 559
FD A+ +E++ LS G + H D VI F R LLFAFNF+ T S+ +Y
Sbjct: 776 FDKALMALDEKYLILSR--GLPNIHHVNDTSMVISFTRGPLLFAFNFHPTNSYEEYE--- 830
Query: 560 TQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGT-VYETYPEP 618
VGVE+AG+Y+++L++D +GG RL + T +
Sbjct: 831 ---------------------VGVEEAGEYELILNTDEVKYGGQGRLTEDQYLQRTKSKR 869
Query: 619 WNNRRNSIKLYLPTRT 634
+ RN ++L LP+R+
Sbjct: 870 IDGLRNCLELTLPSRS 885
|
Length = 897 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-08
Identities = 31/138 (22%), Positives = 48/138 (34%), Gaps = 25/138 (18%)
Query: 502 FDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYRYCSTQ 561
+ E F+W+ AD S + ++ R L N DYR
Sbjct: 515 PLHEQDFQPEGFEWIDADDAENS-VLAFYRRLLALRHEHLVVVNNFTPVPRVDYR----- 568
Query: 562 SYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNN 621
VGV AG+++ VL++D + +GG + G W+
Sbjct: 569 -------------------VGVPVAGRWREVLNTDLAEYGGSGAGNLGLPVSGEDILWHG 609
Query: 622 RRNSIKLYLPTRTGLILT 639
R S+ L LP L+L
Sbjct: 610 REWSLSLTLPPLAALVLK 627
|
Length = 628 |
| >gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme) | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 9e-08
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 723 GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
GY V+LM +MEH + S+GYQVT +FA +SR
Sbjct: 72 GYTHVELMPVMEHPFDGSWGYQVTGYFAPTSR 103
|
The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 402 |
| >gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-07
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 723 GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
GYNA+QL+ + EH Y+S GY+VT+FFA SSR
Sbjct: 430 GYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSR 461
|
Length = 897 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-07
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 723 GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
G ++LM + EH S+GYQ T ++A +SR
Sbjct: 178 GITHIELMPVAEHPGDRSWGYQGTGYYAPTSR 209
|
Length = 628 |
| >gnl|CDD|200477 cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 3e-07
Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 17/120 (14%)
Query: 1028 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS-------KNVLDG-----LNEFDGTQAC 1075
GT E K LV+E HK G+ V+LD V +H + G + F
Sbjct: 98 HLGTEEDFKELVEEAHKRGIRVILDGVFNHTGDDSPYFQDVLKYGESSAYQDWFSIYYFW 157
Query: 1076 FFHDGPRGTHPLW--DSRL--FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYH 1131
+ + W L N EV +L S R++L+E DG+R D V + H
Sbjct: 158 PYFTDEPPNYESWWGVPSLPKLNTENPEVREYLDSVARYWLKEGDIDGWRLD-VADEVPH 216
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 389 |
| >gnl|CDD|224440 COG1523, PulA, Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 3e-07
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 1035 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGT--QACFFHDGPRGTHPLWDSR 1091
K +V HKAG+ V+LDVV +H A N L F G + D D
Sbjct: 267 FKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDP--------DGY 318
Query: 1092 LFNYS----EIE-----VLRFLLSNLRWYLEEYQFDGFRFD 1123
N + + V + ++ +LR+++EEY DGFRFD
Sbjct: 319 YSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFD 359
|
Length = 697 |
| >gnl|CDD|200477 cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 4e-07
Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 17/120 (14%)
Query: 315 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS-------KNVLDG-----LNEFDGTQAC 362
GT E K LV+E HK G+ V+LD V +H + G + F
Sbjct: 98 HLGTEEDFKELVEEAHKRGIRVILDGVFNHTGDDSPYFQDVLKYGESSAYQDWFSIYYFW 157
Query: 363 FFHDGPRGTHPLW--DSRL--FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYH 418
+ + W L N EV +L S R++L E DG+R D V + H
Sbjct: 158 PYFTDEPPNYESWWGVPSLPKLNTENPEVREYLDSVARYWLKEGDIDGWRLD-VADEVPH 216
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 389 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 5e-07
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 579 HRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLIL 638
+R+GV QAG+++ VL++D H+GG N + G V PW+ R +S+ L LP LIL
Sbjct: 663 YRLGVPQAGRWREVLNTDAEHYGGSNVGNGGGV-HAEEVPWHGRPHSLSLTLPPLATLIL 721
|
Length = 726 |
| >gnl|CDD|200465 cd11326, AmyAc_Glg_debranch, Alpha amylase catalytic domain found in glycogen debranching enzymes | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 7e-07
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 35/111 (31%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP----RG----- 1083
++ K +V HKAG+ V+LDVV++H + E GP RG
Sbjct: 109 DEFKAMVKALHKAGIEVILDVVYNHTA--------EGG-------ELGPTLSFRGLDNAS 153
Query: 1084 --THPLWDSRLFNYS---------EIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
NY+ VLR +L +LR+++ E DGFRFD
Sbjct: 154 YYRLDPDGPYYLNYTGCGNTLNTNHPVVLRLILDSLRYWVTEMHVDGFRFD 204
|
Debranching enzymes facilitate the breakdown of glycogen through glucosyltransferase and glucosidase activity. These activities are performed by a single enzyme in mammals, yeast, and some bacteria, but by two distinct enzymes in Escherichia coli and other bacteria. Debranching enzymes perform two activities: 4-alpha-D-glucanotransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). 4-alpha-D-glucanotransferase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. Amylo-alpha-1,6-glucosidase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. In Escherichia coli, GlgX is the debranching enzyme and malQ is the 4-alpha-glucanotransferase. TreX, an archaeal glycogen-debranching enzyme has dual activities like mammals and yeast, but is structurally similar to GlgX. TreX exists in two oligomeric states, a dimer and tetramer. Isoamylase (EC 3.2.1.68) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen and their beta-limit dextrins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 433 |
| >gnl|CDD|178782 PLN03244, PLN03244, alpha-amylase; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 8e-07
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 214 MAIPDKWIELLKKFKDEDWNMGNIVHTLT-NRRYMEKTVAYAESHDQALVGDKTIA 268
++ PD W++ L D +W+M IV TL N+ Y +K ++YAE+H+Q++ G ++ A
Sbjct: 610 LSAPDMWLDFLDNIPDHEWSMSKIVSTLIANKEYADKMLSYAENHNQSISGGRSFA 665
|
Length = 872 |
| >gnl|CDD|224440 COG1523, PulA, Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 8e-07
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 322 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGT--QACFFHDGPRGTHPLWDSR 378
K +V HKAG+ V+LDVV +H A N L F G + D D
Sbjct: 267 FKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDP--------DGY 318
Query: 379 LFNYS----EIE-----VLRFLLSNLRWYLDEYQFDGFRFD 410
N + + V + ++ +LR++++EY DGFRFD
Sbjct: 319 YSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFD 359
|
Length = 697 |
| >gnl|CDD|200465 cd11326, AmyAc_Glg_debranch, Alpha amylase catalytic domain found in glycogen debranching enzymes | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 1e-06
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 35/111 (31%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP----RG----- 370
++ K +V HKAG+ V+LDVV++H + E GP RG
Sbjct: 109 DEFKAMVKALHKAGIEVILDVVYNHTA--------EGG-------ELGPTLSFRGLDNAS 153
Query: 371 --THPLWDSRLFNYS---------EIEVLRFLLSNLRWYLDEYQFDGFRFD 410
NY+ VLR +L +LR+++ E DGFRFD
Sbjct: 154 YYRLDPDGPYYLNYTGCGNTLNTNHPVVLRLILDSLRYWVTEMHVDGFRFD 204
|
Debranching enzymes facilitate the breakdown of glycogen through glucosyltransferase and glucosidase activity. These activities are performed by a single enzyme in mammals, yeast, and some bacteria, but by two distinct enzymes in Escherichia coli and other bacteria. Debranching enzymes perform two activities: 4-alpha-D-glucanotransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). 4-alpha-D-glucanotransferase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. Amylo-alpha-1,6-glucosidase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. In Escherichia coli, GlgX is the debranching enzyme and malQ is the 4-alpha-glucanotransferase. TreX, an archaeal glycogen-debranching enzyme has dual activities like mammals and yeast, but is structurally similar to GlgX. TreX exists in two oligomeric states, a dimer and tetramer. Isoamylase (EC 3.2.1.68) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen and their beta-limit dextrins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 433 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 2e-06
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 1214 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 1265
R+GV QAG+++ VL++D H+GG N + G V PW+ R +S+ L LP
Sbjct: 664 RLGVPQAGRWREVLNTDAEHYGGSNVGNGGGV-HAEEVPWHGRPHSLSLTLP 714
|
Length = 726 |
| >gnl|CDD|217288 pfam02922, CBM_48, Carbohydrate-binding module 48 (Isoamylase N-terminal domain) | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 80 AGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSP 138
DFNNW+ EE ++ + G WE+ LP + L H + K V G + +L P
Sbjct: 28 VLDFNNWDGEEHPMERKREGGVWEVFLPGD------LPHGGRYKYRVDGPDGPIKLKLDP 81
Query: 139 WA 140
+A
Sbjct: 82 YA 83
|
This domain is found in a range of enzymes that act on branched substrates - isoamylase, pullulanase and branching enzyme. This family also contains the beta subunit of 5' AMP activated kinase. Length = 83 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 3e-06
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 716 AQQL--YL--TGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
A QL Y+ G+ V+L+ I EH + S+GYQ T ++A +SR
Sbjct: 268 ADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSR 310
|
Length = 726 |
| >gnl|CDD|200458 cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic domain found in eukaryotic Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 4e-06
Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 42/127 (33%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGT---------QACFFH 1078
FGT + LK L HK G+Y+++DVV +H AS ++ C+
Sbjct: 94 FGTADDLKALSKALHKRGMYLMVDVVVNHMASAGPGSDVDYSSFVPFNDSSYYHPYCWIT 153
Query: 1079 DGPRGTHPLWDSRLFNYSEIE--------------------VLRFLLSNLRWYLEEYQFD 1118
D ++ N + +E V+ L ++ + Y D
Sbjct: 154 D--------YN----NQTSVEDCWLGDDVVALPDLNTENPFVVSTLNDWIKNLVSNYSID 201
Query: 1119 GFRFDGV 1125
G R D
Sbjct: 202 GLRIDTA 208
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes eukaryotic alpha-amylases including proteins from fungi, sponges, and protozoans. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 375 |
| >gnl|CDD|233728 TIGR02102, pullulan_Gpos, pullulanase, extracellular, Gram-positive | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 4e-06
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 23/100 (23%)
Query: 321 QLKYLVDECHKAGLYVLLDVVHSHASK---------NVLDGLNEFDGTQACFFHDGPRG- 370
+ K L++E HK G+ V+LDVV++H +K N ++ DGT F G G
Sbjct: 556 EFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDA-DGTPRTSFGGGRLGT 614
Query: 371 THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
TH + SR R L+ ++++ +DE++ DGFRFD
Sbjct: 615 THEM--SR----------RILVDSIKYLVDEFKVDGFRFD 642
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PMID:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PMID:8798645). Length = 1111 |
| >gnl|CDD|237052 PRK12313, PRK12313, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 7e-06
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 694 YNKYGIHV-----QADNSVRCFEWAPSAQQL--YLT--GYNAVQLMAIMEHAYYASFGYQ 744
+ Y +H+ D R + A +L Y+ GY V+ M +MEH S+GYQ
Sbjct: 148 ISIYEVHLGSWKRNEDG--RPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQ 205
Query: 745 VTSFFAASSR 754
+T +FA +SR
Sbjct: 206 LTGYFAPTSR 215
|
Length = 633 |
| >gnl|CDD|233728 TIGR02102, pullulan_Gpos, pullulanase, extracellular, Gram-positive | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 7e-06
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 23/100 (23%)
Query: 1034 QLKYLVDECHKAGLYVLLDVVHSHASK---------NVLDGLNEFDGTQACFFHDGPRG- 1083
+ K L++E HK G+ V+LDVV++H +K N ++ DGT F G G
Sbjct: 556 EFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDA-DGTPRTSFGGGRLGT 614
Query: 1084 THPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
TH + SR R L+ ++++ ++E++ DGFRFD
Sbjct: 615 THEM--SR----------RILVDSIKYLVDEFKVDGFRFD 642
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PMID:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PMID:8798645). Length = 1111 |
| >gnl|CDD|200458 cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic domain found in eukaryotic Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 8e-06
Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 42/127 (33%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGT---------QACFFH 365
FGT + LK L HK G+Y+++DVV +H AS ++ C+
Sbjct: 94 FGTADDLKALSKALHKRGMYLMVDVVVNHMASAGPGSDVDYSSFVPFNDSSYYHPYCWIT 153
Query: 366 DGPRGTHPLWDSRLFNYSEIE--------------------VLRFLLSNLRWYLDEYQFD 405
D ++ N + +E V+ L ++ + Y D
Sbjct: 154 D--------YN----NQTSVEDCWLGDDVVALPDLNTENPFVVSTLNDWIKNLVSNYSID 201
Query: 406 GFRFDGV 412
G R D
Sbjct: 202 GLRIDTA 208
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes eukaryotic alpha-amylases including proteins from fungi, sponges, and protozoans. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 375 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV 77
FGTPE LKYL+D H G+ + VV
Sbjct: 84 FGTPEDLKYLIDTAHGMGIAVLLDVV 109
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 36/108 (33%)
Query: 925 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPD 984
GDFNNWN K +FG WE+ L P+ D
Sbjct: 132 GDFNNWNPNAHWMTKNEFGVWEIFL-------------------------------PDAD 160
Query: 985 GSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKYLVDECHKAGLFGTP 1032
GS + H S+VK+ + G +DR P +KY V G G P
Sbjct: 161 GSPAIPHGSRVKIRMETPDGRWVDRI--PAWIKYAVQAP---GEIGAP 203
|
Length = 758 |
| >gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 214 MAIPDKWIELLKKFKDEDWNMGNIVHTL-TNRRYMEKTVAYAESHDQALVGDKTIA 268
++ + W+ LL+ D++W+M IV TL N+ +K ++YAE+H+Q++ G K+ A
Sbjct: 635 LSPSEMWLSLLENVPDQEWSMSKIVSTLVKNKENADKMLSYAENHNQSISGGKSFA 690
|
Length = 897 |
| >gnl|CDD|200451 cd00551, AmyAc_family, Alpha amylase catalytic domain family | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 32/210 (15%), Positives = 51/210 (24%), Gaps = 72/210 (34%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
GT E K LV HK G+ V+LD+V +H
Sbjct: 72 LGTEEDFKELVKAAHKRGIKVILDLVFNH------------------------------- 100
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
++LRF L + DGFR D ++
Sbjct: 101 ----------DILRFWL--------DEGVDGFRLDAA-------------------KHVP 123
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIRPDMS 495
+ +L K P+ + + E G P G D + +
Sbjct: 124 KPEPVE---FLREIRKDAKLAKPDTLLLGE-AWGGPDELLAKAGFDDGLDSVFDFPLLEA 179
Query: 496 DMTVGTFDAAMNTTEERFKWLSADPGYVST 525
L+ + +
Sbjct: 180 LRDALKGGEGALAILAALLLLNPEGALLVN 209
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 260 |
| >gnl|CDD|200451 cd00551, AmyAc_family, Alpha amylase catalytic domain family | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 23/97 (23%), Positives = 30/97 (30%), Gaps = 49/97 (50%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
GT E K LV HK G+ V+LD+V +H
Sbjct: 72 LGTEEDFKELVKAAHKRGIKVILDLVFNH------------------------------- 100
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV 1125
++LRF L + DGFR D
Sbjct: 101 ----------DILRFWL--------DEGVDGFRLDAA 119
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 260 |
| >gnl|CDD|178782 PLN03244, PLN03244, alpha-amylase; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-05
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 29/140 (20%)
Query: 501 TFDAAMNTTEERFKWLSADPGYVSTKHEGDK--VIIFERAGLLFAFNFNGTQSFTDYRYC 558
+FD + +E LS G + H D VI F R LF FNF+ + S+ Y
Sbjct: 750 SFDKDLMDLDENEGILSR--GLPNIHHVKDAAMVISFMRGPFLFIFNFHPSNSYEGYD-- 805
Query: 559 STQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGT-VYETYPE 617
VGVE+AG+Y+++L+SD + +GG ++ + + +
Sbjct: 806 ----------------------VGVEEAGEYQIILNSDETKYGGQGIIEEDHYLQRSINK 843
Query: 618 PWNNRRNSIKLYLPTRTGLI 637
+ RN ++++LP+RT +
Sbjct: 844 RIDGLRNCLEVFLPSRTAQV 863
|
Length = 872 |
| >gnl|CDD|217237 pfam02806, Alpha-amylase_C, Alpha amylase, C-terminal all-beta domain | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 1214 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDE 1273
R G+ AG YK VL+SD +GG PW+ R + L LP + ++
Sbjct: 40 RTGLPVAGTYKDVLNSDAELYGGSGG--------CVTVPWDGR---LTLTLPPLSALVLH 88
Query: 1274 VN 1275
+
Sbjct: 89 LK 90
|
Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain. Length = 92 |
| >gnl|CDD|233730 TIGR02104, pulA_typeI, pullulanase, type I | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-05
Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Query: 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGT-QACFFHDGPRGTHPLWDSRL 1092
+LK ++ H+ G+ V++DVV++H + F+ T ++ GT + +
Sbjct: 230 ELKQMIQALHENGIRVIMDVVYNHTYSRE---ESPFEKTVPGYYYRYNEDGT-LSNGTGV 285
Query: 1093 FN--YSEIEVLR-FLLSNLRWYLEEYQFDGFRFD 1123
N SE E++R F++ ++ ++++EY DGFRFD
Sbjct: 286 GNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFD 319
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases. Length = 605 |
| >gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV 77
GTPE LKYL+D+ H GL M VV
Sbjct: 296 SGTPEDLKYLIDKAHSLGLRVLMDVV 321
|
Length = 758 |
| >gnl|CDD|237795 PRK14706, PRK14706, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 9e-05
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 77 VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 136
V GDFN+WN + ++LDFG W +P G + K V G +D++
Sbjct: 52 VSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARPG-------QRYKFRVTGAAGQTVDKM 104
Query: 137 SPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK------PKKPDNLKIYESHVG 187
P+ ++ P IW +D+ +WT ++ + IYE HVG
Sbjct: 105 DPYGSFFEVRP----NTASIIW----EDRFEWTDTRWMSSRTAGFDQPISIYEVHVG 153
|
Length = 639 |
| >gnl|CDD|237052 PRK12313, PRK12313, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 41/139 (29%)
Query: 507 NTTEERFKWLSADPGYVSTKHEGDK-VIIFERAG------LLFAFNFNGTQSFTDYRYCS 559
+ + + F+W+ AD + D+ V+ F R G L+ FNF + DYR
Sbjct: 521 DFSPDGFEWIDAD--------DADQSVLSFIRKGKNKGDFLVVVFNFTPVE-REDYR--- 568
Query: 560 TQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPW 619
+GV AG Y+ +L++D FGG + + GTV + PW
Sbjct: 569 ---------------------IGVPVAGIYEEILNTDSEEFGGSGKGNNGTV-KAQEGPW 606
Query: 620 NNRRNSIKLYLPTRTGLIL 638
+ R S+ L LP L+L
Sbjct: 607 HGRPQSLTLTLPPLGALVL 625
|
Length = 633 |
| >gnl|CDD|233730 TIGR02104, pulA_typeI, pullulanase, type I | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGT-QACFFHDGPRGTHPLWDSRL 379
+LK ++ H+ G+ V++DVV++H + F+ T ++ GT + +
Sbjct: 230 ELKQMIQALHENGIRVIMDVVYNHTYSRE---ESPFEKTVPGYYYRYNEDGT-LSNGTGV 285
Query: 380 FN--YSEIEVLR-FLLSNLRWYLDEYQFDGFRFD 410
N SE E++R F++ ++ +++ EY DGFRFD
Sbjct: 286 GNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFD 319
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases. Length = 605 |
| >gnl|CDD|214758 smart00642, Aamy, Alpha-amylase domain | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 17/108 (15%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
FGT E K LVD H G+ V+LDVV +H S DG D A F +G
Sbjct: 66 FGTMEDFKELVDAAHARGIKVILDVVINHTS----DGGFRLD--AAKFPLNGSA------ 113
Query: 376 DSRLFNYSEIEVLR----FLLSNLRWYLDEYQFDGFRFDGVTSMLYHN 419
L ++ + +L ++NL E DG +
Sbjct: 114 -FSLLDFFALALLLKILGIGMTNLPIIDYEQYRDGGGDPNMWWDGTCQ 160
|
Length = 166 |
| >gnl|CDD|214758 smart00642, Aamy, Alpha-amylase domain | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1059
FGT E K LVD H G+ V+LDVV +H S
Sbjct: 66 FGTMEDFKELVDAAHARGIKVILDVVINHTS 96
|
Length = 166 |
| >gnl|CDD|200489 cd11352, AmyAc_5, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 348
FGT E L+ LVD H G+YV+LD++ +H+
Sbjct: 97 FGTREDLRDLVDAAHARGIYVILDIILNHSGDV 129
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 443 |
| >gnl|CDD|200489 cd11352, AmyAc_5, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 1061
FGT E L+ LVD H G+YV+LD++ +H+
Sbjct: 97 FGTREDLRDLVDAAHARGIYVILDIILNHSGDV 129
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 443 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 2e-04
Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 19/118 (16%)
Query: 77 VCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 135
V GDFN W+ + + G WEL +P +G K + G LL +
Sbjct: 145 VSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEGEL-------YKFEILTADGELLLK 197
Query: 136 LSPWATYVTEPPVVGHAYEQRIWNPKP---QDKHKWTSSKPKKPDN---LKIYESHVG 187
P+A P A + + D W + K+ + IYE H+G
Sbjct: 198 ADPYAFAAEVRP--ATA--SIVADLSQYQWNDA-AWMEKRAKRNPLDAPISIYEVHLG 250
|
Length = 726 |
| >gnl|CDD|131155 TIGR02100, glgX_debranch, glycogen debranching enzyme GlgX | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-04
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 38/116 (32%)
Query: 1030 GTPEQLKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGP----RG- 1083
G + K +V H AG+ V+LDVV++H A N GP RG
Sbjct: 242 GQVAEFKTMVRALHDAGIEVILDVVYNHTAEGN----------------ELGPTLSFRGI 285
Query: 1084 -------THPLWDSRLFNY---------SEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
P N S VL+ ++ +LR+++ E DGFRFD
Sbjct: 286 DNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFD 341
|
This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 688 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 1214 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGII 1271
RVGV AG+++ VL++D + +GG + G W+ R S+ L LP ++
Sbjct: 568 RVGVPVAGRWREVLNTDLAEYGGSGAGNLGLPVSGEDILWHGREWSLSLTLPPLAALV 625
|
Length = 628 |
| >gnl|CDD|237052 PRK12313, PRK12313, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-04
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 1214 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 1265
R+GV AG Y+ +L++D FGG + + GTV + PW+ R S+ L LP
Sbjct: 568 RIGVPVAGIYEEILNTDSEEFGGSGKGNNGTV-KAQEGPWHGRPQSLTLTLP 618
|
Length = 633 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-04
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV 77
+GTPE K LVD H+AG+ + V
Sbjct: 210 YGTPEDFKALVDAAHQAGIGVILDWV 235
|
Length = 628 |
| >gnl|CDD|199885 cd02855, E_set_GBE_prok_N, N-terminal Early set domain associated with the catalytic domain of prokaryotic glycogen branching enzyme | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 6e-04
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 77 VCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 135
V GDFN+W+ +++ D G WEL +P +G K + G +L +
Sbjct: 33 VSVVGDFNDWDGRAHPMRRIGDSGVWELFIPGAKEGDL-------YKYEIETADGEVLLK 85
Query: 136 LSPWATYVTEPP 147
P+A Y P
Sbjct: 86 ADPYAFYAELRP 97
|
This subfamily is composed of predominantly prokaryotic 1,4 alpha glucan branching enzymes, also called glycogen branching enzymes. E or "early" set domains are associated with the catalytic domain of glycogen branching enzymes at the N-terminal end. Glycogen branching enzyme catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage, yielding a non-reducing end oligosaccharide chain, as well as the subsequent attachment of short glucosyl chains to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminal domain of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. Length = 105 |
| >gnl|CDD|223443 COG0366, AmyA, Glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 7e-04
Identities = 41/185 (22%), Positives = 66/185 (35%), Gaps = 50/185 (27%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH---------- 365
FGT E K LV+E HK G+ V+LD+V +H S + E ++
Sbjct: 73 FGTEEDFKELVEEAHKRGIKVILDLVFNHTS-DEHPWFKEARSSKPNPKRSDYYIWRDPD 131
Query: 366 -------------DGPRGTHPLWDSRL----------FNYSEIEVLRFLLSNLRWYLDEY 402
G T N+ EV LL ++++LD
Sbjct: 132 PDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWLD-K 190
Query: 403 QFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 462
DGFR D H + FGL + L +L +++L ++ P+++
Sbjct: 191 GVDGFRLDAAK---------------HISKDFGLPPSEENLTFLEEIHEYLREENPDVLI 235
Query: 463 IAEDV 467
E +
Sbjct: 236 YGEAI 240
|
Length = 505 |
| >gnl|CDD|237052 PRK12313, PRK12313, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 27/149 (18%)
Query: 75 HVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLD 134
VV GDFN+W + + G WE +P +G K + Q G+ ++
Sbjct: 53 SVV---GDFNDWRGNAHPLVRRESGVWEGFIPGAKEG-------QLYKYHISRQDGYQVE 102
Query: 135 RLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKW------TSSKPKKPDN--LKIYESHV 186
++ P+A Y P G A +W+ ++KW K + + IYE H+
Sbjct: 103 KIDPFAFYFEARP--GTA--SIVWDL---PEYKWKDGLWLARRKRWNALDRPISIYEVHL 155
Query: 187 G--ICTQEQKCASYEDFVRVVIPRIVKQG 213
G ++ + SY + +IP + + G
Sbjct: 156 GSWKRNEDGRPLSYRELADELIPYVKEMG 184
|
Length = 633 |
| >gnl|CDD|237795 PRK14706, PRK14706, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.001
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 579 HRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLIL 638
+R+GV Q G+Y+V+L +D +GGF P + E W+ + +S+ L LP + LIL
Sbjct: 562 YRIGVPQGGEYRVLLSTDDGEYGGFGTQQPDLMASQ--EGWHGQPHSLSLNLPPSSVLIL 619
|
Length = 639 |
| >gnl|CDD|131155 TIGR02100, glgX_debranch, glycogen debranching enzyme GlgX | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 38/116 (32%)
Query: 317 GTPEQLKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGP----RG- 370
G + K +V H AG+ V+LDVV++H A N GP RG
Sbjct: 242 GQVAEFKTMVRALHDAGIEVILDVVYNHTAEGN----------------ELGPTLSFRGI 285
Query: 371 -------THPLWDSRLFNY---------SEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
P N S VL+ ++ +LR+++ E DGFRFD
Sbjct: 286 DNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFD 341
|
This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 688 |
| >gnl|CDD|236543 PRK09505, malS, alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 356
GT L+ LVDE H+ G+ +L DVV +H L + EF
Sbjct: 288 MGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEF 328
|
Length = 683 |
| >gnl|CDD|236543 PRK09505, malS, alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 1069
GT L+ LVDE H+ G+ +L DVV +H L + EF
Sbjct: 288 MGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEF 328
|
Length = 683 |
| >gnl|CDD|237794 PRK14705, PRK14705, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.002
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 723 GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
G+ V+ M + EH + S+GYQVTS+FA +SR
Sbjct: 779 GFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSR 810
|
Length = 1224 |
| >gnl|CDD|237795 PRK14706, PRK14706, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.002
Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Query: 720 YLT--GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
Y+T GY V+L+ +MEH + S+GYQVT ++A +SR
Sbjct: 176 YVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSR 212
|
Length = 639 |
| >gnl|CDD|223443 COG0366, AmyA, Glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.002
Identities = 40/185 (21%), Positives = 66/185 (35%), Gaps = 50/185 (27%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH---------- 1078
FGT E K LV+E HK G+ V+LD+V +H S + E ++
Sbjct: 73 FGTEEDFKELVEEAHKRGIKVILDLVFNHTS-DEHPWFKEARSSKPNPKRSDYYIWRDPD 131
Query: 1079 -------------DGPRGTHPLWDSRL----------FNYSEIEVLRFLLSNLRWYLEEY 1115
G T N+ EV LL ++++L +
Sbjct: 132 PDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWL-DK 190
Query: 1116 QFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1175
DGFR D H + FGL + L +L +++L ++ P+++
Sbjct: 191 GVDGFRLDAAK---------------HISKDFGLPPSEENLTFLEEIHEYLREENPDVLI 235
Query: 1176 IAEDV 1180
E +
Sbjct: 236 YGEAI 240
|
Length = 505 |
| >gnl|CDD|200454 cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 27/115 (23%)
Query: 1030 GTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNE--FDGTQACFFHDGPRGTH 1085
GT + K L HK G+ +++DVV +H + ++ L D G
Sbjct: 65 GTEDDFKALCAAAHKYGIKIIVDVVFNHMANEGSAIEDLWYPSADIELFSPEDFHGNGGI 124
Query: 1086 PLWDSRLFNYSEIEVLRFLLSNL------RWYLEEYQ-----------FDGFRFD 1123
W+ R +V + L L +++ Q DGFRFD
Sbjct: 125 SNWNDRW------QVTQGRLGGLPDLNTENPAVQQQQKAYLKALVALGVDGFRFD 173
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Firmicutes, Proteobacteria, Actinobacteria, and Cyanobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 352 |
| >gnl|CDD|200455 cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 27/131 (20%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQACF--FHDGPRG 370
+GT E + L+ E HK G+ V++D+V +H S + + D + + D G
Sbjct: 66 YGTMEDFERLIAEAHKRGIKVIIDLVINHTSSEHPWFQEAASSPDSPYRDYYIWADDDPG 125
Query: 371 THPLWDSRL--------------------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
W + N V + +++LD+ DGFR D
Sbjct: 126 GWSSWGGNVWHKAGDGGYYYGAFWSGMPDLNLDNPAVREEIKKIAKFWLDK-GVDGFRLD 184
Query: 411 GVTSMLYHNHG 421
+Y N
Sbjct: 185 AAK-HIYENGE 194
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Chloroflexi, Dictyoglomi, and Fusobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 403 |
| >gnl|CDD|200455 cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 27/131 (20%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQACF--FHDGPRG 1083
+GT E + L+ E HK G+ V++D+V +H S + + D + + D G
Sbjct: 66 YGTMEDFERLIAEAHKRGIKVIIDLVINHTSSEHPWFQEAASSPDSPYRDYYIWADDDPG 125
Query: 1084 THPLWDSRL--------------------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
W + N V + +++L++ DGFR D
Sbjct: 126 GWSSWGGNVWHKAGDGGYYYGAFWSGMPDLNLDNPAVREEIKKIAKFWLDK-GVDGFRLD 184
Query: 1124 GVTSMLYHNHG 1134
+Y N
Sbjct: 185 AAK-HIYENGE 194
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Chloroflexi, Dictyoglomi, and Fusobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 403 |
| >gnl|CDD|200471 cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 37/135 (27%), Positives = 46/135 (34%), Gaps = 40/135 (29%)
Query: 315 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFHDG- 367
LFGT LV H+ GL V++D+V +H S + L F DG
Sbjct: 71 LFGTLADFDALVAAAHELGLRVIVDIVPNHTSDQHPWFQAALAAGPGSPERARYIFRDGR 130
Query: 368 -PRGTHPL--WDSR----------------------LF-------NYSEIEVLRFLLSNL 395
P G P W S LF N+ EV L
Sbjct: 131 GPDGELPPNNWQSVFGGPAWTRVTEPDGTDGQWYLHLFAPEQPDLNWDNPEVRAEFEDVL 190
Query: 396 RWYLDEYQFDGFRFD 410
R++LD DGFR D
Sbjct: 191 RFWLDR-GVDGFRID 204
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Trehalose synthase (EC 5.4.99.16) catalyzes the isomerization of maltose to produce trehalulose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 481 |
| >gnl|CDD|200480 cd11341, AmyAc_Pullulanase_LD-like, Alpha amylase catalytic domain found in Pullulanase (also called dextrinase; alpha-dextrin endo-1,6-alpha glucosidase), limit dextrinase, and related proteins | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 22/100 (22%)
Query: 1035 LKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGL--------NEFDGTQACFFHDGPRG 1083
K +V HK G+ V++DVV++H + + + + N DG F +G
Sbjct: 109 FKEMVQALHKNGIRVIMDVVYNHTYDSENSPFEKIVPGYYYRYNA-DGG----FSNGSGC 163
Query: 1084 THPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
+ R V ++++ +L+++ +EY+ DGFRFD
Sbjct: 164 GNDTASERPM------VRKYIIDSLKYWAKEYKIDGFRFD 197
|
Pullulanase is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. Pullulanases are very similar to limit dextrinases, although they differ in their action on glycogen and the rate of hydrolysis of limit dextrins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200453 cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 20/97 (20%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+G+ +L+ L+ H G+ V+ D+V +H ++ D G F P
Sbjct: 63 YGSEAELRSLIAALHAKGIKVIADIVINH--RSGPD-----TGE---DFGGAP------- 105
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 412
D +++ EV L + L W ++ FDG+RFD V
Sbjct: 106 D---LDHTNPEVQNDLKAWLNWLKNDIGFDGWRFDFV 139
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA from bacteria, archaea, water fleas, and plants. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 302 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 14 FGTPEQLKYLVDECHKAGLF 33
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 33 FGTPEQLKYLVDECHKAGLF 52
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
|
Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.003
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 14 FGTPEQLKYLVDECHKAGL 32
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.003
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.003
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 52 FGTPEQLKYLVDECHKAGL 70
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
|
Length = 726 |
| >gnl|CDD|237794 PRK14705, PRK14705, glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 81 GDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 139
GDFN W+ E + + L G WEL +P G+C K + + G +++ P
Sbjct: 656 GDFNGWDGREHSMRSLGSSGVWELFIPGVVAGAC-------YKFEILTKAGQWVEKADPL 708
Query: 140 ATYVTEPPVVGHAYEQRIWNPKPQDK-HKWTSSKPKK-PDN--LKIYESHVG 187
A PP+ R+ K +W S++ ++ P N + +YE H+G
Sbjct: 709 AFGTEVPPLTA----SRVVEASYAFKDAEWMSARAERDPHNSPMSVYEVHLG 756
|
Length = 1224 |
| >gnl|CDD|217288 pfam02922, CBM_48, Carbohydrate-binding module 48 (Isoamylase N-terminal domain) | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 955 GDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 1009
DFNNW+ EE ++ + G WE+ LP + L H + K V G + +
Sbjct: 29 LDFNNWDGEEHPMERKREGGVWEVFLPGD------LPHGGRYKYRVDGPDGPIKLK 78
|
This domain is found in a range of enzymes that act on branched substrates - isoamylase, pullulanase and branching enzyme. This family also contains the beta subunit of 5' AMP activated kinase. Length = 83 |
| >gnl|CDD|217288 pfam02922, CBM_48, Carbohydrate-binding module 48 (Isoamylase N-terminal domain) | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 12/62 (19%)
Query: 925 GDFNNWNREEFAYKKL-DFGKWELVLPPNPDGDFNNWNREEFAYK---KLDFGKWELVLP 980
DFNNW+ EE ++ + G WE+ LP + YK G +L L
Sbjct: 29 LDFNNWDGEEHPMERKREGGVWEVFLPGDLPHGGR--------YKYRVDGPDGPIKLKLD 80
Query: 981 PN 982
P
Sbjct: 81 PY 82
|
This domain is found in a range of enzymes that act on branched substrates - isoamylase, pullulanase and branching enzyme. This family also contains the beta subunit of 5' AMP activated kinase. Length = 83 |
| >gnl|CDD|200453 cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 20/97 (20%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+G+ +L+ L+ H G+ V+ D+V +H ++ D G F P
Sbjct: 63 YGSEAELRSLIAALHAKGIKVIADIVINH--RSGPD-----TGE---DFGGAP------- 105
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV 1125
D +++ EV L + L W + FDG+RFD V
Sbjct: 106 D---LDHTNPEVQNDLKAWLNWLKNDIGFDGWRFDFV 139
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA from bacteria, archaea, water fleas, and plants. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 302 |
| >gnl|CDD|200486 cd11348, AmyAc_2, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 346
+GT E L L DE HK G++VLLD+V H S
Sbjct: 66 YGTNEDLVRLFDEAHKRGIHVLLDLVPGHTS 96
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The catalytic triad (DED) is not present here. The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 429 |
| >gnl|CDD|200486 cd11348, AmyAc_2, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1059
+GT E L L DE HK G++VLLD+V H S
Sbjct: 66 YGTNEDLVRLFDEAHKRGIHVLLDLVPGHTS 96
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The catalytic triad (DED) is not present here. The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 429 |
| >gnl|CDD|235152 PRK03705, PRK03705, glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 1039 VDECHKAGLYVLLDVVHSHASKNVLDG----LNEFDGTQACFFHDGPRGTHPLWDS--RL 1092
V HKAG+ V+LDVV +H+++ LDG L D ++ G + W
Sbjct: 248 VKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGID--NRSYYWIREDGDYHNWTGCGNT 305
Query: 1093 FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 1128
N S V+ + + LR+++E DGFRFD T +
Sbjct: 306 LNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVL 341
|
Length = 658 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 13 SFGTPEQLKYLVDECHKAGL 32
+GTPE K LVD H+AG+
Sbjct: 209 RYGTPEDFKALVDAAHQAGI 228
|
Length = 628 |
| >gnl|CDD|188150 TIGR01515, branching_enzym, alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.004
Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 19/145 (13%)
Query: 77 VCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 135
V AGDFN W+ E ++ D G WEL +P +G K + +G + +
Sbjct: 42 VRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEG-------ELYKYEIVTNNGEIRLK 94
Query: 136 LSPWATYVTEPP-----VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVG--I 188
P+A Y P V W + + + + +KP + IYE H+G
Sbjct: 95 ADPYAFYAEVRPNTASLVYNLEGYS--WQDQKWQEKRKAKTPYEKP--VSIYELHLGSWR 150
Query: 189 CTQEQKCASYEDFVRVVIPRIVKQG 213
+ + SY + +IP + + G
Sbjct: 151 KHSDGRHLSYRELADQLIPYVKELG 175
|
This model describes the glycogen branching enzymes which are responsible for the transfer of chains of approx. 7 alpha(1--4)-linked glucosyl residues to other similar chains (in new alpha(1--6) linkages) in the biosynthesis of glycogen. This enzyme is a member of the broader amylase family of starch hydrolases which fold as (beta/alpha)8 barrels, the so-called TIM-barrel structure. All of the sequences comprising the seed of this model have been experimentally characterized. (For instance,). This model encompasses both bacterial and eukaryotic species. No archaea have this enzyme, although Aquifex aolicus does. Two species, Bacillus thuringiensis and Clostridium perfringens have two sequences each which are annotated as amylases. These annotations are aparrently in error. GP|18143720 from C. perfringens, for instance, contains the note "674 aa, similar to gp:A14658_1 amylase (1,4-alpha-glucan branching enzyme (EC 2.4.1.18) ) from Bacillus thuringiensis (648 aa); 51.1% identity in 632 aa overlap." A branching enzyme from Porphyromonas gingivales, OMNI|PG1793, appears to be more closely related to the eukaryotic species (across a deep phylogenetic split) and may represent an instance of lateral transfer from this species' host. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 618 |
| >gnl|CDD|200454 cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.004
Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 27/115 (23%)
Query: 317 GTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNE--FDGTQACFFHDGPRGTH 372
GT + K L HK G+ +++DVV +H + ++ L D G
Sbjct: 65 GTEDDFKALCAAAHKYGIKIIVDVVFNHMANEGSAIEDLWYPSADIELFSPEDFHGNGGI 124
Query: 373 PLWDSRLFNYSEIEVLRFLLSNL------RWYLDEYQ-----------FDGFRFD 410
W+ R +V + L L + + Q DGFRFD
Sbjct: 125 SNWNDRW------QVTQGRLGGLPDLNTENPAVQQQQKAYLKALVALGVDGFRFD 173
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Firmicutes, Proteobacteria, Actinobacteria, and Cyanobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 352 |
| >gnl|CDD|200480 cd11341, AmyAc_Pullulanase_LD-like, Alpha amylase catalytic domain found in Pullulanase (also called dextrinase; alpha-dextrin endo-1,6-alpha glucosidase), limit dextrinase, and related proteins | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.004
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 22/100 (22%)
Query: 322 LKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGL--------NEFDGTQACFFHDGPRG 370
K +V HK G+ V++DVV++H + + + + N DG F +G
Sbjct: 109 FKEMVQALHKNGIRVIMDVVYNHTYDSENSPFEKIVPGYYYRYNA-DGG----FSNGSGC 163
Query: 371 THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
+ R V ++++ +L+++ EY+ DGFRFD
Sbjct: 164 GNDTASERPM------VRKYIIDSLKYWAKEYKIDGFRFD 197
|
Pullulanase is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. Pullulanases are very similar to limit dextrinases, although they differ in their action on glycogen and the rate of hydrolysis of limit dextrins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1351 | |||
| PLN02447 | 758 | 1,4-alpha-glucan-branching enzyme | 100.0 | |
| PRK12568 | 730 | glycogen branching enzyme; Provisional | 100.0 | |
| PRK14705 | 1224 | glycogen branching enzyme; Provisional | 100.0 | |
| PRK14706 | 639 | glycogen branching enzyme; Provisional | 100.0 | |
| PLN02960 | 897 | alpha-amylase | 100.0 | |
| PLN02447 | 758 | 1,4-alpha-glucan-branching enzyme | 100.0 | |
| PRK05402 | 726 | glycogen branching enzyme; Provisional | 100.0 | |
| COG0296 | 628 | GlgB 1,4-alpha-glucan branching enzyme [Carbohydra | 100.0 | |
| TIGR01515 | 613 | branching_enzym alpha-1,4-glucan:alpha-1,4-glucan | 100.0 | |
| PRK12313 | 633 | glycogen branching enzyme; Provisional | 100.0 | |
| PLN03244 | 872 | alpha-amylase; Provisional | 100.0 | |
| KOG0470|consensus | 757 | 100.0 | ||
| KOG0470|consensus | 757 | 100.0 | ||
| PLN03244 | 872 | alpha-amylase; Provisional | 100.0 | |
| PLN02960 | 897 | alpha-amylase | 100.0 | |
| PRK14706 | 639 | glycogen branching enzyme; Provisional | 100.0 | |
| PRK12568 | 730 | glycogen branching enzyme; Provisional | 100.0 | |
| PRK14705 | 1224 | glycogen branching enzyme; Provisional | 100.0 | |
| TIGR01515 | 613 | branching_enzym alpha-1,4-glucan:alpha-1,4-glucan | 100.0 | |
| PRK05402 | 726 | glycogen branching enzyme; Provisional | 100.0 | |
| PRK12313 | 633 | glycogen branching enzyme; Provisional | 100.0 | |
| COG0296 | 628 | GlgB 1,4-alpha-glucan branching enzyme [Carbohydra | 100.0 | |
| TIGR02104 | 605 | pulA_typeI pullulanase, type I. Pullulan is an unu | 100.0 | |
| TIGR02103 | 898 | pullul_strch alpha-1,6-glucosidases, pullulanase-t | 100.0 | |
| PRK03705 | 658 | glycogen debranching enzyme; Provisional | 100.0 | |
| TIGR02104 | 605 | pulA_typeI pullulanase, type I. Pullulan is an unu | 100.0 | |
| PLN02877 | 970 | alpha-amylase/limit dextrinase | 100.0 | |
| TIGR02100 | 688 | glgX_debranch glycogen debranching enzyme GlgX. Th | 100.0 | |
| TIGR02402 | 542 | trehalose_TreZ malto-oligosyltrehalose trehalohydr | 100.0 | |
| TIGR02102 | 1111 | pullulan_Gpos pullulanase, extracellular, Gram-pos | 100.0 | |
| TIGR02100 | 688 | glgX_debranch glycogen debranching enzyme GlgX. Th | 100.0 | |
| PRK03705 | 658 | glycogen debranching enzyme; Provisional | 100.0 | |
| TIGR02102 | 1111 | pullulan_Gpos pullulanase, extracellular, Gram-pos | 100.0 | |
| COG1523 | 697 | PulA Type II secretory pathway, pullulanase PulA a | 100.0 | |
| TIGR02402 | 542 | trehalose_TreZ malto-oligosyltrehalose trehalohydr | 100.0 | |
| COG1523 | 697 | PulA Type II secretory pathway, pullulanase PulA a | 100.0 | |
| PRK14510 | 1221 | putative bifunctional 4-alpha-glucanotransferase/g | 100.0 | |
| TIGR02103 | 898 | pullul_strch alpha-1,6-glucosidases, pullulanase-t | 100.0 | |
| PLN02877 | 970 | alpha-amylase/limit dextrinase | 100.0 | |
| PRK14510 | 1221 | putative bifunctional 4-alpha-glucanotransferase/g | 100.0 | |
| PRK10785 | 598 | maltodextrin glucosidase; Provisional | 100.0 | |
| TIGR02456 | 539 | treS_nterm trehalose synthase. Trehalose synthase | 100.0 | |
| TIGR02403 | 543 | trehalose_treC alpha,alpha-phosphotrehalase. Treha | 100.0 | |
| PRK10933 | 551 | trehalose-6-phosphate hydrolase; Provisional | 100.0 | |
| PRK10785 | 598 | maltodextrin glucosidase; Provisional | 100.0 | |
| TIGR02456 | 539 | treS_nterm trehalose synthase. Trehalose synthase | 100.0 | |
| TIGR02403 | 543 | trehalose_treC alpha,alpha-phosphotrehalase. Treha | 100.0 | |
| PRK09441 | 479 | cytoplasmic alpha-amylase; Reviewed | 100.0 | |
| PRK09505 | 683 | malS alpha-amylase; Reviewed | 100.0 | |
| PRK10933 | 551 | trehalose-6-phosphate hydrolase; Provisional | 99.98 | |
| PF00128 | 316 | Alpha-amylase: Alpha amylase, catalytic domain; In | 99.98 | |
| PRK09505 | 683 | malS alpha-amylase; Reviewed | 99.97 | |
| PRK09441 | 479 | cytoplasmic alpha-amylase; Reviewed | 99.97 | |
| PLN00196 | 428 | alpha-amylase; Provisional | 99.96 | |
| PF00128 | 316 | Alpha-amylase: Alpha amylase, catalytic domain; In | 99.96 | |
| PLN02361 | 401 | alpha-amylase | 99.96 | |
| PLN00196 | 428 | alpha-amylase; Provisional | 99.95 | |
| PLN02784 | 894 | alpha-amylase | 99.94 | |
| COG0366 | 505 | AmyA Glycosidases [Carbohydrate transport and meta | 99.93 | |
| PLN02361 | 401 | alpha-amylase | 99.92 | |
| PRK13840 | 495 | sucrose phosphorylase; Provisional | 99.9 | |
| COG0366 | 505 | AmyA Glycosidases [Carbohydrate transport and meta | 99.9 | |
| TIGR03852 | 470 | sucrose_gtfA sucrose phosphorylase. In the forward | 99.89 | |
| TIGR02455 | 688 | TreS_stutzeri trehalose synthase, Pseudomonas stut | 99.89 | |
| PLN02784 | 894 | alpha-amylase | 99.88 | |
| TIGR03852 | 470 | sucrose_gtfA sucrose phosphorylase. In the forward | 99.88 | |
| PRK13840 | 495 | sucrose phosphorylase; Provisional | 99.84 | |
| TIGR02455 | 688 | TreS_stutzeri trehalose synthase, Pseudomonas stut | 99.83 | |
| KOG0471|consensus | 545 | 99.82 | ||
| KOG0471|consensus | 545 | 99.77 | ||
| TIGR02401 | 825 | trehalose_TreY malto-oligosyltrehalose synthase. T | 99.73 | |
| smart00642 | 166 | Aamy Alpha-amylase domain. | 99.7 | |
| PF14872 | 811 | GHL5: Hypothetical glycoside hydrolase 5 | 99.68 | |
| cd02854 | 99 | Glycogen_branching_enzyme_like_N_term Glycogen bra | 99.66 | |
| TIGR02401 | 825 | trehalose_TreY malto-oligosyltrehalose synthase. T | 99.59 | |
| cd02854 | 99 | Glycogen_branching_enzyme_like_N_term Glycogen bra | 99.57 | |
| PRK14507 | 1693 | putative bifunctional 4-alpha-glucanotransferase/m | 99.37 | |
| PRK14511 | 879 | maltooligosyl trehalose synthase; Provisional | 99.35 | |
| cd02860 | 100 | Pullulanase_N_term Pullulanase domain N-terminus. | 99.35 | |
| KOG2212|consensus | 504 | 99.34 | ||
| PF02806 | 95 | Alpha-amylase_C: Alpha amylase, C-terminal all-bet | 99.31 | |
| smart00642 | 166 | Aamy Alpha-amylase domain. | 99.27 | |
| PF14872 | 811 | GHL5: Hypothetical glycoside hydrolase 5 | 99.21 | |
| PF02922 | 85 | CBM_48: Carbohydrate-binding module 48 (Isoamylase | 99.05 | |
| KOG2212|consensus | 504 | 99.05 | ||
| cd02860 | 100 | Pullulanase_N_term Pullulanase domain N-terminus. | 99.03 | |
| TIGR01531 | 1464 | glyc_debranch glycogen debranching enzymye. glycog | 99.0 | |
| COG3280 | 889 | TreY Maltooligosyl trehalose synthase [Carbohydrat | 98.97 | |
| cd02856 | 103 | Glycogen_debranching_enzyme_N_term Glycogen_debran | 98.9 | |
| cd02853 | 85 | MTHase_N_term Maltooligosyl trehalose synthase (MT | 98.88 | |
| PF02922 | 85 | CBM_48: Carbohydrate-binding module 48 (Isoamylase | 98.87 | |
| PRK14511 | 879 | maltooligosyl trehalose synthase; Provisional | 98.87 | |
| cd02855 | 106 | Glycogen_branching_enzyme_N_term Glycogen branchin | 98.83 | |
| cd02855 | 106 | Glycogen_branching_enzyme_N_term Glycogen branchin | 98.82 | |
| cd02852 | 119 | Isoamylase_N_term Isoamylase N-terminus domain. Is | 98.8 | |
| PRK14507 | 1693 | putative bifunctional 4-alpha-glucanotransferase/m | 98.78 | |
| COG3280 | 889 | TreY Maltooligosyl trehalose synthase [Carbohydrat | 98.68 | |
| cd02856 | 103 | Glycogen_debranching_enzyme_N_term Glycogen_debran | 98.65 | |
| cd02852 | 119 | Isoamylase_N_term Isoamylase N-terminus domain. Is | 98.53 | |
| TIGR01531 | 1464 | glyc_debranch glycogen debranching enzymye. glycog | 98.43 | |
| cd02853 | 85 | MTHase_N_term Maltooligosyl trehalose synthase (MT | 98.35 | |
| cd02858 | 85 | Esterase_N_term Esterase N-terminal domain. Estera | 98.28 | |
| cd02861 | 82 | E_set_proteins_like E or "early" set-like proteins | 98.26 | |
| PF02638 | 311 | DUF187: Glycosyl hydrolase like GH101; InterPro: I | 98.24 | |
| PF11941 | 89 | DUF3459: Domain of unknown function (DUF3459); Int | 98.17 | |
| cd02858 | 85 | Esterase_N_term Esterase N-terminal domain. Estera | 98.1 | |
| PF14701 | 423 | hDGE_amylase: glucanotransferase domain of human g | 97.9 | |
| cd02859 | 79 | AMPKbeta_GBD_like AMP-activated protein kinase (AM | 97.8 | |
| PF14871 | 132 | GHL6: Hypothetical glycosyl hydrolase 6 | 97.54 | |
| PF02324 | 809 | Glyco_hydro_70: Glycosyl hydrolase family 70; Inte | 97.49 | |
| PF02638 | 311 | DUF187: Glycosyl hydrolase like GH101; InterPro: I | 97.43 | |
| cd02861 | 82 | E_set_proteins_like E or "early" set-like proteins | 97.29 | |
| COG1649 | 418 | Uncharacterized protein conserved in bacteria [Fun | 97.15 | |
| cd02688 | 83 | E_set E or "early" set of sugar utilizing enzymes | 96.95 | |
| PF14871 | 132 | GHL6: Hypothetical glycosyl hydrolase 6 | 96.52 | |
| cd06597 | 340 | GH31_transferase_CtsY CtsY (cyclic tetrasaccharide | 96.52 | |
| PF02065 | 394 | Melibiase: Melibiase; InterPro: IPR000111 O-Glycos | 96.38 | |
| cd06597 | 340 | GH31_transferase_CtsY CtsY (cyclic tetrasaccharide | 96.37 | |
| cd06593 | 308 | GH31_xylosidase_YicI YicI alpha-xylosidase is a gl | 96.27 | |
| cd02688 | 83 | E_set E or "early" set of sugar utilizing enzymes | 96.12 | |
| cd06593 | 308 | GH31_xylosidase_YicI YicI alpha-xylosidase is a gl | 96.08 | |
| cd06592 | 303 | GH31_glucosidase_KIAA1161 KIAA1161 is an uncharact | 95.96 | |
| cd06594 | 317 | GH31_glucosidase_YihQ YihQ is a bacterial alpha-gl | 95.79 | |
| cd06592 | 303 | GH31_glucosidase_KIAA1161 KIAA1161 is an uncharact | 95.68 | |
| PF02065 | 394 | Melibiase: Melibiase; InterPro: IPR000111 O-Glycos | 95.67 | |
| cd06594 | 317 | GH31_glucosidase_YihQ YihQ is a bacterial alpha-gl | 95.62 | |
| COG1649 | 418 | Uncharacterized protein conserved in bacteria [Fun | 95.59 | |
| KOG3625|consensus | 1521 | 95.35 | ||
| cd06600 | 317 | GH31_MGAM-like This family includes the following | 95.21 | |
| cd06600 | 317 | GH31_MGAM-like This family includes the following | 95.2 | |
| cd06591 | 319 | GH31_xylosidase_XylS XylS is a glycosyl hydrolase | 94.88 | |
| cd06599 | 317 | GH31_glycosidase_Aec37 Glycosyl hydrolase family 3 | 94.77 | |
| cd06602 | 339 | GH31_MGAM_SI_GAA This family includes the followin | 94.72 | |
| cd06591 | 319 | GH31_xylosidase_XylS XylS is a glycosyl hydrolase | 94.62 | |
| PF14701 | 423 | hDGE_amylase: glucanotransferase domain of human g | 94.45 | |
| cd06602 | 339 | GH31_MGAM_SI_GAA This family includes the followin | 94.29 | |
| cd06599 | 317 | GH31_glycosidase_Aec37 Glycosyl hydrolase family 3 | 94.1 | |
| PF13199 | 559 | Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: | 93.61 | |
| PF02324 | 809 | Glyco_hydro_70: Glycosyl hydrolase family 70; Inte | 93.52 | |
| TIGR01370 | 315 | cysRS possible cysteinyl-tRNA synthetase, Methanoc | 93.49 | |
| PF13199 | 559 | Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: | 93.21 | |
| PF00150 | 281 | Cellulase: Cellulase (glycosyl hydrolase family 5) | 92.2 | |
| cd06604 | 339 | GH31_glucosidase_II_MalA Alpha-glucosidase II (alp | 91.96 | |
| PRK10658 | 665 | putative alpha-glucosidase; Provisional | 91.93 | |
| PRK10426 | 635 | alpha-glucosidase; Provisional | 91.69 | |
| cd06595 | 292 | GH31_xylosidase_XylS-like This family represents a | 91.6 | |
| cd06604 | 339 | GH31_glucosidase_II_MalA Alpha-glucosidase II (alp | 91.58 | |
| PLN02950 | 909 | 4-alpha-glucanotransferase | 91.56 | |
| PRK10426 | 635 | alpha-glucosidase; Provisional | 91.4 | |
| cd06598 | 317 | GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide | 91.23 | |
| PRK10658 | 665 | putative alpha-glucosidase; Provisional | 91.14 | |
| PF13200 | 316 | DUF4015: Putative glycosyl hydrolase domain | 90.84 | |
| cd06595 | 292 | GH31_xylosidase_XylS-like This family represents a | 90.82 | |
| PF01055 | 441 | Glyco_hydro_31: Glycosyl hydrolases family 31 ; In | 90.49 | |
| cd06598 | 317 | GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide | 90.32 | |
| PF01055 | 441 | Glyco_hydro_31: Glycosyl hydrolases family 31 ; In | 90.21 | |
| COG1501 | 772 | Alpha-glucosidases, family 31 of glycosyl hydrolas | 90.02 | |
| cd05808 | 95 | CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2 | 90.02 | |
| cd02875 | 358 | GH18_chitobiase Chitobiase (also known as di-N-ace | 89.92 | |
| cd06542 | 255 | GH18_EndoS-like Endo-beta-N-acetylglucosaminidases | 89.63 | |
| PF13200 | 316 | DUF4015: Putative glycosyl hydrolase domain | 89.49 | |
| TIGR01370 | 315 | cysRS possible cysteinyl-tRNA synthetase, Methanoc | 88.92 | |
| cd02875 | 358 | GH18_chitobiase Chitobiase (also known as di-N-ace | 88.9 | |
| cd06603 | 339 | GH31_GANC_GANAB_alpha This family includes the clo | 88.07 | |
| smart00632 | 81 | Aamy_C Aamy_C domain. | 87.61 | |
| cd06603 | 339 | GH31_GANC_GANAB_alpha This family includes the clo | 87.57 | |
| PF00150 | 281 | Cellulase: Cellulase (glycosyl hydrolase family 5) | 87.27 | |
| cd06601 | 332 | GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) | 86.67 | |
| PLN02763 | 978 | hydrolase, hydrolyzing O-glycosyl compounds | 86.48 | |
| PF07745 | 332 | Glyco_hydro_53: Glycosyl hydrolase family 53; Inte | 86.32 | |
| cd06542 | 255 | GH18_EndoS-like Endo-beta-N-acetylglucosaminidases | 85.62 | |
| PF00686 | 96 | CBM_20: Starch binding domain; InterPro: IPR002044 | 85.61 | |
| COG1501 | 772 | Alpha-glucosidases, family 31 of glycosyl hydrolas | 84.84 | |
| PLN02635 | 538 | disproportionating enzyme | 84.74 | |
| PLN02763 | 978 | hydrolase, hydrolyzing O-glycosyl compounds | 84.35 | |
| cd06601 | 332 | GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) | 84.04 | |
| PF11852 | 168 | DUF3372: Domain of unknown function (DUF3372); Int | 83.75 | |
| PRK14582 | 671 | pgaB outer membrane N-deacetylase; Provisional | 82.7 | |
| PF10438 | 78 | Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal | 81.77 | |
| PRK14508 | 497 | 4-alpha-glucanotransferase; Provisional | 81.44 | |
| cd06545 | 253 | GH18_3CO4_chitinase The Bacteroides thetaiotaomicr | 80.97 | |
| COG3867 | 403 | Arabinogalactan endo-1,4-beta-galactosidase [Carbo | 80.82 | |
| cd02871 | 312 | GH18_chitinase_D-like GH18 domain of Chitinase D ( | 80.7 |
| >PLN02447 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-90 Score=856.07 Aligned_cols=523 Identities=46% Similarity=0.839 Sum_probs=469.4
Q ss_pred HHHHHhhhccCCCCChhhhhHhhhccc-ccCCCCCccccccccccccCceeEEE-----EEEEEEEeecCCCCcccccee
Q psy9001 21 KYLVDECHKAGLFGTPEQLKYLVDECH-KAGLFGTPEQLKYLVDECHKAGLLCF-----MHVVCAAGDFNNWNREEFAYK 94 (1351)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~l~~l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~ 94 (1351)
-|...+.+|+..| .+..++|++.. +-+.|+.. ...+|.. ..++|++|+ |++|+|+||||+|++..++|+
T Consensus 71 ~~~~~~~~r~~~~---~~~~~~i~~~~~~l~~f~~~-y~~lGa~-~~~~g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~ 145 (758)
T PLN02447 71 PYEDHLRYRYSRY---RRRREEIEKNEGGLEAFSRG-YEKFGFN-RSEGGITYREWAPGAKAAALIGDFNNWNPNAHWMT 145 (758)
T ss_pred hHHHHHHHHHHHH---HHHHHHHhhcCCCHHHHHHH-HHhceeE-EecCCEEEEEECCCCCEEEEEEecCCCCCCccCce
Confidence 4666788888888 88888888544 34557653 4444444 455899999 999999999999999899999
Q ss_pred ecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEEecCCCC-ccceeeeeeCCCCCCCCccCCCCC
Q psy9001 95 KLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVV-GHAYEQRIWNPKPQDKHKWTSSKP 173 (1351)
Q Consensus 95 k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~~-~~~~~~~~~~p~~~~~~~w~~~~p 173 (1351)
+.++|+|+++||+ .+|.|+++||++|||+|++.+|....++||||++++.++.. +.++++++|+|+..++|.|++.+|
T Consensus 146 ~~~~GvWe~~ip~-~~g~~~~~~G~~Yky~i~~~~g~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~~~~y~w~~~~~ 224 (758)
T PLN02447 146 KNEFGVWEIFLPD-ADGSPAIPHGSRVKIRMETPDGRWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRP 224 (758)
T ss_pred eCCCCEEEEEECC-ccccccCCCCCEEEEEEEeCCCcEEeecCchHheeeccCCccCCCCceEEeCCCCCCCCCCCCCCC
Confidence 9889999999999 77878999999999999998898899999999999998752 456788999996445799999888
Q ss_pred CCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccc
Q psy9001 174 KKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 253 (1351)
Q Consensus 174 ~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~ 253 (1351)
+.+.+++|||+|||+|+++...|+|+++++++|||||+||||+ ||||| ++|+ +.
T Consensus 225 ~~~~~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~----I~LmP--------------------i~e~--~~ 278 (758)
T PLN02447 225 PRPAALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNA----VQLMA--------------------IQEH--AY 278 (758)
T ss_pred CCCCCCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCE----EEECC--------------------cccc--CC
Confidence 7778999999999999988889999999988899999999999 99999 4454 55
Q ss_pred cCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcC
Q psy9001 254 AESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 333 (1351)
Q Consensus 254 ~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~G 333 (1351)
.++ |||++++|| +++ ++||+++|||+||++||++|
T Consensus 279 ~~~-----wGY~~~~~f---------------------a~~-------------------~~~Gtp~dlk~LVd~aH~~G 313 (758)
T PLN02447 279 YGS-----FGYHVTNFF---------------------AVS-------------------SRSGTPEDLKYLIDKAHSLG 313 (758)
T ss_pred CCC-----CCcCcccCc---------------------ccc-------------------cccCCHHHHHHHHHHHHHCC
Confidence 555 999999999 887 89999999999999999999
Q ss_pred CEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccc
Q psy9001 334 LYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 334 I~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~ 413 (1351)
|+||||||+||++.+...++..|+|+...||+.++.+.+..|++.+||+++++||+||+++++||++||||||||||++.
T Consensus 314 I~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~ 393 (758)
T PLN02447 314 LRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVT 393 (758)
T ss_pred CEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchh
Confidence 99999999999998866778889998878888777777788988899999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cC
Q psy9001 414 SMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IR 491 (1351)
Q Consensus 414 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~ 491 (1351)
+|+|+++|.+.+|++++.+++++++|.+++.||+++|+.||+.+|++++|||+++++|.+|+|++.||+||||+|+ |+
T Consensus 394 smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l~~p~~~GGlGFDykw~Mg~~ 473 (758)
T PLN02447 394 SMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPVQEGGVGFDYRLAMAIP 473 (758)
T ss_pred hhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCccccCCCCcCCcceEECCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred CCC------------------------------------------CCCc-------------------------------
Q psy9001 492 PDM------------------------------------------SDMT------------------------------- 498 (1351)
Q Consensus 492 ~d~------------------------------------------~~~s------------------------------- 498 (1351)
++. ++++
T Consensus 474 ~~~l~~l~~~~d~~~~~~~l~~sl~~r~~~E~~I~y~eSHDevv~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lh 553 (758)
T PLN02447 474 DKWIELLKEKRDEDWSMGDIVHTLTNRRYTEKCVAYAESHDQALVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALH 553 (758)
T ss_pred hHHHHHHhhCCCcccCHHHHHHHHhcccccCceEeccCCcCeeecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHH
Confidence 653 1111
Q ss_pred -----------------------------------------------------------HHHHHHHHHHhhhcccccccC
Q psy9001 499 -----------------------------------------------------------VGTFDAAMNTTEERFKWLSAD 519 (1351)
Q Consensus 499 -----------------------------------------------------------l~~f~k~L~~Lr~~~~~L~~g 519 (1351)
|++|+|+||+|++++++|..+
T Consensus 554 kmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws~~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~ 633 (758)
T PLN02447 554 KMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSYDKCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSE 633 (758)
T ss_pred HHHHHHHHhCCCCcceeecccccCCchhccCcccccccCcccccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCC
Confidence 256999999999999999999
Q ss_pred CcceEeecCCCcEEEEEeCceEEEEeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEccCCCCc
Q psy9001 520 PGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSH 599 (1351)
Q Consensus 520 ~~~~~~~~~~~~Vlaf~R~~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vlnsD~~~ 599 (1351)
..++...+++++||+|.|..|||||||+|++++.+|+ ||||.+|+|++|||||+.+
T Consensus 634 ~~~i~~~d~~~~Viaf~R~~ll~V~NF~p~~s~~~Y~------------------------igvp~~G~y~~ilnSD~~~ 689 (758)
T PLN02447 634 HQYVSRKDEGDKVIVFERGDLVFVFNFHPTNSYSDYR------------------------VGCDKPGKYKIVLDSDAWE 689 (758)
T ss_pred CceeeeecCCCCEEEEEeCCeEEEEeCCCCCCCCCcE------------------------ECCCCCCeEEEEECCCchh
Confidence 8899999999999999999999999999977899999 9999999999999999999
Q ss_pred cCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEECCCC
Q psy9001 600 FGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTTSPGT 644 (1351)
Q Consensus 600 ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~~~~~ 644 (1351)
|||+++++..+.+.+++.+|+|+++||.|+|||++++||++.++.
T Consensus 690 fGG~~~~~~~~~~~~~~~~~~~~~~s~~v~iP~~~~~vl~~~~~~ 734 (758)
T PLN02447 690 FGGFGRVDHDADHFTPEGNFDNRPHSFMVYAPSRTAVVYAPVDED 734 (758)
T ss_pred cCCCCccCCCccEEecccCcCCCCcEEEEEeCCceEEEEEECCcc
Confidence 999999876666888999999999999999999999999998654
|
|
| >PRK12568 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-82 Score=781.14 Aligned_cols=463 Identities=28% Similarity=0.506 Sum_probs=399.1
Q ss_pred cCceeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcc
Q psy9001 66 HKAGLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140 (1351)
Q Consensus 66 ~~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA 140 (1351)
...||+|+ |++|+|+||||+|++..+||++..+|+|+++||++.+| ..|||+|++.+|+...++||||
T Consensus 136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~G-------~~YKYeI~~~~G~~~~k~DPYA 208 (730)
T PRK12568 136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAG-------ARYKYAITAADGRVLLKADPVA 208 (730)
T ss_pred CCCcEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCCCC-------CEEEEEEEcCCCeEeecCCCcc
Confidence 35699999 99999999999999999999988899999999998766 5999999988898889999999
Q ss_pred eEEecCCC-Cccceee--eeeCCCCCCCCccCCCCCC--CCCCceEEEEecCCccCC--CCCCCHHHHHHhhhHHHHHcC
Q psy9001 141 TYVTEPPV-VGHAYEQ--RIWNPKPQDKHKWTSSKPK--KPDNLKIYESHVGICTQE--QKCASYEDFVRVVIPRIVKQG 213 (1351)
Q Consensus 141 ~~~~~~~~-~~~~~~~--~~~~p~~~~~~~w~~~~p~--~~~~~vIYE~hvr~ft~~--~~~G~~~gi~~~~L~yLk~LG 213 (1351)
++++.++. +|++.+. ..|.+. .|...+++ ..++++|||+|+|+|+.. ...++|+++++++|||||+||
T Consensus 209 ~~~e~~p~~asvV~~~~~~~W~d~-----~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LG 283 (730)
T PRK12568 209 RQTELPPATASVVPSAAAFAWTDA-----AWMARRDPAAVPAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLG 283 (730)
T ss_pred eEeecCCCCCeEEcCCCCCCCCCh-----hhhhcccccCCCCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcC
Confidence 99999886 4555431 123222 34443432 468999999999999853 457899999999889999999
Q ss_pred CCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccc
Q psy9001 214 MAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRA 293 (1351)
Q Consensus 214 vt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~ 293 (1351)
||+ ||||| +.|+ |..++ |||++++|| ++
T Consensus 284 vt~----I~LmP--------------------i~e~--~~~~~-----wGY~~~~~~---------------------a~ 311 (730)
T PRK12568 284 FTH----IELLP--------------------ITEH--PFGGS-----WGYQPLGLY---------------------AP 311 (730)
T ss_pred CCE----EEECc--------------------cccC--CCCCC-----CCCCCCcCC---------------------cc
Confidence 999 99999 4444 54444 999999999 88
Q ss_pred cccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccC-CCCCC
Q psy9001 294 CEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG-PRGTH 372 (1351)
Q Consensus 294 ~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~-~~~~~ 372 (1351)
+ ++||+++|||+||++||++||+||||+|+||++.+ ..++..|+|. ..|.+.+ ..+.+
T Consensus 312 ~-------------------~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d-~~~l~~fdg~-~~Ye~~d~~~g~~ 370 (730)
T PRK12568 312 T-------------------ARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDD-AHGLAQFDGA-ALYEHADPREGMH 370 (730)
T ss_pred C-------------------cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcc-ccccccCCCc-cccccCCCcCCcc
Confidence 8 99999999999999999999999999999999987 4567788886 3444433 34678
Q ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHH
Q psy9001 373 PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKF 452 (1351)
Q Consensus 373 ~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~ 452 (1351)
.+|++..||+++|+||+||+++++||++||||||||+|++.+|++.++++..+.+ ..+.+|++.|.++++||+++|+.
T Consensus 371 ~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w--~pn~~gg~en~ea~~Fl~~ln~~ 448 (730)
T PRK12568 371 RDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEW--VPNAHGGRENLEAVAFLRQLNRE 448 (730)
T ss_pred CCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccc--cccccCCccChHHHHHHHHHHHH
Confidence 8999888999999999999999999999999999999999999999888766533 23456889999999999999999
Q ss_pred HHhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCCCC------------------------------------
Q psy9001 453 LHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRPDM------------------------------------ 494 (1351)
Q Consensus 453 v~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~d~------------------------------------ 494 (1351)
+++.+|++++|||+++.+|.++.|...||+|||++|+ ||+|+
T Consensus 449 v~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf~~~y~~~e~fvlp~SH 528 (730)
T PRK12568 449 IASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTFGLVYAFSERFVLPLSH 528 (730)
T ss_pred HHHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhhhhhhhhhccEeccCCC
Confidence 9999999999999999999999999999999999999 99876
Q ss_pred -----CCCc--------------------------------------------------------------HHHHHHHHH
Q psy9001 495 -----SDMT--------------------------------------------------------------VGTFDAAMN 507 (1351)
Q Consensus 495 -----~~~s--------------------------------------------------------------l~~f~k~L~ 507 (1351)
+|++ +++|+|+||
T Consensus 529 DEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~~~ldW~ll~~~~h~~~~~~~~dLn 608 (730)
T PRK12568 529 DEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHDQSLDWHLLDGARHRGMQQLVGDLN 608 (730)
T ss_pred cccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCCCCccccccCChhHHHHHHHHHHHH
Confidence 1111 378999999
Q ss_pred HhhhcccccccC------CcceEeecCCCcEEEEEeC-------ceEEEEeCCCCCcccccccccccCcccccccccccc
Q psy9001 508 TTEERFKWLSAD------PGYVSTKHEGDKVIIFERA-------GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGS 574 (1351)
Q Consensus 508 ~Lr~~~~~L~~g------~~~~~~~~~~~~Vlaf~R~-------~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1351)
+||+++|+|... ..|+...+.+++|++|.|. .||||+||+|. .+.+|+
T Consensus 609 ~ly~~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~~-~~~~Y~------------------ 669 (730)
T PRK12568 609 AALRRTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTPQ-PHHDYR------------------ 669 (730)
T ss_pred HHHHhChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCCC-CccCeE------------------
Confidence 999999999543 3455666778889999996 29999999998 788888
Q ss_pred cccceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEEC
Q psy9001 575 ISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTTS 641 (1351)
Q Consensus 575 ~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~~ 641 (1351)
||||.+|+|++|||||+..|||++.+|.+ .+.+++.++||+++||+|+||||+++||++.
T Consensus 670 ------ig~p~~G~~~eilNsd~~~ygG~~~~n~~-~~~~~~~~~~g~~~s~~i~lppl~~~~~~~~ 729 (730)
T PRK12568 670 ------VGVPRAGGWREILNTDSAHYGGSNLGNSG-RLATEPTGMHGHAQSLRLTLPPLATIYLQAE 729 (730)
T ss_pred ------ECCCCCCeEEEEEcCchhhhCCCCcCCCC-ceeecccccCCCccEEEEEeCCCEEEEEEEC
Confidence 99999999999999999999999998876 4789999999999999999999999999985
|
|
| >PRK14705 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-80 Score=799.43 Aligned_cols=459 Identities=27% Similarity=0.501 Sum_probs=400.9
Q ss_pred CceeEEE-----EEEEEEEeecCCCCccccceeec-CCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcc
Q psy9001 67 KAGLLCF-----MHVVCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140 (1351)
Q Consensus 67 ~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~-~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA 140 (1351)
..||+|+ |++|+|+||||+|++..++|++. .+|+|+++||++.+| ..|||+|++.+|++..+.||||
T Consensus 637 ~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G-------~~Yky~i~~~~g~~~~k~DPyA 709 (1224)
T PRK14705 637 VDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAG-------ACYKFEILTKAGQWVEKADPLA 709 (1224)
T ss_pred CCeEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCC-------CEEEEEEEcCCCcEEecCCccc
Confidence 5699999 99999999999999999999984 579999999998776 5999999998899899999999
Q ss_pred eEEecCCC-Cccceee-eeeCCCCCCCCccCCCCC---CCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCC
Q psy9001 141 TYVTEPPV-VGHAYEQ-RIWNPKPQDKHKWTSSKP---KKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMA 215 (1351)
Q Consensus 141 ~~~~~~~~-~~~~~~~-~~~~p~~~~~~~w~~~~p---~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt 215 (1351)
+.++.++. +|+|++. ..|+++ .|...+. +..++++|||+|+|+|+. .++|+++++++|||||+||||
T Consensus 710 ~~~e~~p~~aS~V~d~~~~w~d~-----~W~~~r~~~~~~~~p~~IYEvHvgsf~~---~~~~~~l~~~lldYlk~LGvt 781 (1224)
T PRK14705 710 FGTEVPPLTASRVVEASYAFKDA-----EWMSARAERDPHNSPMSVYEVHLGSWRL---GLGYRELAKELVDYVKWLGFT 781 (1224)
T ss_pred cccccCCCCCeEEeCCCCCcCCh-----hhhhccccCCCCcCCcEEEEEEeccccc---CCchHHHHHHHHHHHHHhCCC
Confidence 99999885 5666652 234333 4554443 235789999999999987 389999999988999999999
Q ss_pred cCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccc
Q psy9001 216 IPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACE 295 (1351)
Q Consensus 216 ~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~ 295 (1351)
| ||||| ++|+ |..+| |||++++|| +|+
T Consensus 782 ~----IeLmP--------------------v~e~--p~~~s-----wGY~~~~y~---------------------ap~- 808 (1224)
T PRK14705 782 H----VEFMP--------------------VAEH--PFGGS-----WGYQVTSYF---------------------APT- 808 (1224)
T ss_pred E----EEECc--------------------cccC--CCCCC-----CCCCccccC---------------------CcC-
Confidence 9 99999 5555 65555 999999999 888
Q ss_pred cCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCC-CCCCCC
Q psy9001 296 KFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP-RGTHPL 374 (1351)
Q Consensus 296 ~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~-~~~~~~ 374 (1351)
++||+++|||+||++||++||+||||||+||++.+ .+++..|+|. +.|++.++ .+.+++
T Consensus 809 ------------------~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d-~~~l~~fdg~-~~y~~~d~~~g~~~~ 868 (1224)
T PRK14705 809 ------------------SRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKD-SWALAQFDGQ-PLYEHADPALGEHPD 868 (1224)
T ss_pred ------------------cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcc-hhhhhhcCCC-cccccCCcccCCCCC
Confidence 99999999999999999999999999999999987 5778889986 34554444 477899
Q ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHH
Q psy9001 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLH 454 (1351)
Q Consensus 375 w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~ 454 (1351)
|++..||+++++||+||+++++||++||||||||||++.+|+|.|+++..+.+ ..+.+|+++|.+++.||+++|+.|+
T Consensus 869 Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w--~pn~~gg~en~~ai~fl~~ln~~v~ 946 (1224)
T PRK14705 869 WGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQW--RPNRFGGRENLEAISFLQEVNATVY 946 (1224)
T ss_pred CCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccc--cccccCCccChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877654 3577899999999999999999999
Q ss_pred hhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCCCC--------------------------------------
Q psy9001 455 DKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRPDM-------------------------------------- 494 (1351)
Q Consensus 455 ~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~d~-------------------------------------- 494 (1351)
+.+|++++|||+++.+|.+++|++.||+||||+|| ||+|+
T Consensus 947 ~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~~~ya~~e~fvl~~SHDe 1026 (1224)
T PRK14705 947 KTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITFSLVYAFTENFLLPISHDE 1026 (1224)
T ss_pred HHCCCeEEEEEcCCCCcCccccccCCCccCCcEecchhhHHHHHHhhhCcchhhcccchHHHHHHHHhhcCEeccccccc
Confidence 99999999999999999999999999999999999 99854
Q ss_pred ---CCC--------------------------------------------------------------cHHHHHHHHHHh
Q psy9001 495 ---SDM--------------------------------------------------------------TVGTFDAAMNTT 509 (1351)
Q Consensus 495 ---~~~--------------------------------------------------------------sl~~f~k~L~~L 509 (1351)
++. .++.|+|+||+|
T Consensus 1027 vvhgk~sl~~km~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~~~~LdW~ll~~~~h~~~~~~~rdLn~l 1106 (1224)
T PRK14705 1027 VVHGKGSMLRKMPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSEQHGLDWFLADIPAHRGIQLLTKDLNEL 1106 (1224)
T ss_pred ccccchhHHHhCCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccccccCCCcccCChhhHHHHHHHHHHHHH
Confidence 111 127799999999
Q ss_pred hhcccccccCC------cceEeecCCCcEEEEEeC-----ceEEEEeCCCCCcccccccccccCcccccccccccccccc
Q psy9001 510 EERFKWLSADP------GYVSTKHEGDKVIIFERA-----GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKL 578 (1351)
Q Consensus 510 r~~~~~L~~g~------~~~~~~~~~~~Vlaf~R~-----~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (1351)
|+++|+|...+ .|+...+.+++|++|.|. .||||+||+|. .+.+|+
T Consensus 1107 y~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp~-~~~~y~---------------------- 1163 (1224)
T PRK14705 1107 YTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSGG-PHKGYT---------------------- 1163 (1224)
T ss_pred HhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCCC-CccCce----------------------
Confidence 99999996432 234445667889999996 49999999997 888888
Q ss_pred eEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEEC
Q psy9001 579 HRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTTS 641 (1351)
Q Consensus 579 ~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~~ 641 (1351)
||||.+|.|++|||||+..|||++..|.+ .+++++.+|||+++||+|+||||+++||++.
T Consensus 1164 --igvp~~G~y~eilnsd~~~ygGsg~~n~~-~~~~~~~~~~g~~~s~~i~lPpl~~~~~~~~ 1223 (1224)
T PRK14705 1164 --LGVPAAGAWTEVLNTDHETYGGSGVLNPG-SLKATTEGQDGQPATLTVTLPPLGASFFAPA 1223 (1224)
T ss_pred --ECCCCCCeEEEEEeCchhhcCCCCcCCCC-ceeecccccCCCCceEEEEecCCEEEEEEEC
Confidence 99999999999999999999999999876 4788999999999999999999999999975
|
|
| >PRK14706 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-79 Score=759.14 Aligned_cols=484 Identities=28% Similarity=0.485 Sum_probs=403.5
Q ss_pred ChhhhhHhhhccc--ccCCCCCccccccccccccCceeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCC
Q psy9001 35 TPEQLKYLVDECH--KAGLFGTPEQLKYLVDECHKAGLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPP 107 (1351)
Q Consensus 35 ~~~~~~~~~~~~~--~~~~f~~~~~l~~l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~ 107 (1351)
+++++.++++-.+ ..+.++.-. .......||+|+ |++|+|+||||+|++..+||++.++|+|+++||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~lGah~-----~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg 82 (639)
T PRK14706 8 DHGHLQKLVTADLVRPDHLLGAHP-----ATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPG 82 (639)
T ss_pred CHHHHHHHHcCcccchhHhcCccC-----ccCCCcccEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECC
Confidence 4566666666555 222233210 000112489999 9999999999999988899999888999999998
Q ss_pred CCCCCcccCcccEEEEEEEecCCceeeccCCcceEEecCCCCccceeeeeeCCCCCCCCccCCCC------CCCCCCceE
Q psy9001 108 NPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK------PKKPDNLKI 181 (1351)
Q Consensus 108 ~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~------p~~~~~~vI 181 (1351)
+..| +.|+|+|++.+|....++||||++++.++.. .++++++ .|+|.+.. ++..++++|
T Consensus 83 ~~~g-------~~Yky~I~~~~g~~~~~~DPYa~~~~~~~~~----~svv~~~----~~~w~d~~w~~~~~~~~~~~~~I 147 (639)
T PRK14706 83 ARPG-------QRYKFRVTGAAGQTVDKMDPYGSFFEVRPNT----ASIIWED----RFEWTDTRWMSSRTAGFDQPISI 147 (639)
T ss_pred CCCC-------CEEEEEEECCCCCEEeccCcceEEEecCCCC----ceEECCC----CCCCCCcccccccCCccCCCcEE
Confidence 7655 6999999988888889999999999988763 2223333 26676543 223467999
Q ss_pred EEEecCCccCC--CCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCc
Q psy9001 182 YESHVGICTQE--QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 259 (1351)
Q Consensus 182 YE~hvr~ft~~--~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~ 259 (1351)
||+|||+|+.. +..|+|+++++++++|||+||||| ||||| +.|+ |..++
T Consensus 148 YE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~----velmP--------------------v~e~--~~~~~--- 198 (639)
T PRK14706 148 YEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTH----VELLG--------------------VMEH--PFDGS--- 198 (639)
T ss_pred EEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCE----EEccc--------------------hhcC--CCCCC---
Confidence 99999999753 457899999999779999999999 99999 5565 55555
Q ss_pred cccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q psy9001 260 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLD 339 (1351)
Q Consensus 260 ~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILD 339 (1351)
|||++++|| +|+ ++||+++|||+||++||++||+||||
T Consensus 199 --wGY~~~~~~---------------------~~~-------------------~~~g~~~~~~~lv~~~H~~gi~VilD 236 (639)
T PRK14706 199 --WGYQVTGYY---------------------APT-------------------SRLGTPEDFKYLVNHLHGLGIGVILD 236 (639)
T ss_pred --CCcCccccc---------------------ccc-------------------cccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 999999999 888 99999999999999999999999999
Q ss_pred eeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccccccc
Q psy9001 340 VVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHN 419 (1351)
Q Consensus 340 vV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~ 419 (1351)
||+||++.+ ..++..|+|..-++|.....+.+.+|++..||+++|+||+||+++++||++||||||||||++.+|+|.+
T Consensus 237 ~v~nH~~~~-~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d 315 (639)
T PRK14706 237 WVPGHFPTD-ESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLD 315 (639)
T ss_pred ecccccCcc-hhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecc
Confidence 999999987 4567778886433344444567789999889999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCCCC---
Q psy9001 420 HGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRPDM--- 494 (1351)
Q Consensus 420 ~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~d~--- 494 (1351)
++++. | ..+++|+++|.+++.||+++|+.+++.+|++++|||+++.+|.++.|++. |+|||++|+ ||++.
T Consensus 316 ~~~~~-~---~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~-G~gFD~~w~~~w~~~~l~~ 390 (639)
T PRK14706 316 FSRTE-W---VPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYKWAMGWMNDTLAY 390 (639)
T ss_pred cCccc-c---cccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCC-CCccccEeccHHHHHHHHH
Confidence 87643 2 56788999999999999999999999999999999999999999999975 999999999 77643
Q ss_pred --------------------------------------CCC---------------------------------------
Q psy9001 495 --------------------------------------SDM--------------------------------------- 497 (1351)
Q Consensus 495 --------------------------------------~~~--------------------------------------- 497 (1351)
+++
T Consensus 391 ~~~~~~~r~~~~~~lt~~~~y~~~e~~il~~SHDev~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~Ef 470 (639)
T PRK14706 391 FEQDPLWRKYHHHKLTFFNVYRTSENYVLAISHDEVVHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEF 470 (639)
T ss_pred hccCchhhhhchhccchhhhhhccccEecCCCCccccCCccchHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEecccc
Confidence 011
Q ss_pred -----------------------cHHHHHHHHHHhhhcccccccCC------cceEeecCCCcEEEEEeC------ceEE
Q psy9001 498 -----------------------TVGTFDAAMNTTEERFKWLSADP------GYVSTKHEGDKVIIFERA------GLLF 542 (1351)
Q Consensus 498 -----------------------sl~~f~k~L~~Lr~~~~~L~~g~------~~~~~~~~~~~Vlaf~R~------~ll~ 542 (1351)
.|.+|+|+||+||+++++|..++ .++...+.+++|+||.|. .|||
T Consensus 471 G~~~ew~~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlv 550 (639)
T PRK14706 471 AQGTEWNHDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDWHRGDKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLA 550 (639)
T ss_pred CCCCCCCcccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHHhhCCCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEE
Confidence 13679999999999999997553 234455667889999997 2999
Q ss_pred EEeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCc
Q psy9001 543 AFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR 622 (1351)
Q Consensus 543 v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~ 622 (1351)
|+||+|. .+.+|+ ||||.+|+|++|||||+..|||+++.|. .+.+.+.+|+|+
T Consensus 551 V~Nfs~~-~~~~y~------------------------ig~p~~g~~~~i~nsd~~~~gG~g~~n~--~~~~~~~~~~g~ 603 (639)
T PRK14706 551 VANLTPV-YREQYR------------------------IGVPQGGEYRVLLSTDDGEYGGFGTQQP--DLMASQEGWHGQ 603 (639)
T ss_pred EEeCCCC-CcCCeE------------------------ECCCCCCeEEEEEcCCccccCCCCCCCC--ceeccccccCCC
Confidence 9999996 788888 9999999999999999999999998885 368888899999
Q ss_pred ccEEEEEeCCcEEEEEEECC
Q psy9001 623 RNSIKLYLPTRTGLILTTSP 642 (1351)
Q Consensus 623 ~~si~l~LPpls~~vl~~~~ 642 (1351)
++||+|+|||++++||++++
T Consensus 604 ~~si~i~lp~~~~~~~~~~~ 623 (639)
T PRK14706 604 PHSLSLNLPPSSVLILEFVG 623 (639)
T ss_pred ccEEEEEeCCcEEEEEEECC
Confidence 99999999999999999874
|
|
| >PLN02960 alpha-amylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-77 Score=731.66 Aligned_cols=432 Identities=40% Similarity=0.743 Sum_probs=371.0
Q ss_pred cccCcccEEEEEEEecCCceeeccCCcceEEecCCCCccceeeeeeCCCCCCCCccCCCCCCCCCCceEEEEecCCccCC
Q psy9001 113 CKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQE 192 (1351)
Q Consensus 113 ~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~p~~~~~~vIYE~hvr~ft~~ 192 (1351)
+.+.||++|+|+|++.+|. ..++||||++++..+. +.....++|+|.....|+|++.+|+.+.+++|||+|||+|+.+
T Consensus 332 p~~~hG~~Yky~v~~~~g~-~~~vdpyA~~~qp~~~-~~~~~~v~~d~~~~~~y~W~~~~p~~~~~~vIYElHvg~~~~e 409 (897)
T PLN02960 332 PAIPHGSKYRVYFNTPDGP-LERVPAWATYVLPDPD-GKQWYAIHWEPPPEEAYKWKFERPKVPKSLRIYECHVGISGSE 409 (897)
T ss_pred cCCCCCCEEEEEEEeCCCc-eEECCCcceeEeecCC-CccceEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecccccCC
Confidence 3467889999999987765 6789999999976553 2222345667643347999988877778999999999999988
Q ss_pred CCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCccccccccc
Q psy9001 193 QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLM 272 (1351)
Q Consensus 193 ~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~ 272 (1351)
+..|||+++++++|||||+||||| |||||| .|+ +...+ |||++++||
T Consensus 410 ~~~gtf~~~~e~~LdYLk~LGvt~----IeLmPv--------------------~e~--~~~~s-----wGY~~~~yf-- 456 (897)
T PLN02960 410 PKISSFKEFTQKVLPHVKKAGYNA----IQLIGV--------------------QEH--KDYSS-----VGYKVTNFF-- 456 (897)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCE----EEECCc--------------------ccC--CCCCC-----CCCCcccCC--
Confidence 889999999998899999999999 999994 444 44445 999999999
Q ss_pred chhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCC
Q psy9001 273 DKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG 352 (1351)
Q Consensus 273 ~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~ 352 (1351)
+|+ ++||+++|||+||++||++||+||||||+||++.++..+
T Consensus 457 -------------------a~~-------------------~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~ 498 (897)
T PLN02960 457 -------------------AVS-------------------SRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVG 498 (897)
T ss_pred -------------------Ccc-------------------cccCCHHHHHHHHHHHHHCCCEEEEEecccccCCccccc
Confidence 888 899999999999999999999999999999999986677
Q ss_pred cccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccc
Q psy9001 353 LNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 432 (1351)
Q Consensus 353 ~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~ 432 (1351)
+..|+|....||+.+..+.+..|++..||+++++||+||+++++||++||||||||||++++|+|.++|. ..+.+.+..
T Consensus 499 L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~-~~~~G~~~~ 577 (897)
T PLN02960 499 LSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGF-ASFTGDLDE 577 (897)
T ss_pred hhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCc-cccCCcccc
Confidence 8889998667888777777889999999999999999999999999999999999999999999988764 223332233
Q ss_pred cCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCCCC----------------
Q psy9001 433 YFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRPDM---------------- 494 (1351)
Q Consensus 433 ~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~d~---------------- 494 (1351)
++...+|.+++.||+++|+.+++..|++++|||+++++|.++.|.+.||+||||+|+ |+++.
T Consensus 578 ~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~r~~~~~~ 657 (897)
T PLN02960 578 YCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPDQEWSMSK 657 (897)
T ss_pred cCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCCCCcccccCCCcHHHHHHHHHhCcCCCCChhc
Confidence 333457899999999999999999999999999999999999999999999999998 64322
Q ss_pred ---------------------------CCC--------------------------------------------------
Q psy9001 495 ---------------------------SDM-------------------------------------------------- 497 (1351)
Q Consensus 495 ---------------------------~~~-------------------------------------------------- 497 (1351)
+++
T Consensus 658 l~~s~~~~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~al~~~~rllt~~~~Pg~pLlFMG~E 737 (897)
T PLN02960 658 IVSTLVKNKENADKMLSYAENHNQSISGGKSFAEILLGKNKESSPAVKELLLRGVSLHKMIRLITFTLGGSAYLNFMGNE 737 (897)
T ss_pred cEeeeccCcCCcceEEEEecCcCccccCcccHHHHCCCchhhhhcccChhhhhhhhHHHHHHHHHHHhCCCCCEeeCccc
Confidence 000
Q ss_pred ----------------------------------cHHHHHHHHHHhhhcccccccCCcceEeecCCCcEEEEEeCceEEE
Q psy9001 498 ----------------------------------TVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFA 543 (1351)
Q Consensus 498 ----------------------------------sl~~f~k~L~~Lr~~~~~L~~g~~~~~~~~~~~~Vlaf~R~~ll~v 543 (1351)
.+++|+|+||+||+++|+|..+..++...+.+++||+|.|..||||
T Consensus 738 FGh~e~~~~PdP~n~~tf~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~~llvV 817 (897)
T PLN02960 738 FGHPERVEFPRASNNFSFSLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRGPLLFA 817 (897)
T ss_pred cCChhhhhCcCCCCccccccccCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeCCeEEE
Confidence 1256999999999999999998888777788889999999999999
Q ss_pred EeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEccCCCCccCcccccCCCCce-eeeecccCCc
Q psy9001 544 FNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVY-ETYPEPWNNR 622 (1351)
Q Consensus 544 ~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~-~~~~~~~~g~ 622 (1351)
+||+|.+++.+|+ ||||.+|+|++|||||+..|||+++.+..... .++..++||+
T Consensus 818 ~NFsp~~~~~~Y~------------------------vgvP~~G~y~eilNSD~~~yGG~g~~~~~~~~~~t~~~~~~g~ 873 (897)
T PLN02960 818 FNFHPTNSYEEYE------------------------VGVEEAGEYELILNTDEVKYGGQGRLTEDQYLQRTKSKRIDGL 873 (897)
T ss_pred EeCCCCCcCcCce------------------------ECCCCCCcEEEEEeCchhhcCCCCccCCCcceeeccccccCCC
Confidence 9999976788888 99999999999999999999999988765433 5778899999
Q ss_pred ccEEEEEeCCcEEEEEEECC
Q psy9001 623 RNSIKLYLPTRTGLILTTSP 642 (1351)
Q Consensus 623 ~~si~l~LPpls~~vl~~~~ 642 (1351)
++||+|+|||++++||++.+
T Consensus 874 ~~si~i~LPp~sa~v~k~~~ 893 (897)
T PLN02960 874 RNCLELTLPSRSAQVYKLAR 893 (897)
T ss_pred CceEEEEeCCCEEEEEEEee
Confidence 99999999999999999864
|
|
| >PLN02447 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-74 Score=713.36 Aligned_cols=492 Identities=39% Similarity=0.675 Sum_probs=399.0
Q ss_pred ccCCceeehhchhhhhccchhhHHHHhhhccccceeecCCcEEEEeecCCccEEEEEec-chhhhHHHhhcccccccccc
Q psy9001 666 LGDNGILLMMNYSSINSSIGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQ 744 (1351)
Q Consensus 666 ~~~~~~~~~~~~~~i~~~~~~~~~f~~~y~~~G~~~~~~~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~ 744 (1351)
|.++.......+.+|+++||||++|+++|++||+|+.++ +|+||||||+|++|+|+|+ |+|+
T Consensus 76 ~~~r~~~~~~~~~~i~~~~~~l~~f~~~y~~lGa~~~~~-g~~FrvWAP~A~~V~LvGdFN~W~---------------- 138 (758)
T PLN02447 76 LRYRYSRYRRRREEIEKNEGGLEAFSRGYEKFGFNRSEG-GITYREWAPGAKAAALIGDFNNWN---------------- 138 (758)
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhceeEEecC-CEEEEEECCCCCEEEEEEecCCCC----------------
Confidence 445667778889999999999999999999999999885 5999999999999999995 6641
Q ss_pred ccccccCCccccCCCCCCCCCCcccccccccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCcccccc
Q psy9001 745 VTSFFAASSRTMGNSQSVDPASIHIPELHKLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLER 823 (1351)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1351)
...++|++ ++|+| +++||+ .+|.+.
T Consensus 139 ---------------------------------------~~~~~M~~~~~GvW--------------e~~ip~-~~g~~~ 164 (758)
T PLN02447 139 ---------------------------------------PNAHWMTKNEFGVW--------------EIFLPD-ADGSPA 164 (758)
T ss_pred ---------------------------------------CCccCceeCCCCEE--------------EEEECC-cccccc
Confidence 12356865 59999 999998 888888
Q ss_pred CCCCCCeEEEEEecCCceeeEEEecCcceEEEecCCC-CCeeeeeeeeCCCCCCCCccccCCCCCCCCceEEEeecCCcc
Q psy9001 824 DPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPV-VGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICT 902 (1351)
Q Consensus 824 ~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~~~~-~~~~~d~~~~~p~~~~~~~w~~~~p~~p~d~iIYE~HV~~~s 902 (1351)
++||++|+|+|+..+| ++.+++||||+++++++. .+++++..+|+|+.+++|.|++++|++|.+++|||+|||.++
T Consensus 165 ~~~G~~Yky~i~~~~g---~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~~~~y~w~~~~~~~~~~~~IYE~Hvg~~~ 241 (758)
T PLN02447 165 IPHGSRVKIRMETPDG---RWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRPPRPAALRIYEAHVGMSS 241 (758)
T ss_pred CCCCCEEEEEEEeCCC---cEEeecCchHheeeccCCccCCCCceEEeCCCCCCCCCCCCCCCCCCCCCEEEEEeCCccc
Confidence 9999999999999888 789999999999998753 356789999999876789999998878889999999999999
Q ss_pred cCCCcccccccccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCC
Q psy9001 903 QEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPN 982 (1351)
Q Consensus 903 ~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~ 982 (1351)
.++++|||++|++..||+||+|| ||. ++||
T Consensus 242 ~~~~~gty~~~~~~~L~ylk~LG-~t~---------------I~Lm---------------------------------- 271 (758)
T PLN02447 242 EEPKVNSYREFADDVLPRIKALG-YNA---------------VQLM---------------------------------- 271 (758)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcC-CCE---------------EEEC----------------------------------
Confidence 88899999999999999999999 442 2333
Q ss_pred CCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCC
Q psy9001 983 PDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 1061 (1351)
Q Consensus 983 ~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~ 1061 (1351)
+..++.+ ..+||| +++||+++|+|||++|||+||++||++||+||||||+||++.+
T Consensus 272 ----------------Pi~e~~~-------~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~ 328 (758)
T PLN02447 272 ----------------AIQEHAY-------YGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKN 328 (758)
T ss_pred ----------------CccccCC-------CCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccccccc
Confidence 1111111 135888 8999999999999999999999999999999999999999998
Q ss_pred ccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCC
Q psy9001 1062 VLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSG 1141 (1351)
Q Consensus 1062 ~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~ 1141 (1351)
+..++..|+++...||+.++.+.+..|++.+||+++++||+||+++++||++||||||||||+|.+|+|.+||++.+|++
T Consensus 329 ~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~ 408 (758)
T PLN02447 329 TLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTG 408 (758)
T ss_pred ccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCccccccc
Confidence 87788899998888998877788888988899999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCc
Q psy9001 1142 HYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAG 1221 (1351)
Q Consensus 1142 ~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~ 1221 (1351)
.+++|||++.|.+++.||+++|+.|++.+|++++|||+++++|.+|+|..+||+||||+|++.. .+
T Consensus 409 ~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l~~p~~~GGlGFDykw~Mg~--------------~~ 474 (758)
T PLN02447 409 NYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPVQEGGVGFDYRLAMAI--------------PD 474 (758)
T ss_pred CcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCccccCCCCcCCcceEECCcc--------------ch
Confidence 9999999999999999999999999999999999999999999999999999999999999833 33
Q ss_pred hhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccc----c------
Q psy9001 1222 KYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNM----K------ 1291 (1351)
Q Consensus 1222 ~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~----~------ 1291 (1351)
.+...++.+. .+...-. .+.+... .| ....++ |.|..+||+.......+ .
T Consensus 475 ~~l~~l~~~~--d~~~~~~--~l~~sl~-----~r------~~~E~~-----I~y~eSHDevv~Gkksl~~~l~d~~my~ 534 (758)
T PLN02447 475 KWIELLKEKR--DEDWSMG--DIVHTLT-----NR------RYTEKC-----VAYAESHDQALVGDKTIAFWLMDKEMYD 534 (758)
T ss_pred HHHHHHhhCC--CcccCHH--HHHHHHh-----cc------cccCce-----EeccCCcCeeecCcchhHhhhcchhhhh
Confidence 4444553321 1110000 0111111 00 011233 78899999976533332 1
Q ss_pred ccCC-----H------HHHHHHHHHHHccCCc-cEEEee-cccCCCCcc--------ceeeccCCcce
Q psy9001 1292 RYIQ-----T------ESNMNGFGIQTLPTQS-PLYLVA-KIEKPCSTR--------EVVKAPLPFGV 1338 (1351)
Q Consensus 1292 ~~~~-----~------~~~r~A~allltspGi-P~If~g-~~~~~~~~~--------~~~~~p~~~~~ 1338 (1351)
.+.. . ...|+..+++++.||. +|+||| |+.++++.. ..-..++.|+.
T Consensus 535 ~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws~~~~~~~W~L 602 (758)
T PLN02447 535 GMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSYDKCRRRWDL 602 (758)
T ss_pred cCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCcccccccCcccccCCccc
Confidence 1111 0 1134456789999999 799999 888886422 12345788876
|
|
| >PRK05402 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-71 Score=705.58 Aligned_cols=460 Identities=31% Similarity=0.561 Sum_probs=387.9
Q ss_pred CceeEEE-----EEEEEEEeecCCCCccccceeec-CCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcc
Q psy9001 67 KAGLLCF-----MHVVCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140 (1351)
Q Consensus 67 ~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~-~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA 140 (1351)
..||+|+ |++|+|+||||+|++..++|++. ++|+|+++||++..| ..|+|+|+..+|....+.||||
T Consensus 130 ~~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g-------~~Y~y~v~~~~g~~~~~~DPYa 202 (726)
T PRK05402 130 VSGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEG-------ELYKFEILTADGELLLKADPYA 202 (726)
T ss_pred CCcEEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCCC-------CEEEEEEeCCCCcEeecCCCce
Confidence 4799999 99999999999999888999997 789999999987655 5999999987888889999999
Q ss_pred eEEecCCC-CccceeeeeeCCCCCCCCccCCC-----CC---CCCCCceEEEEecCCccC---CCCCCCHHHHHHhhhHH
Q psy9001 141 TYVTEPPV-VGHAYEQRIWNPKPQDKHKWTSS-----KP---KKPDNLKIYESHVGICTQ---EQKCASYEDFVRVVIPR 208 (1351)
Q Consensus 141 ~~~~~~~~-~~~~~~~~~~~p~~~~~~~w~~~-----~p---~~~~~~vIYE~hvr~ft~---~~~~G~~~gi~~~~L~y 208 (1351)
++++.++. .|++ ++++ .|+|+++ |+ +..++++|||+|||+|+. ++..|+|+++++++|||
T Consensus 203 ~~~~~~~~~~s~v-----~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~y 274 (726)
T PRK05402 203 FAAEVRPATASIV-----ADLS---QYQWNDAAWMEKRAKRNPLDAPISIYEVHLGSWRRHEDGGRFLSYRELADQLIPY 274 (726)
T ss_pred EEEecCCCCcEEE-----eCCc---cCCCCCcchhhcccccCcccCCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHH
Confidence 99998875 3444 4443 5667654 22 245789999999999974 45689999999996799
Q ss_pred HHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCch
Q psy9001 209 IVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSL 288 (1351)
Q Consensus 209 Lk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~ 288 (1351)
||+||||+ ||||||| |+ +..++ |||++++||
T Consensus 275 lk~LGv~~----i~L~Pi~--------------------e~--~~~~~-----~GY~~~~y~------------------ 305 (726)
T PRK05402 275 VKEMGFTH----VELLPIA--------------------EH--PFDGS-----WGYQPTGYY------------------ 305 (726)
T ss_pred HHHcCCCE----EEECCcc--------------------cC--CCCCC-----CCCCcccCC------------------
Confidence 99999999 9999954 44 44444 999999999
Q ss_pred hcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccC-
Q psy9001 289 IIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG- 367 (1351)
Q Consensus 289 ~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~- 367 (1351)
+++ ++||+++|||+||++||++||+||||+|+||++.+ ..++..|++. +.|++.+
T Consensus 306 ---ai~-------------------~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~-~~~~~~~~~~-~~y~~~~~ 361 (726)
T PRK05402 306 ---APT-------------------SRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKD-AHGLARFDGT-ALYEHADP 361 (726)
T ss_pred ---CcC-------------------cccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-ccchhccCCC-cceeccCC
Confidence 887 99999999999999999999999999999999886 3456777776 3444433
Q ss_pred CCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHH
Q psy9001 368 PRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLM 447 (1351)
Q Consensus 368 ~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~ 447 (1351)
..+.++.|++..||+++|+||++|+++++||++||||||||||++..|++.+++...+.+ ..+.++++.+.+++.||+
T Consensus 362 ~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~fl~ 439 (726)
T PRK05402 362 REGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEW--IPNIYGGRENLEAIDFLR 439 (726)
T ss_pred cCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccccc--ccccccCcCCHHHHHHHH
Confidence 346678999999999999999999999999999999999999999999988877666543 234567778888999999
Q ss_pred HHHHHHHhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCCCC-------------------------------
Q psy9001 448 VANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRPDM------------------------------- 494 (1351)
Q Consensus 448 ~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~d~------------------------------- 494 (1351)
++++.|++.+|++++|||+++.+|.++.+...+|+|||++|+ |+++.
T Consensus 440 ~~~~~~~~~~p~~~liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 519 (726)
T PRK05402 440 ELNAVVHEEFPGALTIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLLYAYSENFV 519 (726)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCcCccccccCCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHhHhhhcccc
Confidence 999999999999999999999999999999889999999987 54321
Q ss_pred -----------------------------------------------------------------C-------CCcHHHH
Q psy9001 495 -----------------------------------------------------------------S-------DMTVGTF 502 (1351)
Q Consensus 495 -----------------------------------------------------------------~-------~~sl~~f 502 (1351)
+ ...+.+|
T Consensus 520 l~~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~ 599 (726)
T PRK05402 520 LPLSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWNHDASLDWHLLDFPWHRGVQRL 599 (726)
T ss_pred CCCCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCCccCcCCccccCCcchHHHHHH
Confidence 0 0124789
Q ss_pred HHHHHHhhhcccccccCC----cce--EeecCCCcEEEEEeC------ceEEEEeCCCCCcccccccccccCcccccccc
Q psy9001 503 DAAMNTTEERFKWLSADP----GYV--STKHEGDKVIIFERA------GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWT 570 (1351)
Q Consensus 503 ~k~L~~Lr~~~~~L~~g~----~~~--~~~~~~~~Vlaf~R~------~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~ 570 (1351)
+|+||+||+++|+|+.+. .+. ...+.+++|++|.|. .+|||+||++. .+.+|+
T Consensus 600 ~k~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~-~~~~y~-------------- 664 (726)
T PRK05402 600 VRDLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVVCNFTPV-PRHDYR-------------- 664 (726)
T ss_pred HHHHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEEEeCCCC-cccceE--------------
Confidence 999999999999998652 222 233446789999996 39999999987 666777
Q ss_pred cccccccceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEECC
Q psy9001 571 WRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTTSP 642 (1351)
Q Consensus 571 ~~~~~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~~~ 642 (1351)
|++|.+|+|+++||||+..|||++.++.. .+.+++.+|+|++++|.|+|||++++||+++.
T Consensus 665 ----------i~~p~~g~~~~ilnsd~~~~gg~~~~~~~-~~~~~~~~~~g~~~~~~i~lp~~~~~v~~~~~ 725 (726)
T PRK05402 665 ----------LGVPQAGRWREVLNTDAEHYGGSNVGNGG-GVHAEEVPWHGRPHSLSLTLPPLATLILKPEA 725 (726)
T ss_pred ----------ECCCCCCeEEEEEcCcchhhCCCCCCCCC-ceeccccccCCCCCEEEEEeCCCEEEEEEEcC
Confidence 99999999999999999999999988765 57888889999999999999999999999853
|
|
| >COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-73 Score=683.65 Aligned_cols=458 Identities=29% Similarity=0.486 Sum_probs=392.8
Q ss_pred CceeEEE-----EEEEEEEeecCCCCccccceee-cCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcc
Q psy9001 67 KAGLLCF-----MHVVCAAGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140 (1351)
Q Consensus 67 ~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k-~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA 140 (1351)
.+||+|+ |++|+|+||||+|+...++|+. .++|+|+++||++.+| ++|||+|.+.+|....++||||
T Consensus 35 ~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G-------~~Yky~l~~~~g~~~~~~DP~a 107 (628)
T COG0296 35 VSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPG-------TRYKYELIDPSGQLRLKADPYA 107 (628)
T ss_pred CCceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCC-------CeEEEEEeCCCCceeeccCchh
Confidence 4689999 9999999999999998899885 4789999999998776 5999999999998889999999
Q ss_pred eEEecCCC-CccceeeeeeCCCCCCCCccCCC----C--CCCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcC
Q psy9001 141 TYVTEPPV-VGHAYEQRIWNPKPQDKHKWTSS----K--PKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQG 213 (1351)
Q Consensus 141 ~~~~~~~~-~~~~~~~~~~~p~~~~~~~w~~~----~--p~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LG 213 (1351)
++.+..+. +|+|.+ +. .|.|++. + .+..++++|||+||++|+++ ..-++.++++++|||||+||
T Consensus 108 ~~~~~~p~~aS~v~~-----~~---~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~-~~~~~~e~a~~llpYl~elG 178 (628)
T COG0296 108 RRQEVGPHTASQVVD-----LP---DYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD-RFLGYFELAIELLPYLKELG 178 (628)
T ss_pred hccCCCCCCcceecC-----CC---CcccccccccccccCCCCCCceEEEEEeeeccCC-CCcCHHHHHHHHhHHHHHhC
Confidence 99998886 455553 32 3566633 2 23568999999999999985 44344444555599999999
Q ss_pred CCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccc
Q psy9001 214 MAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRA 293 (1351)
Q Consensus 214 vt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~ 293 (1351)
||| ||||| ++|+ |+.+| ||||++.|| ||
T Consensus 179 ~T~----IELMP--------------------v~e~--p~~~s-----WGYq~~g~y---------------------Ap 206 (628)
T COG0296 179 ITH----IELMP--------------------VAEH--PGDRS-----WGYQGTGYY---------------------AP 206 (628)
T ss_pred CCE----EEEcc--------------------cccC--CCCCC-----CCCCcceec---------------------cc
Confidence 999 99999 8999 99999 999999999 89
Q ss_pred cccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCC
Q psy9001 294 CEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP 373 (1351)
Q Consensus 294 ~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~ 373 (1351)
+ ++||++++||+||++||++||.||||||+||++.+ .+++..|+|...+.+.+...+.++
T Consensus 207 ~-------------------sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d-~~~L~~fdg~~~~e~~~~~~~~~~ 266 (628)
T COG0296 207 T-------------------SRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPD-GNYLARFDGTFLYEHEDPRRGEHT 266 (628)
T ss_pred c-------------------ccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCC-cchhhhcCCccccccCCcccccCC
Confidence 8 89999999999999999999999999999999997 678899999865555555578899
Q ss_pred CCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHH
Q psy9001 374 LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFL 453 (1351)
Q Consensus 374 ~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v 453 (1351)
.|++..+|+++++||+||+++++||+++|||||+|+|+|.+|++.++.+..+-+ ..+..+++.+.++++|++++|+.|
T Consensus 267 ~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~--~~n~~ggr~n~~a~efl~~~n~~i 344 (628)
T COG0296 267 DWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEW--VPNEYGGRENLEAAEFLRNLNSLI 344 (628)
T ss_pred CcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcc--cccccCCcccHHHHHHhhhhhhhh
Confidence 999999999999999999999999999999999999999999998866544321 244568889999999999999999
Q ss_pred HhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCCCC-------------------------------------
Q psy9001 454 HDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRPDM------------------------------------- 494 (1351)
Q Consensus 454 ~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~d~------------------------------------- 494 (1351)
+...|++++|||+|+.+|.++.++..||+||+|+|+ ||+|+
T Consensus 345 ~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nmg~m~D~~~y~~~~~~~r~~~h~~~tf~~~y~~se~~~l~~sHD 424 (628)
T COG0296 345 HEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNMGWMHDTLFYFGKDPVYRKYHHGELTFGLLYAFSENVVLPLSHD 424 (628)
T ss_pred cccCCCceeeeeeccCCCCceeeecccccchhhhhhhhhHhhHHHhcccCccccccccCCCccccccccceeEecccccc
Confidence 999999999999999999999999999999999999 89887
Q ss_pred ----CCC------------------------------------------------------------------cHHHHHH
Q psy9001 495 ----SDM------------------------------------------------------------------TVGTFDA 504 (1351)
Q Consensus 495 ----~~~------------------------------------------------------------------sl~~f~k 504 (1351)
+++ .+.+|.+
T Consensus 425 evvhGk~sl~~rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~~~~~w~~L~~~~~~g~~~~~~~~~~ 504 (628)
T COG0296 425 EVVHGKRSLGERMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFFSSLDWLLLDQAVREGRHKEFRRLVR 504 (628)
T ss_pred ceeecccchhccCCcchhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCcccCCCChhhhhhccccchHHHHHHHHH
Confidence 111 1266777
Q ss_pred HHHHhhhccccccc------CCcceEeecCCCcEEEEEeC-------ceEEEEeCCCCCcccccccccccCccccccccc
Q psy9001 505 AMNTTEERFKWLSA------DPGYVSTKHEGDKVIIFERA-------GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTW 571 (1351)
Q Consensus 505 ~L~~Lr~~~~~L~~------g~~~~~~~~~~~~Vlaf~R~-------~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (1351)
.|+++.+..+.|.. +..|+...+..++|++|.|. .+++|+||++. .+.+|+
T Consensus 505 ~ln~~y~~~~~l~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~~~~-~~~~y~--------------- 568 (628)
T COG0296 505 DLNALYRIPDPLHEQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNFTPV-PRVDYR--------------- 568 (628)
T ss_pred hhHHhhccCCccchhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCCCCC-cccccc---------------
Confidence 78877777666643 33455555555689999994 48899999998 788888
Q ss_pred ccccccceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEE
Q psy9001 572 RGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILT 639 (1351)
Q Consensus 572 ~~~~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~ 639 (1351)
+|+|.+|.|+++||||+..|||++..+....+.++...++++.++++++|||+++++|+
T Consensus 569 ---------~~~~~~g~~~~~lntd~~~~ggs~~~~~~~~~~~~~~~~~~~~~~~~~~lpp~~~~~l~ 627 (628)
T COG0296 569 ---------VGVPVAGRWREVLNTDLAEYGGSGAGNLGLPVSGEDILWHGREWSLSLTLPPLAALVLK 627 (628)
T ss_pred ---------cCCcccccEEEeccchHHHhcCCccccccceecceeeeccCcceeeEEecCCceeeEee
Confidence 99999999999999999999999998887548999999999999999999999999986
|
|
| >TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-72 Score=695.71 Aligned_cols=456 Identities=30% Similarity=0.529 Sum_probs=380.6
Q ss_pred ceeEEE-----EEEEEEEeecCCCCccccceeecC-CCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcce
Q psy9001 68 AGLLCF-----MHVVCAAGDFNNWNREEFAYKKLD-FGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWAT 141 (1351)
Q Consensus 68 ~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~-~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~ 141 (1351)
.||+|+ |++|+|+||||+|+...++|++.. .|+|+++||+...| ..|+|+|+..+|....+.||||+
T Consensus 28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g-------~~Y~y~v~~~~g~~~~~~DPYA~ 100 (613)
T TIGR01515 28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEG-------ELYKYEIVTNNGEIRLKADPYAF 100 (613)
T ss_pred CcEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCC-------CEEEEEEECCCCcEEEeCCCCEe
Confidence 689999 999999999999998889998864 89999999987655 69999999878887889999999
Q ss_pred EEecCCC-Cccceee--eeeCCCCCCCCccCCCCCC---CCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCC
Q psy9001 142 YVTEPPV-VGHAYEQ--RIWNPKPQDKHKWTSSKPK---KPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMA 215 (1351)
Q Consensus 142 ~~~~~~~-~~~~~~~--~~~~p~~~~~~~w~~~~p~---~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt 215 (1351)
.++.++. .|++++. ..|+|. .|+..+++ ..++++|||+|||+|+++ |+|+++++++|||||+||||
T Consensus 101 ~~~~~~~~~s~v~d~~~~~w~~~-----~w~~~~~~~~~~~~~~~iYe~hv~~~~~~---g~~~~i~~~l~dyl~~LGvt 172 (613)
T TIGR01515 101 YAEVRPNTASLVYDLEGYSWQDQ-----KWQEKRKAKTPYEKPVSIYELHLGSWRHG---LSYRELADQLIPYVKELGFT 172 (613)
T ss_pred eeccCCCCcEEEECCccCccCch-----hhhhcccccCcccCCceEEEEehhhccCC---CCHHHHHHHHHHHHHHcCCC
Confidence 9998775 5666642 234443 56655432 345799999999999865 99999999966999999999
Q ss_pred cCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccc
Q psy9001 216 IPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACE 295 (1351)
Q Consensus 216 ~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~ 295 (1351)
+ ||||||| ++ +.. .+|||++++|| +|+
T Consensus 173 ~----i~L~Pi~--------------------e~--~~~-----~~wGY~~~~y~---------------------~~~- 199 (613)
T TIGR01515 173 H----IELLPVA--------------------EH--PFD-----GSWGYQVTGYY---------------------APT- 199 (613)
T ss_pred E----EEECCcc--------------------cC--CCC-----CCCCCCcccCc---------------------ccc-
Confidence 9 9999955 33 332 34999999999 787
Q ss_pred cCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccC-CCCCCCC
Q psy9001 296 KFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG-PRGTHPL 374 (1351)
Q Consensus 296 ~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~-~~~~~~~ 374 (1351)
++||+++|||+||++||++||+||||+|+||++.+. ..+..|++. +.|++.+ ..+.+..
T Consensus 200 ------------------~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~-~~~~~~~~~-~~y~~~~~~~~~~~~ 259 (613)
T TIGR01515 200 ------------------SRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDD-HGLAEFDGT-PLYEHKDPRDGEHWD 259 (613)
T ss_pred ------------------cccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCcc-chhhccCCC-cceeccCCccCcCCC
Confidence 899999999999999999999999999999999863 345566665 3444433 3355678
Q ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHH
Q psy9001 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLH 454 (1351)
Q Consensus 375 w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~ 454 (1351)
|++..||+++|+||++|+++++||++||||||||||++..|++.++++..+.+. .+.++++.+.++..||+++++.|+
T Consensus 260 w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~fl~~~~~~v~ 337 (613)
T TIGR01515 260 WGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWS--PNEDGGRENLEAVDFLRKLNQTVY 337 (613)
T ss_pred CCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhcccccccccc--ccccCCcCChHHHHHHHHHHHHHH
Confidence 998899999999999999999999999999999999999999888877665432 234566778899999999999999
Q ss_pred hhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCC--------------------------------------CC
Q psy9001 455 DKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRP--------------------------------------DM 494 (1351)
Q Consensus 455 ~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~--------------------------------------d~ 494 (1351)
+.+|++++|||+++.+|.++.+...||+|||++|+ |++ |+
T Consensus 338 ~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~sHD~ 417 (613)
T TIGR01515 338 EAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQYHHQLITFSMLYAFSENFVLPLSHDE 417 (613)
T ss_pred HHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhhChhhHhhccccccHHHHHHhhhccccCCCCCC
Confidence 99999999999999999999999999999999987 432 11
Q ss_pred ----------------------------------------------------------C-------CCcHHHHHHHHHHh
Q psy9001 495 ----------------------------------------------------------S-------DMTVGTFDAAMNTT 509 (1351)
Q Consensus 495 ----------------------------------------------------------~-------~~sl~~f~k~L~~L 509 (1351)
+ ...+.+|+|+||+|
T Consensus 418 ~~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~L~~L 497 (613)
T TIGR01515 418 VVHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWNDTEQLDWHLLSFPMHQGVSVFVRDLNRT 497 (613)
T ss_pred cccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCCCCccCCCccccCcccHHHHHHHHHHHHH
Confidence 0 01237899999999
Q ss_pred hhcccccccCCc----c--eEeecCCCcEEEEEeC------ceEEEEeCCCCCcccccccccccCccccccccccccccc
Q psy9001 510 EERFKWLSADPG----Y--VSTKHEGDKVIIFERA------GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISK 577 (1351)
Q Consensus 510 r~~~~~L~~g~~----~--~~~~~~~~~Vlaf~R~------~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (1351)
|+++|+|+.+.. + +...+.+++|++|.|. .|+||+||++. .+.+|+
T Consensus 498 r~~~paL~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~~-~~~~Y~--------------------- 555 (613)
T TIGR01515 498 YQKSKALYEHDFDPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTPV-VRHQYR--------------------- 555 (613)
T ss_pred HhhCHHhhccCCCCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCCC-CccceE---------------------
Confidence 999999975421 2 2233456789999996 49999999997 778888
Q ss_pred ceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEE
Q psy9001 578 LHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILT 639 (1351)
Q Consensus 578 ~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~ 639 (1351)
|++|.+|+|++|||||+..|||+++.+.. ...+...+++|+++||.|+|||++++||+
T Consensus 556 ---i~~p~~g~~~~il~Sd~~~~gG~g~~~~~-~~~~~~~~~~g~~~~i~i~iP~~~~~~~~ 613 (613)
T TIGR01515 556 ---VGVPQPGQYREVLNSDSETYGGSGQGNKG-PLSAEEGALHGRPCSLTMTLPPLATSWLR 613 (613)
T ss_pred ---eCCCCCCeEEEEEeCChhhcCCCCcCCCC-ceeccccccCCCCCEEEEEeCCcEEEEeC
Confidence 99998999999999999999999998875 45777788999999999999999999985
|
A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here. |
| >PRK12313 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-71 Score=694.06 Aligned_cols=460 Identities=29% Similarity=0.540 Sum_probs=380.2
Q ss_pred eeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEE
Q psy9001 69 GLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYV 143 (1351)
Q Consensus 69 gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~ 143 (1351)
||+|+ |++|+|+||||+|++..++|.+..+|+|+++||+...| ..|+|+|...+|....+.||||+.+
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~~g-------~~Y~y~v~~~~g~~~~~~DPya~~~ 111 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAKEG-------QLYKYHISRQDGYQVEKIDPFAFYF 111 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCCCC-------CEEEEEEECCCCeEEecCCCceEEE
Confidence 89999 99999999999999888999988899999999987655 6999999877888889999999999
Q ss_pred ecCCCCccceeeeeeCCCCCCCCccCCCC-----CC---CCCCceEEEEecCCccC--CCCCCCHHHHHHhhhHHHHHcC
Q psy9001 144 TEPPVVGHAYEQRIWNPKPQDKHKWTSSK-----PK---KPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQG 213 (1351)
Q Consensus 144 ~~~~~~~~~~~~~~~~p~~~~~~~w~~~~-----p~---~~~~~vIYE~hvr~ft~--~~~~G~~~gi~~~~L~yLk~LG 213 (1351)
..++.. .+++++|+ .|.|++.. ++ ..++++|||+|||+|+. ++..|+|+++++++|||||+||
T Consensus 112 ~~~~~~----~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LG 184 (633)
T PRK12313 112 EARPGT----ASIVWDLP---EYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMG 184 (633)
T ss_pred ecCCCC----ceEECCCc---ccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcC
Confidence 886642 23344554 56776643 21 33789999999999975 3568999999999779999999
Q ss_pred CCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccc
Q psy9001 214 MAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRA 293 (1351)
Q Consensus 214 vt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~ 293 (1351)
||+ ||||||| ++ |..++ |||++++|| ++
T Consensus 185 v~~----i~L~Pi~--------------------~~--~~~~~-----~GY~~~~y~---------------------~i 212 (633)
T PRK12313 185 YTH----VEFMPLM--------------------EH--PLDGS-----WGYQLTGYF---------------------AP 212 (633)
T ss_pred CCE----EEeCchh--------------------cC--CCCCC-----CCCCCcCcC---------------------cC
Confidence 999 9999955 33 44344 999999999 77
Q ss_pred cccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCC
Q psy9001 294 CEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP 373 (1351)
Q Consensus 294 ~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~ 373 (1351)
+ ++||+++|||+||++||++||+||||+|+||++.++ +++..|++...++|.....+.+.
T Consensus 213 ~-------------------~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 272 (633)
T PRK12313 213 T-------------------SRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDD-DGLAYFDGTPLYEYQDPRRAENP 272 (633)
T ss_pred C-------------------CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc-ccccccCCCcceeecCCCCCcCC
Confidence 7 999999999999999999999999999999999873 45566777532223333345567
Q ss_pred CCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHH
Q psy9001 374 LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFL 453 (1351)
Q Consensus 374 ~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v 453 (1351)
.|++.+||+++|+||++|+++++||++||||||||||++..|++.+++....|. .+..++..+.++++||+++++.|
T Consensus 273 ~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~---~~~~~~~~~~~~~~fl~~~~~~v 349 (633)
T PRK12313 273 DWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWT---PNKYGGRENLEAIYFLQKLNEVV 349 (633)
T ss_pred CCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcC---CcccCCCCCcHHHHHHHHHHHHH
Confidence 899899999999999999999999999999999999999999877665221222 23446667788899999999999
Q ss_pred HhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCC--------------------------------------C
Q psy9001 454 HDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRP--------------------------------------D 493 (1351)
Q Consensus 454 ~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~--------------------------------------d 493 (1351)
++.+|++++|||+++.+|.++.+...||+|||++|+ |++ |
T Consensus 350 ~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~sHD 429 (633)
T PRK12313 350 YLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKYHHNLLTFSFMYAFSENFVLPFSHD 429 (633)
T ss_pred HHHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhCccccccccccchHHHhhhhhcccccCCCCc
Confidence 999999999999999999999999999999999987 442 1
Q ss_pred C----------------------------------------------------------C-------CCcHHHHHHHHHH
Q psy9001 494 M----------------------------------------------------------S-------DMTVGTFDAAMNT 508 (1351)
Q Consensus 494 ~----------------------------------------------------------~-------~~sl~~f~k~L~~ 508 (1351)
. + .+.+.+|+|+||+
T Consensus 430 ~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~r~Li~ 509 (633)
T PRK12313 430 EVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWKHDESLEWHLLEDPMNAGMQRFTSDLNQ 509 (633)
T ss_pred ccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccCCccCCCCccccCChhHHHHHHHHHHHHH
Confidence 1 0 0134789999999
Q ss_pred hhhcccccccCC----cceEe--ecCCCcEEEEEeCc------eEEEEeCCCCCcccccccccccCcccccccccccccc
Q psy9001 509 TEERFKWLSADP----GYVST--KHEGDKVIIFERAG------LLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSIS 576 (1351)
Q Consensus 509 Lr~~~~~L~~g~----~~~~~--~~~~~~Vlaf~R~~------ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (1351)
||+++|+|+.+. .+..+ .+.+++|++|.|.. +|||+||++. .+.+|+
T Consensus 510 LRr~~paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~~-~~~~y~-------------------- 568 (633)
T PRK12313 510 LYKDEPALWELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTPV-EREDYR-------------------- 568 (633)
T ss_pred HHHhChHhhcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCCC-ccccee--------------------
Confidence 999999998542 22222 33456799999974 9999999997 677777
Q ss_pred cceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEECCC
Q psy9001 577 KLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTTSPG 643 (1351)
Q Consensus 577 ~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~~~~ 643 (1351)
|++|.+|+|++|||||+..|||+++.+.. .+.+...+++|++++|.|+|||++++||+..+.
T Consensus 569 ----i~~p~~g~~~~ilnsd~~~ygG~~~~~~~-~~~~~~~~~~g~~~~~~i~ip~~s~~v~~~~~~ 630 (633)
T PRK12313 569 ----IGVPVAGIYEEILNTDSEEFGGSGKGNNG-TVKAQEGPWHGRPQSLTLTLPPLGALVLKPKRR 630 (633)
T ss_pred ----ECCCCCCeEEEEEcCCchhcCCCCcCCCC-ceeecccccCCCCCEEEEEeCCCEEEEEEEccc
Confidence 99999999999999999999999987664 467777889999999999999999999999764
|
|
| >PLN03244 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-70 Score=661.79 Aligned_cols=416 Identities=38% Similarity=0.732 Sum_probs=375.4
Q ss_pred cceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEEecCCCCccceeeeeeCCCCCCCCccCC
Q psy9001 91 FAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTS 170 (1351)
Q Consensus 91 ~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~ 170 (1351)
..|+|...|.|...+| +|+||++||+.+.+++|. +.++++||+++.+.+. +.+++++.|+|+..+.|.|++
T Consensus 322 ~~~~~~~~~w~~~~~~-------~i~H~s~~k~~~~~~~g~-~~RiPaw~~~~~~~~~-~~~~~~~~w~P~~~~~y~~k~ 392 (872)
T PLN03244 322 LESRKGRKAWLKKYIP-------AIPHGSKYRLYFNTPDGP-LERIPAWATYVLPDDD-GKQAFAIHWEPPPEAAHKWKN 392 (872)
T ss_pred HHhhcccCceeecccC-------CCCCCCeEEEEEEcCCCC-cccCCCCeeeEEecCC-CCceeeeEeCCCcccCCccCC
Confidence 3566777899999886 457899999999998888 8999999999999875 448899999998767899999
Q ss_pred CCCCCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccc
Q psy9001 171 SKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 250 (1351)
Q Consensus 171 ~~p~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~ 250 (1351)
.+|+.+..+.|||+|||..+++.+.|||++++++ |
T Consensus 393 ~~p~~p~~lrIYE~HvGms~~e~kv~ty~eF~~~---------v------------------------------------ 427 (872)
T PLN03244 393 MKPKVPESLRIYECHVGISGSEPKISSFEEFTEK---------V------------------------------------ 427 (872)
T ss_pred CCCCCCCCceEEEEEeeecCCCCCcccHHHHhhc---------c------------------------------------
Confidence 9998899999999999999999999999999876 2
Q ss_pred ccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHH
Q psy9001 251 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 330 (1351)
Q Consensus 251 ~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H 330 (1351)
++|| ||+ ++||+++|||+||++||
T Consensus 428 ----------------t~fF---------------------Aps-------------------sRYGTPeDLK~LVD~aH 451 (872)
T PLN03244 428 ----------------TNFF---------------------AAS-------------------SRYGTPDDFKRLVDEAH 451 (872)
T ss_pred ----------------Cccc---------------------ccC-------------------cccCCHHHHHHHHHHHH
Confidence 2456 777 99999999999999999
Q ss_pred HcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccc
Q psy9001 331 KAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410 (1351)
Q Consensus 331 ~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D 410 (1351)
++||+||||||+||++.+...++..|+|....||+.++.+.++.|+++.||+++++|++||+++++||++||||||||||
T Consensus 452 ~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfD 531 (872)
T PLN03244 452 GLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFH 531 (872)
T ss_pred HCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHHHHhCcCcceee
Confidence 99999999999999999877788999998778888877788899999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC-
Q psy9001 411 GVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE- 489 (1351)
Q Consensus 411 ~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~- 489 (1351)
++++|+|.++|+ .+|..++..+++..+|.+++.||+.+|+.+++.+|++++|||+++++|.+|.|++.||+||||+|+
T Consensus 532 aVtSMLY~d~G~-~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnM 610 (872)
T PLN03244 532 SLASMIYTHNGF-ASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNL 610 (872)
T ss_pred cchhheeecccc-ccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecC
Confidence 999999999998 677777777777888999999999999999999999999999999999999999999999999999
Q ss_pred -cCCCC-------------------------------------------CCC----------------------------
Q psy9001 490 -IRPDM-------------------------------------------SDM---------------------------- 497 (1351)
Q Consensus 490 -~~~d~-------------------------------------------~~~---------------------------- 497 (1351)
||++. +++
T Consensus 611 gwmdd~lkylk~~pderw~~~~ItfsL~~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~~~~vv~Rg~aLh 690 (872)
T PLN03244 611 SAPDMWLDFLDNIPDHEWSMSKIVSTLIANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLGGKELLDRGCSLH 690 (872)
T ss_pred cchHHHHHHHHhCCCcccCHHHHhhhhhcccCCcceEEEEecccceeccccchHHhhhcccccccccccchhhhhhhHHH
Confidence 66433 000
Q ss_pred --------------------------------------------------------cHHHHHHHHHHhhhcccccccCCc
Q psy9001 498 --------------------------------------------------------TVGTFDAAMNTTEERFKWLSADPG 521 (1351)
Q Consensus 498 --------------------------------------------------------sl~~f~k~L~~Lr~~~~~L~~g~~ 521 (1351)
.|.+|+|+||+|++++++|..+..
T Consensus 691 KMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr~gN~~s~~~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~ 770 (872)
T PLN03244 691 KMIRLITFTIGGHAYLNFMGNEFGHPERIEFPMPSNNFSFSLANRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLP 770 (872)
T ss_pred HHHHHHHHHccCccceeecccccCCchheeccccCCCccccccccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCc
Confidence 016699999999999999999988
Q ss_pred ceEeecCCCcEEEEEeCceEEEEeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEccCCCCccC
Q psy9001 522 YVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFG 601 (1351)
Q Consensus 522 ~~~~~~~~~~Vlaf~R~~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vlnsD~~~yg 601 (1351)
++...+++++||||.|..|||||||+|++++.+|+ ||||.+|+|++|||||+..||
T Consensus 771 wI~~~d~e~kVIAF~R~~LLfVfNF~P~~sy~dYr------------------------IGVp~~G~Y~eILNSD~~~FG 826 (872)
T PLN03244 771 NIHHVKDAAMVISFMRGPFLFIFNFHPSNSYEGYD------------------------VGVEEAGEYQIILNSDETKYG 826 (872)
T ss_pred EEeeecCCCCEEEEEecCEEEEEeCCCCCCccCCE------------------------ECCCCCCeEEEEEeCChhhhC
Confidence 89989999999999999999999999987899999 999999999999999999999
Q ss_pred cccccCCCCceee--eecccCCcccEEEEEeCCcEEEEEEECC
Q psy9001 602 GFNRLDPGTVYET--YPEPWNNRRNSIKLYLPTRTGLILTTSP 642 (1351)
Q Consensus 602 G~~~~~~~~~~~~--~~~~~~g~~~si~l~LPpls~~vl~~~~ 642 (1351)
|+++++.+. +.+ .+.+++|+++||.|+|||++++||+.++
T Consensus 827 G~g~~~~~~-~~t~~~~~~~~gr~~sl~l~LPprsavVlk~~~ 868 (872)
T PLN03244 827 GQGIIEEDH-YLQRSINKRIDGLRNCLEVFLPSRTAQVYKLSR 868 (872)
T ss_pred CCCccCCCc-eeecccccccCCCCceEEEEeCCCEEEEEEEee
Confidence 999998765 554 5667999999999999999999999864
|
|
| >KOG0470|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-68 Score=638.86 Aligned_cols=495 Identities=45% Similarity=0.752 Sum_probs=429.1
Q ss_pred cccccccCceeEEE-----EEEEEEEeecCCCCcccccee-ecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCcee
Q psy9001 60 YLVDECHKAGLLCF-----MHVVCAAGDFNNWNREEFAYK-KLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLL 133 (1351)
Q Consensus 60 ~l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~-k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~ 133 (1351)
++...+.+..|.|. |++|+++||||+|+.....|. +++.|+|++.+|....|.+.++|++.+++.+.++.|+..
T Consensus 105 ~g~h~~~d~~v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~~~~~~s~~v~H~s~~~~~~~~p~g~~~ 184 (757)
T KOG0470|consen 105 LGTHRTPDGRVDFTEWAPLAEAVSLIGDFNNWNPSSNELKPKDDLGVWEIDLPPKVNGSGAVPHGSVSKIHLSTPYGETC 184 (757)
T ss_pred cceeccCCCceeeeeecccccccccccccCCCCCcccccCcccccceeEEecCcccCCCccccccceeEEEeecCCccee
Confidence 34444444458898 999999999999999888887 788999999999888888899999999999999999999
Q ss_pred eccCCcceEEecCCCCccceeeeeeCCCCCCCCccCCCCCCCCC-CceEEEEecCCccC-CCC---CCCHHHHHHhhhHH
Q psy9001 134 DRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPD-NLKIYESHVGICTQ-EQK---CASYEDFVRVVIPR 208 (1351)
Q Consensus 134 ~~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~p~~~~-~~vIYE~hvr~ft~-~~~---~G~~~gi~~~~L~y 208 (1351)
..+||||+.+...+. ...+.+..|+|.++..+.|...+|+.++ +++|||+|||.||. +.. +|.|+++++|+|||
T Consensus 185 ~~~~~~~~~~~~~~~-~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlph 263 (757)
T KOG0470|consen 185 KRIPAWATYVDQEGE-GPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPH 263 (757)
T ss_pred eccChHhhcccCCCc-ccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccCCCCccccccchhhhhhhhhhH
Confidence 999999999988774 4556677888874344444556666565 99999999999973 222 44499999999999
Q ss_pred HHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCch
Q psy9001 209 IVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSL 288 (1351)
Q Consensus 209 Lk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~ 288 (1351)
||+||+|| |||||||+ ++ +..+.|||++++||
T Consensus 264 lK~LG~Na----iqLmpi~E--------------------f~------~~~~s~GY~~~nFF------------------ 295 (757)
T KOG0470|consen 264 LKKLGYNA----IQLMPIFE--------------------FG------HYYASWGYQVTNFF------------------ 295 (757)
T ss_pred HHHhCccc----eEEeehhh--------------------hh------hhhhccCcceeEee------------------
Confidence 99999999 99999664 31 12234999999999
Q ss_pred hcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCC-CcCcccC
Q psy9001 289 IIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ-ACFFHDG 367 (1351)
Q Consensus 289 ~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~-~~yy~~~ 367 (1351)
||.++|+|++ + .+++.|||.||++||..||.||||||+||++++...++..|+|++ ..||+.+
T Consensus 296 ---apssrYgt~~------------s-~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d~l~~fdGid~~~Yf~~~ 359 (757)
T KOG0470|consen 296 ---APSSRYGTPE------------S-PCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSKDGLNMFDGIDNSVYFHSG 359 (757)
T ss_pred ---cccccccCCC------------c-ccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcCCcchhccCcCCceEEEeC
Confidence 9997887763 2 455789999999999999999999999999998788889999999 6899999
Q ss_pred CCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCc---cCchHHH
Q psy9001 368 PRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN---VDTDALI 444 (1351)
Q Consensus 368 ~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~ 444 (1351)
+++.+..|+++.|||++|+|+++|+++|+||++||+|||||||.|++|+|.+++...+|.+++..+|+.. .+.+++.
T Consensus 360 ~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~f~gd~~~y~g~~g~~~d~~~l~ 439 (757)
T KOG0470|consen 360 PRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAGFDGDYIEYFGTDGSFVDVDALV 439 (757)
T ss_pred CcccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhhccccccccCCcchhhhccCCCcccccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887 8999999
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCc-ccccccCCCCCC--CcCC------cC---CC---C---------------
Q psy9001 445 YLMVANKFLHDKYPEIITIAEDVSGMPAS-CRPVTEGGTGFD--YRLE------IR---PD---M--------------- 494 (1351)
Q Consensus 445 f~~~~~~~v~~~~P~~~~iaE~~~~~p~~-~~~~~~gg~gfd--~~~~------~~---~d---~--------------- 494 (1351)
+++.+++.++...|+++++||+.+++|.+ |.|..+|+.||| |+.+ |. .. .
T Consensus 440 ~lmlAnd~~l~~~~~~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~ltN~R 519 (757)
T KOG0470|consen 440 YLMLANDPLLGGTPGLITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLTNRR 519 (757)
T ss_pred HHHhhcchhhhcCCcceEeeeccccCCCcCCccccccccccchhhhHHhhhHHHHHHHhccCchhheeccCcceeeeccc
Confidence 99999999999999999999999999999 999999999999 7765 21 11 0
Q ss_pred -----------------CC-C-----------------------------------------------------------
Q psy9001 495 -----------------SD-M----------------------------------------------------------- 497 (1351)
Q Consensus 495 -----------------~~-~----------------------------------------------------------- 497 (1351)
++ +
T Consensus 520 ~~e~~v~y~~~HDq~~v~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfGh~ 599 (757)
T KOG0470|consen 520 YPEKSVNYAESHDQALVGDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFGHP 599 (757)
T ss_pred cccceeeeeeccCCccccceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccCCc
Confidence 00 0
Q ss_pred ----------------------------------cHHHHHHHHHHhhhcccccccCCcceEeecCCCcEEEEEeCceEEE
Q psy9001 498 ----------------------------------TVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFA 543 (1351)
Q Consensus 498 ----------------------------------sl~~f~k~L~~Lr~~~~~L~~g~~~~~~~~~~~~Vlaf~R~~ll~v 543 (1351)
.+.+|.++|+.|...+.++..+-.+....++.+++++|+|..+++|
T Consensus 600 e~~d~~~~~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~k~e~~~~i~fer~~~~~v 679 (757)
T KOG0470|consen 600 EWLDFPRYGNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISLKHEADEVIVFERGPLLFV 679 (757)
T ss_pred cccCCCcccCCccccccCccccccccchhhhhhhhhhhhhhHHHHHHHhccccccccccccccchhhheeeeccCCeEEE
Confidence 0156777777777777788877777888889999999999999999
Q ss_pred EeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcc
Q psy9001 544 FNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRR 623 (1351)
Q Consensus 544 ~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~ 623 (1351)
|||+++.++.+|. ||+..+|+|+.||++|...|||+.+++......+....+.|++
T Consensus 680 fn~h~~~s~~d~~------------------------vg~n~~~~~~iVl~sd~p~~~~~~rl~dt~~~~p~d~~~~g~~ 735 (757)
T KOG0470|consen 680 FNFHDSNSYIDYR------------------------VGFNAPGKYTIVLNSDRPKGGGWNRLDDTALFFPYDFRSEGRP 735 (757)
T ss_pred EEecCCCCCceeE------------------------EEecCCCceEEEECCCCCCCCCccccccccccCccccccCCee
Confidence 9999998999988 9999999999999999999999999988767778888899999
Q ss_pred cEEEEEeCCcEEEEEEECCC
Q psy9001 624 NSIKLYLPTRTGLILTTSPG 643 (1351)
Q Consensus 624 ~si~l~LPpls~~vl~~~~~ 643 (1351)
.++.+++|.+.++||....+
T Consensus 736 ~~l~VY~~~~~a~vl~~~~~ 755 (757)
T KOG0470|consen 736 VSLQVYIPSRTATVLALLDT 755 (757)
T ss_pred eeEEEEeccCcceEeeeccc
Confidence 99999999999999987643
|
|
| >KOG0470|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-68 Score=633.04 Aligned_cols=481 Identities=38% Similarity=0.604 Sum_probs=394.6
Q ss_pred ccCCceeehhchhhhhccchhhHHHHhhhccccceeecCCcEEEEeecCCccEEEEEec-chhhhHHHhhcccccccccc
Q psy9001 666 LGDNGILLMMNYSSINSSIGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQ 744 (1351)
Q Consensus 666 ~~~~~~~~~~~~~~i~~~~~~~~~f~~~y~~~G~~~~~~~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~ 744 (1351)
+-++...++.-...|.+++++|+.|+.+|+.||.|.++|+.+.|++|||+|+.|.|+|| |+|..
T Consensus 74 ~~~~~~~~~~~~~f~~~~~~~l~~~~~~y~~~g~h~~~d~~v~~~ewaP~a~~~s~~gd~n~W~~--------------- 138 (757)
T KOG0470|consen 74 LRERYKQLDDGLEFIGKSEGGLSAFSRGYEPLGTHRTPDGRVDFTEWAPLAEAVSLIGDFNNWNP--------------- 138 (757)
T ss_pred chhhHHHHHHHhhhhhhccCChhhhhccccccceeccCCCceeeeeecccccccccccccCCCCC---------------
Confidence 33556667777788889999999999999999999999999999999999999999997 76411
Q ss_pred ccccccCCccccCCCCCCCCCCcccccccccccCCCCCCcccccc--ccccccEEeeecccccCCCCceeeecCCccccc
Q psy9001 745 VTSFFAASSRTMGNSQSVDPASIHIPELHKLLERDPYLNPYQYEM--KRRYGLMVNFLEQFEKHEDPASIHIPELHKLLE 822 (1351)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m--~~~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1351)
...+| |.++|+| ++.++...++..
T Consensus 139 ----------------------------------------~~~~~~~k~~~g~w--------------~i~l~~~~~~s~ 164 (757)
T KOG0470|consen 139 ----------------------------------------SSNELKPKDDLGVW--------------EIDLPPKVNGSG 164 (757)
T ss_pred ----------------------------------------cccccCccccccee--------------EEecCcccCCCc
Confidence 11223 4469999 889998888888
Q ss_pred cCCCCCCeEEEEEecCCceeeEEEecCcceEEEecCCCCCeeeeeeeeCCCCCCCCccccCCCCCCC-CceEEEeecCCc
Q psy9001 823 RDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPE-NLKIYESHVGIC 901 (1351)
Q Consensus 823 ~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~~~~~~~~~d~~~~~p~~~~~~~w~~~~p~~p~-d~iIYE~HV~~~ 901 (1351)
-+||++.+++.+.+.+| ++..++||||+.+.+.+ ....+.+..|+|++..+|+|++++|+.|+ +++|||+|||+|
T Consensus 165 ~v~H~s~~~~~~~~p~g---~~~~~~~~~~~~~~~~~-~~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgf 240 (757)
T KOG0470|consen 165 AVPHGSVSKIHLSTPYG---ETCKRIPAWATYVDQEG-EGPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGF 240 (757)
T ss_pred cccccceeEEEeecCCc---ceeeccChHhhcccCCC-cccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccc
Confidence 89999999999999999 89999999999999987 47888999999998888888999998896 999999999888
Q ss_pred ccC-CCccc---ccccccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceee
Q psy9001 902 TQE-QKCAS---YEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWEL 977 (1351)
Q Consensus 902 s~~-~~~gt---y~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~ 977 (1351)
|.+ +++-+ |++|+++++||||+|| +|. +|||
T Consensus 241 S~~E~~v~~~~gY~~FteKvlphlK~LG-~Na---------------iqLm----------------------------- 275 (757)
T KOG0470|consen 241 SSHESKVNTRGGYLGFTEKVLPHLKKLG-YNA---------------IQLM----------------------------- 275 (757)
T ss_pred cCCCCccccccchhhhhhhhhhHHHHhC-ccc---------------eEEe-----------------------------
Confidence 865 45555 9999999999999999 353 2444
Q ss_pred ecCCCCCCCccccccCcceeeecccCC-CCCCCCCCcccccc-ccccccccCCCCCHH------HHHHHHHHHHHcCCEE
Q psy9001 978 VLPPNPDGSCKLTHLSQVKLVVRNQHG-HLLDRFGTPEQLKY-LVDECHKAGLFGTPE------QLKYLVDECHKAGLYV 1049 (1351)
Q Consensus 978 ~~pp~~~~~~~i~d~~~~~l~~~~~~G-~~~~~~~sp~~hgY-~~Dy~~idp~yGt~e------dfK~LV~~aH~~GI~V 1049 (1351)
+..+|| ++ ..+|| ++.||+..+||||++ |||.||++||.+||.|
T Consensus 276 ---------------------pi~Ef~~~~-------~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~V 327 (757)
T KOG0470|consen 276 ---------------------PIFEFGHYY-------ASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEV 327 (757)
T ss_pred ---------------------ehhhhhhhh-------hccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEE
Confidence 233332 11 35678 889999999999999 9999999999999999
Q ss_pred EEEeecccccCCccccCcCCCCCC-CccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccc
Q psy9001 1050 LLDVVHSHASKNVLDGLNEFDGTQ-ACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1050 ILDVV~NHts~~~~~~l~~~dg~~-~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m 1128 (1351)
|||||+||++++..++++.|||.+ .+||+.++++.+..||++.|||++|+|+++|+++|+||++||+|||||||+|++|
T Consensus 328 lLDVV~sHaa~n~~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm 407 (757)
T KOG0470|consen 328 LLDVVHSHAAKNSKDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSM 407 (757)
T ss_pred ehhhhhhhcccCcCCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhh
Confidence 999999999998889999999999 7899999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCcccccCCc---CChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCc-ccccccCCcccc--cccc
Q psy9001 1129 LYHNHGCGEGFSGHYDEYFGLN---VDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPAS-CRPVTEGGTGFD--YRLG 1202 (1351)
Q Consensus 1129 ~~~~~g~~~~~~~~~~~~~g~~---~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~-~~p~~~gg~GFd--y~~~ 1202 (1351)
+|.++|.+.+|.|++.+|||.. .+.+++.+++.+++.++...|.+|.+||+.+++|.+ |.|..+||.||| |+.+
T Consensus 408 ~~~~~g~~~~f~gd~~~y~g~~g~~~d~~~l~~lmlAnd~~l~~~~~~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~ 487 (757)
T KOG0470|consen 408 LYTHHGNAAGFDGDYIEYFGTDGSFVDVDALVYLMLANDPLLGGTPGLITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLA 487 (757)
T ss_pred hhhccccccccCCcchhhhccCCCcccccHHHHHHhhcchhhhcCCcceEeeeccccCCCcCCccccccccccchhhhHH
Confidence 9999999999999999999988 899999999999999999999999999999999999 999999998888 5544
Q ss_pred cccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccc-cCccccccCCCCccceeeecccCCC
Q psy9001 1203 QYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR-RNSIKLYLPTRTGIIDEVNLLNNVR 1281 (1351)
Q Consensus 1203 ~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r-~~s~~~y~p~~~~~~~~vnfv~nHD 1281 (1351)
...- +.....|+.. . .+.+ .++...++-+++.+--.+||+++||
T Consensus 488 ~~~~--------------~k~~~~Lk~~------------------~---~~~~~~gs~~~~ltN~R~~e~~v~y~~~HD 532 (757)
T KOG0470|consen 488 VRLF--------------DKWIQLLKGS------------------S---DAEWIMGSIDYTLTNRRYPEKSVNYAESHD 532 (757)
T ss_pred hhhH--------------HHHHHHhccC------------------c---hhheeccCcceeeeccccccceeeeeeccC
Confidence 4110 1112222110 0 0011 2223334455555555588888888
Q ss_pred CCcCCc------------------------ccccccCCHHHHHHHHHHHHccCCccEEEee-cccCCCCcc
Q psy9001 1282 EERNNE------------------------NNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCSTR 1327 (1351)
Q Consensus 1282 ~~rn~~------------------------~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~~~~~ 1327 (1351)
+....+ ......++..+.+.-+..+.+++|+||+||| |+.+|++..
T Consensus 533 q~~v~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfGh~e~~d 603 (757)
T KOG0470|consen 533 QALVGDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFGHPEWLD 603 (757)
T ss_pred CccccceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccCCccccC
Confidence 743211 0011111224566777778889999999999 999998753
|
|
| >PLN03244 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-65 Score=613.66 Aligned_cols=376 Identities=34% Similarity=0.620 Sum_probs=304.8
Q ss_pred cccCCCCCCeEEEEEecCCceeeEEEecCcceEEEecCCCCCeeeeeeeeCCCCCCCCccccCCCCCCCCceEEEeecCC
Q psy9001 821 LERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGI 900 (1351)
Q Consensus 821 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~~~~~~~~~d~~~~~p~~~~~~~w~~~~p~~p~d~iIYE~HV~~ 900 (1351)
.+.++|+++|++.|+..+| . .+||++||++|+++.. +.++++.+|+|++.++|.|++++|++|..++|||||||+
T Consensus 336 ~~~i~H~s~~k~~~~~~~g---~-~~RiPaw~~~~~~~~~-~~~~~~~~w~P~~~~~y~~k~~~p~~p~~lrIYE~HvGm 410 (872)
T PLN03244 336 IPAIPHGSKYRLYFNTPDG---P-LERIPAWATYVLPDDD-GKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIYECHVGI 410 (872)
T ss_pred cCCCCCCCeEEEEEEcCCC---C-cccCCCCeeeEEecCC-CCceeeeEeCCCcccCCccCCCCCCCCCCceEEEEEeee
Confidence 4458999999999999888 5 8999999999999865 559999999999888999999999999999999999999
Q ss_pred cccCCCcccccccccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecC
Q psy9001 901 CTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLP 980 (1351)
Q Consensus 901 ~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~p 980 (1351)
+|+++++|||++|++.+
T Consensus 411 s~~e~kv~ty~eF~~~v--------------------------------------------------------------- 427 (872)
T PLN03244 411 SGSEPKISSFEEFTEKV--------------------------------------------------------------- 427 (872)
T ss_pred cCCCCCcccHHHHhhcc---------------------------------------------------------------
Confidence 99999999999998531
Q ss_pred CCCCCCccccccCcceeeecccCCCCCCCCCCccccccccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccC
Q psy9001 981 PNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 1060 (1351)
Q Consensus 981 p~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~ 1060 (1351)
++||+++++|||++|||+||++||++||+||||||+||++.
T Consensus 428 ---------------------------------------t~fFApssRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~ 468 (872)
T PLN03244 428 ---------------------------------------TNFFAASSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAA 468 (872)
T ss_pred ---------------------------------------CcccccCcccCCHHHHHHHHHHHHHCCCEEEEEecCccCCC
Confidence 24688999999999999999999999999999999999999
Q ss_pred CccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCC
Q psy9001 1061 NVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFS 1140 (1351)
Q Consensus 1061 ~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~ 1140 (1351)
+...++..|+|++..||+.++++.++.|+++.+|+++++||+||+++++||++||||||||||++++|+|.++|+ .+|.
T Consensus 469 d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~-~~f~ 547 (872)
T PLN03244 469 DEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGF-ASFN 547 (872)
T ss_pred ccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeecccc-cccc
Confidence 887789999998888998888888999999999999999999999999999999999999999999999999998 7899
Q ss_pred CCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccC
Q psy9001 1141 GHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQA 1220 (1351)
Q Consensus 1141 ~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n 1220 (1351)
+.+..+++...|.+++.||+++|+.|++.+|++++|||+++++|.+|+|..+||+||||+|++-. .
T Consensus 548 g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnMgw--------------m 613 (872)
T PLN03244 548 GDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSA--------------P 613 (872)
T ss_pred CCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecCcc--------------h
Confidence 99999999999999999999999999999999999999999999999999999999999999822 2
Q ss_pred chhHhhhccCCCCCC-CccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccC-----
Q psy9001 1221 GKYKVVLDSDCSHFG-GFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI----- 1294 (1351)
Q Consensus 1221 ~~~rd~l~~d~~~~~-gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~----- 1294 (1351)
+.+...++.+. ..+ .+..+ .+.. ..+++.....++|.+|||+.....+.++..+
T Consensus 614 dd~lkylk~~p-derw~~~~I----tfsL---------------~~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~ 673 (872)
T PLN03244 614 DMWLDFLDNIP-DHEWSMSKI----VSTL---------------IANKEYADKMLSYAENHNQSISGGRSFAEILFGAID 673 (872)
T ss_pred HHHHHHHHhCC-CcccCHHHH----hhhh---------------hcccCCcceEEEEecccceeccccchHHhhhccccc
Confidence 33344443221 001 00000 0000 0122222223889999998433111111000
Q ss_pred ------------CHHHHHHHHHHHHccCCcc-EEEee-cccCCCCc--------cceeeccCCcce
Q psy9001 1295 ------------QTESNMNGFGIQTLPTQSP-LYLVA-KIEKPCST--------REVVKAPLPFGV 1338 (1351)
Q Consensus 1295 ------------~~~~~r~A~allltspGiP-~If~g-~~~~~~~~--------~~~~~~p~~~~~ 1338 (1351)
.....|++-+++++++|.| |+||| |+.++++- ...--+++.|+.
T Consensus 674 y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr~gN~~s~~~arrdW~L 739 (872)
T PLN03244 674 EDPLGGKELLDRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPMPSNNFSFSLANRCWDL 739 (872)
T ss_pred ccccccchhhhhhhHHHHHHHHHHHHccCccceeecccccCCchheeccccCCCccccccccCccc
Confidence 1113344556788899998 89999 88887742 112224677875
|
|
| >PLN02960 alpha-amylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=616.33 Aligned_cols=439 Identities=36% Similarity=0.626 Sum_probs=327.7
Q ss_pred cccCCceeehhchhhhhccchhhHHHHhhhccccceeecCCcEEEEeecCCccEEEEEec-chhhhHHHhhccccccccc
Q psy9001 665 MLGDNGILLMMNYSSINSSIGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGY 743 (1351)
Q Consensus 665 ~~~~~~~~~~~~~~~i~~~~~~~~~f~~~y~~~G~~~~~~~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~ 743 (1351)
.|-++...+..-...|.+.+++|+.|+.+|+++|+|.+++..+.|+||||+|..+.|+|+ |+|+-.... +.
T Consensus 88 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~wap~a~~~~~~gdfn~w~~~~~~-----~~--- 159 (897)
T PLN02960 88 FLRERHKALKDLKWEIFKRHIDLKEFASGFELLGMHRHPEHRVDFMEWAPGARYCSLVGDFNNWSPTENR-----AR--- 159 (897)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHhhHHHHhccccCcccCeEEEEEcCCceeEEEeecccCCCcccch-----hh---
Confidence 466778888888899999999999999999999999999867999999999999999997 998654310 00
Q ss_pred cccccccCCccccCCCCCCCCCCcccc-cccccccCCCCCCcccccccc-----ccc-------------cEE-------
Q psy9001 744 QVTSFFAASSRTMGNSQSVDPASIHIP-ELHKLLERDPYLNPYQYEMKR-----RYG-------------LMV------- 797 (1351)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~m~~-----~~G-------------~w~------- 797 (1351)
+|-|-.. +.-.| .|-+| -+.+..+.|++ .-+++.-.. +.| -|+
T Consensus 160 -~g~~~~~------~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (897)
T PLN02960 160 -EGYFGHD------DFGYW---FIILEDKLREGEEPDEL-YFQEYNYVDDYDKGDSGIDIEELFQKMNDEYWEPGEDRFI 228 (897)
T ss_pred -ccccccc------ccceE---EEEechhhhcCCCcchh-hhhhhccccccccCCCCCCHHHHHHHhhhhhcCCcchhhh
Confidence 0000000 00011 12221 14455566772 111111100 011 110
Q ss_pred --------------------eeecccc----------------cCCCCc---eeeecC----------------------
Q psy9001 798 --------------------NFLEQFE----------------KHEDPA---SIHIPE---------------------- 816 (1351)
Q Consensus 798 --------------------~~~~~~~----------------~~~~~~---~~~~~~---------------------- 816 (1351)
+++++.+ +++++. .+.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (897)
T PLN02960 229 KNRLEVPAKLYEQMFGPNGPQTLEELGDIPDAETRYKEWKKEHKDDDPSNLPPLDIIDTGQPYDIFNVVTDPVWREKFLE 308 (897)
T ss_pred hccchhHHHHHHHhhCCCCCcchhhhhccCccchhhhhhhhhccCCChhhCCCeeecCCCcccccceeccCHHHHHHHhc
Confidence 0000000 000000 000000
Q ss_pred -------------Cccc-----cccCCCCCCeEEEEEecCCceeeEEEecCcceEEEec--CCCCCeeeeeeeeCCCCCC
Q psy9001 817 -------------LHKL-----LERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTE--PPVVGHAYEQRIWNPKPQD 876 (1351)
Q Consensus 817 -------------~~~~-----~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~--~~~~~~~~d~~~~~p~~~~ 876 (1351)
..+| +.-++||++|+|+|+..+| ..+++||||+++.. ++.++++++ |+|+..+
T Consensus 309 ~~~~~~~~~~~~k~~~gw~~~~ip~~~hG~~Yky~v~~~~g----~~~~vdpyA~~~qp~~~~~~~~~v~---~d~~~~~ 381 (897)
T PLN02960 309 KKPPLPYWEETRKGRKAWLKKYIPAIPHGSKYRVYFNTPDG----PLERVPAWATYVLPDPDGKQWYAIH---WEPPPEE 381 (897)
T ss_pred cCCCCcceeeeeecCCcEEEEEccCCCCCCEEEEEEEeCCC----ceEECCCcceeEeecCCCccceEEE---eCCCCCC
Confidence 0000 2235699999999998877 47899999999954 444344444 4555446
Q ss_pred CCccccCCCCCCCCceEEEeecCCcccCCCcccccccccccccceeccCCCcccccccccccccCCceEEEecCCCCCCC
Q psy9001 877 KHKWTSSKPKKPENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGD 956 (1351)
Q Consensus 877 ~~~w~~~~p~~p~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~ 956 (1351)
+|+|++++|+.+++++|||+|||.++.+...|||.++++..||+||+|| +|. ++||
T Consensus 382 ~y~W~~~~p~~~~~~vIYElHvg~~~~e~~~gtf~~~~e~~LdYLk~LG-vt~---------------IeLm-------- 437 (897)
T PLN02960 382 AYKWKFERPKVPKSLRIYECHVGISGSEPKISSFKEFTQKVLPHVKKAG-YNA---------------IQLI-------- 437 (897)
T ss_pred CCCCCCCCCCCCCCcEEEEEecccccCCCCCCCHHHHHHHHHHHHHHcC-CCE---------------EEEC--------
Confidence 8999988877779999999999999988889999999988899999999 332 2333
Q ss_pred CcccccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHH
Q psy9001 957 FNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQL 1035 (1351)
Q Consensus 957 ~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edf 1035 (1351)
+..++ ....++|| +++||+++++|||++||
T Consensus 438 ------------------------------------------Pv~e~-------~~~~swGY~~~~yfa~~~~yGtp~df 468 (897)
T PLN02960 438 ------------------------------------------GVQEH-------KDYSSVGYKVTNFFAVSSRFGTPDDF 468 (897)
T ss_pred ------------------------------------------CcccC-------CCCCCCCCCcccCCCcccccCCHHHH
Confidence 11111 11235789 89999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q psy9001 1036 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEY 1115 (1351)
Q Consensus 1036 K~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~ey 1115 (1351)
|+||++||++||+||||||+||++.++..++..|+|....||+.+..+.++.|++..|||++++||+||+++++||++||
T Consensus 469 k~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Ey 548 (897)
T PLN02960 469 KRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEY 548 (897)
T ss_pred HHHHHHHHHCCCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998766788899987778887777888899988999999999999999999999999
Q ss_pred CCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCc
Q psy9001 1116 QFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGT 1195 (1351)
Q Consensus 1116 gVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~ 1195 (1351)
||||||||++.+|+|.++|. ..+.|.+..+++...|.+++.||+++|+.|++..|++++|||+.+++|.+++|..+||+
T Consensus 549 hIDGfR~DAV~sMlY~d~g~-~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GGL 627 (897)
T PLN02960 549 RVDGFQFHSLGSMLYTHNGF-ASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGL 627 (897)
T ss_pred CCCceeecccceeeeeccCc-cccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCCC
Confidence 99999999999999999875 34555555566666789999999999999999999999999999999999999999999
Q ss_pred cccccccc
Q psy9001 1196 GFDYRLGQ 1203 (1351)
Q Consensus 1196 GFdy~~~~ 1203 (1351)
||||+|++
T Consensus 628 GFDYkwnm 635 (897)
T PLN02960 628 GFDYYVNL 635 (897)
T ss_pred CcccccCC
Confidence 99999988
|
|
| >PRK14706 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-60 Score=588.29 Aligned_cols=446 Identities=22% Similarity=0.390 Sum_probs=332.7
Q ss_pred HhhhccccceeecCC---cEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCCC
Q psy9001 691 TTSYNKYGIHVQADN---SVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPAS 766 (1351)
Q Consensus 691 ~~~y~~~G~~~~~~~---~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1351)
...|+.+|+|...++ +++||+|||.|++|+|+|+ |+|+.
T Consensus 21 ~~~~~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~------------------------------------- 63 (639)
T PRK14706 21 VRPDHLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNG------------------------------------- 63 (639)
T ss_pred cchhHhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCccc-------------------------------------
Confidence 358999999987652 4999999999999999995 65311
Q ss_pred cccccccccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEE
Q psy9001 767 IHIPELHKLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFL 845 (1351)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 845 (1351)
...+|++ +.|+| ++.|++...| ..|+|+|+..+| ++.
T Consensus 64 ------------------~~~pM~~~~~GvW--------------~~~vpg~~~g-------~~Yky~I~~~~g---~~~ 101 (639)
T PRK14706 64 ------------------FDHPMQRLDFGFW--------------GAFVPGARPG-------QRYKFRVTGAAG---QTV 101 (639)
T ss_pred ------------------ccccccccCCCEE--------------EEEECCCCCC-------CEEEEEEECCCC---CEE
Confidence 2246755 58999 8888876544 678999998777 678
Q ss_pred EecCcceEEEecCCCCCeeeeeeeeCCCCCCCCccccCC------CCCCCCceEEEeecCCcccCC--Cccccccccccc
Q psy9001 846 EQLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK------PKKPENLKIYESHVGICTQEQ--KCASYEDFVRVV 917 (1351)
Q Consensus 846 ~~~dPya~~v~~~~~~~~~~d~~~~~p~~~~~~~w~~~~------p~~p~d~iIYE~HV~~~s~~~--~~gty~~f~~~~ 917 (1351)
+++||||+++..++..+.++.. + +|+|+.+. |+.+++++|||+|||+|+.++ ..++|+++++..
T Consensus 102 ~~~DPYa~~~~~~~~~~svv~~----~----~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l 173 (639)
T PRK14706 102 DKMDPYGSFFEVRPNTASIIWE----D----RFEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDDGWFLNYRELAHRL 173 (639)
T ss_pred eccCcceEEEecCCCCceEECC----C----CCCCCCcccccccCCccCCCcEEEEEehhhcccCCCCCccCHHHHHHHH
Confidence 8999999999987665444332 1 25665443 223357999999999998753 357888888877
Q ss_pred ccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCccee
Q psy9001 918 IPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKL 997 (1351)
Q Consensus 918 lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l 997 (1351)
+++||+|| +| .+|||
T Consensus 174 ~~ylk~lG-~t---------------~velm------------------------------------------------- 188 (639)
T PRK14706 174 GEYVTYMG-YT---------------HVELL------------------------------------------------- 188 (639)
T ss_pred HHHHHHcC-CC---------------EEEcc-------------------------------------------------
Confidence 78899888 33 23444
Q ss_pred eecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCcc
Q psy9001 998 VVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACF 1076 (1351)
Q Consensus 998 ~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~y 1076 (1351)
+..++ ....++|| +++||+++++|||++|||+||++||++||+||||||+||++.+. .++..+||.+.++
T Consensus 189 -Pv~e~-------~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~-~~l~~~dg~~~y~ 259 (639)
T PRK14706 189 -GVMEH-------PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDE-SGLAHFDGGPLYE 259 (639)
T ss_pred -chhcC-------CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcch-hhhhccCCCccee
Confidence 11111 00125788 88999999999999999999999999999999999999999875 6778888877655
Q ss_pred ccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHH
Q psy9001 1077 FHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDAL 1156 (1351)
Q Consensus 1077 f~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~ 1156 (1351)
|.....+.+.+|++..||+++++||++|+++++||++||||||||||++.+|+|.+++.+. ++++++|++.+.+++
T Consensus 260 ~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~----~~~~~~gg~~n~~a~ 335 (639)
T PRK14706 260 YADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTE----WVPNIHGGRENLEAI 335 (639)
T ss_pred ccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccc----ccccccCCcccHHHH
Confidence 6555567788998888999999999999999999999999999999999999999888642 488999999999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCC
Q psy9001 1157 IYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGG 1236 (1351)
Q Consensus 1157 ~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~g 1236 (1351)
.||+++|+.|++.+|++++|||+++++|.+++|+.. |+||||+|++...+ .....+..+ ..++.
T Consensus 336 ~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~-G~gFD~~w~~~w~~--------------~~l~~~~~~-~~~r~ 399 (639)
T PRK14706 336 AFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYKWAMGWMN--------------DTLAYFEQD-PLWRK 399 (639)
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCC-CCccccEeccHHHH--------------HHHHHhccC-chhhh
Confidence 999999999999999999999999999999999875 99999999874332 011111111 00110
Q ss_pred ccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccC------CHHHHHHHHHHHHccC
Q psy9001 1237 FNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI------QTESNMNGFGIQTLPT 1310 (1351)
Q Consensus 1237 f~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~------~~~~~r~A~allltsp 1310 (1351)
+. + .. ......|..+.. ..++.|||+.+.....+...+ +.+++|++++++||.|
T Consensus 400 ~~-------~-------~~-lt~~~~y~~~e~-----~il~~SHDev~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~P 459 (639)
T PRK14706 400 YH-------H-------HK-LTFFNVYRTSEN-----YVLAISHDEVVHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTP 459 (639)
T ss_pred hc-------h-------hc-cchhhhhhcccc-----EecCCCCccccCCccchHhHcCCCHHHHHHHHHHHHHHHHhCC
Confidence 00 0 00 000011211111 236799999876332222212 2367999999999999
Q ss_pred CccEEEee-cccCCCCccceeeccCCccee
Q psy9001 1311 QSPLYLVA-KIEKPCSTREVVKAPLPFGVR 1339 (1351)
Q Consensus 1311 GiP~If~g-~~~~~~~~~~~~~~p~~~~~~ 1339 (1351)
|+|||||| |+..-. .-....+|||...
T Consensus 460 G~pLiFmG~EfG~~~--ew~~~~~l~W~l~ 487 (639)
T PRK14706 460 GKKLLFMGQEFAQGT--EWNHDASLPWYLT 487 (639)
T ss_pred CCcEEEeccccCCCC--CCCcccCCCCccc
Confidence 99999999 666322 2347789999863
|
|
| >PRK12568 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=573.20 Aligned_cols=453 Identities=22% Similarity=0.358 Sum_probs=333.2
Q ss_pred HHhhhccccceeec---CCcEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCC
Q psy9001 690 FTTSYNKYGIHVQA---DNSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPA 765 (1351)
Q Consensus 690 f~~~y~~~G~~~~~---~~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1351)
-.+.|+.+|+|... ..+|+|++|||+|++|+|+|+ |+|+
T Consensus 120 ~~~~y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDFN~Wd------------------------------------- 162 (730)
T PRK12568 120 GQALRRALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDFNGWD------------------------------------- 162 (730)
T ss_pred hhhhHHhcCCeEeeECCCCcEEEEEECCCCCEEEEEEecCCCC-------------------------------------
Confidence 34689999999753 224999999999999999995 6531
Q ss_pred CcccccccccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeE
Q psy9001 766 SIHIPELHKLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNF 844 (1351)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 844 (1351)
...++|++ +.|+| ++.||+...| ..|+|+|+..+| ++
T Consensus 163 ------------------g~~~pM~~~~~GVW--------------elfipg~~~G-------~~YKYeI~~~~G---~~ 200 (730)
T PRK12568 163 ------------------VRRHPMRQRIGGFW--------------ELFLPRVEAG-------ARYKYAITAADG---RV 200 (730)
T ss_pred ------------------ccceecccCCCCEE--------------EEEECCCCCC-------CEEEEEEEcCCC---eE
Confidence 12356754 68999 8888887666 667999998888 67
Q ss_pred EEecCcceEEEecCCCC-Ceeeeee--eeCCCCCCCCccccCCCC--CCCCceEEEeecCCcccCC--Cccccccccccc
Q psy9001 845 LEQLSPWATYVTEPPVV-GHAYEQR--IWNPKPQDKHKWTSSKPK--KPENLKIYESHVGICTQEQ--KCASYEDFVRVV 917 (1351)
Q Consensus 845 ~~~~dPya~~v~~~~~~-~~~~d~~--~~~p~~~~~~~w~~~~p~--~p~d~iIYE~HV~~~s~~~--~~gty~~f~~~~ 917 (1351)
..++||||+++..++.. ++|.+.. .|++ .+|...+++ .+++++|||+|||+|+.+. ..++|+++++..
T Consensus 201 ~~k~DPYA~~~e~~p~~asvV~~~~~~~W~d-----~~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~l 275 (730)
T PRK12568 201 LLKADPVARQTELPPATASVVPSAAAFAWTD-----AAWMARRDPAAVPAPLSIYEVHAASWRRDGHNQPLDWPTLAEQL 275 (730)
T ss_pred eecCCCcceEeecCCCCCeEEcCCCCCCCCC-----hhhhhcccccCCCCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHH
Confidence 88999999999987754 4444331 1221 134443422 3489999999999999754 357899999888
Q ss_pred ccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCccee
Q psy9001 918 IPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKL 997 (1351)
Q Consensus 918 lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l 997 (1351)
+|+||+|| |+. ++|+
T Consensus 276 l~ylk~LG-vt~---------------I~Lm------------------------------------------------- 290 (730)
T PRK12568 276 IPYVQQLG-FTH---------------IELL------------------------------------------------- 290 (730)
T ss_pred HHHHHHcC-CCE---------------EEEC-------------------------------------------------
Confidence 89999988 342 2333
Q ss_pred eecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCcc
Q psy9001 998 VVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACF 1076 (1351)
Q Consensus 998 ~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~y 1076 (1351)
+..++ ....++|| +++||+++|+||+++|||+||++||++||+||||+|+||++.+. .++..|++...+.
T Consensus 291 -Pi~e~-------~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~-~~l~~fdg~~~Ye 361 (730)
T PRK12568 291 -PITEH-------PFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDA-HGLAQFDGAALYE 361 (730)
T ss_pred -ccccC-------CCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCccc-cccccCCCccccc
Confidence 11110 00135788 78999999999999999999999999999999999999999875 5677888764332
Q ss_pred ccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHH
Q psy9001 1077 FHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDAL 1156 (1351)
Q Consensus 1077 f~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~ 1156 (1351)
+.....+.+..|++..||+++|+||++|+++++||++||||||||||++.+|++.++++..|.| .++.+|++.+.+++
T Consensus 362 ~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w--~pn~~gg~en~ea~ 439 (730)
T PRK12568 362 HADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEW--VPNAHGGRENLEAV 439 (730)
T ss_pred cCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccc--cccccCCccChHHH
Confidence 2233346778898778999999999999999999999999999999999999999999888876 45678888899999
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCC
Q psy9001 1157 IYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGG 1236 (1351)
Q Consensus 1157 ~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~g 1236 (1351)
.||+++|+.|++.+|++++|||+++.+|.++.|...||+|||++|++...+ ...+.+..| ..+|.
T Consensus 440 ~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm~--------------d~l~y~~~d-p~~r~ 504 (730)
T PRK12568 440 AFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWMH--------------DTLHYMQRD-PAERA 504 (730)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCChhHH--------------HHHHHHhhC-chhhh
Confidence 999999999999999999999999999999999999999999999984443 112222211 11111
Q ss_pred ccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccC------CHHHHHHHHHHHHccC
Q psy9001 1237 FNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI------QTESNMNGFGIQTLPT 1310 (1351)
Q Consensus 1237 f~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~------~~~~~r~A~allltsp 1310 (1351)
+.. ........|.-+.. ..+..+||+......++.... +-+++|+.+++++|.|
T Consensus 505 ~~h---------------~~ltf~~~y~~~e~-----fvlp~SHDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~P 564 (730)
T PRK12568 505 HHH---------------SQLTFGLVYAFSER-----FVLPLSHDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHP 564 (730)
T ss_pred hhh---------------hhhhhhhhhhhhcc-----EeccCCCcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 100 00001112222222 346779998765323322211 1267899999999999
Q ss_pred CccEEEeecccCCCCccceeeccCCcce
Q psy9001 1311 QSPLYLVAKIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1311 GiP~If~g~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
|.||||||+.=.+.. .--...+|+|..
T Consensus 565 GkkLlFmG~Efgq~~-ew~~~~~ldW~l 591 (730)
T PRK12568 565 GDKLLFMGAEFGQWA-DWNHDQSLDWHL 591 (730)
T ss_pred CcceeeCchhhCCcc-cccCCCCccccc
Confidence 999999994322221 223446889986
|
|
| >PRK14705 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=594.46 Aligned_cols=448 Identities=24% Similarity=0.392 Sum_probs=334.1
Q ss_pred HHhhhccccceeecC-------CcEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCC
Q psy9001 690 FTTSYNKYGIHVQAD-------NSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQS 761 (1351)
Q Consensus 690 f~~~y~~~G~~~~~~-------~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (1351)
-.+.|+++|+|.... .+|+|++|||+|++|+|+|+ |+|..
T Consensus 616 ~~~~y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~-------------------------------- 663 (1224)
T PRK14705 616 HEKLWDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDG-------------------------------- 663 (1224)
T ss_pred hhhHHHhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCC--------------------------------
Confidence 345899999997532 25999999999999999994 66411
Q ss_pred CCCCCcccccccccccCCCCCCcccccccc--ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCC
Q psy9001 762 VDPASIHIPELHKLLERDPYLNPYQYEMKR--RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYG 839 (1351)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~--~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 839 (1351)
...+|++ +.|+| ++.||+...| ..|+|+|+..+|
T Consensus 664 -----------------------~~~~m~~~~~~GvW--------------~~fipg~~~G-------~~Yky~i~~~~g 699 (1224)
T PRK14705 664 -----------------------REHSMRSLGSSGVW--------------ELFIPGVVAG-------ACYKFEILTKAG 699 (1224)
T ss_pred -----------------------CcccceECCCCCEE--------------EEEECCCCCC-------CEEEEEEEcCCC
Confidence 2246754 47999 8888877666 567999998888
Q ss_pred ceeeEEEecCcceEEEecCCC-CCeeeeee-eeCCCCCCCCccccCCCC-C--CCCceEEEeecCCcccCCCcccccccc
Q psy9001 840 LMVNFLEQLSPWATYVTEPPV-VGHAYEQR-IWNPKPQDKHKWTSSKPK-K--PENLKIYESHVGICTQEQKCASYEDFV 914 (1351)
Q Consensus 840 ~~~~~~~~~dPya~~v~~~~~-~~~~~d~~-~~~p~~~~~~~w~~~~p~-~--p~d~iIYE~HV~~~s~~~~~gty~~f~ 914 (1351)
++.++.||||+++..++. .|+|+|.. .|++. +|...+.+ . .++++|||+|||.|+.. ++|+++.
T Consensus 700 ---~~~~k~DPyA~~~e~~p~~aS~V~d~~~~w~d~-----~W~~~r~~~~~~~~p~~IYEvHvgsf~~~---~~~~~l~ 768 (1224)
T PRK14705 700 ---QWVEKADPLAFGTEVPPLTASRVVEASYAFKDA-----EWMSARAERDPHNSPMSVYEVHLGSWRLG---LGYRELA 768 (1224)
T ss_pred ---cEEecCCccccccccCCCCCeEEeCCCCCcCCh-----hhhhccccCCCCcCCcEEEEEEecccccC---CchHHHH
Confidence 788999999999998764 57887763 24433 46554422 2 37899999999999873 7899998
Q ss_pred cccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCc
Q psy9001 915 RVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQ 994 (1351)
Q Consensus 915 ~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~ 994 (1351)
+..+|+||+|| |+ .++||
T Consensus 769 ~~lldYlk~LG-vt---------------~IeLm---------------------------------------------- 786 (1224)
T PRK14705 769 KELVDYVKWLG-FT---------------HVEFM---------------------------------------------- 786 (1224)
T ss_pred HHHHHHHHHhC-CC---------------EEEEC----------------------------------------------
Confidence 87789999988 34 23333
Q ss_pred ceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCC
Q psy9001 995 VKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ 1073 (1351)
Q Consensus 995 ~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~ 1073 (1351)
+..++- ...++|| +++||+++++|||++|||+||++||++||+||||+|+||++.+. .++..|++..
T Consensus 787 ----Pv~e~p-------~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~-~~l~~fdg~~ 854 (1224)
T PRK14705 787 ----PVAEHP-------FGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDS-WALAQFDGQP 854 (1224)
T ss_pred ----ccccCC-------CCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcch-hhhhhcCCCc
Confidence 111110 0136889 89999999999999999999999999999999999999998875 5677888875
Q ss_pred CccccCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCC
Q psy9001 1074 ACFFHDG-PRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 1152 (1351)
Q Consensus 1074 ~~yf~~~-~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d 1152 (1351)
. |++.+ ..+.++.|++..||+++++||+||+++++||++||||||||||++.+|+|.++++..+.| .++.+|++.+
T Consensus 855 ~-y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w--~pn~~gg~en 931 (1224)
T PRK14705 855 L-YEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQW--RPNRFGGREN 931 (1224)
T ss_pred c-cccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccc--cccccCCccC
Confidence 3 44443 357788999888999999999999999999999999999999999999999999888886 6789999999
Q ss_pred hhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCC
Q psy9001 1153 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCS 1232 (1351)
Q Consensus 1153 ~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~ 1232 (1351)
.+++.||+++|+.|++.+|++++|||+++.+|.+++|...||+||||+|++..|+..+. .+..| .
T Consensus 932 ~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmgwmhd~l~--------------Y~~~d-p 996 (1224)
T PRK14705 932 LEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMGWMHDSLK--------------YASED-P 996 (1224)
T ss_pred hHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccCCCccCCcEecchhhHHHHH--------------HhhhC-c
Confidence 99999999999999999999999999999999999999999999999999966651111 11111 0
Q ss_pred CCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCccccc-ccC-----CHHHHHHHHHHH
Q psy9001 1233 HFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMK-RYI-----QTESNMNGFGIQ 1306 (1351)
Q Consensus 1233 ~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~-~~~-----~~~~~r~A~all 1306 (1351)
.++.+... .......|..+.. ..+..+||+.......+. ++. +...+|++++++
T Consensus 997 ~~r~~~~~---------------~ltf~~~ya~~e~-----fvl~~SHDevvhgk~sl~~km~Gd~~~k~a~lR~~~a~~ 1056 (1224)
T PRK14705 997 INRKWHHG---------------TITFSLVYAFTEN-----FLLPISHDEVVHGKGSMLRKMPGDRWQQLANLRAFLAYQ 1056 (1224)
T ss_pred chhhcccc---------------hHHHHHHHHhhcC-----EecccccccccccchhHHHhCCCcHHHHHHHHHHHHHHH
Confidence 01110000 0000112221211 223457997643211111 111 125689999999
Q ss_pred HccCCccEEEee-cccCCCCccceeeccCCcce
Q psy9001 1307 TLPTQSPLYLVA-KIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1307 ltspGiP~If~g-~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
++.||+|||||| |+.....- --..+|.|..
T Consensus 1057 ~~~PGk~LlFMG~Efgq~~ew--~~~~~LdW~l 1087 (1224)
T PRK14705 1057 WAHPGKQLIFMGTEFGQEAEW--SEQHGLDWFL 1087 (1224)
T ss_pred HhcCCcCEEECccccCCCCCc--cccccCCCcc
Confidence 999999999999 45444221 2335678876
|
|
| >TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-58 Score=574.29 Aligned_cols=446 Identities=27% Similarity=0.457 Sum_probs=328.0
Q ss_pred hhhccccceeec-C--CcEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCc
Q psy9001 692 TSYNKYGIHVQA-D--NSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASI 767 (1351)
Q Consensus 692 ~~y~~~G~~~~~-~--~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1351)
..|+.+|+|+.. + ++++||+|||.|++|.|+++ |+|+
T Consensus 12 ~~~~~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~dfn~w~--------------------------------------- 52 (613)
T TIGR01515 12 RSYELLGSHYMELDGVSGTRFCVWAPNAREVRVAGDFNYWD--------------------------------------- 52 (613)
T ss_pred ChHHhcCceEeccCCcCcEEEEEECCCCCEEEEEEecCCCC---------------------------------------
Confidence 479999999986 1 35999999999999999994 5421
Q ss_pred ccccccccccCCCCCCcccccccc--ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEE
Q psy9001 768 HIPELHKLLERDPYLNPYQYEMKR--RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFL 845 (1351)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~m~~--~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 845 (1351)
....+|.+ +.|+| ++.|++...| ..|+|+|+..+| ++.
T Consensus 53 ----------------~~~~~m~~~~~~Gvw--------------~~~i~~~~~g-------~~Y~y~v~~~~g---~~~ 92 (613)
T TIGR01515 53 ----------------GREHPMRRRNDNGIW--------------ELFIPGIGEG-------ELYKYEIVTNNG---EIR 92 (613)
T ss_pred ----------------CceecceEecCCCEE--------------EEEeCCCCCC-------CEEEEEEECCCC---cEE
Confidence 01245644 37999 8888876554 678999987777 577
Q ss_pred EecCcceEEEecCCC-CCeeeeee--eeCCCCCCCCccccCCCC-CC--CCceEEEeecCCcccCCCccccccccccccc
Q psy9001 846 EQLSPWATYVTEPPV-VGHAYEQR--IWNPKPQDKHKWTSSKPK-KP--ENLKIYESHVGICTQEQKCASYEDFVRVVIP 919 (1351)
Q Consensus 846 ~~~dPya~~v~~~~~-~~~~~d~~--~~~p~~~~~~~w~~~~p~-~p--~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp 919 (1351)
+++||||+++..++. .++|+|.. .|+|. +|+..+++ .| .+++|||+|||+|+.+ |+|+++++..++
T Consensus 93 ~~~DPYA~~~~~~~~~~s~v~d~~~~~w~~~-----~w~~~~~~~~~~~~~~~iYe~hv~~~~~~---g~~~~i~~~l~d 164 (613)
T TIGR01515 93 LKADPYAFYAEVRPNTASLVYDLEGYSWQDQ-----KWQEKRKAKTPYEKPVSIYELHLGSWRHG---LSYRELADQLIP 164 (613)
T ss_pred EeCCCCEeeeccCCCCcEEEECCccCccCch-----hhhhcccccCcccCCceEEEEehhhccCC---CCHHHHHHHHHH
Confidence 899999999998764 57778753 35554 58776632 33 5799999999999865 999999988779
Q ss_pred ceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcceeee
Q psy9001 920 RIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVV 999 (1351)
Q Consensus 920 ~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~ 999 (1351)
+||+|| +|. ++|+ +
T Consensus 165 yl~~LG-vt~---------------i~L~--------------------------------------------------P 178 (613)
T TIGR01515 165 YVKELG-FTH---------------IELL--------------------------------------------------P 178 (613)
T ss_pred HHHHcC-CCE---------------EEEC--------------------------------------------------C
Confidence 999988 332 2332 1
Q ss_pred cccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCcccc
Q psy9001 1000 RNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH 1078 (1351)
Q Consensus 1000 ~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~ 1078 (1351)
..++ ....+||| ++|||+++|+|||++|||+||++||++||+||||||+||++.+. .++..+++.. .|++
T Consensus 179 i~e~-------~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~-~~~~~~~~~~-~y~~ 249 (613)
T TIGR01515 179 VAEH-------PFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDD-HGLAEFDGTP-LYEH 249 (613)
T ss_pred cccC-------CCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCcc-chhhccCCCc-ceec
Confidence 1110 00136899 89999999999999999999999999999999999999999875 4566676654 3333
Q ss_pred CC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHH
Q psy9001 1079 DG-PRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALI 1157 (1351)
Q Consensus 1079 ~~-~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~ 1157 (1351)
.+ ..+..+.|+..+||+++|+||++|+++++||++||||||||||++.+|++.+++...+.|. .+.++...+.++..
T Consensus 250 ~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 327 (613)
T TIGR01515 250 KDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWS--PNEDGGRENLEAVD 327 (613)
T ss_pred cCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhcccccccccc--ccccCCcCChHHHH
Confidence 33 3455677888899999999999999999999999999999999999999998888777653 34566677889999
Q ss_pred HHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCc
Q psy9001 1158 YLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGF 1237 (1351)
Q Consensus 1158 fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf 1237 (1351)
||+++++.|++.+|++++|||++++++.++.+...||+|||++|++.+|+..+.+... ...+ +.+
T Consensus 328 fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~----~~~~-----------~~~ 392 (613)
T TIGR01515 328 FLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMST----DPVE-----------RQY 392 (613)
T ss_pred HHHHHHHHHHHHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhh----Chhh-----------Hhh
Confidence 9999999999999999999999999999999999999999999997666522111100 0111 111
Q ss_pred cccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCC------HHHHHHHHHHHHccCC
Q psy9001 1238 NRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQ------TESNMNGFGIQTLPTQ 1311 (1351)
Q Consensus 1238 ~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~------~~~~r~A~allltspG 1311 (1351)
...... . + ..+.-... ..++.+||+......++...+. .+++|++++++||+||
T Consensus 393 ~~~~~~--~------------~-~~~~~~e~-----~~~~~sHD~~~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG 452 (613)
T TIGR01515 393 HHQLIT--F------------S-MLYAFSEN-----FVLPLSHDEVVHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPG 452 (613)
T ss_pred cccccc--H------------H-HHHHhhhc-----cccCCCCCCcccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCC
Confidence 000000 0 0 00100011 2356789986543333322221 3688999999999999
Q ss_pred ccEEEee-cccCCCCccceeeccCCcce
Q psy9001 1312 SPLYLVA-KIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1312 iP~If~g-~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
+|||||| |+...+.-. ...+|+|..
T Consensus 453 ~plif~G~E~g~~~~~~--~~~~l~W~~ 478 (613)
T TIGR01515 453 KKLLFMGSEFAQGSEWN--DTEQLDWHL 478 (613)
T ss_pred CCEEEcchhcCcCCCCC--CCccCCCcc
Confidence 9999999 555533322 346899974
|
A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here. |
| >PRK05402 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=578.73 Aligned_cols=449 Identities=27% Similarity=0.463 Sum_probs=331.8
Q ss_pred HHhhhccccceeec---CCcEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCC
Q psy9001 690 FTTSYNKYGIHVQA---DNSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPA 765 (1351)
Q Consensus 690 f~~~y~~~G~~~~~---~~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1351)
....|+.+|+|... .++++||+|||.|++|+|+|+ |+|+
T Consensus 113 ~~~~~~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~gdfn~w~------------------------------------- 155 (726)
T PRK05402 113 HLRLYETLGAHPVTVDGVSGVRFAVWAPNARRVSVVGDFNGWD------------------------------------- 155 (726)
T ss_pred cchhhhccccEEeccCCCCcEEEEEECCCCCEEEEEEEcCCCC-------------------------------------
Confidence 44589999999885 356999999999999999994 5431
Q ss_pred CcccccccccccCCCCCCcccccccc--ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceee
Q psy9001 766 SIHIPELHKLLERDPYLNPYQYEMKR--RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVN 843 (1351)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~m~~--~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 843 (1351)
+...+|++ +.|+| +++|++...| ..|+|++...+| +
T Consensus 156 ------------------~~~~~m~~~~~~Gvw--------------~~~i~~~~~g-------~~Y~y~v~~~~g---~ 193 (726)
T PRK05402 156 ------------------GRRHPMRLRGESGVW--------------ELFIPGLGEG-------ELYKFEILTADG---E 193 (726)
T ss_pred ------------------CccccceEcCCCCEE--------------EEEeCCCCCC-------CEEEEEEeCCCC---c
Confidence 11245754 47999 7888865444 678999987777 6
Q ss_pred EEEecCcceEEEecCCC-CCeeeeeeeeCCCCCCCCccccC-----CCC---CCCCceEEEeecCCcccC---CCccccc
Q psy9001 844 FLEQLSPWATYVTEPPV-VGHAYEQRIWNPKPQDKHKWTSS-----KPK---KPENLKIYESHVGICTQE---QKCASYE 911 (1351)
Q Consensus 844 ~~~~~dPya~~v~~~~~-~~~~~d~~~~~p~~~~~~~w~~~-----~p~---~p~d~iIYE~HV~~~s~~---~~~gty~ 911 (1351)
+.++.||||+++..++. .++|+|. ++|+|+.+ +++ .+++++|||+|||+|+.+ ...|+|+
T Consensus 194 ~~~~~DPYa~~~~~~~~~~s~v~d~--------~~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~~g~~~ 265 (726)
T PRK05402 194 LLLKADPYAFAAEVRPATASIVADL--------SQYQWNDAAWMEKRAKRNPLDAPISIYEVHLGSWRRHEDGGRFLSYR 265 (726)
T ss_pred EeecCCCceEEEecCCCCcEEEeCC--------ccCCCCCcchhhcccccCcccCCcEEEEEehhhhccCCCCCcccCHH
Confidence 78899999999998654 4566554 23555544 322 347899999999999965 3468899
Q ss_pred ccccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccc
Q psy9001 912 DFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTH 991 (1351)
Q Consensus 912 ~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d 991 (1351)
++++..+|+||+|| +|. ++|+
T Consensus 266 ~i~~~l~~ylk~LG-v~~---------------i~L~------------------------------------------- 286 (726)
T PRK05402 266 ELADQLIPYVKEMG-FTH---------------VELL------------------------------------------- 286 (726)
T ss_pred HHHHHHHHHHHHcC-CCE---------------EEEC-------------------------------------------
Confidence 98888779999988 342 2332
Q ss_pred cCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCC
Q psy9001 992 LSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD 1070 (1351)
Q Consensus 992 ~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~d 1070 (1351)
+..++ ....+||| ++|||+|+|+|||++|||+||++||++||+||||+|+||++.++ .++..++
T Consensus 287 -------Pi~e~-------~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~-~~~~~~~ 351 (726)
T PRK05402 287 -------PIAEH-------PFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDA-HGLARFD 351 (726)
T ss_pred -------CcccC-------CCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc-cchhccC
Confidence 11110 01136899 99999999999999999999999999999999999999999875 4577777
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCc
Q psy9001 1071 GTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN 1150 (1351)
Q Consensus 1071 g~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~ 1150 (1351)
+...+++.....+.++.|++.+||+++|+||++|+++++||++||||||||||++.+|++.+++..+++| .++.+++.
T Consensus 352 ~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~--~~~~~~~~ 429 (726)
T PRK05402 352 GTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEW--IPNIYGGR 429 (726)
T ss_pred CCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccccc--ccccccCc
Confidence 7643333333346678898889999999999999999999999999999999999999998888877765 45677777
Q ss_pred CChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccC
Q psy9001 1151 VDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSD 1230 (1351)
Q Consensus 1151 ~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d 1230 (1351)
.+.+++.||+++++.|++.+|++++|||+++.++.++++...+|+||||+|++.+++. .++ .+..+
T Consensus 430 ~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~-------------~l~-~~~~~ 495 (726)
T PRK05402 430 ENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHD-------------TLD-YMERD 495 (726)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcCccccccCCCCCCCceecCCcchH-------------HHH-HHhhC
Confidence 8889999999999999999999999999999999999998889999999998755431 111 11000
Q ss_pred CCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCC------HHHHHHHHH
Q psy9001 1231 CSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQ------TESNMNGFG 1304 (1351)
Q Consensus 1231 ~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~------~~~~r~A~a 1304 (1351)
..++.+.... ... + ..+.-... .+++.+||+.+....++...+. .+++|++++
T Consensus 496 -~~~~~~~~~~--~~~------------~-~~~~~~e~-----~~l~~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~ 554 (726)
T PRK05402 496 -PIYRKYHHNE--LTF------------S-LLYAYSEN-----FVLPLSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYG 554 (726)
T ss_pred -cccccccccc--hhH------------H-HhHhhhcc-----ccCCCCCceeeeCcccHHhhCCCCHHHHHHHHHHHHH
Confidence 0001000000 000 0 00100011 3467899987543333332221 257899999
Q ss_pred HHHccCCccEEEee-cccCCCCccceeeccCCcce
Q psy9001 1305 IQTLPTQSPLYLVA-KIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1305 llltspGiP~If~g-~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
++||+||+|||||| |+...+.... ++||+|..
T Consensus 555 ~~~t~pG~Plif~G~E~g~~~~~~~--~~~l~W~~ 587 (726)
T PRK05402 555 YMWAHPGKKLLFMGGEFGQGREWNH--DASLDWHL 587 (726)
T ss_pred HHHHCCCcCEeeCchhcCCCCCCCc--cCcCCccc
Confidence 99999999999999 7887776543 79999975
|
|
| >PRK12313 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-57 Score=566.76 Aligned_cols=444 Identities=24% Similarity=0.411 Sum_probs=323.2
Q ss_pred hhhccccceeecCC---cEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCc
Q psy9001 692 TSYNKYGIHVQADN---SVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASI 767 (1351)
Q Consensus 692 ~~y~~~G~~~~~~~---~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1351)
..|+.+|+|++.++ +++||+|||.|++|+|+|+ |+|+
T Consensus 22 ~~~~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdfn~w~--------------------------------------- 62 (633)
T PRK12313 22 RLYEYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDFNDWR--------------------------------------- 62 (633)
T ss_pred cchhcCCcEEeccCCcccEEEEEECCCCCEEEEEEecCCCC---------------------------------------
Confidence 35999999998774 6999999999999999994 5531
Q ss_pred ccccccccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEE
Q psy9001 768 HIPELHKLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLE 846 (1351)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 846 (1351)
+...+|.+ ..|+| ++++++...| ..|+|++...+| ++.+
T Consensus 63 ----------------~~~~~m~~~~~Gvw--------------~~~i~~~~~g-------~~Y~y~v~~~~g---~~~~ 102 (633)
T PRK12313 63 ----------------GNAHPLVRRESGVW--------------EGFIPGAKEG-------QLYKYHISRQDG---YQVE 102 (633)
T ss_pred ----------------cccccccccCCCEE--------------EEEeCCCCCC-------CEEEEEEECCCC---eEEe
Confidence 12245755 58999 7888865444 678999977777 6789
Q ss_pred ecCcceEEEecCC-CCCeeeeeeeeCCCCCCCCccccCC-----CC---CCCCceEEEeecCCcccC--CCccccccccc
Q psy9001 847 QLSPWATYVTEPP-VVGHAYEQRIWNPKPQDKHKWTSSK-----PK---KPENLKIYESHVGICTQE--QKCASYEDFVR 915 (1351)
Q Consensus 847 ~~dPya~~v~~~~-~~~~~~d~~~~~p~~~~~~~w~~~~-----p~---~p~d~iIYE~HV~~~s~~--~~~gty~~f~~ 915 (1351)
+.||||+++..+. ..++|+|.. +|.|+.+. ++ ...+++|||+|||.|+.+ ...|+|+++++
T Consensus 103 ~~DPya~~~~~~~~~~s~v~d~~--------~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~g~~~~~~~ 174 (633)
T PRK12313 103 KIDPFAFYFEARPGTASIVWDLP--------EYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGRPLSYRELAD 174 (633)
T ss_pred cCCCceEEEecCCCCceEECCCc--------ccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCCccCHHHHHH
Confidence 9999999998743 345665542 35565543 21 126899999999999975 34689999888
Q ss_pred ccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcc
Q psy9001 916 VVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQV 995 (1351)
Q Consensus 916 ~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~ 995 (1351)
..||+||+|| +|. ||.+.|
T Consensus 175 ~ll~yl~~LG-v~~--------------i~L~Pi---------------------------------------------- 193 (633)
T PRK12313 175 ELIPYVKEMG-YTH--------------VEFMPL---------------------------------------------- 193 (633)
T ss_pred HHHHHHHHcC-CCE--------------EEeCch----------------------------------------------
Confidence 7789999988 342 122221
Q ss_pred eeeecccCCCCCCCCCCc--ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCC
Q psy9001 996 KLVVRNQHGHLLDRFGTP--EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGT 1072 (1351)
Q Consensus 996 ~l~~~~~~G~~~~~~~sp--~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~ 1072 (1351)
+.+| .+||| ++|||+|+|+|||++|||+||++||++||+||||+|+||++.++ .++..+++.
T Consensus 194 --------------~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~-~~~~~~~~~ 258 (633)
T PRK12313 194 --------------MEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDD-DGLAYFDGT 258 (633)
T ss_pred --------------hcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc-ccccccCCC
Confidence 1111 36899 99999999999999999999999999999999999999999875 455667765
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCC
Q psy9001 1073 QACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 1152 (1351)
Q Consensus 1073 ~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d 1152 (1351)
..+.|.....+.++.|++.+||++||+||++|+++++||++||||||||||++.+|++.+++ ..+.| .++.+|...+
T Consensus 259 ~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~-~~~~~--~~~~~~~~~~ 335 (633)
T PRK12313 259 PLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYD-EEGEW--TPNKYGGREN 335 (633)
T ss_pred cceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccc-cccCc--CCcccCCCCC
Confidence 44333333345667898889999999999999999999999999999999999999887766 44333 2345566667
Q ss_pred hhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCC
Q psy9001 1153 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCS 1232 (1351)
Q Consensus 1153 ~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~ 1232 (1351)
.+++.||+++++.|++.+|++++|||+++.++.++.+...+|+|||++|+..+++. ....+..+ .
T Consensus 336 ~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~--------------~~~~~~~~-~ 400 (633)
T PRK12313 336 LEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMND--------------TLRYFEED-P 400 (633)
T ss_pred cHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHH--------------HHHHhhhC-c
Confidence 78899999999999999999999999999999999999999999999998755431 11111100 0
Q ss_pred CCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCC------HHHHHHHHHHH
Q psy9001 1233 HFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQ------TESNMNGFGIQ 1306 (1351)
Q Consensus 1233 ~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~------~~~~r~A~all 1306 (1351)
.++.+. ... ..+ +.......+ .+++.+||+..+...++...+. ..++|++++++
T Consensus 401 ~~~~~~-------~~~--~~~-----~~~~~~~e~------~~l~~sHD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~ 460 (633)
T PRK12313 401 IYRKYH-------HNL--LTF-----SFMYAFSEN------FVLPFSHDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYM 460 (633)
T ss_pred cccccc-------ccc--chH-----HHhhhhhcc------cccCCCCcccccCCccHHHhcCCCHHHHHHHHHHHHHHH
Confidence 001000 000 000 000000111 3466899987553334333221 26789999999
Q ss_pred HccCCccEEEee-cccCCCCccceeeccCCcce
Q psy9001 1307 TLPTQSPLYLVA-KIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1307 ltspGiP~If~g-~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
||+||+|||||| |+...+.-. ..+||+|..
T Consensus 461 ~t~pG~Plif~G~E~g~~~~~~--~~~~l~W~~ 491 (633)
T PRK12313 461 ITHPGKKLLFMGSEFGQFLEWK--HDESLEWHL 491 (633)
T ss_pred HhCCCCcEeecccccccCccCC--ccCCCCccc
Confidence 999999999999 666555433 348999975
|
|
| >COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-56 Score=538.95 Aligned_cols=428 Identities=28% Similarity=0.403 Sum_probs=336.9
Q ss_pred hhhccccceeecCC--cEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcc
Q psy9001 692 TSYNKYGIHVQADN--SVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIH 768 (1351)
Q Consensus 692 ~~y~~~G~~~~~~~--~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (1351)
..|+++|+|..+.| .++|++|||.|+.|.|+|+ |+|..
T Consensus 21 ~~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn~w~~--------------------------------------- 61 (628)
T COG0296 21 RLYEKLGAHPIENGVSGVRFRVWAPNARRVSLVGDFNDWDG--------------------------------------- 61 (628)
T ss_pred hhHhhhCcccccCCCCceEEEEECCCCCeEEEEeecCCccc---------------------------------------
Confidence 47899999988776 6999999999999999995 65411
Q ss_pred cccccccccCCCCCCccccccc--cccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEE
Q psy9001 769 IPELHKLLERDPYLNPYQYEMK--RRYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLE 846 (1351)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~m~--~~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 846 (1351)
...+|+ +++|+| +++||+...| ..|||+|+..+| ....
T Consensus 62 ----------------~~~~~~~~~~~G~w--------------e~~vp~~~~G-------~~Yky~l~~~~g---~~~~ 101 (628)
T COG0296 62 ----------------RRMPMRDRKESGIW--------------ELFVPGAPPG-------TRYKYELIDPSG---QLRL 101 (628)
T ss_pred ----------------eecccccCCCCceE--------------EEeccCCCCC-------CeEEEEEeCCCC---ceee
Confidence 123342 368999 8888876665 678999999998 6789
Q ss_pred ecCcceEEEecCCC-CCeeeeeeeeCCCCCCCCccc----cCCCC-C-CCCceEEEeecCCcccCCCccccccccccccc
Q psy9001 847 QLSPWATYVTEPPV-VGHAYEQRIWNPKPQDKHKWT----SSKPK-K-PENLKIYESHVGICTQEQKCASYEDFVRVVIP 919 (1351)
Q Consensus 847 ~~dPya~~v~~~~~-~~~~~d~~~~~p~~~~~~~w~----~~~p~-~-p~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp 919 (1351)
+.||||++...... .|.|.|. + +|.|+ +...+ + -++++|||+|||.|+.+ ..-+|.+++...||
T Consensus 102 ~~DP~a~~~~~~p~~aS~v~~~-----~---~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~-~~~~~~e~a~~llp 172 (628)
T COG0296 102 KADPYARRQEVGPHTASQVVDL-----P---DYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD-RFLGYFELAIELLP 172 (628)
T ss_pred ccCchhhccCCCCCCcceecCC-----C---CcccccccccccccCCCCCCceEEEEEeeeccCC-CCcCHHHHHHHHhH
Confidence 99999999876433 4666665 1 24555 33322 2 27999999999999985 55556777777889
Q ss_pred ceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcceeee
Q psy9001 920 RIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVV 999 (1351)
Q Consensus 920 ~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~ 999 (1351)
+||+|| |+ .+|||- +.++.+
T Consensus 173 Yl~elG-~T---------------~IELMP------------v~e~p~-------------------------------- 192 (628)
T COG0296 173 YLKELG-IT---------------HIELMP------------VAEHPG-------------------------------- 192 (628)
T ss_pred HHHHhC-CC---------------EEEEcc------------cccCCC--------------------------------
Confidence 999888 33 456661 111111
Q ss_pred cccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCcccc
Q psy9001 1000 RNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH 1078 (1351)
Q Consensus 1000 ~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~ 1078 (1351)
..++|| .+-||++.++|||++|||+||++||++||.||||+|+||++++. .++..||++..+.+.
T Consensus 193 -------------~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~-~~L~~fdg~~~~e~~ 258 (628)
T COG0296 193 -------------DRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDG-NYLARFDGTFLYEHE 258 (628)
T ss_pred -------------CCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCc-chhhhcCCccccccC
Confidence 124677 67789999999999999999999999999999999999999976 789999998776666
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHH
Q psy9001 1079 DGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIY 1158 (1351)
Q Consensus 1079 ~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~f 1158 (1351)
...++.++.|+...+|+++++||+||++++.||+++|||||||+|||.+|++.+..+..+.+ ..+.+|++.+.++++|
T Consensus 259 ~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~--~~n~~ggr~n~~a~ef 336 (628)
T COG0296 259 DPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEW--VPNEYGGRENLEAAEF 336 (628)
T ss_pred CcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcc--cccccCCcccHHHHHH
Confidence 66688899999988999999999999999999999999999999999999999877766653 5677888889999999
Q ss_pred HHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccC--CCCCCC
Q psy9001 1159 LMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSD--CSHFGG 1236 (1351)
Q Consensus 1159 l~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d--~~~~~g 1236 (1351)
++..|+.|+...|.+++|+|+|++++..+.+...+|+||+|+|++ +.+.|.+.-. .+.++.
T Consensus 337 l~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nm-----------------g~m~D~~~y~~~~~~~r~ 399 (628)
T COG0296 337 LRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNM-----------------GWMHDTLFYFGKDPVYRK 399 (628)
T ss_pred hhhhhhhhcccCCCceeeeeeccCCCCceeeecccccchhhhhhh-----------------hhHhhHHHhcccCccccc
Confidence 999999999999999999999999999999999999999999988 2334333100 011111
Q ss_pred ccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCC--cC--Ccccc--cccCCHHHHHHHHHHHHccC
Q psy9001 1237 FNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREE--RN--NENNM--KRYIQTESNMNGFGIQTLPT 1310 (1351)
Q Consensus 1237 f~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~--rn--~~~r~--~~~~~~~~~r~A~allltsp 1310 (1351)
+.. ++......|.++.. +.++.|||+. ++ .+.|+ ....+.+.+|+++++++++|
T Consensus 400 ~~h---------------~~~tf~~~y~~se~-----~~l~~sHDevvhGk~sl~~rm~g~~~~~~a~lr~~~a~~~~~P 459 (628)
T COG0296 400 YHH---------------GELTFGLLYAFSEN-----VVLPLSHDEVVHGKRSLGERMPGDAWQKFANLRALAAYMWLHP 459 (628)
T ss_pred ccc---------------CCCcccccccccee-----EeccccccceeecccchhccCCcchhhhHHHHHHHHHHHHhCC
Confidence 111 11112233556666 8899999998 55 56666 66677799999999999999
Q ss_pred CccEEEeecc
Q psy9001 1311 QSPLYLVAKI 1320 (1351)
Q Consensus 1311 GiP~If~g~~ 1320 (1351)
|+|||||||.
T Consensus 460 gk~LLFMG~E 469 (628)
T COG0296 460 GKPLLFMGEE 469 (628)
T ss_pred Cceeeecchh
Confidence 9999999953
|
|
| >TIGR02104 pulA_typeI pullulanase, type I | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-56 Score=552.31 Aligned_cols=458 Identities=18% Similarity=0.220 Sum_probs=307.2
Q ss_pred cccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccccc
Q psy9001 696 KYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKL 775 (1351)
Q Consensus 696 ~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1351)
.+|+++.+++ ++|++|||+|++|+|++|++|.
T Consensus 11 ~lG~~~~~~~-~~F~vwaP~a~~V~l~~~~~~~----------------------------------------------- 42 (605)
T TIGR02104 11 ELGAVYTPEK-TVFRVWAPTATEVELLLYKSGE----------------------------------------------- 42 (605)
T ss_pred CCccEEECCe-eEEEEECCCCCEEEEEEEcCCC-----------------------------------------------
Confidence 7999998777 9999999999999999964310
Q ss_pred ccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEE
Q psy9001 776 LERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATY 854 (1351)
Q Consensus 776 ~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~ 854 (1351)
...| ...++|.+ ..|+| ++.|++...| ..|+|+|+.. | .+..++||||++
T Consensus 43 -~~~~---~~~~~m~~~~~gvw--------------~~~i~~~~~g-------~~Y~y~v~~~-~---~~~~~~DPya~~ 93 (605)
T TIGR02104 43 -DGEP---YKVVKMKRGENGVW--------------SAVLEGDLHG-------YFYTYQVCIN-G---KWRETVDPYAKA 93 (605)
T ss_pred -CCcc---ceEEecccCCCCEE--------------EEEECCCCCC-------CEEEEEEEcC-C---CeEEEcCCCcce
Confidence 0001 12467855 58999 8888876555 6779999864 4 367899999999
Q ss_pred EecCCCCCeeeeeeeeCCCCCCCCccccCC-CC--CCCCceEEEeecCCcccCCC-----cccccccccccccceeccCC
Q psy9001 855 VTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-PK--KPENLKIYESHVGICTQEQK-----CASYEDFVRVVIPRIVKQGD 926 (1351)
Q Consensus 855 v~~~~~~~~~~d~~~~~p~~~~~~~w~~~~-p~--~p~d~iIYE~HV~~~s~~~~-----~gty~~f~~~~lp~ik~lG~ 926 (1351)
++.++.+++|+|...++| ++|+.++ ++ .++++||||+|||+||.++. .|||.++++.-. ..
T Consensus 94 ~~~~~~~s~v~d~~~~~~-----~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~------~~ 162 (605)
T TIGR02104 94 VTVNGKRGAVIDLERTNP-----EGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGT------KG 162 (605)
T ss_pred eccCCCcEEEEcccccCc-----cCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceeeeeccCc------cc
Confidence 999988899998865543 5788775 32 55899999999999997653 688888876410 01
Q ss_pred CcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCC
Q psy9001 927 FNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHL 1006 (1351)
Q Consensus 927 fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~ 1006 (1351)
++++..++++|+++|++.++|+- .+.+ ... ....+
T Consensus 163 ~~g~~~~LdyL~~LGvt~I~L~P-------i~~~------------~~~------------------------~~~~~-- 197 (605)
T TIGR02104 163 PNGVSTGLDYLKELGVTHVQLLP-------VFDF------------AGV------------------------DEEDP-- 197 (605)
T ss_pred cccchhHHHHHHHcCCCEEEeCC-------cccc------------ccc------------------------ccccC--
Confidence 23455566777777776555551 1110 000 00000
Q ss_pred CCCCCCcccccc-ccccccccCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCC-cc
Q psy9001 1007 LDRFGTPEQLKY-LVDECHKAGLFGT--------PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQA-CF 1076 (1351)
Q Consensus 1007 ~~~~~sp~~hgY-~~Dy~~idp~yGt--------~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~-~y 1076 (1351)
....+||| .+|||+++++||+ ++|||+||++||++||+||||||+|||+..... .|++..+ +|
T Consensus 198 ----~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~---~f~~~~~~~~ 270 (605)
T TIGR02104 198 ----NNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREES---PFEKTVPGYY 270 (605)
T ss_pred ----CCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCCC---cccCCCCCee
Confidence 01124889 8899999988887 599999999999999999999999999864322 3444433 45
Q ss_pred ccCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChh
Q psy9001 1077 FHDGPRGTHPLW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD 1154 (1351)
Q Consensus 1077 f~~~~~g~~~~w--~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~ 1154 (1351)
|+.+..+...++ +++++|+++|+||++|+++++||++||||||||||+|.++
T Consensus 271 ~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~-------------------------- 324 (605)
T TIGR02104 271 YRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIH-------------------------- 324 (605)
T ss_pred EEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcC--------------------------
Confidence 554555544433 5679999999999999999999999999999999999866
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCC--C
Q psy9001 1155 ALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDC--S 1232 (1351)
Q Consensus 1155 ~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~--~ 1232 (1351)
...||+++++.|++..|++++|||.|...+.+........ . . .. .++ .++.||+.||+++.... .
T Consensus 325 ~~~~~~~~~~~~~~~~p~~~ligE~w~~~~~~~~~~~~~~---~----~-~~----~~~-~~~~~n~~~rd~i~~~~~~~ 391 (605)
T TIGR02104 325 DIETMNEIRKALNKIDPNILLYGEGWDLGTPLPPEQKATK---A----N-AY----QMP-GIAFFNDEFRDALKGSVFHL 391 (605)
T ss_pred CHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcchhhhhhh---h----c-cC----CCC-ceEEECCcchhhhcCCcccc
Confidence 3568899999999999999999999876543322100000 0 0 00 012 24679999999995321 0
Q ss_pred CCCCccccCCCcccccccCCcccc-cCccccc--cCCCCccceeeecccCCCCCcCCccccccc-------CCHHHHHHH
Q psy9001 1233 HFGGFNRLDPGTVYETYPEPWNNR-RNSIKLY--LPTRTGIIDEVNLLNNVREERNNENNMKRY-------IQTESNMNG 1302 (1351)
Q Consensus 1233 ~~~gf~r~~~~~~~~~~~~~~~~r-~~s~~~y--~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~-------~~~~~~r~A 1302 (1351)
.-++|.++......... .+ ..+...+ ......+...|||++|||+.+.. .++... .+.+++|+|
T Consensus 392 ~~~~f~~g~~~~~~~l~-----~~l~~~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~-d~l~~~~~~~~~~~~~~r~rla 465 (605)
T TIGR02104 392 KKKGFVSGNPGTEETVK-----KGILGSIELDAVKPSALDPSQSINYVECHDNHTLW-DKLSLANPDETEEQLKKRQKLA 465 (605)
T ss_pred ccCceecCCCCcHHHHH-----hheeCChhhcccccccCChhheEEEEEecCCCCHH-HHHHhhCCCCCHHHHHHHHHHH
Confidence 11244443322111110 00 0111000 00111122239999999987642 122211 124678999
Q ss_pred HHHHHccCCccEEEee-cccCCCC------ccceeeccCCcce
Q psy9001 1303 FGIQTLPTQSPLYLVA-KIEKPCS------TREVVKAPLPFGV 1338 (1351)
Q Consensus 1303 ~allltspGiP~If~g-~~~~~~~------~~~~~~~p~~~~~ 1338 (1351)
++++||+||||||||| |+..... .....+++|+|.-
T Consensus 466 ~alllts~GiP~iy~GdE~g~s~~g~~n~y~~~d~~~~ldW~~ 508 (605)
T TIGR02104 466 TAILLLSQGIPFLHAGQEFMRTKQGDENSYNSPDSINQLDWDR 508 (605)
T ss_pred HHHHHHcCCCceeecchhhhccCCCCCCCccCCCcccccCccc
Confidence 9999999999999999 6655431 1235688999973
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases. |
| >TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=555.23 Aligned_cols=490 Identities=17% Similarity=0.181 Sum_probs=306.3
Q ss_pred cchhhHHHHhhhc-c---ccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCC
Q psy9001 683 SIGGIEKFTTSYN-K---YGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGN 758 (1351)
Q Consensus 683 ~~~~~~~f~~~y~-~---~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (1351)
.-|-|++.. .|. . +|+++++++ ++|++|||+|++|.|++|.+ .
T Consensus 111 ~~~~lD~~y-~y~~~~~~LGa~~~~~g-v~FrVWAPtA~~V~L~Ly~~-------------------------~------ 157 (898)
T TIGR02103 111 TAGVLDALY-AYAGPALSLGATLTDSG-VTFRLWAPTAQQVKLHIYSA-------------------------S------ 157 (898)
T ss_pred cchhhhHHh-hcCCCCCCCCcEEeCCc-EEEEEECCCCCEEEEEEEcC-------------------------C------
Confidence 345565543 232 3 999998765 99999999999999999532 0
Q ss_pred CCCCCCCCcccccccccccCCCCCCcccccccc--ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEe
Q psy9001 759 SQSVDPASIHIPELHKLLERDPYLNPYQYEMKR--RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKR 836 (1351)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~--~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 836 (1351)
.+ ....++|++ ..|+| +++++++.+| ..|+|+|+.
T Consensus 158 -------------------~~---~~~~~~M~~~~~~GVW--------------sv~v~g~~~G-------~~Y~Y~V~v 194 (898)
T TIGR02103 158 -------------------KK---VETTLPMTRDSTSGVW--------------SAEGGSSWKG-------AYYRYEVTV 194 (898)
T ss_pred -------------------CC---ccceEeCccCCCCCEE--------------EEEECcCCCC-------CEeEEEEEE
Confidence 00 113467855 48999 8999888777 456888874
Q ss_pred cC---CceeeEEEecCcceEEEecCCCCCeeeeeee--eCCCCCCCCccccCC---CC--CCCCceEEEeecCCcccC--
Q psy9001 837 RY---GLMVNFLEQLSPWATYVTEPPVVGHAYEQRI--WNPKPQDKHKWTSSK---PK--KPENLKIYESHVGICTQE-- 904 (1351)
Q Consensus 837 ~~---~~~~~~~~~~dPya~~v~~~~~~~~~~d~~~--~~p~~~~~~~w~~~~---p~--~p~d~iIYE~HV~~~s~~-- 904 (1351)
.. | .+++.+++||||++++.|+.+|+|+|... |.| .+|+..+ |+ .+++++|||+|||+||.+
T Consensus 195 ~~p~~G-~v~~~~v~DPYA~als~n~~~S~VvDl~~~~~~p-----~~W~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~ 268 (898)
T TIGR02103 195 YHPSTG-KVETYLVTDPYSVSLSANSEYSQVVDLNDPALKP-----EGWDALAMPKPQLASFADMVLYELHIRDFSANDE 268 (898)
T ss_pred ecCCCC-eECCeEEeCcCcceEcCCCCCeEEeCCccccCCC-----cchhhcccccCCcCCCcccEEEEEeccccccCCC
Confidence 32 3 12357899999999999999999999753 344 4798765 32 469999999999999963
Q ss_pred ----CCcccccccccc---cccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccc-cCccceecCC----c
Q psy9001 905 ----QKCASYEDFVRV---VIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWN-REEFAYKKLD----F 972 (1351)
Q Consensus 905 ----~~~gty~~f~~~---~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~-~~~~~y~~~d----~ 972 (1351)
..+|||.+|++. .++|||+ |+++|++.+||| +.|.|. +++..-...+ +
T Consensus 269 s~~~~~rGtYla~tE~~t~gi~hLk~-------------L~eLGVThVeLL-------Pv~df~tvdE~~~~~~~~~~~~ 328 (898)
T TIGR02103 269 SVPAELRGKYLAFTAADSAGVQHLKK-------------LADAGVTHLHLL-------PTFDIATVNEEKEKVADIQQPF 328 (898)
T ss_pred CCCcCcCceeeehhccchhhhHHHHH-------------HHhCCCcEEEEc-------ChhhcCccccccccccccccch
Confidence 357999999875 2445543 334456667777 456662 3432211000 0
Q ss_pred cceeeecCCCCCCCccccc-cCcc-eeee-cc-----cCCCCCCCC-CCcccccc-ccccccccCCCCC-------HHHH
Q psy9001 973 GKWELVLPPNPDGSCKLTH-LSQV-KLVV-RN-----QHGHLLDRF-GTPEQLKY-LVDECHKAGLFGT-------PEQL 1035 (1351)
Q Consensus 973 gy~~~~~pp~~~~~~~i~d-~~~~-~l~~-~~-----~~G~~~~~~-~sp~~hgY-~~Dy~~idp~yGt-------~edf 1035 (1351)
+--. .++|.... +...+ .... .+.. .. ..+.....- ...-++|| ...|++++++|++ +.||
T Consensus 329 ~~l~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Ef 406 (898)
T TIGR02103 329 SKLC-ELNPDSKS-SEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEF 406 (898)
T ss_pred hhhh-cccccccc-ccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHH
Confidence 0000 01111100 00000 0000 0000 00 000000000 01124677 6777777777766 5799
Q ss_pred HHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCC-ccccCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHH
Q psy9001 1036 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQA-CFFHDGPRGTHPLW-DSRLFNYSEIEVLRFLLSNLRWYLE 1113 (1351)
Q Consensus 1036 K~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~-~yf~~~~~g~~~~w-~~~dlN~~np~Vr~~lid~l~yWl~ 1113 (1351)
|+||++||++||+||||||+|||+..+......++...+ +|++.+..|...++ |+.++|.+|++||++|+++++||++
T Consensus 407 k~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~~ 486 (898)
T TIGR02103 407 REMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVWAK 486 (898)
T ss_pred HHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876433333554444 44444444544443 5678999999999999999999999
Q ss_pred HhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcc-ccccc
Q psy9001 1114 EYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASC-RPVTE 1192 (1351)
Q Consensus 1114 eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~-~p~~~ 1192 (1351)
||||||||||+|+++ +..||++++++|++++|+++++||.|....... +....
T Consensus 487 ey~VDGFRfDlm~~~--------------------------~~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~ 540 (898)
T TIGR02103 487 DYKVDGFRFDLMGHH--------------------------PKAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFIN 540 (898)
T ss_pred HcCCCEEEEechhhC--------------------------CHHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhh
Confidence 999999999999988 677899999999999999999999985332221 11111
Q ss_pred CCcccccccccccccccccccccccccCchhHhhhccCC---C-----CCCCccccCCCcccc---c-------------
Q psy9001 1193 GGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDC---S-----HFGGFNRLDPGTVYE---T------------- 1248 (1351)
Q Consensus 1193 gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~---~-----~~~gf~r~~~~~~~~---~------------- 1248 (1351)
+. +.+. .-+ .++.||+.+||++++.. . .-+||..+....... .
T Consensus 541 a~-----~~n~-------~~~-~ig~FnD~~RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d 607 (898)
T TIGR02103 541 AT-----QLNL-------AGT-GIGTFSDRLRDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLAD 607 (898)
T ss_pred hh-----cccc-------CCC-CeEEeccchhhHhcCCCccccccccccCcceecCcccCCcccccccchhhhhhhhhHH
Confidence 11 1111 011 35789999999998653 1 234554442110000 0
Q ss_pred -----ccC--------Ccccc--cCccccc---------cCCCCccceeeecccCCCCCcCCcccccccC-------CHH
Q psy9001 1249 -----YPE--------PWNNR--RNSIKLY---------LPTRTGIIDEVNLLNNVREERNNENNMKRYI-------QTE 1297 (1351)
Q Consensus 1249 -----~~~--------~~~~r--~~s~~~y---------~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~-------~~~ 1297 (1351)
... ...+. .++...| .|.++ |||+++||+.+.+..-..+.. +.+
T Consensus 608 ~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~ya~~P~e~-----inYvs~HDN~TL~D~l~~~~~~~~~~~~r~r 682 (898)
T TIGR02103 608 LTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAGYAADPTET-----INYVSKHDNQTLWDAISYKAAAETPSAERVR 682 (898)
T ss_pred HHHHhhcCccccccccccccccccccccccCcCccccccCHHHh-----eeeeeccCCccHHHHHHhhCCCCCCHHHHHH
Confidence 000 00000 0111111 13333 999999999876433222211 236
Q ss_pred HHHHHHHHHHccCCccEEEeecc
Q psy9001 1298 SNMNGFGIQTLPTQSPLYLVAKI 1320 (1351)
Q Consensus 1298 ~~r~A~allltspGiP~If~g~~ 1320 (1351)
+.++|++++||+||||||+||+.
T Consensus 683 ~~~la~a~~~lsQGipF~haG~E 705 (898)
T TIGR02103 683 MQAVSLSTVMLGQGIPFFHAGSE 705 (898)
T ss_pred HHHHHHHHHHHhChhhHHhcchH
Confidence 67899999999999999999943
|
Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102). |
| >PRK03705 glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-55 Score=543.59 Aligned_cols=452 Identities=19% Similarity=0.242 Sum_probs=295.6
Q ss_pred hccccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccc
Q psy9001 694 YNKYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELH 773 (1351)
Q Consensus 694 y~~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (1351)
...+|+++++++ +.|++|||+|++|+|++|++. .
T Consensus 9 ~~pLGa~~~~~g-~~F~vwAP~A~~V~L~l~~~~-------------------------~-------------------- 42 (658)
T PRK03705 9 PTPLGAHYDGQG-VNFTLFSAHAERVELCVFDEN-------------------------G-------------------- 42 (658)
T ss_pred CCCcceEEeCCC-EEEEEECCCCCEEEEEEEcCC-------------------------C--------------------
Confidence 456999998766 999999999999999995320 0
Q ss_pred ccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEec----CCce-eeEEEe
Q psy9001 774 KLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRR----YGLM-VNFLEQ 847 (1351)
Q Consensus 774 ~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~----~~~~-~~~~~~ 847 (1351)
....++|++ +.|+| ++.++++..| ..|.|+|... .|.. ......
T Consensus 43 ---------~~~~~~m~~~~~gvW--------------~~~v~~~~~G-------~~Y~yrv~g~~~p~~g~~~~~~~~~ 92 (658)
T PRK03705 43 ---------QEQRYDLPARSGDIW--------------HGYLPGARPG-------LRYGYRVHGPWQPAQGHRFNPAKLL 92 (658)
T ss_pred ---------CeeeEeeeeccCCEE--------------EEEECCCCCC-------CEEEEEEccccCcccCcccCCCcEe
Confidence 001245744 58999 8888887666 5679999742 1200 013568
Q ss_pred cCcceEEEecCCCCCeee----------eeeeeCCCC---CCCCccccCCCC-CC-CCceEEEeecCCccc-CC-----C
Q psy9001 848 LSPWATYVTEPPVVGHAY----------EQRIWNPKP---QDKHKWTSSKPK-KP-ENLKIYESHVGICTQ-EQ-----K 906 (1351)
Q Consensus 848 ~dPya~~v~~~~~~~~~~----------d~~~~~p~~---~~~~~w~~~~p~-~p-~d~iIYE~HV~~~s~-~~-----~ 906 (1351)
+|||||+++.+...+..+ +.....|.. +++|+|++++++ .| +++||||+|||+||. ++ .
T Consensus 93 ~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~W~~~~~p~~~~~~~vIYE~hvr~ft~~~~~~~~~~ 172 (658)
T PRK03705 93 IDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVDDHYDWEDDAPPRTPWGSTVIYEAHVRGLTYLHPEIPVEI 172 (658)
T ss_pred cCcCceEEccccccCccccccccCCccccccccCCceEEecCCCCCCCCCCCCCCccccEEEEEehhhhcccCCCCCccc
Confidence 999999998642111110 000011111 246899988743 33 899999999999996 32 3
Q ss_pred cccccccccc-cccceeccCCCcccccccccccccCCceEEEe-cCCCCCCCCcccccCccceecCCccceeeecCCCCC
Q psy9001 907 CASYEDFVRV-VIPRIVKQGDFNNWNREEFAYKKLDFGKWELV-LPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPD 984 (1351)
Q Consensus 907 ~gty~~f~~~-~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~-ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~ 984 (1351)
.|||.++++. .|++||+|| ++.++|+ | +.+.....
T Consensus 173 ~Gtf~g~~~~~~LdYLk~LG----------------vt~I~L~Pv--------~~~~~~~~------------------- 209 (658)
T PRK03705 173 RGTYAALGHPVMIAYLKQLG----------------ITALELLPV--------AQFASEPR------------------- 209 (658)
T ss_pred cccHHHhhcccchHHHHHcC----------------CCEEEecCc--------ccCCCccc-------------------
Confidence 6888888763 477777777 3223333 2 11100000
Q ss_pred CCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCH-----HHHHHHHHHHHHcCCEEEEEeecccc
Q psy9001 985 GSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTP-----EQLKYLVDECHKAGLYVLLDVVHSHA 1058 (1351)
Q Consensus 985 ~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~-----edfK~LV~~aH~~GI~VILDVV~NHt 1058 (1351)
... .....+||| ++|||+++|+|||. +|||+||++||++||+||||||+|||
T Consensus 210 ---------------~~~-------~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt 267 (658)
T PRK03705 210 ---------------LQR-------MGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHS 267 (658)
T ss_pred ---------------ccc-------cccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCc
Confidence 000 001246899 99999999999984 79999999999999999999999999
Q ss_pred cCCcccc-CcCCCCCC-CccccCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCC
Q psy9001 1059 SKNVLDG-LNEFDGTQ-ACFFHDGPRGTHPLW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHG 1134 (1351)
Q Consensus 1059 s~~~~~~-l~~~dg~~-~~yf~~~~~g~~~~w--~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g 1134 (1351)
+.....+ ...+++.+ .+||+....+.+.+| |+++||+++|+||++|+++++||++||||||||||+|.+|.+.
T Consensus 268 ~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~--- 344 (658)
T PRK03705 268 AELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRT--- 344 (658)
T ss_pred cCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcC---
Confidence 9753222 12233332 356655556666677 5689999999999999999999999999999999999988321
Q ss_pred CCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccc
Q psy9001 1135 CGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPR 1214 (1351)
Q Consensus 1135 ~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~ 1214 (1351)
..|+ . ...+++.+.. ..+.|++++|||.|...+. + ++.+. |+.
T Consensus 345 --~~~~------------~-~~~~~~ai~~--d~vl~~~~ligE~Wd~~~~--------~----~~~g~--------~~~ 387 (658)
T PRK03705 345 --PEFR------------Q-DAPLFTAIQN--DPVLSQVKLIAEPWDIGPG--------G----YQVGN--------FPP 387 (658)
T ss_pred --cccc------------h-hhHHHHHHhh--CccccceEEEEecccCCCC--------h----hhhcC--------CCc
Confidence 1221 1 1123333322 2467899999998743211 1 33333 444
Q ss_pred cccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccc-cCccccccCCCCccceeeecccCCCCCcCCc------
Q psy9001 1215 VGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR-RNSIKLYLPTRTGIIDEVNLLNNVREERNNE------ 1287 (1351)
Q Consensus 1215 ~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r-~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~------ 1287 (1351)
.+++||+.||+++ ++|.+.++....... .| .++..+|....+.+..+|||+++||..+...
T Consensus 388 ~~~~~Nd~fRd~i-------r~f~~~~~~~~~~~~-----~~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL~D~~~~~~ 455 (658)
T PRK03705 388 PFAEWNDHFRDAA-------RRFWLHGDLPLGEFA-----GRFAASSDVFKRNGRLPSASINLVTAHDGFTLRDCVCFNQ 455 (658)
T ss_pred ceEEEchHHHHHH-------HHHHccCCCcHHHHH-----HHHhcchhhccccCCCCCeEEEEEEeCCCccHHHHHhhhc
Confidence 5789999999999 566655444322221 22 3344445444344555599999999643310
Q ss_pred -------c--------c--------------ccccCCHHHHHHHHHHHHccCCccEEEee-cccCC--CCccce----ee
Q psy9001 1288 -------N--------N--------------MKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKP--CSTREV----VK 1331 (1351)
Q Consensus 1288 -------~--------r--------------~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~--~~~~~~----~~ 1331 (1351)
+ + .....+.++.|+|++++|||||||||++| |+..+ |.+-.- -.
T Consensus 456 ~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE~grtq~G~nN~y~~~~~i 535 (658)
T PRK03705 456 KHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNAL 535 (658)
T ss_pred cchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHHhccCCCCCCCCccCCCCc
Confidence 0 0 01111346889999999999999999999 77776 544332 34
Q ss_pred ccCCcce
Q psy9001 1332 APLPFGV 1338 (1351)
Q Consensus 1332 ~p~~~~~ 1338 (1351)
|-|+|+-
T Consensus 536 ~~~dW~~ 542 (658)
T PRK03705 536 TWLDWSQ 542 (658)
T ss_pred cccccch
Confidence 6799984
|
|
| >TIGR02104 pulA_typeI pullulanase, type I | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-54 Score=533.98 Aligned_cols=310 Identities=18% Similarity=0.241 Sum_probs=237.6
Q ss_pred ccccccCceeEEE-----EEEEEEEeecCCCCcc----ccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCc
Q psy9001 61 LVDECHKAGLLCF-----MHVVCAAGDFNNWNRE----EFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGH 131 (1351)
Q Consensus 61 l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~~----~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~ 131 (1351)
++......||+|+ |++|+|++ |++|+.. .++|.+..+|+|+++||+...| .+|+|+|+. +|.
T Consensus 12 lG~~~~~~~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g-------~~Y~y~v~~-~~~ 82 (605)
T TIGR02104 12 LGAVYTPEKTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHG-------YFYTYQVCI-NGK 82 (605)
T ss_pred CccEEECCeeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCCCC-------CEEEEEEEc-CCC
Confidence 4555567799999 99999996 8888643 6799988899999999987655 699999996 465
Q ss_pred eeeccCCcceEEecCCCCccceeeeeeCCCCCCCCccCCCC-C--CCCCCceEEEEecCCccCCC-----CCCCHHHHHH
Q psy9001 132 LLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-P--KKPDNLKIYESHVGICTQEQ-----KCASYEDFVR 203 (1351)
Q Consensus 132 ~~~~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~-p--~~~~~~vIYE~hvr~ft~~~-----~~G~~~gi~~ 203 (1351)
...++||||+++..++..|++++...+ ++++|..++ + +.+++++|||+|||+||... .+|+|.++++
T Consensus 83 ~~~~~DPya~~~~~~~~~s~v~d~~~~-----~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e 157 (605)
T TIGR02104 83 WRETVDPYAKAVTVNGKRGAVIDLERT-----NPEGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTE 157 (605)
T ss_pred eEEEcCCCcceeccCCCcEEEEccccc-----CccCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceeeeec
Confidence 568999999999887766666653322 345788764 3 35689999999999998432 3799999887
Q ss_pred h----------hhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccc
Q psy9001 204 V----------VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMD 273 (1351)
Q Consensus 204 ~----------~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~ 273 (1351)
+ .|||||+||||+ |||||||++.. +.+. .+ ...++|||++++||
T Consensus 158 ~~~~~~~g~~~~LdyL~~LGvt~----I~L~Pi~~~~~--------------~~~~----~~-~~~~~wGY~~~~y~--- 211 (605)
T TIGR02104 158 TGTKGPNGVSTGLDYLKELGVTH----VQLLPVFDFAG--------------VDEE----DP-NNAYNWGYDPLNYN--- 211 (605)
T ss_pred cCccccccchhHHHHHHHcCCCE----EEeCCcccccc--------------cccc----cC-CCCCCCCCCCccCC---
Confidence 5 499999999999 99999776321 0010 01 12346999999999
Q ss_pred hhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCC--CHHHHHHHHHHHHHcCCEEEEEeeccccccCCcC
Q psy9001 274 KEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 351 (1351)
Q Consensus 274 ~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G--~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~ 351 (1351)
+|+++|+++ |.+| +++|||+||++||++||+||||||+|||+...
T Consensus 212 ------------------~~~~~y~~~-------------p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~-- 258 (605)
T TIGR02104 212 ------------------VPEGSYSTN-------------PYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSRE-- 258 (605)
T ss_pred ------------------CcChhhhcC-------------CCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCC--
Confidence 777666653 4444 47999999999999999999999999998642
Q ss_pred CcccCCCCCCcCc-ccCCCCCCCCCC--CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCC
Q psy9001 352 GLNEFDGTQACFF-HDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSG 428 (1351)
Q Consensus 352 ~~~~f~g~~~~yy-~~~~~~~~~~w~--~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~ 428 (1351)
...|++..+.|| +.++.+.+.++. ++++|+++|+||++|+++++||++||||||||||+|..+
T Consensus 259 -~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~------------- 324 (605)
T TIGR02104 259 -ESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIH------------- 324 (605)
T ss_pred -CCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcC-------------
Confidence 235677665444 444445444332 578999999999999999999999999999999999766
Q ss_pred CccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q psy9001 429 HYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 470 (1351)
Q Consensus 429 ~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~ 470 (1351)
..+||+++++++++.+|++++|||.|...
T Consensus 325 -------------~~~~~~~~~~~~~~~~p~~~ligE~w~~~ 353 (605)
T TIGR02104 325 -------------DIETMNEIRKALNKIDPNILLYGEGWDLG 353 (605)
T ss_pred -------------CHHHHHHHHHHHHhhCCCeEEEEccCCCC
Confidence 23577777777777777888888876543
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases. |
| >PLN02877 alpha-amylase/limit dextrinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-54 Score=542.86 Aligned_cols=466 Identities=18% Similarity=0.169 Sum_probs=294.8
Q ss_pred cccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccccc
Q psy9001 696 KYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKL 775 (1351)
Q Consensus 696 ~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1351)
.+|+++++++ ++|++|||+|++|.|++|+++.
T Consensus 214 ~LGA~~~~~g-~~F~VWAPtA~~V~L~lyd~~~----------------------------------------------- 245 (970)
T PLN02877 214 PLGAHFSKDA-VSLYLWAPTAQAVSLCLYDDPR----------------------------------------------- 245 (970)
T ss_pred CCcceEecCC-EEEEEECCCCCEEEEEEecCCC-----------------------------------------------
Confidence 7999998776 9999999999999999963300
Q ss_pred ccCCCCCCccccccccccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecC---CceeeEEEecCcce
Q psy9001 776 LERDPYLNPYQYEMKRRYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRY---GLMVNFLEQLSPWA 852 (1351)
Q Consensus 776 ~~~~~~~~~~~~~m~~~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~---~~~~~~~~~~dPya 852 (1351)
...| ...++|+++.|+| +++++++++| ..|+|+|+... | .+++.+++||||
T Consensus 246 -~~~~---~~~~~m~~~~GVW--------------sv~v~~~~~G-------~~Y~Y~V~v~~p~~g-~~~~~~v~DPYA 299 (970)
T PLN02877 246 -GKEP---LEIVQLKESNGVW--------------SVEGPKSWEG-------CYYVYEVSVYHPSTG-KVETCYANDPYA 299 (970)
T ss_pred -Cccc---eEEecccCCCCEE--------------EEEeccCCCC-------CeeEEEEeecccCCC-cccccccCCccc
Confidence 0000 1235677669999 8999988777 45688887421 3 123567899999
Q ss_pred EEEecCCCCCeeeeeee--eCCCCCCCCcccc---CCCC--CCCCceEEEeecCCcccC------CCcccccccccc---
Q psy9001 853 TYVTEPPVVGHAYEQRI--WNPKPQDKHKWTS---SKPK--KPENLKIYESHVGICTQE------QKCASYEDFVRV--- 916 (1351)
Q Consensus 853 ~~v~~~~~~~~~~d~~~--~~p~~~~~~~w~~---~~p~--~p~d~iIYE~HV~~~s~~------~~~gty~~f~~~--- 916 (1351)
++++.|+.+++++|... |+|. +|+. ++|+ .++|+||||+|||+||.+ ..+|||.+|++.
T Consensus 300 ~als~ng~~S~vvDl~~~~~~p~-----gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~ 374 (970)
T PLN02877 300 RGLSADGRRTLLVDLDSDDLKPE-----GWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSA 374 (970)
T ss_pred eEEecCCCceEEECCccccCCCh-----hhhhcccccCccCCCcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhh
Confidence 99999999999998753 4453 7986 2343 468999999999999974 246999999875
Q ss_pred cccceeccCCCcccccccccccccCCceEEEecCCCCCCCCccc-ccCccceecCCccc-eeeecCCCCCCCccccccCc
Q psy9001 917 VIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNW-NREEFAYKKLDFGK-WELVLPPNPDGSCKLTHLSQ 994 (1351)
Q Consensus 917 ~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~-~~~~~~y~~~d~gy-~~~~~pp~~~~~~~i~d~~~ 994 (1351)
.++|||+ |+++|++.+||| +.|.| .+++..-...+... .-...|+.+.
T Consensus 375 gi~hLk~-------------LkelGVThVeLL-------PvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~---------- 424 (970)
T PLN02877 375 GVLHLKK-------------LADAGLTHVHLL-------PTFQFGSVDDEKENWKCVDPKELEKLPPDSE---------- 424 (970)
T ss_pred HHHHHHH-------------HHHcCCCEEEeC-------CccccCCcccccccccccccchhccccccch----------
Confidence 2444443 333456666776 34555 23321110000000 0000111100
Q ss_pred ceeeecccCCCCCCCC-CCcccccc-ccccccccCCCCC-------HHHHHHHHHHHHHcCCEEEEEeecccccCCcccc
Q psy9001 995 VKLVVRNQHGHLLDRF-GTPEQLKY-LVDECHKAGLFGT-------PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG 1065 (1351)
Q Consensus 995 ~~l~~~~~~G~~~~~~-~sp~~hgY-~~Dy~~idp~yGt-------~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~ 1065 (1351)
.....+.... ...-++|| ...|++++++|++ +.|||+||++||++||+||||||||||+..+...
T Consensus 425 ------~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~ 498 (970)
T PLN02877 425 ------EQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFD 498 (970)
T ss_pred ------hhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcc
Confidence 0000000000 01135677 6777777777776 5799999999999999999999999998765322
Q ss_pred -CcCCCCCCC-ccccCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCC
Q psy9001 1066 -LNEFDGTQA-CFFHDGPRGTHPLW-DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGH 1142 (1351)
Q Consensus 1066 -l~~~dg~~~-~yf~~~~~g~~~~w-~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~ 1142 (1351)
...++...+ +||+.++.|...+. |+++++.+++|||++|+|+++||++||||||||||+|+++
T Consensus 499 ~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i-------------- 564 (970)
T PLN02877 499 ENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHL-------------- 564 (970)
T ss_pred hhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccc--------------
Confidence 234555444 56666666765555 6778899999999999999999999999999999999988
Q ss_pred cccccCCcCChhHHHHHHHHHHHHHhhC--------CCeEEEEccCCCCCCcccccccCCcccc-ccccccccccccccc
Q psy9001 1143 YDEYFGLNVDTDALIYLMVANKFLHDKY--------PEIITIAEDVSGMPASCRPVTEGGTGFD-YRLGQYLHQHSILFP 1213 (1351)
Q Consensus 1143 ~~~~~g~~~d~~~~~fl~~~~~~l~~~~--------Pd~ilIaE~~~~~p~~~~p~~~gg~GFd-y~~~~~~h~~~~~f~ 1213 (1351)
....|+.++++|+++. |+++++||.|... .+. ....+-. .|.+.. -+
T Consensus 565 ------------~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~g-~~~----~~~~~~~A~q~n~~-------g~ 620 (970)
T PLN02877 565 ------------MKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDFG-EVA----KNGRGVNASQFNLA-------GT 620 (970)
T ss_pred ------------cHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCCC-Ccc----cccccccccccccC-------CC
Confidence 2234456666666663 8899999999522 111 1111000 111111 11
Q ss_pred ccccccCchhHhhhccCC----CCCCCccccCCC----c-----------------------ccccccCC---cccc--c
Q psy9001 1214 RVGVEQAGKYKVVLDSDC----SHFGGFNRLDPG----T-----------------------VYETYPEP---WNNR--R 1257 (1351)
Q Consensus 1214 ~~~~e~n~~~rd~l~~d~----~~~~gf~r~~~~----~-----------------------~~~~~~~~---~~~r--~ 1257 (1351)
.++.||+.+||++++.. ..-.||..+... + ........ ..+. .
T Consensus 621 -gIg~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~ 699 (970)
T PLN02877 621 -GIGSFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVK 699 (970)
T ss_pred -ceEEecchhHHHHcCCCCCCCcCCCceecccccCCcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccc
Confidence 35889999999998642 223455544210 0 00000000 0000 0
Q ss_pred Ccc--------ccc--cCCCCccceeeecccCCCCCcCCcccccccC-------CHHHHHHHHHHHHccCCccEEEeecc
Q psy9001 1258 NSI--------KLY--LPTRTGIIDEVNLLNNVREERNNENNMKRYI-------QTESNMNGFGIQTLPTQSPLYLVAKI 1320 (1351)
Q Consensus 1258 ~s~--------~~y--~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~-------~~~~~r~A~allltspGiP~If~g~~ 1320 (1351)
++. ..| .|.++ |||++|||+.+.+..-..+.. +.++.++|++|++|+||||||++|+.
T Consensus 700 g~~~~~y~~~~~~ya~~P~q~-----InYvs~HDN~TL~D~l~~~~~~~~s~~~r~r~~~la~aiv~lsQGipF~haG~E 774 (970)
T PLN02877 700 GSEVLTHDGKPVAYASSPTET-----INYVSAHDNETLFDIISLKTPMEISVDERCRINHLATSIIALSQGIPFFHAGDE 774 (970)
T ss_pred cccccccCCcccccccCHHHh-----eeeeeccCCchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchh
Confidence 000 011 13333 999999999876443222211 23668899999999999999999943
|
|
| >TIGR02100 glgX_debranch glycogen debranching enzyme GlgX | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-54 Score=538.34 Aligned_cols=446 Identities=20% Similarity=0.270 Sum_probs=295.3
Q ss_pred hccccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccc
Q psy9001 694 YNKYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELH 773 (1351)
Q Consensus 694 y~~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (1351)
...+|+++++++ ++|++|||+|++|+|.+|++. .
T Consensus 4 ~~~LGa~~~~~g-~~F~vwap~A~~V~L~l~~~~-------------------------~-------------------- 37 (688)
T TIGR02100 4 PFPLGATWDGQG-VNFALFSANAEKVELCLFDAQ-------------------------G-------------------- 37 (688)
T ss_pred CcCCCeEEeCCc-EEEEEECCCCCEEEEEEEcCC-------------------------C--------------------
Confidence 346899998776 999999999999999985320 0
Q ss_pred ccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEec----CCcee-eEEEe
Q psy9001 774 KLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRR----YGLMV-NFLEQ 847 (1351)
Q Consensus 774 ~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~----~~~~~-~~~~~ 847 (1351)
.. ....++|.+ ..|+| +++|+++..| ..|+|+|... .|... ...+.
T Consensus 38 ----~~---~~~~~~m~~~~~gvW--------------~~~v~~~~~g-------~~Y~yrv~g~~~~~~g~~f~~~~~~ 89 (688)
T TIGR02100 38 ----EK---EEARLPLPERTDDIW--------------HGYLPGAQPG-------QLYGYRVHGPYDPENGHRFNPNKLL 89 (688)
T ss_pred ----Cc---eeeEEecccCCCCEE--------------EEEECCCCCC-------CEEEEEEeeeeCCCCCcccCcCcee
Confidence 00 012356754 58999 8889887776 5668999742 12100 23578
Q ss_pred cCcceEEEecCCC-----------------------------CCeeeeeeeeCCCCCCCCccccC-C-CCCC-CCceEEE
Q psy9001 848 LSPWATYVTEPPV-----------------------------VGHAYEQRIWNPKPQDKHKWTSS-K-PKKP-ENLKIYE 895 (1351)
Q Consensus 848 ~dPya~~v~~~~~-----------------------------~~~~~d~~~~~p~~~~~~~w~~~-~-p~~p-~d~iIYE 895 (1351)
+|||||+++.+.. +++|+| .+|+|+.+ . |..| +++||||
T Consensus 90 ~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d---------~~~~w~~~~~~p~~~~~d~iIYE 160 (688)
T TIGR02100 90 LDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVD---------PDFDWGGDEQRPRTPWEDTIIYE 160 (688)
T ss_pred cCcCceeecCCCcccccccccccccccccccccccccccccCceEEeC---------CCCCCCCcccCCCCCccccEEEE
Confidence 9999999987632 223332 24789877 3 4433 8999999
Q ss_pred eecCCcccC------CCcccccccccc-cccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCcccee
Q psy9001 896 SHVGICTQE------QKCASYEDFVRV-VIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYK 968 (1351)
Q Consensus 896 ~HV~~~s~~------~~~gty~~f~~~-~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~ 968 (1351)
+|||+||.. ...|||.+++++ .||+||+|| ++ +||.+.| +.+.-+..
T Consensus 161 ~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LG-vt--------------aI~L~Pi--------~~~~~~~~--- 214 (688)
T TIGR02100 161 AHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLG-VT--------------AVELLPV--------HAFIDDRH--- 214 (688)
T ss_pred EEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcC-CC--------------EEEECCc--------ccCCcccc---
Confidence 999999964 235788887764 577777777 23 2233322 11100000
Q ss_pred cCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCC---CCHHHHHHHHHHHHH
Q psy9001 969 KLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLF---GTPEQLKYLVDECHK 1044 (1351)
Q Consensus 969 ~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~y---Gt~edfK~LV~~aH~ 1044 (1351)
. ..-....+||| +.|||+++|+| |+++|||+||++||+
T Consensus 215 -------------------------------------~-~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~ 256 (688)
T TIGR02100 215 -------------------------------------L-LEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHD 256 (688)
T ss_pred -------------------------------------c-cccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHH
Confidence 0 00001135899 89999999999 679999999999999
Q ss_pred cCCEEEEEeecccccCCcccc-CcCCCCCC-CccccCCCC--CCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy9001 1045 AGLYVLLDVVHSHASKNVLDG-LNEFDGTQ-ACFFHDGPR--GTHPLW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQFD 1118 (1351)
Q Consensus 1045 ~GI~VILDVV~NHts~~~~~~-l~~~dg~~-~~yf~~~~~--g~~~~w--~~~dlN~~np~Vr~~lid~l~yWl~eygVD 1118 (1351)
+||+||||||+|||+..+..+ ...+.+.. .+||+..+. +.+.+| |+++||+++|+||++|+++++||++|||||
T Consensus 257 ~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gID 336 (688)
T TIGR02100 257 AGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVD 336 (688)
T ss_pred CCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999875322 12233322 356654433 444444 578999999999999999999999999999
Q ss_pred eEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccc
Q psy9001 1119 GFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD 1198 (1351)
Q Consensus 1119 GFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFd 1198 (1351)
|||||+|..|.+...+ + + ....++++++.. ...|++++|||.|...+ ++
T Consensus 337 GfR~D~a~~l~~~~~~----~------------~-~~~~~~~~i~~d--~~~~~~~ligE~W~~~~--------~~---- 385 (688)
T TIGR02100 337 GFRFDLATTLGRELYG----F------------D-MLSGFFTAIRQD--PVLAQVKLIAEPWDIGP--------GG---- 385 (688)
T ss_pred EEEEechhhhccccCC----C------------c-ccHHHHHHHHhC--cccCCeEEEEeeecCCC--------Cc----
Confidence 9999999988432111 1 0 023345555442 36889999999874321 11
Q ss_pred cccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccc-cCccccccCCCCccceeeecc
Q psy9001 1199 YRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR-RNSIKLYLPTRTGIIDEVNLL 1277 (1351)
Q Consensus 1199 y~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r-~~s~~~y~p~~~~~~~~vnfv 1277 (1351)
++.+. |+..+++||+.||+++ ++|.+++.+....+. .+ .++...|......+..+|||+
T Consensus 386 ~~~~~--------~~~~~~~~Nd~frd~i-------r~f~~g~~~~~~~~~-----~~l~gs~~~~~~~~~~~~~~iNyv 445 (688)
T TIGR02100 386 YQVGN--------FPPGWAEWNDRYRDDM-------RRFWRGDAGMIGELA-----NRLTGSSDLFEHNGRRPWASINFV 445 (688)
T ss_pred ccccC--------CCCceEEecHHHHHHH-------HHHHcCCCCcHHHHH-----HHHhCCHhhccccCCCcCEEEEEE
Confidence 22222 4445789999999999 677777665333221 22 233344433333444459999
Q ss_pred cCCCCCcCC-------------cc--c------c--------------cccCCHHHHHHHHHHHHccCCccEEEee-ccc
Q psy9001 1278 NNVREERNN-------------EN--N------M--------------KRYIQTESNMNGFGIQTLPTQSPLYLVA-KIE 1321 (1351)
Q Consensus 1278 ~nHD~~rn~-------------~~--r------~--------------~~~~~~~~~r~A~allltspGiP~If~g-~~~ 1321 (1351)
++||..+.. ++ | . ....+.+++|+|++++||+|||||||+| |+.
T Consensus 446 ~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g 525 (688)
T TIGR02100 446 TAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDEFG 525 (688)
T ss_pred eCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHhhc
Confidence 999975520 00 0 0 0112347899999999999999999999 777
Q ss_pred CC--CCccc----eeeccCCcc
Q psy9001 1322 KP--CSTRE----VVKAPLPFG 1337 (1351)
Q Consensus 1322 ~~--~~~~~----~~~~p~~~~ 1337 (1351)
.. |.+-. ..+|.|+|.
T Consensus 526 ~t~~G~~n~y~~~~~~~~~dW~ 547 (688)
T TIGR02100 526 RTQQGNNNAYCQDNEIGWVDWS 547 (688)
T ss_pred cCCCCCCCCccCCCcccccCcc
Confidence 76 33222 234889998
|
This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. |
| >TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-54 Score=526.09 Aligned_cols=379 Identities=25% Similarity=0.377 Sum_probs=263.3
Q ss_pred ccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEEEe--cCCCCCe
Q psy9001 787 YEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVT--EPPVVGH 863 (1351)
Q Consensus 787 ~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~--~~~~~~~ 863 (1351)
++|++ +.|+| ++++++...| ..|+|+|. | ...++||||+++. +++ .|+
T Consensus 22 ~~m~k~~~GvW--------------~~~v~~~~~G-------~~Y~y~v~---g----~~~v~DPya~~~~~~~~~-~S~ 72 (542)
T TIGR02402 22 HAMQRLGDGWF--------------EITVPPVGPG-------DRYGYVLD---D----GTPVPDPASRRQPDGVHG-PSQ 72 (542)
T ss_pred EeCeECCCCEE--------------EEEECCCCCC-------CEEEEEEe---e----eEEecCccccccccCCCC-CeE
Confidence 56755 58999 8888877666 56789884 3 3588999999964 344 366
Q ss_pred eeeeeeeCCCCCCCCccccCCC-C-CCCCceEEEeecCCcccCCCcccccccccccccceeccCCCcccccccccccccC
Q psy9001 864 AYEQRIWNPKPQDKHKWTSSKP-K-KPENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLD 941 (1351)
Q Consensus 864 ~~d~~~~~p~~~~~~~w~~~~p-~-~p~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg 941 (1351)
|+|. . .|+|+.+.. . ..+++||||+|||+||. .|+|.++++. ||+||+|| ++
T Consensus 73 V~d~-----~---~~~w~~~~~~~~~~~~~viYE~hv~~f~~---~G~~~gi~~~-l~yl~~LG-v~------------- 126 (542)
T TIGR02402 73 VVDP-----D---RYAWQDTGWRGRPLEEAVIYELHVGTFTP---EGTFDAAIEK-LPYLADLG-IT------------- 126 (542)
T ss_pred EecC-----c---ccCCCCccccCCCccccEEEEEEhhhcCC---CCCHHHHHHh-hHHHHHcC-CC-------------
Confidence 6665 2 467777653 2 34899999999999996 4888888764 67777777 23
Q ss_pred CceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-cc
Q psy9001 942 FGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LV 1020 (1351)
Q Consensus 942 ~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~ 1020 (1351)
.++|+ +..+ +.+..+||| ++
T Consensus 127 --~i~L~--------------------------------------------------Pi~~-------~~~~~~~GY~~~ 147 (542)
T TIGR02402 127 --AIELM--------------------------------------------------PVAQ-------FPGTRGWGYDGV 147 (542)
T ss_pred --EEEeC--------------------------------------------------cccc-------CCCCCCCCCCcc
Confidence 22333 1100 011136888 89
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCH--
Q psy9001 1021 DECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEI-- 1098 (1351)
Q Consensus 1021 Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np-- 1098 (1351)
+|++|+|+|||++|||+||++||++||+||||||+||++.++ ..+..+. + ||... ..+.| ++++|+++|
T Consensus 148 ~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~-~~~~~~~---~-y~~~~---~~~~w-g~~~n~~~~~~ 218 (542)
T TIGR02402 148 LPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEG-NYLPRYA---P-YFTDR---YSTPW-GAAINFDGPGS 218 (542)
T ss_pred CccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcc-ccccccC---c-cccCC---CCCCC-CCccccCCCcH
Confidence 999999999999999999999999999999999999998765 2233332 2 55432 23444 457999999
Q ss_pred -HHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCC---eE
Q psy9001 1099 -EVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE---II 1174 (1351)
Q Consensus 1099 -~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd---~i 1174 (1351)
+||++|+++++||++||||||||||++..|. +.++..||+++++.++++.|+ ++
T Consensus 219 ~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~----------------------~~~~~~~l~~~~~~~~~~~p~~~~~~ 276 (542)
T TIGR02402 219 DEVRRYILDNALYWLREYHFDGLRLDAVHAIA----------------------DTSAKHILEELAREVHELAAELRPVH 276 (542)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhc----------------------cccHHHHHHHHHHHHHHHCCCCceEE
Confidence 9999999999999999999999999998873 233678999999999999999 99
Q ss_pred EEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCC-Cccc----cCCCcccccc
Q psy9001 1175 TIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFG-GFNR----LDPGTVYETY 1249 (1351)
Q Consensus 1175 lIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~-gf~r----~~~~~~~~~~ 1249 (1351)
+|||.+.+.+.++.+...+|.|||++|+..+|+....+ +.++..+.+.. ++ .... +..++.+...
T Consensus 277 li~E~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~g~~~g~~~~--------~~~~~~~l~~~l~~g~~~~~~ 346 (542)
T TIGR02402 277 LIAESDLNDPSLVTPREDGGYGLDAQWNDDFHHALHVL--LTGERQGYYAD--------FGDPLAALAKTLRDGFVYDGE 346 (542)
T ss_pred EEEecCCCCCcccccccCCccceEEEECchHHHHHHHH--hcCCcceeecc--------cCcCHHHHHHHHHHhcccCcc
Confidence 99999988888887777788899988888776521111 11111010000 00 0000 1111111111
Q ss_pred cCCcccccCccccccCCCC-ccceeeecccCCCCCcC--CcccccccCCHHHHHHHHHHHHccCCccEEEee-cccCCC
Q psy9001 1250 PEPWNNRRNSIKLYLPTRT-GIIDEVNLLNNVREERN--NENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPC 1324 (1351)
Q Consensus 1250 ~~~~~~r~~s~~~y~p~~~-~~~~~vnfv~nHD~~rn--~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~~ 1324 (1351)
...+..+..+. |... .+...|||++|||+..| .+.|+...+..+++++|++++||+||+|||||| |+....
T Consensus 347 ~~~~~~~~~~~----~~~~~~~~~~vnfl~nHD~~gn~~~~~Rl~~~~~~~~~~la~alllt~pGiP~Iy~GqE~g~~~ 421 (542)
T TIGR02402 347 YSPFRGRPHGR----PSGDLPPHRFVVFIQNHDQIGNRALGERLSQLLSPGSLKLAAALLLLSPYTPLLFMGEEYGATT 421 (542)
T ss_pred ccccccccCCC----CCCCCCHHHEEEEccCcccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCceeeccHhhcCCC
Confidence 11111111111 1110 11122999999998666 457888878888999999999999999999999 666543
|
Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. |
| >TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-53 Score=539.43 Aligned_cols=450 Identities=18% Similarity=0.232 Sum_probs=286.3
Q ss_pred cccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccccc
Q psy9001 696 KYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKL 775 (1351)
Q Consensus 696 ~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1351)
.+|+++.+++.++|++|||+|++|.|++|.. .
T Consensus 318 ~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~-------------------------~----------------------- 349 (1111)
T TIGR02102 318 KLGAQLHEDGTVTLKLWSPSADHVSVVLYDK-------------------------D----------------------- 349 (1111)
T ss_pred CCCCEEecCCCEEEEEECCCCCEEEEEEEeC-------------------------C-----------------------
Confidence 6999999888789999999999999999521 0
Q ss_pred ccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEE
Q psy9001 776 LERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATY 854 (1351)
Q Consensus 776 ~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~ 854 (1351)
+.+. ....++|.+ +.|+| +++|++...|. .+.+|..|+|+|... + .+..++||||++
T Consensus 350 -~~~~--~~~~~~m~~~~~GvW--------------~v~v~~~~~G~-~d~~G~~Y~Y~V~~~-~---~~~~~~DPYA~a 407 (1111)
T TIGR02102 350 -DQDK--VVGTVELKKGDRGVW--------------EVQLTKENTGI-DSLTGYYYHYEITRG-G---DKVLALDPYAKS 407 (1111)
T ss_pred -CCCC--ceeeEecccCCCCEE--------------EEEECCcccCc-ccCCCceEEEEEECC-C---ceEEEeChhheE
Confidence 0000 012467855 58999 77777422111 112456789999864 3 478999999999
Q ss_pred Eec-C---------CCCCeeeeeeeeCCCCCCCCccccCCC-CCCCCceEEEeecCCcccCCCcccccccccccccce-e
Q psy9001 855 VTE-P---------PVVGHAYEQRIWNPKPQDKHKWTSSKP-KKPENLKIYESHVGICTQEQKCASYEDFVRVVIPRI-V 922 (1351)
Q Consensus 855 v~~-~---------~~~~~~~d~~~~~p~~~~~~~w~~~~p-~~p~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp~i-k 922 (1351)
++. | +.+++++|....+|. .++|....+ ..++++||||+|||+||.++.++. .+ .
T Consensus 408 l~~~n~~~~~~~~~~~ks~vvD~~~~~p~---~~~~~~~~~~~~~~d~vIYElHVrdFt~d~~~~~----------~~~~ 474 (1111)
T TIGR02102 408 LAAWNDATSDDQIKVAKAAFVDPSSLGPQ---ELDFAKIENFKKREDAIIYEAHVRDFTSDPAIAG----------DLTA 474 (1111)
T ss_pred EeccCcccccccCCCCceEEEcCcccCcc---ccccccccccCCccceEEEEEechhhCcCCCCCc----------cccc
Confidence 986 4 246788887666664 466765332 356999999999999997654221 00 0
Q ss_pred ccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcceeeeccc
Q psy9001 923 KQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ 1002 (1351)
Q Consensus 923 ~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~ 1002 (1351)
..|+|.++.+++++|+++|++.++|+- .+. |++..+.. ... ..
T Consensus 475 ~~Gtf~gl~ekLdYLkeLGVT~I~LmP-------v~d------------~~~~~e~~-~~~-----------------~~ 517 (1111)
T TIGR02102 475 QFGTFAAFVEKLDYLQDLGVTHIQLLP-------VLS------------YFFVNEFK-NKE-----------------RM 517 (1111)
T ss_pred CCcCHHHHHHhHHHHHHcCCCEEEEcC-------ccc------------cccccccc-ccc-----------------cc
Confidence 124444444445555555555455551 111 11111000 000 00
Q ss_pred CCCCCCCCCCcccccc-ccccccccCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCC
Q psy9001 1003 HGHLLDRFGTPEQLKY-LVDECHKAGLFGT--------PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ 1073 (1351)
Q Consensus 1003 ~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt--------~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~ 1073 (1351)
.. +.+ -....+||| ..+||+++++||+ ++|||+||++||++||+||||||+|||+..+ .|++..
T Consensus 518 ~~-~~~-~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~-----~f~~~~ 590 (1111)
T TIGR02102 518 LD-YAS-SNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVY-----IFEDLE 590 (1111)
T ss_pred cc-ccc-cccccccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccccccc-----cccccC
Confidence 00 000 001125899 8899999999987 6899999999999999999999999999864 344444
Q ss_pred Cccc-cCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcC
Q psy9001 1074 ACFF-HDGPRGT-HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV 1151 (1351)
Q Consensus 1074 ~~yf-~~~~~g~-~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~ 1151 (1351)
+.|| +.+..|. ...||++++|.++++||++|+++++||++||||||||||+|+++
T Consensus 591 p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~----------------------- 647 (1111)
T TIGR02102 591 PNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDH----------------------- 647 (1111)
T ss_pred CCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccC-----------------------
Confidence 4444 3344443 34678889999999999999999999999999999999999755
Q ss_pred ChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCC
Q psy9001 1152 DTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDC 1231 (1351)
Q Consensus 1152 d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~ 1231 (1351)
...+++.++.+++++.|+++||||.|.....-.. ...+ .+.-.+.. .....+.|++.+|++++++.
T Consensus 648 ---d~~~~~~~~~~l~~~dP~~~liGE~W~~~~g~~~-~~~~--~~~~~~~~--------~~~~ig~FnD~~Rd~irg~~ 713 (1111)
T TIGR02102 648 ---DAASIEIAYKEAKAINPNIIMIGEGWRTYAGDEG-DPVQ--AADQDWMK--------YTETVGVFSDDIRNELKSGF 713 (1111)
T ss_pred ---CHHHHHHHHHHHHHhCcCEEEEEecccccCCCCc-cccc--ccchhhHh--------cCCcccEecHHHHHHHhccc
Confidence 3456788888999999999999999864211000 0000 01111111 11124678899999997542
Q ss_pred C--CCCCccccCCCcccccccCCcccccCccccc---cCCCCccceeeecccCCCCCcCCcccccc-------cC-----
Q psy9001 1232 S--HFGGFNRLDPGTVYETYPEPWNNRRNSIKLY---LPTRTGIIDEVNLLNNVREERNNENNMKR-------YI----- 1294 (1351)
Q Consensus 1232 ~--~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y---~p~~~~~~~~vnfv~nHD~~rn~~~r~~~-------~~----- 1294 (1351)
. .-++|..+..+...... ....++...| .|.+. |||++|||..+... ++.. ..
T Consensus 714 ~~~~~~gfi~G~~~~~~~l~----~~i~g~~~~~~~~~P~~~-----VnYV~aHDn~TL~D-~l~~~~~~~~~~~e~~~~ 783 (1111)
T TIGR02102 714 PNEGQPAFITGGARNVQGIF----KNIKAQPHNFEADSPGDV-----VQYIAAHDNLTLHD-VIAQSIKKDPKVAENQEE 783 (1111)
T ss_pred ccccccccccCCcccHHHHH----HhhcCCccccccCCcccE-----EEEEecCCCCchHh-hhhhccccCcccccchHH
Confidence 1 11234333322111111 0001111122 34444 99999999877621 1110 00
Q ss_pred CHHHHHHHHHHHHccCCccEEEeec
Q psy9001 1295 QTESNMNGFGIQTLPTQSPLYLVAK 1319 (1351)
Q Consensus 1295 ~~~~~r~A~allltspGiP~If~g~ 1319 (1351)
..++.|+|++++||+||||||++||
T Consensus 784 ~~~r~rla~~llllSQGiPfi~aGq 808 (1111)
T TIGR02102 784 IHRRIRLGNLMVLTSQGTAFIHSGQ 808 (1111)
T ss_pred HHHHHHHHHHHHHHhCcHhhhhcch
Confidence 1257889999999999999999994
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645). |
| >TIGR02100 glgX_debranch glycogen debranching enzyme GlgX | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=507.55 Aligned_cols=286 Identities=24% Similarity=0.339 Sum_probs=216.0
Q ss_pred ccccccCceeEEE-----EEEEEEEeecCCCCc---cccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEec----
Q psy9001 61 LVDECHKAGLLCF-----MHVVCAAGDFNNWNR---EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ---- 128 (1351)
Q Consensus 61 l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~---~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~---- 128 (1351)
|+....+.||+|+ |++|+|+ .|++++. ..++|.+..+|||+++||++.+| .+|+|+|++.
T Consensus 7 LGa~~~~~g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g-------~~Y~yrv~g~~~~~ 78 (688)
T TIGR02100 7 LGATWDGQGVNFALFSANAEKVELC-LFDAQGEKEEARLPLPERTDDIWHGYLPGAQPG-------QLYGYRVHGPYDPE 78 (688)
T ss_pred CCeEEeCCcEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCCCCEEEEEECCCCCC-------CEEEEEEeeeeCCC
Confidence 4555677899999 9999997 4665542 25789888899999999988765 5999999963
Q ss_pred CCce----eeccCCcceEEecCCCC--cc----------------------ceeeeeeCCCCCCCCccCCC--CCC-CCC
Q psy9001 129 HGHL----LDRLSPWATYVTEPPVV--GH----------------------AYEQRIWNPKPQDKHKWTSS--KPK-KPD 177 (1351)
Q Consensus 129 ~g~~----~~~~DPyA~~~~~~~~~--~~----------------------~~~~~~~~p~~~~~~~w~~~--~p~-~~~ 177 (1351)
+|.+ ..++||||++++.+... +. ...+.+.++ .|+|+++ +|. .++
T Consensus 79 ~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~----~~~w~~~~~~p~~~~~ 154 (688)
T TIGR02100 79 NGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDP----DFDWGGDEQRPRTPWE 154 (688)
T ss_pred CCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCC----CCCCCCcccCCCCCcc
Confidence 3432 47899999999866320 00 012334443 4789875 333 568
Q ss_pred CceEEEEecCCccCC------CCCCCHHHHHHh-hhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccc
Q psy9001 178 NLKIYESHVGICTQE------QKCASYEDFVRV-VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 250 (1351)
Q Consensus 178 ~~vIYE~hvr~ft~~------~~~G~~~gi~~~-~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~ 250 (1351)
++||||+|||+||.. ..+|||+|++++ .|||||+||||+ |||||||++.+ +....+.
T Consensus 155 d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvta----I~L~Pi~~~~~-----------~~~~~~~- 218 (688)
T TIGR02100 155 DTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTA----VELLPVHAFID-----------DRHLLEK- 218 (688)
T ss_pred ccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCE----EEECCcccCCc-----------ccccccc-
Confidence 999999999999852 457999999985 599999999999 99999876311 0001111
Q ss_pred ccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHH
Q psy9001 251 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 330 (1351)
Q Consensus 251 ~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H 330 (1351)
...++|||++.+|| +|+++|++. |+++|||+||++||
T Consensus 219 ------~~~~ywGYd~~~y~---------------------a~d~~y~~~----------------g~~~efk~LV~~~H 255 (688)
T TIGR02100 219 ------GLRNYWGYNTLGFF---------------------APEPRYLAS----------------GQVAEFKTMVRALH 255 (688)
T ss_pred ------CCCCccCcCccccc---------------------ccChhhcCC----------------CCHHHHHHHHHHHH
Confidence 13467999999999 888444331 68999999999999
Q ss_pred HcCCEEEEEeeccccccCCcCCc-ccCCCCCC-cCcccCCC--CCCCCCC--CccCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy9001 331 KAGLYVLLDVVHSHASKNVLDGL-NEFDGTQA-CFFHDGPR--GTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQF 404 (1351)
Q Consensus 331 ~~GI~VILDvV~NH~~~~~~~~~-~~f~g~~~-~yy~~~~~--~~~~~w~--~~~ln~~~p~v~~~l~~~l~~W~~e~~v 404 (1351)
++||+||||||+|||+..+..+. ..+.+.++ .||+..+. +.+.+|. ++++|+++|+||++|+++++||++||||
T Consensus 256 ~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gI 335 (688)
T TIGR02100 256 DAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHV 335 (688)
T ss_pred HCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999998754443 45666553 56655443 4444553 5789999999999999999999999999
Q ss_pred Ccccccccccccc
Q psy9001 405 DGFRFDGVTSMLY 417 (1351)
Q Consensus 405 DGfR~D~a~~~~~ 417 (1351)
||||||+|..|.+
T Consensus 336 DGfR~D~a~~l~~ 348 (688)
T TIGR02100 336 DGFRFDLATTLGR 348 (688)
T ss_pred cEEEEechhhhcc
Confidence 9999999998744
|
This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. |
| >PRK03705 glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=502.64 Aligned_cols=287 Identities=22% Similarity=0.292 Sum_probs=217.7
Q ss_pred ccccccCceeEEE-----EEEEEEEeecCCC-CccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEec----CC
Q psy9001 61 LVDECHKAGLLCF-----MHVVCAAGDFNNW-NREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ----HG 130 (1351)
Q Consensus 61 l~~~~~~~gv~F~-----A~~V~LvGDFN~W-d~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~----~g 130 (1351)
|+....++||+|+ |++|+|+. |+++ ....++|.+.++|+|+++||++.+| ++|+|+|+++ +|
T Consensus 12 LGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G-------~~Y~yrv~g~~~p~~g 83 (658)
T PRK03705 12 LGAHYDGQGVNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARPG-------LRYGYRVHGPWQPAQG 83 (658)
T ss_pred cceEEeCCCEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCCC-------CEEEEEEccccCcccC
Confidence 4445567899999 99999986 6665 3356899888899999999988765 6999999863 34
Q ss_pred ce----eeccCCcceEEecCCC---------------Ccc--ceeeeeeCCCCCCCCccCCCCCC--CCCCceEEEEecC
Q psy9001 131 HL----LDRLSPWATYVTEPPV---------------VGH--AYEQRIWNPKPQDKHKWTSSKPK--KPDNLKIYESHVG 187 (1351)
Q Consensus 131 ~~----~~~~DPyA~~~~~~~~---------------~~~--~~~~~~~~p~~~~~~~w~~~~p~--~~~~~vIYE~hvr 187 (1351)
.+ ..++||||++++.... .+. ...+.+.+ .+|+|++++++ .++++||||+|||
T Consensus 84 ~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d----~~~~W~~~~~p~~~~~~~vIYE~hvr 159 (658)
T PRK03705 84 HRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVD----DHYDWEDDAPPRTPWGSTVIYEAHVR 159 (658)
T ss_pred cccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEec----CCCCCCCCCCCCCCccccEEEEEehh
Confidence 32 4689999999986421 000 11222333 25899887553 5689999999999
Q ss_pred CccC------CCCCCCHHHHHHh-hhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCcc
Q psy9001 188 ICTQ------EQKCASYEDFVRV-VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQA 260 (1351)
Q Consensus 188 ~ft~------~~~~G~~~gi~~~-~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~ 260 (1351)
+||. ...+|+|++++++ .|||||+||||+ |||||||++.+ +...... ...+
T Consensus 160 ~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~----I~L~Pv~~~~~-----------~~~~~~~-------g~~~ 217 (658)
T PRK03705 160 GLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITA----LELLPVAQFAS-----------EPRLQRM-------GLSN 217 (658)
T ss_pred hhcccCCCCCccccccHHHhhcccchHHHHHcCCCE----EEecCcccCCC-----------ccccccc-------cccc
Confidence 9984 2458999999973 499999999999 99999776421 0001100 1246
Q ss_pred ccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q psy9001 261 LVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDV 340 (1351)
Q Consensus 261 ~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDv 340 (1351)
+|||++.+|| +|+++|+++ +. .+++|||+||++||++||+|||||
T Consensus 218 ywGYd~~~yf---------------------a~d~~ygt~-------------~~-~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 218 YWGYNPLAMF---------------------ALDPAYASG-------------PE-TALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred ccCccccccc---------------------ccccccCCC-------------Cc-chHHHHHHHHHHHHHCCCEEEEEE
Confidence 7999999999 888555543 11 457899999999999999999999
Q ss_pred eccccccCCcCCc-ccCCCCCC-cCcccCCCCCCCCCC--CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccc
Q psy9001 341 VHSHASKNVLDGL-NEFDGTQA-CFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 416 (1351)
Q Consensus 341 V~NH~~~~~~~~~-~~f~g~~~-~yy~~~~~~~~~~w~--~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~ 416 (1351)
|+|||+.....+. ..+.+.++ .||+.++.+.+.+|. +++||+++|+||++|+++++||++||||||||||+|..|.
T Consensus 263 V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~ 342 (658)
T PRK03705 263 VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLG 342 (658)
T ss_pred cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhC
Confidence 9999997543332 34566553 566666667777786 4799999999999999999999999999999999999884
|
|
| >TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=509.91 Aligned_cols=298 Identities=22% Similarity=0.328 Sum_probs=218.1
Q ss_pred ccccccCce-eEEE-----EEEEEEEe-ecCCCCc--cccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCc
Q psy9001 61 LVDECHKAG-LLCF-----MHVVCAAG-DFNNWNR--EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGH 131 (1351)
Q Consensus 61 l~~~~~~~g-v~F~-----A~~V~LvG-DFN~Wd~--~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~ 131 (1351)
|+..+.+.| ++|+ |++|+|++ |+++|+. ..++|.+.+.|+|+++|++...|. .-.+|.+|+|+|+. .+.
T Consensus 319 LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~-~d~~G~~Y~Y~V~~-~~~ 396 (1111)
T TIGR02102 319 LGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGI-DSLTGYYYHYEITR-GGD 396 (1111)
T ss_pred CCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCc-ccCCCceEEEEEEC-CCc
Confidence 455555555 8999 99999987 6666754 368999988999999999765442 22468899999985 466
Q ss_pred eeeccCCcceEEecCC----------CCccceeeeeeCCCCCCCCccCCCCC-CCCCCceEEEEecCCccCC--------
Q psy9001 132 LLDRLSPWATYVTEPP----------VVGHAYEQRIWNPKPQDKHKWTSSKP-KKPDNLKIYESHVGICTQE-------- 192 (1351)
Q Consensus 132 ~~~~~DPyA~~~~~~~----------~~~~~~~~~~~~p~~~~~~~w~~~~p-~~~~~~vIYE~hvr~ft~~-------- 192 (1351)
...++||||+++.... ..+++++.....|+ .++|.+..+ ..+++++|||+|||+||..
T Consensus 397 ~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~---~~~~~~~~~~~~~~d~vIYElHVrdFt~d~~~~~~~~ 473 (1111)
T TIGR02102 397 KVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQ---ELDFAKIENFKKREDAIIYEAHVRDFTSDPAIAGDLT 473 (1111)
T ss_pred eEEEeChhheEEeccCcccccccCCCCceEEEcCcccCcc---ccccccccccCCccceEEEEEechhhCcCCCCCcccc
Confidence 6789999999997522 12333332222232 467765332 3578999999999999842
Q ss_pred CCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccc-cccccccccccCCCCccccCcccccccc
Q psy9001 193 QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTN-RRYMEKTVAYAESHDQALVGDKTIAFWL 271 (1351)
Q Consensus 193 ~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~-~~~~e~~~~~~~s~~~~~wGY~~~~y~~ 271 (1351)
..+|+|+||+++ |||||+||||| |||||||++.- +.+..+ .+.. ++..+...++|||+|.+||
T Consensus 474 ~~~Gtf~gl~ek-LdYLkeLGVT~----I~LmPv~d~~~------~~e~~~~~~~~----~~~~~~~~ynWGYdp~~yf- 537 (1111)
T TIGR02102 474 AQFGTFAAFVEK-LDYLQDLGVTH----IQLLPVLSYFF------VNEFKNKERML----DYASSNTNYNWGYDPQNYF- 537 (1111)
T ss_pred cCCcCHHHHHHh-HHHHHHcCCCE----EEEcCcccccc------ccccccccccc----cccccccccccCCCcCcCc-
Confidence 147999999999 99999999999 99999886310 000000 0111 1111223457999999999
Q ss_pred cchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcC
Q psy9001 272 MDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 351 (1351)
Q Consensus 272 ~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~ 351 (1351)
+|+++|++... ...++++|||+||++||++||+||||||+|||+..+
T Consensus 538 --------------------ape~~Ygtdp~-----------dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~-- 584 (1111)
T TIGR02102 538 --------------------ALSGMYSEDPK-----------DPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVY-- 584 (1111)
T ss_pred --------------------ccccccccCCc-----------CccccHHHHHHHHHHHHHCCCEEEEecccccccccc--
Confidence 77766665310 123468999999999999999999999999999863
Q ss_pred CcccCCCCCCcCccc-CCCCC-CCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 352 GLNEFDGTQACFFHD-GPRGT-HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 352 ~~~~f~g~~~~yy~~-~~~~~-~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
.|++..+.||+. +..+. ...|+++.+|++|++||++|+++++||++||||||||||+|..+
T Consensus 585 ---~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~ 647 (1111)
T TIGR02102 585 ---IFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDH 647 (1111)
T ss_pred ---cccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccC
Confidence 567776666643 33333 34577889999999999999999999999999999999998754
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645). |
| >COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=478.13 Aligned_cols=292 Identities=24% Similarity=0.320 Sum_probs=223.0
Q ss_pred ccCceeEEE-----EEEEEEE-eecCCCCc--cccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEec----CCce
Q psy9001 65 CHKAGLLCF-----MHVVCAA-GDFNNWNR--EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ----HGHL 132 (1351)
Q Consensus 65 ~~~~gv~F~-----A~~V~Lv-GDFN~Wd~--~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~----~g~~ 132 (1351)
+...|+.|+ |++|.|+ -|+..=.. +.++|....+.+|++.+|++.+| +.|.|++.+. .|.+
T Consensus 27 ~~~~g~~f~l~s~~a~~v~l~l~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~~~g-------~~y~yr~~g~~~~~~g~~ 99 (697)
T COG1523 27 IDGDGVNFALFSSHAERVELCLFDEAGNTEEGRLYPYDGELGAIWHLWLPGAKPG-------QVYGYRVHGPYDPEEGHR 99 (697)
T ss_pred ccCcceEEeeeccccceEEEEecCcccccccccccccCCccccEEEEEcCCCcee-------eEEEEecCCCcCCccCee
Confidence 456899999 8899887 22221111 12666666677999999999876 5999999763 3444
Q ss_pred e----eccCCcceEEecCCCCc-c-c--e-------------eeeeeCCCC--CC-CCccCCCCCC--CCCCceEEEEec
Q psy9001 133 L----DRLSPWATYVTEPPVVG-H-A--Y-------------EQRIWNPKP--QD-KHKWTSSKPK--KPDNLKIYESHV 186 (1351)
Q Consensus 133 ~----~~~DPyA~~~~~~~~~~-~-~--~-------------~~~~~~p~~--~~-~~~w~~~~p~--~~~~~vIYE~hv 186 (1351)
+ ...||||+.+......+ . . + +.....|++ .+ .++|+.++++ ++.++||||+||
T Consensus 100 f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~~~~~w~~~~~~~~p~~~~vIYE~HV 179 (697)
T COG1523 100 FDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVIDPLFDWENDKPPRIPWEDTVIYEAHV 179 (697)
T ss_pred eccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEeccccccccCCCCCCCccceEEEEeee
Confidence 3 56899999998765321 0 0 0 000011221 12 2799988664 469999999999
Q ss_pred CCcc------CCCCCCCHHHHHHh-hhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCc
Q psy9001 187 GICT------QEQKCASYEDFVRV-VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 259 (1351)
Q Consensus 187 r~ft------~~~~~G~~~gi~~~-~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~ 259 (1351)
|+|| ++..+|||.++++. .|+|||+||||| |||||||++. .++... .+...
T Consensus 180 r~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvta----VeLLPV~~~~-----------~~~~l~-------~~gl~ 237 (697)
T COG1523 180 RDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTA----VELLPVFDFY-----------DEPHLD-------KSGLN 237 (697)
T ss_pred cccccCCCCCchhhccceehhccccHHHHHHHhCCce----EEEecceEEe-----------cccccc-------ccccc
Confidence 9998 34678999999984 499999999999 9999977642 122222 23568
Q ss_pred cccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q psy9001 260 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLD 339 (1351)
Q Consensus 260 ~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILD 339 (1351)
|||||+|.+|| ||+++|++.. .+-+.+.|||.||+++|++||+||||
T Consensus 238 n~WGYdP~~fF---------------------Ap~~~Yss~p------------~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 238 NNWGYDPLNFF---------------------APEGRYASNP------------EPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred cccCCCccccc---------------------CCCccccCCC------------CcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 99999999999 7887787642 12456889999999999999999999
Q ss_pred eeccccccCCcCCc-ccCCCCCC-cCcccCCCCCCCCCC--CccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 340 VVHSHASKNVLDGL-NEFDGTQA-CFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 340 vV~NH~~~~~~~~~-~~f~g~~~-~yy~~~~~~~~~~w~--~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
||||||++....+. .+|+|+++ +||+.+++|.+.+++ ||.+|++||+||++|+|+|+||++||||||||||+|+.+
T Consensus 285 VVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l 364 (697)
T COG1523 285 VVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVL 364 (697)
T ss_pred EeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhc
Confidence 99999998765564 88999987 567777788887775 689999999999999999999999999999999999988
Q ss_pred ccc
Q psy9001 416 LYH 418 (1351)
Q Consensus 416 ~~~ 418 (1351)
.+.
T Consensus 365 ~r~ 367 (697)
T COG1523 365 GRE 367 (697)
T ss_pred ccc
Confidence 553
|
|
| >TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-48 Score=475.17 Aligned_cols=287 Identities=26% Similarity=0.394 Sum_probs=229.0
Q ss_pred eEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEEe
Q psy9001 70 LLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVT 144 (1351)
Q Consensus 70 v~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~ 144 (1351)
|+|+ |++|+|+++ ...++|++.++|+|+++|++..+| ..|+|+|++ ...++||||+++.
T Consensus 1 v~FrlwAP~A~~V~L~l~-----~~~~~m~k~~~GvW~~~v~~~~~G-------~~Y~y~v~g----~~~v~DPya~~~~ 64 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN-----GALHAMQRLGDGWFEITVPPVGPG-------DRYGYVLDD----GTPVPDPASRRQP 64 (542)
T ss_pred CEEEEECCCCCEEEEEeC-----CCEEeCeECCCCEEEEEECCCCCC-------CEEEEEEee----eEEecCccccccc
Confidence 5677 999999862 246899998899999999987655 699999974 2578999999975
Q ss_pred cCCCCccceeeeeeCCCCCCCCccCCCCC--CCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEE
Q psy9001 145 EPPVVGHAYEQRIWNPKPQDKHKWTSSKP--KKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIE 222 (1351)
Q Consensus 145 ~~~~~~~~~~~~~~~p~~~~~~~w~~~~p--~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~ 222 (1351)
..... .+.+++|. .|+|++..+ +.+++++|||+|||+||+ .|+|+|++++ |||||+||||+ ||
T Consensus 65 ~~~~~----~S~V~d~~---~~~w~~~~~~~~~~~~~viYE~hv~~f~~---~G~~~gi~~~-l~yl~~LGv~~----i~ 129 (542)
T TIGR02402 65 DGVHG----PSQVVDPD---RYAWQDTGWRGRPLEEAVIYELHVGTFTP---EGTFDAAIEK-LPYLADLGITA----IE 129 (542)
T ss_pred cCCCC----CeEEecCc---ccCCCCccccCCCccccEEEEEEhhhcCC---CCCHHHHHHh-hHHHHHcCCCE----EE
Confidence 43321 24455664 578887654 357899999999999987 5999999998 99999999999 99
Q ss_pred EeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCcc
Q psy9001 223 LLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQ 302 (1351)
Q Consensus 223 L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~ 302 (1351)
|||||+ . +. ..+|||++.+|| +|+
T Consensus 130 L~Pi~~--------------------~--~~-----~~~~GY~~~~~~---------------------~~~-------- 153 (542)
T TIGR02402 130 LMPVAQ--------------------F--PG-----TRGWGYDGVLPY---------------------APH-------- 153 (542)
T ss_pred eCcccc--------------------C--CC-----CCCCCCCccCcc---------------------ccc--------
Confidence 999654 2 21 245999999999 777
Q ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCC
Q psy9001 303 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNY 382 (1351)
Q Consensus 303 ~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~ 382 (1351)
++||+++|||+||++||++||+||||+|+||++.++.. +..+ .+ ||... ....| ++.+|+
T Consensus 154 -----------~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~-~~~~---~~-y~~~~---~~~~w-g~~~n~ 213 (542)
T TIGR02402 154 -----------NAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNY-LPRY---AP-YFTDR---YSTPW-GAAINF 213 (542)
T ss_pred -----------cccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcccc-cccc---Cc-cccCC---CCCCC-CCcccc
Confidence 89999999999999999999999999999999876321 1222 23 66432 23345 468999
Q ss_pred CCH---HHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCC
Q psy9001 383 SEI---EVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 459 (1351)
Q Consensus 383 ~~p---~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~ 459 (1351)
++| +||++|+++++||++||||||||||++..|. +.++..||+++++.+++++|+
T Consensus 214 ~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~----------------------~~~~~~~l~~~~~~~~~~~p~ 271 (542)
T TIGR02402 214 DGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIA----------------------DTSAKHILEELAREVHELAAE 271 (542)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhc----------------------cccHHHHHHHHHHHHHHHCCC
Confidence 999 9999999999999999999999999998872 123568999999999999999
Q ss_pred ---eEEEEEcCCCCCCcccccccCCCCCC
Q psy9001 460 ---IITIAEDVSGMPASCRPVTEGGTGFD 485 (1351)
Q Consensus 460 ---~~~iaE~~~~~p~~~~~~~~gg~gfd 485 (1351)
+++|||.+...|.++.+...++.+||
T Consensus 272 ~~~~~li~E~~~~~~~~~~~~~~~~~~~d 300 (542)
T TIGR02402 272 LRPVHLIAESDLNDPSLVTPREDGGYGLD 300 (542)
T ss_pred CceEEEEEecCCCCCcccccccCCccceE
Confidence 99999998777766655444444443
|
Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. |
| >COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=485.42 Aligned_cols=384 Identities=23% Similarity=0.335 Sum_probs=266.5
Q ss_pred cccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEEEecCCCCCee
Q psy9001 786 QYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPVVGHA 864 (1351)
Q Consensus 786 ~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~~~~~~~~ 864 (1351)
.+.|.+ ..|+| ...+.++.+...+...+..|.|.+....- ..+.+||++|+|+.+..
T Consensus 99 ~f~~~k~l~dpy--------------a~~l~g~~~~~~~~~~~y~~~~~~~~~~~----~~~~~~~~~Ksvv~~~~---- 156 (697)
T COG1523 99 RFDPNKLLLDPY--------------AKALDGDLKWGTPALFGYYYGYQITNLSP----DRDSADPYPKSVVIDPL---- 156 (697)
T ss_pred eeccccccccce--------------eEEeccccccCccccccccccccccccCc----cccccccCCceEEeccc----
Confidence 355644 58999 66667666554333334455566653332 47888999999987652
Q ss_pred eeeeeeCCCCCCCCccccCCCC-CC-CCceEEEeecCCcc-cC-----CCcccccccccc-cccceeccCCCcccccccc
Q psy9001 865 YEQRIWNPKPQDKHKWTSSKPK-KP-ENLKIYESHVGICT-QE-----QKCASYEDFVRV-VIPRIVKQGDFNNWNREEF 935 (1351)
Q Consensus 865 ~d~~~~~p~~~~~~~w~~~~p~-~p-~d~iIYE~HV~~~s-~~-----~~~gty~~f~~~-~lp~ik~lG~fn~~~~~~~ 935 (1351)
++|+.++|+ .| +++||||+|||+|| .+ +.+|||.++++. .++++|+||
T Consensus 157 -------------~~w~~~~~~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LG---------- 213 (697)
T COG1523 157 -------------FDWENDKPPRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLG---------- 213 (697)
T ss_pred -------------cccccCCCCCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhC----------
Confidence 457777643 45 99999999999999 33 357999999874 366666666
Q ss_pred cccccCCceEEEe-------cCCCC-CCCCcccccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCC
Q psy9001 936 AYKKLDFGKWELV-------LPPNP-DGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLL 1007 (1351)
Q Consensus 936 ~l~~lg~giwel~-------ip~~~-~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~ 1007 (1351)
++.+||+ .+++. .+..|+|||++..|. .++|.|+
T Consensus 214 ------vtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fF--------------------------------Ap~~~Ys 255 (697)
T COG1523 214 ------VTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFF--------------------------------APEGRYA 255 (697)
T ss_pred ------CceEEEecceEEeccccccccccccccCCCccccc--------------------------------CCCcccc
Confidence 3445555 23333 566677888777763 3444444
Q ss_pred CCCCCccccccccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCc-cccCcCCCCCCC-ccccCCCCCCC
Q psy9001 1008 DRFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV-LDGLNEFDGTQA-CFFHDGPRGTH 1085 (1351)
Q Consensus 1008 ~~~~sp~~hgY~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~-~~~l~~~dg~~~-~yf~~~~~g~~ 1085 (1351)
+.+. | -+.+.|||.||+++|++||+||||||||||+... ......|++.++ +||+.++.|.+
T Consensus 256 s~p~-p---------------~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~ 319 (697)
T COG1523 256 SNPE-P---------------ATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYY 319 (697)
T ss_pred CCCC-c---------------chHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCe
Confidence 4333 3 2568899999999999999999999999998743 334556777765 57777777888
Q ss_pred CCC--CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHH
Q psy9001 1086 PLW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVAN 1163 (1351)
Q Consensus 1086 ~~w--~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~ 1163 (1351)
.++ |+|.+|.++|+||++|+|+|+||++||||||||||+|+.+.+. ++
T Consensus 320 ~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~-----------------------~~------- 369 (697)
T COG1523 320 SNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRE-----------------------TM------- 369 (697)
T ss_pred ecCCccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhcccc-----------------------cc-------
Confidence 777 7899999999999999999999999999999999999988322 11
Q ss_pred HHHHhhCCCeEEEEccCC---CCCCcccccccCCccccccccccccccccccc--ccccccCchhHhhhccCCCCCCCcc
Q psy9001 1164 KFLHDKYPEIITIAEDVS---GMPASCRPVTEGGTGFDYRLGQYLHQHSILFP--RVGVEQAGKYKVVLDSDCSHFGGFN 1238 (1351)
Q Consensus 1164 ~~l~~~~Pd~ilIaE~~~---~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~--~~~~e~n~~~rd~l~~d~~~~~gf~ 1238 (1351)
..+..|.+++++|.|. +...+.+||+.|-.| |++|. || ..+++||+.|||.+ ++|+
T Consensus 370 --~~~~~~~l~~~~~~~p~l~~~kliAepwD~g~~g--yqvG~--------Fpd~~~~aewng~~rD~v-------r~F~ 430 (697)
T COG1523 370 --LFDINANLFLAGEGDPVLSGVKLIAEPWDIGPGG--YQVGN--------FPDSPRWAEWNGRFRDDV-------RRFW 430 (697)
T ss_pred --ccccCcchhhhccCCccccCceeeecchhhcCCC--ccccc--------CCCccchhhhCCcccccc-------ccee
Confidence 1223344444444332 222334455554223 77777 66 67899999999988 8999
Q ss_pred ccCCCcccccccCCcccc-cCccccccCCCCccceeeecccCCCCCcC--------------------------------
Q psy9001 1239 RLDPGTVYETYPEPWNNR-RNSIKLYLPTRTGIIDEVNLLNNVREERN-------------------------------- 1285 (1351)
Q Consensus 1239 r~~~~~~~~~~~~~~~~r-~~s~~~y~p~~~~~~~~vnfv~nHD~~rn-------------------------------- 1285 (1351)
+++.+....+. .| .+|.++|....+.+..+|||+++||..+.
T Consensus 431 ~G~~~~~~~~a-----~rl~gS~d~~~~~~~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~ 505 (697)
T COG1523 431 RGDAGLVGEFA-----KRLAGSSDLYKRNGRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGV 505 (697)
T ss_pred eCCCccHHHHH-----HHhhcCcchhhccCCCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhcccccc
Confidence 99877655543 33 45556777666666666999999995221
Q ss_pred ---CcccccccCCHHHHHHHHHHHHccCCccEEEee-cccC
Q psy9001 1286 ---NENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEK 1322 (1351)
Q Consensus 1286 ---~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~ 1322 (1351)
.+.......+..+.++.++.+|++||+||+.+| |...
T Consensus 506 eg~t~~p~i~~~re~~~~~~~~tlllsqG~pml~~gDe~~r 546 (697)
T COG1523 506 EGPTGDPFIHAGRERQRTNLLATLLLSQGTPMLLAGDEFGR 546 (697)
T ss_pred ccCCCCHHHHHhHHHHHHHHHHHHHhhcCCccccccccccc
Confidence 011111122446778888999999999999999 7766
|
|
| >PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=513.49 Aligned_cols=452 Identities=17% Similarity=0.184 Sum_probs=297.8
Q ss_pred hhccccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcccccc
Q psy9001 693 SYNKYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPEL 772 (1351)
Q Consensus 693 ~y~~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (1351)
....+|+++..++ +.|++|||.|++|.|++|+.|.. .
T Consensus 12 ~~~plGA~~~~~g-v~F~v~ap~A~~V~L~lf~~~~~-----------------------------------~------- 48 (1221)
T PRK14510 12 FREPLGAVPDGGG-VNLALFSGAAERVEFCLFDLWGV-----------------------------------R------- 48 (1221)
T ss_pred CCCCCceEEECCe-EEEEEECCCCCEEEEEEEECCCC-----------------------------------C-------
Confidence 3457999998766 99999999999999999643100 0
Q ss_pred cccccCCCCCCccccccc-cccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCce----e-eEEE
Q psy9001 773 HKLLERDPYLNPYQYEMK-RRYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLM----V-NFLE 846 (1351)
Q Consensus 773 ~~~~~~~~~~~~~~~~m~-~~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~----~-~~~~ 846 (1351)
....++|. +..|+| ++.|++...| ..|.|++....+.. . ....
T Consensus 49 ----------~~~~~~l~~~~g~vW--------------~~~i~~~~~g-------~~Ygyrv~g~~~p~~g~rf~p~~~ 97 (1221)
T PRK14510 49 ----------EEARIKLPGRTGDVW--------------HGFIVGVGPG-------ARYGNRQEGPGGPGEGHRFNPPKL 97 (1221)
T ss_pred ----------eeEEEECCCCcCCEE--------------EEEEccCCCC-------cEEEEEeccCCCcccccccCCCeE
Confidence 01234563 458999 7777776665 45789886433200 0 0246
Q ss_pred ecCcceEEEecCCCC-Ceeee------------eeeeCCC--CCCCCccccCCCC-CC-CCceEEEeecCCccc-CC---
Q psy9001 847 QLSPWATYVTEPPVV-GHAYE------------QRIWNPK--PQDKHKWTSSKPK-KP-ENLKIYESHVGICTQ-EQ--- 905 (1351)
Q Consensus 847 ~~dPya~~v~~~~~~-~~~~d------------~~~~~p~--~~~~~~w~~~~p~-~p-~d~iIYE~HV~~~s~-~~--- 905 (1351)
.+||||++++..... ..++. .....|+ ..++|+|+.++++ .+ ++++|||+|||+||. ++
T Consensus 98 ~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~~~~~~~~~d~vIYE~hvr~ft~~~~~~g 177 (1221)
T PRK14510 98 LVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPRSPLHGDWDDSPLYEMNVRGFTLRHDFFP 177 (1221)
T ss_pred eeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCCCCCCCCcccCeEEEEccchhhccCCCCC
Confidence 899999999874321 11221 1122232 1236899877743 34 899999999999996 32
Q ss_pred --Cccccccccc-ccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCC
Q psy9001 906 --KCASYEDFVR-VVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPN 982 (1351)
Q Consensus 906 --~~gty~~f~~-~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~ 982 (1351)
..|+|.++.+ ..+++||+|| ++.++|+- .+.+. ++..
T Consensus 178 g~~~Gt~~~l~~~~~i~yLk~LG----------------vt~I~L~P-------i~~~~-~~~~---------------- 217 (1221)
T PRK14510 178 GNLRGTFAKLAAPEAISYLKKLG----------------VSIVELNP-------IFASV-DEHH---------------- 217 (1221)
T ss_pred cccCcHHhhcCCchhHHHHHHcC----------------CCEEEeCC-------ccccC-cccc----------------
Confidence 2466666652 3455666665 44444441 11100 0000
Q ss_pred CCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCC--CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q psy9001 983 PDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFG--TPEQLKYLVDECHKAGLYVLLDVVHSHAS 1059 (1351)
Q Consensus 983 ~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yG--t~edfK~LV~~aH~~GI~VILDVV~NHts 1059 (1351)
.. ......+||| +.|||+++|+|| +++|||+||++||++||+||||||+|||+
T Consensus 218 -----------------~~-------~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~ 273 (1221)
T PRK14510 218 -----------------LP-------QLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTG 273 (1221)
T ss_pred -----------------cc-------cccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEcccccc
Confidence 00 0112246899 899999999999 99999999999999999999999999999
Q ss_pred CCcccc-CcCCCCC-CCccccCC--CCCCCCC-C-CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCC
Q psy9001 1060 KNVLDG-LNEFDGT-QACFFHDG--PRGTHPL-W-DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNH 1133 (1351)
Q Consensus 1060 ~~~~~~-l~~~dg~-~~~yf~~~--~~g~~~~-w-~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~ 1133 (1351)
.++..+ ...+.+. ...||+.. ..+.+.+ | |++.+|+++|+|+++|+++++||++ |||||||||+|..|.+
T Consensus 274 ~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r--- 349 (1221)
T PRK14510 274 ESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAR--- 349 (1221)
T ss_pred CCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhcc---
Confidence 875322 1122222 23566543 2233333 3 5678999999999999999999999 9999999999998832
Q ss_pred CCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEE-----EEccCCCCCCcccccccCCcccccccccccccc
Q psy9001 1134 GCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT-----IAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQH 1208 (1351)
Q Consensus 1134 g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~il-----IaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~ 1208 (1351)
.+..||+.++..++++.|+.++ |||.|...+ ++ |+.+.
T Consensus 350 --------------------~~~~f~~~~~~~l~ai~~d~~l~~~~ligE~Wd~~~--------~~----~~~g~----- 392 (1221)
T PRK14510 350 --------------------EPDGFIDEFRQFLKAMDQDPVLRRLKMIAEVWDDGL--------GG----YQYGK----- 392 (1221)
T ss_pred --------------------CccchHHHHHHHHHHhCCCcCcccCcEEEecccCCC--------Cc----cccCC-----
Confidence 1345888999999999999887 999874321 11 33333
Q ss_pred cccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccc-cCccccccCCCCccceeeecccCCCCCcCC-
Q psy9001 1209 SILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR-RNSIKLYLPTRTGIIDEVNLLNNVREERNN- 1286 (1351)
Q Consensus 1209 ~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r-~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~- 1286 (1351)
|+..+++||+.||+++ ++|.+++.+....+. .+ .++...|......+..+|||++|||..|..
T Consensus 393 ---f~~~~~~~N~~frd~v-------r~f~~g~~~~~~~~a-----~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~rl~d 457 (1221)
T PRK14510 393 ---FPQYWGEWNDPLRDIM-------RRFWLGDIGMAGELA-----TRLAGSADIFPHRRRNFSRSINFITAHDGFTLLD 457 (1221)
T ss_pred ---CCcceeeeccHHHHHH-------HHHhcCCCchHHHHH-----HHHhCcHhhcCccCCCcccceEEEeeCCchHHHH
Confidence 3434688999999999 677777655332221 22 233344443333344449999999965430
Q ss_pred ------------c--------cccc--------------ccCCHHHHHHHHHHHHccCCccEEEee-ccc------CCCC
Q psy9001 1287 ------------E--------NNMK--------------RYIQTESNMNGFGIQTLPTQSPLYLVA-KIE------KPCS 1325 (1351)
Q Consensus 1287 ------------~--------~r~~--------------~~~~~~~~r~A~allltspGiP~If~g-~~~------~~~~ 1325 (1351)
+ .+.. ...+.+++|+|++++||+|||||||+| |+. ..+-
T Consensus 458 l~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~GdE~g~tq~Gn~n~y 537 (1221)
T PRK14510 458 LVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYYGDEAGRSQNGNNNGY 537 (1221)
T ss_pred HhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEecchhcccccCCCCCCC
Confidence 0 0000 111346789999999999999999999 776 3333
Q ss_pred ccceeeccCCcce
Q psy9001 1326 TREVVKAPLPFGV 1338 (1351)
Q Consensus 1326 ~~~~~~~p~~~~~ 1338 (1351)
.....+++|||+-
T Consensus 538 ~~~~~r~~~~W~~ 550 (1221)
T PRK14510 538 AQDNNRGTYPWGN 550 (1221)
T ss_pred CCCCccccCCccc
Confidence 3456789999974
|
|
| >TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=488.08 Aligned_cols=334 Identities=15% Similarity=0.208 Sum_probs=246.0
Q ss_pred ccccccCceeEEE-----EEEEEEEeecCCCC-ccccceeec-CCCeEEEEcCCCCCCCcccCcccEEEEEEEec---CC
Q psy9001 61 LVDECHKAGLLCF-----MHVVCAAGDFNNWN-REEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ---HG 130 (1351)
Q Consensus 61 l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd-~~~~~M~k~-~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~---~g 130 (1351)
|+....++||+|+ |++|+|++..++++ ...++|.+. ..|+|++++|+...| .+|+|+|+.. .|
T Consensus 128 LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G-------~~Y~Y~V~v~~p~~G 200 (898)
T TIGR02103 128 LGATLTDSGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKG-------AYYRYEVTVYHPSTG 200 (898)
T ss_pred CCcEEeCCcEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCC-------CEeEEEEEEecCCCC
Confidence 4555567899999 99999997666653 456899886 689999999987655 6999999842 25
Q ss_pred --ceeeccCCcceEEecCCCCccceeee--eeCCCCCCCCccCCCC---CC--CCCCceEEEEecCCccC------CCCC
Q psy9001 131 --HLLDRLSPWATYVTEPPVVGHAYEQR--IWNPKPQDKHKWTSSK---PK--KPDNLKIYESHVGICTQ------EQKC 195 (1351)
Q Consensus 131 --~~~~~~DPyA~~~~~~~~~~~~~~~~--~~~p~~~~~~~w~~~~---p~--~~~~~vIYE~hvr~ft~------~~~~ 195 (1351)
+..+++||||++++.+...|++++.. .|.|+ .|...+ |+ .+++++|||+|||+||. ...+
T Consensus 201 ~v~~~~v~DPYA~als~n~~~S~VvDl~~~~~~p~-----~W~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~r 275 (898)
T TIGR02103 201 KVETYLVTDPYSVSLSANSEYSQVVDLNDPALKPE-----GWDALAMPKPQLASFADMVLYELHIRDFSANDESVPAELR 275 (898)
T ss_pred eECCeEEeCcCcceEcCCCCCeEEeCCccccCCCc-----chhhcccccCCcCCCcccEEEEEeccccccCCCCCCcCcC
Confidence 34678999999999887788887642 34444 898654 32 57899999999999973 2468
Q ss_pred CCHHHHHHh------hhHHHHHcCCCcCceeEEEeecccccccCcc--c---eEEEccc--------------------c
Q psy9001 196 ASYEDFVRV------VIPRIVKQGMAIPDKWIELLKKFKDEDWNMG--N---IVHTLTN--------------------R 244 (1351)
Q Consensus 196 G~~~gi~~~------~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~--~---ii~~~~~--------------------~ 244 (1351)
|+|.+++++ .|++|++||||| |+|||||+|..-+=. + +-+++.. .
T Consensus 276 GtYla~tE~~t~gi~hLk~L~eLGVTh----VeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 351 (898)
T TIGR02103 276 GKYLAFTAADSAGVQHLKKLADAGVTH----LHLLPTFDIATVNEEKEKVADIQQPFSKLCELNPDSKSSEFAGYCDSGS 351 (898)
T ss_pred ceeeehhccchhhhHHHHHHHhCCCcE----EEEcChhhcCccccccccccccccchhhhhccccccccccccccccccc
Confidence 999999985 355555779999 999999986521100 0 0000000 0
Q ss_pred ccccccc----------cccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCC
Q psy9001 245 RYMEKTV----------AYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAG 314 (1351)
Q Consensus 245 ~~~e~~~----------~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~ 314 (1351)
.+.+... ..-...+.+||||+|.+|| +|+++|++.. .
T Consensus 352 ~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~---------------------aPegSYatdp------------~ 398 (898)
T TIGR02103 352 QLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYT---------------------VPEGSYATDP------------E 398 (898)
T ss_pred cccccccccchhhhhhhhhhccCCCCCCCCCCcccC---------------------CcChhhccCC------------C
Confidence 0000000 0000123579999999999 5565555531 0
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCccc-CCCCCCCCCC-CccCCCCCHHHHHHHH
Q psy9001 315 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHD-GPRGTHPLWD-SRLFNYSEIEVLRFLL 392 (1351)
Q Consensus 315 ~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~-~~~~~~~~w~-~~~ln~~~p~v~~~l~ 392 (1351)
...++.|||+||++||++||+||||||+|||+..+......|+...+.||++ +..+...++. ..+++++||+||++|+
T Consensus 399 g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~ii 478 (898)
T TIGR02103 399 GPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIV 478 (898)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHH
Confidence 1135899999999999999999999999999987654445577776656654 3344443332 3567999999999999
Q ss_pred HHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q psy9001 393 SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 469 (1351)
Q Consensus 393 ~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~ 469 (1351)
++++||++||||||||||+|.++ ..+||+++++++++++|+++++||.|..
T Consensus 479 Dsl~~W~~ey~VDGFRfDlm~~~--------------------------~~~f~~~~~~~l~~i~pdi~l~GEgW~~ 529 (898)
T TIGR02103 479 DSLVVWAKDYKVDGFRFDLMGHH--------------------------PKAQMLAAREAIKALTPEIYFYGEGWDF 529 (898)
T ss_pred HHHHHHHHHcCCCEEEEechhhC--------------------------CHHHHHHHHHHHHHhCCCEEEEecCCCc
Confidence 99999999999999999999977 4679999999999999999999999863
|
Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102). |
| >PLN02877 alpha-amylase/limit dextrinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-46 Score=465.94 Aligned_cols=329 Identities=17% Similarity=0.193 Sum_probs=235.0
Q ss_pred ccccccCceeEEE-----EEEEEEEeecCCCCc----cccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEec---
Q psy9001 61 LVDECHKAGLLCF-----MHVVCAAGDFNNWNR----EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ--- 128 (1351)
Q Consensus 61 l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~----~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~--- 128 (1351)
|+....+++|+|+ |++|+|+. |++++. ..++|+ ..+|||++++++...| .+|+|+|+..
T Consensus 215 LGA~~~~~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-~~~GVWsv~v~~~~~G-------~~Y~Y~V~v~~p~ 285 (970)
T PLN02877 215 LGAHFSKDAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-ESNGVWSVEGPKSWEG-------CYYVYEVSVYHPS 285 (970)
T ss_pred CcceEecCCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-CCCCEEEEEeccCCCC-------CeeEEEEeecccC
Confidence 5556677899999 99999984 555532 246786 6689999999987665 6999999832
Q ss_pred CC--ceeeccCCcceEEecCCCCccceeee--eeCCCCCCCCccCC---CCCC--CCCCceEEEEecCCccC------CC
Q psy9001 129 HG--HLLDRLSPWATYVTEPPVVGHAYEQR--IWNPKPQDKHKWTS---SKPK--KPDNLKIYESHVGICTQ------EQ 193 (1351)
Q Consensus 129 ~g--~~~~~~DPyA~~~~~~~~~~~~~~~~--~~~p~~~~~~~w~~---~~p~--~~~~~vIYE~hvr~ft~------~~ 193 (1351)
.| +..+++||||++++.+...+++.+.. .|.|+ .|.. .+|+ .+++++|||+|||+||. ..
T Consensus 286 ~g~~~~~~v~DPYA~als~ng~~S~vvDl~~~~~~p~-----gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~ 360 (970)
T PLN02877 286 TGKVETCYANDPYARGLSADGRRTLLVDLDSDDLKPE-----GWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHPD 360 (970)
T ss_pred CCcccccccCCccceEEecCCCceEEECCccccCCCh-----hhhhcccccCccCCCcccEEEEEeccccccCCCCCCcC
Confidence 13 34578999999999887777776532 34444 8975 2343 46899999999999984 24
Q ss_pred CCCCHHHHHHh---h---hHHHHHcCCCcCceeEEEeecccccccCccce-EEEcccccccccccccc-----------C
Q psy9001 194 KCASYEDFVRV---V---IPRIVKQGMAIPDKWIELLKKFKDEDWNMGNI-VHTLTNRRYMEKTVAYA-----------E 255 (1351)
Q Consensus 194 ~~G~~~gi~~~---~---L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~i-i~~~~~~~~~e~~~~~~-----------~ 255 (1351)
.+|+|.+++++ . |+|||+||||| |||||+|+|..-+=.+- ...+.+..+... +.. .
T Consensus 361 ~RGtylgftE~~s~gi~hLk~LkelGVTh----VeLLPvfDf~tvdE~~~~~~~~~~~~l~~~--~~~s~~~q~~v~~~~ 434 (970)
T PLN02877 361 FRGGYLAFTSQDSAGVLHLKKLADAGLTH----VHLLPTFQFGSVDDEKENWKCVDPKELEKL--PPDSEEQQAAITAIQ 434 (970)
T ss_pred CCCcchhhhhhhhhHHHHHHHHHHcCCCE----EEeCCccccCCcccccccccccccchhccc--cccchhhhhcccccc
Confidence 68999999985 3 55555669999 99999998642110000 000000001110 100 1
Q ss_pred CCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9001 256 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 335 (1351)
Q Consensus 256 s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~ 335 (1351)
..+.+||||+|.+|| +|+++|++... . -.++.|||+||++||++||+
T Consensus 435 ~~d~yNWGYDP~~Yf---------------------aPEgSYatdP~-----------g-~~RI~efk~mV~~lH~~GI~ 481 (970)
T PLN02877 435 DDDGYNWGYNPVLWG---------------------VPKGSYASNPD-----------G-PCRIIEFRKMVQALNRIGLR 481 (970)
T ss_pred cCCCCCCCCCccccC---------------------CCCcccccCCC-----------C-cchHHHHHHHHHHHHHCCCE
Confidence 124589999999999 66666665210 1 13689999999999999999
Q ss_pred EEEEeeccccccCCcCCc-ccCCCCCCcC-cccCCCCCCCCCC-CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccc
Q psy9001 336 VLLDVVHSHASKNVLDGL-NEFDGTQACF-FHDGPRGTHPLWD-SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 412 (1351)
Q Consensus 336 VILDvV~NH~~~~~~~~~-~~f~g~~~~y-y~~~~~~~~~~w~-~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a 412 (1351)
||||||||||+..++++. ..++...+.| |+.++.|...+.. ++..+.++++||++|+|+++||++||||||||||+|
T Consensus 482 VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlm 561 (970)
T PLN02877 482 VVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLM 561 (970)
T ss_pred EEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 999999999988765543 5677777644 4545556555432 456688999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhC--------CCeEEEEEcCC
Q psy9001 413 TSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY--------PEIITIAEDVS 468 (1351)
Q Consensus 413 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~--------P~~~~iaE~~~ 468 (1351)
.++. ...|+.++++++++. |.++++||.|.
T Consensus 562 g~i~--------------------------~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~ 599 (970)
T PLN02877 562 GHLM--------------------------KRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWD 599 (970)
T ss_pred cccc--------------------------HHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCC
Confidence 9871 234556666666663 88999999996
|
|
| >PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-45 Score=479.71 Aligned_cols=285 Identities=20% Similarity=0.239 Sum_probs=214.6
Q ss_pred ccccccCceeEEE-----EEEEEEEeecCCCCcc---ccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCC--
Q psy9001 61 LVDECHKAGLLCF-----MHVVCAAGDFNNWNRE---EFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHG-- 130 (1351)
Q Consensus 61 l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~~---~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g-- 130 (1351)
++....++||+|+ |++|.|+ .|++|+.. .++|....+|||+++|++..+| ++|+|++++..+
T Consensus 16 lGA~~~~~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g-------~~Ygyrv~g~~~p~ 87 (1221)
T PRK14510 16 LGAVPDGGGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPG-------ARYGNRQEGPGGPG 87 (1221)
T ss_pred CceEEECCeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCC-------cEEEEEeccCCCcc
Confidence 4455567899999 9999997 78888643 4677666789999999988766 599999986432
Q ss_pred --ce----eeccCCcceEEecCCC--Cccc-----------eeeeeeCCCC--CCCCccCCCCCC--CCCCceEEEEecC
Q psy9001 131 --HL----LDRLSPWATYVTEPPV--VGHA-----------YEQRIWNPKP--QDKHKWTSSKPK--KPDNLKIYESHVG 187 (1351)
Q Consensus 131 --~~----~~~~DPyA~~~~~~~~--~~~~-----------~~~~~~~p~~--~~~~~w~~~~p~--~~~~~vIYE~hvr 187 (1351)
.+ ...+||||+.+..+.. .++. .++.+..|++ .++|+|.+.+++ .+++++|||+|||
T Consensus 88 ~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~~~~~~~~~d~vIYE~hvr 167 (1221)
T PRK14510 88 EGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPRSPLHGDWDDSPLYEMNVR 167 (1221)
T ss_pred cccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCCCCCCCCcccCeEEEEccc
Confidence 21 3689999999987532 1110 1122233332 125899876653 5689999999999
Q ss_pred CccC------CCCCCCHHHHHH-hhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCcc
Q psy9001 188 ICTQ------EQKCASYEDFVR-VVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQA 260 (1351)
Q Consensus 188 ~ft~------~~~~G~~~gi~~-~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~ 260 (1351)
+||. ++.+|+|+++.+ ..|||||+||||+ |||||||++. .+.+..+ ....+
T Consensus 168 ~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~----I~L~Pi~~~~-----------~~~~~~~-------~g~~~ 225 (1221)
T PRK14510 168 GFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSI----VELNPIFASV-----------DEHHLPQ-------LGLSN 225 (1221)
T ss_pred hhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCE----EEeCCccccC-----------ccccccc-------ccCcC
Confidence 9974 345799999882 2499999999999 9999977531 1111111 12357
Q ss_pred ccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCC--CHHHHHHHHHHHHHcCCEEEE
Q psy9001 261 LVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDECHKAGLYVLL 338 (1351)
Q Consensus 261 ~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G--~~~efk~LV~~~H~~GI~VIL 338 (1351)
||||++.+|| +|+ |+|| +++|||+||++||++||+|||
T Consensus 226 yWGY~~~~yf---------------------a~d-------------------p~yg~~~~~efk~lV~~~H~~GI~VIL 265 (1221)
T PRK14510 226 YWGYNTVAFL---------------------APD-------------------PRLAPGGEEEFAQAIKEAQSAGIAVIL 265 (1221)
T ss_pred cCCCCCCCCC---------------------CcC-------------------hhhccCcHHHHHHHHHHHHHCCCEEEE
Confidence 8999999999 888 8888 999999999999999999999
Q ss_pred EeeccccccCCcCCc-ccCCCCC-CcCcccCC--CCCCCCCC--CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccc
Q psy9001 339 DVVHSHASKNVLDGL-NEFDGTQ-ACFFHDGP--RGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 412 (1351)
Q Consensus 339 DvV~NH~~~~~~~~~-~~f~g~~-~~yy~~~~--~~~~~~w~--~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a 412 (1351)
|||+|||+.++..+. ..+.+.+ +.||+..+ .+.+.+|. ++.+|+++|+|+++|+++++||++ |||||||||+|
T Consensus 266 DvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla 344 (1221)
T PRK14510 266 DVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK-RGVDGFRLDLA 344 (1221)
T ss_pred EEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hCCCEEEEech
Confidence 999999998865543 3455544 45666442 33455554 468999999999999999999999 99999999999
Q ss_pred cccc
Q psy9001 413 TSML 416 (1351)
Q Consensus 413 ~~~~ 416 (1351)
..|.
T Consensus 345 ~~l~ 348 (1221)
T PRK14510 345 DELA 348 (1221)
T ss_pred hhhc
Confidence 9884
|
|
| >PRK10785 maltodextrin glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=405.93 Aligned_cols=357 Identities=16% Similarity=0.174 Sum_probs=241.6
Q ss_pred EEEEEEEeecCCCCccccceeecC----CCeEEEEcCCC-CCCCcccCcccEEEEEEEecCCceeeccCCcceEEecCCC
Q psy9001 74 MHVVCAAGDFNNWNREEFAYKKLD----FGKWELVLPPN-PDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPV 148 (1351)
Q Consensus 74 A~~V~LvGDFN~Wd~~~~~M~k~~----~GvW~~~ip~~-~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~ 148 (1351)
+++|.|.-...+ .....+|++.. ...|++.|+-. ..+ -..|.|+|... ++..+. +.-...- ..+.
T Consensus 33 ~~~v~l~~~~~~-~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~F~l~~~-~~~~~~-~~~g~~~-~~~~ 102 (598)
T PRK10785 33 PQRVMLRCEPDN-EEYLLPMEKQRSQPQVTAWRASLPLNSGQP------RRRYSFKLLWH-DRQRWF-TPQGFSR-RPPA 102 (598)
T ss_pred eEEEEEEEEcCC-CEEEEEeEEeecCCCceEEEEEEEcCCCCc------eEEEEEEEEeC-CEEEEE-cCCceee-ccCC
Confidence 567888643322 12457888732 35799999743 222 24788888753 332221 1100000 0000
Q ss_pred CccceeeeeeCCCCCCCCccC--CCCCCCCCCceEEEEecCCccCC-------C--------------------------
Q psy9001 149 VGHAYEQRIWNPKPQDKHKWT--SSKPKKPDNLKIYESHVGICTQE-------Q-------------------------- 193 (1351)
Q Consensus 149 ~~~~~~~~~~~p~~~~~~~w~--~~~p~~~~~~vIYE~hvr~ft~~-------~-------------------------- 193 (1351)
+. ..|.+. ...|.+.++.||||+.+..|-.. .
T Consensus 103 ----------~~---~~f~~~~~~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 169 (598)
T PRK10785 103 ----------RL---EQFAVDVPDQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAG 169 (598)
T ss_pred ----------Cc---cceEeeCCCCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCcccccCcCCCcccccc
Confidence 00 012221 12344669999999999988311 0
Q ss_pred ----CCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccc
Q psy9001 194 ----KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAF 269 (1351)
Q Consensus 194 ----~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y 269 (1351)
.-|+|+||+++ |||||+||||+ |||+|||+ . ..+|||++.||
T Consensus 170 ~~~f~GGDl~GI~~k-LdYL~~LGv~~----I~L~Pif~--------------------s---------~s~hgYd~~Dy 215 (598)
T PRK10785 170 GSTFYGGDLDGISEK-LPYLKKLGVTA----LYLNPIFT--------------------A---------PSVHKYDTEDY 215 (598)
T ss_pred cccccCcCHHHHHHH-HHHHHHcCCCE----EEeCCccc--------------------C---------CCCCCcCcccc
Confidence 03899999999 99999999999 99999663 1 12489999999
Q ss_pred cccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCC
Q psy9001 270 WLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV 349 (1351)
Q Consensus 270 ~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~ 349 (1351)
+ +++ |+||+.++|++||++||++||+||||+|+|||+.++
T Consensus 216 ~---------------------~iD-------------------p~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~ 255 (598)
T PRK10785 216 R---------------------HVD-------------------PQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSH 255 (598)
T ss_pred c---------------------ccC-------------------cccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCC
Confidence 9 666 999999999999999999999999999999999987
Q ss_pred cCCccc-------CCCCCC---cCcccCCCCCCCCCCC----ccCCCCCHHHHHHHHH----HHHHHHHH-cCCCccccc
Q psy9001 350 LDGLNE-------FDGTQA---CFFHDGPRGTHPLWDS----RLFNYSEIEVLRFLLS----NLRWYLDE-YQFDGFRFD 410 (1351)
Q Consensus 350 ~~~~~~-------f~g~~~---~yy~~~~~~~~~~w~~----~~ln~~~p~v~~~l~~----~l~~W~~e-~~vDGfR~D 410 (1351)
.+.... +....+ .||...+.+.+..|.+ ++||++||+|+++|++ +++||+++ |||||||+|
T Consensus 256 ~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlD 335 (598)
T PRK10785 256 PWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLD 335 (598)
T ss_pred HHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEe
Confidence 553211 111122 3555444555666754 5899999999999995 89999997 999999999
Q ss_pred cccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCC----------------------
Q psy9001 411 GVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVS---------------------- 468 (1351)
Q Consensus 411 ~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~---------------------- 468 (1351)
+|..+... .+ ......||+++++++++.+|++++|||.|.
T Consensus 336 va~~v~~~-----~~-------------~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~~~l~~~~~d~~mny~~f~~ 397 (598)
T PRK10785 336 VVHMLGEG-----GG-------------ARNNLQHVAGITQAAKEENPEAYVLGEHFGDARQWLQADVEDAAMNYRGFAF 397 (598)
T ss_pred cHhHhccc-----cC-------------ccccHHHHHHHHHHHHhhCCCeEEEEeccCChhhhccCccccccccchhhhh
Confidence 99876211 00 112457899999999999999999999652
Q ss_pred ----------------------------------------------------------------------------CCCC
Q psy9001 469 ----------------------------------------------------------------------------GMPA 472 (1351)
Q Consensus 469 ----------------------------------------------------------------------------~~p~ 472 (1351)
|.|.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP~ 477 (598)
T PRK10785 398 PLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPHQQQLRQFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVPC 477 (598)
T ss_pred HHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCHHHHHHhhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCcE
Confidence 3333
Q ss_pred cccccccCCCC---CCCcCC--cCCCCCCCcHHHHHHHHHHhhhcccccccCCcceEeecCCCcEEEEEeC----ceEEE
Q psy9001 473 SCRPVTEGGTG---FDYRLE--IRPDMSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERA----GLLFA 543 (1351)
Q Consensus 473 ~~~~~~~gg~g---fd~~~~--~~~d~~~~sl~~f~k~L~~Lr~~~~~L~~g~~~~~~~~~~~~Vlaf~R~----~ll~v 543 (1351)
|+++.|.|-.| .+.+-. |.....+.++++|+|+|++||+++++|+.|. +..+. .+++|++|.|. .++||
T Consensus 478 IYYGdE~G~~g~~dp~~R~~m~W~~~~~~~~l~~~~r~Li~lRk~~~aL~~G~-~~~l~-~~~~v~af~R~~~~~~vlVv 555 (598)
T PRK10785 478 IYYGDEVGLDGGNDPFCRKPFPWDEAKQDGALLALYQRMIALRKKSQALRRGG-CQVLY-AEGNVVVFARVLQQQRVLVA 555 (598)
T ss_pred EEeeeeccccCCCCCCccCCcCCCcccCchHHHHHHHHHHHHHhhCcccccCc-EEEEE-eCCCEEEEEEECCCCEEEEE
Confidence 33333332111 111111 2211134578999999999999999999984 34333 34679999995 79999
Q ss_pred EeCC
Q psy9001 544 FNFN 547 (1351)
Q Consensus 544 ~Nf~ 547 (1351)
+|++
T Consensus 556 iN~s 559 (598)
T PRK10785 556 INRG 559 (598)
T ss_pred EECC
Confidence 9998
|
|
| >TIGR02456 treS_nterm trehalose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=387.72 Aligned_cols=204 Identities=22% Similarity=0.298 Sum_probs=152.1
Q ss_pred CCCCceEEEEecCCccCC--CCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccccc
Q psy9001 175 KPDNLKIYESHVGICTQE--QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVA 252 (1351)
Q Consensus 175 ~~~~~vIYE~hvr~ft~~--~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~ 252 (1351)
++++++|||++|++|+.. +..|+|+|++++ ||||++||||+ |||+|||+ . +
T Consensus 2 W~~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~-Ldyl~~LGv~~----i~L~Pi~~--------------------~--~ 54 (539)
T TIGR02456 2 WYKDAVFYEVHVRSFFDSNGDGIGDFPGLTSK-LDYLKWLGVDA----LWLLPFFQ--------------------S--P 54 (539)
T ss_pred ccccceEEEEehhHhhcCCCCCccCHHHHHHh-HHHHHHCCCCE----EEECCCcC--------------------C--C
Confidence 468999999999999643 458999999999 99999999999 99999553 2 1
Q ss_pred ccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHc
Q psy9001 253 YAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 332 (1351)
Q Consensus 253 ~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~ 332 (1351)
+.+|||++.||+ +++ |+||+.++||+||++||++
T Consensus 55 ------~~~~gY~~~dy~---------------------~vd-------------------~~~Gt~~df~~Lv~~ah~~ 88 (539)
T TIGR02456 55 ------LRDDGYDVSDYR---------------------AIL-------------------PEFGTIDDFKDFVDEAHAR 88 (539)
T ss_pred ------CCCCCCCccccc---------------------ccC-------------------hhhCCHHHHHHHHHHHHHC
Confidence 234899999999 666 9999999999999999999
Q ss_pred CCEEEEEeeccccccCCcCCcccCC---CCCCcCcccCC-C------------CCCCCCC----------------CccC
Q psy9001 333 GLYVLLDVVHSHASKNVLDGLNEFD---GTQACFFHDGP-R------------GTHPLWD----------------SRLF 380 (1351)
Q Consensus 333 GI~VILDvV~NH~~~~~~~~~~~f~---g~~~~yy~~~~-~------------~~~~~w~----------------~~~l 380 (1351)
||+||||+|+||++.++++...... +....||.... . .....|. .++|
T Consensus 89 Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdl 168 (539)
T TIGR02456 89 GMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDL 168 (539)
T ss_pred CCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccCCCCcc
Confidence 9999999999999998765422111 11122332110 0 0111231 3589
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccC-chHHHHHHHHHHHHHhhCCC
Q psy9001 381 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDKYPE 459 (1351)
Q Consensus 381 n~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~f~~~~~~~v~~~~P~ 459 (1351)
|+++|+||++|++++++|++ +||||||||++..|.....+ . ..+ .+..+||+++++.+++.+|+
T Consensus 169 n~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~---~-----------~~~~p~~~~f~~~~~~~v~~~~p~ 233 (539)
T TIGR02456 169 NYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGT---S-----------CENLPETHEFLKRLRKMVDREYPG 233 (539)
T ss_pred CCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCC---c-----------cCCCchHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998 89999999999887321100 0 011 12356777777777777777
Q ss_pred eEEEEEc
Q psy9001 460 IITIAED 466 (1351)
Q Consensus 460 ~~~iaE~ 466 (1351)
+++|||.
T Consensus 234 ~~~iaE~ 240 (539)
T TIGR02456 234 RMLLAEA 240 (539)
T ss_pred eEEEEEe
Confidence 7777774
|
Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530). |
| >TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=377.52 Aligned_cols=211 Identities=20% Similarity=0.265 Sum_probs=152.5
Q ss_pred CCCCceEEEEecCCccC--CCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccccc
Q psy9001 175 KPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVA 252 (1351)
Q Consensus 175 ~~~~~vIYE~hvr~ft~--~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~ 252 (1351)
++++.+|||+|+++|+. .+..|+|+|++++ ||||++||||+ |||+|||+ . +
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~-l~yl~~lG~~~----i~l~Pi~~--------------------~--~ 53 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTGDGTGDLRGIIEK-LDYLKKLGVDY----IWLNPFYV--------------------S--P 53 (543)
T ss_pred CcccCEEEEEEhHHHhcCCCCCccCHHHHHHh-HHHHHHcCCCE----EEECCccc--------------------C--C
Confidence 46889999999999964 4568999999998 99999999999 99999663 2 1
Q ss_pred ccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHc
Q psy9001 253 YAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 332 (1351)
Q Consensus 253 ~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~ 332 (1351)
.+.+||++.||+ +++ |+||+.++|++||++||++
T Consensus 54 ------~~~~gY~~~d~~---------------------~id-------------------~~~Gt~~~~~~lv~~ah~~ 87 (543)
T TIGR02403 54 ------QKDNGYDVSDYY---------------------AIN-------------------PLFGTMADFEELVSEAKKR 87 (543)
T ss_pred ------CCCCCCCccccC---------------------ccC-------------------cccCCHHHHHHHHHHHHHC
Confidence 123799999999 666 9999999999999999999
Q ss_pred CCEEEEEeeccccccCCcCCcccCCC--CCCcCcc-cCCCCCC-CC---------CC----------------CccCCCC
Q psy9001 333 GLYVLLDVVHSHASKNVLDGLNEFDG--TQACFFH-DGPRGTH-PL---------WD----------------SRLFNYS 383 (1351)
Q Consensus 333 GI~VILDvV~NH~~~~~~~~~~~f~g--~~~~yy~-~~~~~~~-~~---------w~----------------~~~ln~~ 383 (1351)
||+||||+|+|||+.++.|......+ .-..||. .++.+.. .+ |. .++||+.
T Consensus 88 gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~ 167 (543)
T TIGR02403 88 NIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWE 167 (543)
T ss_pred CCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCCccCCC
Confidence 99999999999999987654322222 1112331 1111110 01 21 3589999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCc----cccCCCccCchHHHHHHHHHHHHHhhCCC
Q psy9001 384 EIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY----DEYFGLNVDTDALIYLMVANKFLHDKYPE 459 (1351)
Q Consensus 384 ~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~----~~~~~~~~~~~~~~f~~~~~~~v~~~~P~ 459 (1351)
||+|+++|+++++||++ +||||||||+|.+|..... +.... ..++. ...+..+||+++++.+++ .|+
T Consensus 168 np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~-----~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~-~~~ 238 (543)
T TIGR02403 168 NPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQF-----FEDDEIGDGRRFYT--DGPRVHEYLQEMNQEVFG-DND 238 (543)
T ss_pred CHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcc-----cCCCCCCCCccccC--CChHHHHHHHHHHHHhhc-cCC
Confidence 99999999999999997 7999999999998842210 11000 00000 112345677777777766 677
Q ss_pred eEEEEEcC
Q psy9001 460 IITIAEDV 467 (1351)
Q Consensus 460 ~~~iaE~~ 467 (1351)
+++|||.|
T Consensus 239 ~~lvgE~~ 246 (543)
T TIGR02403 239 SVTVGEMS 246 (543)
T ss_pred eEEEEEeC
Confidence 77777754
|
Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. |
| >PRK10933 trehalose-6-phosphate hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=369.66 Aligned_cols=172 Identities=20% Similarity=0.244 Sum_probs=135.3
Q ss_pred CCCCCCCceEEEEecCCccC--CCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccc
Q psy9001 172 KPKKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEK 249 (1351)
Q Consensus 172 ~p~~~~~~vIYE~hvr~ft~--~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~ 249 (1351)
.|.++++.||||+++++|.. .+..|+|+|++++ ||||++||||+ |||+|||+ .
T Consensus 4 ~~~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~-ldyl~~lGv~~----i~l~P~~~--------------------~ 58 (551)
T PRK10933 4 LPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQR-LDYLQKLGVDA----IWLTPFYV--------------------S 58 (551)
T ss_pred cchhhhcCeEEEEEchHhhcCCCCCCcCHHHHHHh-hHHHHhCCCCE----EEECCCCC--------------------C
Confidence 35578999999999999963 4568999999999 99999999999 99999553 1
Q ss_pred cccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHH
Q psy9001 250 TVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 329 (1351)
Q Consensus 250 ~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~ 329 (1351)
+ +..|||++.||+ +++ |+|||.+||++||++|
T Consensus 59 --~------~~~~gY~~~d~~---------------------~id-------------------~~~Gt~~d~~~lv~~~ 90 (551)
T PRK10933 59 --P------QVDNGYDVANYT---------------------AID-------------------PTYGTLDDFDELVAQA 90 (551)
T ss_pred --C------CCCCCCCcccCC---------------------CcC-------------------cccCCHHHHHHHHHHH
Confidence 1 223899999999 666 9999999999999999
Q ss_pred HHcCCEEEEEeeccccccCCcCCcccCCCCCC--cCcc--cC-----CCCCC-----CC--CC--------------Ccc
Q psy9001 330 HKAGLYVLLDVVHSHASKNVLDGLNEFDGTQA--CFFH--DG-----PRGTH-----PL--WD--------------SRL 379 (1351)
Q Consensus 330 H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~--~yy~--~~-----~~~~~-----~~--w~--------------~~~ 379 (1351)
|++||+||||+|+||++.+++|.........+ .||. .. +.... .. |. .++
T Consensus 91 h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pd 170 (551)
T PRK10933 91 KSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQAD 170 (551)
T ss_pred HHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeecccccCCc
Confidence 99999999999999999988664332221111 2331 11 00000 00 11 358
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccccc
Q psy9001 380 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLY 417 (1351)
Q Consensus 380 ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~ 417 (1351)
||+.||+||++|+++++||++ +||||||+|+|.+|..
T Consensus 171 Ln~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~ 207 (551)
T PRK10933 171 LNWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISK 207 (551)
T ss_pred cCCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCc
Confidence 999999999999999999996 9999999999999853
|
|
| >PRK10785 maltodextrin glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=377.91 Aligned_cols=280 Identities=15% Similarity=0.176 Sum_probs=185.4
Q ss_pred CCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCC-----------CCCCC
Q psy9001 1007 LDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-----------DGTQA 1074 (1351)
Q Consensus 1007 ~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~-----------dg~~~ 1074 (1351)
+|+|.++++||| ++||++|||+|||.+|||+||++||++||+||||+|+|||+.+|. ++... ++...
T Consensus 199 ~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~-~f~~~~~~~~ga~~~~~spy~ 277 (598)
T PRK10785 199 NPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHP-WFDRHNRGTGGACHHPDSPWR 277 (598)
T ss_pred CCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCH-HHHHhhccccccccCCCCCcc
Confidence 344566788999 999999999999999999999999999999999999999999873 22111 12223
Q ss_pred ccccCCCCCCCCCCC----CCCCCCCCHHHHHHHHH----HHHHHHHH-hCCCeEEEcCcccccccCCCCCCCCCCCccc
Q psy9001 1075 CFFHDGPRGTHPLWD----SRLFNYSEIEVLRFLLS----NLRWYLEE-YQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 1145 (1351)
Q Consensus 1075 ~yf~~~~~g~~~~w~----~~dlN~~np~Vr~~lid----~l~yWl~e-ygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~ 1145 (1351)
.||.....+....|. ..+||++||+||++|++ +++||+++ |||||||+|+|..+....
T Consensus 278 dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~------------- 344 (598)
T PRK10785 278 DWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGG------------- 344 (598)
T ss_pred eeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhcccc-------------
Confidence 466544445455553 35899999999999995 79999997 999999999998763110
Q ss_pred ccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHh
Q psy9001 1146 YFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKV 1225 (1351)
Q Consensus 1146 ~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd 1225 (1351)
.......||+++++.+++.+|++++|||.|.... .+.. |.+||..++- . .+...++.
T Consensus 345 -----~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~----~~l~-~~~~d~~mny---------~----~f~~~~~~ 401 (598)
T PRK10785 345 -----GARNNLQHVAGITQAAKEENPEAYVLGEHFGDAR----QWLQ-ADVEDAAMNY---------R----GFAFPLRA 401 (598)
T ss_pred -----CccccHHHHHHHHHHHHhhCCCeEEEEeccCChh----hhcc-Cccccccccc---------h----hhhhHHHH
Confidence 0123578999999999999999999999885422 1211 2222211110 0 01112233
Q ss_pred hhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccC--CHHHHHHHH
Q psy9001 1226 VLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI--QTESNMNGF 1303 (1351)
Q Consensus 1226 ~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~--~~~~~r~A~ 1303 (1351)
.+...+..+ ..... .. ..+...........|...... .+||++|||+.|. ...+ ..+++|+|+
T Consensus 402 ~~~~~~~~~---~~~~~----~~--~~~~~~l~~~~~~~~~~~~~~-~~n~l~nHD~~R~-----~~~~~~~~~~~kla~ 466 (598)
T PRK10785 402 FLANTDIAY---HPQQI----DA--QTCAAWMDEYRAGLPHQQQLR-QFNQLDSHDTARF-----KTLLGGDKARMPLAL 466 (598)
T ss_pred Hhhcccccc---CccCC----CH--HHHHHHHHHHHHhCCHHHHHH-hhhccCCCccchh-----hhhhCCCHHHHHHHH
Confidence 331110000 00000 00 000000000000112211111 1699999999753 2222 346789999
Q ss_pred HHHHccCCccEEEee-cccCCCCccceeeccCCcce
Q psy9001 1304 GIQTLPTQSPLYLVA-KIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1304 allltspGiP~If~g-~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
+++||+||+||||+| |+...+.....+|.||||.-
T Consensus 467 ~ll~t~pGiP~IYYGdE~G~~g~~dp~~R~~m~W~~ 502 (598)
T PRK10785 467 VWLFTWPGVPCIYYGDEVGLDGGNDPFCRKPFPWDE 502 (598)
T ss_pred HHHHhCCCCcEEEeeeeccccCCCCCCccCCcCCCc
Confidence 999999999999999 99999988899999999974
|
|
| >TIGR02456 treS_nterm trehalose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=364.11 Aligned_cols=325 Identities=20% Similarity=0.225 Sum_probs=203.0
Q ss_pred CCceEEEeecCCcccCCCcccccccccccccceeccCCCcccccccccccccCC-ceEEEecCCCCCCCCcccccCccce
Q psy9001 889 ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDF-GKWELVLPPNPDGDFNNWNREEFAY 967 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~-giwel~ip~~~~g~~Y~~~~~~~~y 967 (1351)
+++||||++|+.|+..... ..|+|+++..++++|+++|+ +||...
T Consensus 4 ~~~viYqi~~~~f~d~~~~---------------~~Gdl~gi~~~Ldyl~~LGv~~i~L~P------------------- 49 (539)
T TIGR02456 4 KDAVFYEVHVRSFFDSNGD---------------GIGDFPGLTSKLDYLKWLGVDALWLLP------------------- 49 (539)
T ss_pred ccceEEEEehhHhhcCCCC---------------CccCHHHHHHhHHHHHHCCCCEEEECC-------------------
Confidence 5899999999999854321 13667777777777777665 344332
Q ss_pred ecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCc-ccccc-ccccccccCCCCCHHHHHHHHHHHHHc
Q psy9001 968 KKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTP-EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKA 1045 (1351)
Q Consensus 968 ~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp-~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~ 1045 (1351)
.+.++ .+||| +.||++|+|+|||.+|||+||++||++
T Consensus 50 -----------------------------------------i~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~ 88 (539)
T TIGR02456 50 -----------------------------------------FFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHAR 88 (539)
T ss_pred -----------------------------------------CcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHC
Confidence 22233 25899 999999999999999999999999999
Q ss_pred CCEEEEEeecccccCCcccc---CcCCCCCCCccccCCCC-------------CCCCCC----------------CCCCC
Q psy9001 1046 GLYVLLDVVHSHASKNVLDG---LNEFDGTQACFFHDGPR-------------GTHPLW----------------DSRLF 1093 (1351)
Q Consensus 1046 GI~VILDVV~NHts~~~~~~---l~~~dg~~~~yf~~~~~-------------g~~~~w----------------~~~dl 1093 (1351)
||+||||+|+||++.+|... +...++....||..... .....| +..+|
T Consensus 89 Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdl 168 (539)
T TIGR02456 89 GMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDL 168 (539)
T ss_pred CCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccCCCCcc
Confidence 99999999999999987321 11112222334431100 011223 13489
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCe
Q psy9001 1094 NYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEI 1173 (1351)
Q Consensus 1094 N~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ 1173 (1351)
|++||+||++|+++++||++ +||||||||++.+|.+...+.. ..-.+...||+++++.+++.+|++
T Consensus 169 n~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~-------------~~~p~~~~f~~~~~~~v~~~~p~~ 234 (539)
T TIGR02456 169 NYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSC-------------ENLPETHEFLKRLRKMVDREYPGR 234 (539)
T ss_pred CCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCcc-------------CCCchHHHHHHHHHHHHHHhCCCe
Confidence 99999999999999999998 7999999999998853221100 011346889999999999999999
Q ss_pred EEEEccCCCCCCcccccccCCc-ccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCC
Q psy9001 1174 ITIAEDVSGMPASCRPVTEGGT-GFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEP 1252 (1351)
Q Consensus 1174 ilIaE~~~~~p~~~~p~~~gg~-GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~ 1252 (1351)
++|||.+.....+...+...+. +++..+ +|+.....+ ..+.. .....+... .
T Consensus 235 ~~iaE~~~~~~~~~~y~~~~~~~~~d~~f---------~f~l~~~~~-----~~l~~-----~~~~~l~~~----l---- 287 (539)
T TIGR02456 235 MLLAEANQWPEEVVAYFGDEGDPECHMAF---------NFPVMPRIF-----MALRR-----EDRSPIIDI----L---- 287 (539)
T ss_pred EEEEEeCCCHHHHHHhhCCCCCCeeeeEE---------Chhhhhhhh-----ccccc-----CCHHHHHHH----H----
Confidence 9999975322222222221111 333211 122110000 00000 000000000 0
Q ss_pred cccccCccccccCCCCccceeeecccCCCCCcCC--------------------------cccccccCC--HHHHHHHHH
Q psy9001 1253 WNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNN--------------------------ENNMKRYIQ--TESNMNGFG 1304 (1351)
Q Consensus 1253 ~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~--------------------------~~r~~~~~~--~~~~r~A~a 1304 (1351)
.+ ... .|... ..++|++|||+.+.. ..|+..... .+++++|++
T Consensus 288 --~~---~~~-~~~~~---~~~~fl~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~ 358 (539)
T TIGR02456 288 --KE---TPD-IPDSC---QWCIFLRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTA 358 (539)
T ss_pred --HH---hhh-ccCCC---ceeeecCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHH
Confidence 00 000 11111 115789999985420 023333332 357899999
Q ss_pred HHHccCCccEEEee-cccCCCC----ccceeeccCCcce
Q psy9001 1305 IQTLPTQSPLYLVA-KIEKPCS----TREVVKAPLPFGV 1338 (1351)
Q Consensus 1305 llltspGiP~If~g-~~~~~~~----~~~~~~~p~~~~~ 1338 (1351)
++||+||+|+||+| |+...+. .+..+|.||||.-
T Consensus 359 ~l~tlpG~P~IYYG~EiGm~~~~~~~~~~~~R~pm~W~~ 397 (539)
T TIGR02456 359 LLLSLPGSPILYYGDEIGMGDNIWLGDRNGVRTPMQWSP 397 (539)
T ss_pred HHHhCCCceEEEechhhcCcCCCccCCCcCccCCcCcCC
Confidence 99999999999999 7776642 3456789999974
|
Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530). |
| >TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=353.40 Aligned_cols=165 Identities=22% Similarity=0.273 Sum_probs=118.6
Q ss_pred cccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc---CcCCCCCCCcccc-CCCCCC-CCC-
Q psy9001 1015 QLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG---LNEFDGTQACFFH-DGPRGT-HPL- 1087 (1351)
Q Consensus 1015 ~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~---l~~~dg~~~~yf~-~~~~g~-~~~- 1087 (1351)
.+|| +.||+.|||+|||.+||++||++||++||+||||+|+|||+.+|... ... ++....||. .++.+. ..+
T Consensus 56 ~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~-~~~y~~~y~~~~~~~~~~~~~ 134 (543)
T TIGR02403 56 DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAG-DSPYRDFYIWRDPKGKPPTNW 134 (543)
T ss_pred CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccccccchHHHHHhhcC-CCcccCceEecCCCCCCCCcc
Confidence 4689 89999999999999999999999999999999999999999988321 112 333334442 111111 111
Q ss_pred --------C----------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCc
Q psy9001 1088 --------W----------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY 1143 (1351)
Q Consensus 1088 --------w----------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~ 1143 (1351)
| +..+||++||+||++|+++++||++ +||||||||+|.+|.+.......... -
T Consensus 135 ~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~~~~~~~~--~ 211 (543)
T TIGR02403 135 QSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQFFEDDEIG--D 211 (543)
T ss_pred cccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcccCCCCCC--C
Confidence 2 1348999999999999999999997 59999999999998543211110000 0
Q ss_pred ccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCC
Q psy9001 1144 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPA 1185 (1351)
Q Consensus 1144 ~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~ 1185 (1351)
...|- .+......||+++++.++. .|++++|||.|...+.
T Consensus 212 ~~~~~-~~~~~~~~f~~~~~~~~~~-~~~~~lvgE~~~~~~~ 251 (543)
T TIGR02403 212 GRRFY-TDGPRVHEYLQEMNQEVFG-DNDSVTVGEMSSTTIE 251 (543)
T ss_pred Ccccc-CCChHHHHHHHHHHHHhhc-cCCeEEEEEeCCCCHH
Confidence 00010 1234578899999999988 8999999999865443
|
Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. |
| >PRK09441 cytoplasmic alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=327.77 Aligned_cols=188 Identities=21% Similarity=0.328 Sum_probs=135.5
Q ss_pred CCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchh
Q psy9001 196 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 275 (1351)
Q Consensus 196 G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e 275 (1351)
-+|++|+++ ||||++||||+ |||+|+|+ . + | ...+|||++.|||
T Consensus 19 ~~~~~I~~k-ldyl~~LGvta----Iwl~P~~~--------------------~--~---~-~~~~hgY~~~D~~----- 62 (479)
T PRK09441 19 KLWNRLAER-APELAEAGITA----VWLPPAYK--------------------G--T---S-GGYDVGYGVYDLF----- 62 (479)
T ss_pred cHHHHHHHH-HHHHHHcCCCE----EEeCCCcc--------------------C--C---C-CCCCCCCCeeccc-----
Confidence 467899999 99999999999 99999553 2 1 0 1345999999999
Q ss_pred hhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCc--CCc
Q psy9001 276 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL--DGL 353 (1351)
Q Consensus 276 ~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~--~~~ 353 (1351)
... .|... -.|||+|||.+|||+||++||++||+||||+|+||++.... +..
T Consensus 63 ----------------~~~-~~~~~---------~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~ 116 (479)
T PRK09441 63 ----------------DLG-EFDQK---------GTVRTKYGTKEELLNAIDALHENGIKVYADVVLNHKAGADEKETFR 116 (479)
T ss_pred ----------------ccc-ccccc---------CCcCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccCCCcceeee
Confidence 222 00000 03669999999999999999999999999999999985422 110
Q ss_pred ----------------------ccC--CCCCC-------cCcccCCC---------------CCCCCCC-----------
Q psy9001 354 ----------------------NEF--DGTQA-------CFFHDGPR---------------GTHPLWD----------- 376 (1351)
Q Consensus 354 ----------------------~~f--~g~~~-------~yy~~~~~---------------~~~~~w~----------- 376 (1351)
..| .+..+ .|++..+. +....|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 196 (479)
T PRK09441 117 VVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFD 196 (479)
T ss_pred eeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEecCCCCCCccccccccCCcc
Confidence 000 11100 12211110 0112342
Q ss_pred ---CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHH
Q psy9001 377 ---SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFL 453 (1351)
Q Consensus 377 ---~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v 453 (1351)
.++||++||+|+++|++++++|++++||||||+|+|.+| ...||+.+.+.+
T Consensus 197 ~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v--------------------------~~~f~~~~~~~~ 250 (479)
T PRK09441 197 YLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHI--------------------------DAWFIKEWIEHV 250 (479)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCC--------------------------CHHHHHHHHHHH
Confidence 358999999999999999999999999999999999988 235778888887
Q ss_pred HhhC-CCeEEEEEcCCCCC
Q psy9001 454 HDKY-PEIITIAEDVSGMP 471 (1351)
Q Consensus 454 ~~~~-P~~~~iaE~~~~~p 471 (1351)
++.. |+++++||.|.+.|
T Consensus 251 ~~~~~~~~~~vGE~~~~~~ 269 (479)
T PRK09441 251 REVAGKDLFIVGEYWSHDV 269 (479)
T ss_pred HHhcCCCeEEEEeecCCCh
Confidence 7665 68888888876654
|
|
| >PRK09505 malS alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=337.63 Aligned_cols=312 Identities=15% Similarity=0.175 Sum_probs=186.3
Q ss_pred CCCCCCCceEEEEecCCccCCC------------C--------CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccc
Q psy9001 172 KPKKPDNLKIYESHVGICTQEQ------------K--------CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDED 231 (1351)
Q Consensus 172 ~p~~~~~~vIYE~hvr~ft~~~------------~--------~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~ 231 (1351)
.|..|++.+||++.+..|...+ . -|+|+||+++ ||||++||||+ |||+|||+..
T Consensus 183 ~~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~k-Ldyl~~LGv~a----IwlsPi~~~~- 256 (683)
T PRK09505 183 APFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEK-LDYLQQLGVNA----LWISSPLEQI- 256 (683)
T ss_pred CChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHh-hHHHHHcCCCE----EEeCcccccc-
Confidence 3457899999999999994211 1 2899999999 99999999999 9999977410
Q ss_pred cCccceEEEccccccccccccccCCC-CccccCcccccccccchhhhcccccCCCCchhcccccccCCCCcccccccccc
Q psy9001 232 WNMGNIVHTLTNRRYMEKTVAYAESH-DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDEC 310 (1351)
Q Consensus 232 ~~~~~ii~~~~~~~~~e~~~~~~~s~-~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~ 310 (1351)
+.. +. . ...++. ...++||++.||+ .++
T Consensus 257 -------~~~----~~-~--g~~g~~~~~~yhgY~~~D~~---------------------~id---------------- 285 (683)
T PRK09505 257 -------HGW----VG-G--GTKGDFPHYAYHGYYTLDWT---------------------KLD---------------- 285 (683)
T ss_pred -------ccc----cc-c--ccccCCCcCCCCCCCccccc---------------------cCC----------------
Confidence 000 00 0 001110 1245788887777 555
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCC-----cCCccc-C-------CCCCCcC----------cc--
Q psy9001 311 HKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV-----LDGLNE-F-------DGTQACF----------FH-- 365 (1351)
Q Consensus 311 ~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~-----~~~~~~-f-------~g~~~~y----------y~-- 365 (1351)
++||+.+|||+||++||++||+||||+|+||++... .+.... + .+....| ++
T Consensus 286 ---~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 362 (683)
T PRK09505 286 ---ANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQPAAGQNWHSF 362 (683)
T ss_pred ---CCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhccccccccCccccccccccccccccc
Confidence 999999999999999999999999999999999431 000000 0 0000111 00
Q ss_pred -----cCCCCCCCCC-C-------------------------CccCCCC-----------------------CHHHHHHH
Q psy9001 366 -----DGPRGTHPLW-D-------------------------SRLFNYS-----------------------EIEVLRFL 391 (1351)
Q Consensus 366 -----~~~~~~~~~w-~-------------------------~~~ln~~-----------------------~p~v~~~l 391 (1351)
.........| + -++||++ ||+||++|
T Consensus 363 ~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL 442 (683)
T PRK09505 363 NDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAIDGYTPRDYL 442 (683)
T ss_pred ccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccccCHHHHHHH
Confidence 0000111111 1 1234443 56999999
Q ss_pred HHHHHHHHHHcCCCccccccccccccc-------------------c----------CCCCCCCCCCc--cccCC----C
Q psy9001 392 LSNLRWYLDEYQFDGFRFDGVTSMLYH-------------------N----------HGCGEGFSGHY--DEYFG----L 436 (1351)
Q Consensus 392 ~~~l~~W~~e~~vDGfR~D~a~~~~~~-------------------~----------~~~~~~f~~~~--~~~~~----~ 436 (1351)
++++++|++++||||||+|+|.+|-.. . .-+++-|.... ..+++ .
T Consensus 443 ~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~~~y~~~~fDs 522 (683)
T PRK09505 443 THWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDKALDDAPFWMTGEAWGHGVMKSDYYRHGFDA 522 (683)
T ss_pred HHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccccccccCCeEEEEEecCCchhhHHHHhhcCcc
Confidence 999999999999999999999988310 0 00112221110 01111 1
Q ss_pred ccCch-------HHHHHHHHHHH---HHhhCCCeEEE---------------EEc------------CCCCCCccccccc
Q psy9001 437 NVDTD-------ALIYLMVANKF---LHDKYPEIITI---------------AED------------VSGMPASCRPVTE 479 (1351)
Q Consensus 437 ~~~~~-------~~~f~~~~~~~---v~~~~P~~~~i---------------aE~------------~~~~p~~~~~~~~ 479 (1351)
-.|.+ ....+..+... +....++..++ .+. .+|.|.|+++.|.
T Consensus 523 v~NF~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~FLdNHDt~Rf~s~~~~~~~~klAaall~tlpGiP~IYYGdEi 602 (683)
T PRK09505 523 MINFDYQEQAAKAVDCLAQMDPTYQQMAEKLQDFNVLSYLSSHDTRLFFEGGQSYAKQRRAAELLLLAPGAVQIYYGDES 602 (683)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeecccCCChhhhhhhcCchHHHHHHHHHHHhCCCCcEEEechhh
Confidence 11110 00111111111 11111111111 110 1699999999998
Q ss_pred CCCC----CC----CcCC--cCC-CCCCCcHHHHHHHHHHhhhcccccccCCcceEeecCCCcEEEEEeC----ceEEEE
Q psy9001 480 GGTG----FD----YRLE--IRP-DMSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERA----GLLFAF 544 (1351)
Q Consensus 480 gg~g----fd----~~~~--~~~-d~~~~sl~~f~k~L~~Lr~~~~~L~~g~~~~~~~~~~~~Vlaf~R~----~ll~v~ 544 (1351)
|-.| -| .|-. |.. .....+|++|+|+|++||+++|+|+.|. +..+. .+++++|.|. .+|||+
T Consensus 603 Gm~gg~~g~DP~~~~R~~M~W~~~~~~~~~Ll~~~kkLi~LRk~~pAL~~G~-~~~l~--~~~~~aF~R~~~~d~vlVv~ 679 (683)
T PRK09505 603 ARPFGPTGSDPLQGTRSDMNWQEVSGKSAALLAHWQKLGQFRARHPAIGAGK-QTTLS--LKQYYAFVREHGDDKVMVVW 679 (683)
T ss_pred CccCCCCCCCCcccccccCCccccccchHHHHHHHHHHHHHHhhCHHhhCCc-eEEec--cCCEEEEEEEeCCCEEEEEE
Confidence 7322 12 2222 432 1134579999999999999999999984 34332 4579999995 799998
Q ss_pred eC
Q psy9001 545 NF 546 (1351)
Q Consensus 545 Nf 546 (1351)
|=
T Consensus 680 ~~ 681 (683)
T PRK09505 680 AG 681 (683)
T ss_pred eC
Confidence 83
|
|
| >PRK10933 trehalose-6-phosphate hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-32 Score=336.91 Aligned_cols=162 Identities=20% Similarity=0.282 Sum_probs=113.5
Q ss_pred cccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCC--CCCCCcccc--CC-----CCCC
Q psy9001 1015 QLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF--DGTQACFFH--DG-----PRGT 1084 (1351)
Q Consensus 1015 ~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~--dg~~~~yf~--~~-----~~g~ 1084 (1351)
.||| +.||+.|||+|||.+|||+||++||++||+||||+|+||++..|....... +.....||. .+ +...
T Consensus 62 ~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~ 141 (551)
T PRK10933 62 DNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNW 141 (551)
T ss_pred CCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcc
Confidence 5789 899999999999999999999999999999999999999999874321111 112223332 11 0000
Q ss_pred C-----CC--C--------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCc
Q psy9001 1085 H-----PL--W--------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY 1143 (1351)
Q Consensus 1085 ~-----~~--w--------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~ 1143 (1351)
. +. | +..+||++||+||++|+++++||++ +||||||||+|.+|.+.. +|+...
T Consensus 142 ~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~~~-----~~~~~~ 215 (551)
T PRK10933 142 RSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISKDQ-----DFPDDL 215 (551)
T ss_pred cccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCcCC-----CCCCCc
Confidence 0 01 1 1348999999999999999999995 799999999999996431 121100
Q ss_pred ---ccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCC
Q psy9001 1144 ---DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMP 1184 (1351)
Q Consensus 1144 ---~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p 1184 (1351)
...|. ....+...||+++++.+.+ .+++++|||.|...+
T Consensus 216 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~~~~vgE~~~~~~ 257 (551)
T PRK10933 216 DGDGRRFY-TDGPRAHEFLQEMNRDVFT-PRGLMTVGEMSSTSL 257 (551)
T ss_pred cccccccc-CCChHHHHHHHHHHHHhhc-ccCcEEEEeecCCCH
Confidence 00010 1234577899999887643 347899999886443
|
|
| >PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-33 Score=321.58 Aligned_cols=252 Identities=25% Similarity=0.330 Sum_probs=159.4
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc---CcCCCCCCCccccC-----CCCC-
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG---LNEFDGTQACFFHD-----GPRG- 1083 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~---l~~~dg~~~~yf~~-----~~~g- 1083 (1351)
.+||| ++||++|||+|||.+|||+||++||++||+||||+|+||++..+... ....+.....||.. .+.+
T Consensus 32 ~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (316)
T PF00128_consen 32 GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGN 111 (316)
T ss_dssp STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSST
T ss_pred ccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccccccccccccccccccccceeecccccccccc
Confidence 57899 89999999999999999999999999999999999999999998431 22222223333320 0110
Q ss_pred -----CCCCC-------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCccc
Q psy9001 1084 -----THPLW-------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 1145 (1351)
Q Consensus 1084 -----~~~~w-------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~ 1145 (1351)
....| +..+||++||+||++|+++++||+++ +|||||||++.+|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~~-giDGfR~D~~~~~----------------- 173 (316)
T PF00128_consen 112 WYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWIEE-GIDGFRLDAAKHI----------------- 173 (316)
T ss_dssp BBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHHHT-TESEEEETTGGGS-----------------
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhhc-eEeEEEEcccccc-----------------
Confidence 01112 23489999999999999999999986 6999999999988
Q ss_pred ccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccc-cCCcccccccccccccccccccccccccCchhH
Q psy9001 1146 YFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVT-EGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYK 1224 (1351)
Q Consensus 1146 ~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~-~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~r 1224 (1351)
...+|+++++++++..|++++|||.+.+......... .+.. ++. . ...++.. ...
T Consensus 174 ---------~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~~~~~--~~~--~-----~~~~~~~------~~~ 229 (316)
T PF00128_consen 174 ---------PKEFWKEFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAYDGYF--DLD--S-----VFDFPDY------GLR 229 (316)
T ss_dssp ---------SHHHHHHHHHHHHHHHTTSEEEEEESSSSHHHHHHHHHHGTT--SHS--E-----EEHHHHH------HHH
T ss_pred ---------chhhHHHHhhhhhhhccccceeeeeccCCccccchhhhcccc--ccc--h-----hhccccc------ccc
Confidence 3488899999999999999999999866543222111 1110 000 0 0001100 000
Q ss_pred hhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHH-HHHHHH
Q psy9001 1225 VVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTE-SNMNGF 1303 (1351)
Q Consensus 1225 d~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~-~~r~A~ 1303 (1351)
..+. .+.+.......... ..........+. ....++|++|||+.|. ........ ++++|+
T Consensus 230 ~~~~-------~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~f~~nHD~~r~----~~~~~~~~~~~~~a~ 290 (316)
T PF00128_consen 230 SSFF-------DFWRHGDGDASDLA-----NWLSSWQSSYPD---PYRAVNFLENHDTPRF----ASRFGNNRDRLKLAL 290 (316)
T ss_dssp HHHH-------HHHTTTSSHHHHHH-----HHHHHHHHHSTT---GGGEEEESSHTTSSTH----HHHTTTHHHHHHHHH
T ss_pred cchh-------hhhccccchhhhhh-----hhhhhhhhhhcc---cceeeecccccccccc----hhhhcccchHHHHHH
Confidence 0000 00000000000000 000000011111 1122899999999862 22333343 799999
Q ss_pred HHHHccCCccEEEee-cccCCCCc
Q psy9001 1304 GIQTLPTQSPLYLVA-KIEKPCST 1326 (1351)
Q Consensus 1304 allltspGiP~If~g-~~~~~~~~ 1326 (1351)
+++||+||+||||+| |+...+..
T Consensus 291 ~~ll~~pG~P~iy~G~E~g~~~~~ 314 (316)
T PF00128_consen 291 AFLLTSPGIPMIYYGDEIGMTGSK 314 (316)
T ss_dssp HHHHHSSSEEEEETTGGGTBBTSS
T ss_pred HHHHcCCCccEEEeChhccCCCCC
Confidence 999999999999999 77666554
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A .... |
| >PRK09505 malS alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-32 Score=336.55 Aligned_cols=334 Identities=16% Similarity=0.164 Sum_probs=193.8
Q ss_pred CCceEEEeecCCcccCC--Cccccccccc-ccccceeccCCCcccccccccccccCC-ceEEEecCCCCCCCCcccccCc
Q psy9001 889 ENLKIYESHVGICTQEQ--KCASYEDFVR-VVIPRIVKQGDFNNWNREEFAYKKLDF-GKWELVLPPNPDGDFNNWNREE 964 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~--~~gty~~f~~-~~lp~ik~lG~fn~~~~~~~~l~~lg~-giwel~ip~~~~g~~Y~~~~~~ 964 (1351)
.+++||++-+.-|.... +...|..--. .--+.--.-|||+++..++++|+.+|+ +||...|-...
T Consensus 188 ~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~----------- 256 (683)
T PRK09505 188 HNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPLEQI----------- 256 (683)
T ss_pred ccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCcccccc-----------
Confidence 67889999998885321 1111110000 000011123788999999999999986 46654430000
Q ss_pred cceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHH
Q psy9001 965 FAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECH 1043 (1351)
Q Consensus 965 ~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH 1043 (1351)
.|. .+. |. ...+.+.++||| +.||+.|||+|||.+|||+||++||
T Consensus 257 -------~~~----~~~----------------------g~-~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH 302 (683)
T PRK09505 257 -------HGW----VGG----------------------GT-KGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAH 302 (683)
T ss_pred -------ccc----ccc----------------------cc-ccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHH
Confidence 000 000 00 011223468999 9999999999999999999999999
Q ss_pred HcCCEEEEEeecccccCCccc-----cCcC--------CCCCCCc---cc-------c-------C-CCCCCCCCCC---
Q psy9001 1044 KAGLYVLLDVVHSHASKNVLD-----GLNE--------FDGTQAC---FF-------H-------D-GPRGTHPLWD--- 1089 (1351)
Q Consensus 1044 ~~GI~VILDVV~NHts~~~~~-----~l~~--------~dg~~~~---yf-------~-------~-~~~g~~~~w~--- 1089 (1351)
++||+||||+|+||++..+.. ++.. -...... |+ + . +......+|+
T Consensus 303 ~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w 382 (683)
T PRK09505 303 QRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDW 382 (683)
T ss_pred HCCCEEEEEECcCCCcccccccccccchhhhhhhccccccccCcccccccccccccccccccccccCCcccccccccccc
Confidence 999999999999999953210 1100 0000001 11 0 0 0001111111
Q ss_pred ----------------------CCCCCCC-----------------------CHHHHHHHHHHHHHHHHHhCCCeEEEcC
Q psy9001 1090 ----------------------SRLFNYS-----------------------EIEVLRFLLSNLRWYLEEYQFDGFRFDG 1124 (1351)
Q Consensus 1090 ----------------------~~dlN~~-----------------------np~Vr~~lid~l~yWl~eygVDGFRfD~ 1124 (1351)
..+||.+ ||+||++|+++++||+++|||||||+|+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDa 462 (683)
T PRK09505 383 IRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDT 462 (683)
T ss_pred ccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 1244444 5699999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHH-------HhhCC-------CeEEEEccCCCCCCccccc
Q psy9001 1125 VTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFL-------HDKYP-------EIITIAEDVSGMPASCRPV 1190 (1351)
Q Consensus 1125 a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l-------~~~~P-------d~ilIaE~~~~~p~~~~p~ 1190 (1351)
|.++ ...||++++..+ ++.+| +++||||.|...+......
T Consensus 463 akhV--------------------------~~~FW~~~~~~~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~~~y~ 516 (683)
T PRK09505 463 AKHV--------------------------ELPAWQQLKQEASAALAEWKKANPDKALDDAPFWMTGEAWGHGVMKSDYY 516 (683)
T ss_pred hHhC--------------------------CHHHHHHHHHHHHHHHHHHHHhccccccccCCeEEEEEecCCchhhHHHH
Confidence 9988 345666665555 34455 4899999996544332222
Q ss_pred ccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCcc
Q psy9001 1191 TEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGI 1270 (1351)
Q Consensus 1191 ~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~ 1270 (1351)
. .+||.. ++|+.. .....++ ..+.++... +..... ...+ .
T Consensus 517 ~---~~fDsv---------~NF~~~-----~~~~~~~-------~~~~~l~~~---------~~~~~~---~~~~----~ 556 (683)
T PRK09505 517 R---HGFDAM---------INFDYQ-----EQAAKAV-------DCLAQMDPT---------YQQMAE---KLQD----F 556 (683)
T ss_pred h---hcCccc---------cCchHH-----HHHHHHH-------HHHHHHHHH---------HHHHhh---hcCc----c
Confidence 1 234422 222211 0011111 000111000 000000 0001 1
Q ss_pred ceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccCCccEEEee-cccCCCCc---c--ceeeccCCcce
Q psy9001 1271 IDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCST---R--EVVKAPLPFGV 1338 (1351)
Q Consensus 1271 ~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~~~~---~--~~~~~p~~~~~ 1338 (1351)
..++|++|||+.|... + .....++|+|++++||+||+|+||.| |+...+.. . ..+|.||||+-
T Consensus 557 -~~l~FLdNHDt~Rf~s-~---~~~~~~~klAaall~tlpGiP~IYYGdEiGm~gg~~g~DP~~~~R~~M~W~~ 625 (683)
T PRK09505 557 -NVLSYLSSHDTRLFFE-G---GQSYAKQRRAAELLLLAPGAVQIYYGDESARPFGPTGSDPLQGTRSDMNWQE 625 (683)
T ss_pred -ceeecccCCChhhhhh-h---cCchHHHHHHHHHHHhCCCCcEEEechhhCccCCCCCCCCcccccccCCccc
Confidence 1178999999976421 1 11225789999999999999999999 88876632 2 24899999974
|
|
| >PRK09441 cytoplasmic alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=318.78 Aligned_cols=238 Identities=18% Similarity=0.233 Sum_probs=155.9
Q ss_pred ccccc-ccccc---------cccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcc-ccCc---------------
Q psy9001 1014 EQLKY-LVDEC---------HKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL-DGLN--------------- 1067 (1351)
Q Consensus 1014 ~~hgY-~~Dy~---------~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~-~~l~--------------- 1067 (1351)
.+||| +.||| .|||+|||.+|||+||++||++||+||||+|+||++.... .++.
T Consensus 52 ~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (479)
T PRK09441 52 YDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISE 131 (479)
T ss_pred CCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCC
Confidence 46999 99999 7999999999999999999999999999999999996432 1110
Q ss_pred --------CCC--C---CC----CccccCCCC---------------CCCCCCC--------------CCCCCCCCHHHH
Q psy9001 1068 --------EFD--G---TQ----ACFFHDGPR---------------GTHPLWD--------------SRLFNYSEIEVL 1101 (1351)
Q Consensus 1068 --------~~d--g---~~----~~yf~~~~~---------------g~~~~w~--------------~~dlN~~np~Vr 1101 (1351)
.+. + .. ..|++..+. +....|. ..|||++||+||
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~ 211 (479)
T PRK09441 132 PYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVR 211 (479)
T ss_pred ceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHH
Confidence 000 0 00 012221110 0012232 348999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhC-CCeEEEEccC
Q psy9001 1102 RFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY-PEIITIAEDV 1180 (1351)
Q Consensus 1102 ~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~-Pd~ilIaE~~ 1180 (1351)
++|+++++||++++||||||+|+|.+| ...||+.+++.+++.. |++++|||.|
T Consensus 212 ~~l~~~~~~w~~~~giDGfRlDavk~v--------------------------~~~f~~~~~~~~~~~~~~~~~~vGE~~ 265 (479)
T PRK09441 212 EELKYWAKWYMETTGFDGFRLDAVKHI--------------------------DAWFIKEWIEHVREVAGKDLFIVGEYW 265 (479)
T ss_pred HHHHHHHHHHHHhcCCCEEEEhhhcCC--------------------------CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 999999999999999999999999988 3568899999998766 6999999999
Q ss_pred CCCCCcccccccCC----cccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccc
Q psy9001 1181 SGMPASCRPVTEGG----TGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR 1256 (1351)
Q Consensus 1181 ~~~p~~~~p~~~gg----~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r 1256 (1351)
.+.+.....+..+. ..|| |+.. ..+++++... ....+..-+ .
T Consensus 266 ~~~~~~~~~y~~~~~~~~~~~D-------------f~~~-----~~l~~~~~~~-----~~~~l~~~~----~------- 311 (479)
T PRK09441 266 SHDVDKLQDYLEQVEGKTDLFD-------------VPLH-----YNFHEASKQG-----RDYDMRNIF----D------- 311 (479)
T ss_pred CCChHHHHHHHHhcCCCceEec-------------HHHH-----HHHHHHHhcC-----CccchHhhh----C-------
Confidence 87765444333221 1233 3322 3345555211 000000000 0
Q ss_pred cCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccC-CccEEEeec
Q psy9001 1257 RNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPT-QSPLYLVAK 1319 (1351)
Q Consensus 1257 ~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltsp-GiP~If~g~ 1319 (1351)
.......|.. .+||++|||+.|.... .. .......++|++++||+| |+|+||.|+
T Consensus 312 -~~~~~~~~~~-----~~~FldNHD~~R~~~~-~~-~~~~~~~~lA~a~llT~p~GiP~IYYGd 367 (479)
T PRK09441 312 -GTLVEADPFH-----AVTFVDNHDTQPGQAL-ES-PVEPWFKPLAYALILLREEGYPCVFYGD 367 (479)
T ss_pred -cchhhcCccc-----ceeeeccccCCCcccc-cc-cccccchHHHHHHHHhCCCCceeeEecc
Confidence 0000011222 2899999999875221 10 011123579999999999 999999994
|
|
| >PLN00196 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=294.12 Aligned_cols=141 Identities=22% Similarity=0.286 Sum_probs=104.5
Q ss_pred Ccccccc-cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCc---CCCC-C---CCccccC---
Q psy9001 1012 TPEQLKY-LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN---EFDG-T---QACFFHD--- 1079 (1351)
Q Consensus 1012 sp~~hgY-~~Dy~~id-p~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~---~~dg-~---~~~yf~~--- 1079 (1351)
+.++||| +.|||.++ ++|||.+|||+||++||++||+||||+|+||++.++.+... .+.+ . ...||..
T Consensus 69 s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~ 148 (428)
T PLN00196 69 SVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMIC 148 (428)
T ss_pred CCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCC
Confidence 3457999 88999999 69999999999999999999999999999999987643211 1111 1 1223311
Q ss_pred -C------CCCCC-CCC---CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccC
Q psy9001 1080 -G------PRGTH-PLW---DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1148 (1351)
Q Consensus 1080 -~------~~g~~-~~w---~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g 1148 (1351)
+ ..+.. .++ ...+||++||+||++|+++++||++++||||||||+|+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~-------------------- 208 (428)
T PLN00196 149 RDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGY-------------------- 208 (428)
T ss_pred CCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhC--------------------
Confidence 0 00111 111 2458999999999999999999999999999999999988
Q ss_pred CcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCC
Q psy9001 1149 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1182 (1351)
Q Consensus 1149 ~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~ 1182 (1351)
+..|+++ .+++.+| .++|||.|.+
T Consensus 209 ------~~~f~~~---~v~~~~p-~f~VGE~W~~ 232 (428)
T PLN00196 209 ------SAEVAKV---YIDGTEP-SFAVAEIWTS 232 (428)
T ss_pred ------CHHHHHH---HHHccCC-cEEEEEEecc
Confidence 2345444 3555667 7899999965
|
|
| >PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-29 Score=285.78 Aligned_cols=177 Identities=24% Similarity=0.375 Sum_probs=140.8
Q ss_pred CCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchh
Q psy9001 196 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 275 (1351)
Q Consensus 196 G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e 275 (1351)
|||+||+++ |||||+||||+ |||||||+ . +. .+|||+++||+
T Consensus 1 Gd~~gi~~k-Ldyl~~lGv~~----I~l~Pi~~--------------------~--~~------~~~gY~~~d~~----- 42 (316)
T PF00128_consen 1 GDFRGIIDK-LDYLKDLGVNA----IWLSPIFE--------------------S--PN------GYHGYDPSDYY----- 42 (316)
T ss_dssp SSHHHHHHT-HHHHHHHTESE----EEESS-EE--------------------S--SS------STTTTSESEEE-----
T ss_pred CCHHHHHHh-hHHHHHcCCCc----eecccccc--------------------c--cc------ccccccceeee-----
Confidence 899999999 99999999999 99999553 2 21 35999999999
Q ss_pred hhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCc--
Q psy9001 276 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL-- 353 (1351)
Q Consensus 276 ~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~-- 353 (1351)
+++ |+|||.+|||+||++||++||+||||+|+||++.++.+..
T Consensus 43 ----------------~vd-------------------~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~ 87 (316)
T PF00128_consen 43 ----------------AVD-------------------PRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDHPWFQDS 87 (316)
T ss_dssp ----------------EES-------------------TTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTSHHHHHH
T ss_pred ----------------ccc-------------------cccchhhhhhhhhhccccccceEEEeeecccccccccccccc
Confidence 777 9999999999999999999999999999999999886521
Q ss_pred -ccCCCCCCcCcccC-----CC------CCCCC------------C-CCccCCCCCHHHHHHHHHHHHHHHHHcCCCccc
Q psy9001 354 -NEFDGTQACFFHDG-----PR------GTHPL------------W-DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFR 408 (1351)
Q Consensus 354 -~~f~g~~~~yy~~~-----~~------~~~~~------------w-~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR 408 (1351)
.......+.||... +. ..... | +.++||+.+|+||++|++++++|++ ++|||||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~-~giDGfR 166 (316)
T PF00128_consen 88 LNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWIE-EGIDGFR 166 (316)
T ss_dssp HTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHHH-TTESEEE
T ss_pred ccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhh-ceEeEEE
Confidence 11221222333210 00 00111 1 1368999999999999999999998 5799999
Q ss_pred cccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCC
Q psy9001 409 FDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPA 472 (1351)
Q Consensus 409 ~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~ 472 (1351)
+|+|..| ...||+.+++.+++..|++++|||.+.+.+.
T Consensus 167 ~D~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~ 204 (316)
T PF00128_consen 167 LDAAKHI--------------------------PKEFWKEFRDEVKEEKPDFFLIGEVWGGDNE 204 (316)
T ss_dssp ETTGGGS--------------------------SHHHHHHHHHHHHHHHTTSEEEEEESSSSHH
T ss_pred Ecccccc--------------------------chhhHHHHhhhhhhhccccceeeeeccCCcc
Confidence 9999988 2378999999999999999999999877543
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A .... |
| >PLN02361 alpha-amylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=287.45 Aligned_cols=246 Identities=15% Similarity=0.242 Sum_probs=154.2
Q ss_pred cccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcc---ccCcCCCCCCCccc-----cC-CCC
Q psy9001 1013 PEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL---DGLNEFDGTQACFF-----HD-GPR 1082 (1351)
Q Consensus 1013 p~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~---~~l~~~dg~~~~yf-----~~-~~~ 1082 (1351)
.++||| +.|||.++|+|||.+|||+||++||++||+||+|+|+||++.... .....+++....|. .. ...
T Consensus 55 ~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~ 134 (401)
T PLN02361 55 LAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGL 134 (401)
T ss_pred CCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccCCCCCCCCCcccCCCCcCCCCccccccccCCC
Confidence 346899 899999999999999999999999999999999999999864321 12223333211121 10 001
Q ss_pred CCCCC---C-CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHH
Q psy9001 1083 GTHPL---W-DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIY 1158 (1351)
Q Consensus 1083 g~~~~---w-~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~f 1158 (1351)
+.... + ...|||++||+||++|+++++||++++||||||+|++.++ +..|
T Consensus 135 ~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~--------------------------~~~f 188 (401)
T PLN02361 135 GNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGY--------------------------SAKF 188 (401)
T ss_pred CCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccC--------------------------CHHH
Confidence 11111 1 2469999999999999999998888899999999999988 4567
Q ss_pred HHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCccccc-----cccccc-----ccccccccccccccCchhHhhhc
Q psy9001 1159 LMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY-----RLGQYL-----HQHSILFPRVGVEQAGKYKVVLD 1228 (1351)
Q Consensus 1159 l~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy-----~~~~~~-----h~~~~~f~~~~~e~n~~~rd~l~ 1228 (1351)
++++.+.+ .| ++++||.|.+..... + .+-+.++. .+..++ ..+.++|+.. ..+++++.
T Consensus 189 ~~~~~~~~---~p-~f~VGE~w~~~~~~~-~--d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF~l~-----~~l~~a~~ 256 (401)
T PLN02361 189 VKEYIEAA---KP-LFSVGEYWDSCNYSG-P--DYRLDYNQDSHRQRIVNWIDGTGGLSAAFDFTTK-----GILQEAVK 256 (401)
T ss_pred HHHHHHhh---CC-eEEEEEEecCCCcCC-c--ccccchhhhhHHHHHHHHHHhcCCcceeecHHHH-----HHHHHHHh
Confidence 77776554 45 789999997632100 0 00001100 000000 0112445544 45555552
Q ss_pred cCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHc
Q psy9001 1229 SDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTL 1308 (1351)
Q Consensus 1229 ~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~alllt 1308 (1351)
+.+.++.+.+ +++.......|.+. |+|++|||+.|... ........+++|.|++||
T Consensus 257 ------~~~~~l~~~~----------~~~~~~~~~~p~~a-----VTFvdNHDt~r~~~---~~~~~~~~~~~AyA~iLT 312 (401)
T PLN02361 257 ------GQWWRLRDAQ----------GKPPGVMGWWPSRA-----VTFIDNHDTGSTQA---HWPFPSDHIMEGYAYILT 312 (401)
T ss_pred ------hhHHHHhhhh----------cCCcchhhcChhhc-----eEecccCcCcchhh---ccCCchHHHHHHHHHHHC
Confidence 1122222111 01111122234444 99999999876311 112234678889999999
Q ss_pred cCCccEEEeecc
Q psy9001 1309 PTQSPLYLVAKI 1320 (1351)
Q Consensus 1309 spGiP~If~g~~ 1320 (1351)
.||+||||.|+.
T Consensus 313 ~pG~P~Vyyg~~ 324 (401)
T PLN02361 313 HPGIPTVFYDHF 324 (401)
T ss_pred CCCcCeEeeccc
Confidence 999999999975
|
|
| >PLN00196 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-27 Score=278.84 Aligned_cols=188 Identities=19% Similarity=0.232 Sum_probs=133.6
Q ss_pred CCceEEEEec-CCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccC
Q psy9001 177 DNLKIYESHV-GICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 255 (1351)
Q Consensus 177 ~~~vIYE~hv-r~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~ 255 (1351)
.+-+++|.+- .++ ....|.|++|+++ ||||++||||+ |||+|+|+ .
T Consensus 23 ~~~v~~Q~F~W~~~--~~~gg~~~~i~~k-ldyL~~LGvta----IWL~P~~~--------------------s------ 69 (428)
T PLN00196 23 AGQVLFQGFNWESW--KQNGGWYNFLMGK-VDDIAAAGITH----VWLPPPSH--------------------S------ 69 (428)
T ss_pred CCCEEEEeeccCCC--CCCCcCHHHHHHH-HHHHHHcCCCE----EEeCCCCC--------------------C------
Confidence 3445555443 111 2234789999998 99999999999 99999443 1
Q ss_pred CCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9001 256 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 335 (1351)
Q Consensus 256 s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~ 335 (1351)
..++||++.||| .+++ ++||+.+|||+||++||++||+
T Consensus 70 ---~s~hGY~~~D~y---------------------~ld~------------------~~fGt~~elk~Lv~~aH~~GIk 107 (428)
T PLN00196 70 ---VSEQGYMPGRLY---------------------DLDA------------------SKYGNEAQLKSLIEAFHGKGVQ 107 (428)
T ss_pred ---CCCCCCCccccC---------------------CCCc------------------ccCCCHHHHHHHHHHHHHCCCE
Confidence 124899999999 4430 5899999999999999999999
Q ss_pred EEEEeeccccccCCcCCc---ccCCCCC----CcCccc----------CCCCCCCCC----CCccCCCCCHHHHHHHHHH
Q psy9001 336 VLLDVVHSHASKNVLDGL---NEFDGTQ----ACFFHD----------GPRGTHPLW----DSRLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 336 VILDvV~NH~~~~~~~~~---~~f~g~~----~~yy~~----------~~~~~~~~w----~~~~ln~~~p~v~~~l~~~ 394 (1351)
||+|+|+||++.++.... ..|.+.. ..|+.. +..+.+..| ..++||+.||+|+++|+++
T Consensus 108 VilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~ 187 (428)
T PLN00196 108 VIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGW 187 (428)
T ss_pred EEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHH
Confidence 999999999997653211 1232211 122210 001111111 2378999999999999999
Q ss_pred HHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q psy9001 395 LRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 469 (1351)
Q Consensus 395 l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~ 469 (1351)
+++|++++||||||+|+|.++ ...|++. .+++.+| .++|||.|.+
T Consensus 188 ~~wl~~~~GiDG~RlD~ak~~--------------------------~~~f~~~---~v~~~~p-~f~VGE~W~~ 232 (428)
T PLN00196 188 LLWLKSDIGFDAWRLDFAKGY--------------------------SAEVAKV---YIDGTEP-SFAVAEIWTS 232 (428)
T ss_pred HHHHhhCCCCCEEEeehhhhC--------------------------CHHHHHH---HHHccCC-cEEEEEEecc
Confidence 999988899999999999877 1235544 3555667 7799999865
|
|
| >PLN02784 alpha-amylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-26 Score=282.28 Aligned_cols=243 Identities=19% Similarity=0.287 Sum_probs=150.4
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc---CcCCCCCCCccccC-----C----
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG---LNEFDGTQACFFHD-----G---- 1080 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~---l~~~dg~~~~yf~~-----~---- 1080 (1351)
+++|| +.|||.++++|||.+|||+||++||++||+||+|+|+||++...... .+.+.+.. .|... +
T Consensus 548 s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~-dW~d~~i~~ddp~F~ 626 (894)
T PLN02784 548 SPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRL-NWDDRAVVADDPHFQ 626 (894)
T ss_pred CCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCCee-cCCCCcccCCCcccC
Confidence 56899 89999999999999999999999999999999999999998653211 11111110 11100 0
Q ss_pred CCCC---CCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHH
Q psy9001 1081 PRGT---HPLW-DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDAL 1156 (1351)
Q Consensus 1081 ~~g~---~~~w-~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~ 1156 (1351)
.++. ..+| ...|||++||+||++|+++++||++++||||||||+|.++ .-
T Consensus 627 GrG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf--------------------------~~ 680 (894)
T PLN02784 627 GRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGF--------------------------WG 680 (894)
T ss_pred CcCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCC--------------------------CH
Confidence 0010 0112 3459999999999999999999999999999999999855 12
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccc--cc---cccccc-----cccccccccccccCchhHhh
Q psy9001 1157 IYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD--YR---LGQYLH-----QHSILFPRVGVEQAGKYKVV 1226 (1351)
Q Consensus 1157 ~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFd--y~---~~~~~h-----~~~~~f~~~~~e~n~~~rd~ 1226 (1351)
.|++ +.++...| .++|||.|.+...- .+.+.++ +. +..++. ...+||+.. +.++++
T Consensus 681 ~Fvk---eyv~a~kp-~F~VGEyWd~~~~~-----~g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk-----~~L~~A 746 (894)
T PLN02784 681 GYVK---DYMEASEP-YFAVGEYWDSLSYT-----YGEMDYNQDAHRQRIVDWINATNGTAGAFDVTTK-----GILHSA 746 (894)
T ss_pred HHHH---HHHhccCC-cEEEEEeccccccc-----cCccccCchhHHHHHHHHHHhCCCceeeechhHH-----HHHHHH
Confidence 2333 33444455 69999999763210 0111111 10 000000 012334433 445555
Q ss_pred hccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHH
Q psy9001 1227 LDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQ 1306 (1351)
Q Consensus 1227 l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~all 1306 (1351)
+.+ +.++++... .++...+....|.+. |+|++|||.... +. .........++|.|++
T Consensus 747 ~~~-----~e~wrL~d~----------~g~~~glv~~~P~~A-----VTFVDNHDTg~~--Q~-~w~~p~~k~~~AYAyI 803 (894)
T PLN02784 747 LER-----CEYWRLSDQ----------KGKPPGVVGWWPSRA-----VTFIENHDTGST--QG-HWRFPEGKEMQGYAYI 803 (894)
T ss_pred Hhc-----cchhhhhhc----------cCCCCCeeccccCce-----EEEecCCCCCCC--cc-cCCCCccchhhHHHHH
Confidence 521 122222211 011223333456655 999999998642 11 1222334577899999
Q ss_pred HccCCccEEEeecc
Q psy9001 1307 TLPTQSPLYLVAKI 1320 (1351)
Q Consensus 1307 ltspGiP~If~g~~ 1320 (1351)
||.||+||||.+..
T Consensus 804 LthpG~PcVFy~h~ 817 (894)
T PLN02784 804 LTHPGTPAVFYDHI 817 (894)
T ss_pred HcCCCcceEEehhh
Confidence 99999999999975
|
|
| >COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-25 Score=270.55 Aligned_cols=165 Identities=24% Similarity=0.307 Sum_probs=128.9
Q ss_pred ceEEEEecCCccCC--------CCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccc
Q psy9001 179 LKIYESHVGICTQE--------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 250 (1351)
Q Consensus 179 ~vIYE~hvr~ft~~--------~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~ 250 (1351)
.+||++.++.|... .+.|+++||+++ ||||++|||++ |||+|||+ .
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~-LdYl~~LGv~a----iwl~Pi~~--------------------s- 54 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEK-LDYLKELGVDA----IWLSPIFE--------------------S- 54 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHh-hhHHHHhCCCE----EEeCCCCC--------------------C-
Confidence 48999999999543 336999999998 99999999999 99999664 1
Q ss_pred ccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHH
Q psy9001 251 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 330 (1351)
Q Consensus 251 ~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H 330 (1351)
+ ..++||++.||. .++ |.+|++++|++||++||
T Consensus 55 -~------~~~~gY~~~Dy~---------------------~id-------------------~~~Gt~~d~~~li~~~H 87 (505)
T COG0366 55 -P------QADHGYDVSDYT---------------------KVD-------------------PHFGTEEDFKELVEEAH 87 (505)
T ss_pred -C------ccCCCccccchh---------------------hcC-------------------cccCCHHHHHHHHHHHH
Confidence 1 345899999998 555 99999999999999999
Q ss_pred HcCCEEEEEeeccccccCCcCCcccC-CCCC---CcCccc-C-------C-----CCCCCCCC---------------Cc
Q psy9001 331 KAGLYVLLDVVHSHASKNVLDGLNEF-DGTQ---ACFFHD-G-------P-----RGTHPLWD---------------SR 378 (1351)
Q Consensus 331 ~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~---~~yy~~-~-------~-----~~~~~~w~---------------~~ 378 (1351)
++||+||||+|+||++..+.+..... .+.. ..||.. . + ......|. -.
T Consensus 88 ~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (505)
T COG0366 88 KRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQP 167 (505)
T ss_pred HCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEEEecCCCCC
Confidence 99999999999999999886553221 1111 133321 0 0 01111221 14
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccccc
Q psy9001 379 LFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLY 417 (1351)
Q Consensus 379 ~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~ 417 (1351)
+||+.+|+||+.+++.++||++ +||||||+|++.++..
T Consensus 168 dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~ 205 (505)
T COG0366 168 DLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISK 205 (505)
T ss_pred CcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhcc
Confidence 6999999999999999999999 8999999999999853
|
|
| >PLN02361 alpha-amylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=257.20 Aligned_cols=169 Identities=17% Similarity=0.264 Sum_probs=126.0
Q ss_pred CHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhh
Q psy9001 197 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEM 276 (1351)
Q Consensus 197 ~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~ 276 (1351)
-|++|+++ ||||++||||+ |||+|+++ . ..++||++.|||
T Consensus 27 ~w~~i~~k-l~~l~~lG~t~----iwl~P~~~--------------------~---------~~~~GY~~~d~y------ 66 (401)
T PLN02361 27 WWRNLEGK-VPDLAKSGFTS----AWLPPPSQ--------------------S---------LAPEGYLPQNLY------ 66 (401)
T ss_pred HHHHHHHH-HHHHHHcCCCE----EEeCCCCc--------------------C---------CCCCCCCccccc------
Confidence 68999998 99999999999 99999442 1 123899999999
Q ss_pred hcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCc--CC-c
Q psy9001 277 YTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL--DG-L 353 (1351)
Q Consensus 277 ~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~--~~-~ 353 (1351)
.++ ++||+.+||++||++||++||+||+|+|+||++.... .+ .
T Consensus 67 ---------------~~~-------------------~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y 112 (401)
T PLN02361 67 ---------------SLN-------------------SAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMY 112 (401)
T ss_pred ---------------ccC-------------------cccCCHHHHHHHHHHHHHcCCEEEEEEccccccCCCCCCCCCc
Confidence 666 9999999999999999999999999999999864321 11 1
Q ss_pred ccCCCCCCcC-----ccc-CCCCCCCC---C-CCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCC
Q psy9001 354 NEFDGTQACF-----FHD-GPRGTHPL---W-DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCG 423 (1351)
Q Consensus 354 ~~f~g~~~~y-----y~~-~~~~~~~~---w-~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~ 423 (1351)
..|.|....| +.. ...+.+.. + ..++||+.||+||++|++.+++|++++||||||+|+|.++
T Consensus 113 ~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~-------- 184 (401)
T PLN02361 113 NRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGY-------- 184 (401)
T ss_pred ccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccC--------
Confidence 2233321111 111 00111111 1 1379999999999999999987777799999999999988
Q ss_pred CCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q psy9001 424 EGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 469 (1351)
Q Consensus 424 ~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~ 469 (1351)
+..|++.+.+.+ .| ++++||.|.+
T Consensus 185 ------------------~~~f~~~~~~~~---~p-~f~VGE~w~~ 208 (401)
T PLN02361 185 ------------------SAKFVKEYIEAA---KP-LFSVGEYWDS 208 (401)
T ss_pred ------------------CHHHHHHHHHhh---CC-eEEEEEEecC
Confidence 245777776543 45 7899999876
|
|
| >PRK13840 sucrose phosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-24 Score=254.59 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=108.9
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcC----CCCCCCccccC-C---C---
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE----FDGTQACFFHD-G---P--- 1081 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~----~dg~~~~yf~~-~---~--- 1081 (1351)
+.+|| ++||+.|||+|||.+||++|++ ||+||||+|+||||..|.+.... -++....||.. + +
T Consensus 49 sD~GYdv~DY~~VDP~fGt~eDf~~L~~-----giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~ 123 (495)
T PRK13840 49 ADAGFDPIDHTKVDPRLGDWDDVKALGK-----THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGA 123 (495)
T ss_pred CCCCCCCcChhhcCcccCCHHHHHHHHh-----CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCC
Confidence 46899 9999999999999999999995 99999999999999998432211 12233344431 1 0
Q ss_pred ------------CCC-CC-----------CCC-----CCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccC
Q psy9001 1082 ------------RGT-HP-----------LWD-----SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHN 1132 (1351)
Q Consensus 1082 ------------~g~-~~-----------~w~-----~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~ 1132 (1351)
.+. .+ .|+ ..|||++||+|+++|+++++||++. ||||||+|++..+.+..
T Consensus 124 ~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~V~~~i~~il~fwl~~-GVDgfRLDAv~~l~K~~ 202 (495)
T PRK13840 124 TEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAAGWEYLMSILDRFAAS-HVTLIRLDAAGYAIKKA 202 (495)
T ss_pred CCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCHHHHHHHHHHHHHHHHC-CCCEEEEechhhhhcCC
Confidence 010 11 122 2489999999999999999999985 99999999999885432
Q ss_pred CCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCC
Q psy9001 1133 HGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1182 (1351)
Q Consensus 1133 ~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~ 1182 (1351)
|... + ..++++.+|++++..++.. +..+|+|.++.
T Consensus 203 -gt~c---------~---~~pe~~~~l~~lr~~~~~~--~~~ll~Ei~~y 237 (495)
T PRK13840 203 -GTSC---------F---MIPETFEFIDRLAKEARAR--GMEVLVEIHSY 237 (495)
T ss_pred -CCCc---------C---CChHHHHHHHHHHHHhhhc--CCEEEEeCccc
Confidence 1000 0 1357889999999999765 56689997643
|
|
| >COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-23 Score=252.46 Aligned_cols=169 Identities=24% Similarity=0.334 Sum_probs=119.8
Q ss_pred ceEEEeecCCcccCCCcccccccccccccceeccCCCcccccccccccccCC-ceEEEecCCCCCCCCcccccCccceec
Q psy9001 891 LKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDF-GKWELVLPPNPDGDFNNWNREEFAYKK 969 (1351)
Q Consensus 891 ~iIYE~HV~~~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~-giwel~ip~~~~g~~Y~~~~~~~~y~~ 969 (1351)
++||++-.+.|......+ .+.-.-.|++.+++.+++|++.+|+ .+|.
T Consensus 1 ~viyqi~~~~f~d~~~~~---------~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl----------------------- 48 (505)
T COG0366 1 AVIYQIYPDRFADSNGSN---------GPDYDGGGDLKGITEKLDYLKELGVDAIWL----------------------- 48 (505)
T ss_pred CcEEEEechhhcCCCCCC---------ccCCCCcccHHhHHHhhhHHHHhCCCEEEe-----------------------
Confidence 478888888776543322 1111225778887778888877665 3443
Q ss_pred CCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCC-cccccc-ccccccccCCCCCHHHHHHHHHHHHHcCC
Q psy9001 970 LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGT-PEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGL 1047 (1351)
Q Consensus 970 ~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~s-p~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI 1047 (1351)
+|++.+ .++||| +.||+.|+|.|||++||++||++||++||
T Consensus 49 -------------------------------------~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi 91 (505)
T COG0366 49 -------------------------------------SPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGI 91 (505)
T ss_pred -------------------------------------CCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCC
Confidence 333445 478999 99999999999999999999999999999
Q ss_pred EEEEEeecccccCCcccc---CcCCCCCC-Ccccc-CC-------C-----CCCCCCCC---------------CCCCCC
Q psy9001 1048 YVLLDVVHSHASKNVLDG---LNEFDGTQ-ACFFH-DG-------P-----RGTHPLWD---------------SRLFNY 1095 (1351)
Q Consensus 1048 ~VILDVV~NHts~~~~~~---l~~~dg~~-~~yf~-~~-------~-----~g~~~~w~---------------~~dlN~ 1095 (1351)
+||||+|+||++..|... ........ ..||. .. + ......|. ..+||+
T Consensus 92 ~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~ 171 (505)
T COG0366 92 KVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNW 171 (505)
T ss_pred EEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCC
Confidence 999999999999988322 11111111 12222 10 0 00011121 127999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcCccccc
Q psy9001 1096 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSML 1129 (1351)
Q Consensus 1096 ~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~ 1129 (1351)
.|++||+++++.++||++ .||||||+|++.++.
T Consensus 172 ~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~ 204 (505)
T COG0366 172 ENPEVREELLDVVKFWLD-KGVDGFRLDAAKHIS 204 (505)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhc
Confidence 999999999999999999 699999999999884
|
|
| >TIGR03852 sucrose_gtfA sucrose phosphorylase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-23 Score=249.33 Aligned_cols=153 Identities=18% Similarity=0.217 Sum_probs=117.0
Q ss_pred CCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCC----CCCCCcccc-C
Q psy9001 1006 LLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF----DGTQACFFH-D 1079 (1351)
Q Consensus 1006 ~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~----dg~~~~yf~-~ 1079 (1351)
++|+|.|+++||| ++||+.|||+|||.+||++|+++ |+||+|+|+||||..|.+..... ++....||. .
T Consensus 36 LlPffps~sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~ 110 (470)
T TIGR03852 36 LLPFFPSTGDRGFAPMDYTEVDPAFGDWSDVEALSEK-----YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRY 110 (470)
T ss_pred ECCCCcCCCCCCcCchhhceeCcccCCHHHHHHHHHh-----hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEec
Confidence 4677888889999 99999999999999999999997 89999999999999984332211 223345554 1
Q ss_pred ------C-CC-------------CCCCC-----------CC-----CCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy9001 1080 ------G-PR-------------GTHPL-----------WD-----SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123 (1351)
Q Consensus 1080 ------~-~~-------------g~~~~-----------w~-----~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD 1123 (1351)
+ +. ..... |+ ..|||+.||+|+++|.++++||++. ||||||+|
T Consensus 111 ~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~i~~il~fwl~~-GvdgfRLD 189 (470)
T TIGR03852 111 KDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRFIRDNLENLAEH-GASIIRLD 189 (470)
T ss_pred ccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEe
Confidence 0 00 00011 21 2389999999999999999999975 99999999
Q ss_pred CcccccccCCCCCCCCCCCcccccCCc---CChhHHHHHHHHHHHHHhhCCCeEEEEccCC
Q psy9001 1124 GVTSMLYHNHGCGEGFSGHYDEYFGLN---VDTDALIYLMVANKFLHDKYPEIITIAEDVS 1181 (1351)
Q Consensus 1124 ~a~~m~~~~~g~~~~~~~~~~~~~g~~---~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~ 1181 (1351)
+++.+.+.. |++ ...+++.+++++++.+ ..|++++|+|.+.
T Consensus 190 Av~~l~K~~---------------Gt~c~~l~pet~~~l~~~r~~~--~~~~~~ll~E~~~ 233 (470)
T TIGR03852 190 AFAYAVKKL---------------GTNDFFVEPEIWELLDEVRDIL--APTGAEILPEIHE 233 (470)
T ss_pred cchhhcccC---------------CCCcccCChhHHHHHHHHHHHh--ccCCCEEEeHhhh
Confidence 999886432 111 1267899999999988 5679999999854
|
In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism. |
| >TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=235.00 Aligned_cols=212 Identities=13% Similarity=0.163 Sum_probs=137.5
Q ss_pred CCceEEEEecCCccCCCCCCCHHHHHH-hhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccC
Q psy9001 177 DNLKIYESHVGICTQEQKCASYEDFVR-VVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 255 (1351)
Q Consensus 177 ~~~vIYE~hvr~ft~~~~~G~~~gi~~-~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~ 255 (1351)
...+=+.+++.+.....+..-+..+.+ .+.+||++|||++ |||+|+|+ +|
T Consensus 50 ~a~~W~~~~P~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~----iwl~P~~~--------------------SG----- 100 (688)
T TIGR02455 50 IASVWFTAYPAAIIAPEGCSVLEALADDALWKALSEIGVQG----IHNGPIKL--------------------SG----- 100 (688)
T ss_pred hcCeeEEecchhhcCCCCCcHHHHhcChHHHHHHHHhCCCE----EEeCccee--------------------cc-----
Confidence 455667888888754333333444433 5689999999999 99999553 21
Q ss_pred CCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCcccccc-ccccccCCCCCCHHHHHHHHHHHHHcCC
Q psy9001 256 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYL-VDECHKAGLFGTPEQLKYLVDECHKAGL 334 (1351)
Q Consensus 256 s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~-~d~~~id~~~G~~~efk~LV~~~H~~GI 334 (1351)
..|||+-+-.. ...|. +| +.|||+|||.+||++||++||++||
T Consensus 101 ----gi~g~~~tP~~-------------------------------D~gyDi~d-~~Idp~~GT~eDf~~L~~~Ah~~G~ 144 (688)
T TIGR02455 101 ----GIRGREFTPSI-------------------------------DGNFDRIS-FDIDPLLGSEEELIQLSRMAAAHNA 144 (688)
T ss_pred ----cccccCCCCCC-------------------------------CCCCCccc-CccCcccCCHHHHHHHHHHHHHCCC
Confidence 12554432211 11232 23 4667999999999999999999999
Q ss_pred EEEEEeeccccccCCcCCcccC-CCCCCcCcc-------------cCCCC------------------------------
Q psy9001 335 YVLLDVVHSHASKNVLDGLNEF-DGTQACFFH-------------DGPRG------------------------------ 370 (1351)
Q Consensus 335 ~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~-------------~~~~~------------------------------ 370 (1351)
+||+|+|+|||+.+++..+... ++.-+.||+ +.+.+
T Consensus 145 ~vi~DlVpnHTs~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~ 224 (688)
T TIGR02455 145 ITIDDIIPAHTGKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFF 224 (688)
T ss_pred EEEEEeCCCCCCCCcchHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceec
Confidence 9999999999999876222111 222233451 00111
Q ss_pred ----CCCCCC------------------------CccCCCCCHH--HHHHHH-HHHHHHHHHcCCCcccccccccccccc
Q psy9001 371 ----THPLWD------------------------SRLFNYSEIE--VLRFLL-SNLRWYLDEYQFDGFRFDGVTSMLYHN 419 (1351)
Q Consensus 371 ----~~~~w~------------------------~~~ln~~~p~--v~~~l~-~~l~~W~~e~~vDGfR~D~a~~~~~~~ 419 (1351)
+-.+|. -++||+.||. |++.|+ +++++|++ .|+||||+|++..|.-..
T Consensus 225 ~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~-lG~~GfRLDAvpfLg~e~ 303 (688)
T TIGR02455 225 EPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC-LGARGLRLDANGFLGVER 303 (688)
T ss_pred CCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH-hccccceeccccceeeec
Confidence 112442 1489999999 999999 89999999 899999999999884322
Q ss_pred CCCCCCCCCCccccCCCccCchHHHHHHHHHHHHH--hhCCCeEEEEEcC
Q psy9001 420 HGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLH--DKYPEIITIAEDV 467 (1351)
Q Consensus 420 ~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~--~~~P~~~~iaE~~ 467 (1351)
...++++ .++..|++.+++.|. ..+|+.++++|..
T Consensus 304 ~~~~~~~-------------~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~n 340 (688)
T TIGR02455 304 RAEGTAW-------------SEGHPLSLTGNQLIAGAIRKAGGFSFQELN 340 (688)
T ss_pred CCCCCCC-------------CccCHHHHHHHHHHHHhhhcCCeeEeeecc
Confidence 1111111 123455666666665 5566666666653
|
Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits. |
| >PLN02784 alpha-amylase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-22 Score=248.70 Aligned_cols=189 Identities=20% Similarity=0.274 Sum_probs=134.2
Q ss_pred CCceEEEEecCCcc---CCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccc
Q psy9001 177 DNLKIYESHVGICT---QEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 253 (1351)
Q Consensus 177 ~~~vIYE~hvr~ft---~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~ 253 (1351)
.....||+-+..|- +.+. .-|++|+++ ||||++||||+ |||+|+++ .
T Consensus 497 ~~~~~~eVmlQgF~Wds~~dg-~w~~~I~ek-ldyL~~LG~ta----IWLpP~~~--------------------s---- 546 (894)
T PLN02784 497 GTGSGFEILCQGFNWESHKSG-RWYMELGEK-AAELSSLGFTV----VWLPPPTE--------------------S---- 546 (894)
T ss_pred cccCCceEEEEeEEcCcCCCC-chHHHHHHH-HHHHHHhCCCE----EEeCCCCC--------------------C----
Confidence 34567888888773 3331 237899988 99999999999 99999432 2
Q ss_pred cCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcC
Q psy9001 254 AESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 333 (1351)
Q Consensus 254 ~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~G 333 (1351)
..++||++.||| .++ ++||+.+|||+||++||++|
T Consensus 547 -----~s~~GY~p~D~y---------------------~ld-------------------s~yGT~~ELk~LI~a~H~~G 581 (894)
T PLN02784 547 -----VSPEGYMPKDLY---------------------NLN-------------------SRYGTIDELKDLVKSFHEVG 581 (894)
T ss_pred -----CCCCCcCccccc---------------------ccC-------------------cCcCCHHHHHHHHHHHHHCC
Confidence 124899999999 666 89999999999999999999
Q ss_pred CEEEEEeeccccccCCc--CCc-ccCCCCC----------CcCccc-CCCCCCCCCC-CccCCCCCHHHHHHHHHHHHHH
Q psy9001 334 LYVLLDVVHSHASKNVL--DGL-NEFDGTQ----------ACFFHD-GPRGTHPLWD-SRLFNYSEIEVLRFLLSNLRWY 398 (1351)
Q Consensus 334 I~VILDvV~NH~~~~~~--~~~-~~f~g~~----------~~yy~~-~~~~~~~~w~-~~~ln~~~p~v~~~l~~~l~~W 398 (1351)
|+||+|+|+||++.... .+. ..|.+.. ...|.. +..-...+|. .++||+.||+||+.|.+.++||
T Consensus 582 IkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL 661 (894)
T PLN02784 582 IKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWM 661 (894)
T ss_pred CEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999985421 111 1122210 000110 0000001122 3689999999999999999999
Q ss_pred HHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q psy9001 399 LDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 470 (1351)
Q Consensus 399 ~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~ 470 (1351)
++++||||||+|+|..+ + ..|+ ++.+++..| .+++||.|.+.
T Consensus 662 ~~e~G~DGfRLDaVKgf-----------~---------------~~Fv---keyv~a~kp-~F~VGEyWd~~ 703 (894)
T PLN02784 662 RKEVGYDGWRLDFVRGF-----------W---------------GGYV---KDYMEASEP-YFAVGEYWDSL 703 (894)
T ss_pred HhccCCCEEEEeccCCC-----------C---------------HHHH---HHHHhccCC-cEEEEEecccc
Confidence 99999999999999754 1 1233 333445556 79999999873
|
|
| >TIGR03852 sucrose_gtfA sucrose phosphorylase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-22 Score=239.76 Aligned_cols=179 Identities=15% Similarity=0.183 Sum_probs=132.6
Q ss_pred CCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccc
Q psy9001 192 EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWL 271 (1351)
Q Consensus 192 ~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~ 271 (1351)
.+..|++.+++++ ||++ ||++ |||||+|+ + + .+.||+++||+
T Consensus 13 g~glgdl~g~l~~---yL~~-~v~~----i~LlPffp--------------------s--~-------sD~GYdv~DY~- 54 (470)
T TIGR03852 13 GKNLKELNKVLEN---YFKD-AVGG----VHLLPFFP--------------------S--T-------GDRGFAPMDYT- 54 (470)
T ss_pred CCChhhHHHHHHH---HHHH-hCCE----EEECCCCc--------------------C--C-------CCCCcCchhhc-
Confidence 3567888888876 9999 7999 99999664 1 1 13799999999
Q ss_pred cchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcC
Q psy9001 272 MDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 351 (1351)
Q Consensus 272 ~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~ 351 (1351)
+++ |+||+.+||++|+++ |+||+|+|+||||.+|+|
T Consensus 55 --------------------~VD-------------------P~~Gt~~Df~~L~~~-----~kvmlDlV~NHtS~~h~W 90 (470)
T TIGR03852 55 --------------------EVD-------------------PAFGDWSDVEALSEK-----YYLMFDFMINHISRQSEY 90 (470)
T ss_pred --------------------eeC-------------------cccCCHHHHHHHHHh-----hhHHhhhcccccccchHH
Confidence 666 999999999999987 899999999999999987
Q ss_pred CcccCCC-CCC---cCcc-c------C-C-------------CCCCCC-----------CC-----CccCCCCCHHHHHH
Q psy9001 352 GLNEFDG-TQA---CFFH-D------G-P-------------RGTHPL-----------WD-----SRLFNYSEIEVLRF 390 (1351)
Q Consensus 352 ~~~~f~g-~~~---~yy~-~------~-~-------------~~~~~~-----------w~-----~~~ln~~~p~v~~~ 390 (1351)
+.....+ .++ .||. . + + ...+.. |+ ..+||+.||+|+++
T Consensus 91 Fq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~ 170 (470)
T TIGR03852 91 YQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRF 170 (470)
T ss_pred HHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHH
Confidence 6543322 122 3443 1 0 0 000011 21 25899999999999
Q ss_pred HHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcC
Q psy9001 391 LLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV 467 (1351)
Q Consensus 391 l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~ 467 (1351)
|.++++||++ .||||||+|++..+.... |. .. -....++.++++.+++.+ ..|++++|+|.+
T Consensus 171 i~~il~fwl~-~GvdgfRLDAv~~l~K~~-Gt----~c-------~~l~pet~~~l~~~r~~~--~~~~~~ll~E~~ 232 (470)
T TIGR03852 171 IRDNLENLAE-HGASIIRLDAFAYAVKKL-GT----ND-------FFVEPEIWELLDEVRDIL--APTGAEILPEIH 232 (470)
T ss_pred HHHHHHHHHH-cCCCEEEEecchhhcccC-CC----Cc-------ccCChhHHHHHHHHHHHh--ccCCCEEEeHhh
Confidence 9999999997 799999999999884221 10 00 011246789999999877 567999999986
|
In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism. |
| >PRK13840 sucrose phosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=227.56 Aligned_cols=180 Identities=13% Similarity=0.153 Sum_probs=132.6
Q ss_pred CCCHHHHHHhhhH-HHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccc
Q psy9001 195 CASYEDFVRVVIP-RIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMD 273 (1351)
Q Consensus 195 ~G~~~gi~~~~L~-yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~ 273 (1351)
.|+++|++++ || ||++| |++ |||||+|+ |..++ ..||+++||+
T Consensus 16 ~GdL~gl~~k-Ld~yL~~l-v~~----vhllPff~-----------------------psp~s----D~GYdv~DY~--- 59 (495)
T PRK13840 16 DGGLKSLTAL-LDGRLDGL-FGG----VHILPFFY-----------------------PIDGA----DAGFDPIDHT--- 59 (495)
T ss_pred CCCHhHHHHH-HHHHHHHH-hCe----EEECCCcc-----------------------CCCCC----CCCCCCcChh---
Confidence 4899999998 99 59999 999 99999663 22222 3799999999
Q ss_pred hhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCc
Q psy9001 274 KEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 353 (1351)
Q Consensus 274 ~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~ 353 (1351)
+++ |+||+.+||++|++ ||+||||+|+||||.+|+|+.
T Consensus 60 ------------------~VD-------------------P~fGt~eDf~~L~~-----giklmlDlV~NHtS~~h~WFq 97 (495)
T PRK13840 60 ------------------KVD-------------------PRLGDWDDVKALGK-----THDIMADLIVNHMSAESPQFQ 97 (495)
T ss_pred ------------------hcC-------------------cccCCHHHHHHHHh-----CCeEEEEECCCcCCCCcHHHH
Confidence 666 99999999999995 999999999999999987764
Q ss_pred ccC-CCCCC---cCcccCC-------------------CCC-CC-----------CCC-----CccCCCCCHHHHHHHHH
Q psy9001 354 NEF-DGTQA---CFFHDGP-------------------RGT-HP-----------LWD-----SRLFNYSEIEVLRFLLS 393 (1351)
Q Consensus 354 ~~f-~g~~~---~yy~~~~-------------------~~~-~~-----------~w~-----~~~ln~~~p~v~~~l~~ 393 (1351)
... .+.++ .||...+ .+. +. .|. -++||+.||+|+++|++
T Consensus 98 d~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~V~~~i~~ 177 (495)
T PRK13840 98 DVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAAGWEYLMS 177 (495)
T ss_pred HHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCHHHHHHHHH
Confidence 322 22222 2332100 000 11 122 26899999999999999
Q ss_pred HHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCC
Q psy9001 394 NLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVS 468 (1351)
Q Consensus 394 ~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~ 468 (1351)
+++||++ .||||||+|++..+.... | .. + ....+...||+++++.++.. +..+|+|.+.
T Consensus 178 il~fwl~-~GVDgfRLDAv~~l~K~~-g--t~--------c--~~~pe~~~~l~~lr~~~~~~--~~~ll~Ei~~ 236 (495)
T PRK13840 178 ILDRFAA-SHVTLIRLDAAGYAIKKA-G--TS--------C--FMIPETFEFIDRLAKEARAR--GMEVLVEIHS 236 (495)
T ss_pred HHHHHHH-CCCCEEEEechhhhhcCC-C--CC--------c--CCChHHHHHHHHHHHHhhhc--CCEEEEeCcc
Confidence 9999998 799999999998774221 1 00 0 01236778999999999765 5668999764
|
|
| >TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-20 Score=222.29 Aligned_cols=184 Identities=14% Similarity=0.126 Sum_probs=131.0
Q ss_pred cCcceeeecccCCCCCCCCCCc-ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcC-
Q psy9001 992 LSQVKLVVRNQHGHLLDRFGTP-EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE- 1068 (1351)
Q Consensus 992 ~~~~~l~~~~~~G~~~~~~~sp-~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~- 1068 (1351)
++.+||.+..+-|.+...-..| ...|| ++| +.|||+|||.+||++||++||++||+||+|+|+||||..|. ....
T Consensus 88 V~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghd-F~lAr 165 (688)
T TIGR02455 88 VQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGAD-FRLAE 165 (688)
T ss_pred CCEEEeCcceecccccccCCCCCCCCCCCccc-CccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcc-hHHHh
Confidence 3455654444444443333336 46899 999 59999999999999999999999999999999999999984 3111
Q ss_pred -CCCCCCcccc-------------C---C-------------------------------CCCCCCCC--CC--------
Q psy9001 1069 -FDGTQACFFH-------------D---G-------------------------------PRGTHPLW--DS-------- 1090 (1351)
Q Consensus 1069 -~dg~~~~yf~-------------~---~-------------------------------~~g~~~~w--~~-------- 1090 (1351)
-++..+.||+ . . +..+.++| ++
T Consensus 166 ~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~ 245 (688)
T TIGR02455 166 LAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGK 245 (688)
T ss_pred hcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCceecccccCCCcc
Confidence 1344455661 0 1 11123356 21
Q ss_pred --------------CCCCCCCHH--HHHHHH-HHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCCh
Q psy9001 1091 --------------RLFNYSEIE--VLRFLL-SNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT 1153 (1351)
Q Consensus 1091 --------------~dlN~~np~--Vr~~li-d~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~ 1153 (1351)
.+||+.||. ||+.|+ +++++|++- |+||||+|++..|.......+. ...
T Consensus 246 ~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~l-G~~GfRLDAvpfLg~e~~~~~~-------------~~~ 311 (688)
T TIGR02455 246 TRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDCL-GARGLRLDANGFLGVERRAEGT-------------AWS 311 (688)
T ss_pred chhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHHh-ccccceeccccceeeecCCCCC-------------CCC
Confidence 189999999 999999 999999995 9999999999988532221111 124
Q ss_pred hHHHHHHHHHHHHH--hhCCCeEEEEccCCCCCCcccccc
Q psy9001 1154 DALIYLMVANKFLH--DKYPEIITIAEDVSGMPASCRPVT 1191 (1351)
Q Consensus 1154 ~~~~fl~~~~~~l~--~~~Pd~ilIaE~~~~~p~~~~p~~ 1191 (1351)
++..+++.+++.|. ..+|+.++++|.-.....+.....
T Consensus 312 e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~~~d~~~~~g 351 (688)
T TIGR02455 312 EGHPLSLTGNQLIAGAIRKAGGFSFQELNLTIDDIAAMSH 351 (688)
T ss_pred ccCHHHHHHHHHHHHhhhcCCeeEeeeccCCHHHHHHHhC
Confidence 57788899999998 889999999997544444444444
|
Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits. |
| >KOG0471|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-20 Score=230.99 Aligned_cols=169 Identities=21% Similarity=0.234 Sum_probs=131.4
Q ss_pred CCCCCCceEEEEecCCcc--CCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccc
Q psy9001 173 PKKPDNLKIYESHVGICT--QEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 250 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~ft--~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~ 250 (1351)
+.+|+..+|||+.+++|. .....|+++|+.++ |+|||+||+|+ |||+|+++ .
T Consensus 12 ~~~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~k-ldyi~~lG~ta----iWisP~~~--------------------s- 65 (545)
T KOG0471|consen 12 PDWWKTESIYQIYPDSFADSDGDGVGDLKGITSK-LDYIKELGFTA----IWLSPFTK--------------------S- 65 (545)
T ss_pred chhhhcCceeEEeccccccccCCCccccccchhh-hhHHHhcCCce----EEeCCCcC--------------------C-
Confidence 456889999999999995 44667999999999 99999999999 99999553 2
Q ss_pred ccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHH
Q psy9001 251 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 330 (1351)
Q Consensus 251 ~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H 330 (1351)
+ .-++||++.||+ .+. |+|||.++|++||+++|
T Consensus 66 -~------~~~~GY~~~d~~---------------------~l~-------------------p~fGt~edf~~Li~~~h 98 (545)
T KOG0471|consen 66 -S------KPDFGYDASDLE---------------------QLR-------------------PRFGTEEDFKELILAMH 98 (545)
T ss_pred -C------HHHhccCccchh---------------------hhc-------------------ccccHHHHHHHHHHHHh
Confidence 1 125899999999 666 99999999999999999
Q ss_pred HcCCEEEEEeeccccccCCcCCcccCCCCCC--cCcccCCCC--------CCCCC-------------------C-----
Q psy9001 331 KAGLYVLLDVVHSHASKNVLDGLNEFDGTQA--CFFHDGPRG--------THPLW-------------------D----- 376 (1351)
Q Consensus 331 ~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~--~yy~~~~~~--------~~~~w-------------------~----- 376 (1351)
++||++|+|+|+||++..++|+......... .+|...+.. ...+| .
T Consensus 99 ~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~ 178 (545)
T KOG0471|consen 99 KLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAV 178 (545)
T ss_pred hcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccchhh
Confidence 9999999999999999777665422211111 111110000 00111 1
Q ss_pred -CccCCCCCHHHHHHHHHHHH-HHHHHcCCCcccccccccc
Q psy9001 377 -SRLFNYSEIEVLRFLLSNLR-WYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 377 -~~~ln~~~p~v~~~l~~~l~-~W~~e~~vDGfR~D~a~~~ 415 (1351)
.+++|+.+|+|++.|.++++ +|++ +||||||+|++..+
T Consensus 179 ~~pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~ 218 (545)
T KOG0471|consen 179 LQPDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGY 218 (545)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEccccc
Confidence 25899999999999999999 7777 89999999999977
|
|
| >KOG0471|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-18 Score=211.05 Aligned_cols=165 Identities=23% Similarity=0.277 Sum_probs=118.2
Q ss_pred CCceEEEeecCCcccCCCcccccccccccccceeccCCCcccccccccccccCC-ceEEEecCCCCCCCCcccccCccce
Q psy9001 889 ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDF-GKWELVLPPNPDGDFNNWNREEFAY 967 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~-giwel~ip~~~~g~~Y~~~~~~~~y 967 (1351)
....|||.-.+.|..+...|. |+.++++.++++++.+|. .+|.
T Consensus 16 ~~~~~YQI~~~sF~~s~~d~~---------------G~~~GI~~kldyi~~lG~taiWi--------------------- 59 (545)
T KOG0471|consen 16 KTESIYQIYPDSFADSDGDGV---------------GDLKGITSKLDYIKELGFTAIWL--------------------- 59 (545)
T ss_pred hcCceeEEeccccccccCCCc---------------cccccchhhhhHHHhcCCceEEe---------------------
Confidence 567799999999986654442 777777777777766543 2333
Q ss_pred ecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCc-ccccc-ccccccccCCCCCHHHHHHHHHHHHHc
Q psy9001 968 KKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTP-EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKA 1045 (1351)
Q Consensus 968 ~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp-~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~ 1045 (1351)
+|++.++ .+||| +.||+.++|+|||.+||++||+++|++
T Consensus 60 ---------------------------------------sP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~ 100 (545)
T KOG0471|consen 60 ---------------------------------------SPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKL 100 (545)
T ss_pred ---------------------------------------CCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhc
Confidence 2334444 46999 999999999999999999999999999
Q ss_pred CCEEEEEeecccccCCccccCcCCCCCCC--cccc-CCCC-------CCCCCC-------------------------CC
Q psy9001 1046 GLYVLLDVVHSHASKNVLDGLNEFDGTQA--CFFH-DGPR-------GTHPLW-------------------------DS 1090 (1351)
Q Consensus 1046 GI~VILDVV~NHts~~~~~~l~~~dg~~~--~yf~-~~~~-------g~~~~w-------------------------~~ 1090 (1351)
||++|+|+|+||++..|.+.......... .+|. .+.. ....+| ..
T Consensus 101 gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~~ 180 (545)
T KOG0471|consen 101 GIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVLQ 180 (545)
T ss_pred ceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccchhhcC
Confidence 99999999999999876433222111111 1111 1110 001122 01
Q ss_pred CCCCCCCHHHHHHHHHHHH-HHHHHhCCCeEEEcCccccc
Q psy9001 1091 RLFNYSEIEVLRFLLSNLR-WYLEEYQFDGFRFDGVTSML 1129 (1351)
Q Consensus 1091 ~dlN~~np~Vr~~lid~l~-yWl~eygVDGFRfD~a~~m~ 1129 (1351)
.+||+++|+|++.|.++++ +|++ +||||||+|++.++.
T Consensus 181 pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~~ 219 (545)
T KOG0471|consen 181 PDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGYA 219 (545)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEcccccc
Confidence 2899999999999999999 7766 699999999999884
|
|
| >TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-17 Score=207.80 Aligned_cols=172 Identities=17% Similarity=0.241 Sum_probs=126.7
Q ss_pred CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccch
Q psy9001 195 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 274 (1351)
Q Consensus 195 ~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~ 274 (1351)
-+||.+++++ ||||++||||+ |||+|||+ . ..+| +|||+++||+
T Consensus 12 ~~tf~~~~~~-L~YL~~LGv~~----V~lsPi~~--------------------a---~~gs----~hGYdv~D~~---- 55 (825)
T TIGR02401 12 GFTFDDAAAL-LPYLKSLGVSH----LYLSPILT--------------------A---VPGS----THGYDVVDHS---- 55 (825)
T ss_pred CCCHHHHHHh-hHHHHHcCCCE----EEeCcCcc--------------------C---CCCC----CCCCCCCCCC----
Confidence 4799999988 99999999999 99999663 1 1222 4999999999
Q ss_pred hhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccC---CcC
Q psy9001 275 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLD 351 (1351)
Q Consensus 275 e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~---~~~ 351 (1351)
+++ |.+|+.++|++||++||++||+||||+|+||++.+ +.|
T Consensus 56 -----------------~id-------------------p~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a~~~~~n~w 99 (825)
T TIGR02401 56 -----------------EIN-------------------PELGGEEGLRRLSEAARARGLGLIVDIVPNHMAVHLEQNPW 99 (825)
T ss_pred -----------------CcC-------------------CCCCCHHHHHHHHHHHHHCCCEEEEEecccccccccccChH
Confidence 666 99999999999999999999999999999999976 221
Q ss_pred CcccC-CCCCC-------------------------------------------------cCccc----CCCC-------
Q psy9001 352 GLNEF-DGTQA-------------------------------------------------CFFHD----GPRG------- 370 (1351)
Q Consensus 352 ~~~~f-~g~~~-------------------------------------------------~yy~~----~~~~------- 370 (1351)
..... .|..+ .||.. .+..
T Consensus 100 f~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ty~~il~~ 179 (825)
T TIGR02401 100 WWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPGTLPELEVL 179 (825)
T ss_pred HHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCccchhhhhhh
Confidence 11000 01111 02221 1000
Q ss_pred -----CC--------------CCCC----------------CccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 371 -----TH--------------PLWD----------------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 371 -----~~--------------~~w~----------------~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
.. ..|- -..++.++|+|.+.....+..|+++..|||+|+|.+..+
T Consensus 180 ~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGlRIDh~dGL 259 (825)
T TIGR02401 180 EDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGLRIDHIDGL 259 (825)
T ss_pred ccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceEEecccccc
Confidence 00 1232 135677899999999999999999888999999998876
Q ss_pred ccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEE
Q psy9001 416 LYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 465 (1351)
Q Consensus 416 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE 465 (1351)
.++-.||+.+++.+ .|+..++.|
T Consensus 260 ------------------------~dP~~Yl~rLr~~~---~~~~yivvE 282 (825)
T TIGR02401 260 ------------------------ADPEGYLRRLRELV---GPARYLVVE 282 (825)
T ss_pred ------------------------CChHHHHHHHHHhc---CCCceEEEE
Confidence 13567899998653 446788888
|
This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis. |
| >smart00642 Aamy Alpha-amylase domain | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-17 Score=173.61 Aligned_cols=95 Identities=23% Similarity=0.281 Sum_probs=79.9
Q ss_pred EEecCCcc--CCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCcc
Q psy9001 183 ESHVGICT--QEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQA 260 (1351)
Q Consensus 183 E~hvr~ft--~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~ 260 (1351)
|+.++.|. .....|+|++++++ |+||++||||+ |||+|+|+ . +.. ...
T Consensus 1 qi~~~~F~~~~~~~~G~~~gi~~~-l~yl~~lG~~~----I~l~Pi~~--------------------~--~~~---~~~ 50 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQGIIEK-LDYLKDLGVTA----IWLSPIFE--------------------S--PQG---YPS 50 (166)
T ss_pred CeeeccccCCCCCCCcCHHHHHHH-HHHHHHCCCCE----EEECccee--------------------C--CCC---CCC
Confidence 35567773 44568999999999 99999999999 99999553 2 111 124
Q ss_pred ccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q psy9001 261 LVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDV 340 (1351)
Q Consensus 261 ~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDv 340 (1351)
+|||++.+|+ +++ |+||+++||++||++||++||+||||+
T Consensus 51 ~~gY~~~d~~---------------------~i~-------------------~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 51 YHGYDISDYK---------------------QID-------------------PRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred CCCcCccccC---------------------CCC-------------------cccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5999999999 666 899999999999999999999999999
Q ss_pred ecccccc
Q psy9001 341 VHSHASK 347 (1351)
Q Consensus 341 V~NH~~~ 347 (1351)
|+||++.
T Consensus 91 V~NH~~~ 97 (166)
T smart00642 91 VINHTSD 97 (166)
T ss_pred CCCCCCC
Confidence 9999988
|
|
| >PF14872 GHL5: Hypothetical glycoside hydrolase 5 | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-16 Score=183.75 Aligned_cols=329 Identities=20% Similarity=0.228 Sum_probs=210.6
Q ss_pred ccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEEecCCC-CccceeeeeeCCCCC-CC
Q psy9001 88 REEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPV-VGHAYEQRIWNPKPQ-DK 165 (1351)
Q Consensus 88 ~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~-~~~~~~~~~~~p~~~-~~ 165 (1351)
+...|+++.+.-.|-+ +.|...|+ +...|+.|..+..+.+|+...+.||.|.++.-.-- ..-+||......... ..
T Consensus 81 R~~~~L~~qgey~WgV-v~GlraGt-r~q~GsfYwLry~d~~~~~~~I~DpLaySlPyGvfaPAElYDl~~lq~~RaD~~ 158 (811)
T PF14872_consen 81 RDRLPLERQGEYHWGV-VAGLRAGT-RDQAGSFYWLRYRDQDGEVQIIRDPLAYSLPYGVFAPAELYDLERLQRRRADLD 158 (811)
T ss_pred EEEEeeccccceeeeh-hhccCCCC-cccccceEEEEEccCCCCeEEecccccccCcccccChHHhhchHhHhhhhhhHH
Confidence 3456777777778877 77899995 88899999999998889988999999998833211 112333211111000 00
Q ss_pred -CccC------CCCCCCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHH---------------HcCCCcCceeEEE
Q psy9001 166 -HKWT------SSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIV---------------KQGMAIPDKWIEL 223 (1351)
Q Consensus 166 -~~w~------~~~p~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk---------------~LGvt~~~~~I~L 223 (1351)
|.-. +.-+....+..|.|+||+..|++ ||+.|+++- -..|. =.|+++ |+|
T Consensus 159 Yf~~~~a~~~~~~~~rv~~P~nILQiHv~TAsp~---GtlaGLT~i-yqria~K~~~g~pLtp~E~ny~GYDA----vQL 230 (811)
T PF14872_consen 159 YFEATGAADPSDGIPRVPAPRNILQIHVGTASPE---GTLAGLTRI-YQRIADKLAAGEPLTPAEENYVGYDA----VQL 230 (811)
T ss_pred HHHhhccccCCCCCcccCCCceeEEEecCCCCCC---cchHHHHHH-HHHHHHHHhcCCCCChhHHhcccccc----eee
Confidence 0000 11123467899999999999887 788888762 33332 269999 999
Q ss_pred eecccccccCcc----ceEEEcccccccc-----cccccc-------CCCCccccCcccccccccchhhhcccccCCCCc
Q psy9001 224 LKKFKDEDWNMG----NIVHTLTNRRYME-----KTVAYA-------ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPS 287 (1351)
Q Consensus 224 ~Pif~~~~~~~~----~ii~~~~~~~~~e-----~~~~~~-------~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~ 287 (1351)
|||=+..++..+ .-...+......+ .++... .-.+..||||++.= -||.++||+
T Consensus 231 LPiEPtieyr~e~~~~h~Ff~~~~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I----------~GsaAtNPa 300 (811)
T PF14872_consen 231 LPIEPTIEYRAENEPGHEFFSIRPEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVI----------LGSAATNPA 300 (811)
T ss_pred eccCCcceeccccCCCCceeeecccccccccccccccccCceEEEEecCCCccccCcceee----------eccCCCCHH
Confidence 996544333322 1111111000000 000000 01245789999843 457777777
Q ss_pred hhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHH---cCCEEEEEeeccccccCCcCCcccCCCCCCcCc
Q psy9001 288 LIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK---AGLYVLLDVVHSHASKNVLDGLNEFDGTQACFF 364 (1351)
Q Consensus 288 ~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~---~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy 364 (1351)
+ . .-++++|+-.||..||. ..|+||+|+||.|...+...-+. ..|+
T Consensus 301 l----L---------------------~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGHADNQ~~~LLn------~~fl 349 (811)
T PF14872_consen 301 L----L---------------------ETLRPDELVDFIATLHNFPTGPIQVIYDLVYGHADNQALDLLN------RRFL 349 (811)
T ss_pred H----H---------------------hcCCcHHHHHHHHHHhcCCCCCeEEEEeeecccccchhhHhhh------hhhc
Confidence 4 1 12579999999999998 56999999999999877432221 2222
Q ss_pred ccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHH
Q psy9001 365 HDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALI 444 (1351)
Q Consensus 365 ~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 444 (1351)
. ++ +=-|.++|+.+|.||..|++.-|.=++ +|+||.|+|.+...-+. +...+.+..+. .
T Consensus 350 k-GP-----nMYGQdlnhq~P~VRAILLEmQRRK~n-~GaDGIRVDGgQDFk~f-------------nplt~~ve~DD-~ 408 (811)
T PF14872_consen 350 K-GP-----NMYGQDLNHQNPVVRAILLEMQRRKIN-TGADGIRVDGGQDFKFF-------------NPLTGRVEYDD-A 408 (811)
T ss_pred c-CC-----ccccccccccChHHHHHHHHHHHhhcc-cCCceeEecccccceee-------------cccccccccch-H
Confidence 2 11 122457999999999999999999988 99999999987644221 22223332222 5
Q ss_pred HHHHHHHHHHhhCCC---eEEEEEcCCCCCCcccccccCCCCCCCcCCcCCCCCCCcHHHHHHHHHHhh
Q psy9001 445 YLMVANKFLHDKYPE---IITIAEDVSGMPASCRPVTEGGTGFDYRLEIRPDMSDMTVGTFDAAMNTTE 510 (1351)
Q Consensus 445 f~~~~~~~v~~~~P~---~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~~~~d~~~~sl~~f~k~L~~Lr 510 (1351)
|+..|.+.+..+-+. .++|-|+...||.- ..+..+-||+||.++
T Consensus 409 YL~~M~dvvQ~I~~~~r~~f~IfEDGRPWP~e----------------------gWE~~StYr~lie~~ 455 (811)
T PF14872_consen 409 YLLAMSDVVQEIGGARRLPFTIFEDGRPWPQE----------------------GWEEISTYRDLIELR 455 (811)
T ss_pred HHHHHHHHHhhccccceeEEEEecCCCcCCcc----------------------chHHHHHHHHHHHhC
Confidence 889999998877653 57888876666542 234567799999876
|
|
| >cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-16 Score=152.18 Aligned_cols=92 Identities=35% Similarity=0.671 Sum_probs=81.8
Q ss_pred ccCceeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCc
Q psy9001 65 CHKAGLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 139 (1351)
Q Consensus 65 ~~~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPy 139 (1351)
+..+|++|+ |++|+|+||||+|+...++|+|.++|+|+++||++..|.+.++||++|||+|+..+|+..+++|||
T Consensus 2 ~~~~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPy 81 (99)
T cd02854 2 QEDGGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAW 81 (99)
T ss_pred cCCCeEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcc
Confidence 456799999 999999999999998889999988999999999988887889999999999998889999999999
Q ss_pred ceEEecCCCCccceeeee
Q psy9001 140 ATYVTEPPVVGHAYEQRI 157 (1351)
Q Consensus 140 A~~~~~~~~~~~~~~~~~ 157 (1351)
|++++.++. ...+++++
T Consensus 82 A~~~~~~~~-~~~~~~~~ 98 (99)
T cd02854 82 IKYVTQDKE-TALYDGVF 98 (99)
T ss_pred eeEEEeCCC-CcceeeEE
Confidence 999999885 33455544
|
Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi |
| >TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.8e-15 Score=184.87 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=111.9
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCc--cccCc-----CCCCCCCc----------
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV--LDGLN-----EFDGTQAC---------- 1075 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~--~~~l~-----~~dg~~~~---------- 1075 (1351)
++||| ++||+.|||+|||.++|++||++||++||+||||+|+||++.+. ..++. ...+....
T Consensus 45 s~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~ 124 (825)
T TIGR02401 45 STHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMAVHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLG 124 (825)
T ss_pred CCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccccccccChHHHHHHHhCCCCCccCceEEeCCCCC
Confidence 56999 99999999999999999999999999999999999999999762 11111 00111112
Q ss_pred ------------------------------------cccCC----CCC------------C--------------CCCCC
Q psy9001 1076 ------------------------------------FFHDG----PRG------------T--------------HPLWD 1089 (1351)
Q Consensus 1076 ------------------------------------yf~~~----~~g------------~--------------~~~w~ 1089 (1351)
||+.. +.. . ...|-
T Consensus 125 ~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr 204 (825)
T TIGR02401 125 GDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPGTLPELEVLEDVPGDGDALKKLLERQHYRLTWWR 204 (825)
T ss_pred CCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCccchhhhhhhccccCChhhHHHHHHHHHHHhhhhh
Confidence 22210 000 0 00231
Q ss_pred ----------------CCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCCh
Q psy9001 1090 ----------------SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT 1153 (1351)
Q Consensus 1090 ----------------~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~ 1153 (1351)
-..++.++|+|.++....+..|+++.-|||+|+|.+..+ .
T Consensus 205 ~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGlRIDh~dGL------------------------~ 260 (825)
T TIGR02401 205 VAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGLRIDHIDGL------------------------A 260 (825)
T ss_pred ccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceEEecccccc------------------------C
Confidence 125788999999999999999999977999999999877 2
Q ss_pred hHHHHHHHHHHHHHhhCCCeEEEEc-cCCCCCCcccccc-cCCccccc
Q psy9001 1154 DALIYLMVANKFLHDKYPEIITIAE-DVSGMPASCRPVT-EGGTGFDY 1199 (1351)
Q Consensus 1154 ~~~~fl~~~~~~l~~~~Pd~ilIaE-~~~~~p~~~~p~~-~gg~GFdy 1199 (1351)
++-.||+.+++.+ .|+.+++.| .+.....+...|. +|..|+++
T Consensus 261 dP~~Yl~rLr~~~---~~~~yivvEKIl~~~E~Lp~~W~v~GTtGYdf 305 (825)
T TIGR02401 261 DPEGYLRRLRELV---GPARYLVVEKILAPGEHLPADWPVDGTTGYDF 305 (825)
T ss_pred ChHHHHHHHHHhc---CCCceEEEEEeccCCCcCCCCCCcCcccCChh
Confidence 3667888887553 456788888 6655555544443 34457664
|
This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis. |
| >cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=141.29 Aligned_cols=95 Identities=27% Similarity=0.519 Sum_probs=78.4
Q ss_pred cCCcEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcccccccccccCCCC
Q psy9001 703 ADNSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKLLERDPY 781 (1351)
Q Consensus 703 ~~~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1351)
++++++||+|||.|++|+|+|+ |+| +
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~GdFn~W---------------------------------------------------~-- 29 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLIGDFNNW---------------------------------------------------D-- 29 (99)
T ss_pred CCCeEEEEEECCCCCEEEEEccCCCC---------------------------------------------------C--
Confidence 4667999999999999999994 553 1
Q ss_pred CCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEEEecCCC
Q psy9001 782 LNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPV 860 (1351)
Q Consensus 782 ~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~~~~ 860 (1351)
+..++|++ +.|+| +++|+++++|.+.++||++|+|+|+..+| ++.+++||||++++++++
T Consensus 30 --~~~~~m~k~~~G~W--------------~~~i~~~~~~~~~~~~g~~Yky~i~~~~G---~~~~~~DPyA~~~~~~~~ 90 (99)
T cd02854 30 --RNAHPLKKDEFGVW--------------EITIPPNEDGSPAIPHGSKIKVRMVTPSG---EWIDRIPAWIKYVTQDKE 90 (99)
T ss_pred --CcCcccEECCCCEE--------------EEEECCcccccccCCCCCEEEEEEEeCCC---CEEEEcCcceeEEEeCCC
Confidence 22356865 59999 99999998888889999999999999888 799999999999998875
Q ss_pred CCeeeeeeee
Q psy9001 861 VGHAYEQRIW 870 (1351)
Q Consensus 861 ~~~~~d~~~~ 870 (1351)
+..+++.+|
T Consensus 91 -~~~~~~~~~ 99 (99)
T cd02854 91 -TALYDGVFW 99 (99)
T ss_pred -CcceeeEEC
Confidence 346776554
|
Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi |
| >PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-12 Score=175.22 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=79.8
Q ss_pred CceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCC
Q psy9001 178 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 257 (1351)
Q Consensus 178 ~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~ 257 (1351)
+..+|-++... .++|.+++++ ||||++||||+ |||+|||+ . ..+|
T Consensus 743 P~atyrlq~~~------~~tf~~~~~~-l~Yl~~LGv~~----i~lsPi~~--------------------a---~~gs- 787 (1693)
T PRK14507 743 PRATYRLQFHK------DFTFADAEAI-LPYLAALGISH----VYASPILK--------------------A---RPGS- 787 (1693)
T ss_pred cceeEEEEeCC------CCCHHHHHHH-hHHHHHcCCCE----EEECCCcC--------------------C---CCCC-
Confidence 56688887643 4799999998 99999999999 99999664 1 1222
Q ss_pred CccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9001 258 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 337 (1351)
Q Consensus 258 ~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VI 337 (1351)
+|||+++||+ +++ |.+|+.++|++||++||++||+||
T Consensus 788 ---~hGYdv~D~~---------------------~id-------------------p~lG~~edf~~Lv~~ah~~Gi~vi 824 (1693)
T PRK14507 788 ---THGYDIVDHS---------------------QIN-------------------PEIGGEEGFERFCAALKAHGLGQL 824 (1693)
T ss_pred ---CCCCCCCCCC---------------------ccC-------------------cccCCHHHHHHHHHHHHHCCCEEE
Confidence 4999999999 777 999999999999999999999999
Q ss_pred EEeeccccccC
Q psy9001 338 LDVVHSHASKN 348 (1351)
Q Consensus 338 LDvV~NH~~~~ 348 (1351)
||+|+||++.+
T Consensus 825 lDiV~NH~~~~ 835 (1693)
T PRK14507 825 LDIVPNHMGVG 835 (1693)
T ss_pred EEecccccCCC
Confidence 99999999953
|
|
| >PRK14511 maltooligosyl trehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-12 Score=165.99 Aligned_cols=83 Identities=19% Similarity=0.271 Sum_probs=73.0
Q ss_pred CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccch
Q psy9001 195 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 274 (1351)
Q Consensus 195 ~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~ 274 (1351)
-++|++++++ ||||++||||+ |||+|||+ . ..+| +|||++.||+
T Consensus 16 ~~tf~~~~~~-l~YL~~LGis~----IyLsPi~~--------------------a---~~gs----~hGYdv~D~~---- 59 (879)
T PRK14511 16 GFTFDDAAEL-VPYFADLGVSH----LYLSPILA--------------------A---RPGS----THGYDVVDHT---- 59 (879)
T ss_pred CCCHHHHHHH-hHHHHHcCCCE----EEECcCcc--------------------C---CCCC----CCCCCcCCCC----
Confidence 3699999988 99999999999 99999664 1 1222 4999999999
Q ss_pred hhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCC
Q psy9001 275 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV 349 (1351)
Q Consensus 275 e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~ 349 (1351)
+++ |.+|+.++|++||++||++||+||||+|+||++.++
T Consensus 60 -----------------~id-------------------p~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~~~~ 98 (879)
T PRK14511 60 -----------------RIN-------------------PELGGEEGLRRLAAALRAHGMGLILDIVPNHMAVGG 98 (879)
T ss_pred -----------------CcC-------------------CCCCCHHHHHHHHHHHHHCCCEEEEEeccccccCcC
Confidence 666 999999999999999999999999999999999865
|
|
| >cd02860 Pullulanase_N_term Pullulanase domain N-terminus | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.4e-12 Score=124.24 Aligned_cols=97 Identities=22% Similarity=0.255 Sum_probs=75.1
Q ss_pred ccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcccccccccc
Q psy9001 697 YGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKLL 776 (1351)
Q Consensus 697 ~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (1351)
+|+++.+++ ++|++|||.|++|.|.+|++++.
T Consensus 1 lGa~~~~~~-~~F~vwAP~A~~V~L~l~~~~~~----------------------------------------------- 32 (100)
T cd02860 1 LGAVYTPEK-TTFRLWAPTAQSVKLLLYDKDDQ----------------------------------------------- 32 (100)
T ss_pred CCCEEeCCC-EEEEEECCCCcEEEEEEEcCCCC-----------------------------------------------
Confidence 589988755 99999999999999999643100
Q ss_pred cCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEEE
Q psy9001 777 ERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYV 855 (1351)
Q Consensus 777 ~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v 855 (1351)
.. ...+++|.+ +.|+| +++++++.+| ..|+|+|...++ ...+.+||||+++
T Consensus 33 -~~---~~~~~~m~~~~~gvw--------------~~~v~~~~~g-------~~Y~y~i~~~~~---~~~~~~DPyA~~~ 84 (100)
T cd02860 33 -DK---VLETVQMKRGENGVW--------------SVTLDGDLEG-------YYYLYEVKVYKG---ETNEVVDPYAKAL 84 (100)
T ss_pred -CC---cceeEeeecCCCCEE--------------EEEeCCccCC-------cEEEEEEEEece---EEEEEcCcccEeE
Confidence 00 012467865 68999 8888877666 567999987655 5779999999999
Q ss_pred ecCCCCCeeeeeee
Q psy9001 856 TEPPVVGHAYEQRI 869 (1351)
Q Consensus 856 ~~~~~~~~~~d~~~ 869 (1351)
+.|+++|+|+|...
T Consensus 85 ~~~~~~s~i~d~~~ 98 (100)
T cd02860 85 SANGERSVDLDDKK 98 (100)
T ss_pred eeCCCceEECChHH
Confidence 99999999999844
|
Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >KOG2212|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=138.64 Aligned_cols=106 Identities=21% Similarity=0.340 Sum_probs=80.1
Q ss_pred cccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcc-------------ccCcCCCCCCCcc--ccCC-C---C
Q psy9001 1022 ECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL-------------DGLNEFDGTQACF--FHDG-P---R 1082 (1351)
Q Consensus 1022 y~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~-------------~~l~~~dg~~~~y--f~~~-~---~ 1082 (1351)
-|.++.|-|..+||..||+.|.+-|.|+++|+|+||++.... .+..+|.|.+..- |+.. + .
T Consensus 84 SYKL~tRSGNE~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~ 163 (504)
T KOG2212|consen 84 SYKLCTRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGS 163 (504)
T ss_pred eEEeeccCCCHHHHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCc
Confidence 478888999999999999999999999999999999985321 1223444443211 2221 1 1
Q ss_pred CCCCCCCC------------CCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccc
Q psy9001 1083 GTHPLWDS------------RLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1083 g~~~~w~~------------~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m 1128 (1351)
....+|.. .|||..+.-||..|++-|.+.++ +||-|||.|+++||
T Consensus 164 ~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLid-lGVAGFRvDAsKHM 220 (504)
T KOG2212|consen 164 GDIENYNDATQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLID-IGVAGFRVDASKHM 220 (504)
T ss_pred cccccccchhhhhcceEeecchhhhcchHHHHHHHHHHHHHHH-hccceeeechhhcc
Confidence 22334421 28999999999999999999998 59999999999999
|
|
| >PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-12 Score=122.33 Aligned_cols=88 Identities=36% Similarity=0.663 Sum_probs=72.6
Q ss_pred ceEeecCCCcEEEEEeCc-----eEEEEeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEccCC
Q psy9001 522 YVSTKHEGDKVIIFERAG-----LLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSD 596 (1351)
Q Consensus 522 ~~~~~~~~~~Vlaf~R~~-----ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vlnsD 596 (1351)
|+...+++++|+||.|.. +|||+||+++..+.+|+ +++|.+|+|+++||||
T Consensus 1 Wi~~~d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~------------------------~~~p~~g~y~~vlnsd 56 (95)
T PF02806_consen 1 WIDHDDNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYR------------------------IGVPEAGRYKEVLNSD 56 (95)
T ss_dssp EEEEEEESSSEEEEEETTTETTEEEEEEESSSS-EEEEEE------------------------ECSSSSEEEEETTTTT
T ss_pred CcccccCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEE------------------------eCCCCcceeeEEeCCC
Confidence 345567789999999963 99999999986677777 9999999999999999
Q ss_pred CCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEE
Q psy9001 597 CSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTT 640 (1351)
Q Consensus 597 ~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~ 640 (1351)
+..|||++..+.. .++ .+++|+ ++|+|||++++||+.
T Consensus 57 ~~~~~g~~~~~~~-~v~---~~~~g~---~~~~lp~~s~~vl~~ 93 (95)
T PF02806_consen 57 DEEYGGSGKGNSG-EVT---VDSNGR---ITVTLPPYSALVLKL 93 (95)
T ss_dssp CEEEEESSCSETS-EEE---EETTSE---EEEEESTTEEEEEEE
T ss_pred ccEECCcccccCc-eEE---EeeCCE---EEEEECCCEEEEEEE
Confidence 9999999875443 233 456665 999999999999986
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A .... |
| >smart00642 Aamy Alpha-amylase domain | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-12 Score=136.60 Aligned_cols=47 Identities=40% Similarity=0.530 Sum_probs=45.3
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccC
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 1060 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~ 1060 (1351)
.++|| ++||+.++|+|||++||++||++||++||+||||+|+||++.
T Consensus 50 ~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 50 SYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred CCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 56889 899999999999999999999999999999999999999998
|
|
| >PF14872 GHL5: Hypothetical glycoside hydrolase 5 | Back alignment and domain information |
|---|
Probab=99.21 E-value=7e-10 Score=132.77 Aligned_cols=296 Identities=20% Similarity=0.224 Sum_probs=161.7
Q ss_pred CCCCeEEEEEecCCceeeEEEecCcceEEEecC-CCCCeeeeeeeeCCCCCCCCccc-------cCC-CCCCCCceEEEe
Q psy9001 826 YLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEP-PVVGHAYEQRIWNPKPQDKHKWT-------SSK-PKKPENLKIYES 896 (1351)
Q Consensus 826 ~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~~-~~~~~~~d~~~~~p~~~~~~~w~-------~~~-p~~p~d~iIYE~ 896 (1351)
-|+.|-.+-...+| ++.-..||-|-++--. -.-.-+||...-.+...+.-=|+ .+. |..|....|.++
T Consensus 108 ~GsfYwLry~d~~~---~~~~I~DpLaySlPyGvfaPAElYDl~~lq~~RaD~~Yf~~~~a~~~~~~~~rv~~P~nILQi 184 (811)
T PF14872_consen 108 AGSFYWLRYRDQDG---EVQIIRDPLAYSLPYGVFAPAELYDLERLQRRRADLDYFEATGAADPSDGIPRVPAPRNILQI 184 (811)
T ss_pred ccceEEEEEccCCC---CeEEecccccccCcccccChHHhhchHhHhhhhhhHHHHHhhccccCCCCCcccCCCceeEEE
Confidence 45777777766667 6777789988776421 00123455533222111100011 112 335678889999
Q ss_pred ecCCcccCCCcccccccccccccce-eccCCCccccccccccccc-----CCceEEEecCCCCCCCCcccccC-ccceec
Q psy9001 897 HVGICTQEQKCASYEDFVRVVIPRI-VKQGDFNNWNREEFAYKKL-----DFGKWELVLPPNPDGDFNNWNRE-EFAYKK 969 (1351)
Q Consensus 897 HV~~~s~~~~~gty~~f~~~~lp~i-k~lG~fn~~~~~~~~l~~l-----g~giwel~ip~~~~g~~Y~~~~~-~~~y~~ 969 (1351)
||+..|++ ||..++++.- .+| .++. + ..+|... |-..+||+- +.+--.|.=..+ ++.+
T Consensus 185 Hv~TAsp~---GtlaGLT~iy-qria~K~~--~-----g~pLtp~E~ny~GYDAvQLLP--iEPtieyr~e~~~~h~F-- 249 (811)
T PF14872_consen 185 HVGTASPE---GTLAGLTRIY-QRIADKLA--A-----GEPLTPAEENYVGYDAVQLLP--IEPTIEYRAENEPGHEF-- 249 (811)
T ss_pred ecCCCCCC---cchHHHHHHH-HHHHHHHh--c-----CCCCChhHHhcccccceeeec--cCCcceeccccCCCCce--
Confidence 99999988 7777766532 111 1111 0 1122221 223466662 222223331111 1111
Q ss_pred CCccceee---ecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc---ccccccccCC---CCCHHHHHHHHH
Q psy9001 970 LDFGKWEL---VLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY---LVDECHKAGL---FGTPEQLKYLVD 1040 (1351)
Q Consensus 970 ~d~gy~~~---~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY---~~Dy~~idp~---yGt~edfK~LV~ 1040 (1351)
|....+ .+.+.+. +|.....+...-..| .-.++|| +.-.-+.+|. -++|+||-.||.
T Consensus 250 --f~~~~~d~~~~~~~~~---~~~~~~~v~v~L~kP---------dtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfia 315 (811)
T PF14872_consen 250 --FSIRPEDEDELDPETE---GVHEDGDVTVTLRKP---------DTQNWGYDVVILGSAATNPALLETLRPDELVDFIA 315 (811)
T ss_pred --eeeccccccccccccc---ccccCceEEEEecCC---------CccccCcceeeeccCCCCHHHHhcCCcHHHHHHHH
Confidence 111110 0111111 111111111100111 1235666 3444556664 377999999999
Q ss_pred HHHH---cCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCC
Q psy9001 1041 ECHK---AGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQF 1117 (1351)
Q Consensus 1041 ~aH~---~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygV 1117 (1351)
+||. ..|+||+|+||.|+-+....-++. .|+ .++ |--+.++|+.+|.||..|++.-|-=++ +|+
T Consensus 316 tLHnFp~gPIqvIyDlVyGHADNQ~~~LLn~------~fl-kGP-----nMYGQdlnhq~P~VRAILLEmQRRK~n-~Ga 382 (811)
T PF14872_consen 316 TLHNFPTGPIQVIYDLVYGHADNQALDLLNR------RFL-KGP-----NMYGQDLNHQNPVVRAILLEMQRRKIN-TGA 382 (811)
T ss_pred HHhcCCCCCeEEEEeeecccccchhhHhhhh------hhc-cCC-----ccccccccccChHHHHHHHHHHHhhcc-cCC
Confidence 9995 679999999999998876444432 222 222 112457999999999999998887776 699
Q ss_pred CeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCC---eEEEEccC
Q psy9001 1118 DGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE---IITIAEDV 1180 (1351)
Q Consensus 1118 DGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd---~ilIaE~~ 1180 (1351)
||.|+|++.-..+.+.- + +. -...-.||.++.+.+.++.+. .++|=|+-
T Consensus 383 DGIRVDGgQDFk~fnpl-----t--------~~-ve~DD~YL~~M~dvvQ~I~~~~r~~f~IfEDG 434 (811)
T PF14872_consen 383 DGIRVDGGQDFKFFNPL-----T--------GR-VEYDDAYLLAMSDVVQEIGGARRLPFTIFEDG 434 (811)
T ss_pred ceeEecccccceeeccc-----c--------cc-cccchHHHHHHHHHHhhccccceeEEEEecCC
Confidence 99999999755321110 0 00 112446788888888887653 56788873
|
|
| >PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-10 Score=106.33 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=59.3
Q ss_pred cccceeecC-CcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcccccccc
Q psy9001 696 KYGIHVQAD-NSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHK 774 (1351)
Q Consensus 696 ~~G~~~~~~-~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1351)
.+|+++.++ ++++||+|||+|++|+|+++.+. .+
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~--------------~~------------------------------- 35 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNG--------------SW------------------------------- 35 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTT--------------SS-------------------------------
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeee--------------cC-------------------------------
Confidence 489999987 77999999999999999995320 00
Q ss_pred cccCCCCCCccccccc-c-ccccEEeeecccccCCCCceeeecCCccccccCCCC-CCeEEEEEecCCceeeEEEecCcc
Q psy9001 775 LLERDPYLNPYQYEMK-R-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYL-NPYQYEMKRRYGLMVNFLEQLSPW 851 (1351)
Q Consensus 775 ~~~~~~~~~~~~~~m~-~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~dPy 851 (1351)
...+++|+ + +.|+| +++|+++.+ +| ..|+|+|...+| +..+++|||
T Consensus 36 --------~~~~~~m~~~~~~G~w--------------~~~~~~~~~------~g~~~Y~y~i~~~~g---~~~~~~DPY 84 (85)
T PF02922_consen 36 --------PAEEYPMTRKDDDGVW--------------EVTVPGDLP------PGGYYYKYRIDGDDG---ETPEVVDPY 84 (85)
T ss_dssp --------EEEEEEEEEECTTTEE--------------EEEEEGCGT------TTT-EEEEEEEETTT---EEEEET-TT
T ss_pred --------CCceEEeeecCCCCEE--------------EEEEcCCcC------CCCEEEEEEEEeCCC---cEEEEeCCC
Confidence 12457786 3 59999 777876444 23 368999998887 789999999
Q ss_pred e
Q psy9001 852 A 852 (1351)
Q Consensus 852 a 852 (1351)
|
T Consensus 85 A 85 (85)
T PF02922_consen 85 A 85 (85)
T ss_dssp -
T ss_pred C
Confidence 8
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A .... |
| >KOG2212|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.5e-10 Score=123.16 Aligned_cols=150 Identities=17% Similarity=0.250 Sum_probs=106.3
Q ss_pred CHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCcccc--Ccccccccccch
Q psy9001 197 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALV--GDKTIAFWLMDK 274 (1351)
Q Consensus 197 ~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~w--GY~~~~y~~~~~ 274 (1351)
++.+|+.++-..|.--|+.. ||+.| ++|+ ....+. ..-| -|+|++|-
T Consensus 38 KW~DiA~ECE~FL~p~G~~g----VQVSP--------------------~nEn--~~~~~~-~rPWWeRYQPvSYK---- 86 (504)
T KOG2212|consen 38 KWVDIALECERFLAPKGFGG----VQVSP--------------------PNEN--VAIHNP-FRPWWERYQPVSYK---- 86 (504)
T ss_pred ehHHHHHHHHhhcCcCCcce----eeecC--------------------cchh--hhhcCC-CCCceeecccceEE----
Confidence 68889988888999999999 99999 4443 111110 0113 26666555
Q ss_pred hhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcC---
Q psy9001 275 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD--- 351 (1351)
Q Consensus 275 e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~--- 351 (1351)
++.|-|..+||+.||.+|.+-|+++++|+|+||++.....
T Consensus 87 -------------------------------------L~tRSGNE~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~ 129 (504)
T KOG2212|consen 87 -------------------------------------LCTRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGT 129 (504)
T ss_pred -------------------------------------eeccCCCHHHHHHHHHHhhccceEEEehhhhhhhccccccCCc
Confidence 3378899999999999999999999999999999842111
Q ss_pred ----CcccCCCCCC----cC----cccCC----CCCCCCCCC------------ccCCCCCHHHHHHHHHHHHHHHHHcC
Q psy9001 352 ----GLNEFDGTQA----CF----FHDGP----RGTHPLWDS------------RLFNYSEIEVLRFLLSNLRWYLDEYQ 403 (1351)
Q Consensus 352 ----~~~~f~g~~~----~y----y~~~~----~~~~~~w~~------------~~ln~~~p~v~~~l~~~l~~W~~e~~ 403 (1351)
|...+++..+ +| |+... .....+|.. .+||-++.-||..|++-|.+.++ .|
T Consensus 130 vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLid-lG 208 (504)
T KOG2212|consen 130 VGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLID-IG 208 (504)
T ss_pred cccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccchhhhhcceEeecchhhhcchHHHHHHHHHHHHHHH-hc
Confidence 1122233221 12 22211 122334432 47888999999999999999999 89
Q ss_pred CCcccccccccc
Q psy9001 404 FDGFRFDGVTSM 415 (1351)
Q Consensus 404 vDGfR~D~a~~~ 415 (1351)
|-|||+|++.+|
T Consensus 209 VAGFRvDAsKHM 220 (504)
T KOG2212|consen 209 VAGFRVDASKHM 220 (504)
T ss_pred cceeeechhhcc
Confidence 999999999999
|
|
| >cd02860 Pullulanase_N_term Pullulanase domain N-terminus | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.2e-10 Score=107.95 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=69.5
Q ss_pred cccCceeEEE-----EEEEEEEeecCCCCc----cccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceee
Q psy9001 64 ECHKAGLLCF-----MHVVCAAGDFNNWNR----EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLD 134 (1351)
Q Consensus 64 ~~~~~gv~F~-----A~~V~LvGDFN~Wd~----~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~ 134 (1351)
.....|++|+ |++|+|+. |++|+. ..++|.+.++|+|+++|++..+| ..|+|+|++.++....
T Consensus 4 ~~~~~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g-------~~Y~y~i~~~~~~~~~ 75 (100)
T cd02860 4 VYTPEKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLEG-------YYYLYEVKVYKGETNE 75 (100)
T ss_pred EEeCCCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccCC-------cEEEEEEEEeceEEEE
Confidence 3345789999 99999987 888861 45899998899999999987655 6999999987677778
Q ss_pred ccCCcceEEecCCCCcccee
Q psy9001 135 RLSPWATYVTEPPVVGHAYE 154 (1351)
Q Consensus 135 ~~DPyA~~~~~~~~~~~~~~ 154 (1351)
++||||++++.+...|+++|
T Consensus 76 ~~DPyA~~~~~~~~~s~i~d 95 (100)
T cd02860 76 VVDPYAKALSANGERSVDLD 95 (100)
T ss_pred EcCcccEeEeeCCCceEECC
Confidence 99999999999998777765
|
Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >TIGR01531 glyc_debranch glycogen debranching enzymye | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-10 Score=146.81 Aligned_cols=85 Identities=13% Similarity=0.131 Sum_probs=68.5
Q ss_pred CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccch
Q psy9001 195 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 274 (1351)
Q Consensus 195 ~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~ 274 (1351)
.|+|.++.++ |++||+||+|+ |||+|||+ . . .| +..|++.||+
T Consensus 128 mG~~~~w~~~-L~~ik~lGyN~----IhftPI~~--------------------~--G--~S----nS~Ysi~Dyl---- 170 (1464)
T TIGR01531 128 LGPLSEWEPR-LRVAKEKGYNM----IHFTPLQE--------------------L--G--GS----NSCYSLYDQL---- 170 (1464)
T ss_pred cCCHHHHHHH-HHHHHHcCCCE----EEeCCCcc--------------------C--C--CC----CCCccccchh----
Confidence 6999988877 99999999999 99999553 2 1 11 2355555555
Q ss_pred hhhcccccCCCCchhcccccccCCCCccccccccccccCCCC----CCHHHHHHHHHHHHHc-CCEEEEEeeccccccCC
Q psy9001 275 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLF----GTPEQLKYLVDECHKA-GLYVLLDVVHSHASKNV 349 (1351)
Q Consensus 275 e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~----G~~~efk~LV~~~H~~-GI~VILDvV~NH~~~~~ 349 (1351)
+|||.+ |+.++|++||+++|++ ||+||+|+|+|||+.++
T Consensus 171 ------------------------------------~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~NHTa~ds 214 (1464)
T TIGR01531 171 ------------------------------------QLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVFNHTANNS 214 (1464)
T ss_pred ------------------------------------hcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeeecccccCC
Confidence 455777 5899999999999997 99999999999999998
Q ss_pred cCC
Q psy9001 350 LDG 352 (1351)
Q Consensus 350 ~~~ 352 (1351)
.|.
T Consensus 215 ~Wl 217 (1464)
T TIGR01531 215 PWL 217 (1464)
T ss_pred HHH
Confidence 654
|
glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground. |
| >COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.6e-10 Score=135.14 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=70.6
Q ss_pred CHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhh
Q psy9001 197 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEM 276 (1351)
Q Consensus 197 ~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~ 276 (1351)
+|.+..+- ||||++|||.| +++.|||. +..|| .||||++|.-
T Consensus 17 tF~~A~~~-l~yl~~LGISh----LY~SPIft-----------------------A~pGS----tHGYDVvD~t------ 58 (889)
T COG3280 17 TFADARAL-LDYLADLGISH----LYLSPIFT-----------------------ARPGS----THGYDVVDPT------ 58 (889)
T ss_pred CHHHHHHh-hHHHHhcCchh----eeccchhh-----------------------cCCCC----CCCccCCCcc------
Confidence 77776654 99999999999 99999885 34455 3999998888
Q ss_pred hcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccC
Q psy9001 277 YTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 348 (1351)
Q Consensus 277 ~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~ 348 (1351)
.++ |.+|+.+.|..||.++|++||++|+|+|+||++-.
T Consensus 59 ---------------~In-------------------PeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 59 ---------------EIN-------------------PELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred ---------------ccC-------------------hhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 666 99999999999999999999999999999999976
|
|
| >cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-09 Score=103.88 Aligned_cols=88 Identities=14% Similarity=0.217 Sum_probs=62.4
Q ss_pred ccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcccccccccc
Q psy9001 697 YGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKLL 776 (1351)
Q Consensus 697 ~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (1351)
+|+.+++++ ++|++|||.|++|.|++|+++
T Consensus 2 lGa~~~~~g-~~F~vwAP~A~~V~L~l~~~~------------------------------------------------- 31 (103)
T cd02856 2 LGATLDGEG-CNFAVHSENATRIELCLFDED------------------------------------------------- 31 (103)
T ss_pred CccEEeCCC-eEEEEECCCCCEEEEEEEeCC-------------------------------------------------
Confidence 799988555 999999999999999995320
Q ss_pred cCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEec----CCc-eeeEEEecCc
Q psy9001 777 ERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRR----YGL-MVNFLEQLSP 850 (1351)
Q Consensus 777 ~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~----~~~-~~~~~~~~dP 850 (1351)
+ ....++|++ +.|+| ++++++...| ..|+|+|... .|. .....+.+||
T Consensus 32 --~---~~~~~~m~~~~~GvW--------------~~~v~~~~~g-------~~Y~y~i~g~~~p~~~~~~~~~~~~~DP 85 (103)
T cd02856 32 --G---SETRLPLTEEYGGVW--------------HGFLPGIKAG-------QRYGFRVHGPYDPERGLRFNPAKLLLDP 85 (103)
T ss_pred --C---CEEEEEcccccCCEE--------------EEEECCCCCC-------CEEEEEECCccCcccCcccCCCeEEecC
Confidence 0 012356765 48999 8888876665 5679999651 010 0134789999
Q ss_pred ceEEEecCCC
Q psy9001 851 WATYVTEPPV 860 (1351)
Q Consensus 851 ya~~v~~~~~ 860 (1351)
|||+++.+..
T Consensus 86 YA~~~~~~~~ 95 (103)
T cd02856 86 YARALDGPLA 95 (103)
T ss_pred CcceEcCCcc
Confidence 9999987554
|
Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.2e-09 Score=100.39 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=61.3
Q ss_pred cceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccccccc
Q psy9001 698 GIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKLLE 777 (1351)
Q Consensus 698 G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1351)
|+.++++++++|++|||.|++|.|.++..
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~~~--------------------------------------------------- 29 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLDDG--------------------------------------------------- 29 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEecCC---------------------------------------------------
Confidence 67787766799999999999999998210
Q ss_pred CCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEE--
Q psy9001 778 RDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATY-- 854 (1351)
Q Consensus 778 ~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~-- 854 (1351)
..++|.+ +.|+| +++++++ .| ..|+|+|. ++ .+++||||++
T Consensus 30 -------~~~~m~~~~~G~W--------------~~~v~~~-~g-------~~Y~y~v~--~~-----~~~~DP~a~~~~ 73 (85)
T cd02853 30 -------EEIPMQRDGDGWF--------------EAEVPGA-AG-------TRYRYRLD--DG-----TPVPDPASRFQP 73 (85)
T ss_pred -------CcccCccCCCcEE--------------EEEeCCC-CC-------CeEEEEEC--CC-----cCCCCCccccCC
Confidence 1245754 58999 8888877 66 45689885 33 5889999999
Q ss_pred EecCCCCCeeee
Q psy9001 855 VTEPPVVGHAYE 866 (1351)
Q Consensus 855 v~~~~~~~~~~d 866 (1351)
+++++. |+++|
T Consensus 74 ~~~~~~-s~v~~ 84 (85)
T cd02853 74 EGVHGP-SQVVD 84 (85)
T ss_pred CCCCCC-eEeeC
Confidence 456763 77776
|
MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.6e-09 Score=98.85 Aligned_cols=67 Identities=25% Similarity=0.393 Sum_probs=56.6
Q ss_pred ceeEEE-----EEEEEEEeecCC-CCcccccee-ecCCCeEEEEcCCCCCCCcccCcc-cEEEEEEEecCCceeeccCCc
Q psy9001 68 AGLLCF-----MHVVCAAGDFNN-WNREEFAYK-KLDFGKWELVLPPNPDGSCKLTHL-SQVKLVVRNQHGHLLDRLSPW 139 (1351)
Q Consensus 68 ~gv~F~-----A~~V~LvGDFN~-Wd~~~~~M~-k~~~GvW~~~ip~~~~G~~~~~~g-~~Y~y~i~~~~g~~~~~~DPy 139 (1351)
++++|+ |++|+|+++|++ |....++|+ +.+.|+|+++||+.. .+| .+|+|+|++.+|+...++|||
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~------~~g~~~Y~y~i~~~~g~~~~~~DPY 84 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDL------PPGGYYYKYRIDGDDGETPEVVDPY 84 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCG------TTTT-EEEEEEEETTTEEEEET-TT
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCc------CCCCEEEEEEEEeCCCcEEEEeCCC
Confidence 599999 999999999999 888889999 588999999999532 234 499999998888888999999
Q ss_pred c
Q psy9001 140 A 140 (1351)
Q Consensus 140 A 140 (1351)
|
T Consensus 85 A 85 (85)
T PF02922_consen 85 A 85 (85)
T ss_dssp -
T ss_pred C
Confidence 8
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A .... |
| >PRK14511 maltooligosyl trehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-09 Score=138.84 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=46.8
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCc
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV 1062 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~ 1062 (1351)
++||| ++||+.|||+||+.++|++||++||++||+||||+|+||++.++
T Consensus 49 s~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~~~~ 98 (879)
T PRK14511 49 STHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMAVGG 98 (879)
T ss_pred CCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccCcC
Confidence 57999 99999999999999999999999999999999999999999864
|
|
| >cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-08 Score=98.43 Aligned_cols=94 Identities=28% Similarity=0.443 Sum_probs=68.0
Q ss_pred HhhhccccceeecC---CcEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCCC
Q psy9001 691 TTSYNKYGIHVQAD---NSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPAS 766 (1351)
Q Consensus 691 ~~~y~~~G~~~~~~---~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1351)
...|..+|+|+.++ ++++||+|||.|++|.|+++ |+|+
T Consensus 4 ~~p~~~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~~~~~-------------------------------------- 45 (106)
T cd02855 4 ERLYEKLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDFNGWD-------------------------------------- 45 (106)
T ss_pred hhHHHhcCCEEcccCCcCCEEEEEECCCCCEEEEEEECCCCC--------------------------------------
Confidence 45788999998874 66999999999999999982 3310
Q ss_pred cccccccccccCCCCCCcccccccc-c-cccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeE
Q psy9001 767 IHIPELHKLLERDPYLNPYQYEMKR-R-YGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNF 844 (1351)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~m~~-~-~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 844 (1351)
....+|++ + .|+| ++.++....+ ..|+|++...+| .+
T Consensus 46 -----------------~~~~~m~~~~~~G~w--------------~~~v~~~~~~-------~~Y~~~v~~~~g---~~ 84 (106)
T cd02855 46 -----------------GRRHPMRRRGDSGVW--------------ELFIPGLGEG-------ELYKYEILGADG---HL 84 (106)
T ss_pred -----------------CcceecEECCCCCEE--------------EEEECCCCCC-------CEEEEEEECCCC---CE
Confidence 01235644 4 8999 7777754333 457899876555 46
Q ss_pred EEecCcceEEEecCCCCCe
Q psy9001 845 LEQLSPWATYVTEPPVVGH 863 (1351)
Q Consensus 845 ~~~~dPya~~v~~~~~~~~ 863 (1351)
.++.||||++++++.....
T Consensus 85 ~~~~DPYa~~~~~~~~~~~ 103 (106)
T cd02855 85 PLKADPYAFYSELRPGTAS 103 (106)
T ss_pred EEeeCCCceeeEeCCCCeE
Confidence 7899999999998765433
|
Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina |
| >cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-08 Score=99.62 Aligned_cols=74 Identities=28% Similarity=0.528 Sum_probs=63.6
Q ss_pred ceeEEE-----EEEEEEEeecCCCCccccceeecC-CCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcce
Q psy9001 68 AGLLCF-----MHVVCAAGDFNNWNREEFAYKKLD-FGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWAT 141 (1351)
Q Consensus 68 ~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~-~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~ 141 (1351)
++++|+ |++|+|+++||+|+...++|++.+ .|+|++++|+...| ..|+|++...+|....+.||||+
T Consensus 21 ~~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~~-------~~Y~~~v~~~~g~~~~~~DPYa~ 93 (106)
T cd02855 21 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGEG-------ELYKYEILGADGHLPLKADPYAF 93 (106)
T ss_pred CCEEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCCCC-------CEEEEEEECCCCCEEEeeCCCce
Confidence 789999 999999999999977678999866 99999999876544 58999999755666789999999
Q ss_pred EEecCCC
Q psy9001 142 YVTEPPV 148 (1351)
Q Consensus 142 ~~~~~~~ 148 (1351)
.+...+.
T Consensus 94 ~~~~~~~ 100 (106)
T cd02855 94 YSELRPG 100 (106)
T ss_pred eeEeCCC
Confidence 9998765
|
Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina |
| >cd02852 Isoamylase_N_term Isoamylase N-terminus domain | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-08 Score=102.80 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=61.9
Q ss_pred cceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccccccc
Q psy9001 698 GIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKLLE 777 (1351)
Q Consensus 698 G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1351)
|+++++++ ++|++|||+|++|.|++|++++.
T Consensus 1 Ga~~~~~g-~~F~vwAP~A~~V~L~lf~~~~~------------------------------------------------ 31 (119)
T cd02852 1 GATIDAGG-VNFSVYSSNATAVELLLFDPGDG------------------------------------------------ 31 (119)
T ss_pred CCeEeCCC-EEEEEECCCCCEEEEEEEeCCCC------------------------------------------------
Confidence 77888765 99999999999999999643100
Q ss_pred CCCCCCcccccccc-c---cccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEe----cCCceeeEEE---
Q psy9001 778 RDPYLNPYQYEMKR-R---YGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKR----RYGLMVNFLE--- 846 (1351)
Q Consensus 778 ~~~~~~~~~~~m~~-~---~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~----~~~~~~~~~~--- 846 (1351)
.. ...+++|.+ + .|+| +++|++...| ..|.|+|.. ..| ...+
T Consensus 32 ~~---~~~~~~m~~~~~~~~gvW--------------~~~v~~~~~g-------~~Y~y~v~g~~~p~~g---~~~~~~~ 84 (119)
T cd02852 32 DE---PALEIELDPSVNRTGDVW--------------HVFVEGLKPG-------QLYGYRVDGPFEPEQG---HRFDPSK 84 (119)
T ss_pred CC---ceEEEeCcCcccccCCEE--------------EEEECCCCCC-------CEEEEEECCCCCCCcc---cccCCCc
Confidence 00 012356743 2 5999 8888887666 567999973 234 3334
Q ss_pred -ecCcceEEEecCCCCC
Q psy9001 847 -QLSPWATYVTEPPVVG 862 (1351)
Q Consensus 847 -~~dPya~~v~~~~~~~ 862 (1351)
.+||||++++.+...+
T Consensus 85 ~~~DPYA~a~~~~~~~~ 101 (119)
T cd02852 85 VLLDPYAKAVSGDEYFG 101 (119)
T ss_pred EEECCCcCeEcCccccC
Confidence 8999999998766433
|
Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.4e-09 Score=140.58 Aligned_cols=47 Identities=26% Similarity=0.345 Sum_probs=45.5
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccC
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 1060 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~ 1060 (1351)
++||| ++||+.|||+||+.++|++||++||++||+||||+|+||++.
T Consensus 787 s~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~~ 834 (1693)
T PRK14507 787 STHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMGV 834 (1693)
T ss_pred CCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccCC
Confidence 57999 999999999999999999999999999999999999999995
|
|
| >COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=116.11 Aligned_cols=57 Identities=28% Similarity=0.387 Sum_probs=53.1
Q ss_pred CCCCCCCC-c-ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCC
Q psy9001 1005 HLLDRFGT-P-EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 1061 (1351)
Q Consensus 1005 ~~~~~~~s-p-~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~ 1061 (1351)
|.||+|.+ | +.||| ++|...|||.+|+.+.|.+||.++|++||.+|+|+|+||++..
T Consensus 37 Y~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 37 YLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred eccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 56788877 3 78999 9999999999999999999999999999999999999999876
|
|
| >cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.6e-08 Score=95.90 Aligned_cols=78 Identities=15% Similarity=0.121 Sum_probs=60.9
Q ss_pred cccccCceeEEE-----EEEEEEEeecCCCC-ccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEec-------
Q psy9001 62 VDECHKAGLLCF-----MHVVCAAGDFNNWN-REEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ------- 128 (1351)
Q Consensus 62 ~~~~~~~gv~F~-----A~~V~LvGDFN~Wd-~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~------- 128 (1351)
+....+.|++|+ |++|+|+. |+++. ...++|++.++|+|++.|++..+| .+|+|+|+++
T Consensus 3 Ga~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~g-------~~Y~y~i~g~~~p~~~~ 74 (103)
T cd02856 3 GATLDGEGCNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKAG-------QRYGFRVHGPYDPERGL 74 (103)
T ss_pred ccEEeCCCeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCCC-------CEEEEEECCccCcccCc
Confidence 334457789999 99999997 66664 456899888899999999987655 5999999872
Q ss_pred -CCceeeccCCcceEEecCC
Q psy9001 129 -HGHLLDRLSPWATYVTEPP 147 (1351)
Q Consensus 129 -~g~~~~~~DPyA~~~~~~~ 147 (1351)
.+...+++||||+.++.+.
T Consensus 75 ~~~~~~~~~DPYA~~~~~~~ 94 (103)
T cd02856 75 RFNPAKLLLDPYARALDGPL 94 (103)
T ss_pred ccCCCeEEecCCcceEcCCc
Confidence 1233679999999997654
|
Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >cd02852 Isoamylase_N_term Isoamylase N-terminus domain | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-07 Score=94.77 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=59.3
Q ss_pred cCceeEEE-----EEEEEEEeecCCCCc----cccceeecC---CCeEEEEcCCCCCCCcccCcccEEEEEEEe----cC
Q psy9001 66 HKAGLLCF-----MHVVCAAGDFNNWNR----EEFAYKKLD---FGKWELVLPPNPDGSCKLTHLSQVKLVVRN----QH 129 (1351)
Q Consensus 66 ~~~gv~F~-----A~~V~LvGDFN~Wd~----~~~~M~k~~---~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~----~~ 129 (1351)
.+.|++|+ |++|+|+. |++|+. ..++|++.+ +|+|+++|++...| .+|+|+|++ .+
T Consensus 5 ~~~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g-------~~Y~y~v~g~~~p~~ 76 (119)
T cd02852 5 DAGGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPG-------QLYGYRVDGPFEPEQ 76 (119)
T ss_pred eCCCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCC-------CEEEEEECCCCCCCc
Confidence 45799999 99999997 888752 246887644 79999999988765 599999996 35
Q ss_pred Cceee----ccCCcceEEecCCC
Q psy9001 130 GHLLD----RLSPWATYVTEPPV 148 (1351)
Q Consensus 130 g~~~~----~~DPyA~~~~~~~~ 148 (1351)
|.+.. ++||||+++..+..
T Consensus 77 g~~~~~~~~~~DPYA~a~~~~~~ 99 (119)
T cd02852 77 GHRFDPSKVLLDPYAKAVSGDEY 99 (119)
T ss_pred ccccCCCcEEECCCcCeEcCccc
Confidence 66554 89999999976653
|
Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >TIGR01531 glyc_debranch glycogen debranching enzymye | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-07 Score=124.16 Aligned_cols=50 Identities=22% Similarity=0.391 Sum_probs=46.3
Q ss_pred cccccc-ccccccccCCC----CCHHHHHHHHHHHHHc-CCEEEEEeecccccCCc
Q psy9001 1013 PEQLKY-LVDECHKAGLF----GTPEQLKYLVDECHKA-GLYVLLDVVHSHASKNV 1062 (1351)
Q Consensus 1013 p~~hgY-~~Dy~~idp~y----Gt~edfK~LV~~aH~~-GI~VILDVV~NHts~~~ 1062 (1351)
++.|.| +.||+.|||.| |+.+||++||++||++ ||+||+|+|+|||+.++
T Consensus 159 ~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~NHTa~ds 214 (1464)
T TIGR01531 159 GSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVFNHTANNS 214 (1464)
T ss_pred CCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeeecccccCC
Confidence 356788 99999999999 4899999999999997 99999999999999987
|
glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground. |
| >cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.3e-07 Score=84.37 Aligned_cols=70 Identities=17% Similarity=0.128 Sum_probs=54.8
Q ss_pred ceeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceE
Q psy9001 68 AGLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATY 142 (1351)
Q Consensus 68 ~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~ 142 (1351)
.+++|+ |++|.|+... + ..++|.+.+.|+|+++++++ +| ..|+|+|. ++ ..+.||||++
T Consensus 8 ~~~~F~vwAP~A~~V~l~l~~--~--~~~~m~~~~~G~W~~~v~~~-~g-------~~Y~y~v~--~~--~~~~DP~a~~ 71 (85)
T cd02853 8 GGTRFRLWAPDAKRVTLRLDD--G--EEIPMQRDGDGWFEAEVPGA-AG-------TRYRYRLD--DG--TPVPDPASRF 71 (85)
T ss_pred CCEEEEEeCCCCCEEEEEecC--C--CcccCccCCCcEEEEEeCCC-CC-------CeEEEEEC--CC--cCCCCCcccc
Confidence 789999 9999999632 3 35899988899999999988 76 49999998 23 4789999999
Q ss_pred EecCCC-Cccce
Q psy9001 143 VTEPPV-VGHAY 153 (1351)
Q Consensus 143 ~~~~~~-~~~~~ 153 (1351)
+..... +|+++
T Consensus 72 ~~~~~~~~s~v~ 83 (85)
T cd02853 72 QPEGVHGPSQVV 83 (85)
T ss_pred CCCCCCCCeEee
Confidence 754443 45444
|
MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >cd02858 Esterase_N_term Esterase N-terminal domain | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-06 Score=82.29 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.2
Q ss_pred ecCCcEEEEeecCCccEEEEEec
Q psy9001 702 QADNSVRCFEWAPSAQQLYLTGY 724 (1351)
Q Consensus 702 ~~~~~~~~~~WaP~A~~v~l~~~ 724 (1351)
.++++++|++|||.|++|.|+++
T Consensus 3 ~~~~~v~F~vwAP~A~~V~L~~~ 25 (85)
T cd02858 3 HADRTVTFRLFAPKANEVQVRGS 25 (85)
T ss_pred CCCCcEEEEEECCCCCEEEEEee
Confidence 35678999999999999999993
|
Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >cd02861 E_set_proteins_like E or "early" set-like proteins | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.1e-06 Score=80.71 Aligned_cols=66 Identities=26% Similarity=0.399 Sum_probs=52.4
Q ss_pred eeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEE
Q psy9001 69 GLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYV 143 (1351)
Q Consensus 69 gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~ 143 (1351)
.|+|+ |++|+|+|+||+|+ .++|++.++|+|+++++ +.+|. ..|||.|. |.+ .+.||.+...
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn~W~--~~~m~~~~~G~w~~~~~-l~~G~------y~Ykf~vd---g~~-~~~DP~~~~~ 69 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFNNWN--AIPMEREGDGLWVVTVE-LRPGR------YEYKFVVD---GEW-VIVDPNAAAY 69 (82)
T ss_pred cEEEEEECCCCCEEEEEeECCCCC--cccCEECCCCcEEEEEe-CCCCc------EEEEEEEC---CEE-eeCCCCCCce
Confidence 47888 89999999999997 57999988899999997 55553 47888875 543 3689999877
Q ss_pred ecCC
Q psy9001 144 TEPP 147 (1351)
Q Consensus 144 ~~~~ 147 (1351)
..++
T Consensus 70 ~~~~ 73 (82)
T cd02861 70 VDDG 73 (82)
T ss_pred ecCC
Confidence 5554
|
These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.24 E-value=1e-05 Score=94.64 Aligned_cols=138 Identities=19% Similarity=0.264 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCC-----CCCccCCCCCHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL-----WDSRLFNYSEIEVLRFLLS 393 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~-----w~~~~ln~~~p~v~~~l~~ 393 (1351)
-+-|+.||++||++||+|.-=+.++...... ......++.++.....+.... -+..-||-++|+||+||++
T Consensus 69 ~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~ 144 (311)
T PF02638_consen 69 FDPLEFMIEEAHKRGLEVHAWFRVGFNAPDV----SHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIID 144 (311)
T ss_pred ccHHHHHHHHHHHcCCEEEEEEEeecCCCch----hhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHH
Confidence 3679999999999999998766444332210 001111122221111111000 1123589999999999999
Q ss_pred HHHHHHHHcCCCccccccccccccccCCCCCCCCC--CccccCC-----CccC-------ch-HHHHHHHHHHHHHhhCC
Q psy9001 394 NLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSG--HYDEYFG-----LNVD-------TD-ALIYLMVANKFLHDKYP 458 (1351)
Q Consensus 394 ~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~--~~~~~~~-----~~~~-------~~-~~~f~~~~~~~v~~~~P 458 (1351)
.++--++.|.|||..||-. .|.....+..+.. .+..+.+ ...+ .+ --.|.+.+.++|++++|
T Consensus 145 ~v~Eiv~~YdvDGIhlDdy---~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP 221 (311)
T PF02638_consen 145 IVKEIVKNYDVDGIHLDDY---FYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKP 221 (311)
T ss_pred HHHHHHhcCCCCeEEeccc---ccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999932 1211111111100 0111111 0111 11 12588889999999999
Q ss_pred CeEEE
Q psy9001 459 EIITI 463 (1351)
Q Consensus 459 ~~~~i 463 (1351)
++.+=
T Consensus 222 ~v~~s 226 (311)
T PF02638_consen 222 WVKFS 226 (311)
T ss_pred CCeEE
Confidence 97663
|
|
| >PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.6e-06 Score=78.70 Aligned_cols=82 Identities=23% Similarity=0.274 Sum_probs=57.6
Q ss_pred HHHHHHHhhhcccccccCCcceEee---cCCCcEEEEEeC----ceEEEEeCCCCCcccccccccccCcccccccccccc
Q psy9001 502 FDAAMNTTEERFKWLSADPGYVSTK---HEGDKVIIFERA----GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGS 574 (1351)
Q Consensus 502 f~k~L~~Lr~~~~~L~~g~~~~~~~---~~~~~Vlaf~R~----~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1351)
|||+||+||+++|+|+.+.. ..+. ...+.++++.|. .++|++||++. .
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~-~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~------~------------------ 55 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDF-RFLEVERDAPDALLAFRRTGGGERLLVAFNLSDE------P------------------ 55 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEE-EEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS-------------------------
T ss_pred CHHHHHHHHhhCccccCCCc-ccEEEEecCCCEEEEEEEEcCCceEEEEEecCCC------c------------------
Confidence 79999999999999998832 2222 445678888884 79999999987 2
Q ss_pred cccceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEE
Q psy9001 575 ISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLIL 638 (1351)
Q Consensus 575 ~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl 638 (1351)
+.++.....+.++.|+...++| .++|||.+++|+
T Consensus 56 ------~~~~~~~~~~~l~~s~~~~~~~------------------------~~~L~p~~~~v~ 89 (89)
T PF11941_consen 56 ------VTVPEGPWGEVLFSSEPARAGG------------------------AGTLPPWSVVVL 89 (89)
T ss_dssp ------EEEETSCCEEEEEECSCSSE--------------------------EEEE-TTEEEEE
T ss_pred ------EEccCCCCCeEEEcCCCccccc------------------------CceECCCEEEEC
Confidence 4444445667777775544333 489999999886
|
It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A .... |
| >cd02858 Esterase_N_term Esterase N-terminal domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.8e-06 Score=77.13 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=51.4
Q ss_pred CceeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcce
Q psy9001 67 KAGLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWAT 141 (1351)
Q Consensus 67 ~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~ 141 (1351)
...|+|+ |++|+|+|+||+|. .++|++.++|+|+++++....| .|.|++. .+| ....||+++
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~~~~--~~~m~~~~~G~W~~~v~~l~~g--------~Y~Y~~~-vdg--~~~~DP~s~ 71 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWGGAG--SHPMTKDEAGVWSVTTGPLAPG--------IYTYSFL-VDG--VRVIDPSNP 71 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecCCCc--cEeCeECCCeEEEEEECCCCCc--------EEEEEEE-ECC--eEecCCCCC
Confidence 3579999 99999999999654 5899998899999999766554 5566665 245 467999998
Q ss_pred EEec
Q psy9001 142 YVTE 145 (1351)
Q Consensus 142 ~~~~ 145 (1351)
....
T Consensus 72 ~~~~ 75 (85)
T cd02858 72 TTKP 75 (85)
T ss_pred ceee
Confidence 7653
|
Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.8e-05 Score=93.02 Aligned_cols=90 Identities=24% Similarity=0.296 Sum_probs=66.5
Q ss_pred CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccch
Q psy9001 195 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 274 (1351)
Q Consensus 195 ~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~ 274 (1351)
.|.|.+..+. |+.++++|+|. |+++| +++. ...+| -|...|..
T Consensus 18 ~G~~~~W~~~-l~~~~~~GYNm----IHftP--------------------lq~~--G~S~S------~YSI~Dql---- 60 (423)
T PF14701_consen 18 MGPFSDWEKH-LKVISEKGYNM----IHFTP--------------------LQER--GESNS------PYSIYDQL---- 60 (423)
T ss_pred cCCHhHHHHH-HHHHHHcCCcE----EEecc--------------------cccC--CCCCC------Cccccchh----
Confidence 5889988877 99999999999 99999 5555 22233 57777766
Q ss_pred hhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHH-HcCCEEEEEeeccccccCCcC
Q psy9001 275 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH-KAGLYVLLDVVHSHASKNVLD 351 (1351)
Q Consensus 275 e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H-~~GI~VILDvV~NH~~~~~~~ 351 (1351)
..++.+-.+ ..-.+.+++++||++++ +.||.+|.|||+|||+.++.|
T Consensus 61 -----------------~~~~~~~~~-------------~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~NHtA~nS~W 108 (423)
T PF14701_consen 61 -----------------KFDPDFFPP-------------GKESTFEDVKEFVKEAEKKYGLLSMTDVVLNHTANNSPW 108 (423)
T ss_pred -----------------hcChhhcCC-------------CccccHHHHHHHHHHHHHHcCceEEEEEeeccCcCCChH
Confidence 222222111 11135689999999996 699999999999999998644
|
|
| >cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD) | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.4e-05 Score=72.15 Aligned_cols=60 Identities=28% Similarity=0.410 Sum_probs=46.6
Q ss_pred eeEEE----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceE
Q psy9001 69 GLLCF----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATY 142 (1351)
Q Consensus 69 gv~F~----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~ 142 (1351)
.|+|+ |++|+|+|+||+|+. .+||++.++| |++.++ +++|. ..|||.|. |+ ++.||-...
T Consensus 3 ~v~f~~~~~a~~V~v~G~F~~W~~-~~pm~~~~~~-~~~~~~-L~~g~------y~YkF~Vd---g~--w~~d~~~~~ 66 (79)
T cd02859 3 PTTFVWPGGGKEVYVTGSFDNWKK-KIPLEKSGKG-FSATLR-LPPGK------YQYKFIVD---GE--WRHSPDLPT 66 (79)
T ss_pred EEEEEEcCCCcEEEEEEEcCCCCc-cccceECCCC-cEEEEE-cCCCC------EEEEEEEC---CE--EEeCCCCCc
Confidence 47888 999999999999987 6899998777 999985 55563 57788774 54 577885443
|
AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit. |
| >PF14871 GHL6: Hypothetical glycosyl hydrolase 6 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0004 Score=71.36 Aligned_cols=86 Identities=27% Similarity=0.371 Sum_probs=56.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCC--------CCCCCCccCCCCCH
Q psy9001 314 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT--------HPLWDSRLFNYSEI 385 (1351)
Q Consensus 314 ~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~--------~~~w~~~~ln~~~p 385 (1351)
|.++ .+-|+++|++||++||+|+.=+-++ .-.. .-..++.|+..+++|. .+.|...++| .
T Consensus 39 p~L~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~-------~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~n---s 106 (132)
T PF14871_consen 39 PGLK-RDLLGEQVEACHERGIRVPAYFDFS-WDED-------AAERHPEWFVRDADGRPMRGERFGYPGWYTCCLN---S 106 (132)
T ss_pred CCCC-cCHHHHHHHHHHHCCCEEEEEEeee-cChH-------HHHhCCceeeECCCCCCcCCCCcCCCCceecCCC---c
Confidence 5565 5789999999999999998655554 2111 0012244554444433 1234444554 3
Q ss_pred HHHHHHHHHHHHHHHHcCCCcccccc
Q psy9001 386 EVLRFLLSNLRWYLDEYQFDGFRFDG 411 (1351)
Q Consensus 386 ~v~~~l~~~l~~W~~e~~vDGfR~D~ 411 (1351)
..+++++..++--++.|.+||+=||.
T Consensus 107 ~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 107 PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 45689999999999999999998873
|
|
| >PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0002 Score=87.94 Aligned_cols=107 Identities=15% Similarity=0.191 Sum_probs=60.2
Q ss_pred CceEEEEecC--CccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccC
Q psy9001 178 NLKIYESHVG--ICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 255 (1351)
Q Consensus 178 ~~vIYE~hvr--~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~ 255 (1351)
.-+|||-+-- .|-....--+..-|++. .+-+|++|||. .||-|-+- + ..++
T Consensus 564 SqvIYEgFSNFQ~~~t~~~eytN~~IA~N-a~lFk~wGITs----FemAPQY~--------------------S--s~D~ 616 (809)
T PF02324_consen 564 SQVIYEGFSNFQDFPTTPSEYTNVVIAKN-ADLFKSWGITS----FEMAPQYR--------------------S--STDG 616 (809)
T ss_dssp T-EEEE---TTB---SSGGGSHHHHHHHT-HHHHHHTTEEE----EE----S---------------------B----SS
T ss_pred cchhhccccccccCCCChHHHHHHHHHHh-HHHHHhcCcce----eeeCccee--------------------c--CCCC
Confidence 5599996542 12112223456667776 99999999999 99999221 0 1111
Q ss_pred CC--CccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcC
Q psy9001 256 SH--DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 333 (1351)
Q Consensus 256 s~--~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~G 333 (1351)
+- ....-||.-+|=|.++ + ..| ..||+.+||+..|+++|+.|
T Consensus 617 tFLDSiiqNGYAFtDRYDLg------~----------s~p--------------------tKYGs~~dL~~AikALH~~G 660 (809)
T PF02324_consen 617 TFLDSIIQNGYAFTDRYDLG------M----------SKP--------------------TKYGSVEDLRNAIKALHAAG 660 (809)
T ss_dssp SSHHHHTT-SSSBS-TT-SS------S----------SS---------------------BTTB-HHHHHHHHHHHHHTT
T ss_pred cchhhHhhcCccccchhhhc------C----------CCC--------------------CCCCCHHHHHHHHHHHHHcC
Confidence 10 0123588888877331 1 022 57999999999999999999
Q ss_pred CEEEEEeecccccc
Q psy9001 334 LYVLLDVVHSHASK 347 (1351)
Q Consensus 334 I~VILDvV~NH~~~ 347 (1351)
|+||-|||++....
T Consensus 661 iqviaDwVpdQiYn 674 (809)
T PF02324_consen 661 IQVIADWVPDQIYN 674 (809)
T ss_dssp -EEEEEE-TSEE--
T ss_pred cchhhhhchHhhhC
Confidence 99999999997654
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A. |
| >PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00071 Score=79.38 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCC-----CCCCCCCCCCHHHHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL-----WDSRLFNYSEIEVLRFLLS 1106 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~-----w~~~dlN~~np~Vr~~lid 1106 (1351)
-+=|+.||++||++||+|.-=+.++...... ......++.++.....+.... .+..-||-.+|+||++|++
T Consensus 69 ~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~ 144 (311)
T PF02638_consen 69 FDPLEFMIEEAHKRGLEVHAWFRVGFNAPDV----SHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIID 144 (311)
T ss_pred ccHHHHHHHHHHHcCCEEEEEEEeecCCCch----hhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHH
Confidence 4569999999999999999877554433221 011111222222111111000 1112489999999999999
Q ss_pred HHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccC-----CcCC-------hh-HHHHHHHHHHHHHhhCCCe
Q psy9001 1107 NLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG-----LNVD-------TD-ALIYLMVANKFLHDKYPEI 1173 (1351)
Q Consensus 1107 ~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g-----~~~d-------~~-~~~fl~~~~~~l~~~~Pd~ 1173 (1351)
.++--++.|.|||..||-.-... ...|-...-...|..+.| ...| .+ -..|++.+.+.|++++|++
T Consensus 145 ~v~Eiv~~YdvDGIhlDdy~yp~-~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v 223 (311)
T PF02638_consen 145 IVKEIVKNYDVDGIHLDDYFYPP-PSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWV 223 (311)
T ss_pred HHHHHHhcCCCCeEEeccccccc-ccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999433211 111110000001222222 0112 11 2346788889999999996
Q ss_pred EE
Q psy9001 1174 IT 1175 (1351)
Q Consensus 1174 il 1175 (1351)
.+
T Consensus 224 ~~ 225 (311)
T PF02638_consen 224 KF 225 (311)
T ss_pred eE
Confidence 65
|
|
| >cd02861 E_set_proteins_like E or "early" set-like proteins | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00085 Score=63.12 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=18.9
Q ss_pred CcEEEEeecCCccEEEEEec-ch
Q psy9001 705 NSVRCFEWAPSAQQLYLTGY-NA 726 (1351)
Q Consensus 705 ~~~~~~~WaP~A~~v~l~~~-~~ 726 (1351)
..++|++|||.|++|+|+|. |+
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~ 24 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNN 24 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCC
Confidence 35899999999999999993 44
|
These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >COG1649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0044 Score=74.43 Aligned_cols=132 Identities=15% Similarity=0.171 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeccccccCCcCCc-cc----CCC-CCCcCcccCCCCCCCCC-CCccCCCCCHHHHHHHH
Q psy9001 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL-NE----FDG-TQACFFHDGPRGTHPLW-DSRLFNYSEIEVLRFLL 392 (1351)
Q Consensus 320 ~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~-~~----f~g-~~~~yy~~~~~~~~~~w-~~~~ln~~~p~v~~~l~ 392 (1351)
+-|..+|++||++||+|+-=+-+--++....... .. -.+ ....|+.. ..| ...-||-.+|+||+||.
T Consensus 115 DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~------~~~~~~~~ldPg~Pevq~~i~ 188 (418)
T COG1649 115 DPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRH------QGWGKRVWLDPGIPEVQDFIT 188 (418)
T ss_pred ChHHHHHHHHHhcCCeeeechhhcccCCCCChhHhhCCCCcccCCCCeEEEec------CCceeeeEeCCCChHHHHHHH
Confidence 6689999999999999985444433332210000 00 000 00112211 112 22348999999999999
Q ss_pred HHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccc--cCCC----ccCch---------HHHHHHHHHHHHHhhC
Q psy9001 393 SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE--YFGL----NVDTD---------ALIYLMVANKFLHDKY 457 (1351)
Q Consensus 393 ~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~--~~~~----~~~~~---------~~~f~~~~~~~v~~~~ 457 (1351)
+.+.--+..|.|||.-||---... .+. ++...... .++. ..+.+ ...|++.++..|++.+
T Consensus 189 ~lv~evV~~YdvDGIQfDd~fy~~-~~~----gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavK 263 (418)
T COG1649 189 SLVVEVVRNYDVDGIQFDDYFYYP-IPF----GYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVK 263 (418)
T ss_pred HHHHHHHhCCCCCceecceeeccc-Ccc----ccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 999999999999999999533210 111 11000000 0000 01111 2358889999999999
Q ss_pred CCeEE
Q psy9001 458 PEIIT 462 (1351)
Q Consensus 458 P~~~~ 462 (1351)
|++++
T Consensus 264 p~v~~ 268 (418)
T COG1649 264 PNVKF 268 (418)
T ss_pred CCeEE
Confidence 99876
|
|
| >cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.002 Score=59.44 Aligned_cols=55 Identities=27% Similarity=0.351 Sum_probs=44.7
Q ss_pred ceeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecC
Q psy9001 68 AGLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQH 129 (1351)
Q Consensus 68 ~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~ 129 (1351)
.+++|+ |++|.|+++|++| ...++|.+...|+|++.|+.... .+..|+|++.+..
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~-~~~~~~~~~~~g~w~~~v~~~~~------~~~~Y~~~v~~~~ 63 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGD-TQLIPMTKVEDGYWEVELPLPSP------GKYQYKYVLDGGK 63 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCC-CCcccCEECCCceEEEEEcCCCC------CCeEEEEEEeCCC
Confidence 578999 7899999999885 34689999888999999987651 2469999998543
|
These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >PF14871 GHL6: Hypothetical glycosyl hydrolase 6 | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0077 Score=62.02 Aligned_cols=88 Identities=25% Similarity=0.354 Sum_probs=57.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCC--------CCCCCCCCCCC
Q psy9001 1025 KAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--------PLWDSRLFNYS 1096 (1351)
Q Consensus 1025 idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~--------~~w~~~dlN~~ 1096 (1351)
.+|.++ .+=|+++|++||++||+|+.=+-++ .++. .-..++.|+..+++|.. +.|-...+|
T Consensus 37 ~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~--~d~~------~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~n-- 105 (132)
T PF14871_consen 37 RHPGLK-RDLLGEQVEACHERGIRVPAYFDFS--WDED------AAERHPEWFVRDADGRPMRGERFGYPGWYTCCLN-- 105 (132)
T ss_pred CCCCCC-cCHHHHHHHHHHHCCCEEEEEEeee--cChH------HHHhCCceeeECCCCCCcCCCCcCCCCceecCCC--
Confidence 355666 6778999999999999999765544 1111 00133455554444431 112222344
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEcC
Q psy9001 1097 EIEVLRFLLSNLRWYLEEYQFDGFRFDG 1124 (1351)
Q Consensus 1097 np~Vr~~lid~l~yWl~eygVDGFRfD~ 1124 (1351)
. ..+++++..++--++.|.+|||=||.
T Consensus 106 s-~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 106 S-PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred c-cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 3 45689999999999999999998884
|
|
| >cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.004 Score=74.07 Aligned_cols=93 Identities=23% Similarity=0.359 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCC-cccc--CcCC-CCCCCccccCCCCCCC----CCCC--CCCCCCCCHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKN-VLDG--LNEF-DGTQACFFHDGPRGTH----PLWD--SRLFNYSEIEVLRF 1103 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~-~~~~--l~~~-dg~~~~yf~~~~~g~~----~~w~--~~dlN~~np~Vr~~ 1103 (1351)
+.++||+++|++|++|++=|.+ +...+ +... ...+ .+....||..+..|.. ..|- +.-+|+.||++|+.
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~W 164 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIP-IIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQW 164 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecC-ccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHH
Confidence 5789999999999999985443 22211 0000 0000 1122234544433321 2352 34699999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEcCccc
Q psy9001 1104 LLSNLRWYLEEYQFDGFRFDGVTS 1127 (1351)
Q Consensus 1104 lid~l~yWl~eygVDGFRfD~a~~ 1127 (1351)
..+.++.+++++|||||-+|+...
T Consensus 165 w~~~~~~~~~~~Gidg~w~D~~E~ 188 (340)
T cd06597 165 WMEKRRYLVDELGIDGFKTDGGEH 188 (340)
T ss_pred HHHHHHHHHHhcCCcEEEecCCCc
Confidence 999999999999999999998764
|
CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.019 Score=69.46 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHH
Q psy9001 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW-DSRLFNYSEIEVLRFLLSNLRWY 1111 (1351)
Q Consensus 1033 edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w-~~~dlN~~np~Vr~~lid~l~yW 1111 (1351)
+-|+.|++.+|++||+.=|=+-+--++.+.. .-..++.|....+......+ ....||+++|+|+++|.+.+.-.
T Consensus 104 ~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~-----l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~l 178 (394)
T PF02065_consen 104 NGLKPLADYIHSLGMKFGLWFEPEMVSPDSD-----LYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRL 178 (394)
T ss_dssp THHHHHHHHHHHTT-EEEEEEETTEEESSSC-----HCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCCCeEEEEeccccccchhH-----HHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHH
Confidence 4599999999999999999886665555431 11123344433222111111 11249999999999999999999
Q ss_pred HHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEE
Q psy9001 1112 LEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1175 (1351)
Q Consensus 1112 l~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~il 1175 (1351)
++++|||.|.+|....+... ...... .....-..-+-++.+.|++.+|++++
T Consensus 179 l~~~gidYiK~D~n~~~~~~-------~~~~~~-----~~~~~~~~~~y~l~~~L~~~~P~v~i 230 (394)
T PF02065_consen 179 LREWGIDYIKWDFNRDITEA-------GSPSLP-----EGYHRYVLGLYRLLDRLRARFPDVLI 230 (394)
T ss_dssp HHHTT-SEEEEE-TS-TTS--------SSTTS------GHHHHHHHHHHHHHHHHHHHTTTSEE
T ss_pred HHhcCCCEEEeccccCCCCC-------CCCCch-----HHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 99999999999998766211 000000 00011122234678889999999877
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A .... |
| >cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.017 Score=68.84 Aligned_cols=94 Identities=23% Similarity=0.376 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccC-CcCCc--ccC-CCCCCcCcccCCCCCC----CCCC--CccCCCCCHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKN-VLDGL--NEF-DGTQACFFHDGPRGTH----PLWD--SRLFNYSEIEVLRF 390 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~-~~~~~--~~f-~g~~~~yy~~~~~~~~----~~w~--~~~ln~~~p~v~~~ 390 (1351)
+.++||+++|++|++|+|=+.+ +...+ ...+. ..+ .+....||..+..+.. ..|. +.-+|+.||+++++
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~W 164 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIP-IIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQW 164 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecC-ccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHH
Confidence 5789999999999999985544 22211 00000 001 1222334544433321 2343 35699999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccc
Q psy9001 391 LLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 391 l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
..+.++.+++++|||||.+|+....
T Consensus 165 w~~~~~~~~~~~Gidg~w~D~~E~~ 189 (340)
T cd06597 165 WMEKRRYLVDELGIDGFKTDGGEHV 189 (340)
T ss_pred HHHHHHHHHHhcCCcEEEecCCCcc
Confidence 9999999998899999999977643
|
CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.022 Score=66.87 Aligned_cols=131 Identities=14% Similarity=0.194 Sum_probs=77.9
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCC---CCCC--CCCCCCCCHHHHHHHHHHHH
Q psy9001 1035 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSNLR 1109 (1351)
Q Consensus 1035 fK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~---~~w~--~~dlN~~np~Vr~~lid~l~ 1109 (1351)
.++||+++|++|++|++-+.+ +.+.++. .+. .+....||.....+.. ..|. ..-+|+.||++|+++.+.++
T Consensus 68 ~~~~i~~l~~~G~~~~~~~~P-~i~~~~~-~~~--e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~ 143 (308)
T cd06593 68 PEGMLSRLKEKGFKVCLWINP-YIAQKSP-LFK--EAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLK 143 (308)
T ss_pred HHHHHHHHHHCCCeEEEEecC-CCCCCch-hHH--HHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHH
Confidence 689999999999999999865 5554431 010 1111233433222221 1232 34689999999999999999
Q ss_pred HHHHHhCCCeEEEcCcccccccCCCCCCCCC-CCcccccCCcCChhHHHHHHHHHHHHHhhCCC--eEEEEc
Q psy9001 1110 WYLEEYQFDGFRFDGVTSMLYHNHGCGEGFS-GHYDEYFGLNVDTDALIYLMVANKFLHDKYPE--IITIAE 1178 (1351)
Q Consensus 1110 yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~-~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd--~ilIaE 1178 (1351)
.+++ +|||||-+|....+..+..- ..+.. .... +.-++.+.+.+.+.+++..++ .+++.-
T Consensus 144 ~~~~-~Gid~~~~D~~e~~p~~~~~-~~g~~~~~~h-------n~y~~~~~~~~~~~~~~~~~~~r~~~~~R 206 (308)
T cd06593 144 PLLD-MGVDCFKTDFGERIPTDVVY-YDGSDGEKMH-------NYYALLYNKAVYEATKEVKGEGEAVVWAR 206 (308)
T ss_pred HHHH-hCCcEEecCCCCCCCccccc-cCCCCcceee-------eHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Confidence 8887 69999999988755322100 00000 0011 222455556666667776665 555554
|
YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes. |
| >cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.013 Score=54.06 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=18.0
Q ss_pred CcEEEEeecCCccEEEEEec
Q psy9001 705 NSVRCFEWAPSAQQLYLTGY 724 (1351)
Q Consensus 705 ~~~~~~~WaP~A~~v~l~~~ 724 (1351)
++++|++|||.|++|.|.++
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~ 23 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGS 23 (83)
T ss_pred ccEEEEEECCCCCEEEEEEE
Confidence 35999999999999999994
|
These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. |
| >cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.029 Score=65.89 Aligned_cols=131 Identities=15% Similarity=0.212 Sum_probs=77.8
Q ss_pred HHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCCC---CCCC--CccCCCCCHHHHHHHHHHH
Q psy9001 322 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSNL 395 (1351)
Q Consensus 322 fk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~~---~~w~--~~~ln~~~p~v~~~l~~~l 395 (1351)
.++||+++|++|++|++-+.+ +.+.++. .| .+....|+.....+.. ..|. ..-+|+.||++++++.+.+
T Consensus 68 ~~~~i~~l~~~G~~~~~~~~P-~i~~~~~----~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~ 142 (308)
T cd06593 68 PEGMLSRLKEKGFKVCLWINP-YIAQKSP----LFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKL 142 (308)
T ss_pred HHHHHHHHHHCCCeEEEEecC-CCCCCch----hHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHH
Confidence 689999999999999998875 4544321 11 1111233333222221 2233 3568999999999999999
Q ss_pred HHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCC--eEEEEE
Q psy9001 396 RWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE--IITIAE 465 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~--~~~iaE 465 (1351)
+.+++ +|||||-+|....+..+.. ...+.. ..+ --|.-+..+-+.+.+.+++..++ .+++.-
T Consensus 143 ~~~~~-~Gid~~~~D~~e~~p~~~~-~~~g~~--~~~----~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~R 206 (308)
T cd06593 143 KPLLD-MGVDCFKTDFGERIPTDVV-YYDGSD--GEK----MHNYYALLYNKAVYEATKEVKGEGEAVVWAR 206 (308)
T ss_pred HHHHH-hCCcEEecCCCCCCCcccc-ccCCCC--cce----eeeHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Confidence 98887 8999999998765422100 000000 000 01333455666666777777665 444443
|
YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes. |
| >cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.014 Score=68.44 Aligned_cols=90 Identities=22% Similarity=0.465 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCC----CCCCCC--CCCCCCCCHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRG----THPLWD--SRLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g----~~~~w~--~~dlN~~np~Vr~~lid~ 1107 (1351)
+.++||+++|++|++|++=+-+ +.+.+.. .+. .+....||...+.| ....|. +.-+|+.||++|+.+.+.
T Consensus 71 dp~~mi~~l~~~G~k~~l~i~P-~i~~~s~-~~~--e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 146 (303)
T cd06592 71 DPKGMIDQLHDLGFRVTLWVHP-FINTDSE-NFR--EAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSR 146 (303)
T ss_pred CHHHHHHHHHHCCCeEEEEECC-eeCCCCH-HHH--hhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHH
Confidence 3789999999999999998776 3443321 011 12223344433333 112343 235899999999999999
Q ss_pred HHHHHHHhCCCeEEEcCccc
Q psy9001 1108 LRWYLEEYQFDGFRFDGVTS 1127 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~~ 1127 (1351)
++..+.++|||||-+|....
T Consensus 147 ~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 147 LKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred HHHHHHHhCCcEEEeCCCCc
Confidence 99999889999999998763
|
Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.012 Score=69.31 Aligned_cols=92 Identities=12% Similarity=0.150 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCC---CCCCC--CCCCCCCCHHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~---~~~w~--~~dlN~~np~Vr~~lid~l 1108 (1351)
+.++||+++|++|++|++-+ ..+...+..... -++....||...+.|. ...|. +.-+|+.||++|+...+-+
T Consensus 72 dp~~mi~~Lh~~G~~~~~~i-~P~v~~~~~~~y--~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 148 (317)
T cd06594 72 GLDELIEELKARGIRVLTYI-NPYLADDGPLYY--EEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVI 148 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEe-cCceecCCchhH--HHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHH
Confidence 46899999999999999954 455544321100 0122233444433332 22332 3469999999999999999
Q ss_pred HHHHHHhCCCeEEEcCcccc
Q psy9001 1109 RWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~~m 1128 (1351)
+..+.++|||||=+|+-..+
T Consensus 149 ~~~~~~~Gvdg~w~D~~E~~ 168 (317)
T cd06594 149 KEMLLDLGLSGWMADFGEYL 168 (317)
T ss_pred HHHhhhcCCcEEEecCCCCC
Confidence 98877789999999977644
|
Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. |
| >cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.017 Score=67.76 Aligned_cols=89 Identities=22% Similarity=0.478 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCC-CCCCcCcccCCCCC----CCCCCC--ccCCCCCHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGT----HPLWDS--RLFNYSEIEVLRFLLS 393 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~-g~~~~yy~~~~~~~----~~~w~~--~~ln~~~p~v~~~l~~ 393 (1351)
+.++||+++|++|+++++=+-+ +.+.++. .|. +....|+..++.+. ...|.+ ..+|+.||++++++.+
T Consensus 71 dp~~mi~~l~~~G~k~~l~i~P-~i~~~s~----~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~ 145 (303)
T cd06592 71 DPKGMIDQLHDLGFRVTLWVHP-FINTDSE----NFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLS 145 (303)
T ss_pred CHHHHHHHHHHCCCeEEEEECC-eeCCCCH----HHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHH
Confidence 3789999999999999998777 3443321 111 22234444433331 123433 4689999999999999
Q ss_pred HHHHHHHHcCCCccccccccc
Q psy9001 394 NLRWYLDEYQFDGFRFDGVTS 414 (1351)
Q Consensus 394 ~l~~W~~e~~vDGfR~D~a~~ 414 (1351)
.++..+.++|||||-+|....
T Consensus 146 ~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 146 RLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred HHHHHHHHhCCcEEEeCCCCc
Confidence 999999889999999997653
|
Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.05 Score=65.90 Aligned_cols=129 Identities=17% Similarity=0.158 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCC-CCCCccCCCCCHHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP-LWDSRLFNYSEIEVLRFLLSNLRW 397 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~-~w~~~~ln~~~p~v~~~l~~~l~~ 397 (1351)
|+-|+.|++.+|++||+.=|=+-+--++.++.. + ..++.|....+..... ......||+++|+|++++.+.+.-
T Consensus 103 P~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l----~-~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ 177 (394)
T PF02065_consen 103 PNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDL----Y-REHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDR 177 (394)
T ss_dssp TTHHHHHHHHHHHTT-EEEEEEETTEEESSSCH----C-CSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHCCCeEEEEeccccccchhHH----H-HhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHH
Confidence 356999999999999999888877666554321 1 1112232221111111 111135999999999999999999
Q ss_pred HHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEE
Q psy9001 398 YLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 464 (1351)
Q Consensus 398 W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~ia 464 (1351)
.++++|||.+.+|....+.. ...... . ..-..-..=+-++-+.+++.+|++++-.
T Consensus 178 ll~~~gidYiK~D~n~~~~~-------~~~~~~----~-~~~~~~~~~~y~l~~~L~~~~P~v~iE~ 232 (394)
T PF02065_consen 178 LLREWGIDYIKWDFNRDITE-------AGSPSL----P-EGYHRYVLGLYRLLDRLRARFPDVLIEN 232 (394)
T ss_dssp HHHHTT-SEEEEE-TS-TTS--------SSTTS------GHHHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHhcCCCEEEeccccCCCC-------CCCCCc----h-HHHHHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 99999999999998765521 000000 0 0000001112246677889999987743
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A .... |
| >cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.013 Score=69.04 Aligned_cols=92 Identities=12% Similarity=0.136 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCC---CCCCC--CccCCCCCHHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSNL 395 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~---~~~w~--~~~ln~~~p~v~~~l~~~l 395 (1351)
+.++||+++|++|++|++-+ -.+...+.... .-.+....|+..++.+. ...|. +..+|+.||++++...+.+
T Consensus 72 dp~~mi~~Lh~~G~~~~~~i-~P~v~~~~~~~--y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 148 (317)
T cd06594 72 GLDELIEELKARGIRVLTYI-NPYLADDGPLY--YEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVI 148 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEe-cCceecCCchh--HHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHH
Confidence 36899999999999999954 44544432110 01222234444443332 12333 3568999999999999999
Q ss_pred HHHHHHcCCCcccccccccc
Q psy9001 396 RWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~~~ 415 (1351)
+..+.++|||||-+|+...+
T Consensus 149 ~~~~~~~Gvdg~w~D~~E~~ 168 (317)
T cd06594 149 KEMLLDLGLSGWMADFGEYL 168 (317)
T ss_pred HHHhhhcCCcEEEecCCCCC
Confidence 99877799999999976543
|
Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. |
| >COG1649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.039 Score=66.52 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCcc-------ccCcCCCCCCCccccCCCCCCCCCC-CCCCCCCCCHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVL-------DGLNEFDGTQACFFHDGPRGTHPLW-DSRLFNYSEIEVLRF 1103 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~-------~~l~~~dg~~~~yf~~~~~g~~~~w-~~~dlN~~np~Vr~~ 1103 (1351)
-+=|..+|++||++||+|+-=+-+--++.... .++..-. ...-|+.. ..| ..--||-.+|+||++
T Consensus 114 ~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~-~~~~~~~~------~~~~~~~~ldPg~Pevq~~ 186 (418)
T COG1649 114 YDPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKR-PGWVYVRH------QGWGKRVWLDPGIPEVQDF 186 (418)
T ss_pred CChHHHHHHHHHhcCCeeeechhhcccCCCCChhHhhCCCCcccCC-CCeEEEec------CCceeeeEeCCCChHHHHH
Confidence 45588999999999999997765554444321 1111100 00011111 111 112488999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCC----cCChh---------HHHHHHHHHHHHHhhC
Q psy9001 1104 LLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGL----NVDTD---------ALIYLMVANKFLHDKY 1170 (1351)
Q Consensus 1104 lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~----~~d~~---------~~~fl~~~~~~l~~~~ 1170 (1351)
|.+.+.--++.|.|||.-||---... ...|....-...| ++++ ..+.. ...|++.++..|++++
T Consensus 187 i~~lv~evV~~YdvDGIQfDd~fy~~-~~~gy~~~~~~~y--~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavK 263 (418)
T COG1649 187 ITSLVVEVVRNYDVDGIQFDDYFYYP-IPFGYDPDTVTLY--RYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVK 263 (418)
T ss_pred HHHHHHHHHhCCCCCceecceeeccc-CccccCchHHHHH--HhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 99999999999999999999765421 1111111000000 1111 11222 3457889999999999
Q ss_pred CCeEE
Q psy9001 1171 PEIIT 1175 (1351)
Q Consensus 1171 Pd~il 1175 (1351)
|++++
T Consensus 264 p~v~~ 268 (418)
T COG1649 264 PNVKF 268 (418)
T ss_pred CCeEE
Confidence 99766
|
|
| >KOG3625|consensus | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.024 Score=71.65 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHH-cCCEEEEEeeccccccCCcCC
Q psy9001 318 TPEQLKYLVDECHK-AGLYVLLDVVHSHASKNVLDG 352 (1351)
Q Consensus 318 ~~~efk~LV~~~H~-~GI~VILDvV~NH~~~~~~~~ 352 (1351)
+.+|.++||+.||+ -||--|-|||+|||+.++.|-
T Consensus 194 s~eDV~~lV~~l~rewnvlsi~DvV~NHtAnns~Wl 229 (1521)
T KOG3625|consen 194 SFEDVGQLVEKLKREWNVLSITDVVYNHTANNSKWL 229 (1521)
T ss_pred CHHHHHHHHHHHHhhcCeeeeehhhhhccccCCchh
Confidence 68999999999998 699999999999999987553
|
|
| >cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.024 Score=66.95 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCC---CCCCCC--ccCCCCCHHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSNL 395 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~---~~~w~~--~~ln~~~p~v~~~l~~~l 395 (1351)
+.++||+++|++|++|++=+.+- ...+... .....+....||.....+. ...|.+ .-+|+.||+++++..+.+
T Consensus 65 dp~~~i~~l~~~g~k~~~~~~P~-i~~~~~~-~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~ 142 (317)
T cd06600 65 EPKKLIDELHKRNVKLVTIVDPG-IRVDQNY-SPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLF 142 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeecc-ccCCCCC-hHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHH
Confidence 35799999999999999855443 3322110 0001222234444333322 123443 468999999999999999
Q ss_pred HHHHHHcCCCcccccccc
Q psy9001 396 RWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~ 413 (1351)
+..+.+.|||||-+|...
T Consensus 143 ~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 143 SEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred HHHhhcCCCceEEeeCCC
Confidence 999877999999999654
|
MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do |
| >cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.028 Score=66.32 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCC---CCCCCC--CCCCCCCHHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~---~~~w~~--~dlN~~np~Vr~~lid~l 1108 (1351)
+.++||+.+|++|++|++=+. .+.+.+..... ...+....||.....+. ...|.+ .-+|+.||++++...+.+
T Consensus 65 dp~~~i~~l~~~g~k~~~~~~-P~i~~~~~~~~-~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~ 142 (317)
T cd06600 65 EPKKLIDELHKRNVKLVTIVD-PGIRVDQNYSP-FLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLF 142 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEee-ccccCCCCChH-HHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHH
Confidence 457999999999999999653 34433210000 01112234444333332 223433 358999999999999999
Q ss_pred HHHHHHhCCCeEEEcCcc
Q psy9001 1109 RWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~ 1126 (1351)
+..+.++|||||=+|...
T Consensus 143 ~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 143 SEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred HHHhhcCCCceEEeeCCC
Confidence 998878999999999765
|
MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do |
| >cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.043 Score=64.80 Aligned_cols=89 Identities=12% Similarity=0.236 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCC--CCCCCC--CCCCCCCHHHHHHHHHHHHH
Q psy9001 1035 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT--HPLWDS--RLFNYSEIEVLRFLLSNLRW 1110 (1351)
Q Consensus 1035 fK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~--~~~w~~--~dlN~~np~Vr~~lid~l~y 1110 (1351)
.++||+++|++|++||+-+. .+.+.+... +. ++....||.....+. ...|.+ .-+|+.||++++...+.++-
T Consensus 68 p~~mi~~L~~~G~kv~~~i~-P~v~~~~~~-y~--e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~ 143 (319)
T cd06591 68 PKAMVRELHEMNAELMISIW-PTFGPETEN-YK--EMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKK 143 (319)
T ss_pred HHHHHHHHHHCCCEEEEEec-CCcCCCChh-HH--HHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHH
Confidence 57899999999999999543 444433210 00 111223444333222 234533 46999999999998887766
Q ss_pred HHHHhCCCeEEEcCccc
Q psy9001 1111 YLEEYQFDGFRFDGVTS 1127 (1351)
Q Consensus 1111 Wl~eygVDGFRfD~a~~ 1127 (1351)
-+.++|||||=+|....
T Consensus 144 ~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 144 NYYDKGVDAWWLDAAEP 160 (319)
T ss_pred HhhcCCCcEEEecCCCC
Confidence 56678999999999863
|
XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes. |
| >cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37 | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.048 Score=64.36 Aligned_cols=89 Identities=13% Similarity=0.208 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCC----CCCCCC--CCCCCCCHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT----HPLWDS--RLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~----~~~w~~--~dlN~~np~Vr~~lid~ 1107 (1351)
+.++||+++|++|++|++-+. .+.+.++. .+. .+....||.....+. ...|.+ .-+|+.||++++...+.
T Consensus 74 dp~~mi~~L~~~g~k~~~~i~-P~i~~~~~-~y~--e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 149 (317)
T cd06599 74 DPAAFVAKFHERGIRLAPNIK-PGLLQDHP-RYK--ELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEG 149 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeC-CcccCCCH-HHH--HHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHH
Confidence 467999999999999999554 33433321 000 112223443322221 223433 35999999999999999
Q ss_pred HHHHHHHhCCCeEEEcCcc
Q psy9001 1108 LRWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~ 1126 (1351)
++.-+.+.|||||=+|...
T Consensus 150 ~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 150 VKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred HHHHHhcCCCcEEEecCCC
Confidence 9777777899999999775
|
The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.048 Score=64.96 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCEEEEEeeccccccCC-cCCcccC-CCCCCcCcccCCCCCC---CCCCC--ccCCCCCHHHHHHHHHHH
Q psy9001 323 KYLVDECHKAGLYVLLDVVHSHASKNV-LDGLNEF-DGTQACFFHDGPRGTH---PLWDS--RLFNYSEIEVLRFLLSNL 395 (1351)
Q Consensus 323 k~LV~~~H~~GI~VILDvV~NH~~~~~-~~~~~~f-~g~~~~yy~~~~~~~~---~~w~~--~~ln~~~p~v~~~l~~~l 395 (1351)
++||+++|++|++|++=+.+ |...+. ......| .+....||..+..+.. ..|.+ .-+|+.||++++...+.+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P-~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 147 (339)
T cd06602 69 PEFVDELHANGQHYVPILDP-AISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEI 147 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeC-ccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHH
Confidence 89999999999999996554 333221 0011111 1222334444333321 23333 458999999999999999
Q ss_pred HHHHHHcCCCcccccccc
Q psy9001 396 RWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~ 413 (1351)
+..++++|||||-+|...
T Consensus 148 ~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 148 KDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred HHHHhcCCCcEEEecCCC
Confidence 999988999999999754
|
MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of |
| >cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.044 Score=64.71 Aligned_cols=88 Identities=13% Similarity=0.249 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCC--CCCCCC--ccCCCCCHHHHHHHHHHHH
Q psy9001 322 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT--HPLWDS--RLFNYSEIEVLRFLLSNLR 396 (1351)
Q Consensus 322 fk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~--~~~w~~--~~ln~~~p~v~~~l~~~l~ 396 (1351)
.++||+++|++|++||+-+. -+...+.. .| .+....||..+..+. ...|.+ ..+|+.||+++++..+.++
T Consensus 68 p~~mi~~L~~~G~kv~~~i~-P~v~~~~~----~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~ 142 (319)
T cd06591 68 PKAMVRELHEMNAELMISIW-PTFGPETE----NYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLK 142 (319)
T ss_pred HHHHHHHHHHCCCEEEEEec-CCcCCCCh----hHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHH
Confidence 57899999999999999553 34443321 11 111123443333222 133543 5799999999999888877
Q ss_pred HHHHHcCCCccccccccc
Q psy9001 397 WYLDEYQFDGFRFDGVTS 414 (1351)
Q Consensus 397 ~W~~e~~vDGfR~D~a~~ 414 (1351)
.-+.++|||||-+|....
T Consensus 143 ~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 143 KNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred HHhhcCCCcEEEecCCCC
Confidence 666679999999998763
|
XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes. |
| >PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.047 Score=66.00 Aligned_cols=44 Identities=32% Similarity=0.359 Sum_probs=37.8
Q ss_pred ccccccccCCCCC------HHHHHHHHHHHH-HcCCEEEEEeecccccCCc
Q psy9001 1019 LVDECHKAGLFGT------PEQLKYLVDECH-KAGLYVLLDVVHSHASKNV 1062 (1351)
Q Consensus 1019 ~~Dy~~idp~yGt------~edfK~LV~~aH-~~GI~VILDVV~NHts~~~ 1062 (1351)
+.|...+||.+.. .+++++||.+++ +.||.+|.|||+|||+.+.
T Consensus 56 I~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~NHtA~nS 106 (423)
T PF14701_consen 56 IYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVVLNHTANNS 106 (423)
T ss_pred ccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEeeccCcCCC
Confidence 6677888877544 479999999995 7999999999999999987
|
|
| >cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.083 Score=62.99 Aligned_cols=90 Identities=17% Similarity=0.277 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCEEEEEeecccccCCc-cccCcCC-CCCCCccccCCCCCCC---CCCC--CCCCCCCCHHHHHHHHHHH
Q psy9001 1036 KYLVDECHKAGLYVLLDVVHSHASKNV-LDGLNEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1036 K~LV~~aH~~GI~VILDVV~NHts~~~-~~~l~~~-dg~~~~yf~~~~~g~~---~~w~--~~dlN~~np~Vr~~lid~l 1108 (1351)
++||+++|++|++|++=+. -|...+. ......+ ++....||..+..|.. ..|. +.-+|+.||++|+...+.+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~-P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 147 (339)
T cd06602 69 PEFVDELHANGQHYVPILD-PAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEI 147 (339)
T ss_pred HHHHHHHHHCCCEEEEEEe-CccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHH
Confidence 8999999999999999754 3333321 0000001 1122234443333321 2332 2358999999999999999
Q ss_pred HHHHHHhCCCeEEEcCcc
Q psy9001 1109 RWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~ 1126 (1351)
+..++++|||||=+|...
T Consensus 148 ~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 148 KDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred HHHHhcCCCcEEEecCCC
Confidence 999998999999999765
|
MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of |
| >cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37 | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.064 Score=63.32 Aligned_cols=88 Identities=14% Similarity=0.228 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCC----CCCCCC--ccCCCCCHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT----HPLWDS--RLFNYSEIEVLRFLLS 393 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~----~~~w~~--~~ln~~~p~v~~~l~~ 393 (1351)
+.++||+++|++|++|++-+.+- .+.++. .| .+....||.....+. ...|.+ ..+|+.||+++++..+
T Consensus 74 dp~~mi~~L~~~g~k~~~~i~P~-i~~~~~----~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 148 (317)
T cd06599 74 DPAAFVAKFHERGIRLAPNIKPG-LLQDHP----RYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKE 148 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCc-ccCCCH----HHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHH
Confidence 46799999999999999855443 333221 11 112233443332222 123433 4689999999999999
Q ss_pred HHHHHHHHcCCCcccccccc
Q psy9001 394 NLRWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 394 ~l~~W~~e~~vDGfR~D~a~ 413 (1351)
.++.-+.+.|||||-+|...
T Consensus 149 ~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 149 GVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred HHHHHHhcCCCcEEEecCCC
Confidence 99777777999999999765
|
The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.39 Score=60.57 Aligned_cols=155 Identities=17% Similarity=0.263 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcC--cccCCCCC------CCCCCC--ccCCCCCH
Q psy9001 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACF--FHDGPRGT------HPLWDS--RLFNYSEI 385 (1351)
Q Consensus 316 ~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~y--y~~~~~~~------~~~w~~--~~ln~~~p 385 (1351)
.-..+-.|.+|++||+.||++|.=.-..-...+ ..-+|..+.+ |....... ...|.. ..+|..|+
T Consensus 166 ~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~-----~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~ 240 (559)
T PF13199_consen 166 QISTSTVKDYINAAHKYGMKAMAYNMIYAANNN-----YEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNP 240 (559)
T ss_dssp EEEHHHHHHHHHHHHHTT-EEEEEEESSEEETT-------S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-H
T ss_pred EehHHHHHHHHHHHHHcCcceehhHhhhccccC-----cccccCCchhhhhhccCCCccceeecCcccccceEEecCCCH
Confidence 334688999999999999998853222211111 0112333322 22221110 123544 46799999
Q ss_pred HHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCcc-CchHHHHHHHHHHHHHhhCCCeEEEE
Q psy9001 386 EVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV-DTDALIYLMVANKFLHDKYPEIITIA 464 (1351)
Q Consensus 386 ~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~f~~~~~~~v~~~~P~~~~ia 464 (1351)
+-|++|++.+...++++|+|||.+|........ .++-|..+ ++.. .| ..+..++++..|+..++-
T Consensus 241 ~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~------------~d~~G~~i~~l~~-~y-~~Fi~~~K~~~~~k~lv~ 306 (559)
T PF13199_consen 241 EWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTV------------YDYDGNKIYDLSD-GY-ASFINAMKEALPDKYLVF 306 (559)
T ss_dssp HHHHHHHHHHHHHHHHHT--EEEEE-S--EEEE------------GGTT---GGECHH-HH-HHHHHHHHHHSTTSEEEE
T ss_pred HHHHHHHHHHHHHHHccCCceEeeeccCCCCcc------------ccCCCCCchhhHH-HH-HHHHHHHHHhCCCCceee
Confidence 999999999999999999999999987743111 11112223 2221 22 333445556667777766
Q ss_pred EcCCCCCCcccccccCCCCCCCcCC--cCC
Q psy9001 465 EDVSGMPASCRPVTEGGTGFDYRLE--IRP 492 (1351)
Q Consensus 465 E~~~~~p~~~~~~~~gg~gfd~~~~--~~~ 492 (1351)
-...+++.-.... ...-|+.++ |..
T Consensus 307 N~V~~~g~~~~a~---~~~~d~lY~EvW~~ 333 (559)
T PF13199_consen 307 NAVSGYGIEQIAK---TSKVDFLYNEVWDD 333 (559)
T ss_dssp B-GGGTTHHHHTT----S--SSEEEE--SB
T ss_pred eccCccchhhhhc---ccccceeeeecccc
Confidence 6554444322111 144556666 743
|
|
| >PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.087 Score=65.78 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=34.7
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHHHHHHHH---------HcCCCcccccccccc
Q psy9001 370 GTHPLWDSRLFNYSEIEVLRFLLSNLRWYLD---------EYQFDGFRFDGVTSM 415 (1351)
Q Consensus 370 ~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~---------e~~vDGfR~D~a~~~ 415 (1351)
+.+..--.+++|=+||.|+..-+.++.|.+. +..+||+|+|+|..+
T Consensus 136 gGyEfLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNV 190 (809)
T PF02324_consen 136 GGYEFLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNV 190 (809)
T ss_dssp SS-S--SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS
T ss_pred CcceeEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeeccccc
Confidence 3444344678999999999999999999997 678999999999876
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A. |
| >TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.44 Score=56.09 Aligned_cols=135 Identities=13% Similarity=0.236 Sum_probs=82.5
Q ss_pred ccccccCCCCCHHH--H-HHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccC-----CC---CCCCCCC-
Q psy9001 1021 DECHKAGLFGTPEQ--L-KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHD-----GP---RGTHPLW- 1088 (1351)
Q Consensus 1021 Dy~~idp~yGt~ed--f-K~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~-----~~---~g~~~~w- 1088 (1351)
|...|||..++.++ | ++=|+++|+.|.+||-=+- .+.-. ..+.||.. .+ .+..++|
T Consensus 66 d~vVID~~~~g~~~~~fs~~~i~~Lk~~g~~viaYlS---vGe~E---------~~R~y~~~~~~~~~~~~l~~~n~~W~ 133 (315)
T TIGR01370 66 ELVVIDYSKDGTEDGTYSPEEIVRAAAAGRWPIAYLS---IGAAE---------DYRFYWQKGWKVNAPAWLGNEDPDWP 133 (315)
T ss_pred CEEEEccccccCcccCCCHHHHHHHHhCCcEEEEEEE---chhcc---------ccchhhhhhhhcCCHHHhCCCCCCCC
Confidence 44556665541111 1 3456778899988763321 11111 11122221 01 2456778
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHh
Q psy9001 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD 1168 (1351)
Q Consensus 1089 ~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~ 1168 (1351)
+...+++.+++.|++|++-+.--++. |+|||=+|.+....+.... +.++. ....+-+.+++.+.+.+|+
T Consensus 134 g~~~vd~~~~~W~~il~~rl~~l~~k-GfDGvfLD~lDsy~~~~~~-~~~~~---------~~~~~m~~~i~~Ia~~ar~ 202 (315)
T TIGR01370 134 GNYDVKYWDPEWKAIAFSYLDRVIAQ-GFDGVYLDLIDAFEYWAEN-GDNRP---------GAAAEMIAFVCEIAAYARA 202 (315)
T ss_pred CceeEecccHHHHHHHHHHHHHHHHc-CCCeEeeccchhhhhhccc-CCcch---------hhHHHHHHHHHHHHHHHHH
Confidence 77789999999999999888776665 9999999999865321100 00000 0013346788888888999
Q ss_pred hCCCeEEEEc
Q psy9001 1169 KYPEIITIAE 1178 (1351)
Q Consensus 1169 ~~Pd~ilIaE 1178 (1351)
.+|++++|.-
T Consensus 203 ~~P~~~II~N 212 (315)
T TIGR01370 203 QNPQFVIIPQ 212 (315)
T ss_pred HCCCEEEEec
Confidence 9999999853
|
Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases. |
| >PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.49 Score=59.68 Aligned_cols=93 Identities=18% Similarity=0.325 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccc--cCCCCCC------CCCCCC--CCCCCCCHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFF--HDGPRGT------HPLWDS--RLFNYSEIEV 1100 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf--~~~~~g~------~~~w~~--~dlN~~np~V 1100 (1351)
..+-.|.+|++||+.||++|.=.-+.-+..+.. .+|..+.|+ ....... ...|.+ .-+|-.|++=
T Consensus 168 ~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~-----~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~W 242 (559)
T PF13199_consen 168 STSTVKDYINAAHKYGMKAMAYNMIYAANNNYE-----EDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEW 242 (559)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEEEESSEEETT-------S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHH
T ss_pred hHHHHHHHHHHHHHcCcceehhHhhhccccCcc-----cccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHH
Confidence 378899999999999999987543332222210 133333333 2222110 123433 3579999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEcCcccc
Q psy9001 1101 LRFLLSNLRWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1101 r~~lid~l~yWl~eygVDGFRfD~a~~m 1128 (1351)
|++|++.+...++++|+|||.+|.++..
T Consensus 243 Q~yI~~q~~~~~~~~gFDG~hlDq~G~~ 270 (559)
T PF13199_consen 243 QNYIINQMNKAIQNFGFDGWHLDQLGNR 270 (559)
T ss_dssp HHHHHHHHHHHHHHHT--EEEEE-S--E
T ss_pred HHHHHHHHHHHHHccCCceEeeeccCCC
Confidence 9999999999999999999999999744
|
|
| >PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=92.20 E-value=3.1 Score=47.39 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCC-CccCCCCCHHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD-SRLFNYSEIEVLRFLLSNLRW 397 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~-~~~ln~~~p~v~~~l~~~l~~ 397 (1351)
.+.|+++|++|+++||+||||+--. . .|. ........+...+++.+.++.
T Consensus 61 ~~~ld~~v~~a~~~gi~vild~h~~---~--------------------------~w~~~~~~~~~~~~~~~~~~~~~~~ 111 (281)
T PF00150_consen 61 LARLDRIVDAAQAYGIYVILDLHNA---P--------------------------GWANGGDGYGNNDTAQAWFKSFWRA 111 (281)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEES---T--------------------------TCSSSTSTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccC---c--------------------------cccccccccccchhhHHHHHhhhhh
Confidence 6789999999999999999988654 1 010 011222334456667777778
Q ss_pred HHHHcC----CCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEc
Q psy9001 398 YLDEYQ----FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAED 466 (1351)
Q Consensus 398 W~~e~~----vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~ 466 (1351)
++..|. |-|| |.+.+.... ... ..+ .......-..+.+.+.++||+..|+..++.+.
T Consensus 112 la~~y~~~~~v~~~--el~NEP~~~----~~~-----~~w-~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 112 LAKRYKDNPPVVGW--ELWNEPNGG----NDD-----ANW-NAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHHHTTTTTTEEE--ESSSSGCST----TST-----TTT-SHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred hccccCCCCcEEEE--EecCCcccc----CCc-----ccc-ccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 888772 2222 333222000 000 000 00001122468889999999999998888776
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A .... |
| >cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.18 Score=60.15 Aligned_cols=89 Identities=19% Similarity=0.322 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCC---CCCCCC--ccCCCCCHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~---~~~w~~--~~ln~~~p~v~~~l~~~ 394 (1351)
+.++||+++|++|++|++=+.+ |...+.. ...| .+....||....++. ...|.+ .-+|+.||+++++..+.
T Consensus 65 dp~~m~~~l~~~g~~~~~~~~P-~v~~~~~--~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 141 (339)
T cd06604 65 DPKELIKELHEQGFKVVTIIDP-GVKVDPG--YDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSL 141 (339)
T ss_pred CHHHHHHHHHHCCCEEEEEEeC-ceeCCCC--ChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHH
Confidence 3579999999999999976544 2222110 0111 122233443333332 123433 35799999999999999
Q ss_pred HHHHHHHcCCCcccccccc
Q psy9001 395 LRWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 395 l~~W~~e~~vDGfR~D~a~ 413 (1351)
++..++ .|||||-+|...
T Consensus 142 ~~~~~~-~Gvdg~w~D~~E 159 (339)
T cd06604 142 YKKFVD-LGVDGIWNDMNE 159 (339)
T ss_pred HHHHhh-CCCceEeecCCC
Confidence 998774 899999999765
|
Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source. |
| >PRK10658 putative alpha-glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.47 Score=61.44 Aligned_cols=90 Identities=12% Similarity=0.257 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCC---CCC--CCCCCCCCHHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP---LWD--SRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~---~w~--~~dlN~~np~Vr~~lid~l 1108 (1351)
+.+.||+++|++|++|++=+.+ +...++. .+. .+....||...++|... .|. +.-+|+.||++|+...+.+
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~~s~-~f~--e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~ 401 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQKSP-LFK--EGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKL 401 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCCCch-HHH--HHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHH
Confidence 3568999999999999987654 3332220 000 12223455544444322 342 3469999999999999999
Q ss_pred HHHHHHhCCCeEEEcCcccc
Q psy9001 1109 RWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~~m 1128 (1351)
+..++ +|||||-+|....+
T Consensus 402 ~~l~d-~Gvdgfw~D~gE~~ 420 (665)
T PRK10658 402 KGLLD-MGVDCFKTDFGERI 420 (665)
T ss_pred HHHHh-cCCcEEEecCCcee
Confidence 99776 69999999976544
|
|
| >PRK10426 alpha-glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.57 Score=60.47 Aligned_cols=91 Identities=9% Similarity=0.088 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCC---CCC--CCCCCCCCCHHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH---PLW--DSRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~---~~w--~~~dlN~~np~Vr~~lid~l 1108 (1351)
+.++||+++|++|++|++=+.+ |...+.. -.. ++....||..+.+|.. ..| .+.-+|+.||++|+...+.+
T Consensus 270 dp~~mi~~L~~~G~k~v~~i~P-~v~~~~~-~y~--e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~ 345 (635)
T PRK10426 270 QLDSRIKQLNEEGIQFLGYINP-YLASDGD-LCE--EAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVI 345 (635)
T ss_pred CHHHHHHHHHHCCCEEEEEEcC-ccCCCCH-HHH--HHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHH
Confidence 4678999999999999998654 2322210 000 0112234443333321 122 23469999999999999998
Q ss_pred HHHHHHhCCCeEEEcCcccc
Q psy9001 1109 RWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~~m 1128 (1351)
+..+.++|||||=+|.-..+
T Consensus 346 ~~~~~~~Gvdg~w~D~~E~~ 365 (635)
T PRK10426 346 KKNMIGLGCSGWMADFGEYL 365 (635)
T ss_pred HHHHhhcCCCEEeeeCCCCC
Confidence 87777789999999976644
|
|
| >cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.34 Score=56.65 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLE 1113 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~ 1113 (1351)
|.++||+++|++|++||+-+.+............. +..+.......-....+|+.||+.++...+.++.-+.
T Consensus 75 dp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~--------~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~ 146 (292)
T cd06595 75 DPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPE--------MAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLE 146 (292)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHH--------HHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHH
Confidence 45899999999999999988664311111000000 1100000000001125799999999987777766677
Q ss_pred HhCCCeEEEcCcc
Q psy9001 1114 EYQFDGFRFDGVT 1126 (1351)
Q Consensus 1114 eygVDGFRfD~a~ 1126 (1351)
++|||||=.|.-.
T Consensus 147 ~~Gidg~W~D~~E 159 (292)
T cd06595 147 KQGVDFWWLDWQQ 159 (292)
T ss_pred hcCCcEEEecCCC
Confidence 7899999999643
|
Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.24 Score=59.09 Aligned_cols=89 Identities=19% Similarity=0.322 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCC-CCCCCccccCCCCCC---CCCCC--CCCCCCCCHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~-dg~~~~yf~~~~~g~---~~~w~--~~dlN~~np~Vr~~lid~ 1107 (1351)
+.++||+++|++|++|++=+.+ |...+.. ...+ .+....||.....|. ...|. +.-+|+.||++++...+.
T Consensus 65 dp~~m~~~l~~~g~~~~~~~~P-~v~~~~~--~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 141 (339)
T cd06604 65 DPKELIKELHEQGFKVVTIIDP-GVKVDPG--YDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSL 141 (339)
T ss_pred CHHHHHHHHHHCCCEEEEEEeC-ceeCCCC--ChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHH
Confidence 3579999999999999987543 3322110 0000 111223443333332 12342 234899999999999999
Q ss_pred HHHHHHHhCCCeEEEcCcc
Q psy9001 1108 LRWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~ 1126 (1351)
++..+ +.|||||=+|...
T Consensus 142 ~~~~~-~~Gvdg~w~D~~E 159 (339)
T cd06604 142 YKKFV-DLGVDGIWNDMNE 159 (339)
T ss_pred HHHHh-hCCCceEeecCCC
Confidence 99877 5799999999875
|
Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source. |
| >PLN02950 4-alpha-glucanotransferase | Back alignment and domain information |
|---|
Probab=91.56 E-value=3.5 Score=55.28 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=75.5
Q ss_pred CceeEEE--------EEEEEEEee---cCCCCcc-ccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceee
Q psy9001 67 KAGLLCF--------MHVVCAAGD---FNNWNRE-EFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLD 134 (1351)
Q Consensus 67 ~~gv~F~--------A~~V~LvGD---FN~Wd~~-~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~ 134 (1351)
+..|+|. -++|.|+|+ +-+|+.. ..+|.......|++.+.-. .+. .--.|||.+.+.+|...+
T Consensus 152 ~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp-~~~----~~~EYKyv~~~~~g~v~W 226 (909)
T PLN02950 152 EIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVP-KSD----FPIKYKYALQTAEGLVSL 226 (909)
T ss_pred ceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEec-CCC----ceEEEEEEEEcCCCceEE
Confidence 3457888 357889984 5689864 4677766788999998421 110 113899999876665443
Q ss_pred ccCCcceEEecCCCCccceeeeeeCCCCCCCCccCCCCCCCCCCceEEEEecCCccCC--CCCCCHHHHHHhhhHHHHHc
Q psy9001 135 RLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQE--QKCASYEDFVRVVIPRIVKQ 212 (1351)
Q Consensus 135 ~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~p~~~~~~vIYE~hvr~ft~~--~~~G~~~gi~~~~L~yLk~L 212 (1351)
-..+=.. +..+..... -...+..+.. ... .+.....-++ +|+-+.... -+.|+|.++. +.++.+++.
T Consensus 227 E~g~NR~-~~~p~~~~~-~~~~~~~~~~----~~~--~~~~R~~Gi~--~~l~SLrS~~s~GIGDf~dl~-~~id~~a~~ 295 (909)
T PLN02950 227 ELGVNRE-LSLDSSSGK-PPSYIVASDG----AFR--EMPWRGAGVA--VPVFSIRSEEDVGVGEFLDLK-LLVDWAVKS 295 (909)
T ss_pred eeCCCce-eecCcccCC-ceEEEecccc----ccc--CCCccceEEE--EecccCCCCCCCCeeCHHHHH-HHHHHHHHc
Confidence 2222221 111111000 0011111110 111 1111122222 233222122 3689998765 469999999
Q ss_pred CCCcCceeEEEee
Q psy9001 213 GMAIPDKWIELLK 225 (1351)
Q Consensus 213 Gvt~~~~~I~L~P 225 (1351)
|.+. |+|+|
T Consensus 296 G~~~----~QilP 304 (909)
T PLN02950 296 GLHL----VQLLP 304 (909)
T ss_pred CCCE----EEECC
Confidence 9999 99999
|
|
| >PRK10426 alpha-glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.6 Score=60.23 Aligned_cols=90 Identities=9% Similarity=0.109 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCCC---CCCC--CccCCCCCHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~~---~~w~--~~~ln~~~p~v~~~l~~~ 394 (1351)
+.++||+++|++|++|++=+-+-= ..+.. .| .+....||..+.++.. ..|. +..+|+.||++|+...+.
T Consensus 270 dp~~mi~~L~~~G~k~v~~i~P~v-~~~~~----~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~ 344 (635)
T PRK10426 270 QLDSRIKQLNEEGIQFLGYINPYL-ASDGD----LCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEV 344 (635)
T ss_pred CHHHHHHHHHHCCCEEEEEEcCcc-CCCCH----HHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHH
Confidence 468899999999999998765532 22211 11 1122334443333221 1232 346899999999999999
Q ss_pred HHHHHHHcCCCcccccccccc
Q psy9001 395 LRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 395 l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
++..+.+.|||||-+|....+
T Consensus 345 ~~~~~~~~Gvdg~w~D~~E~~ 365 (635)
T PRK10426 345 IKKNMIGLGCSGWMADFGEYL 365 (635)
T ss_pred HHHHHhhcCCCEEeeeCCCCC
Confidence 987777799999999976543
|
|
| >cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.33 Score=57.41 Aligned_cols=87 Identities=13% Similarity=0.197 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCcc-ccCCCCCC---CCCC--CCCCCCCCCHHHHHHHHHHH
Q psy9001 1035 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACF-FHDGPRGT---HPLW--DSRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1035 fK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~y-f~~~~~g~---~~~w--~~~dlN~~np~Vr~~lid~l 1108 (1351)
.++||+.+|++|++|++=+.+ +...++.. +. .+....| +.....+. ...| .+.-+|+.||++++...+.+
T Consensus 72 p~~mi~~L~~~G~k~~~~v~P-~v~~~~~~-y~--e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~ 147 (317)
T cd06598 72 PAGMIADLAKKGVKTIVITEP-FVLKNSKN-WG--EAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNY 147 (317)
T ss_pred HHHHHHHHHHcCCcEEEEEcC-cccCCchh-HH--HHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHH
Confidence 478999999999999998742 33322210 00 0111122 33222221 1233 24468999999999999999
Q ss_pred HHHHHHhCCCeEEEcCcc
Q psy9001 1109 RWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~ 1126 (1351)
+.. .++|||||=+|...
T Consensus 148 ~~~-~~~Gvdg~w~D~~E 164 (317)
T cd06598 148 KKL-IDQGVTGWWGDLGE 164 (317)
T ss_pred HHh-hhCCccEEEecCCC
Confidence 887 55799999999874
|
CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PRK10658 putative alpha-glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.23 Score=64.19 Aligned_cols=89 Identities=15% Similarity=0.305 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCCC---CCCC--CccCCCCCHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~~---~~w~--~~~ln~~~p~v~~~l~~~ 394 (1351)
+.+.||+++|++|++|++=+.+ +...++. .| .+....||..+++|.. ..|. ..-+|+.||++|++..+.
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~~s~----~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~ 400 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQKSP----LFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADK 400 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCCCch----HHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHH
Confidence 4578999999999999987655 3332211 11 1223345555444432 2353 356899999999999999
Q ss_pred HHHHHHHcCCCcccccccccc
Q psy9001 395 LRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 395 l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
++..++ .|||||-.|....+
T Consensus 401 ~~~l~d-~Gvdgfw~D~gE~~ 420 (665)
T PRK10658 401 LKGLLD-MGVDCFKTDFGERI 420 (665)
T ss_pred HHHHHh-cCCcEEEecCCcee
Confidence 999776 89999999965543
|
|
| >PF13200 DUF4015: Putative glycosyl hydrolase domain | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.8 Score=51.09 Aligned_cols=85 Identities=19% Similarity=0.261 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccc---cccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 395 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH---~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l 395 (1351)
+.++++|++.||++||.+|-=+|.=- .+..++ -+.+......-|.+.. ...| +|-.+++|++|+++.+
T Consensus 60 i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~~~p--e~av~~~~G~~w~d~~---~~~W----vnP~~~evw~Y~i~IA 130 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYPIARIVVFKDPVLAEAHP--EWAVKTKDGSVWRDNE---GEAW----VNPYSKEVWDYNIDIA 130 (316)
T ss_pred ccCHHHHHHHHHHCCCEEEEEEEEecChHHhhhCh--hhEEECCCCCcccCCC---CCcc----CCCCCHHHHHHHHHHH
Confidence 57899999999999999999887411 111110 0111111111111110 1123 7889999999999999
Q ss_pred HHHHHHcCCCcccccccc
Q psy9001 396 RWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~ 413 (1351)
+--++ .|+|..-||-+-
T Consensus 131 ~Eaa~-~GFdEIqfDYIR 147 (316)
T PF13200_consen 131 KEAAK-LGFDEIQFDYIR 147 (316)
T ss_pred HHHHH-cCCCEEEeeeee
Confidence 99887 899999999643
|
|
| >cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.38 Score=56.24 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLD 400 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~ 400 (1351)
+.++||+++|++|++||+-+.+......... .+.. +..........-....+|+.||+.++...+.+..-+.
T Consensus 75 dp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~---~y~~-----~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~ 146 (292)
T cd06595 75 DPEKLLQDLHDRGLKVTLNLHPADGIRAHED---QYPE-----MAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLE 146 (292)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCCcccCCCcH---HHHH-----HHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHH
Confidence 4589999999999999998877532111000 0000 0000000000001135799999999988787777677
Q ss_pred HcCCCcccccccc
Q psy9001 401 EYQFDGFRFDGVT 413 (1351)
Q Consensus 401 e~~vDGfR~D~a~ 413 (1351)
++|||||-.|...
T Consensus 147 ~~Gidg~W~D~~E 159 (292)
T cd06595 147 KQGVDFWWLDWQQ 159 (292)
T ss_pred hcCCcEEEecCCC
Confidence 7999999999643
|
Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.14 Score=63.13 Aligned_cols=92 Identities=22% Similarity=0.426 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCcc--ccCcCCCCCCCccccCCCCCC---CCCCC--CCCCCCCCHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVL--DGLNEFDGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLS 1106 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~--~~l~~~dg~~~~yf~~~~~g~---~~~w~--~~dlN~~np~Vr~~lid 1106 (1351)
++++||+.+|++|++|++-+.+ +...... ..+.. +....++...+.+. ...|. +.-+|+.||++++...+
T Consensus 84 d~~~~~~~l~~~G~~~~~~~~P-~v~~~~~~~~~~~~--~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~ 160 (441)
T PF01055_consen 84 DPKQMIDELHDQGIKVVLWVHP-FVSNDSPDYENYDE--AKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKE 160 (441)
T ss_dssp THHHHHHHHHHTT-EEEEEEES-EEETTTTB-HHHHH--HHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHH
T ss_pred chHHHHHhHhhCCcEEEEEeec-ccCCCCCcchhhhh--HhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHH
Confidence 7889999999999999998876 3333321 00000 01123333333331 11243 34699999999999999
Q ss_pred HHHHHHHHhCCCeEEEcCcccc
Q psy9001 1107 NLRWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1107 ~l~yWl~eygVDGFRfD~a~~m 1128 (1351)
.++..++.+|||||-+|.....
T Consensus 161 ~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 161 QLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp HHHHHHTTST-SEEEEESTTTB
T ss_pred HHHHHHhccCCceEEeecCCcc
Confidence 9999999999999999996533
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A .... |
| >cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.33 Score=57.40 Aligned_cols=86 Identities=13% Similarity=0.173 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcC-cccCCCCC---CCCCC--CccCCCCCHHHHHHHHHH
Q psy9001 322 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACF-FHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 322 fk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~y-y~~~~~~~---~~~w~--~~~ln~~~p~v~~~l~~~ 394 (1351)
.++||+++|++|++|++=+.+- ...++.. | .+....| +.....+. ...|. +.-+|+.||+++++..+.
T Consensus 72 p~~mi~~L~~~G~k~~~~v~P~-v~~~~~~----y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 146 (317)
T cd06598 72 PAGMIADLAKKGVKTIVITEPF-VLKNSKN----WGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDN 146 (317)
T ss_pred HHHHHHHHHHcCCcEEEEEcCc-ccCCchh----HHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHH
Confidence 4789999999999999876532 2222111 1 1111223 33222221 12232 457899999999999999
Q ss_pred HHHHHHHcCCCcccccccc
Q psy9001 395 LRWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 395 l~~W~~e~~vDGfR~D~a~ 413 (1351)
++.. .+.|||||-+|...
T Consensus 147 ~~~~-~~~Gvdg~w~D~~E 164 (317)
T cd06598 147 YKKL-IDQGVTGWWGDLGE 164 (317)
T ss_pred HHHh-hhCCccEEEecCCC
Confidence 9887 44899999999754
|
CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.13 Score=63.25 Aligned_cols=93 Identities=23% Similarity=0.439 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCC-CCCCcCcccCCCCC---CCCCC--CccCCCCCHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~-g~~~~yy~~~~~~~---~~~w~--~~~ln~~~p~v~~~l~~~ 394 (1351)
++++||+.+|++|++|++-+.+ +...... ....|+ +....|+..++.+. ...|. +..+|+.||++++++.+.
T Consensus 84 d~~~~~~~l~~~G~~~~~~~~P-~v~~~~~-~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 161 (441)
T PF01055_consen 84 DPKQMIDELHDQGIKVVLWVHP-FVSNDSP-DYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQ 161 (441)
T ss_dssp THHHHHHHHHHTT-EEEEEEES-EEETTTT-B-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHH
T ss_pred chHHHHHhHhhCCcEEEEEeec-ccCCCCC-cchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHH
Confidence 6789999999999999998887 3333321 000110 01122343333331 11254 357899999999999999
Q ss_pred HHHHHHHcCCCcccccccccc
Q psy9001 395 LRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 395 l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
++..++.+|||||-+|.....
T Consensus 162 ~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 162 LKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp HHHHHTTST-SEEEEESTTTB
T ss_pred HHHHHhccCCceEEeecCCcc
Confidence 999999889999999985543
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A .... |
| >COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.95 Score=59.43 Aligned_cols=95 Identities=18% Similarity=0.291 Sum_probs=62.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCC---CCCC--CccCCCCCHHHH
Q psy9001 314 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVL 388 (1351)
Q Consensus 314 ~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~---~~w~--~~~ln~~~p~v~ 388 (1351)
.+|-.+ |+||+.+|++||++|+=+.+.=..+. + ..-.+....||..++.|.. ..|. +.-+||.||++|
T Consensus 318 ~~FP~p---k~mi~~l~~~Gikl~~~i~P~i~~d~-~---~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r 390 (772)
T COG1501 318 DRFPDP---KQMIAELHEKGIKLIVIINPYIKQDS-P---LFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAR 390 (772)
T ss_pred ccCCCH---HHHHHHHHhcCceEEEEeccccccCC-c---hHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHH
Confidence 445444 49999999999999976665433322 1 1111222346665555443 3454 467899999999
Q ss_pred HHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 389 RFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 389 ~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
++..+..+.-+.++|||||-.|...-.
T Consensus 391 ~Ww~~~~~~~l~d~Gv~g~W~D~nEp~ 417 (772)
T COG1501 391 EWWASDKKKNLLDLGVDGFWNDMNEPE 417 (772)
T ss_pred HHHHHHHHhHHHhcCccEEEccCCCCc
Confidence 999965544344499999999987655
|
|
| >cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain | Back alignment and domain information |
|---|
Probab=90.02 E-value=1 Score=43.25 Aligned_cols=54 Identities=19% Similarity=0.421 Sum_probs=37.6
Q ss_pred EEEEEEEe---ecCCCCcc-ccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCcee
Q psy9001 74 MHVVCAAG---DFNNWNRE-EFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLL 133 (1351)
Q Consensus 74 A~~V~LvG---DFN~Wd~~-~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~ 133 (1351)
-++|.|+| +|++|+.. ..+|...+.+.|++.+.- +.+. .-.|||.+...+|...
T Consensus 14 ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l-~~~~-----~~eYKy~~~~~~~~~~ 71 (95)
T cd05808 14 GQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDL-PAGT-----AIEYKYIKKDGSGTVT 71 (95)
T ss_pred CCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEe-CCCC-----eEEEEEEEECCCCcEE
Confidence 46889999 58899964 579988778999887742 2221 2589998765555433
|
This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo |
| >cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes | Back alignment and domain information |
|---|
Probab=89.92 E-value=1.5 Score=52.86 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy9001 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1029 yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l 1108 (1351)
||..+ ++||..||++|++|++..-++ .-...+++.|+-+++++
T Consensus 62 ~~~~~--~~~~~~A~~~~v~v~~~~~~~-----------------------------------~~~l~~~~~R~~fi~si 104 (358)
T cd02875 62 FGDID--DELLCYAHSKGVRLVLKGDVP-----------------------------------LEQISNPTYRTQWIQQK 104 (358)
T ss_pred cCCCC--HHHHHHHHHcCCEEEEECccC-----------------------------------HHHcCCHHHHHHHHHHH
Confidence 35544 589999999999999751000 00245789999899999
Q ss_pred HHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChh-HHHHHHHHHHHHHhhCCC
Q psy9001 1109 RWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD-ALIYLMVANKFLHDKYPE 1172 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~-~~~fl~~~~~~l~~~~Pd 1172 (1351)
.-++++||+||+-+|-=.-... ...+.+ -..|++++++++++..+.
T Consensus 105 v~~~~~~gfDGIdIDwE~p~~~------------------~~~d~~~~t~llkelr~~l~~~~~~ 151 (358)
T cd02875 105 VELAKSQFMDGINIDIEQPITK------------------GSPEYYALTELVKETTKAFKKENPG 151 (358)
T ss_pred HHHHHHhCCCeEEEcccCCCCC------------------CcchHHHHHHHHHHHHHHHhhcCCC
Confidence 8899999999999996531100 011223 357899999999876554
|
Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase. |
| >cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins | Back alignment and domain information |
|---|
Probab=89.63 E-value=1.1 Score=51.22 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1110 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~y 1110 (1351)
+.+++++.|+.+|++|+||++=+-.+|.+... ....+++-|+.+.+++.-
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~------------------------------~~~~~~~~~~~fa~~l~~ 98 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF------------------------------ANNLSDAAAKAYAKAIVD 98 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc------------------------------cccCCHHHHHHHHHHHHH
Confidence 47899999999999999999987554433210 012245667777778888
Q ss_pred HHHHhCCCeEEEcCcc
Q psy9001 1111 YLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1111 Wl~eygVDGFRfD~a~ 1126 (1351)
++++||+||+=+|--.
T Consensus 99 ~v~~yglDGiDiD~E~ 114 (255)
T cd06542 99 TVDKYGLDGVDFDDEY 114 (255)
T ss_pred HHHHhCCCceEEeeee
Confidence 8899999999999643
|
The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B. |
| >PF13200 DUF4015: Putative glycosyl hydrolase domain | Back alignment and domain information |
|---|
Probab=89.49 E-value=2.3 Score=50.19 Aligned_cols=118 Identities=23% Similarity=0.257 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCC----CCCCCCCCHHHHHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD----SRLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~----~~dlN~~np~Vr~~lid~ 1107 (1351)
+.|+++|+++||++||.+|-=+|. .++..- .. .++.|-.....| ..|. ..=+|-.+++|++|+++.
T Consensus 60 i~D~~~l~~~l~e~gIY~IARIv~---FkD~~l--a~---~~pe~av~~~~G--~~w~d~~~~~WvnP~~~evw~Y~i~I 129 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYPIARIVV---FKDPVL--AE---AHPEWAVKTKDG--SVWRDNEGEAWVNPYSKEVWDYNIDI 129 (316)
T ss_pred ccCHHHHHHHHHHCCCEEEEEEEE---ecChHH--hh---hChhhEEECCCC--CcccCCCCCccCCCCCHHHHHHHHHH
Confidence 578999999999999999999874 222210 00 111221112222 1221 113788899999999999
Q ss_pred HHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcC----ChhH-HHHHHHHHHHHHhh
Q psy9001 1108 LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV----DTDA-LIYLMVANKFLHDK 1169 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~----d~~~-~~fl~~~~~~l~~~ 1169 (1351)
++-.++ .|||..-||-+..-- .+.... -.|+... -.++ ..|++.+++.|++.
T Consensus 130 A~Eaa~-~GFdEIqfDYIRFP~---~~~~~~------l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~ 186 (316)
T PF13200_consen 130 AKEAAK-LGFDEIQFDYIRFPD---EGRLSG------LDYSENDTEESRVDAITDFLAYAREELHPY 186 (316)
T ss_pred HHHHHH-cCCCEEEeeeeecCC---CCcccc------cccCCCCCcchHHHHHHHHHHHHHHHHhHc
Confidence 999876 699999999886331 000000 0111111 1233 45888899888765
|
|
| >TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type | Back alignment and domain information |
|---|
Probab=88.92 E-value=2.4 Score=50.05 Aligned_cols=85 Identities=16% Similarity=0.337 Sum_probs=59.4
Q ss_pred CCCCCC-CCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHH
Q psy9001 370 GTHPLW-DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMV 448 (1351)
Q Consensus 370 ~~~~~w-~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~ 448 (1351)
+..++| +...+|+.+|+.+++|++-+.-.++ .|+|||=+|.+..-.+... .+.++. ....+-+.|++.
T Consensus 127 ~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~-kGfDGvfLD~lDsy~~~~~-~~~~~~---------~~~~~m~~~i~~ 195 (315)
T TIGR01370 127 NEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIA-QGFDGVYLDLIDAFEYWAE-NGDNRP---------GAAAEMIAFVCE 195 (315)
T ss_pred CCCCCCCCceeEecccHHHHHHHHHHHHHHHH-cCCCeEeeccchhhhhhcc-cCCcch---------hhHHHHHHHHHH
Confidence 456789 6678999999999999988776655 6999999998775421110 000000 001233578888
Q ss_pred HHHHHHhhCCCeEEEEE
Q psy9001 449 ANKFLHDKYPEIITIAE 465 (1351)
Q Consensus 449 ~~~~v~~~~P~~~~iaE 465 (1351)
+.+.+|+.+|++++|.-
T Consensus 196 Ia~~ar~~~P~~~II~N 212 (315)
T TIGR01370 196 IAAYARAQNPQFVIIPQ 212 (315)
T ss_pred HHHHHHHHCCCEEEEec
Confidence 88888999999999844
|
Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases. |
| >cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.6 Score=52.65 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHH
Q psy9001 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 395 (1351)
Q Consensus 316 ~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l 395 (1351)
||..+ ++||..||++|++|++..-+. .-...+++.|+-+++++
T Consensus 62 ~~~~~--~~~~~~A~~~~v~v~~~~~~~-----------------------------------~~~l~~~~~R~~fi~si 104 (358)
T cd02875 62 FGDID--DELLCYAHSKGVRLVLKGDVP-----------------------------------LEQISNPTYRTQWIQQK 104 (358)
T ss_pred cCCCC--HHHHHHHHHcCCEEEEECccC-----------------------------------HHHcCCHHHHHHHHHHH
Confidence 45544 589999999999999641000 00245789999999999
Q ss_pred HHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCch-HHHHHHHHHHHHHhhCCCe
Q psy9001 396 RWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD-ALIYLMVANKFLHDKYPEI 460 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~f~~~~~~~v~~~~P~~ 460 (1351)
.-+++++|.||+-+|--.-.. .+..+.+ -..|++++++++++..++.
T Consensus 105 v~~~~~~gfDGIdIDwE~p~~------------------~~~~d~~~~t~llkelr~~l~~~~~~~ 152 (358)
T cd02875 105 VELAKSQFMDGINIDIEQPIT------------------KGSPEYYALTELVKETTKAFKKENPGY 152 (358)
T ss_pred HHHHHHhCCCeEEEcccCCCC------------------CCcchHHHHHHHHHHHHHHHhhcCCCc
Confidence 999999999999998532110 0011222 2479999999998776543
|
Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase. |
| >cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB) | Back alignment and domain information |
|---|
Probab=88.07 E-value=0.61 Score=55.66 Aligned_cols=91 Identities=10% Similarity=-0.019 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCC---CCCCC--CCCCCCCCHHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~---~~~w~--~~dlN~~np~Vr~~lid~l 1108 (1351)
+.+.||+++|++|++|++-+.+- +..+..... .-.+....||..+..+. ...|. +.-+|+.||++++...+-+
T Consensus 65 dp~~mi~~L~~~G~k~~~~~~P~-v~~~~~~~~-y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 142 (339)
T cd06603 65 DPEKMQEKLASKGRKLVTIVDPH-IKRDDGYYV-YKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLF 142 (339)
T ss_pred CHHHHHHHHHHCCCEEEEEecCc-eecCCCCHH-HHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHH
Confidence 45889999999999999987543 222210000 00112223444333331 12342 3369999999999999999
Q ss_pred HHHHH--HhCCCeEEEcCcc
Q psy9001 1109 RWYLE--EYQFDGFRFDGVT 1126 (1351)
Q Consensus 1109 ~yWl~--eygVDGFRfD~a~ 1126 (1351)
+..+. ..++|||=+|+..
T Consensus 143 ~~~~~~~~~g~~g~w~D~~E 162 (339)
T cd06603 143 SYDKYKGSTENLYIWNDMNE 162 (339)
T ss_pred HHHhhcccCCCceEEeccCC
Confidence 98876 3689999999753
|
Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae. |
| >smart00632 Aamy_C Aamy_C domain | Back alignment and domain information |
|---|
Probab=87.61 E-value=2.1 Score=40.28 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=17.0
Q ss_pred CCcEEEEEeC-ceEEEEeCCCC
Q psy9001 529 GDKVIIFERA-GLLFAFNFNGT 549 (1351)
Q Consensus 529 ~~~Vlaf~R~-~ll~v~Nf~~~ 549 (1351)
++.+|+|.|. ..+|++|.+..
T Consensus 7 ~~~~laF~Rg~~g~VaiN~~~~ 28 (81)
T smart00632 7 GDNQIAFERGSKGFVAINRSDS 28 (81)
T ss_pred CCeEEEEECCCeEEEEEECCCC
Confidence 4459999997 78888998765
|
|
| >cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB) | Back alignment and domain information |
|---|
Probab=87.57 E-value=0.54 Score=56.14 Aligned_cols=89 Identities=9% Similarity=0.020 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCC---CCCCCC--ccCCCCCHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~---~~~w~~--~~ln~~~p~v~~~l~~~ 394 (1351)
+.++||+++|++|++|++-+.+--..... ...| .+....||..+..+. ...|.+ ..+|+.||+++++..+-
T Consensus 65 dp~~mi~~L~~~G~k~~~~~~P~v~~~~~---~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 141 (339)
T cd06603 65 DPEKMQEKLASKGRKLVTIVDPHIKRDDG---YYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASL 141 (339)
T ss_pred CHHHHHHHHHHCCCEEEEEecCceecCCC---CHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHH
Confidence 45889999999999999987644322110 0011 112233444333321 123433 46899999999999999
Q ss_pred HHHHHH--HcCCCccccccc
Q psy9001 395 LRWYLD--EYQFDGFRFDGV 412 (1351)
Q Consensus 395 l~~W~~--e~~vDGfR~D~a 412 (1351)
++..+. ..+||||-+|+.
T Consensus 142 ~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 142 FSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred HHHHhhcccCCCceEEeccC
Confidence 998876 368999999864
|
Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae. |
| >PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=87.27 E-value=7 Score=44.44 Aligned_cols=107 Identities=18% Similarity=0.158 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD-SRLFNYSEIEVLRFLLSNLRW 1110 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~-~~dlN~~np~Vr~~lid~l~y 1110 (1351)
.+.|+++|+.|+++||+||||+--. +.|. ..+.........+++.+.+++
T Consensus 61 ~~~ld~~v~~a~~~gi~vild~h~~-----------------------------~~w~~~~~~~~~~~~~~~~~~~~~~~ 111 (281)
T PF00150_consen 61 LARLDRIVDAAQAYGIYVILDLHNA-----------------------------PGWANGGDGYGNNDTAQAWFKSFWRA 111 (281)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEES-----------------------------TTCSSSTSTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccC-----------------------------ccccccccccccchhhHHHHHhhhhh
Confidence 7899999999999999999997332 1111 112333444567777788888
Q ss_pred HHHHh----CCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEcc
Q psy9001 1111 YLEEY----QFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAED 1179 (1351)
Q Consensus 1111 Wl~ey----gVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~ 1179 (1351)
+++.| .|-|| +.+......... ..| .......-..+.+.+.+.||+..|+.+++.+.
T Consensus 112 la~~y~~~~~v~~~--el~NEP~~~~~~---~~w-------~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 112 LAKRYKDNPPVVGW--ELWNEPNGGNDD---ANW-------NAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHHHTTTTTTEEE--ESSSSGCSTTST---TTT-------SHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred hccccCCCCcEEEE--EecCCccccCCc---ccc-------ccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 88888 33333 333322100000 000 00011223567899999999999998887774
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A .... |
| >cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end | Back alignment and domain information |
|---|
Probab=86.67 E-value=1.5 Score=52.35 Aligned_cols=68 Identities=16% Similarity=0.107 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHH
Q psy9001 322 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDE 401 (1351)
Q Consensus 322 fk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e 401 (1351)
.++||+++|++|++||+-+.+-= .. |. ...+.+.-.|+.||++|++..+..+.+.+
T Consensus 66 p~~mv~~L~~~G~klv~~i~P~i-~~----------g~------------~~~~~~~~pDftnp~ar~wW~~~~~~l~~- 121 (332)
T cd06601 66 PKEMFDNLHNKGLKCSTNITPVI-SY----------GG------------GLGSPGLYPDLGRPDVREWWGNQYKYLFD- 121 (332)
T ss_pred HHHHHHHHHHCCCeEEEEecCce-ec----------Cc------------cCCCCceeeCCCCHHHHHHHHHHHHHHHh-
Confidence 47899999999999988765321 10 10 00112345789999999999888888776
Q ss_pred cCCCcccccccc
Q psy9001 402 YQFDGFRFDGVT 413 (1351)
Q Consensus 402 ~~vDGfR~D~a~ 413 (1351)
.|||||-.|+..
T Consensus 122 ~Gv~~~W~DmnE 133 (332)
T cd06601 122 IGLEFVWQDMTT 133 (332)
T ss_pred CCCceeecCCCC
Confidence 799999999754
|
GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes. |
| >PLN02763 hydrolase, hydrolyzing O-glycosyl compounds | Back alignment and domain information |
|---|
Probab=86.48 E-value=1.1 Score=59.71 Aligned_cols=89 Identities=13% Similarity=0.243 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCCC---CCCCC--ccCCCCCHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWDS--RLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~~---~~w~~--~~ln~~~p~v~~~l~~~ 394 (1351)
+.++||+++|++|+++|+=+.+ +...+ .+...+ .|....+|.....+.. ..|.+ .-.||.||++|++..+.
T Consensus 242 dP~~mv~~Lh~~G~kvv~iidP-gI~~d--~gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~ 318 (978)
T PLN02763 242 DPKGLADDLHSIGFKAIWMLDP-GIKAE--EGYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANL 318 (978)
T ss_pred CHHHHHHHHHHCCCEEEEEEcC-CCccC--CCCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHH
Confidence 4589999999999999764433 22221 111112 2222344444333321 24543 34699999999999999
Q ss_pred HHHHHHHcCCCcccccccc
Q psy9001 395 LRWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 395 l~~W~~e~~vDGfR~D~a~ 413 (1351)
++.+++ .|||||-+|+-.
T Consensus 319 ~k~l~d-~GVDG~W~DmnE 336 (978)
T PLN02763 319 VKDFVS-NGVDGIWNDMNE 336 (978)
T ss_pred HHHHhc-CCCcEEEccCCC
Confidence 998887 899999999754
|
|
| >PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=86.32 E-value=6 Score=47.19 Aligned_cols=167 Identities=19% Similarity=0.149 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHH
Q psy9001 317 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 396 (1351)
Q Consensus 317 G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~ 396 (1351)
-+.+...+|.++++++||+|+||+=|..+-.+. | .......|.+..++-=...|.+|-.++|.
T Consensus 55 ~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDP--------g---------~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~ 117 (332)
T PF07745_consen 55 NDLEDVIALAKRAKAAGMKVLLDFHYSDFWADP--------G---------KQNKPAAWANLSFDQLAKAVYDYTKDVLQ 117 (332)
T ss_dssp TSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BT--------T---------B-B--TTCTSSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCeEEEeecccCCCCCC--------C---------CCCCCccCCCCCHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999888765541 0 01112346544333334567777777777
Q ss_pred HHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchH-HHHHHHHHHHHHhhCCCeEEEEEcCCCCCC---
Q psy9001 397 WYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDA-LIYLMVANKFLHDKYPEIITIAEDVSGMPA--- 472 (1351)
Q Consensus 397 ~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~--- 472 (1351)
.... .|| -.|.+..= .....++.+.. +...+.+. ..+++...++||+..|++.++-=...+...
T Consensus 118 ~l~~-~G~---~pd~VQVG----NEin~Gmlwp~----g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~ 185 (332)
T PF07745_consen 118 ALKA-AGV---TPDMVQVG----NEINNGMLWPD----GKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLY 185 (332)
T ss_dssp HHHH-TT-----ESEEEES----SSGGGESTBTT----TCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHH
T ss_pred HHHH-CCC---CccEEEeC----ccccccccCcC----CCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHH
Confidence 7655 454 45554321 00011111110 11122222 357777789999999987654332221111
Q ss_pred --cccccccCCCCCCCcCC-cCCCCCCCcHHHHHHHHHHhhhcc
Q psy9001 473 --SCRPVTEGGTGFDYRLE-IRPDMSDMTVGTFDAAMNTTEERF 513 (1351)
Q Consensus 473 --~~~~~~~gg~gfd~~~~-~~~d~~~~sl~~f~k~L~~Lr~~~ 513 (1351)
.+......|..||+-=- +.+. ...++..+...|..|++++
T Consensus 186 ~~~f~~l~~~g~d~DviGlSyYP~-w~~~l~~l~~~l~~l~~ry 228 (332)
T PF07745_consen 186 RWFFDNLKAAGVDFDVIGLSYYPF-WHGTLEDLKNNLNDLASRY 228 (332)
T ss_dssp HHHHHHHHHTTGG-SEEEEEE-ST-TST-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceEEEecCCC-CcchHHHHHHHHHHHHHHh
Confidence 11111112344442111 1111 2337888888888887766
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A .... |
| >cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins | Back alignment and domain information |
|---|
Probab=85.62 E-value=2.2 Score=48.63 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 397 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~ 397 (1351)
+.+++++.|+.+|++|+||++=+-.+|.+.. | .....++-++.+.+++.-
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~-------~-----------------------~~~~~~~~~~~fa~~l~~ 98 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAG-------F-----------------------ANNLSDAAAKAYAKAIVD 98 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCC-------c-----------------------cccCCHHHHHHHHHHHHH
Confidence 4688999999999999999987755553321 0 012245667777888888
Q ss_pred HHHHcCCCcccccc
Q psy9001 398 YLDEYQFDGFRFDG 411 (1351)
Q Consensus 398 W~~e~~vDGfR~D~ 411 (1351)
++++||+||+-+|-
T Consensus 99 ~v~~yglDGiDiD~ 112 (255)
T cd06542 99 TVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHhCCCceEEee
Confidence 88999999999985
|
The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B. |
| >PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=85.61 E-value=1.4 Score=42.57 Aligned_cols=58 Identities=17% Similarity=0.383 Sum_probs=42.0
Q ss_pred eeEEE-------EEEEEEEeecC---CCCc-cccceeec----CCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCce
Q psy9001 69 GLLCF-------MHVVCAAGDFN---NWNR-EEFAYKKL----DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHL 132 (1351)
Q Consensus 69 gv~F~-------A~~V~LvGDFN---~Wd~-~~~~M~k~----~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~ 132 (1351)
.|+|+ -++|.|+|+.. +|+. +..+|... ...+|++.|. +..+. --.|||.+.+.+|..
T Consensus 3 ~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~-lp~~~-----~~eYKy~i~~~~g~~ 75 (96)
T PF00686_consen 3 SVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVD-LPAGT-----PFEYKYVIKDADGNV 75 (96)
T ss_dssp EEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEE-EETTS-----EEEEEEEEEETTSEE
T ss_pred EEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEE-CcCCC-----EEEEEEEEEeCCCCE
Confidence 46676 58999999876 7997 56899874 4589999983 22231 247999998777643
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A .... |
| >COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.84 E-value=1.3 Score=58.31 Aligned_cols=89 Identities=18% Similarity=0.280 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCC---CC--CCCCCCCCHHHHHHHHHHHHH
Q psy9001 1036 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL---WD--SRLFNYSEIEVLRFLLSNLRW 1110 (1351)
Q Consensus 1036 K~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~---w~--~~dlN~~np~Vr~~lid~l~y 1110 (1351)
|.||+.+|++||++|.=+.+.=..+.. + .-......||..+++|.... |. +.-+||.||++|+...+..+.
T Consensus 324 k~mi~~l~~~Gikl~~~i~P~i~~d~~---~-~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~ 399 (772)
T COG1501 324 KQMIAELHEKGIKLIVIINPYIKQDSP---L-FKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKK 399 (772)
T ss_pred HHHHHHHHhcCceEEEEeccccccCCc---h-HHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHh
Confidence 399999999999999877554222211 0 00112234665555554333 32 346899999999999965544
Q ss_pred HHHHhCCCeEEEcCcccc
Q psy9001 1111 YLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1111 Wl~eygVDGFRfD~a~~m 1128 (1351)
-+.++|||||=.|...-.
T Consensus 400 ~l~d~Gv~g~W~D~nEp~ 417 (772)
T COG1501 400 NLLDLGVDGFWNDMNEPE 417 (772)
T ss_pred HHHhcCccEEEccCCCCc
Confidence 445579999999988655
|
|
| >PLN02635 disproportionating enzyme | Back alignment and domain information |
|---|
Probab=84.74 E-value=4.7 Score=51.01 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeec--ccccCCcc--ccCcC---------CCCCCCccccCCCCCCCCCCCCCCCCCCCH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVH--SHASKNVL--DGLNE---------FDGTQACFFHDGPRGTHPLWDSRLFNYSEI 1098 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~--NHts~~~~--~~l~~---------~dg~~~~yf~~~~~g~~~~w~~~dlN~~np 1098 (1351)
-++++++-+.||++||++|.|+.+ +|-|.+.- ..+-. --|.++++|... -.+|+..-+|...-
T Consensus 223 ~~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~----GQ~WG~P~y~w~~l 298 (538)
T PLN02635 223 QRQWQAVRSYANEKGISIIGDMPIYVGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSET----GQLWGSPLYDWKAM 298 (538)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeecccCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCcc----cccCCCcCcCHHHH
Confidence 478999999999999999999984 55554430 00111 125566777532 23566554544321
Q ss_pred H--HHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEE
Q psy9001 1099 E--VLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 1176 (1351)
Q Consensus 1099 ~--Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilI 1176 (1351)
+ --+..++-+++=++ .+|..|+|-+.-+.+. .-+..+ ......|....-+..+++. .|.+..+++.+|
T Consensus 299 ~~~gy~ww~~Rlr~~~~--~~d~lRIDHf~Gf~r~-W~IP~g---~~ta~~G~wv~~Pg~~l~~----~l~~~~~~~~vI 368 (538)
T PLN02635 299 AKDGYSWWAGRMRRALE--LYDEFRIDHFRGFAGY-WAVPAD---AKTAMNGRWKVGPGKSFFD----AIKKAVGKIDII 368 (538)
T ss_pred HhcCcHHHHHHHHHHHH--hCCeEEecchhhhhee-eeccCC---CCCCCCCeeeeCCHHHHHH----HHHHHcCCCCEE
Confidence 0 01123444444444 7899999987644221 000000 0011112223344555553 455666789999
Q ss_pred EccCC
Q psy9001 1177 AEDVS 1181 (1351)
Q Consensus 1177 aE~~~ 1181 (1351)
||+..
T Consensus 369 aEDLG 373 (538)
T PLN02635 369 AEDLG 373 (538)
T ss_pred EeeCC
Confidence 99864
|
|
| >PLN02763 hydrolase, hydrolyzing O-glycosyl compounds | Back alignment and domain information |
|---|
Probab=84.35 E-value=1.7 Score=58.04 Aligned_cols=89 Identities=13% Similarity=0.241 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCC-CCCCCccccCCCCCC---CCCCCC--CCCCCCCHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~-dg~~~~yf~~~~~g~---~~~w~~--~dlN~~np~Vr~~lid~ 1107 (1351)
+.++||+.+|++|++||+=+.+ +...+ .+...+ .+....+|....+|. -..|.+ .-.||.||++|++..+.
T Consensus 242 dP~~mv~~Lh~~G~kvv~iidP-gI~~d--~gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~ 318 (978)
T PLN02763 242 DPKGLADDLHSIGFKAIWMLDP-GIKAE--EGYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANL 318 (978)
T ss_pred CHHHHHHHHHHCCCEEEEEEcC-CCccC--CCCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHH
Confidence 3579999999999999774422 22221 111111 112223443333332 123432 24799999999999999
Q ss_pred HHHHHHHhCCCeEEEcCcc
Q psy9001 1108 LRWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~ 1126 (1351)
++.+++ .|||||=+|+-.
T Consensus 319 ~k~l~d-~GVDG~W~DmnE 336 (978)
T PLN02763 319 VKDFVS-NGVDGIWNDMNE 336 (978)
T ss_pred HHHHhc-CCCcEEEccCCC
Confidence 998877 699999999854
|
|
| >cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end | Back alignment and domain information |
|---|
Probab=84.04 E-value=2.4 Score=50.63 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy9001 1028 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1028 ~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~ 1107 (1351)
+|-.+ ++||+++|++|++|++-+.+- ... + ....+.+.-.|+.||++|++-.+.
T Consensus 62 ~FPdp---~~mv~~L~~~G~klv~~i~P~-i~~----------g------------~~~~~~~~~pDftnp~ar~wW~~~ 115 (332)
T cd06601 62 GFPNP---KEMFDNLHNKGLKCSTNITPV-ISY----------G------------GGLGSPGLYPDLGRPDVREWWGNQ 115 (332)
T ss_pred CCCCH---HHHHHHHHHCCCeEEEEecCc-eec----------C------------ccCCCCceeeCCCCHHHHHHHHHH
Confidence 45444 689999999999999886422 110 0 000111234789999999998888
Q ss_pred HHHHHHHhCCCeEEEcCcc
Q psy9001 1108 LRWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~ 1126 (1351)
++.+.+ .|||||=.|+..
T Consensus 116 ~~~l~~-~Gv~~~W~DmnE 133 (332)
T cd06601 116 YKYLFD-IGLEFVWQDMTT 133 (332)
T ss_pred HHHHHh-CCCceeecCCCC
Confidence 888776 599999999764
|
GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes. |
| >PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants | Back alignment and domain information |
|---|
Probab=83.75 E-value=3.9 Score=43.98 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhcccccccCCcc-----eEee----cCCCcEEEEEeC--------------ceEEEEeCCCC
Q psy9001 499 VGTFDAAMNTTEERFKWLSADPGY-----VSTK----HEGDKVIIFERA--------------GLLFAFNFNGT 549 (1351)
Q Consensus 499 l~~f~k~L~~Lr~~~~~L~~g~~~-----~~~~----~~~~~Vlaf~R~--------------~ll~v~Nf~~~ 549 (1351)
..+++++|++||+.+|.++-+..- +.+. +....||++.=. .||||||-+|+
T Consensus 43 a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~ 116 (168)
T PF11852_consen 43 ASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPE 116 (168)
T ss_dssp HHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS
T ss_pred HHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCC
Confidence 489999999999999998755211 1111 123556666532 49999999998
|
Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A. |
| >PRK14582 pgaB outer membrane N-deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=82.70 E-value=10 Score=49.15 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=36.5
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 371 THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 371 ~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
.+++|... |+-.+|+||++|.+...-.+..+.|||.-||-=..+
T Consensus 427 ~~~~~~~r-l~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~l 470 (671)
T PRK14582 427 IHPEQYRR-LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDAVL 470 (671)
T ss_pred cCCCCCcC-CCCCCHHHHHHHHHHHHHHHHhCCCceEEecccccc
Confidence 45677544 999999999999999999999899999988754333
|
|
| >PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO | Back alignment and domain information |
|---|
Probab=81.77 E-value=1.1 Score=42.03 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=17.6
Q ss_pred CCcEEEEEeC----ceEEEEeCCCC
Q psy9001 529 GDKVIIFERA----GLLFAFNFNGT 549 (1351)
Q Consensus 529 ~~~Vlaf~R~----~ll~v~Nf~~~ 549 (1351)
.+.|++|.|. .++||+|.+..
T Consensus 8 ~~gvYvYfR~~~~~tVmVilN~n~~ 32 (78)
T PF10438_consen 8 QDGVYVYFRYYDGKTVMVILNKNDK 32 (78)
T ss_dssp BTTEEEEEEEESSEEEEEEEE-SSS
T ss_pred cCCEEEEEEEcCCCEEEEEEcCCCC
Confidence 5679999996 89999999887
|
Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B. |
| >PRK14508 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.44 E-value=6.3 Score=49.58 Aligned_cols=139 Identities=19% Similarity=0.238 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecc--cccCCc---cccC--cCC------CCCCCccccCCCCCCCCCCCCCCCCCCCH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHS--HASKNV---LDGL--NEF------DGTQACFFHDGPRGTHPLWDSRLFNYSEI 1098 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~N--Hts~~~---~~~l--~~~------dg~~~~yf~~~~~g~~~~w~~~dlN~~np 1098 (1351)
-++++++.+.||++||++|.|+.+- +-|.+. .+-+ ..- -|.++++|... -.+|+...+|...-
T Consensus 197 ~~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~lF~l~~~~~p~~vaGaPPD~Fs~~----GQ~WG~P~y~w~~l 272 (497)
T PRK14508 197 FRQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPELFKLDEDGKPTVVAGVPPDYFSET----GQLWGNPVYNWDAL 272 (497)
T ss_pred HHHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhhhcCCCCCCcceeeeCCCCCCCcc----cCcCCCCCcCHHHH
Confidence 4788999999999999999999874 323221 0101 111 35556666432 23566555544321
Q ss_pred HH--HHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEE
Q psy9001 1099 EV--LRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 1176 (1351)
Q Consensus 1099 ~V--r~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilI 1176 (1351)
+- -+..++-+++=++ .+|.+|+|-+.-+.+. .-+..+. .....|.....+..+++..+..++ +++.+|
T Consensus 273 ~~~gy~ww~~rlr~~~~--~~~~lRIDH~~Gf~r~-W~IP~~~---~~a~~G~~v~~p~~~l~~~l~~e~----~~~~vi 342 (497)
T PRK14508 273 RKDGYRWWIERLRRSFK--LYDIVRIDHFRGFEAY-WEIPAGE---KTAINGRWVPGPGKDLFEAVKEEL----GDLPII 342 (497)
T ss_pred HhcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-eeecCCC---CCCCCCeeecCCHHHHHHHHHHHh----CCCCEE
Confidence 11 1124455555444 7899999987654321 0011100 001112222233445555444443 789999
Q ss_pred EccCCCCC
Q psy9001 1177 AEDVSGMP 1184 (1351)
Q Consensus 1177 aE~~~~~p 1184 (1351)
||+....|
T Consensus 343 gEDLG~vp 350 (497)
T PRK14508 343 AEDLGVIT 350 (497)
T ss_pred EeECCCCC
Confidence 99874443
|
|
| >cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas | Back alignment and domain information |
|---|
Probab=80.97 E-value=4.8 Score=45.97 Aligned_cols=87 Identities=16% Similarity=0.265 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 1111 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yW 1111 (1351)
..++..++++||++|++|++=|- ++... . | .--..+++.|+.+++++.-+
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~--------------~-~--------------~~~~~~~~~r~~fi~~lv~~ 94 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP--------------E-F--------------TAALNDPAKRKALVDKIINY 94 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC--------------c-c--------------hhhhcCHHHHHHHHHHHHHH
Confidence 46789999999999999998542 21110 0 0 01235788999999999999
Q ss_pred HHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhh
Q psy9001 1112 LEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDK 1169 (1351)
Q Consensus 1112 l~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~ 1169 (1351)
+++|++||.-+|--.... ....-..|++++++.+++.
T Consensus 95 ~~~~~~DGIdiDwE~~~~---------------------~~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 95 VVSYNLDGIDVDLEGPDV---------------------TFGDYLVFIRALYAALKKE 131 (253)
T ss_pred HHHhCCCceeEEeeccCc---------------------cHhHHHHHHHHHHHHHhhc
Confidence 999999999999753110 0122456888899888764
|
|
| >COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.82 E-value=14 Score=42.75 Aligned_cols=165 Identities=16% Similarity=0.112 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHH
Q psy9001 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYL 399 (1351)
Q Consensus 320 ~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~ 399 (1351)
+-.-++-++|.+.||+|++|+-|.-.-.+. ........|....++--...|.+|-..++....
T Consensus 104 ~k~ieiakRAk~~GmKVl~dFHYSDfwaDP-----------------akQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~ 166 (403)
T COG3867 104 KKAIEIAKRAKNLGMKVLLDFHYSDFWADP-----------------AKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMK 166 (403)
T ss_pred HHHHHHHHHHHhcCcEEEeeccchhhccCh-----------------hhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 334455667788999999999765432220 001122346533333335667777778888877
Q ss_pred HHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHH-HHHHHHHHHHHhhCCCeEEEEEc-CCCCCCccccc
Q psy9001 400 DEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDAL-IYLMVANKFLHDKYPEIITIAED-VSGMPASCRPV 477 (1351)
Q Consensus 400 ~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~f~~~~~~~v~~~~P~~~~iaE~-~~~~p~~~~~~ 477 (1351)
+| || -.|++..= .....+|.+...+ ..+.+.+ ..+.+...+||+..|++.++--- ....+..++-+
T Consensus 167 ~e-Gi---~pdmVQVG----NEtn~gflwp~Ge----~~~f~k~a~L~n~g~~avrev~p~ikv~lHla~g~~n~~y~~~ 234 (403)
T COG3867 167 KE-GI---LPDMVQVG----NETNGGFLWPDGE----GRNFDKMAALLNAGIRAVREVSPTIKVALHLAEGENNSLYRWI 234 (403)
T ss_pred Hc-CC---CccceEec----cccCCceeccCCC----CcChHHHHHHHHHHhhhhhhcCCCceEEEEecCCCCCchhhHH
Confidence 75 44 45554421 1112223211111 0122332 45566677888889986543221 13334444433
Q ss_pred ccC----CCCCCCcCCcCCCCCCCcHHHHHHHHHHhhhcc
Q psy9001 478 TEG----GTGFDYRLEIRPDMSDMTVGTFDAAMNTTEERF 513 (1351)
Q Consensus 478 ~~g----g~gfd~~~~~~~d~~~~sl~~f~k~L~~Lr~~~ 513 (1351)
..+ ...||---.-+-..++++|.+....|..+-.++
T Consensus 235 fd~ltk~nvdfDVig~SyYpyWhgtl~nL~~nl~dia~rY 274 (403)
T COG3867 235 FDELTKRNVDFDVIGSSYYPYWHGTLNNLTTNLNDIASRY 274 (403)
T ss_pred HHHHHHcCCCceEEeeeccccccCcHHHHHhHHHHHHHHh
Confidence 211 223321111111125668888888887775544
|
|
| >cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD) | Back alignment and domain information |
|---|
Probab=80.70 E-value=5.8 Score=46.87 Aligned_cols=64 Identities=19% Similarity=0.328 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy9001 1030 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 1109 (1351)
Q Consensus 1030 Gt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~ 1109 (1351)
.+.+++++-|++||++|++|||=+ +.. .+ .....++.-|+.+.+++.
T Consensus 57 ~~~~~~~~~i~~~q~~G~KVllSi-----GG~--------~~--------------------~~~~~~~~~~~~fa~sl~ 103 (312)
T cd02871 57 YSPAEFKADIKALQAKGKKVLISI-----GGA--------NG--------------------HVDLNHTAQEDNFVDSIV 103 (312)
T ss_pred CChHHHHHHHHHHHHCCCEEEEEE-----eCC--------CC--------------------ccccCCHHHHHHHHHHHH
Confidence 356889999999999999999875 100 00 012345678889999999
Q ss_pred HHHHHhCCCeEEEcCcc
Q psy9001 1110 WYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1110 yWl~eygVDGFRfD~a~ 1126 (1351)
-++++|++||+-||--.
T Consensus 104 ~~~~~~g~DGiDiD~E~ 120 (312)
T cd02871 104 AIIKEYGFDGLDIDLES 120 (312)
T ss_pred HHHHHhCCCeEEEeccc
Confidence 99999999999999754
|
ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1351 | ||||
| 3amk_A | 702 | Structure Of The Starch Branching Enzyme I (Bei) Fr | 5e-65 | ||
| 3amk_A | 702 | Structure Of The Starch Branching Enzyme I (Bei) Fr | 5e-64 | ||
| 3aml_A | 755 | Structure Of The Starch Branching Enzyme I (Bei) Fr | 2e-64 | ||
| 3aml_A | 755 | Structure Of The Starch Branching Enzyme I (Bei) Fr | 5e-64 | ||
| 3k1d_A | 722 | Crystal Structure Of Glycogen Branching Enzyme Syno | 9e-22 | ||
| 1m7x_A | 617 | The X-Ray Crystallographic Structure Of Branching E | 3e-21 | ||
| 1eha_A | 558 | Crystal Structure Of Glycosyltrehalose Trehalohydro | 4e-08 | ||
| 1eh9_A | 558 | Crystal Structure Of Sulfolobus Solfataricus Glycos | 4e-08 | ||
| 3vgg_A | 558 | Crystal Structure Of Glycosyltrehalose Trehalohydro | 5e-08 | ||
| 3vgd_A | 558 | Ctystal Structure Of Glycosyltrehalose Trehalohydro | 2e-07 | ||
| 3vge_A | 558 | Crystal Structure Of Glycosyltrehalose Trehalohydro | 2e-07 | ||
| 2bhu_A | 602 | Crystal Structure Of Deinococcus Radiodurans Maltoo | 1e-06 | ||
| 2bhy_A | 602 | Crystal Structure Of Deinococcus Radiodurans Maltoo | 3e-06 | ||
| 2vnc_A | 718 | Crystal Structure Of Glycogen Debranching Enzyme Tr | 5e-06 | ||
| 2vnc_A | 718 | Crystal Structure Of Glycogen Debranching Enzyme Tr | 3e-05 | ||
| 4gkl_A | 422 | Crystal Structure Of A Noncanonic Maltogenic Alpha- | 2e-05 | ||
| 2ya0_A | 714 | Catalytic Module Of The Multi-Modular Glycogen-Degr | 3e-05 | ||
| 2ya0_A | 714 | Catalytic Module Of The Multi-Modular Glycogen-Degr | 9e-05 | ||
| 2ya2_A | 708 | Catalytic Module Of The Multi-Modular Glycogen-Degr | 3e-05 | ||
| 2ya2_A | 708 | Catalytic Module Of The Multi-Modular Glycogen-Degr | 9e-05 | ||
| 2ya1_A | 1014 | Product Complex Of A Multi-Modular Glycogen-Degradi | 3e-05 | ||
| 2ya1_A | 1014 | Product Complex Of A Multi-Modular Glycogen-Degradi | 1e-04 | ||
| 3faw_A | 877 | Crystal Structure Of The Group B Streptococcus Pull | 5e-05 | ||
| 1j0h_A | 588 | Crystal Structure Of Bacillus Stearothermophilus Ne | 7e-05 | ||
| 1j0j_A | 588 | Crystal Structure Of Neopullulanase E357q Complex W | 7e-05 | ||
| 3m07_A | 618 | 1.4 Angstrom Resolution Crystal Structure Of Putati | 2e-04 | ||
| 1gvi_A | 588 | Thermus Maltogenic Amylase In Complex With Beta-Cd | 4e-04 | ||
| 1gvi_A | 588 | Thermus Maltogenic Amylase In Complex With Beta-Cd | 5e-04 | ||
| 1sma_A | 588 | Crystal Structure Of A Maltogenic Amylase Length = | 4e-04 | ||
| 1sma_A | 588 | Crystal Structure Of A Maltogenic Amylase Length = | 5e-04 |
| >pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L Length = 702 | Back alignment and structure |
|
| >pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L Length = 702 | Back alignment and structure |
|
| >pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L Length = 755 | Back alignment and structure |
|
| >pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L Length = 755 | Back alignment and structure |
|
| >pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym: 1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase From Mycob Tuberculosis H37rv Length = 722 | Back alignment and structure |
|
| >pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme Length = 617 | Back alignment and structure |
|
| >pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase From Sulfolobus Solfataricus Length = 558 | Back alignment and structure |
|
| >pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Glycosyltrehalose Trehalohydrolase Length = 558 | Back alignment and structure |
|
| >pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase (E283q) Complexed With Maltoheptaose Length = 558 | Back alignment and structure |
|
| >pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase (D252e) Length = 558 | Back alignment and structure |
|
| >pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase (D252s) Length = 558 | Back alignment and structure |
|
| >pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans Maltooligosyltrehalose Trehalohydrolase Length = 602 | Back alignment and structure |
|
| >pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans Maltooligosyltrehalose Trehalohydrolase In Complex With Trehalose Length = 602 | Back alignment and structure |
|
| >pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From Sulfolobus Solfataricus Length = 718 | Back alignment and structure |
|
| >pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From Sulfolobus Solfataricus Length = 718 | Back alignment and structure |
|
| >pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase Amyb From Thermotoga Neapolitana Length = 422 | Back alignment and structure |
|
| >pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading Pneumococcal Virulence Factor Spua Length = 714 | Back alignment and structure |
|
| >pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading Pneumococcal Virulence Factor Spua Length = 714 | Back alignment and structure |
|
| >pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading Pneumococcal Virulence Factor Spua In Complex With An Inhibitor Length = 708 | Back alignment and structure |
|
| >pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading Pneumococcal Virulence Factor Spua In Complex With An Inhibitor Length = 708 | Back alignment and structure |
|
| >pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading Pneumococcal Virulence Factor Spua Length = 1014 | Back alignment and structure |
|
| >pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading Pneumococcal Virulence Factor Spua Length = 1014 | Back alignment and structure |
|
| >pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase Sap Length = 877 | Back alignment and structure |
|
| >pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Neopullulanase Length = 588 | Back alignment and structure |
|
| >pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With Maltotetraose Length = 588 | Back alignment and structure |
|
| >pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative Alpha Amylase From Salmonella Typhimurium Length = 618 | Back alignment and structure |
|
| >pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd Length = 588 | Back alignment and structure |
|
| >pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd Length = 588 | Back alignment and structure |
|
| >pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase Length = 588 | Back alignment and structure |
|
| >pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase Length = 588 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 315 bits (808), Expect = 2e-92
Identities = 113/177 (63%), Positives = 135/177 (76%), Gaps = 3/177 (1%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD---GTQACFFHDGPRGTH 1085
GTPE LKYLVD+ H GL VL+DVVHSHAS NV DGLN +D T +FH G RG H
Sbjct: 247 SGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYH 306
Query: 1086 PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 1145
LWDSRLFNY+ EVLRFLLSNLR++++E+ FDGFRFDGVTSMLYH+HG +GF+G+Y E
Sbjct: 307 KLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKE 366
Query: 1146 YFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLG 1202
YF L+ D DA++Y+M+AN +H PE +AEDVSGMP CRPV EGG GFD+RL
Sbjct: 367 YFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLA 423
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 315 bits (808), Expect = 2e-92
Identities = 114/176 (64%), Positives = 135/176 (76%), Gaps = 3/176 (1%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD---GTQACFFHDGPRGTH 372
GTPE LKYLVD+ H GL VL+DVVHSHAS NV DGLN +D T +FH G RG H
Sbjct: 247 SGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYH 306
Query: 373 PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 432
LWDSRLFNY+ EVLRFLLSNLR+++DE+ FDGFRFDGVTSMLYH+HG +GF+G+Y E
Sbjct: 307 KLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKE 366
Query: 433 YFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 488
YF L+ D DA++Y+M+AN +H PE +AEDVSGMP CRPV EGG GFD+RL
Sbjct: 367 YFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRL 422
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 1e-34
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 8/143 (5%)
Query: 81 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140
G+FNNWN + +K FG W + + +G + H S+VK R+ G +DR+ W
Sbjct: 83 GEFNNWNGAKHKMEKDKFGIWSIKISH-VNGKPAIPHNSKVKFRFRHGGGAWVDRIPAWI 141
Query: 141 TYVTEPP-VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 199
Y T G Y+ W+P +++ + +P KPD +IYE+HVG+ +E + ++Y
Sbjct: 142 RYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEPEVSTYR 201
Query: 200 DFVRVVIPRIVKQG------MAI 216
+F V+PRI MAI
Sbjct: 202 EFADNVLPRIRANNYNTVQLMAI 224
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 2e-32
Identities = 52/145 (35%), Positives = 69/145 (47%), Gaps = 32/145 (22%)
Query: 502 FDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYRYCSTQ 561
FD AMN EE F +LS+ VS +E DKVI+FER L+F FNF+ +++ Y
Sbjct: 570 FDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGY------ 623
Query: 562 SYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPE---- 617
+VG + GKY+V LDSD FGG R+ + T PE
Sbjct: 624 ------------------KVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPG 665
Query: 618 ----PWNNRRNSIKLYLPTRTGLIL 638
+NNR NS K+ P RT +
Sbjct: 666 VPETNFNNRPNSFKVLSPPRTCVAY 690
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 5e-32
Identities = 53/83 (63%), Positives = 62/83 (74%)
Query: 211 KQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFW 270
+ MAIPD+WI+ LK +D W+M IV TLTNRRY EK +AYAESHDQ++VGDKTIAF
Sbjct: 421 RLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFL 480
Query: 271 LMDKEMYTHMSTLSDPSLIIDRA 293
LMDKEMYT MS L S I+R
Sbjct: 481 LMDKEMYTGMSDLQPASPTINRG 503
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 6e-16
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 830 YQYEMKRRYGLMVNFLEQLSPWATYVTEPP-VVGHAYEQRIWNPKPQDKHKWTSSKPKKP 888
++ + G +++++ W Y T G Y+ W+P +++ + +P KP
Sbjct: 122 VKFRFRHGGG---AWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKP 178
Query: 889 ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQG 925
+ +IYE+HVG+ +E + ++Y +F V+PRI
Sbjct: 179 DAPRIYEAHVGMSGEEPEVSTYREFADNVLPRIRANN 215
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 3e-15
Identities = 26/32 (81%), Positives = 28/32 (87%)
Query: 723 GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
YN VQLMAIMEH+YYASFGY VT+FFA SSR
Sbjct: 215 NYNTVQLMAIMEHSYYASFGYHVTNFFAVSSR 246
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-14
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 1214 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPE--------PWNNRRNSIKLYLP 1265
+VG + GKY+V LDSD FGG R+ + T PE +NNR NS K+ P
Sbjct: 624 KVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSP 683
Query: 1266 TRTGII 1271
RT +
Sbjct: 684 PRTCVA 689
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 5e-12
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 955 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 1009
G+FNNWN + +K FG W + + +G + H S+VK R+ G +DR
Sbjct: 83 GEFNNWNGAKHKMEKDKFGIWSIKISH-VNGKPAIPHNSKVKFRFRHGGGAWVDR 136
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 3e-06
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 685 GGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTG 723
GG+E+F+ Y K+GI+ D + EWAP+AQ+ L G
Sbjct: 46 GGLEEFSKGYLKFGINTV-DGATIYREWAPAAQEAQLIG 83
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV 77
GTPE LKYLVD+ H GL M VV
Sbjct: 247 SGTPEDLKYLVDKAHSLGLRVLMDVV 272
|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* Length = 617 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 4e-38
Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 13/176 (7%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 1087
FGT + +Y +D H AGL V+LD V H + L EFDGT + H PR G H
Sbjct: 201 FGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDD-FALAEFDGT-NLYEHSDPREGYHQD 258
Query: 1088 WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY- 1146
W++ ++NY EV FL+ N +++E + D R D V SM+Y ++ EG E+
Sbjct: 259 WNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEG------EWI 312
Query: 1147 ---FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1199
FG + +A+ +L N+ L ++ +T+AE+ + P RP GG GF Y
Sbjct: 313 PNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWY 368
|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* Length = 617 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 5e-38
Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 13/176 (7%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 374
FGT + +Y +D H AGL V+LD V H + L EFDGT + H PR G H
Sbjct: 201 FGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDD-FALAEFDGT-NLYEHSDPREGYHQD 258
Query: 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY- 433
W++ ++NY EV FL+ N ++++ + D R D V SM+Y ++ EG E+
Sbjct: 259 WNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEG------EWI 312
Query: 434 ---FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 486
FG + +A+ +L N+ L ++ +T+AE+ + P RP GG GF Y
Sbjct: 313 PNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWY 368
|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* Length = 617 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 1e-08
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 38/129 (29%)
Query: 508 TTEERFKWLSADPGYVSTKHEGDKVIIFERAG-----LLFAFNFNGTQSFTDYRYCSTQS 562
F+WL D S V+IF R ++ A NF DYR
Sbjct: 510 FDPYGFEWLVVDDKERS-------VLIFVRRDKEGNEIIVASNFTP-VPRHDYR------ 555
Query: 563 YSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR 622
G+ Q GK++ +L++D H+ G N + GTV + + R
Sbjct: 556 ------------------FGINQPGKWREILNTDSMHYHGSNAGNGGTV-HSDEIASHGR 596
Query: 623 RNSIKLYLP 631
++S+ L LP
Sbjct: 597 QHSLSLTLP 605
|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* Length = 617 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 4e-08
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 1214 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 1265
R G+ Q GK++ +L++D H+ G N + GTV + + R++S+ L LP
Sbjct: 555 RFGINQPGKWREILNTDSMHYHGSNAGNGGTV-HSDEIASHGRQHSLSLTLP 605
|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* Length = 617 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 9e-07
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 716 AQQL--YLT--GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
A QL Y G+ ++L+ I EH + S+GYQ T +A + R
Sbjct: 158 ADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRR 200
|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* Length = 617 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 7e-06
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 19/116 (16%)
Query: 77 VCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 135
V G FN W+ + + G WEL +P +G K + + +G+L +
Sbjct: 39 VSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQL-------YKYEMIDANGNLRLK 91
Query: 136 LSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLK----IYESHVG 187
P+A P A I + + + KK + IYE H+G
Sbjct: 92 SDPYAFEAQMRP--ETA--SLICGL---PEKVVQTEERKKANQFDAPISIYEVHLG 140
|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} Length = 722 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 8e-38
Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 1087
FGTP+ + LVD H+AG+ V++D V +H K+ L FDGT + H P+ G
Sbjct: 309 FGTPDDFRALVDALHQAGIGVIVDWVPAHFPKDA-WALGRFDGT-PLYEHSDPKRGEQLD 366
Query: 1088 WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY- 1146
W + +F++ EV FL++N ++L+E+ DG R D V SMLY ++ EG +
Sbjct: 367 WGTYVFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASMLYLDYSRPEG------GWT 420
Query: 1147 ---FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1199
G + +A+ +L N H P I+TIAE+ + RP GG GF
Sbjct: 421 PNVHGGRENLEAVQFLQEMNATAHKVAPGIVTIAEESTPWSGVTRPTNIGGLGFSM 476
|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} Length = 722 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 9e-38
Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 13/176 (7%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 374
FGTP+ + LVD H+AG+ V++D V +H K+ L FDGT + H P+ G
Sbjct: 309 FGTPDDFRALVDALHQAGIGVIVDWVPAHFPKDA-WALGRFDGT-PLYEHSDPKRGEQLD 366
Query: 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY- 433
W + +F++ EV FL++N ++L E+ DG R D V SMLY ++ EG +
Sbjct: 367 WGTYVFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASMLYLDYSRPEG------GWT 420
Query: 434 ---FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 486
G + +A+ +L N H P I+TIAE+ + RP GG GF
Sbjct: 421 PNVHGGRENLEAVQFLQEMNATAHKVAPGIVTIAEESTPWSGVTRPTNIGGLGFSM 476
|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} Length = 722 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 1e-08
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 38/140 (27%)
Query: 505 AMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAG-----LLFAFNFNGTQSFTDYRYCS 559
+++TT E + W+ A+ + V+ F R G L FNF G DYR
Sbjct: 614 SLDTTPEGYSWIDANDSANN-------VLSFMRYGSDGSVLACVFNFAG-AEHRDYR--- 662
Query: 560 TQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPW 619
+G+ +AG+++ VL++D + + G + G V + +PW
Sbjct: 663 ---------------------LGLPRAGRWREVLNTDATIYHGSGIGNLGGV-DATDDPW 700
Query: 620 NNRRNSIKLYLPTRTGLILT 639
+ R S L LP + L LT
Sbjct: 701 HGRPASAVLVLPPTSALWLT 720
|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} Length = 722 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-08
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 1214 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 1265
R+G+ +AG+++ VL++D + + G + G V + +PW+ R S L LP
Sbjct: 662 RLGLPRAGRWREVLNTDATIYHGSGIGNLGGV-DATDDPWHGRPASAVLVLP 712
|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} Length = 722 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 4e-07
Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 4/43 (9%)
Query: 716 AQQL--YLT--GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
A++L Y+ G+ V+L+ + EH + S+GYQVTS++A +SR
Sbjct: 266 ARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPTSR 308
|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} Length = 722 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 4e-06
Identities = 30/117 (25%), Positives = 39/117 (33%), Gaps = 18/117 (15%)
Query: 77 VCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 135
V G+FN WN E + L G WEL P P K V G + DR
Sbjct: 150 VSLIGEFNGWNGHEAPMRVLGPSGVWELFWPDFPCDGL-------YKFRVHGADGVVTDR 202
Query: 136 LSPWATYVTEPP-----VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVG 187
P+A PP V Y W + + + + YE H+G
Sbjct: 203 ADPFAFGTEVPPQTASRVTSSDYT---WGDDDWMAGRALRNPVNEA--MSTYEVHLG 254
|
| >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* Length = 602 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-24
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 1086
+G PE L LVD H+ GL V LDVV++H S N L+ + + +F D
Sbjct: 189 YGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGN---YLSSYAPS---YFTDRF---SS 239
Query: 1087 LWDSRLFNYSEIEVLRFLLSN-LRWYLEEYQFDGFRFDGVTSMLYH 1131
W +Y+E + R++ N W L +Y FDG R D M
Sbjct: 240 AWGM-GLDYAEPHMRRYVTGNARMW-LRDYHFDGLRLDATPYMTDD 283
|
| >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* Length = 602 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-24
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 373
+G PE L LVD H+ GL V LDVV++H S N L+ + + +F D
Sbjct: 189 YGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGN---YLSSYAPS---YFTDRF---SS 239
Query: 374 LWDSRLFNYSEIEVLRFLLSN-LRWYLDEYQFDGFRFDGVTSMLYH 418
W +Y+E + R++ N W L +Y FDG R D M
Sbjct: 240 AWGM-GLDYAEPHMRRYVTGNARMW-LRDYHFDGLRLDATPYMTDD 283
|
| >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* Length = 602 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 716 AQQL-YL--TGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
A++L YL G A+Q+M + +GY +F+A +
Sbjct: 147 AEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAP 188
|
| >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* Length = 602 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVVCA 79
+G PE L LVD H+ GL F+ VV
Sbjct: 189 YGRPEDLMALVDAAHRLGLGVFLDVVYN 216
|
| >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} Length = 618 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-23
Identities = 40/177 (22%), Positives = 62/177 (35%), Gaps = 39/177 (22%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG--LNEFDGTQACFFHDGPRGTHP 1086
+GTP+ K +D H GL V+LD+V +H +G L FFH
Sbjct: 199 YGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGP---EGNYLPLLAPA---FFHKER---MT 249
Query: 1087 LWDSRLFNYSEIEVLRFLLSN-LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 1145
W + Y V R+++ L W L EY DG RFD + +
Sbjct: 250 PWGN-GIAYDVDAVRRYIIEAPLYW-LTEYHLDGLRFDAIDQI----------------- 290
Query: 1146 YFGLNVDTDALIYLMVANKFLHDKYPE--IITIAEDVSGMPASCRPVTEG-GTGFDY 1199
D+ A L+ + + + + I ED + + +G F
Sbjct: 291 -----EDSSARHVLVEIAQRIREDITDRPIHLTTEDSRNIISLHPRDQDGNAPLFTA 342
|
| >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} Length = 618 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-23
Identities = 40/177 (22%), Positives = 62/177 (35%), Gaps = 39/177 (22%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG--LNEFDGTQACFFHDGPRGTHP 373
+GTP+ K +D H GL V+LD+V +H +G L FFH
Sbjct: 199 YGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGP---EGNYLPLLAPA---FFHKER---MT 249
Query: 374 LWDSRLFNYSEIEVLRFLLSN-LRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 432
W + Y V R+++ L W L EY DG RFD + +
Sbjct: 250 PWGN-GIAYDVDAVRRYIIEAPLYW-LTEYHLDGLRFDAIDQI----------------- 290
Query: 433 YFGLNVDTDALIYLMVANKFLHDKYPE--IITIAEDVSGMPASCRPVTEG-GTGFDY 486
D+ A L+ + + + + I ED + + +G F
Sbjct: 291 -----EDSSARHVLVEIAQRIREDITDRPIHLTTEDSRNIISLHPRDQDGNAPLFTA 342
|
| >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} Length = 618 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 716 AQQL-YLT--GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
+L YL G +++M + + +GY +A S
Sbjct: 157 IAKLPYLAELGVTVIEVMPVAQFGGERGWGYDGVLLYAPHSA 198
|
| >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} Length = 618 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 6e-04
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVVCA 79
+GTP+ K +D H GL + +V
Sbjct: 199 YGTPDDFKAFIDAAHGYGLSVVLDIVLN 226
|
| >3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A Length = 558 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 2e-21
Identities = 47/175 (26%), Positives = 68/175 (38%), Gaps = 38/175 (21%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 1086
+G PE + LVDE HK GL V+LDVV++H N + + +F + P
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGN---YMVKLGP----YFSQ--KYKTP 214
Query: 1087 LWDSRLFNYSE-IEVLRFLLSN-LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD 1144
+ F+ +E EV +F+L N W ++EY DGFR V +++
Sbjct: 215 WGLTFNFDDAESDEVRKFILENVEYW-IKEYNVDGFRLSAVHAII--------------- 258
Query: 1145 EYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1199
DT L +H I IAE P P + G D
Sbjct: 259 -------DTSPKHILEEIADVVHK--YNRIVIAESDLNDPRVVNPKEKCGYNIDA 304
|
| >3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A Length = 558 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 2e-21
Identities = 47/175 (26%), Positives = 67/175 (38%), Gaps = 38/175 (21%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 373
+G PE + LVDE HK GL V+LDVV++H N + + +F + P
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGN---YMVKLGP----YFSQ--KYKTP 214
Query: 374 LWDSRLFNYSE-IEVLRFLLSN-LRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD 431
+ F+ +E EV +F+L N W + EY DGFR V +++
Sbjct: 215 WGLTFNFDDAESDEVRKFILENVEYW-IKEYNVDGFRLSAVHAII--------------- 258
Query: 432 EYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 486
DT L +H I IAE P P + G D
Sbjct: 259 -------DTSPKHILEEIADVVHK--YNRIVIAESDLNDPRVVNPKEKCGYNIDA 304
|
| >3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A Length = 558 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 9e-05
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 716 AQQL-YL--TGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
++L YL G A+++M I + +GY +A +
Sbjct: 122 IRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNS 163
|
| >3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A Length = 558 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 7e-04
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVVCA 79
+G PE + LVDE HK GL + VV
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYN 191
|
| >1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* Length = 527 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 9e-12
Identities = 30/187 (16%), Positives = 45/187 (24%), Gaps = 39/187 (20%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGLNEFDGTQACFFHDGPRGTH 1085
+G+ QL+ AG+ VL DVV +H + L G D +
Sbjct: 89 YGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPN 148
Query: 1086 PLWDSRLF-------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEG 1138
D F N +V +Y GFRFD V
Sbjct: 149 DCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFV------------- 195
Query: 1139 FSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD 1198
Y N ++ D + E G +
Sbjct: 196 --RGYAPER--------------VNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQ 239
Query: 1199 YRLGQYL 1205
+ +
Sbjct: 240 QIIKDWS 246
|
| >1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* Length = 527 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 1e-11
Identities = 35/201 (17%), Positives = 52/201 (25%), Gaps = 41/201 (20%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGLNEFDGTQACFFHDGPRGTH 372
+G+ QL+ AG+ VL DVV +H + L G D +
Sbjct: 89 YGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPN 148
Query: 373 PLWDSRLF-------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEG 425
D F N +V +Y GFRFD V
Sbjct: 149 DCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFV------------- 195
Query: 426 FSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD 485
Y N ++ D + E G +
Sbjct: 196 --RGYAPER--------------VNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQ 239
Query: 486 YRLEIRPDMSDMTVGTFDAAM 506
++ D + V FD A+
Sbjct: 240 QIIKDWSDRAKCPV--FDFAL 258
|
| >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A Length = 478 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 1e-11
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 18/113 (15%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN----VLDGLNEFDGTQACFFH------ 1078
+GT + LK L H+ G+Y+++DVV +H + +D + +FH
Sbjct: 94 YGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQ 153
Query: 1079 ---DGPRGTHPLWDSRL-----FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
D + + ++ V + + Y DG R D
Sbjct: 154 NYEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRID 206
|
| >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A Length = 478 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 5e-11
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 18/113 (15%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN----VLDGLNEFDGTQACFFH------ 365
+GT + LK L H+ G+Y+++DVV +H + +D + +FH
Sbjct: 94 YGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQ 153
Query: 366 ---DGPRGTHPLWDSRL-----FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
D + + ++ V + + Y DG R D
Sbjct: 154 NYEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRID 206
|
| >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 Length = 484 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 5e-11
Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 22/115 (19%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN----VLDGLNEFDGTQACFFHDGPRGT 1084
FGT + LK L D H G+Y+++DVV H +D + +FH P
Sbjct: 94 FGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFH--PYCL 151
Query: 1085 HPLWDSRL----------------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
WD+ + +E V + + Y DG R D
Sbjct: 152 ITDWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRID 206
|
| >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 Length = 484 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 1e-10
Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 22/115 (19%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN----VLDGLNEFDGTQACFFHDGPRGT 371
FGT + LK L D H G+Y+++DVV H +D + +FH P
Sbjct: 94 FGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFH--PYCL 151
Query: 372 HPLWDSRL----------------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
WD+ + +E V + + Y DG R D
Sbjct: 152 ITDWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRID 206
|
| >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* Length = 405 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 6e-11
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 25/129 (19%)
Query: 1018 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS---KNVLDGLNEFDGTQA 1074
Y +D +G +LK L+ H G+ + D+V +H K+ F+G +
Sbjct: 58 YDIDASK----YGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTS 113
Query: 1075 ---------CFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLEEYQ 1116
D + + + ++ V R L L W +
Sbjct: 114 DGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLG 173
Query: 1117 FDGFRFDGV 1125
FD +R D
Sbjct: 174 FDAWRLDFA 182
|
| >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* Length = 405 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 8e-11
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 25/129 (19%)
Query: 305 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS---KNVLDGLNEFDGTQA 361
Y +D +G +LK L+ H G+ + D+V +H K+ F+G +
Sbjct: 58 YDIDASK----YGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTS 113
Query: 362 ---------CFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLDEYQ 403
D + + + ++ V R L L W +
Sbjct: 114 DGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLG 173
Query: 404 FDGFRFDGV 412
FD +R D
Sbjct: 174 FDAWRLDFA 182
|
| >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Length = 680 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 7e-11
Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 25/119 (21%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEFDG----------T 359
FGT + LVD H G+ V++D +H S + ++ +D
Sbjct: 108 FGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDA 167
Query: 360 QACFFHDGPRGTHPLWDSRL--------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
F H+G L D N+ + R+L ++ ++ + DG R D
Sbjct: 168 NMYFHHNGGTTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMWI-DMGIDGIRMD 225
|
| >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Length = 680 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 7e-11
Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 25/119 (21%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEFDG----------T 1072
FGT + LVD H G+ V++D +H S + ++ +D
Sbjct: 108 FGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDA 167
Query: 1073 QACFFHDGPRGTHPLWDSRL--------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
F H+G L D N+ + R+L ++ ++ + DG R D
Sbjct: 168 NMYFHHNGGTTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMWI-DMGIDGIRMD 225
|
| >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Length = 683 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 1e-10
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 25/119 (21%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL---------------DGLNEFDGTQ 360
FG+ + L++ H + V++D +H S L +
Sbjct: 113 FGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDT 172
Query: 361 ACFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
+FH ++ ++ N + +L S ++ +L + DG R D
Sbjct: 173 NGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWL-DMGIDGIRLD 230
|
| >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Length = 683 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 1e-10
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 25/119 (21%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL---------------DGLNEFDGTQ 1073
FG+ + L++ H + V++D +H S L +
Sbjct: 113 FGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDT 172
Query: 1074 ACFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
+FH ++ ++ N + +L S ++ +L + DG R D
Sbjct: 173 NGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWL-DMGIDGIRLD 230
|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* Length = 588 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-10
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQAC---FFHDGPR 1082
FG E LK L+D CH+ G+ V+LD V +H D + ++ H+ P
Sbjct: 219 FGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPL 278
Query: 1083 GTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHN 1132
T P + F N + EV R+LL +++ E+ DG+R D V + + H
Sbjct: 279 QTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLD-VANEIDHE 336
|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* Length = 588 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 5e-10
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQAC---FFHDGPR 369
FG E LK L+D CH+ G+ V+LD V +H D + ++ H+ P
Sbjct: 219 FGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPL 278
Query: 370 GTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHN 419
T P + F N + EV R+LL +++ E+ DG+R D V + + H
Sbjct: 279 QTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLD-VANEIDHE 336
|
| >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Length = 686 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 3e-10
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 25/119 (21%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD---------------GLNEFDGTQ 360
+GT + L+ H + V++D +H S D L +
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 361 ACFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
FH ++ ++ N++ V +L ++ +L + DG R +
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMN 229
|
| >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Length = 686 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 3e-10
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 25/119 (21%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD---------------GLNEFDGTQ 1073
+GT + L+ H + V++D +H S D L +
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 1074 ACFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
FH ++ ++ N++ V +L ++ +L + DG R +
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMN 229
|
| >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* Length = 435 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 6e-10
Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 28/144 (19%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGLNEFDGTQACFFHDGPRGTH 372
FG+ E+L L+ H G+ V+ DVV +H + ++ T G +
Sbjct: 83 FGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTAN 142
Query: 373 PL---------WDSRLF------NYSEIEVLRFLLSNLRW---YLDEYQFDGFRFDGVTS 414
L D F + + +L + YL FDG+RFD V
Sbjct: 143 YLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKG 202
Query: 415 MLYHNHGCGEGFSGHYDEYFGLNV 438
G + ++G
Sbjct: 203 Y-------GAWVVRDWLNWWGGWA 219
|
| >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* Length = 435 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 7e-10
Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 28/144 (19%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGLNEFDGTQACFFHDGPRGTH 1085
FG+ E+L L+ H G+ V+ DVV +H + ++ T G +
Sbjct: 83 FGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTAN 142
Query: 1086 PL---------WDSRLF------NYSEIEVLRFLLSNLRW---YLEEYQFDGFRFDGVTS 1127
L D F + + +L + YL FDG+RFD V
Sbjct: 143 YLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKG 202
Query: 1128 MLYHNHGCGEGFSGHYDEYFGLNV 1151
G + ++G
Sbjct: 203 Y-------GAWVVRDWLNWWGGWA 219
|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Length = 583 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQACFFHDGPRGT 1084
FG + LK LVD CH+ G+ VLLD V +H+ + +D L N +FH
Sbjct: 215 FGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPL 274
Query: 1085 HPLWDSRL------------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHN 1132
+ N +V +LL +++ E DG+R D V + + H
Sbjct: 275 EVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLD-VANEVSHQ 333
|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Length = 583 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 3e-09
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQACFFHDGPRGT 371
FG + LK LVD CH+ G+ VLLD V +H+ + +D L N +FH
Sbjct: 215 FGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPL 274
Query: 372 HPLWDSRL------------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHN 419
+ N +V +LL +++ E DG+R D V + + H
Sbjct: 275 EVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLD-VANEVSHQ 333
|
| >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Length = 686 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 32/126 (25%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL--------DGLNEFDGTQACFFHDG 367
FG LV++ H+ G+ V++D V +H++ L +F D
Sbjct: 104 FGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDA 163
Query: 368 PRGT-HPLWDSRL----------------------FNYSEIEVLRFLLSNLRWYLDEYQF 404
+G H D + + ++L + +
Sbjct: 164 TKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLV-AHGA 222
Query: 405 DGFRFD 410
DG R D
Sbjct: 223 DGLRID 228
|
| >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Length = 686 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 32/126 (25%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL--------DGLNEFDGTQACFFHDG 1080
FG LV++ H+ G+ V++D V +H++ L +F D
Sbjct: 104 FGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDA 163
Query: 1081 PRGT-HPLWDSRL----------------------FNYSEIEVLRFLLSNLRWYLEEYQF 1117
+G H D + + ++L + +
Sbjct: 164 TKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLV-AHGA 222
Query: 1118 DGFRFD 1123
DG R D
Sbjct: 223 DGLRID 228
|
| >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A Length = 422 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 16/112 (14%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP------- 368
GT ++ K + + G+ V++D V +H + + NE +
Sbjct: 71 LGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDR 130
Query: 369 -----RGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415
L+D +N +V +L L L++ DGFRFD +
Sbjct: 131 WDVTQNSLLGLYD---WNTQNTQVQSYLKRFLERALNDG-ADGFRFDAAKHI 178
|
| >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A Length = 422 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 4e-09
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 16/112 (14%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP------- 1081
GT ++ K + + G+ V++D V +H + + NE +
Sbjct: 71 LGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDR 130
Query: 1082 -----RGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 1128
L+D +N +V +L L L + DGFRFD +
Sbjct: 131 WDVTQNSLLGLYD---WNTQNTQVQSYLKRFLERALNDG-ADGFRFDAAKHI 178
|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A Length = 585 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 6e-09
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQAC---FFHDGPR 369
FG + LVDE H+ G+ ++LD V +HA D L + + ++ F D P
Sbjct: 216 FGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPV 275
Query: 370 GTHPLWDSRLF----------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHN 419
+ F EV +L R+++ E DG+R D V + + H
Sbjct: 276 SKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQGIDGWRLD-VANEVDHA 333
|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A Length = 585 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 6e-09
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQAC---FFHDGPR 1082
FG + LVDE H+ G+ ++LD V +HA D L + + ++ F D P
Sbjct: 216 FGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPV 275
Query: 1083 GTHPLWDSRLF----------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHN 1132
+ F EV +L R+++ E DG+R D V + + H
Sbjct: 276 SKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQGIDGWRLD-VANEVDHA 333
|
| >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A Length = 601 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 6e-09
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 22/117 (18%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVL--DGLNEFDGTQACFFHDG 1080
+G+ E L E K G+ ++ DVV SH K++ D +N H
Sbjct: 195 YGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRV 254
Query: 1081 PRGTHPLWDSRLFNY--------------SEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
+ N+ + V +L+ N W++E G R D
Sbjct: 255 AVQDPYAAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRID 311
|
| >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A Length = 601 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 22/117 (18%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVL--DGLNEFDGTQACFFHDG 367
+G+ E L E K G+ ++ DVV SH K++ D +N H
Sbjct: 195 YGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRV 254
Query: 368 PRGTHPLWDSRLFNY--------------SEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
+ N+ + V +L+ N W+++ G R D
Sbjct: 255 AVQDPYAAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRID 311
|
| >1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Length = 750 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-08
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 22/106 (20%)
Query: 1035 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRG-------THP 1086
+ +V H AG+ V +DVV++H A + T + RG
Sbjct: 275 FQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSW-----RGLDNATYYELT 329
Query: 1087 LWDSRLFNYS---------EIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
+ ++ + ++ +L ++ DGFRFD
Sbjct: 330 SGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFD 375
|
| >1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Length = 750 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 22/106 (20%)
Query: 322 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRG-------THP 373
+ +V H AG+ V +DVV++H A + T + RG
Sbjct: 275 FQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSW-----RGLDNATYYELT 329
Query: 374 LWDSRLFNYS---------EIEVLRFLLSNLRWYLDEYQFDGFRFD 410
+ ++ + ++ +L ++ + DGFRFD
Sbjct: 330 SGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFD 375
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} Length = 449 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 38/155 (24%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH---DGPRGTH 1085
+GT K L D H+ G+ V+LD+V++H S + + +F+ DG
Sbjct: 80 YGTLADFKALTDRAHELGMKVMLDIVYNHTSPD-----SVLATEHPEWFYHDADGQLTNK 134
Query: 1086 PLWDSRL--FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY 1143
S + +Y E+ ++ + L ++ + DG+R D
Sbjct: 135 VGDWSDVKDLDYGHHELWQYQIDTLLYWSQF--VDGYRCD------VAPL---------- 176
Query: 1144 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 1178
V D + + A K ++ KYPE + +AE
Sbjct: 177 -------VPLD---FWLEARKQVNAKYPETLWLAE 201
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} Length = 449 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 48/197 (24%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH---DGPRGTH 372
+GT K L D H+ G+ V+LD+V++H S + + +F+ DG
Sbjct: 80 YGTLADFKALTDRAHELGMKVMLDIVYNHTSPD-----SVLATEHPEWFYHDADGQLTNK 134
Query: 373 PLWDSRL--FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY 430
S + +Y E+ ++ + L ++ DG+R D
Sbjct: 135 VGDWSDVKDLDYGHHELWQYQIDTLLYWSQF--VDGYRCD------VAPL---------- 176
Query: 431 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEI 490
V D + + A K ++ KYPE + +AE +G ++G TG
Sbjct: 177 -------VPLD---FWLEARKQVNAKYPETLWLAE-SAGSGFIEELRSQGYTGL------ 219
Query: 491 RPDMSDMTVGTFDAAMN 507
FD +
Sbjct: 220 ---SDSELYQAFDMTYD 233
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A Length = 488 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 24/124 (19%)
Query: 305 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQ 360
Y VD + G E K L+D H+ + V+LD V +H+S+ D L N
Sbjct: 93 YQVDP-----MLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPW 147
Query: 361 ACFFHDGPRGTHPLWDSRL--------------FNYSEIEVLRFLLSNLRWYLDEYQFDG 406
+F P FN+ EV +++ ++L ++ DG
Sbjct: 148 VNWFKIEGWPLSPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYWL-KFGIDG 206
Query: 407 FRFD 410
+R D
Sbjct: 207 WRLD 210
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A Length = 488 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 24/124 (19%)
Query: 1018 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQ 1073
Y VD + G E K L+D H+ + V+LD V +H+S+ D L N
Sbjct: 93 YQVDP-----MLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPW 147
Query: 1074 ACFFHDGPRGTHPLWDSRL--------------FNYSEIEVLRFLLSNLRWYLEEYQFDG 1119
+F P FN+ EV +++ ++L ++ DG
Sbjct: 148 VNWFKIEGWPLSPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYWL-KFGIDG 206
Query: 1120 FRFD 1123
+R D
Sbjct: 207 WRLD 210
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} Length = 475 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 8e-08
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 17/111 (15%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQACFFH---DGP 368
G E L++L++ H G+ V+LD V +H + + N ++H
Sbjct: 93 LGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWYHVKGFPL 152
Query: 369 RGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
+ + + V +LL+ ++ + DG+R D
Sbjct: 153 KAYTAHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHWI-RFGVDGWRLD 202
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} Length = 475 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 8e-08
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 17/111 (15%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQACFFH---DGP 1081
G E L++L++ H G+ V+LD V +H + + N ++H
Sbjct: 93 LGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWYHVKGFPL 152
Query: 1082 RGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
+ + + V +LL+ ++ + DG+R D
Sbjct: 153 KAYTAHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHWI-RFGVDGWRLD 202
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 1e-07
Identities = 106/722 (14%), Positives = 194/722 (26%), Gaps = 205/722 (28%)
Query: 182 YESHVGICTQEQKCASYEDFVRVVIPRIVK--QGMAIPDKWIELLKKFK-DEDWNMGNIV 238
+ H+ T E + Y+D + V V + D +L K + D + V
Sbjct: 3 HHHHMDFETGEHQ-YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 239 HTLTNRRYMEKTVAYAESHDQALVGD--KTIAFWLMDKEMYTHMSTLSDPSLIIDRACEK 296
R ++ E Q V + + +LM PS++ E+
Sbjct: 62 SGT--LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ----RQPSMMTRMYIEQ 115
Query: 297 ----FGTPEQL-KYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLD----VVH--SHA 345
+ + KY V + L + L L ++ +
Sbjct: 116 RDRLYNDNQVFAKYNVSR---------LQPYLKL-----RQALLELRPAKNVLIDGVLGS 161
Query: 346 SKNVL--DGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQ 403
K + D + Q W + L N + E + +L L YQ
Sbjct: 162 GKTWVALDVCLSYK-VQCKM----DFKIF--WLN-LKNCNSPETVLEMLQKLL-----YQ 208
Query: 404 FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 463
D + ++ L L Y + +
Sbjct: 209 ID--------------PNWTSRSDHSSNIKLRIHSIQAELRRL-----LKSKPYENCLLV 249
Query: 464 AEDVS------GMPASCR--------PVTEGGTGFDYRLEIRPDMSDMTVGTFDAAMNTT 509
+V SC+ VT+ + I D MT+ +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA-ATTTHISLDHHSMTLTPDE-----V 303
Query: 510 EERF-KWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYRYCSTQSYSTHNT 568
+ K+L P E + + A +S D T
Sbjct: 304 KSLLLKYLDCRPQ--DLPREVLTTNPRRLS--IIA------ESIRDGL----------AT 343
Query: 569 W-TWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIK 627
W W+ V + K +++S N L+P + + R S+
Sbjct: 344 WDNWK-------HVNCD---KLTTIIESS------LNVLEPAEYRKMF------DRLSV- 380
Query: 628 LYLPTRTGLILTTSPGTSSDIPSG-----WISRELVTTLPTGMLGDNGILLMMNYSSIN- 681
P S+ IP+ W +++ + ++ + YS +
Sbjct: 381 --FP------------PSAHIPTILLSLIW--FDVIKSDVMVVVNK-----LHKYSLVEK 419
Query: 682 ------SSIGGI--EKFTTSYNKYGIH---VQADNSVRCFE-WAPSAQQL--YLTGYNAV 727
SI I E N+Y +H V N + F+ L Y +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 728 QLMAIMEHAYYASFG--YQVTSFFAASSRTMGNSQSVDPASIHIPELHKLLERDPYLNPY 785
L I F + F R + + SI + L +L PY+
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA-SGSI-LNTLQQLKFYKPYICDN 537
Query: 786 QYEMKRRYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQ----------YEMK 835
+ +R +++FL + E++ L Y + + +E
Sbjct: 538 DPKYERLVNAILDFLPKIEEN--------------LICSKYTDLLRIALMAEDEAIFEEA 583
Query: 836 RR 837
+
Sbjct: 584 HK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 7e-06
Identities = 105/751 (13%), Positives = 213/751 (28%), Gaps = 252/751 (33%)
Query: 484 FDYRLEIRPDMSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVII----FERAG 539
+ Y+ +I D V FD K + P + +K E D +I+
Sbjct: 16 YQYK-DILSVFEDAFVDNFD---------CKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 540 LLF----AFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDS 595
LF + Q F + +Y + S + + +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVL--RINYK----FLM----SPIKT-------EQR----- 103
Query: 596 DCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP---TRTGLILTTSPGTSSDIPSGW 652
P + Y E + N +++ +R L P+
Sbjct: 104 -----------QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 653 ISRELVTTLPTGMLGDNGILLMMNYSSINSSIGGIEKFTT----SYNKYGIHVQADNSVR 708
+ + G+LG G K T Y + + D +
Sbjct: 153 VLID-------GVLG----------------SG---K-TWVALDVCLSYKVQCKMDFKI- 184
Query: 709 CFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIH 768
F W + ++ +++ YQ+ + + S N IH
Sbjct: 185 -F-WLNLKNC-----NSPETVLEMLQ-----KLLYQIDPNWTSRSDHSSN----IKLRIH 228
Query: 769 --IPELHKLLERDPYLNPYQYEMKRRYGLMV-------NFLEQFEKHEDPASIHIPELHK 819
EL +LL+ PY N L+V F + + K
Sbjct: 229 SIQAELRRLLKSKPYEN----------CLLVLLNVQNAKAWNAF----NLSC-------K 267
Query: 820 LLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHK 879
+L + R+ + +FL A T + D H
Sbjct: 268 IL------------LTTRFKQVTDFLS-----AATTTHISL---------------DHHS 295
Query: 880 WTSSKPKKPENLKIYESHVGICTQ---EQKCASYEDFVRVVIPRIVKQGDFNNWNREEFA 936
T + E + ++ Q + + +I ++ G W+
Sbjct: 296 MTLT---PDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIAESIRDG-LATWDN---- 346
Query: 937 YKKLDFGKWELVLPPNPDGDFNNWNREEF--AYKKLDFGKWELVLPPNPDGSCKLTHLSQ 994
+K ++ K ++ + N E+ + +L V PP+ H+
Sbjct: 347 WKHVNCDKLTTII----ESSLNVLEPAEYRKMFDRL------SVFPPS-------AHIPT 389
Query: 995 VKLVVRNQHGHLLDRFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLYVLLDV 1053
+ L + + + +V++ HK L P++ + +Y+ L V
Sbjct: 390 ILLSL-------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI---P--SIYLELKV 437
Query: 1054 -------VHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNY----------- 1095
+H ++++D N F D P D +++
Sbjct: 438 KLENEYALH----RSIVDHYN----IPKTFDSDDL--IPPYLDQYFYSHIGHHLKNIEHP 487
Query: 1096 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSML--------YHNHGCGEGFSGHYDEYF 1147
+ + R + + R+ ++ + D ++ S+L Y + C Y+
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN--DPKYERLV 545
Query: 1148 GLNVDTDALIYLM-VANKFLHDKYPEIITIA 1177
L +L + + KY +++ IA
Sbjct: 546 N-----AILDFLPKIEENLICSKYTDLLRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 3e-05
Identities = 49/340 (14%), Positives = 104/340 (30%), Gaps = 91/340 (26%)
Query: 82 DFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKL---THLSQVKLVVRNQHGHLLDR--- 135
D + + + +++D +++ + T LS+ + +V+ +L
Sbjct: 37 DVQDMPKSILSKEEID----HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 136 --LSPWATYVTEPPVVGHAYEQ---RIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICT 190
+SP T +P ++ Y + R++N Q K+ S+ + L+
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQ-------AL 144
Query: 191 QEQKCASYEDFVRVVIPRIVKQGMAIPDKW---IELLKKFKDEDWNMGNIVHTLTNRRYM 247
E + A ++ G+ K +++ +K + M + ++
Sbjct: 145 LELRPAKN----------VLIDGVLGSGKTWVALDVCLSYKVQC-KMDFKIF------WL 187
Query: 248 EKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLV 307
+ S + L EM + DP+ + +K +
Sbjct: 188 --NLKNCNSPETVL-------------EMLQKLLYQIDPNW-----TSRSDHSSNIKLRI 227
Query: 308 DECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQAC----- 362
E + L + ++ L VLL+V + + F+ + C
Sbjct: 228 HS-------IQAELRRLLKSKPYENCLLVLLNV----QNAKAWNA---FNLS--CKILLT 271
Query: 363 -------FFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 395
F TH D + EV LL L
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
|
| >2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12} Length = 657 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 3e-07
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 38/112 (33%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP----RG----- 1083
++ + + HKAG+ V+LD+V +H++ E D DGP RG
Sbjct: 242 DEFRDAIKALHKAGIEVILDIVLNHSA--------ELD-------LDGPLFSLRGIDNRS 286
Query: 1084 ---THPLWDSRLFNYS---------EIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
D N++ V+ + + LR+++E DGFRFD
Sbjct: 287 YYWIRE--DGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFD 336
|
| >2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12} Length = 657 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 5e-07
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 38/112 (33%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP----RG----- 370
++ + + HKAG+ V+LD+V +H++ E D DGP RG
Sbjct: 242 DEFRDAIKALHKAGIEVILDIVLNHSA--------ELD-------LDGPLFSLRGIDNRS 286
Query: 371 ---THPLWDSRLFNYS---------EIEVLRFLLSNLRWYLDEYQFDGFRFD 410
D N++ V+ + + LR++++ DGFRFD
Sbjct: 287 YYWIRE--DGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFD 336
|
| >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A Length = 599 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 4e-07
Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 51/148 (34%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSH-----------ASKNVLDGLNEFDGTQACFF 364
+GT +L+ +D H + V D V +H +N D ++ F
Sbjct: 205 YGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAWTGFN 264
Query: 365 HDGPRGTHP--LWDSRLF--------------------------------------NYSE 384
G G + W+ + F +Y
Sbjct: 265 FPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDEKSWDWTYNWDEDYLMGADVDYEN 324
Query: 385 IEVLRFLLSNLRWYLDEYQFDGFRFDGV 412
V ++ +W ++ FDGFR D V
Sbjct: 325 EAVQNDVIDWGQWIINNIDFDGFRLDAV 352
|
| >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A Length = 599 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 4e-07
Identities = 26/148 (17%), Positives = 43/148 (29%), Gaps = 51/148 (34%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSH-----------ASKNVLDGLNEFDGTQACFF 1077
+GT +L+ +D H + V D V +H +N D ++ F
Sbjct: 205 YGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAWTGFN 264
Query: 1078 HDGPRGTHP--LWDSRLF--------------------------------------NYSE 1097
G G + W+ + F +Y
Sbjct: 265 FPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDEKSWDWTYNWDEDYLMGADVDYEN 324
Query: 1098 IEVLRFLLSNLRWYLEEYQFDGFRFDGV 1125
V ++ +W + FDGFR D V
Sbjct: 325 EAVQNDVIDWGQWIINNIDFDGFRLDAV 352
|
| >2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* Length = 718 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 5e-07
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 32/105 (30%)
Query: 1035 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRGTHP-----LW 1088
LK +++ H+ GL V+LDVV +H + + T P
Sbjct: 318 LKQMINTLHQHGLRVILDVVFNHVYKRE----------------NSPFEKTVPGYFFRHD 361
Query: 1089 DSRLF-NYS----EIE-----VLRFLLSNLRWYLEEYQFDGFRFD 1123
+ N + +I +F+ + ++LEEY DGFRFD
Sbjct: 362 ECGKPSNGTGVGNDIASERRMARKFIADCVVYWLEEYNVDGFRFD 406
|
| >2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* Length = 718 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 32/105 (30%)
Query: 322 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRGTHP-----LW 375
LK +++ H+ GL V+LDVV +H + + T P
Sbjct: 318 LKQMINTLHQHGLRVILDVVFNHVYKRE----------------NSPFEKTVPGYFFRHD 361
Query: 376 DSRLF-NYS----EIE-----VLRFLLSNLRWYLDEYQFDGFRFD 410
+ N + +I +F+ + ++L+EY DGFRFD
Sbjct: 362 ECGKPSNGTGVGNDIASERRMARKFIADCVVYWLEEYNVDGFRFD 406
|
| >3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* Length = 877 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 7e-07
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 31/103 (30%)
Query: 1035 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRG-- 1083
LK L+ + HK G+ V+LDVV++H A + + +NE DG+ + G
Sbjct: 372 LKQLIHDIHKRGMGVILDVVYNHTAKTYLFEDIEPNYYHFMNE-DGS----PRESFGGGR 426
Query: 1084 ---THPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
TH + R L+ ++++ E++ DGFRFD
Sbjct: 427 LGTTHAM------------SRRVLVDSIKYLTSEFKVDGFRFD 457
|
| >3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* Length = 877 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-06
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 31/103 (30%)
Query: 322 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRG-- 370
LK L+ + HK G+ V+LDVV++H A + + +NE DG+ + G
Sbjct: 372 LKQLIHDIHKRGMGVILDVVYNHTAKTYLFEDIEPNYYHFMNE-DGS----PRESFGGGR 426
Query: 371 ---THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
TH + R L+ ++++ E++ DGFRFD
Sbjct: 427 LGTTHAM------------SRRVLVDSIKYLTSEFKVDGFRFD 457
|
| >2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A Length = 718 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 9e-07
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 36/112 (32%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP----RG----- 1083
K +V+E H AG+ V++DVV++H + E + H GP RG
Sbjct: 267 LSFKKMVNELHNAGIEVIIDVVYNHTA--------EGN-------HLGPTLSFRGIDNTA 311
Query: 1084 ---THPLWDSRLFNYS---------EIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
P +++ V++ +L +LR+++ E DGFRFD
Sbjct: 312 YYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHVDGFRFD 363
|
| >2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A Length = 718 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 36/112 (32%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP----RG----- 370
K +V+E H AG+ V++DVV++H + E + H GP RG
Sbjct: 267 LSFKKMVNELHNAGIEVIIDVVYNHTA--------EGN-------HLGPTLSFRGIDNTA 311
Query: 371 ---THPLWDSRLFNYS---------EIEVLRFLLSNLRWYLDEYQFDGFRFD 410
P +++ V++ +L +LR+++ E DGFRFD
Sbjct: 312 YYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHVDGFRFD 363
|
| >2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A* Length = 714 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 35/105 (33%)
Query: 1035 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRGT- 1084
K L++E HK G+ +LDVV++H A ++ + ++ DGT
Sbjct: 257 FKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDA-DGT----PRTS--FGG 309
Query: 1085 ------HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
H + R L+ ++++ ++ Y+ DGFRFD
Sbjct: 310 GRLGTTHHM------------TKRLLIDSIKYLVDTYKVDGFRFD 342
|
| >2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A* Length = 714 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 35/105 (33%)
Query: 322 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRGT- 371
K L++E HK G+ +LDVV++H A ++ + ++ DGT
Sbjct: 257 FKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDA-DGT----PRTS--FGG 309
Query: 372 ------HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
H + R L+ ++++ +D Y+ DGFRFD
Sbjct: 310 GRLGTTHHM------------TKRLLIDSIKYLVDTYKVDGFRFD 342
|
| >2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae} Length = 1014 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 1e-06
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 31/103 (30%)
Query: 1035 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRG-- 1083
K L++E HK G+ +LDVV++H A ++ + ++ DGT G
Sbjct: 564 FKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDA-DGT----PRTSFGGGR 618
Query: 1084 ---THPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
TH + R L+ ++++ ++ Y+ DGFRFD
Sbjct: 619 LGTTHHM------------TKRLLIDSIKYLVDTYKVDGFRFD 649
|
| >2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae} Length = 1014 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 31/103 (30%)
Query: 322 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRG-- 370
K L++E HK G+ +LDVV++H A ++ + ++ DGT G
Sbjct: 564 FKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDA-DGT----PRTSFGGGR 618
Query: 371 ---THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
TH + R L+ ++++ +D Y+ DGFRFD
Sbjct: 619 LGTTHHM------------TKRLLIDSIKYLVDTYKVDGFRFD 649
|
| >2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} Length = 921 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 22/100 (22%)
Query: 1035 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQ-ACFFHDGPRGTHPLWDSRL 1092
LK L+ H+ + V +DVV++H V D FD ++ G
Sbjct: 534 LKQLIQSLHQQRIGVNMDVVYNHTFDVMVSD----FDKIVPQYYYRTDSNGN-------Y 582
Query: 1093 FNYS----EIE-----VLRFLLSNLRWYLEEYQFDGFRFD 1123
N S E +F+L ++ +++ EY DGFRFD
Sbjct: 583 TNGSGCGNEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFD 622
|
| >2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} Length = 921 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 22/100 (22%)
Query: 322 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQ-ACFFHDGPRGTHPLWDSRL 379
LK L+ H+ + V +DVV++H V D FD ++ G
Sbjct: 534 LKQLIQSLHQQRIGVNMDVVYNHTFDVMVSD----FDKIVPQYYYRTDSNGN-------Y 582
Query: 380 FNYS----EIE-----VLRFLLSNLRWYLDEYQFDGFRFD 410
N S E +F+L ++ ++++EY DGFRFD
Sbjct: 583 TNGSGCGNEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFD 622
|
| >3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* Length = 695 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 3e-06
Identities = 27/165 (16%), Positives = 49/165 (29%), Gaps = 53/165 (32%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL-----DGLNEFDGTQACFFHDGPRG 1083
GT + + V E K GL + LD + + + +FH P G
Sbjct: 317 LGTLDDFDHFVTEAGKLGLEIALDFALQCSPDHPWVHKHPE-----------WFHHRPDG 365
Query: 1084 THPLWDSRLFNYSEI----------EVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNH 1133
T ++ Y +I + + LR +++ FR D
Sbjct: 366 TIAHAENPPKKYQDIYPIAFDADPDGLATETVRILRHWMDH-GVRIFRVD---------- 414
Query: 1134 GCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 1178
N T + + ++ P++I +AE
Sbjct: 415 ----------------NPHTKPVAFWERVIADINGTDPDVIFLAE 443
|
| >3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* Length = 695 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 3e-06
Identities = 28/165 (16%), Positives = 49/165 (29%), Gaps = 53/165 (32%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL-----DGLNEFDGTQACFFHDGPRG 370
GT + + V E K GL + LD + + + +FH P G
Sbjct: 317 LGTLDDFDHFVTEAGKLGLEIALDFALQCSPDHPWVHKHPE-----------WFHHRPDG 365
Query: 371 THPLWDSRLFNYSEI----------EVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNH 420
T ++ Y +I + + LR ++D FR D
Sbjct: 366 TIAHAENPPKKYQDIYPIAFDADPDGLATETVRILRHWMDH-GVRIFRVD---------- 414
Query: 421 GCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 465
N T + + ++ P++I +AE
Sbjct: 415 ----------------NPHTKPVAFWERVIADINGTDPDVIFLAE 443
|
| >4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 4e-06
Identities = 19/145 (13%), Positives = 43/145 (29%), Gaps = 43/145 (29%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS----------------------KNVLDGL 1066
GT E + LV H + ++LD+ H + +
Sbjct: 308 LGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNELFVKALREGENSPYWEMFSFLSPPP 367
Query: 1067 NEFDGTQACFFHDGPRGTHPLWDSRL-------------------FNYSEIEVLRFLLSN 1107
E + + L+ FN+ + + +
Sbjct: 368 KEIVELMLKYIDGEECRSRELYKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFIDI 427
Query: 1108 LRWYLEEYQFDGFRFDGVTSMLYHN 1132
++++++ DGFR D V ++++
Sbjct: 428 TKFWIDK-GIDGFRID-VAMGIHYS 450
|
| >4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 20/145 (13%), Positives = 43/145 (29%), Gaps = 43/145 (29%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS----------------------KNVLDGL 353
GT E + LV H + ++LD+ H + +
Sbjct: 308 LGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNELFVKALREGENSPYWEMFSFLSPPP 367
Query: 354 NEFDGTQACFFHDGPRGTHPLWDSRL-------------------FNYSEIEVLRFLLSN 394
E + + L+ FN+ + + +
Sbjct: 368 KEIVELMLKYIDGEECRSRELYKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFIDI 427
Query: 395 LRWYLDEYQFDGFRFDGVTSMLYHN 419
++++D+ DGFR D V ++++
Sbjct: 428 TKFWIDK-GIDGFRID-VAMGIHYS 450
|
| >4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A Length = 884 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 6e-06
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 27/104 (25%)
Query: 1035 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQ-ACFFHDGPRGT-------- 1084
+ +V ++ GL V++DVV++H S + D + G
Sbjct: 381 YRQMVQALNRIGLRVVMDVVYNHLDSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAMN 440
Query: 1085 -----HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
H + V R ++ +L + Y+ DGFRFD
Sbjct: 441 NTASEHFM------------VDRLIVDDLLNWAVNYKVDGFRFD 472
|
| >4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A Length = 884 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 27/104 (25%)
Query: 322 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQ-ACFFHDGPRGT-------- 371
+ +V ++ GL V++DVV++H S + D + G
Sbjct: 381 YRQMVQALNRIGLRVVMDVVYNHLDSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAMN 440
Query: 372 -----HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
H + V R ++ +L + Y+ DGFRFD
Sbjct: 441 NTASEHFM------------VDRLIVDDLLNWAVNYKVDGFRFD 472
|
| >1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* Length = 485 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 3e-05
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 18/128 (14%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GT QL+ V G+ V DVV +H G + + +A + R
Sbjct: 79 YGTRSQLQAAVTSLKNNGIQVYGDVVMNHKG-----GADATEMVRAVEVNPNNRNQEVTG 133
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV--------TSMLYHNHGCGEGFS 427
+ + ++ RF +++ + FDGV + +Y G G+ +
Sbjct: 134 EYTIEAWT-----RFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWD 188
Query: 428 GHYDEYFG 435
D G
Sbjct: 189 WEVDTENG 196
|
| >1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* Length = 485 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 18/128 (14%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+GT QL+ V G+ V DVV +H G + + +A + R
Sbjct: 79 YGTRSQLQAAVTSLKNNGIQVYGDVVMNHKG-----GADATEMVRAVEVNPNNRNQEVTG 133
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV--------TSMLYHNHGCGEGFS 1140
+ + ++ RF +++ + FDGV + +Y G G+ +
Sbjct: 134 EYTIEAWT-----RFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWD 188
Query: 1141 GHYDEYFG 1148
D G
Sbjct: 189 WEVDTENG 196
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 Length = 515 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 7/122 (5%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GT Q + H AG+ V DVV H K DG D + D + +
Sbjct: 78 YGTKAQYLQAIQAAHAAGMQVYADVVFDH--KGGADGTEWVDAVEVNPS-DRNQEISGTY 134
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD--GVTSMLYHNHGCGEGFSGHYDEY 433
+ + + S+ +W Y FDG +D S +Y G G+ + D
Sbjct: 135 QIQAWTKFDFPGRGNTYSSFKW--RWYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTE 192
Query: 434 FG 435
G
Sbjct: 193 NG 194
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 Length = 515 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 7/122 (5%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+GT Q + H AG+ V DVV H K DG D + D + +
Sbjct: 78 YGTKAQYLQAIQAAHAAGMQVYADVVFDH--KGGADGTEWVDAVEVNPS-DRNQEISGTY 134
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD--GVTSMLYHNHGCGEGFSGHYDEY 1146
+ + + S+ +W Y FDG +D S +Y G G+ + D
Sbjct: 135 QIQAWTKFDFPGRGNTYSSFKWRW--YHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTE 192
Query: 1147 FG 1148
G
Sbjct: 193 NG 194
|
| >2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A* Length = 1083 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 7e-05
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 17/100 (17%)
Query: 1035 LKYLVDECHK-AGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 1092
+ ++ + G+ V++DVV++H + D + D ++ +
Sbjct: 584 FRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNE------TTGS 637
Query: 1093 FNYS---------EIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
+ + + +L + +Y+ DGFRFD
Sbjct: 638 VESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFD 677
|
| >2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A* Length = 1083 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 17/100 (17%)
Query: 322 LKYLVDECHK-AGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 379
+ ++ + G+ V++DVV++H + D + D ++ +
Sbjct: 584 FRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNE------TTGS 637
Query: 380 FNYS---------EIEVLRFLLSNLRWYLDEYQFDGFRFD 410
+ + + +L + +Y+ DGFRFD
Sbjct: 638 VESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFD 677
|
| >1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A Length = 637 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 28/141 (19%)
Query: 1029 FGTPEQLKYLVDECHKAGLY----VLLDVVHSHASKN--VLDGLNEFDGTQACFFHDGPR 1082
FG L+ L+++ H ++LD V +H + D N F A P
Sbjct: 235 FGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHPWFDKYNNFSSQGAYESQSSPW 294
Query: 1083 GTHPLWDSRLFNY----------------SEIEVLRFLLSNL-----RWYLEEYQFDGFR 1121
+ + + +Y S V + +N + Y DG+R
Sbjct: 295 YNYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWR 354
Query: 1122 FDGVTSMLYHNHGCGEGFSGH 1142
D + N G + H
Sbjct: 355 LD-AAQYVDANGNNGSDVTNH 374
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A Length = 483 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 21/129 (16%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVV-------HSHASKNVLDGLNEFDGTQACFFHDGP 368
+GT +L+ + H + V DVV + ++ + +
Sbjct: 75 YGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIK 134
Query: 369 RGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD--GVTSMLYHNHGCGEGF 426
T + R Y S+ +W+ Y FDG +D S ++ G G+ +
Sbjct: 135 AWTDFRFPGRGNTY----------SDFKWHW--YHFDGADWDESRKISRIFKFRGEGKAW 182
Query: 427 SGHYDEYFG 435
G
Sbjct: 183 DWEVSSENG 191
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A Length = 483 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 21/129 (16%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVV-------HSHASKNVLDGLNEFDGTQACFFHDGP 1081
+GT +L+ + H + V DVV + ++ + +
Sbjct: 75 YGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIK 134
Query: 1082 RGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD--GVTSMLYHNHGCGEGF 1139
T + R Y S+ +W+ Y FDG +D S ++ G G+ +
Sbjct: 135 AWTDFRFPGRGNTY----------SDFKWHW--YHFDGADWDESRKISRIFKFRGEGKAW 182
Query: 1140 SGHYDEYFG 1148
G
Sbjct: 183 DWEVSSENG 191
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A Length = 480 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 27/158 (17%), Positives = 44/158 (27%), Gaps = 41/158 (25%)
Query: 296 KFGTPEQLKYLVDEC--------------HKAGLFGTPEQLKYLVDECH----------- 330
K+GT QL+ + HK G T V+ +
Sbjct: 76 KYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTI 135
Query: 331 ----------KAGLYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFHDGPRGTHPL 374
+ Y H + + + + F T + D G +
Sbjct: 136 DAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDY 195
Query: 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 412
++S EV L W+ DE DG+R D +
Sbjct: 196 LLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAI 233
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A Length = 480 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 28/166 (16%), Positives = 48/166 (28%), Gaps = 41/166 (24%)
Query: 1001 NQHGHLLDRFGTPEQLKYLVDEC--------------HKAGLFGTPEQLKYLVDECH--- 1043
NQ G + ++GT QL+ + HK G T V+ +
Sbjct: 68 NQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQ 127
Query: 1044 ------------------KAGLYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFHD 1079
+ Y H + + + + F T + D
Sbjct: 128 DISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVD 187
Query: 1080 GPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV 1125
G + ++S EV L W+ +E DG+R D +
Sbjct: 188 EENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAI 233
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A Length = 480 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 9e-04
Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 19/127 (14%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GT QL+ + + V DVV +H W
Sbjct: 77 YGTKAQLERAIGSLKSNDINVYGDVVMNHKM----------GADFTEAVQAVQVNPTNRW 126
Query: 376 DSRLFNYSEIEVLRFLL-------SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSG 428
Y+ F S+ +W + F+G +D + ++
Sbjct: 127 QDISGAYTIDAWTGFDFSGRNNAYSDFKW--RWFHFNGVDWDQRYQENHIFRFANTNWNW 184
Query: 429 HYDEYFG 435
DE G
Sbjct: 185 RVDEENG 191
|
| >1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* Length = 448 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 29/196 (14%), Positives = 54/196 (27%), Gaps = 38/196 (19%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN-------VLDGLNEFDGTQACFFHD-G 367
G Q +V+ C AG+ + +D + +H + G F FH+
Sbjct: 61 GGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHESC 120
Query: 368 PRGTHPLWDSRL------------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD----- 410
+ R + + V + + + GFRFD
Sbjct: 121 TINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYINDLQA-IGVKGFRFDASKHV 179
Query: 411 ------GVTSMLYHNHGC-GEGFSG-----HYDEYFGLNVDTDALIYLMVANKFLHDKYP 458
+ + + + E EY + T+ + N F +
Sbjct: 180 AASDIQSLMAKVNGSPVVFQEVIDQGGEAVGASEYLSTGLVTEFKYSTELGNTFRNGSLA 239
Query: 459 EIITIAEDVSGMPASC 474
+ E MP+S
Sbjct: 240 WLSNFGEGWGFMPSSS 255
|
| >1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* Length = 448 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 30/196 (15%), Positives = 56/196 (28%), Gaps = 38/196 (19%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN-------VLDGLNEFDGTQACFFHD-G 1080
G Q +V+ C AG+ + +D + +H + G F FH+
Sbjct: 61 GGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHESC 120
Query: 1081 PRGTHPLWDSRL------------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD----- 1123
+ R + + V + + + L+ GFRFD
Sbjct: 121 TINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYIND-LQAIGVKGFRFDASKHV 179
Query: 1124 ------GVTSMLYHNHGC-GEGFSG-----HYDEYFGLNVDTDALIYLMVANKFLHDKYP 1171
+ + + + E EY + T+ + N F +
Sbjct: 180 AASDIQSLMAKVNGSPVVFQEVIDQGGEAVGASEYLSTGLVTEFKYSTELGNTFRNGSLA 239
Query: 1172 EIITIAEDVSGMPASC 1187
+ E MP+S
Sbjct: 240 WLSNFGEGWGFMPSSS 255
|
| >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* Length = 637 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 8e-04
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
F E+ K V+ CH G+ V+LD + A+++ D + T P
Sbjct: 178 FKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRA 237
Query: 1089 DSRLFNYSEIEVLRFLLS--NLRWYLEEYQFD 1118
+ F + + L + + N++ +L+++
Sbjct: 238 EELPFKVPDEDELEIIYNKENVKRHLKKFTLP 269
|
| >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* Length = 637 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 8e-04
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
F E+ K V+ CH G+ V+LD + A+++ D + T P
Sbjct: 178 FKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRA 237
Query: 376 DSRLFNYSEIEVLRFLLS--NLRWYLDEYQFD 405
+ F + + L + + N++ +L ++
Sbjct: 238 EELPFKVPDEDELEIIYNKENVKRHLKKFTLP 269
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1351 | |||
| 3aml_A | 755 | OS06G0726400 protein; starch-branching, transferas | 100.0 | |
| 3k1d_A | 722 | 1,4-alpha-glucan-branching enzyme; mycobacterium t | 100.0 | |
| 1m7x_A | 617 | 1,4-alpha-glucan branching enzyme; alpha/beta barr | 100.0 | |
| 3aml_A | 755 | OS06G0726400 protein; starch-branching, transferas | 100.0 | |
| 1m7x_A | 617 | 1,4-alpha-glucan branching enzyme; alpha/beta barr | 100.0 | |
| 3k1d_A | 722 | 1,4-alpha-glucan-branching enzyme; mycobacterium t | 100.0 | |
| 2e8y_A | 718 | AMYX protein, pullulanase; multiple domain, beta-a | 100.0 | |
| 2e8y_A | 718 | AMYX protein, pullulanase; multiple domain, beta-a | 100.0 | |
| 2wan_A | 921 | Pullulanase; hydrolase, glycoside hydrolase, polys | 100.0 | |
| 2wsk_A | 657 | Glycogen debranching enzyme; carbohydrate metaboli | 100.0 | |
| 2wan_A | 921 | Pullulanase; hydrolase, glycoside hydrolase, polys | 100.0 | |
| 1ea9_C | 583 | Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A | 100.0 | |
| 1wzl_A | 585 | Alpha-amylase II; pullulan, GH-13, alpha-amylase f | 100.0 | |
| 1j0h_A | 588 | Neopullulanase; beta-alpha-barrels, hydrolase; 1.9 | 100.0 | |
| 3faw_A | 877 | Reticulocyte binding protein; TIM barrel, beta bar | 100.0 | |
| 2fhf_A | 1083 | Pullulanase; multiple domain, beta-alpha-barrel, a | 100.0 | |
| 2ya0_A | 714 | Putative alkaline amylopullulanase; hydrolase, gly | 100.0 | |
| 2vr5_A | 718 | Glycogen operon protein GLGX; hydrolase, glycosida | 100.0 | |
| 2fhf_A | 1083 | Pullulanase; multiple domain, beta-alpha-barrel, a | 100.0 | |
| 2ya0_A | 714 | Putative alkaline amylopullulanase; hydrolase, gly | 100.0 | |
| 2wsk_A | 657 | Glycogen debranching enzyme; carbohydrate metaboli | 100.0 | |
| 3m07_A | 618 | Putative alpha amylase; IDP00968, csgid, structura | 100.0 | |
| 1bf2_A | 750 | Isoamylase; hydrolase, glycosidase, debranching en | 100.0 | |
| 2vr5_A | 718 | Glycogen operon protein GLGX; hydrolase, glycosida | 100.0 | |
| 3faw_A | 877 | Reticulocyte binding protein; TIM barrel, beta bar | 100.0 | |
| 2ya1_A | 1014 | Putative alkaline amylopullulanase; hydrolase, gly | 100.0 | |
| 1bf2_A | 750 | Isoamylase; hydrolase, glycosidase, debranching en | 100.0 | |
| 1ji1_A | 637 | Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6 | 100.0 | |
| 3vgf_A | 558 | Malto-oligosyltrehalose trehalohydrolase; alpha/be | 100.0 | |
| 3m07_A | 618 | Putative alpha amylase; IDP00968, csgid, structura | 100.0 | |
| 3vgf_A | 558 | Malto-oligosyltrehalose trehalohydrolase; alpha/be | 100.0 | |
| 2ya1_A | 1014 | Putative alkaline amylopullulanase; hydrolase, gly | 100.0 | |
| 2bhu_A | 602 | Maltooligosyltrehalose trehalohydrolase; alpha-amy | 100.0 | |
| 2bhu_A | 602 | Maltooligosyltrehalose trehalohydrolase; alpha-amy | 100.0 | |
| 4aio_A | 884 | Limit dextrinase; hydrolase, pullulanase, glycosid | 100.0 | |
| 4aio_A | 884 | Limit dextrinase; hydrolase, pullulanase, glycosid | 100.0 | |
| 1wzl_A | 585 | Alpha-amylase II; pullulan, GH-13, alpha-amylase f | 100.0 | |
| 4aee_A | 696 | Alpha amylase, catalytic region; hydrolase, hypert | 100.0 | |
| 1j0h_A | 588 | Neopullulanase; beta-alpha-barrels, hydrolase; 1.9 | 100.0 | |
| 1ea9_C | 583 | Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A | 100.0 | |
| 4aef_A | 645 | Neopullulanase (alpha-amylase II); hydrolase, ther | 100.0 | |
| 1gjw_A | 637 | Maltodextrin glycosyltransferase; alpha-amylase, m | 100.0 | |
| 1ji1_A | 637 | Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6 | 100.0 | |
| 4aie_A | 549 | Glucan 1,6-alpha-glucosidase; hydrolase, glycoside | 100.0 | |
| 2wc7_A | 488 | Alpha amylase, catalytic region; CD/PUL-hydrolyzin | 100.0 | |
| 2z1k_A | 475 | (NEO)pullulanase; hydrolase, structural genomics, | 100.0 | |
| 1wza_A | 488 | Alpha-amylase A; hydrolase, halophilic, thermophil | 100.0 | |
| 3edf_A | 601 | FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c | 100.0 | |
| 1zja_A | 557 | Trehalulose synthase; sucrose isomerase, alpha-amy | 100.0 | |
| 1m53_A | 570 | Isomaltulose synthase; klebsiella SP. LX3, sucrose | 100.0 | |
| 1gjw_A | 637 | Maltodextrin glycosyltransferase; alpha-amylase, m | 100.0 | |
| 1uok_A | 558 | Oligo-1,6-glucosidase; sugar degradation, hydrolas | 100.0 | |
| 3aj7_A | 589 | Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro | 100.0 | |
| 2aaa_A | 484 | Alpha-amylase; glycosidase; 2.10A {Aspergillus nig | 100.0 | |
| 4aee_A | 696 | Alpha amylase, catalytic region; hydrolase, hypert | 100.0 | |
| 1cyg_A | 680 | Cyclodextrin glucanotransferase; glycosyltransfera | 100.0 | |
| 3dhu_A | 449 | Alpha-amylase; structural genomics, hydrolase, gly | 100.0 | |
| 2zic_A | 543 | Dextran glucosidase; TIM barrel, (beta/alpha)8-bar | 100.0 | |
| 1d3c_A | 686 | Cyclodextrin glycosyltransferase; alpha-amylase, p | 100.0 | |
| 3k8k_A | 669 | Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, bet | 100.0 | |
| 2guy_A | 478 | Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; | 100.0 | |
| 1qho_A | 686 | Alpha-amylase; glycoside hydrolase, starch degrada | 100.0 | |
| 1wza_A | 488 | Alpha-amylase A; hydrolase, halophilic, thermophil | 100.0 | |
| 3bmv_A | 683 | Cyclomaltodextrin glucanotransferase; glycosidase, | 100.0 | |
| 2ze0_A | 555 | Alpha-glucosidase; TIM barrel, glucoside hydrolase | 100.0 | |
| 2z1k_A | 475 | (NEO)pullulanase; hydrolase, structural genomics, | 100.0 | |
| 1lwj_A | 441 | 4-alpha-glucanotransferase; alpha-amylase family, | 100.0 | |
| 3edf_A | 601 | FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c | 100.0 | |
| 2dh2_A | 424 | 4F2 cell-surface antigen heavy chain; TIM-barrel, | 100.0 | |
| 4aef_A | 645 | Neopullulanase (alpha-amylase II); hydrolase, ther | 100.0 | |
| 1wpc_A | 485 | Glucan 1,4-alpha-maltohexaosidase; maltohexaose-pr | 100.0 | |
| 2wc7_A | 488 | Alpha amylase, catalytic region; CD/PUL-hydrolyzin | 100.0 | |
| 1hvx_A | 515 | Alpha-amylase; hydrolase, glycosyltransferase, the | 100.0 | |
| 3zss_A | 695 | Putative glucanohydrolase PEP1A; alpha-glucan bios | 100.0 | |
| 1lwj_A | 441 | 4-alpha-glucanotransferase; alpha-amylase family, | 100.0 | |
| 3czg_A | 644 | Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; | 100.0 | |
| 1zja_A | 557 | Trehalulose synthase; sucrose isomerase, alpha-amy | 100.0 | |
| 4aie_A | 549 | Glucan 1,6-alpha-glucosidase; hydrolase, glycoside | 100.0 | |
| 1g5a_A | 628 | Amylosucrase; glycosyltransferase, glycoside hydro | 100.0 | |
| 1ud2_A | 480 | Amylase, alpha-amylase; calcium-free, alkaline, hy | 100.0 | |
| 3aj7_A | 589 | Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro | 100.0 | |
| 3k8k_A | 669 | Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, bet | 100.0 | |
| 3bh4_A | 483 | Alpha-amylase; calcium, carbohydrate metabolism, g | 100.0 | |
| 1ua7_A | 422 | Alpha-amylase; beta-alpha-barrels, acarbose, greek | 100.0 | |
| 1m53_A | 570 | Isomaltulose synthase; klebsiella SP. LX3, sucrose | 100.0 | |
| 2zic_A | 543 | Dextran glucosidase; TIM barrel, (beta/alpha)8-bar | 100.0 | |
| 2aaa_A | 484 | Alpha-amylase; glycosidase; 2.10A {Aspergillus nig | 100.0 | |
| 1uok_A | 558 | Oligo-1,6-glucosidase; sugar degradation, hydrolas | 100.0 | |
| 3dhu_A | 449 | Alpha-amylase; structural genomics, hydrolase, gly | 100.0 | |
| 3ucq_A | 655 | Amylosucrase; thermostability, amylose synthesis, | 100.0 | |
| 2guy_A | 478 | Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; | 100.0 | |
| 3bmv_A | 683 | Cyclomaltodextrin glucanotransferase; glycosidase, | 100.0 | |
| 2ze0_A | 555 | Alpha-glucosidase; TIM barrel, glucoside hydrolase | 100.0 | |
| 1d3c_A | 686 | Cyclodextrin glycosyltransferase; alpha-amylase, p | 100.0 | |
| 3bc9_A | 599 | AMYB, alpha amylase, catalytic region; acarbose, t | 100.0 | |
| 1qho_A | 686 | Alpha-amylase; glycoside hydrolase, starch degrada | 100.0 | |
| 1mxg_A | 435 | Alpha amylase; hyperthermostable, family 13 glycos | 100.0 | |
| 1g94_A | 448 | Alpha-amylase; beta-alpha-8-barrel, 3 domain struc | 100.0 | |
| 1jae_A | 471 | Alpha-amylase; glycosidase, carbohydrate metabolis | 100.0 | |
| 3czg_A | 644 | Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; | 100.0 | |
| 1cyg_A | 680 | Cyclodextrin glucanotransferase; glycosyltransfera | 100.0 | |
| 1gcy_A | 527 | Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b | 100.0 | |
| 1g5a_A | 628 | Amylosucrase; glycosyltransferase, glycoside hydro | 100.0 | |
| 1ht6_A | 405 | AMY1, alpha-amylase isozyme 1; barley, beta-alpha- | 100.0 | |
| 1wpc_A | 485 | Glucan 1,4-alpha-maltohexaosidase; maltohexaose-pr | 100.0 | |
| 1ud2_A | 480 | Amylase, alpha-amylase; calcium-free, alkaline, hy | 100.0 | |
| 3bh4_A | 483 | Alpha-amylase; calcium, carbohydrate metabolism, g | 99.98 | |
| 1jae_A | 471 | Alpha-amylase; glycosidase, carbohydrate metabolis | 99.98 | |
| 3ucq_A | 655 | Amylosucrase; thermostability, amylose synthesis, | 99.98 | |
| 3zss_A | 695 | Putative glucanohydrolase PEP1A; alpha-glucan bios | 99.98 | |
| 1hvx_A | 515 | Alpha-amylase; hydrolase, glycosyltransferase, the | 99.98 | |
| 1gcy_A | 527 | Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b | 99.97 | |
| 2dh2_A | 424 | 4F2 cell-surface antigen heavy chain; TIM-barrel, | 99.97 | |
| 3bc9_A | 599 | AMYB, alpha amylase, catalytic region; acarbose, t | 99.97 | |
| 1ht6_A | 405 | AMY1, alpha-amylase isozyme 1; barley, beta-alpha- | 99.97 | |
| 1g94_A | 448 | Alpha-amylase; beta-alpha-8-barrel, 3 domain struc | 99.97 | |
| 1mxg_A | 435 | Alpha amylase; hyperthermostable, family 13 glycos | 99.97 | |
| 1ua7_A | 422 | Alpha-amylase; beta-alpha-barrels, acarbose, greek | 99.97 | |
| 4gqr_A | 496 | Pancreatic alpha-amylase; glycosyl hydrolase, diab | 99.97 | |
| 1r7a_A | 504 | Sucrose phosphorylase; beta-alpha-barrels, dimer, | 99.96 | |
| 1r7a_A | 504 | Sucrose phosphorylase; beta-alpha-barrels, dimer, | 99.96 | |
| 4gqr_A | 496 | Pancreatic alpha-amylase; glycosyl hydrolase, diab | 99.94 | |
| 1iv8_A | 720 | Maltooligosyl trehalose synthase; beta alpha barre | 99.9 | |
| 3aie_A | 844 | Glucosyltransferase-SI; beta-alpha-barrels; HET: M | 99.86 | |
| 1iv8_A | 720 | Maltooligosyl trehalose synthase; beta alpha barre | 99.82 | |
| 3klk_A | 1039 | Glucansucrase; native form, open conformation, mul | 99.81 | |
| 3hje_A | 704 | 704AA long hypothetical glycosyltransferase; treha | 99.81 | |
| 3hje_A | 704 | 704AA long hypothetical glycosyltransferase; treha | 99.7 | |
| 3aie_A | 844 | Glucosyltransferase-SI; beta-alpha-barrels; HET: M | 99.68 | |
| 3klk_A | 1039 | Glucansucrase; native form, open conformation, mul | 99.61 | |
| 3ttq_A | 1108 | Dextransucrase; (beta/alpha)8 barrel, transferase; | 99.51 | |
| 3ttq_A | 1108 | Dextransucrase; (beta/alpha)8 barrel, transferase; | 99.01 | |
| 1z0n_A | 96 | 5'-AMP-activated protein kinase, beta-1 subunit; b | 98.62 | |
| 3mi6_A | 745 | Alpha-galactosidase; NESG, structural genomics, PS | 97.77 | |
| 1z0n_A | 96 | 5'-AMP-activated protein kinase, beta-1 subunit; b | 97.62 | |
| 3mi6_A | 745 | Alpha-galactosidase; NESG, structural genomics, PS | 97.52 | |
| 2yfo_A | 720 | Alpha-galactosidase-sucrose kinase agask; hydrolas | 97.48 | |
| 2yfo_A | 720 | Alpha-galactosidase-sucrose kinase agask; hydrolas | 97.46 | |
| 2xn2_A | 732 | Alpha-galactosidase; hydrolase, glycosidase; HET: | 96.9 | |
| 2qlv_B | 252 | Protein SIP2, protein SPM2; heterotrimer, ATP-bind | 96.82 | |
| 2xn2_A | 732 | Alpha-galactosidase; hydrolase, glycosidase; HET: | 96.81 | |
| 3nme_A | 294 | Ptpkis1 protein, SEX4 glucan phosphatase; dual spe | 96.81 | |
| 4fnq_A | 729 | Alpha-galactosidase AGAB; glycoside hydrolase, hyd | 96.35 | |
| 1zy9_A | 564 | Alpha-galactosidase; TM1192, struc genomics, joint | 95.93 | |
| 1zy9_A | 564 | Alpha-galactosidase; TM1192, struc genomics, joint | 95.92 | |
| 4fnq_A | 729 | Alpha-galactosidase AGAB; glycoside hydrolase, hyd | 95.67 | |
| 1qnr_A | 344 | Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt | 94.74 | |
| 1ur4_A | 399 | Galactanase; hydrolase, beta-1, glycoside hydrolas | 92.62 | |
| 3vmn_A | 643 | Dextranase; TIM barrel, immunoglobrin fold, greek- | 92.47 | |
| 3n9k_A | 399 | Glucan 1,3-beta-glucosidase; aromatic entranceway/ | 92.27 | |
| 3vmn_A | 643 | Dextranase; TIM barrel, immunoglobrin fold, greek- | 92.15 | |
| 1h4p_A | 408 | Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca | 91.05 | |
| 3n12_A | 333 | Chitinase A, chinctu2; zinc atoms, complex, hydrol | 90.66 | |
| 2f2h_A | 773 | Putative family 31 glucosidase YICI; BETA8alpha8 b | 90.54 | |
| 2g3m_A | 693 | Maltase, alpha-glucosidase; hydrolase, glycoside h | 90.45 | |
| 1hjs_A | 332 | Beta-1,4-galactanase; 4-galactanases, family 53 gl | 90.34 | |
| 2f2h_A | 773 | Putative family 31 glucosidase YICI; BETA8alpha8 b | 90.11 | |
| 2g3m_A | 693 | Maltase, alpha-glucosidase; hydrolase, glycoside h | 90.09 | |
| 1qnr_A | 344 | Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt | 89.43 | |
| 3l4y_A | 875 | Maltase-glucoamylase, intestinal; glycoside hydrol | 89.38 | |
| 3lpp_A | 898 | Sucrase-isomaltase; glycoside hydrolase family 31, | 89.28 | |
| 3lpp_A | 898 | Sucrase-isomaltase; glycoside hydrolase family 31, | 89.25 | |
| 1vjz_A | 341 | Endoglucanase; TM1752, structural genomics, JCSG, | 89.11 | |
| 3l4y_A | 875 | Maltase-glucoamylase, intestinal; glycoside hydrol | 88.58 | |
| 3nsx_A | 666 | Alpha-glucosidase; structural genomics, PSI-2, pro | 88.07 | |
| 3n12_A | 333 | Chitinase A, chinctu2; zinc atoms, complex, hydrol | 87.7 | |
| 3nsx_A | 666 | Alpha-glucosidase; structural genomics, PSI-2, pro | 87.31 | |
| 1ceo_A | 343 | Cellulase CELC; glycosyl hydrolase, family A/5 of | 86.76 | |
| 2z0b_A | 131 | GDE5, KIAA1434, putative glycerophosphodiester pho | 86.5 | |
| 1fob_A | 334 | Beta-1,4-galactanase; B/A barrel, glycosyl hydrola | 86.29 | |
| 4ba0_A | 817 | Alpha-glucosidase, putative, ADG31B; hydrolase; HE | 85.7 | |
| 4axn_A | 328 | Chitinase C1; hydrolase; 1.68A {Serratia marcescen | 85.28 | |
| 3ebv_A | 302 | Chinitase A; chitinase A, CHIA, glycosidase, struc | 85.26 | |
| 4ba0_A | 817 | Alpha-glucosidase, putative, ADG31B; hydrolase; HE | 85.04 | |
| 3pzg_A | 383 | Mannan endo-1,4-beta-mannosidase. glycosyl hydrol | 84.94 | |
| 2aam_A | 309 | Hypothetical protein TM1410; structural genomics, | 84.86 | |
| 1ac0_A | 108 | Glucoamylase; hydrolase, starch binding domain; HE | 84.02 | |
| 2y8k_A | 491 | Arabinoxylanase, carbohydrate binding family 6; hy | 83.58 | |
| 4axn_A | 328 | Chitinase C1; hydrolase; 1.68A {Serratia marcescen | 83.02 | |
| 1h4p_A | 408 | Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca | 82.58 | |
| 3nme_A | 294 | Ptpkis1 protein, SEX4 glucan phosphatase; dual spe | 82.03 | |
| 1x7f_A | 385 | Outer surface protein; structural genomics, unknow | 82.0 | |
| 3cc1_A | 433 | BH1870 protein, putative alpha-N-acetylgalactosami | 80.66 | |
| 1ur4_A | 399 | Galactanase; hydrolase, beta-1, glycoside hydrolas | 80.48 | |
| 3nco_A | 320 | Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1 | 80.02 |
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-76 Score=748.25 Aligned_cols=526 Identities=42% Similarity=0.739 Sum_probs=442.8
Q ss_pred hhhhHHHHHhhhccCCCCChhhhhHhhhccc-ccCCCCCccccccccccccCceeEEE-----EEEEEEEeecCCCCccc
Q psy9001 17 PEQLKYLVDECHKAGLFGTPEQLKYLVDECH-KAGLFGTPEQLKYLVDECHKAGLLCF-----MHVVCAAGDFNNWNREE 90 (1351)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~l~~l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~~~ 90 (1351)
|--.-|-..+.+++..| ++..+.|++.. .-+.|... -..++....+.||+|+ |++|+|+||||+|++..
T Consensus 18 ~~l~~~~~~~~~r~~~~---~~~~~~~~~~~~~~~~f~~~--~~~lGa~~~~~gv~F~vwAP~A~~V~l~gdfn~w~~~~ 92 (755)
T 3aml_A 18 PKLEEFKDHFNYRIKRY---LDQKCLIEKHEGGLEEFSKG--YLKFGINTVDGATIYREWAPAAQEAQLIGEFNNWNGAK 92 (755)
T ss_dssp GGGGGGHHHHHHHHHHH---HHHHHHHHHHHSCHHHHTTG--GGTSEEEEETTEEEEEEECTTCSEEEEEEGGGTTCCTT
T ss_pred CcchhhHHHHHHHHHHH---HHHHHHHHhcCCcHHHHhhh--hhcCceEEeCCeEEEEEECCCCCEEEEEEecCCCCCce
Confidence 33344556778888888 88888887543 34556543 2344555667899999 99999999999999989
Q ss_pred cceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEEecCCC-CccceeeeeeCCCCCCCCccC
Q psy9001 91 FAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPV-VGHAYEQRIWNPKPQDKHKWT 169 (1351)
Q Consensus 91 ~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~-~~~~~~~~~~~p~~~~~~~w~ 169 (1351)
++|++.++|+|+++||+. .|.+.+.+|++|+|+|.+.+|++..++||||++++.++. .+..+++++++|+...+|.|+
T Consensus 93 ~~m~~~~~GvW~~~v~~~-~g~~~i~~g~~Y~y~i~~~~g~~~~~~dpya~~~~~~~~~~~~~~~~~v~d~~~~~~~~w~ 171 (755)
T 3aml_A 93 HKMEKDKFGIWSIKISHV-NGKPAIPHNSKVKFRFRHGGGAWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFK 171 (755)
T ss_dssp CBCEECTTSEEEEEEECB-TTBCSSCTTEEEEEEEECTTCCCEEECCTTCSCEEECCSSSSCCEEEEECCCCGGGCCCCC
T ss_pred eeceeCCCCEEEEEEccc-ccccCCCCCCEEEEEEECCCCcEEecCCcchheEeecccccCcccceEEECCcccccCCCC
Confidence 999998889999999963 344457788999999998889888899999999998876 355667788887433469999
Q ss_pred CCCCCCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccc
Q psy9001 170 SSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEK 249 (1351)
Q Consensus 170 ~~~p~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~ 249 (1351)
+.+++.+.+++|||+|||+|+.+...|+|++|+++.|||||+||||+ ||||||| ++
T Consensus 172 ~~~~~~~~~~~IYE~hv~~~~~~~~~Gt~~~l~~~~L~yLk~LGvt~----I~L~Pi~--------------------e~ 227 (755)
T 3aml_A 172 HPRPPKPDAPRIYEAHVGMSGEEPEVSTYREFADNVLPRIRANNYNT----VQLMAIM--------------------EH 227 (755)
T ss_dssp SCCCCCCSSCEEEEEESTTCSSSSSCCCHHHHHHHTHHHHHHTTCCE----EEEESCE--------------------EC
T ss_pred CcCCCCCCCCEEEEEeeeccccCCCCCCHHHHHHHHHHHHHHcCCCE----EEECchh--------------------cC
Confidence 88877778999999999999988889999999986699999999999 9999944 43
Q ss_pred cccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHH
Q psy9001 250 TVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 329 (1351)
Q Consensus 250 ~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~ 329 (1351)
+... +|||++++|| +++ |+||+++|||+||++|
T Consensus 228 --~~~~-----~~GY~~~dy~---------------------a~~-------------------~~~Gt~~df~~lv~~~ 260 (755)
T 3aml_A 228 --SYYA-----SFGYHVTNFF---------------------AVS-------------------SRSGTPEDLKYLVDKA 260 (755)
T ss_dssp --SCGG-----GTTCSCSEEE---------------------EEC-------------------GGGCCHHHHHHHHHHH
T ss_pred --CCCC-----CCCCccCCCC---------------------ccC-------------------CCCCCHHHHHHHHHHH
Confidence 3333 4999999999 887 8999999999999999
Q ss_pred HHcCCEEEEEeeccccccCCcCCcccCC---CCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCc
Q psy9001 330 HKAGLYVLLDVVHSHASKNVLDGLNEFD---GTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDG 406 (1351)
Q Consensus 330 H~~GI~VILDvV~NH~~~~~~~~~~~f~---g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDG 406 (1351)
|++||+||||+|+||++.++.+++..|+ +..+.||+.++.+.+..|++++||+++|+||++|+++++||++||||||
T Consensus 261 H~~Gi~VilD~V~NH~~~~~~~g~~~fd~~~~~~~~yf~~~~~g~~~~w~~~~lN~~~p~V~~~l~~~l~~Wl~e~gvDG 340 (755)
T 3aml_A 261 HSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDG 340 (755)
T ss_dssp HHTTCEEEEEECCSCBCCCTTTSGGGGCSSCCGGGSSBCCGGGGEETTTTEECBCTTSHHHHHHHHHHHHHHHHHHCCCE
T ss_pred HHCCCEEEEEEeccccccccccchhccccCCCCCcceeecCCCCccCCCCCceeccCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 9999999999999999998877777777 6556788876667778899999999999999999999999999999999
Q ss_pred cccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCcccccccCCCCCCC
Q psy9001 407 FRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 486 (1351)
Q Consensus 407 fR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~ 486 (1351)
||||+|.+|++.+++.+.+|+..+..+++...|.+++.||+++++.+++.+|++++|||.|+++|.++.+...+|.||||
T Consensus 341 fR~Dav~~m~~~~~g~~~~f~~~~~~~~~~~~~~~ai~fl~~~~~~v~~~~p~~~lIaE~~~~~p~~~~~~~~gglgFd~ 420 (755)
T 3aml_A 341 FRFDGVTSMLYHHHGINKGFTGNYKEYFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDF 420 (755)
T ss_dssp EEETTHHHHHBTTTTTTCCCCSCGGGTSSTTBCHHHHHHHHHHHHHHHHHCTTCEEEECCSSCCTTTTSCGGGTSCCCSE
T ss_pred EEecchhhhhhcccCcccccccccccccccccchhHHHHHHHHHHHHHHHCCCeEEEEEccCCCccceeeccCCCccccc
Confidence 99999999998877776667666666778888999999999999999999999999999999999999988888889987
Q ss_pred cCC--cC---------------------------------------CCC---CC--------------------------
Q psy9001 487 RLE--IR---------------------------------------PDM---SD-------------------------- 496 (1351)
Q Consensus 487 ~~~--~~---------------------------------------~d~---~~-------------------------- 496 (1351)
+|+ |+ +|. ++
T Consensus 421 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~vnf~~nHD~~r~g~~~~~f~l~d~~~~~~~~~l~~~~~~~ 500 (755)
T 3aml_A 421 RLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTI 500 (755)
T ss_dssp EECTTHHHHHHHHHHHCCGGGCCHHHHHHHHHCSCTTSCEEECSCCCCTTSCCCBCHHHHHHTTHHHHSCBSSSCCCHHH
T ss_pred cccccchHHHHHHHhhCCccccCHHHHHHHHHhccCchhheehhhcCCccccccccccccccchhhhhhhhhccccchhh
Confidence 663 10 110 00
Q ss_pred ----------------------------------------------------------------CcHHHHHHHHHHhhhc
Q psy9001 497 ----------------------------------------------------------------MTVGTFDAAMNTTEER 512 (1351)
Q Consensus 497 ----------------------------------------------------------------~sl~~f~k~L~~Lr~~ 512 (1351)
+.|.+|+|+||+||++
T Consensus 501 ~~~~~~~k~a~~~llt~pG~P~lly~G~E~G~~~~~~~p~~g~~~~~~~~r~~W~~~~~~~~~~~~l~~~~r~Li~lRk~ 580 (755)
T 3aml_A 501 NRGIALQKMIHFITMALGGDGYLNFMGNEFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEE 580 (755)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEEETTGGGTCCSBCCCCCGGGTTCCTTSSCCHHHHHCTTBSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCCCEEEEeCchhcCCcCcccCcccCCCCCcccccCCcccccCccchhHHHHHHHHHHHHHHHh
Confidence 1256789999999999
Q ss_pred ccccccCCcceEeecCCCcEEEEEeCceEEEEeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEE
Q psy9001 513 FKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVV 592 (1351)
Q Consensus 513 ~~~L~~g~~~~~~~~~~~~Vlaf~R~~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~v 592 (1351)
+|+|+.|..++...+.+++|++|.|..+|||+||++.+.+.+|+ ||+|.+|+|++|
T Consensus 581 ~paL~~G~~~~~~~~~~~~vlaf~R~~llVv~N~s~~~~~~~~~------------------------i~vp~~g~~~~v 636 (755)
T 3aml_A 581 FSFLSSSKQIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGYK------------------------VGCDLPGKYRVA 636 (755)
T ss_dssp HCGGGCCCEEEEEEETTTTEEEEEETTEEEEEECCSSCCEEEEE------------------------EEESSCSEEEEE
T ss_pred ChhhcCCCEEEEeecCCCcEEEEEECCEEEEEECCCCCccceeE------------------------ECCCCCCeEEEE
Confidence 99999886566565667889999999999999999986677777 999999999999
Q ss_pred ccCCCCccCcccccCCCCceeee--------ecccCCcccEEEEEeCCcEEEEEEECCC
Q psy9001 593 LDSDCSHFGGFNRLDPGTVYETY--------PEPWNNRRNSIKLYLPTRTGLILTTSPG 643 (1351)
Q Consensus 593 lnsD~~~ygG~~~~~~~~~~~~~--------~~~~~g~~~si~l~LPpls~~vl~~~~~ 643 (1351)
||||+..|||++.++....+.+. +.+++|++++|.|+|||++++||+.+++
T Consensus 637 lnsd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lPp~s~~vl~~~~~ 695 (755)
T 3aml_A 637 LDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSPPRTCVAYYRVDE 695 (755)
T ss_dssp EETTSGGGTSCCCSCTTCCEECEECSCTTCGGGSBTTBSEEEEEEECTTEEEEEEECCT
T ss_pred EeCCccccCCccccCCccceecccccccccccccccCCCCeEEEEECCCEEEEEEEcCc
Confidence 99999999999887655455554 5789999999999999999999999763
|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-74 Score=725.93 Aligned_cols=454 Identities=30% Similarity=0.503 Sum_probs=390.1
Q ss_pred CceeEEE-----EEEEEEEeecCCCCccccceeec-CCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcc
Q psy9001 67 KAGLLCF-----MHVVCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140 (1351)
Q Consensus 67 ~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~-~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA 140 (1351)
.+||+|+ |++|+|+||||+|++..+||++. ++|+|+++||++.+| +.|+|+|++.+|++..++||||
T Consensus 135 ~~g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~GvW~~~i~~~~~g-------~~Y~y~i~~~~g~~~~~~DPya 207 (722)
T 3k1d_A 135 VSGVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVLGPSGVWELFWPDFPCD-------GLYKFRVHGADGVVTDRADPFA 207 (722)
T ss_dssp EEEEEEEEECTTCSEEEEEEGGGTTCCCSCBCEECGGGCEEEEEEETCCTT-------CEEEEEEECTTSCEEEECCTTC
T ss_pred CceEEEEEECCCCCEEEEEeecCCCCCCcccCEEcCCCCEEEEEeCCCCCC-------CEEEEEEEcCCCcEEEeecccc
Confidence 4689999 99999999999999999999985 469999999998766 5999999988999889999999
Q ss_pred eEEecCCC-CccceeeeeeCCCCCCCCccCCC-----CC---CCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHH
Q psy9001 141 TYVTEPPV-VGHAYEQRIWNPKPQDKHKWTSS-----KP---KKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVK 211 (1351)
Q Consensus 141 ~~~~~~~~-~~~~~~~~~~~p~~~~~~~w~~~-----~p---~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~ 211 (1351)
++++.++. +|+|.+ + .|.|++. ++ +..++++|||+|+|+|+.+ |+|+++++++|||||+
T Consensus 208 ~~~~~~~~~~s~v~~-----~----~~~w~d~~w~~~~~~~~~~~~~~~IYE~h~~s~~~~---G~~~~l~~~l~~yLk~ 275 (722)
T 3k1d_A 208 FGTEVPPQTASRVTS-----S----DYTWGDDDWMAGRALRNPVNEAMSTYEVHLGSWRPG---LSYRQLARELTDYIVD 275 (722)
T ss_dssp SSBCCTTCCCEECCC-----C----CCCCSCHHHHHHHTTCCGGGSCCEEEEECTTTSSTT---CCHHHHHHHHHHHHHH
T ss_pred eeeccCCCcceEEeC-----C----CCCCCchHHhhhccccccCCCCeEEEEEehhhccCC---CCHHHHHHHHHHHHHH
Confidence 99988775 455553 1 2566542 22 2457899999999999874 9999999996699999
Q ss_pred cCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcc
Q psy9001 212 QGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIID 291 (1351)
Q Consensus 212 LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~ 291 (1351)
||||+ ||||||+ ++ +..++ |||++++||
T Consensus 276 lG~t~----I~L~Pi~--------------------e~--~~~~~-----wGY~~~~y~--------------------- 303 (722)
T 3k1d_A 276 QGFTH----VELLPVA--------------------EH--PFAGS-----WGYQVTSYY--------------------- 303 (722)
T ss_dssp HTCSE----EEESCCE--------------------EC--SCGGG-----TTCSCSEEE---------------------
T ss_pred cCCCe----EEECCcc--------------------cC--CCCCC-----CCCCcccCc---------------------
Confidence 99999 9999944 44 44444 999999999
Q ss_pred cccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCC-CC
Q psy9001 292 RACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP-RG 370 (1351)
Q Consensus 292 a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~-~~ 370 (1351)
+++ ++||+++|||+||++||++||+||||+|+||++.+ .+++..|+|.. .|++.++ .+
T Consensus 304 a~~-------------------~~yGt~~dfk~lV~~~H~~GI~VilD~V~NH~~~~-~~~~~~fdg~~-~y~~~d~~~~ 362 (722)
T 3k1d_A 304 APT-------------------SRFGTPDDFRALVDALHQAGIGVIVDWVPAHFPKD-AWALGRFDGTP-LYEHSDPKRG 362 (722)
T ss_dssp EEC-------------------GGGCCHHHHHHHHHHHHHTTCEEEEEECTTCCCCC-TTTTTTTTSSC-CSBCCCCCSS
T ss_pred Ccc-------------------ccCCCHHHHHHHHHHHHHcCCEEEEEEEeeccCCc-cchhhcCCCCc-ccccCCcccC
Confidence 787 89999999999999999999999999999999987 56778888863 4444333 46
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHH
Q psy9001 371 THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVAN 450 (1351)
Q Consensus 371 ~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~ 450 (1351)
.+++|++.+||+++|+||++|+++++||+++|||||||||++.+|++.++++..+-+ ..+.++++.|.+++.||++++
T Consensus 363 ~~~~Wg~~~ln~~~p~Vr~~l~~~~~~Wl~~~gvDGfR~Dav~~mly~d~~r~~g~w--~~n~~gg~~n~~~~~fl~~l~ 440 (722)
T 3k1d_A 363 EQLDWGTYVFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASMLYLDYSRPEGGW--TPNVHGGRENLEAVQFLQEMN 440 (722)
T ss_dssp STTCCCCCCBCTTSHHHHHHHHHHHHHHHHHSCCCEEEECCTHHHHBCCCCCCSSCC--SCCCSSCSBCHHHHHHHHHHH
T ss_pred ccCCCCCeeecCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhhhcccccccccc--ccccCCCccChHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999998887765422 245678889999999999999
Q ss_pred HHHHhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCCCC----------------------------------
Q psy9001 451 KFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRPDM---------------------------------- 494 (1351)
Q Consensus 451 ~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~d~---------------------------------- 494 (1351)
+.+++.+|++++|||+|+++|.++++...+|+||+++|+ |+++.
T Consensus 441 ~~v~~~~P~~~~iaE~~t~~p~v~~~~~~gGlGfd~~wn~~~~~d~l~y~~~~~~~r~~~~~~lt~~~~ya~~e~f~l~~ 520 (722)
T 3k1d_A 441 ATAHKVAPGIVTIAEESTPWSGVTRPTNIGGLGFSMKWNMGWMHDTLDYVSRDPVYRSYHHHEMTFSMLYAFSENYVLPL 520 (722)
T ss_dssp HHHHHHSTTCEEEECCCSSCCCTTSCGGGTCCCCSEEECHHHHHHHHHHHHSCGGGGGGGHHHHHGGGGTTTSSCEEEEE
T ss_pred HHHHHhCCCeEEEEEecCCCcccccccccCCCccccccccchHHHHHHHHhcCchhhhhhhhccchhhhhhcccceeccc
Confidence 999999999999999999999999999999999999997 64321
Q ss_pred ---------------------------------------------C-------------------------CCcHHHHHH
Q psy9001 495 ---------------------------------------------S-------------------------DMTVGTFDA 504 (1351)
Q Consensus 495 ---------------------------------------------~-------------------------~~sl~~f~k 504 (1351)
+ ...+.+|+|
T Consensus 521 sHD~~~~Gk~~ll~~~~gd~~~~~a~lr~~~a~~lt~PG~plif~G~E~G~~~e~~~~~~l~W~~~~~~~~~~~l~~~~~ 600 (722)
T 3k1d_A 521 SHDEVVHGKGTLWGRMPGNNHVKAAGLRSLLAYQWAHPGKQLLFMGQEFGQRAEWSEQRGLDWFQLDENGFSNGIQRLVR 600 (722)
T ss_dssp CGGGSSTTSCCHHHHSCSSHHHHHHHHHHHHHHHHHSSSEEEEETTGGGTCCSCCCTTTCCCGGGGGSSSSHHHHHHHHH
T ss_pred CcchhccCccchhhhCCCcHHHHHHHHHHHHHHHHhCCCeeEEecccccccccccccccccCcccccCccccHHHHHHHH
Confidence 0 123578999
Q ss_pred HHHHhhhcccccccCC------cceEeecCCCcEEEEEeC-----ceEEEEeCCCCCcccccccccccCccccccccccc
Q psy9001 505 AMNTTEERFKWLSADP------GYVSTKHEGDKVIIFERA-----GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRG 573 (1351)
Q Consensus 505 ~L~~Lr~~~~~L~~g~------~~~~~~~~~~~Vlaf~R~-----~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1351)
+||+||+++|+|..++ .++...+.+++|++|.|. .+|||+||++. .+++|+
T Consensus 601 ~Ln~lR~~~paL~~~d~~~~gf~wi~~~d~~~~viaf~R~~~~~~~llvv~N~s~~-~~~~y~----------------- 662 (722)
T 3k1d_A 601 DINDIYRCHPALWSLDTTPEGYSWIDANDSANNVLSFMRYGSDGSVLACVFNFAGA-EHRDYR----------------- 662 (722)
T ss_dssp HHHHHHHHCGGGTTTTTSGGGEEEEEEEETTTTEEEEEEECTTSCEEEEEEECSSS-CEEEEE-----------------
T ss_pred HHHHHHHhChhhhccccCCCceEEEEccCCCCCEEEEEEEcCCCCEEEEEEeCCCC-CceeEE-----------------
Confidence 9999999999997542 233445557899999995 59999999998 666777
Q ss_pred ccccceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEE
Q psy9001 574 SISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTT 640 (1351)
Q Consensus 574 ~~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~ 640 (1351)
||+|.+|+|++|||||+..|||++.+|.+ .+.+++.+|||+++||+|+|||++++||++
T Consensus 663 -------igvp~~G~~~eilnsd~~~ygG~~~~~~~-~~~~~~~~~~g~~~s~~l~lpp~~~~~~~~ 721 (722)
T 3k1d_A 663 -------LGLPRAGRWREVLNTDATIYHGSGIGNLG-GVDATDDPWHGRPASAVLVLPPTSALWLTP 721 (722)
T ss_dssp -------EEESSCEEEEEEEETTCGGGTSCCCSCTT-EEEEESCCBTTBSEEEEEEECTTEEEEEEE
T ss_pred -------eccCCCCEEEEEeeCchhhcCCCCcCCCC-eEEEeeeccCCeeeEEEEEECCCEEEEEEE
Confidence 99999999999999999999999999886 578999999999999999999999999986
|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-68 Score=668.01 Aligned_cols=460 Identities=26% Similarity=0.449 Sum_probs=366.8
Q ss_pred ceeEEE-----EEEEEEEeecCCCCccccceee-cCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcce
Q psy9001 68 AGLLCF-----MHVVCAAGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWAT 141 (1351)
Q Consensus 68 ~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k-~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~ 141 (1351)
.||+|+ |++|+|+||||+|+...++|++ .++|+|+++||+...| .+|+|+|++.+|+...++||||+
T Consensus 25 ~gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~~~~GvW~~~v~~~~~g-------~~Y~f~i~~~~g~~~~~~DPya~ 97 (617)
T 1m7x_A 25 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNG-------QLYKYEMIDANGNLRLKSDPYAF 97 (617)
T ss_dssp EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCTTTTEEEEEEETCCTT-------CEEEEEEECTTSCEEEECCTTCS
T ss_pred CcEEEEEECCCCCEEEEEEEeCCCCCceeEeEECCCCCEEEEEEcCCCCC-------CEEEEEEEcCCCcEEEecCccce
Confidence 689999 9999999999999988899997 5789999999987655 69999999878988789999999
Q ss_pred EEecCCCCccceeeeeeCCCCCCCCccCCCC-C---CCCCCceEEEEecCCccCC---CCCCCHHHHHHhhhHHHHHcCC
Q psy9001 142 YVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-P---KKPDNLKIYESHVGICTQE---QKCASYEDFVRVVIPRIVKQGM 214 (1351)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~-p---~~~~~~vIYE~hvr~ft~~---~~~G~~~gi~~~~L~yLk~LGv 214 (1351)
.++.++.. .++++++. +|+|.++. + ...++++|||+|||+|+.. +..|+|+++++++|||||+|||
T Consensus 98 ~~~~~~~~----~s~v~~~~---~~~W~~~~~~~~~~~~~~~~iYei~~~~f~~~~~~g~~g~~~~i~~~ll~yl~~lGv 170 (617)
T 1m7x_A 98 EAQMRPET----ASLICGLP---EKVVQTEERKKANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGF 170 (617)
T ss_dssp SEECTTTC----EEECCCCC---CCCCCCHHHHHHHSTTSCCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTC
T ss_pred eeccCCCc----eEEEeCCC---CCCCCCccccCCCcccCCcEEEEEEHHHhcCCCCCCCccCHHHHHHHHHHHHHHcCC
Confidence 99887642 23344554 68998753 2 2347899999999999854 3478999999996699999999
Q ss_pred CcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhccccc
Q psy9001 215 AIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRAC 294 (1351)
Q Consensus 215 t~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~ 294 (1351)
|+ |||||||+ + +.. .+|||++.+|| +|+
T Consensus 171 ~~----i~l~Pi~~--------------------~--~~~-----~~~GY~~~~y~---------------------~~~ 198 (617)
T 1m7x_A 171 TH----LELLPINE--------------------H--PFD-----GSWGYQPTGLY---------------------APT 198 (617)
T ss_dssp SE----EEESCCEE--------------------C--SCG-----GGTTSSCSEEE---------------------EEC
T ss_pred CE----EEeccccc--------------------C--CCC-----CCCCcccccCC---------------------ccC
Confidence 99 99999553 3 322 34999999999 787
Q ss_pred ccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCC-CCCCC
Q psy9001 295 EKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP-RGTHP 373 (1351)
Q Consensus 295 ~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~-~~~~~ 373 (1351)
|+||+++|||+||++||++||+||||+|+||++.+ ..++..|+|.. .|++.++ .+.++
T Consensus 199 -------------------~~~Gt~~~~~~lv~~~H~~Gi~VilD~V~NH~~~~-~~~~~~~d~~~-~y~~~~~~~g~~~ 257 (617)
T 1m7x_A 199 -------------------RRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTD-DFALAEFDGTN-LYEHSDPREGYHQ 257 (617)
T ss_dssp -------------------GGGSCHHHHHHHHHHHHHTTCEEEEEECTTSCCCS-TTSSTTGGGSC-SSBCC--------
T ss_pred -------------------ccCCCHHHHHHHHHHHHHCCCEEEEEEecCcccCc-cchhhhcCCCc-cccccCcccCCcC
Confidence 89999999999999999999999999999999875 33455677652 3433332 45678
Q ss_pred CCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHH
Q psy9001 374 LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFL 453 (1351)
Q Consensus 374 ~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v 453 (1351)
+|++.+||+++|+||++|+++++||+++|||||||||++.+|++.++++..+.+ ..+.+++..+.++.+||+++++.+
T Consensus 258 ~w~~~~ln~~~p~v~~~i~~~~~~W~~~~gvDGfR~D~~~~~~~~d~~~~~g~~--~~~~~~~~~~~~~~~fl~~~~~~v 335 (617)
T 1m7x_A 258 DWNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEW--IPNEFGGRENLEAIEFLRNTNRIL 335 (617)
T ss_dssp ---CCCBCTTSHHHHHHHHHHHHHHHHHSCCCEEEECCSHHHHCC----------------CTTCCHHHHHHHHHHHHHH
T ss_pred CCCCceecCCCHHHHHHHHHHHHHHHHHhCcCEEEEcchhhhhhcccccccccc--ccccccccCCchHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999998776655433321 133445566778899999999999
Q ss_pred HhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCC--------------------------------------C
Q psy9001 454 HDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRP--------------------------------------D 493 (1351)
Q Consensus 454 ~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~--------------------------------------d 493 (1351)
++.+|++++|||.|+.+|.++.+...+|.|||+.|+ |++ |
T Consensus 336 ~~~~p~~~~iaE~~~~~~~~~~~~~~~g~gfd~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~fv~~~nHD 415 (617)
T 1m7x_A 336 GEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSHD 415 (617)
T ss_dssp HHSSTTCEEEECCSSCCTTTTBCTTTTBSCCSEEECHHHHHHHHHHHHSCGGGGGGCTHHHHGGGTTTTTSCEEEEECGG
T ss_pred HHHCCCeEEEEeCCCCCccceeeccCCCCccCcEeCCchHHHHHHHhccCccchhhhhccchhhhhcccccceEEEeCCC
Confidence 999999999999999999999888778888887765 310 0
Q ss_pred C------------------------------------------------C-------------------CCcHHHHHHHH
Q psy9001 494 M------------------------------------------------S-------------------DMTVGTFDAAM 506 (1351)
Q Consensus 494 ~------------------------------------------------~-------------------~~sl~~f~k~L 506 (1351)
. + ..++.+|+|+|
T Consensus 416 ~~~~g~~~~~~~~~g~~~~~~~~~r~a~~~~l~~pG~P~iy~G~E~G~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~L 495 (617)
T 1m7x_A 416 EVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDL 495 (617)
T ss_dssp GSSTTSCCHHHHSCSSHHHHHHHHHHHHHHHHHSSSEEEEETTTTTTCSSCCCTTSCCCGGGGCSSCCHHHHHHHHHHHH
T ss_pred CcccCccchhhhCCCcHHHHHHHHHHHHHHHHHCCCCcEEEcchhcCCCCCCCcccccChhhccccchhhHHHHHHHHHH
Confidence 0 0 02357899999
Q ss_pred HHhhhcccccccCCc------ceEeecCCCcEEEEEeC-----ceEEEEeCCCCCcccccccccccCccccccccccccc
Q psy9001 507 NTTEERFKWLSADPG------YVSTKHEGDKVIIFERA-----GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSI 575 (1351)
Q Consensus 507 ~~Lr~~~~~L~~g~~------~~~~~~~~~~Vlaf~R~-----~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1351)
|+||+++|+|+.+.. ++...+.+++|++|.|. .+|||+||++. .+++|+
T Consensus 496 ~~lR~~~~al~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~lvv~N~s~~-~~~~~~------------------- 555 (617)
T 1m7x_A 496 NLTYRHHKAMHELDFDPYGFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPV-PRHDYR------------------- 555 (617)
T ss_dssp HHHHTTCGGGTSCTTSGGGEEEEEEEETTTTEEEEEEECTTCCEEEEEEECSSC-CEEEEC-------------------
T ss_pred HHHHhhCHHhhcCCCCCCCeEEEeccCCCCeEEEEEEEcCCCCEEEEEECCCCC-CccceE-------------------
Confidence 999999999997632 22223457789999995 49999999997 666777
Q ss_pred ccceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEECC
Q psy9001 576 SKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTTSP 642 (1351)
Q Consensus 576 ~~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~~~ 642 (1351)
|++|.+|+|++|||||+..|||++..+.. .+.+++.+++++++++.|+|||++++||+.+.
T Consensus 556 -----i~~p~~g~~~~~l~sd~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~lpp~s~~vl~~~~ 616 (617)
T 1m7x_A 556 -----FGINQPGKWREILNTDSMHYHGSNAGNGG-TVHSDEIASHGRQHSLSLTLPPLATIWLVREA 616 (617)
T ss_dssp -----CBCSSCSEEEEEEETTSTGGGCCCCSCCS-CEECBSCCBTTBSCBCCEEECTTEEEEEEEEC
T ss_pred -----ECCCCCCeEEEEEeCcccccCCCCcCCCC-cccccccccCCCCceEEEEECCCEEEEEEEcC
Confidence 99999999999999999999999988874 57888999999999999999999999999753
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-66 Score=659.14 Aligned_cols=478 Identities=35% Similarity=0.638 Sum_probs=374.1
Q ss_pred ccCCceeehhchhhhhccchhhHHHHhhhccccceeecCCcEEEEeecCCccEEEEEe-cchhhhHHHhhcccccccccc
Q psy9001 666 LGDNGILLMMNYSSINSSIGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTG-YNAVQLMAIMEHAYYASFGYQ 744 (1351)
Q Consensus 666 ~~~~~~~~~~~~~~i~~~~~~~~~f~~~y~~~G~~~~~~~~~~~~~WaP~A~~v~l~~-~~~~~~~~~~~~~~~~~~~~~ 744 (1351)
|.++...+......|++++|++++|+++|+++|+|+..++ ++|++|||+|++|+|+| ||+|+
T Consensus 27 ~~~r~~~~~~~~~~~~~~~~~~~~f~~~~~~lGa~~~~~g-v~F~vwAP~A~~V~l~gdfn~w~---------------- 89 (755)
T 3aml_A 27 FNYRIKRYLDQKCLIEKHEGGLEEFSKGYLKFGINTVDGA-TIYREWAPAAQEAQLIGEFNNWN---------------- 89 (755)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHTTGGGTSEEEEETTE-EEEEEECTTCSEEEEEEGGGTTC----------------
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHhhhhhcCceEEeCCe-EEEEEECCCCCEEEEEEecCCCC----------------
Confidence 4456666677788899999999999999999999998655 99999999999999999 36531
Q ss_pred ccccccCCccccCCCCCCCCCCcccccccccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCcccccc
Q psy9001 745 VTSFFAASSRTMGNSQSVDPASIHIPELHKLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLER 823 (1351)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1351)
...++|++ +.|+| +++||+ .+|..-
T Consensus 90 ---------------------------------------~~~~~m~~~~~GvW--------------~~~v~~-~~g~~~ 115 (755)
T 3aml_A 90 ---------------------------------------GAKHKMEKDKFGIW--------------SIKISH-VNGKPA 115 (755)
T ss_dssp ---------------------------------------CTTCBCEECTTSEE--------------EEEEEC-BTTBCS
T ss_pred ---------------------------------------CceeeceeCCCCEE--------------EEEEcc-cccccC
Confidence 12367865 48999 777774 234334
Q ss_pred CCCCCCeEEEEEecCCceeeEEEecCcceEEEecCCCC-CeeeeeeeeCCCCCCCCccccCCCCCCCCceEEEeecCCcc
Q psy9001 824 DPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPVV-GHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICT 902 (1351)
Q Consensus 824 ~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~~~~~-~~~~d~~~~~p~~~~~~~w~~~~p~~p~d~iIYE~HV~~~s 902 (1351)
+++|..|+|+|...+| ++.+++||||+++++++.. +..++..+++|+..++|+|++++|++|.+++|||+|||.|+
T Consensus 116 i~~g~~Y~y~i~~~~g---~~~~~~dpya~~~~~~~~~~~~~~~~~v~d~~~~~~~~w~~~~~~~~~~~~IYE~hv~~~~ 192 (755)
T 3aml_A 116 IPHNSKVKFRFRHGGG---AWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSG 192 (755)
T ss_dssp SCTTEEEEEEEECTTC---CCEEECCTTCSCEEECCSSSSCCEEEEECCCCGGGCCCCCSCCCCCCSSCEEEEEESTTCS
T ss_pred CCCCCEEEEEEECCCC---cEEecCCcchheEeecccccCcccceEEECCcccccCCCCCcCCCCCCCCEEEEEeeeccc
Confidence 5688999999997777 6788999999999998763 66677777887644579999988777899999999999999
Q ss_pred cCCCcccccccccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCC
Q psy9001 903 QEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPN 982 (1351)
Q Consensus 903 ~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~ 982 (1351)
.++.+|+|+++++..||+||+|| |+. ||.+.
T Consensus 193 ~~~~~Gt~~~l~~~~L~yLk~LG-vt~--------------I~L~P---------------------------------- 223 (755)
T 3aml_A 193 EEPEVSTYREFADNVLPRIRANN-YNT--------------VQLMA---------------------------------- 223 (755)
T ss_dssp SSSSCCCHHHHHHHTHHHHHHTT-CCE--------------EEEES----------------------------------
T ss_pred cCCCCCCHHHHHHHHHHHHHHcC-CCE--------------EEECc----------------------------------
Confidence 88889999999987889999998 331 22222
Q ss_pred CCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCC
Q psy9001 983 PDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 1061 (1351)
Q Consensus 983 ~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~ 1061 (1351)
..++. ...+||| ++|||+++|+|||++|||+||++||++||+||||||+||++.+
T Consensus 224 -----------------i~e~~-------~~~~~GY~~~dy~a~~~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~ 279 (755)
T 3aml_A 224 -----------------IMEHS-------YYASFGYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNN 279 (755)
T ss_dssp -----------------CEECS-------CGGGTTCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSCBCCC
T ss_pred -----------------hhcCC-------CCCCCCCccCCCCccCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccccccc
Confidence 11111 1246899 9999999999999999999999999999999999999999999
Q ss_pred ccccCcCCC---CCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCC
Q psy9001 1062 VLDGLNEFD---GTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEG 1138 (1351)
Q Consensus 1062 ~~~~l~~~d---g~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~ 1138 (1351)
+..++..|+ +....||+.++.+.+..|++.+||++||+||++|+++++||++||||||||||+|.+|++.++|....
T Consensus 280 ~~~g~~~fd~~~~~~~~yf~~~~~g~~~~w~~~~lN~~~p~V~~~l~~~l~~Wl~e~gvDGfR~Dav~~m~~~~~g~~~~ 359 (755)
T 3aml_A 280 VTDGLNGYDVGQNTHESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKG 359 (755)
T ss_dssp TTTSGGGGCSSCCGGGSSBCCGGGGEETTTTEECBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTHHHHHBTTTTTTCC
T ss_pred cccchhccccCCCCCcceeecCCCCccCCCCCceeccCCHHHHHHHHHHHHHHHHHcCCCEEEecchhhhhhcccCcccc
Confidence 877777777 66678888776778888999999999999999999999999999999999999999999988887777
Q ss_pred CCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccc
Q psy9001 1139 FSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVE 1218 (1351)
Q Consensus 1139 ~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e 1218 (1351)
|++.+.++++...+.+++.||+++++.+++.+|++++|||+|+++|.+++++..+|+||||+|++.+
T Consensus 360 f~~~~~~~~~~~~~~~ai~fl~~~~~~v~~~~p~~~lIaE~~~~~p~~~~~~~~gglgFd~~~~~~~------------- 426 (755)
T 3aml_A 360 FTGNYKEYFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLAMAI------------- 426 (755)
T ss_dssp CCSCGGGTSSTTBCHHHHHHHHHHHHHHHHHCTTCEEEECCSSCCTTTTSCGGGTSCCCSEEECTTH-------------
T ss_pred cccccccccccccchhHHHHHHHHHHHHHHHCCCeEEEEEccCCCccceeeccCCCccccccccccc-------------
Confidence 7777777888888889999999999999999999999999999999999999889999999987522
Q ss_pred cCchhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCccccc-------
Q psy9001 1219 QAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMK------- 1291 (1351)
Q Consensus 1219 ~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~------- 1291 (1351)
...+++.++++...-..+.. +..... . ...|.+. |||++|||+.+.....+.
T Consensus 427 -~~~~~~~l~~~~~~~~~~~~----l~~~l~-----~------~~~~~~~-----vnf~~nHD~~r~g~~~~~f~l~d~~ 485 (755)
T 3aml_A 427 -PDRWIDYLKNKEDRKWSMSE----IVQTLT-----N------RRYTEKC-----IAYAESHDQSIVGDKTIAFLLMDKE 485 (755)
T ss_dssp -HHHHHHHHHHCCGGGCCHHH----HHHHHH-----C------SCTTSCE-----EECSCCCCTTSCCCBCHHHHHHTTH
T ss_pred -hHHHHHHHhhCCccccCHHH----HHHHHH-----h------ccCchhh-----eehhhcCCccccccccccccccchh
Confidence 12233444221100000000 000000 0 0112233 899999999875321110
Q ss_pred ------ccC--------CHHHHHHHHHHHHccCCccEE-Eee-cccCCC
Q psy9001 1292 ------RYI--------QTESNMNGFGIQTLPTQSPLY-LVA-KIEKPC 1324 (1351)
Q Consensus 1292 ------~~~--------~~~~~r~A~allltspGiP~I-f~g-~~~~~~ 1324 (1351)
.+. ..+++|+|++++||+||+|+| ||| |+..++
T Consensus 486 ~~~~~~~l~~~~~~~~~~~~~~k~a~~~llt~pG~P~lly~G~E~G~~~ 534 (755)
T 3aml_A 486 MYTGMSDLQPASPTINRGIALQKMIHFITMALGGDGYLNFMGNEFGHPE 534 (755)
T ss_dssp HHHSCBSSSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETTGGGTCCS
T ss_pred hhhhhhhccccchhhhhhHHHHHHHHHHHHHCCCCEEEEeCchhcCCcC
Confidence 000 236789999999999999977 999 777765
|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-57 Score=568.68 Aligned_cols=449 Identities=24% Similarity=0.367 Sum_probs=310.5
Q ss_pred HHHhhhccccceeecC---CcEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCC
Q psy9001 689 KFTTSYNKYGIHVQAD---NSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDP 764 (1351)
Q Consensus 689 ~f~~~y~~~G~~~~~~---~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (1351)
+..++|+.+|+++.++ ++++|++|||+|++|+|+|+ |+|+
T Consensus 6 ~~~~~~~~lGa~~~~~~~~~gv~F~vwAP~A~~V~L~gdfn~~~------------------------------------ 49 (617)
T 1m7x_A 6 THLRPYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWD------------------------------------ 49 (617)
T ss_dssp CCSCGGGTSEEEEEESSSCEEEEEEEECSSCSCEEEEEGGGTSC------------------------------------
T ss_pred ccccchhcCCceEeccCCcCcEEEEEECCCCCEEEEEEEeCCCC------------------------------------
Confidence 3457999999998863 46999999999999999993 5420
Q ss_pred CCcccccccccccCCCCCCcccccccc--ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCcee
Q psy9001 765 ASIHIPELHKLLERDPYLNPYQYEMKR--RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMV 842 (1351)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~m~~--~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 842 (1351)
...++|++ ..|+| +++|++...| ..|+|+|+..+|
T Consensus 50 -------------------~~~~~M~~~~~~GvW--------------~~~v~~~~~g-------~~Y~f~i~~~~g--- 86 (617)
T 1m7x_A 50 -------------------GRRHPMRLRKESGIW--------------ELFIPGAHNG-------QLYKYEMIDANG--- 86 (617)
T ss_dssp -------------------TTTCBCCCCTTTTEE--------------EEEEETCCTT-------CEEEEEEECTTS---
T ss_pred -------------------CceeEeEECCCCCEE--------------EEEEcCCCCC-------CEEEEEEEcCCC---
Confidence 12367864 48999 8888875554 667999987777
Q ss_pred eEEEecCcceEEEecCCC-CCeeeeeeeeCCCCCCCCccccCC-C---CCCCCceEEEeecCCcccCC---Ccccccccc
Q psy9001 843 NFLEQLSPWATYVTEPPV-VGHAYEQRIWNPKPQDKHKWTSSK-P---KKPENLKIYESHVGICTQEQ---KCASYEDFV 914 (1351)
Q Consensus 843 ~~~~~~dPya~~v~~~~~-~~~~~d~~~~~p~~~~~~~w~~~~-p---~~p~d~iIYE~HV~~~s~~~---~~gty~~f~ 914 (1351)
++..++||||+++..++. .++|+|. ++|+|+.+. | ..+++++|||+|||.|+.++ ..|+|.+++
T Consensus 87 ~~~~~~DPya~~~~~~~~~~s~v~~~--------~~~~W~~~~~~~~~~~~~~~~iYei~~~~f~~~~~~g~~g~~~~i~ 158 (617)
T 1m7x_A 87 NLRLKSDPYAFEAQMRPETASLICGL--------PEKVVQTEERKKANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELA 158 (617)
T ss_dssp CEEEECCTTCSSEECTTTCEEECCCC--------CCCCCCCHHHHHHHSTTSCCEEEEECTTSSCBCTTTCCBCCHHHHH
T ss_pred cEEEecCccceeeccCCCceEEEeCC--------CCCCCCCccccCCCcccCCcEEEEEEHHHhcCCCCCCCccCHHHHH
Confidence 577899999999998653 3444443 357898764 2 23478999999999999763 356888888
Q ss_pred cccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCc
Q psy9001 915 RVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQ 994 (1351)
Q Consensus 915 ~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~ 994 (1351)
++.+++||+|| ++ .++|+
T Consensus 159 ~~ll~yl~~lG-v~---------------~i~l~---------------------------------------------- 176 (617)
T 1m7x_A 159 DQLVPYAKWMG-FT---------------HLELL---------------------------------------------- 176 (617)
T ss_dssp HHHHHHHHHTT-CS---------------EEEES----------------------------------------------
T ss_pred HHHHHHHHHcC-CC---------------EEEec----------------------------------------------
Confidence 76668888877 23 22332
Q ss_pred ceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCC
Q psy9001 995 VKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ 1073 (1351)
Q Consensus 995 ~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~ 1073 (1351)
+..++ .+..+||| ++||++|+|+|||++|||+||++||++||+||||+|+||++.+. .++..+++..
T Consensus 177 ----Pi~~~-------~~~~~~GY~~~~y~~~~~~~Gt~~~~~~lv~~~H~~Gi~VilD~V~NH~~~~~-~~~~~~d~~~ 244 (617)
T 1m7x_A 177 ----PINEH-------PFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDD-FALAEFDGTN 244 (617)
T ss_dssp ----CCEEC-------SCGGGTTSSCSEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEEECTTSCCCST-TSSTTGGGSC
T ss_pred ----ccccC-------CCCCCCCcccccCCccCccCCCHHHHHHHHHHHHHCCCEEEEEEecCcccCcc-chhhhcCCCc
Confidence 11110 01136899 99999999999999999999999999999999999999998764 3555666653
Q ss_pred CccccCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCC
Q psy9001 1074 ACFFHDG-PRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 1152 (1351)
Q Consensus 1074 ~~yf~~~-~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d 1152 (1351)
+|++.+ ..+.+++|++.+||++||+||++|+++++||+++|||||||||++.+|++.++++..+.+ ..+.+|...+
T Consensus 245 -~y~~~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~~~~W~~~~gvDGfR~D~~~~~~~~d~~~~~g~~--~~~~~~~~~~ 321 (617)
T 1m7x_A 245 -LYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEW--IPNEFGGREN 321 (617)
T ss_dssp -SSBCC-----------CCCBCTTSHHHHHHHHHHHHHHHHHSCCCEEEECCSHHHHCC----------------CTTCC
T ss_pred -cccccCcccCCcCCCCCceecCCCHHHHHHHHHHHHHHHHHhCcCEEEEcchhhhhhcccccccccc--ccccccccCC
Confidence 333333 245678898889999999999999999999999999999999999999877666555543 3455666677
Q ss_pred hhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCC
Q psy9001 1153 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCS 1232 (1351)
Q Consensus 1153 ~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~ 1232 (1351)
.+++.||+++++.|++.+|++++|||+|.+++.+++++..+|.|||+.|+..+++. ....+.++.
T Consensus 322 ~~~~~fl~~~~~~v~~~~p~~~~iaE~~~~~~~~~~~~~~~g~gfd~~~n~~~~~~--------------~~~~~~~~~- 386 (617)
T 1m7x_A 322 LEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHD--------------TLDYMKLDP- 386 (617)
T ss_dssp HHHHHHHHHHHHHHHHSSTTCEEEECCSSCCTTTTBCTTTTBSCCSEEECHHHHHH--------------HHHHHHSCG-
T ss_pred chHHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeeccCCCCccCcEeCCchHHH--------------HHHHhccCc-
Confidence 88999999999999999999999999999999999998888999998887643320 111121110
Q ss_pred CCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccC-C-----HHHHHHHHHHH
Q psy9001 1233 HFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI-Q-----TESNMNGFGIQ 1306 (1351)
Q Consensus 1233 ~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~-~-----~~~~r~A~all 1306 (1351)
.++... ..+......+..... .++++|||+.++...++.... . .+++|+|++++
T Consensus 387 ~~~~~~---------------~~~l~~~~~~~~~~~-----fv~~~nHD~~~~g~~~~~~~~~g~~~~~~~~~r~a~~~~ 446 (617)
T 1m7x_A 387 VYRQYH---------------HDKLTFGILYNYTEN-----FVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWM 446 (617)
T ss_dssp GGGGGC---------------THHHHGGGTTTTTSC-----EEEEECGGGSSTTSCCHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred cchhhh---------------hccchhhhhcccccc-----eEEEeCCCCcccCccchhhhCCCcHHHHHHHHHHHHHHH
Confidence 000000 000000011111111 234589999865322322222 1 36789999999
Q ss_pred HccCCccEEEee-cccCCCCccceeeccCCcce
Q psy9001 1307 TLPTQSPLYLVA-KIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1307 ltspGiP~If~g-~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
||+||+|||||| |+...+... .++||+|..
T Consensus 447 l~~pG~P~iy~G~E~G~~~~~~--~~~~~~W~~ 477 (617)
T 1m7x_A 447 WAFPGKKLLFMGNEFAQGREWN--HDASLDWHL 477 (617)
T ss_dssp HHSSSEEEEETTTTTTCSSCCC--TTSCCCGGG
T ss_pred HHCCCCcEEEcchhcCCCCCCC--cccccChhh
Confidence 999999999999 777776544 368999985
|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-57 Score=567.10 Aligned_cols=444 Identities=24% Similarity=0.359 Sum_probs=331.2
Q ss_pred hhhccccceeec-C------CcEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCC
Q psy9001 692 TSYNKYGIHVQA-D------NSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVD 763 (1351)
Q Consensus 692 ~~y~~~G~~~~~-~------~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (1351)
+.|+++|+|... + ++|+|++|||+|++|+|+|+ |+|+
T Consensus 116 ~~~~~~gah~~~~~~~~~~~~g~~F~vwAP~A~~V~l~gdfn~w~----------------------------------- 160 (722)
T 3k1d_A 116 RLWEVLGAHPRSFTTADGVVSGVSFAVWAPNAKGVSLIGEFNGWN----------------------------------- 160 (722)
T ss_dssp TGGGTSEEEEEEEECSSSEEEEEEEEEECTTCSEEEEEEGGGTTC-----------------------------------
T ss_pred HHHHhcCCEEEeecCCcCCCceEEEEEECCCCCEEEEEeecCCCC-----------------------------------
Confidence 479999999752 2 24999999999999999994 6531
Q ss_pred CCCcccccccccccCCCCCCcccccccc-c-cccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCce
Q psy9001 764 PASIHIPELHKLLERDPYLNPYQYEMKR-R-YGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLM 841 (1351)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~m~~-~-~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 841 (1351)
...++|++ + .|+| +++||+...| ..|+|+|+..+|
T Consensus 161 --------------------~~~~~m~~~~~~GvW--------------~~~i~~~~~g-------~~Y~y~i~~~~g-- 197 (722)
T 3k1d_A 161 --------------------GHEAPMRVLGPSGVW--------------ELFWPDFPCD-------GLYKFRVHGADG-- 197 (722)
T ss_dssp --------------------CCSCBCEECGGGCEE--------------EEEEETCCTT-------CEEEEEEECTTS--
T ss_pred --------------------CCcccCEEcCCCCEE--------------EEEeCCCCCC-------CEEEEEEEcCCC--
Confidence 12367864 3 6999 8888876555 678999998888
Q ss_pred eeEEEecCcceEEEecCCCC-CeeeeeeeeCCCCCCCCccccC-----CC---CCCCCceEEEeecCCcccCCCcccccc
Q psy9001 842 VNFLEQLSPWATYVTEPPVV-GHAYEQRIWNPKPQDKHKWTSS-----KP---KKPENLKIYESHVGICTQEQKCASYED 912 (1351)
Q Consensus 842 ~~~~~~~dPya~~v~~~~~~-~~~~d~~~~~p~~~~~~~w~~~-----~p---~~p~d~iIYE~HV~~~s~~~~~gty~~ 912 (1351)
++.+++||||+++..++.. |+|++. .|+|+.+ ++ +.+++++|||+|||.|+.. |+|++
T Consensus 198 -~~~~~~DPya~~~~~~~~~~s~v~~~---------~~~w~d~~w~~~~~~~~~~~~~~~IYE~h~~s~~~~---G~~~~ 264 (722)
T 3k1d_A 198 -VVTDRADPFAFGTEVPPQTASRVTSS---------DYTWGDDDWMAGRALRNPVNEAMSTYEVHLGSWRPG---LSYRQ 264 (722)
T ss_dssp -CEEEECCTTCSSBCCTTCCCEECCCC---------CCCCSCHHHHHHHTTCCGGGSCCEEEEECTTTSSTT---CCHHH
T ss_pred -cEEEeecccceeeccCCCcceEEeCC---------CCCCCchHHhhhccccccCCCCeEEEEEehhhccCC---CCHHH
Confidence 6889999999999887543 555552 2445432 22 2347899999999999874 99999
Q ss_pred cccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCcccccc
Q psy9001 913 FVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHL 992 (1351)
Q Consensus 913 f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~ 992 (1351)
+++..+|+||++| |+. ++|+
T Consensus 265 l~~~l~~yLk~lG-~t~---------------I~L~-------------------------------------------- 284 (722)
T 3k1d_A 265 LARELTDYIVDQG-FTH---------------VELL-------------------------------------------- 284 (722)
T ss_dssp HHHHHHHHHHHHT-CSE---------------EEES--------------------------------------------
T ss_pred HHHHHHHHHHHcC-CCe---------------EEEC--------------------------------------------
Confidence 9987779999988 342 2322
Q ss_pred CcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCC
Q psy9001 993 SQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG 1071 (1351)
Q Consensus 993 ~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg 1071 (1351)
+..++ ....++|| ++||++++|+|||++|||+||++||++||+||||+|+||++.+. ..+..+++
T Consensus 285 ------Pi~e~-------~~~~~wGY~~~~y~a~~~~yGt~~dfk~lV~~~H~~GI~VilD~V~NH~~~~~-~~~~~fdg 350 (722)
T 3k1d_A 285 ------PVAEH-------PFAGSWGYQVTSYYAPTSRFGTPDDFRALVDALHQAGIGVIVDWVPAHFPKDA-WALGRFDG 350 (722)
T ss_dssp ------CCEEC-------SCGGGTTCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECTTCCCCCT-TTTTTTTS
T ss_pred ------CcccC-------CCCCCCCCCcccCcCccccCCCHHHHHHHHHHHHHcCCEEEEEEEeeccCCcc-chhhcCCC
Confidence 11110 11246789 89999999999999999999999999999999999999999875 56777887
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcC
Q psy9001 1072 TQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV 1151 (1351)
Q Consensus 1072 ~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~ 1151 (1351)
+..+.......+.++.|++.+||+++|+||++|+++++||+++|||||||||++.+|++.++++..+.| ..+.+|++.
T Consensus 351 ~~~y~~~d~~~~~~~~Wg~~~ln~~~p~Vr~~l~~~~~~Wl~~~gvDGfR~Dav~~mly~d~~r~~g~w--~~n~~gg~~ 428 (722)
T 3k1d_A 351 TPLYEHSDPKRGEQLDWGTYVFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASMLYLDYSRPEGGW--TPNVHGGRE 428 (722)
T ss_dssp SCCSBCCCCCSSSTTCCCCCCBCTTSHHHHHHHHHHHHHHHHHSCCCEEEECCTHHHHBCCCCCCSSCC--SCCCSSCSB
T ss_pred CcccccCCcccCccCCCCCeeecCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhhhcccccccccc--ccccCCCcc
Confidence 653332233356788999999999999999999999999999999999999999999999988877664 567788888
Q ss_pred ChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCC
Q psy9001 1152 DTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDC 1231 (1351)
Q Consensus 1152 d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~ 1231 (1351)
+.+++.||+++++.+++.+|++++|||+++++|.++++...+|+||+++|++...+ +. ...+..+
T Consensus 429 n~~~~~fl~~l~~~v~~~~P~~~~iaE~~t~~p~v~~~~~~gGlGfd~~wn~~~~~-------------d~-l~y~~~~- 493 (722)
T 3k1d_A 429 NLEAVQFLQEMNATAHKVAPGIVTIAEESTPWSGVTRPTNIGGLGFSMKWNMGWMH-------------DT-LDYVSRD- 493 (722)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTCEEEECCCSSCCCTTSCGGGTCCCCSEEECHHHHH-------------HH-HHHHHSC-
T ss_pred ChHHHHHHHHHHHHHHHhCCCeEEEEEecCCCcccccccccCCCccccccccchHH-------------HH-HHHHhcC-
Confidence 99999999999999999999999999999999999999999999999998863322 11 1111111
Q ss_pred CCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccC--C----HHHHHHHHHH
Q psy9001 1232 SHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI--Q----TESNMNGFGI 1305 (1351)
Q Consensus 1232 ~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~--~----~~~~r~A~al 1305 (1351)
..++.+.. ........|..+.. .+++.|||+......++.... . .+++|+++++
T Consensus 494 ~~~r~~~~---------------~~lt~~~~ya~~e~-----f~l~~sHD~~~~Gk~~ll~~~~gd~~~~~a~lr~~~a~ 553 (722)
T 3k1d_A 494 PVYRSYHH---------------HEMTFSMLYAFSEN-----YVLPLSHDEVVHGKGTLWGRMPGNNHVKAAGLRSLLAY 553 (722)
T ss_dssp GGGGGGGH---------------HHHHGGGGTTTSSC-----EEEEECGGGSSTTSCCHHHHSCSSHHHHHHHHHHHHHH
T ss_pred chhhhhhh---------------hccchhhhhhcccc-----eecccCcchhccCccchhhhCCCcHHHHHHHHHHHHHH
Confidence 00110000 00000011222222 567789998744333333322 1 3578999999
Q ss_pred HHccCCccEEEee-cccCCCCccceeeccCCccee
Q psy9001 1306 QTLPTQSPLYLVA-KIEKPCSTREVVKAPLPFGVR 1339 (1351)
Q Consensus 1306 lltspGiP~If~g-~~~~~~~~~~~~~~p~~~~~~ 1339 (1351)
+|+.||+|||||| |+...+... .+.+|+|...
T Consensus 554 ~lt~PG~plif~G~E~G~~~e~~--~~~~l~W~~~ 586 (722)
T 3k1d_A 554 QWAHPGKQLLFMGQEFGQRAEWS--EQRGLDWFQL 586 (722)
T ss_dssp HHHSSSEEEEETTGGGTCCSCCC--TTTCCCGGGG
T ss_pred HHhCCCeeEEecccccccccccc--cccccCcccc
Confidence 9999999999999 666654333 6789999864
|
| >2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-53 Score=538.07 Aligned_cols=475 Identities=15% Similarity=0.143 Sum_probs=314.7
Q ss_pred eehhchhhhhccchhhHHHHhhhccccceeecCCcEEEEeecCCccEEEEEecc-hhhhHHHhhcccccccccccccccc
Q psy9001 672 LLMMNYSSINSSIGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTGYN-AVQLMAIMEHAYYASFGYQVTSFFA 750 (1351)
Q Consensus 672 ~~~~~~~~i~~~~~~~~~f~~~y~~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1351)
.....+..+.++....++|+..- .+|+++..++ ++|++|||+|++|.|+++. +|
T Consensus 82 ~~~~~~~~~~~~~~~d~~~~y~~-~lGa~~~~~~-~~f~vwap~a~~V~l~~~~~~~----------------------- 136 (718)
T 2e8y_A 82 KTDLQIGAVIRTAAFDDEFYYDG-ELGAVYTADH-TVFKVWAPAATSAAVKLSHPNK----------------------- 136 (718)
T ss_dssp EEECEECGGGGSHHHHHHHCCCS-CCEEEECSSE-EEEEEECTTCSEEEEEEECTTS-----------------------
T ss_pred eecccccceeccccchhhcccCC-CCCCEEeCCc-EEEEEECCCCCEEEEEEEcCCC-----------------------
Confidence 33445566666653444454322 6999998665 9999999999999999952 10
Q ss_pred CCccccCCCCCCCCCCcccccccccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCC
Q psy9001 751 ASSRTMGNSQSVDPASIHIPELHKLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNP 829 (1351)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1351)
....++|++ +.|+| ++++++...| ..
T Consensus 137 --------------------------------~~~~~~m~~~~~g~w--------------~~~v~~~~~g-------~~ 163 (718)
T 2e8y_A 137 --------------------------------SGRTFQMTRLEKGVY--------------AVTVTGDLHG-------YE 163 (718)
T ss_dssp --------------------------------CCEEEECEECGGGEE--------------EEEEESCCTT-------CE
T ss_pred --------------------------------cceEEeCccCCCCEE--------------EEEECCCCCC-------Ce
Confidence 113477865 48999 8888876555 56
Q ss_pred eEEEEEecCCceeeEEEecCcceEEEecCCCCCeeeeeeeeCCCCCCCCccccCCCCCCCCceEEEeecCCcccCC----
Q psy9001 830 YQYEMKRRYGLMVNFLEQLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQ---- 905 (1351)
Q Consensus 830 y~~~~~~~~~~~~~~~~~~dPya~~v~~~~~~~~~~d~~~~~p~~~~~~~w~~~~p~~p~d~iIYE~HV~~~s~~~---- 905 (1351)
|+|+|.. +| ++..++||||++++.++.+++++|...++|+ +| .+.+..+++++|||+|||.|+.++
T Consensus 164 Y~f~v~~-~g---~~~~~~DPya~~~~~~~~~s~v~d~~~~~~~-----~w-~~~~~~~~~~viYei~v~~F~~~~~~g~ 233 (718)
T 2e8y_A 164 YLFCICN-NS---EWMETVDQYAKAVTVNGEKGVVLRPDQMKWT-----AP-LKPFSHPVDAVIYETHLRDFSIHENSGM 233 (718)
T ss_dssp EEEEEEE-TT---EEEEECCTTCSSBCGGGCSEECCCCCCCCCC-----CC-CCCCSCGGGCCEEEECHHHHHHSTTSCC
T ss_pred EEEEEEe-CC---eEEEecCCcccccccCCCcceEEcccccCCc-----cc-CCCCCChhhcEEEEEehHHhcCCCCCCC
Confidence 7999975 45 5788999999999999888988887655554 58 222234589999999999999653
Q ss_pred -CcccccccccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCC
Q psy9001 906 -KCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPD 984 (1351)
Q Consensus 906 -~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~ 984 (1351)
..|+|.++++.- .+++.++..++++|+++|++.++|+- .+.+. ..
T Consensus 234 ~~~G~~~g~~e~~------~~~l~Gi~~~LdyLk~LGvtaI~L~P-------i~~~~-------------------~~-- 279 (718)
T 2e8y_A 234 INKGKYLALTETD------TQTANGSSSGLAYVKELGVTHVELLP-------VNDFA-------------------GV-- 279 (718)
T ss_dssp SSTTSGGGGGCTT------CBCTTSCBCHHHHHHHHTCSEEEESC-------CEEES-------------------SS--
T ss_pred CCCCCeecccccc------ccccccchhhhHHHHHcCCCEEEECC-------ccccC-------------------cc--
Confidence 348888877531 13567777888899998886666551 11100 00
Q ss_pred CCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCC--------HHHHHHHHHHHHHcCCEEEEEeec
Q psy9001 985 GSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGT--------PEQLKYLVDECHKAGLYVLLDVVH 1055 (1351)
Q Consensus 985 ~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt--------~edfK~LV~~aH~~GI~VILDVV~ 1055 (1351)
...+ .....+||| ++||++++|+||+ ++|||+||++||++||+||||||+
T Consensus 280 ---------------de~~------~~~~~~wGYd~~dy~a~~~~yg~~p~~g~~~~~dfk~LV~~aH~~GI~VIlDvV~ 338 (718)
T 2e8y_A 280 ---------------DEEK------PLDAYNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTLHQHGLRVILDVVF 338 (718)
T ss_dssp ---------------CTTS------GGGCCCCCCSEEEEEEECSTTSSCSSSHHHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred ---------------cccc------ccccCcCCCCccCCCCcCcccccCCCCccccHHHHHHHHHHHHHCCCEEEEEEec
Confidence 0000 000125899 9999999999996 799999999999999999999999
Q ss_pred ccccCCccccCcCCCCCCCccccCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCC
Q psy9001 1056 SHASKNVLDGLNEFDGTQACFFHDGPRGTHPL--WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNH 1133 (1351)
Q Consensus 1056 NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~--w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~ 1133 (1351)
|||+.++..++.... +.+||+.++.|...+ +++++||++||+||++|+++++||++||||||||||+|.++
T Consensus 339 NHt~~~~~~~f~~~~--p~y~~~~~~~g~~~n~~~~g~dln~~np~Vr~~i~d~~~~Wl~e~gVDGfR~D~~~~~----- 411 (718)
T 2e8y_A 339 NHVYKRENSPFEKTV--PGYFFRHDECGKPSNGTGVGNDIASERRMARKFIADCVVYWLEEYNVDGFRFDLLGIL----- 411 (718)
T ss_dssp TCCSSGGGSHHHHHS--TTTSBCBCTTSSBCCTTSSSCCBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS-----
T ss_pred ccccCcccccccccC--CCeEEecCCCCcccCCCCcccccccCCHHHHHHHHHHHHHHHHHhCCCEEEEeccccC-----
Confidence 999998742333221 234555555554433 46789999999999999999999999999999999999877
Q ss_pred CCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCccccccccccccccccccc
Q psy9001 1134 GCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFP 1213 (1351)
Q Consensus 1134 g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~ 1213 (1351)
...+|+++++.+++.+|++++|||.|...+.+.......+ ++.+. |+
T Consensus 412 ---------------------~~~~~~~~~~~~~~~~p~~~ligE~w~~~~~~~~~~~~~~----~~~~~--------~~ 458 (718)
T 2e8y_A 412 ---------------------DIDTVLYMKEKATKAKPGILLFGEGWDLATPLPHEQKAAL----ANAPR--------MP 458 (718)
T ss_dssp ---------------------BHHHHHHHHHHHHHHSTTCEEEECCCCCCCSSCGGGBCCG----GGGGG--------CT
T ss_pred ---------------------CHHHHHHHHHHHHHhCCCeEEEEeecCCCCcccccccccc----ccccC--------CC
Confidence 3457899999999999999999999865333221110000 11001 11
Q ss_pred ccccccCchhHhhhccCC--CCCCCccccCCCcccccccCCcccc-cCcccccc---CCCCccceeeecccCCCCCcCCc
Q psy9001 1214 RVGVEQAGKYKVVLDSDC--SHFGGFNRLDPGTVYETYPEPWNNR-RNSIKLYL---PTRTGIIDEVNLLNNVREERNNE 1287 (1351)
Q Consensus 1214 ~~~~e~n~~~rd~l~~d~--~~~~gf~r~~~~~~~~~~~~~~~~r-~~s~~~y~---p~~~~~~~~vnfv~nHD~~rn~~ 1287 (1351)
..+.|++.+++.+.+.. ..-.+|.++......... .+ .++. .|. +....+...+||++|||+.|..
T Consensus 459 -~~~~~n~~~~~~~~~~~f~~~~~~f~~g~~~~~~~l~-----~~l~~~~-~~~~~~~~~~~~~~~vnfv~nHD~~rl~- 530 (718)
T 2e8y_A 459 -GIGFFNDMFRDAVKGNTFHLKATGFALGNGESAQAVM-----HGIAGSS-GWKALAPIVPEPSQSINYVESHDNHTFW- 530 (718)
T ss_dssp -TCEEECHHHHHHHHCCSSSTTCCCGGGTCGGGHHHHH-----HHHBTTS-CBTTBCCSSSSGGGEEECSCCSSSSCHH-
T ss_pred -ceEEEChHHHHHhhcccccccccceecCChhhHHHHH-----HHHhcCc-cccccccccCCcccEEEEEecCCCchHH-
Confidence 13567888888885311 001123222111000000 00 0000 010 0111122338999999987641
Q ss_pred cccccc-------CCHHHHHHHHHHHHccCCccEEEee-cccCCCC------ccceeeccCCcc
Q psy9001 1288 NNMKRY-------IQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCS------TREVVKAPLPFG 1337 (1351)
Q Consensus 1288 ~r~~~~-------~~~~~~r~A~allltspGiP~If~g-~~~~~~~------~~~~~~~p~~~~ 1337 (1351)
.++... .+.+++|+|++++||+||+|||||| |+..... .....+++++|.
T Consensus 531 ~~~~~~~~~~~~~~~~~~~kla~a~ll~~~G~P~iy~GdE~g~~~~g~~~~y~~~d~~~~~~W~ 594 (718)
T 2e8y_A 531 DKMSFALPQENDSRKRSRQRLAVAIILLAQGVPFIHSGQEFFRTKQGVENSYQSSDSINQLDWD 594 (718)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHHHHHTSBSEEEEETTGGGTCCCTTCSCCTTCCHHHHSCCHH
T ss_pred hhhhccCCCCCHHHHHHHHHHHHHHHHHCCCCcEEeechhhCccCCCCCcccCCCccccccCcc
Confidence 122111 1236889999999999999999999 5544322 123467889997
|
| >2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-53 Score=541.25 Aligned_cols=310 Identities=17% Similarity=0.207 Sum_probs=240.9
Q ss_pred cccccccCceeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceee
Q psy9001 60 YLVDECHKAGLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLD 134 (1351)
Q Consensus 60 ~l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~ 134 (1351)
.++.....+||+|+ |++|+|++++|+|....++|++.++|+|+++||+..+| ..|+|+|+. +|....
T Consensus 105 ~lGa~~~~~~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~~~g~w~~~v~~~~~g-------~~Y~f~v~~-~g~~~~ 176 (718)
T 2e8y_A 105 ELGAVYTADHTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRLEKGVYAVTVTGDLHG-------YEYLFCICN-NSEWME 176 (718)
T ss_dssp CCEEEECSSEEEEEEECTTCSEEEEEEECTTSCCEEEECEECGGGEEEEEEESCCTT-------CEEEEEEEE-TTEEEE
T ss_pred CCCCEEeCCcEEEEEECCCCCEEEEEEEcCCCcceEEeCccCCCCEEEEEECCCCCC-------CeEEEEEEe-CCeEEE
Confidence 35555667899999 99999999999898888999998889999999987655 699999996 677778
Q ss_pred ccCCcceEEecCCCCccceeeeeeCCCCCCCCccCCCCCCCCCCceEEEEecCCccCC-----CCCCCHHHHHHh-----
Q psy9001 135 RLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQE-----QKCASYEDFVRV----- 204 (1351)
Q Consensus 135 ~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~p~~~~~~vIYE~hvr~ft~~-----~~~G~~~gi~~~----- 204 (1351)
++||||+.+..++..+++++...++| .+| ...+.++++++|||+|||+|+.. ...|+|.+++++
T Consensus 177 ~~DPya~~~~~~~~~s~v~d~~~~~~-----~~w-~~~~~~~~~~viYei~v~~F~~~~~~g~~~~G~~~g~~e~~~~~l 250 (718)
T 2e8y_A 177 TVDQYAKAVTVNGEKGVVLRPDQMKW-----TAP-LKPFSHPVDAVIYETHLRDFSIHENSGMINKGKYLALTETDTQTA 250 (718)
T ss_dssp ECCTTCSSBCGGGCSEECCCCCCCCC-----CCC-CCCCSCGGGCCEEEECHHHHHHSTTSCCSSTTSGGGGGCTTCBCT
T ss_pred ecCCcccccccCCCcceEEcccccCC-----ccc-CCCCCChhhcEEEEEehHHhcCCCCCCCCCCCCeecccccccccc
Confidence 99999999987765666665332333 357 22223568999999999999732 245999999872
Q ss_pred -----hhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcc
Q psy9001 205 -----VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTH 279 (1351)
Q Consensus 205 -----~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~ 279 (1351)
.|||||+||||+ |||||||++.. ..|. .+. ..++|||++.+||
T Consensus 251 ~Gi~~~LdyLk~LGvta----I~L~Pi~~~~~--------------~de~-~~~----~~~~wGYd~~dy~--------- 298 (718)
T 2e8y_A 251 NGSSSGLAYVKELGVTH----VELLPVNDFAG--------------VDEE-KPL----DAYNWGYNPLHFF--------- 298 (718)
T ss_dssp TSCBCHHHHHHHHTCSE----EEESCCEEESS--------------SCTT-SGG----GCCCCCCSEEEEE---------
T ss_pred ccchhhhHHHHHcCCCE----EEECCccccCc--------------cccc-ccc----ccCcCCCCccCCC---------
Confidence 499999999999 99999665210 0010 010 1246999999999
Q ss_pred cccCCCCchhcccccccCCCCccccccccccccCCCCC--CHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCC
Q psy9001 280 MSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD 357 (1351)
Q Consensus 280 ~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G--~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~ 357 (1351)
+|+++|++. |.+| +++|||+||++||++||+||||+|+||++.++. ..|+
T Consensus 299 ------------a~~~~yg~~-------------p~~g~~~~~dfk~LV~~aH~~GI~VIlDvV~NHt~~~~~---~~f~ 350 (718)
T 2e8y_A 299 ------------APEGSYASN-------------PHDPQTRKTELKQMINTLHQHGLRVILDVVFNHVYKREN---SPFE 350 (718)
T ss_dssp ------------EECSTTSSC-------------SSSHHHHHHHHHHHHHHHHHTTCEEEEEECTTCCSSGGG---SHHH
T ss_pred ------------CcCcccccC-------------CCCccccHHHHHHHHHHHHHCCCEEEEEEecccccCccc---cccc
Confidence 787666543 5554 689999999999999999999999999998752 2344
Q ss_pred CCCCcC-cccCCCCCCCC--CCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccC
Q psy9001 358 GTQACF-FHDGPRGTHPL--WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 434 (1351)
Q Consensus 358 g~~~~y-y~~~~~~~~~~--w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~ 434 (1351)
+..+.| |+.++.+.+.+ +++++||++||+||++|+++++||++||||||||||+|..+
T Consensus 351 ~~~p~y~~~~~~~g~~~n~~~~g~dln~~np~Vr~~i~d~~~~Wl~e~gVDGfR~D~~~~~------------------- 411 (718)
T 2e8y_A 351 KTVPGYFFRHDECGKPSNGTGVGNDIASERRMARKFIADCVVYWLEEYNVDGFRFDLLGIL------------------- 411 (718)
T ss_dssp HHSTTTSBCBCTTSSBCCTTSSSCCBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS-------------------
T ss_pred ccCCCeEEecCCCCcccCCCCcccccccCCHHHHHHHHHHHHHHHHHhCCCEEEEeccccC-------------------
Confidence 443444 44444444433 34679999999999999999999999999999999999876
Q ss_pred CCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q psy9001 435 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 469 (1351)
Q Consensus 435 ~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~ 469 (1351)
..+||+++++.+++.+|++++|||.|..
T Consensus 412 -------~~~~~~~~~~~~~~~~p~~~ligE~w~~ 439 (718)
T 2e8y_A 412 -------DIDTVLYMKEKATKAKPGILLFGEGWDL 439 (718)
T ss_dssp -------BHHHHHHHHHHHHHHSTTCEEEECCCCC
T ss_pred -------CHHHHHHHHHHHHHhCCCeEEEEeecCC
Confidence 2458899999999999999999998864
|
| >2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-53 Score=545.97 Aligned_cols=307 Identities=20% Similarity=0.282 Sum_probs=244.3
Q ss_pred ccccccCceeEEE-----EEEEEEEeecCCCC---ccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCce
Q psy9001 61 LVDECHKAGLLCF-----MHVVCAAGDFNNWN---REEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHL 132 (1351)
Q Consensus 61 l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd---~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~ 132 (1351)
++......||+|+ |++|+|++ ||+|+ ...++|++.+.|+|+++||+..+| .+|+|+|+. +|..
T Consensus 318 lGa~~~~~gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g-------~~Y~y~v~~-~g~~ 388 (921)
T 2wan_A 318 LGNVYSKDATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKSDNGTWKLQVSGNLEN-------WYYLYQVTV-NGTT 388 (921)
T ss_dssp CEEEECSSEEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEECGGGEEEEEEESCCTT-------CEEEEEEEC-SSCE
T ss_pred ceeEEECCeEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeCCCCEEEEEEccCCCC-------CEEEEEEEe-CCeE
Confidence 4455567899999 99999996 99995 357999998789999999987655 699999995 5777
Q ss_pred eeccCCcceEEecCCCCccceeeeeeCCCCCCCCccCCCCCC---CCCCceEEEEecCCccCC-----CCCCCHHHHHHh
Q psy9001 133 LDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK---KPDNLKIYESHVGICTQE-----QKCASYEDFVRV 204 (1351)
Q Consensus 133 ~~~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~p~---~~~~~vIYE~hvr~ft~~-----~~~G~~~gi~~~ 204 (1351)
..++||||+.++.++..+++++...++ +++|+..+++ ++++++|||+|||+|+.. ...|+|.+++++
T Consensus 389 ~~~~DPya~~~~~~~~~s~v~d~~~~~-----~~~W~~~~~p~~~~~~~~vIYEihv~~F~~~~~~g~~~~Gt~~g~~e~ 463 (921)
T 2wan_A 389 QTAVDPYARAISVNATRGMIVDLKATD-----PAGWQGDHEQTPANPVDEVIYEAHVRDFSIDANSGMKNKGKYLAFTEH 463 (921)
T ss_dssp EEECCTTCSSBSGGGSSEECCCGGGGS-----CTTGGGCCCCCCSSGGGCCEEEECHHHHHCSTTSCCSSTTSGGGGGCC
T ss_pred EEecCCcceeeccCCCceEEEcccccC-----ccccccccCCCCCCchhcEEEEEEcCcccCCCCCCCCCCCCeeheecc
Confidence 789999999998877666666543333 3589765432 468999999999999732 245999998874
Q ss_pred ----------hhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccch
Q psy9001 205 ----------VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 274 (1351)
Q Consensus 205 ----------~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~ 274 (1351)
.|||||+||||+ |||||||++.. +.+. ....++|||++.+||
T Consensus 464 ~~~~l~Gi~~~LdyLk~LGvta----I~L~Pi~e~~~--------------~de~------~~~~~~wGYd~~dy~---- 515 (921)
T 2wan_A 464 GTKGPDHVKTGIDSLKELGITT----VQLQPVEEFNS--------------IDET------QPDTYNWGYDPRNYN---- 515 (921)
T ss_dssp SCBCGGGCBCHHHHHHHHTCCE----EEESCCEEESS--------------SCTT------STTSCCCCCSEEEEE----
T ss_pred ccccccccchhhHHHHHcCCCE----EEeCCccccCc--------------cccc------ccCcCCcCCCCcCCC----
Confidence 599999999999 99999665210 0000 001457999999999
Q ss_pred hhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCC--HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCC
Q psy9001 275 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGT--PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG 352 (1351)
Q Consensus 275 e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~--~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~ 352 (1351)
+|+++|++ || +|+ ++|||+||++||++||+||||||+||++.++.
T Consensus 516 -----------------ap~~~y~~-------------dp-~Gt~~~~dfk~LV~~aH~~GI~VILDvV~NHt~~~~~-- 562 (921)
T 2wan_A 516 -----------------VPEGAYAT-------------TP-EGTARITELKQLIQSLHQQRIGVNMDVVYNHTFDVMV-- 562 (921)
T ss_dssp -----------------EECGGGSS-------------CS-STTHHHHHHHHHHHHHHHTTCEEEEEECTTCCSCSSS--
T ss_pred -----------------CCCccccc-------------CC-CCCccHHHHHHHHHHHHHcCCEEEEEEcccccccccc--
Confidence 88866654 38 999 89999999999999999999999999999853
Q ss_pred cccCCCCCCcC-cccCCCCCCCCCC--CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCC
Q psy9001 353 LNEFDGTQACF-FHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGH 429 (1351)
Q Consensus 353 ~~~f~g~~~~y-y~~~~~~~~~~w~--~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~ 429 (1351)
..|++..+.| |+.++.+.+.+|. +++||++||+||++|+++++||++||||||||||+|..+
T Consensus 563 -~~f~~~~p~y~~~~~~~g~~~~~~g~~~dln~~~p~Vr~~i~d~l~~Wl~e~gVDGfR~Da~~~~-------------- 627 (921)
T 2wan_A 563 -SDFDKIVPQYYYRTDSNGNYTNGSGCGNEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFDLMALL-------------- 627 (921)
T ss_dssp -SHHHHHSTTTTBCBCTTSCBCCTTSSSCCBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGG--------------
T ss_pred -ccccCCCCCeEEEcCCCCcccCCCCcccccccCCHHHHHHHHHHHHHHHHHcCCCEEEecccccc--------------
Confidence 2355554544 4445555555443 478999999999999999999999999999999999876
Q ss_pred ccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q psy9001 430 YDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 469 (1351)
Q Consensus 430 ~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~ 469 (1351)
..+||+++++++++.+|++++|||.|..
T Consensus 628 ------------~~~~~~~~~~~l~~~~p~~~ligE~w~~ 655 (921)
T 2wan_A 628 ------------GKDTMAKISNELHAINPGIVLYGEPWTG 655 (921)
T ss_dssp ------------CHHHHHHHHHHHHHHCTTCEEEECSSCS
T ss_pred ------------CHHHHHHHHHHHHHhCCceEEEEecccC
Confidence 2468999999999999999999999864
|
| >2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=528.07 Aligned_cols=282 Identities=20% Similarity=0.276 Sum_probs=217.7
Q ss_pred cccccCceeEEE-----EEEEEEEeecCCCCc-cccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEe----cCCc
Q psy9001 62 VDECHKAGLLCF-----MHVVCAAGDFNNWNR-EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRN----QHGH 131 (1351)
Q Consensus 62 ~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~-~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~----~~g~ 131 (1351)
+....+.||+|+ |++|+|++ |+.+.. ..++|++.++|+|+++||+..+| ++|+|+|++ .+|.
T Consensus 13 Ga~~~~~g~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~~~g~w~~~v~~~~~g-------~~Y~y~v~~~~~p~~g~ 84 (657)
T 2wsk_A 13 GAHYDGQGVNFTLFSAHAERVELCV-FDANGQEHRYDLPGHSGDIWHGYLPDARPG-------LRYGYRVHGPWQPAEGH 84 (657)
T ss_dssp SEEECSSEEEEEEECSSCSEEEEEE-ECTTCCEEEEECCEEETTEEEEEEETCCTT-------CEEEEEEECCCCGGGTC
T ss_pred CcEEeCCeEEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCCCCCEEEEEECCCCCC-------CEEEEEEeeeecCccCc
Confidence 333456799999 99999998 887432 46899887789999999988765 599999997 3565
Q ss_pred ee----eccCCcceEEecCCCC-----------------ccceeeeeeCCCCCCCCccCCCCCC--CCCCceEEEEecCC
Q psy9001 132 LL----DRLSPWATYVTEPPVV-----------------GHAYEQRIWNPKPQDKHKWTSSKPK--KPDNLKIYESHVGI 188 (1351)
Q Consensus 132 ~~----~~~DPyA~~~~~~~~~-----------------~~~~~~~~~~p~~~~~~~w~~~~p~--~~~~~vIYE~hvr~ 188 (1351)
++ .++||||+++..+... .....+++++| .|+|++++++ ++++++|||+|||+
T Consensus 85 ~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~----~~~W~~~~~~~~~~~~~vIYei~v~~ 160 (657)
T 2wsk_A 85 RFNPAKLLIDPCARQIDGEFKDNPLLHAGHNEPDYRDNAAIAPKCVVVVD----HYDWEDDAPPRTPWGSTIIYEAHVKG 160 (657)
T ss_dssp CCCTTSCBCCTTCSCEESCCCCCGGGBCCSSSCCCCCCGGGSCEEECCCC----CCCCTTCCCCCCCGGGCCEEEECHHH
T ss_pred ccccceEEcCcCcceecCCccccccccccccccccccccccccceEEeCC----CCCCCCCCCCCCCchhcEEEEEEcce
Confidence 43 6899999999866321 11123556665 3899987653 57899999999999
Q ss_pred ccCC------CCCCCHHHHHHh-hhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccc
Q psy9001 189 CTQE------QKCASYEDFVRV-VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQAL 261 (1351)
Q Consensus 189 ft~~------~~~G~~~gi~~~-~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~ 261 (1351)
|+.. ...|||++|+++ +|||||+||||+ |||||||++. .+....+. ...++
T Consensus 161 F~~~~~~~~~~~~G~~~gi~~~~~l~yL~~LGvt~----i~L~Pi~~~~-----------~~~~~~~~-------g~~~~ 218 (657)
T 2wsk_A 161 LTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITA----LELLPVAQFA-----------SEPRLQRM-------GLSNY 218 (657)
T ss_dssp HHTTCTTSCGGGTTSHHHHTSHHHHHHHHHHTCCE----EEESCCEEEC-----------CCHHHHTT-------TCCCS
T ss_pred eeccCCCCCccCCcCHHHHhcccchHHHHHcCCCE----EEECCccccC-----------cccccccc-------ccccc
Confidence 9752 247999999986 799999999999 9999966521 00001111 12467
Q ss_pred cCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCC-----CHHHHHHHHHHHHHcCCEE
Q psy9001 262 VGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFG-----TPEQLKYLVDECHKAGLYV 336 (1351)
Q Consensus 262 wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G-----~~~efk~LV~~~H~~GI~V 336 (1351)
|||++++|| +++ ++|| +++|||+||++||++||+|
T Consensus 219 wGY~~~~y~---------------------~~~-------------------~~~G~~p~~~~~d~~~lv~~~H~~Gi~V 258 (657)
T 2wsk_A 219 WGYNPVAMF---------------------ALH-------------------PAYACSPETALDEFRDAIKALHKAGIEV 258 (657)
T ss_dssp SCCCEEEEE---------------------EEC-------------------GGGCSSGGGHHHHHHHHHHHHHHTTCEE
T ss_pred cCcCcccCC---------------------CCC-------------------HHHcCCCCcCHHHHHHHHHHHHHCCCEE
Confidence 999999999 888 6666 5899999999999999999
Q ss_pred EEEeeccccccCCcCCc-ccCCCCC-CcCcccCCCCCCCCCC--CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccc
Q psy9001 337 LLDVVHSHASKNVLDGL-NEFDGTQ-ACFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 412 (1351)
Q Consensus 337 ILDvV~NH~~~~~~~~~-~~f~g~~-~~yy~~~~~~~~~~w~--~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a 412 (1351)
|||||+||++.++.++. ..+.+.+ ..||+.++.+.+.+|. +++||+++|+||++|+++++||++||||||||||+|
T Consensus 259 ilD~V~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~d~~~~W~~e~gvDGfR~D~~ 338 (657)
T 2wsk_A 259 ILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLA 338 (657)
T ss_dssp EEEECCSCCTTCSTTSBCCSHHHHHHHHHBCBCTTSSBCCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTTCCCEEEETTT
T ss_pred EEEEeecccccccccCccccccCCCCccceEECCCCCeeCCCCcCCcccCCCHHHHHHHHHHHHHHHHHhCCcEEEEecc
Confidence 99999999999877653 2344333 3466655544444443 478999999999999999999999999999999999
Q ss_pred ccccc
Q psy9001 413 TSMLY 417 (1351)
Q Consensus 413 ~~~~~ 417 (1351)
..|..
T Consensus 339 ~~l~~ 343 (657)
T 2wsk_A 339 AVMGR 343 (657)
T ss_dssp HHHHB
T ss_pred ccccc
Confidence 98743
|
| >2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-53 Score=546.48 Aligned_cols=456 Identities=18% Similarity=0.226 Sum_probs=306.4
Q ss_pred HHHHh-hh--c--cccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCC
Q psy9001 688 EKFTT-SY--N--KYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSV 762 (1351)
Q Consensus 688 ~~f~~-~y--~--~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1351)
+.|.+ .| . .+|+++..++ ++|++|||+|++|.|++||+|+.
T Consensus 304 ~~~d~~~~~y~g~~lGa~~~~~g-v~F~vwaP~A~~V~l~lf~~~~~--------------------------------- 349 (921)
T 2wan_A 304 NVLNLPRYDYSGNDLGNVYSKDA-TSFRVWAPTASNVQLLLYNSEKG--------------------------------- 349 (921)
T ss_dssp GGGGSGGGCCCCSCCEEEECSSE-EEEEEECTTCSEEEEEEESSSSS---------------------------------
T ss_pred hhcccccccccCCCceeEEECCe-EEEEEECCCCCEEEEEEEeCCCC---------------------------------
Confidence 35665 43 3 3888987665 99999999999999999654200
Q ss_pred CCCCcccccccccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCce
Q psy9001 763 DPASIHIPELHKLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLM 841 (1351)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 841 (1351)
. ....++|++ +.|+| +++|++...| ..|+|+|+. +|
T Consensus 350 ----------------~---~~~~~~m~~~~~gvW--------------~~~v~~~~~g-------~~Y~y~v~~-~g-- 386 (921)
T 2wan_A 350 ----------------S---ITKQLEMQKSDNGTW--------------KLQVSGNLEN-------WYYLYQVTV-NG-- 386 (921)
T ss_dssp ----------------C---CSEEEECEECGGGEE--------------EEEEESCCTT-------CEEEEEEEC-SS--
T ss_pred ----------------C---cCeEEeCeeCCCCEE--------------EEEEccCCCC-------CEEEEEEEe-CC--
Confidence 0 113478865 48999 8888876555 567999985 45
Q ss_pred eeEEEecCcceEEEecCCCCCeeeeeeeeCCCCCCCCccccCC-CC--CCCCceEEEeecCCcccCC-----Cccccccc
Q psy9001 842 VNFLEQLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-PK--KPENLKIYESHVGICTQEQ-----KCASYEDF 913 (1351)
Q Consensus 842 ~~~~~~~dPya~~v~~~~~~~~~~d~~~~~p~~~~~~~w~~~~-p~--~p~d~iIYE~HV~~~s~~~-----~~gty~~f 913 (1351)
++..++||||++++.++.+++++|...++| ++|+.++ |. .+++++|||+|||.|+.++ ..|+|.++
T Consensus 387 -~~~~~~DPya~~~~~~~~~s~v~d~~~~~~-----~~W~~~~~p~~~~~~~~vIYEihv~~F~~~~~~g~~~~Gt~~g~ 460 (921)
T 2wan_A 387 -TTQTAVDPYARAISVNATRGMIVDLKATDP-----AGWQGDHEQTPANPVDEVIYEAHVRDFSIDANSGMKNKGKYLAF 460 (921)
T ss_dssp -CEEEECCTTCSSBSGGGSSEECCCGGGGSC-----TTGGGCCCCCCSSGGGCCEEEECHHHHHCSTTSCCSSTTSGGGG
T ss_pred -eEEEecCCcceeeccCCCceEEEcccccCc-----cccccccCCCCCCchhcEEEEEEcCcccCCCCCCCCCCCCeehe
Confidence 578899999999999988899998866654 4798665 42 3589999999999999653 34888887
Q ss_pred ccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccc-cCccceecCCccceeeecCCCCCCCcccccc
Q psy9001 914 VRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWN-REEFAYKKLDFGKWELVLPPNPDGSCKLTHL 992 (1351)
Q Consensus 914 ~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~-~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~ 992 (1351)
++.. .+++.++..++++|+++|++.++|+- .+.+. .++
T Consensus 461 ~e~~------~~~l~Gi~~~LdyLk~LGvtaI~L~P-------i~e~~~~de---------------------------- 499 (921)
T 2wan_A 461 TEHG------TKGPDHVKTGIDSLKELGITTVQLQP-------VEEFNSIDE---------------------------- 499 (921)
T ss_dssp GCCS------CBCGGGCBCHHHHHHHHTCCEEEESC-------CEEESSSCT----------------------------
T ss_pred eccc------cccccccchhhHHHHHcCCCEEEeCC-------ccccCcccc----------------------------
Confidence 7532 13566677778888888876666651 00000 000
Q ss_pred CcceeeecccCCCCCCCCCCcccccc-ccccccccCC-----CCC--HHHHHHHHHHHHHcCCEEEEEeecccccCCccc
Q psy9001 993 SQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGL-----FGT--PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 1064 (1351)
Q Consensus 993 ~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~-----yGt--~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~ 1064 (1351)
.+ ....+||| ++||++++++ +|+ ++|||+||++||++||+||||||+||++.++..
T Consensus 500 ---------~~-------~~~~~wGYd~~dy~ap~~~y~~dp~Gt~~~~dfk~LV~~aH~~GI~VILDvV~NHt~~~~~~ 563 (921)
T 2wan_A 500 ---------TQ-------PDTYNWGYDPRNYNVPEGAYATTPEGTARITELKQLIQSLHQQRIGVNMDVVYNHTFDVMVS 563 (921)
T ss_dssp ---------TS-------TTSCCCCCSEEEEEEECGGGSSCSSTTHHHHHHHHHHHHHHHTTCEEEEEECTTCCSCSSSS
T ss_pred ---------cc-------cCcCCcCCCCcCCCCCCcccccCCCCCccHHHHHHHHHHHHHcCCEEEEEEccccccccccc
Confidence 00 00125788 8888654444 666 899999999999999999999999999998732
Q ss_pred cCcCCCCCCC-ccccCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCC
Q psy9001 1065 GLNEFDGTQA-CFFHDGPRGTHPLW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSG 1141 (1351)
Q Consensus 1065 ~l~~~dg~~~-~yf~~~~~g~~~~w--~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~ 1141 (1351)
+ |++..+ +||+..+.+...+| |+++||++||+||++|+++++||++||||||||||+|.++
T Consensus 564 ~---f~~~~p~y~~~~~~~g~~~~~~g~~~dln~~~p~Vr~~i~d~l~~Wl~e~gVDGfR~Da~~~~------------- 627 (921)
T 2wan_A 564 D---FDKIVPQYYYRTDSNGNYTNGSGCGNEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFDLMALL------------- 627 (921)
T ss_dssp H---HHHHSTTTTBCBCTTSCBCCTTSSSCCBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGG-------------
T ss_pred c---ccCCCCCeEEEcCCCCcccCCCCcccccccCCHHHHHHHHHHHHHHHHHcCCCEEEecccccc-------------
Confidence 2 333323 45555555554444 5679999999999999999999999999999999999877
Q ss_pred CcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCC-CCccc---ccccCCccccccccccccccccccccccc
Q psy9001 1142 HYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM-PASCR---PVTEGGTGFDYRLGQYLHQHSILFPRVGV 1217 (1351)
Q Consensus 1142 ~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~-p~~~~---p~~~gg~GFdy~~~~~~h~~~~~f~~~~~ 1217 (1351)
...+|+++++.+++.+|++++|||.|... ..+.. +....+.| |+ .+
T Consensus 628 -------------~~~~~~~~~~~l~~~~p~~~ligE~w~~~~~~~~~~~~~~~~~~~g---------------f~--~~ 677 (921)
T 2wan_A 628 -------------GKDTMAKISNELHAINPGIVLYGEPWTGGTSGLSSDQLVTKGQQKG---------------LG--IG 677 (921)
T ss_dssp -------------CHHHHHHHHHHHHHHCTTCEEEECSSCSSCCSSCTTTSCCTTTTTT---------------TT--CE
T ss_pred -------------CHHHHHHHHHHHHHhCCceEEEEecccCCCcccccchhccccccCC---------------CC--eE
Confidence 34688999999999999999999998642 22211 11111112 22 35
Q ss_pred ccCchhHhhhccCC--CCCCCccccCCCcccccccCCcccc-cCccccccCCCCccceeeecccCCCCCcCCcccccccC
Q psy9001 1218 EQAGKYKVVLDSDC--SHFGGFNRLDPGTVYETYPEPWNNR-RNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI 1294 (1351)
Q Consensus 1218 e~n~~~rd~l~~d~--~~~~gf~r~~~~~~~~~~~~~~~~r-~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~ 1294 (1351)
.||+.+++++.+.. ..-.+|.++......... .+ ..+...|. ..+...+||++|||+.|.. .++....
T Consensus 678 ~~nd~~rd~~~~~~f~~~~~~f~~g~~~~~~~l~-----~~l~~~~~~~~---~~p~~~vnfv~nHD~~rl~-d~l~~~~ 748 (921)
T 2wan_A 678 VFNDNIRNGLDGNVFDKTAQGFATGDPNQVDVIK-----NGVIGSIQDFT---SAPSETINYVTSHDNMTLW-DKILASN 748 (921)
T ss_dssp EECHHHHHHHHCCTTCTTCCCTTTTCSSCHHHHH-----HHHBTTTTTTC---SSGGGEEECSCCSSSCCHH-HHHHHHC
T ss_pred EechHHHHHHhcccccccchhhhcCChhHHHHHH-----HHHhcchhhcc---cCcceeEEeeeccCCccHH-HHhhhhC
Confidence 68888898885321 011223322211111000 00 11111221 1122238999999987642 1111101
Q ss_pred -------CHHHHHHHHHHHHccCCccEEEee-cccCCCCc------cceeeccCCcce
Q psy9001 1295 -------QTESNMNGFGIQTLPTQSPLYLVA-KIEKPCST------REVVKAPLPFGV 1338 (1351)
Q Consensus 1295 -------~~~~~r~A~allltspGiP~If~g-~~~~~~~~------~~~~~~p~~~~~ 1338 (1351)
+.+++|+|++++||+||+|||||| |+.....- ....+++|+|..
T Consensus 749 ~~~~~~~~~~~~rla~a~llt~pG~P~iy~GdE~g~~~~g~~n~y~~~d~~~~~~W~~ 806 (921)
T 2wan_A 749 PSDTEADRIKMDELAHAVVFTSQGVPFMQGGEEMLRTKGGNDNSYNAGDSVNQFDWSR 806 (921)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSBSEEEEETTGGGTCCCTTCSCCTTCCHHHHSCCTHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCcEEEcchhhcccCCCCCcccCCcccccccCCcc
Confidence 236789999999999999999999 55554321 123578899973
|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-52 Score=517.93 Aligned_cols=420 Identities=18% Similarity=0.259 Sum_probs=295.6
Q ss_pred CCCCCccccccccccc-cCceeEEE-----EEEEEE-EeecCCCCc--cccceeecC----CCeEEEEcCCCCCCCcccC
Q psy9001 50 GLFGTPEQLKYLVDEC-HKAGLLCF-----MHVVCA-AGDFNNWNR--EEFAYKKLD----FGKWELVLPPNPDGSCKLT 116 (1351)
Q Consensus 50 ~~f~~~~~l~~l~~~~-~~~gv~F~-----A~~V~L-vGDFN~Wd~--~~~~M~k~~----~GvW~~~ip~~~~G~~~~~ 116 (1351)
.+||.| ...|+.... .+-.++|+ |++|+| +||||+|++ ..++|++.. .|+|+++||+...|
T Consensus 5 ~~~h~~-~~~~~~~~~~~~~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~~~~~~~w~~~i~~~~~~----- 78 (583)
T 1ea9_C 5 AVYHRP-RKNFSYAYNGTTVHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLATDELFDYWECEVTPPYRR----- 78 (583)
T ss_dssp GCBCCS-STTSSEESSSSCEECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEECSSCEEECCEECCTTSC-----
T ss_pred eEEecC-CCCceEecCCCEEEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEeccCCeEEEEEEEECCCce-----
Confidence 456666 334544332 23344555 889999 799999987 679999732 46799999987655
Q ss_pred cccEEEEEEEecCCceeeccCCcceEEecCCCCccceeeeeeCCCCCCCCccCCCCCCCCCCceEEEEecCCccCCC---
Q psy9001 117 HLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQ--- 193 (1351)
Q Consensus 117 ~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~p~~~~~~vIYE~hvr~ft~~~--- 193 (1351)
..|+|+|+..++......||++... +...+.+++.....+. -.| ..|.++++.+|||+|+++|+..+
T Consensus 79 --~~Y~f~i~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~----~~~--~~~~W~~~~viYqi~~~~F~~~~~~~ 148 (583)
T 1ea9_C 79 --VKYGFLLQQGHEKRWMTEYDFLTEP--PANPDRLFEYPFINPV----DVF--QPPAWVKDAIFYQIFPERFANGDTRN 148 (583)
T ss_dssp --EEECBCCEETTEECCBCSSSBCSSC--CSCGGGSEEECCCCTT----TSC--CCCTHHHHCCCCEECSTTSCCCCSCS
T ss_pred --EEEEEEEEeCCEEEEEeCCCccccC--cccCCcceeeeeeccc----ccC--CCCcccccceEEEEchHHhcCCCCcc
Confidence 6999999976666667889988762 2223444432211221 012 12334589999999999995321
Q ss_pred ------------------CCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccC
Q psy9001 194 ------------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 255 (1351)
Q Consensus 194 ------------------~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~ 255 (1351)
..|+|+|++++ |||||+||||+ |||||||+ + +
T Consensus 149 ~~~~~~~w~~~~~~~~~~~~Gd~~gi~~~-LdyLk~LGvt~----I~L~Pi~~--------------------~--~--- 198 (583)
T 1ea9_C 149 DPEGTLPWGSADPTPSCFFGGDLQGVIDH-LDHLSKLGVNA----VYFTPLFK--------------------A--T--- 198 (583)
T ss_dssp CSSCCSCCCSSSCCCSSCCCCCHHHHHHT-HHHHHHHTCSE----EEECCCSS--------------------C--S---
T ss_pred CccccccccCCCCcccccCCcCHHHHHHh-hHHHHHcCCCE----EEECCCcc--------------------C--C---
Confidence 14899999998 99999999999 99999553 2 2
Q ss_pred CCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9001 256 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 335 (1351)
Q Consensus 256 s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~ 335 (1351)
.+|||+++||| +++ |+||+++|||+||++||++||+
T Consensus 199 ----~~~GYd~~dy~---------------------~id-------------------p~~Gt~~df~~lv~~~H~~Gi~ 234 (583)
T 1ea9_C 199 ----TNHKYDTEDYF---------------------QID-------------------PQFGDKDTLKKLVDLCHERGIR 234 (583)
T ss_dssp ----SSSTTSCSCTT---------------------CCC-------------------TTTCCHHHHHHHHHHHTTTTCE
T ss_pred ----CCCCcCccccc---------------------ccC-------------------cccCCHHHHHHHHHHHHHCCCE
Confidence 24999999999 777 9999999999999999999999
Q ss_pred EEEEeeccccccCCcCCcccC-CCCC---CcCcccCC--------CCCCCCCCC----ccCCCCCHHHHHHHHHHHHHHH
Q psy9001 336 VLLDVVHSHASKNVLDGLNEF-DGTQ---ACFFHDGP--------RGTHPLWDS----RLFNYSEIEVLRFLLSNLRWYL 399 (1351)
Q Consensus 336 VILDvV~NH~~~~~~~~~~~f-~g~~---~~yy~~~~--------~~~~~~w~~----~~ln~~~p~v~~~l~~~l~~W~ 399 (1351)
||||+|+||++.++.+..... .|.. ..||.... .+.+..|.. ++||++||+||++|+++++||+
T Consensus 235 VilD~V~NH~~~~~~~f~~~~~~g~~s~y~~~y~~~~~~~~~~~~~~~y~~~~~~~~~pdln~~~p~Vr~~l~~~~~~W~ 314 (583)
T 1ea9_C 235 VLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWI 314 (583)
T ss_dssp EEEECCCSBCCTTTHHHHHHHTTTTTCTTTTSSCBCSSSCCCTTSCCSBCBSSSCTTSBBCCTTSHHHHHHHHHHHHHHH
T ss_pred EEEEEccccCCCccHHHHHHHhcCCCCCccCceEecCCCCCCCCCCCCceecCCCCCcceeccCCHHHHHHHHHHHHHHH
Confidence 999999999998865422111 1111 22333211 123344443 4899999999999999999999
Q ss_pred HHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCccccccc
Q psy9001 400 DEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTE 479 (1351)
Q Consensus 400 ~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~ 479 (1351)
++|||||||||+|..+ ..+||+++++++++.+|++++|||.|........
T Consensus 315 ~~~gvDGfR~D~~~~~--------------------------~~~f~~~~~~~v~~~~p~~~~igE~~~~~~~~~~---- 364 (583)
T 1ea9_C 315 RETGIDGWRLDVANEV--------------------------SHQFWREFRRVVKQANPDAYILGEVWHESSIWLE---- 364 (583)
T ss_dssp HHHCCSEEEETTCTTS--------------------------CHHHHHHHHHHHHHHCTTCEEEECCCSCCTTTTT----
T ss_pred HhcCceEEEecccccC--------------------------CHHHHHHHHHHHHhhCCCeEEEEEEcCChHHHhc----
Confidence 9999999999998766 2579999999999999999999997743211110
Q ss_pred CCCCCCCcCC----------------------------------------------------------------------
Q psy9001 480 GGTGFDYRLE---------------------------------------------------------------------- 489 (1351)
Q Consensus 480 gg~gfd~~~~---------------------------------------------------------------------- 489 (1351)
+.+|+..++
T Consensus 365 -~~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~nHD~~r~~~~~~~~~~~~~la~~~~ 443 (583)
T 1ea9_C 365 -GDQFDAVMNYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEVMFNLLDSHDTARLLTQADGDKRKMKLAVLFQ 443 (583)
T ss_dssp -TTSCSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHTTTTSCHHHHHTCEECSCCTTSCCHHHHHCSCHHHHHHHHHHH
T ss_pred -CCCcCEEECHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcchhhhhhheeecCCCCchhhhhhcCCcHHHHHHHHHHH
Confidence 111111111
Q ss_pred ------------------------------cCCCCCCCcHHHHHHHHHHhhhcccccccCCcceEee-cCCCcEEEEEeC
Q psy9001 490 ------------------------------IRPDMSDMTVGTFDAAMNTTEERFKWLSADPGYVSTK-HEGDKVIIFERA 538 (1351)
Q Consensus 490 ------------------------------~~~d~~~~sl~~f~k~L~~Lr~~~~~L~~g~~~~~~~-~~~~~Vlaf~R~ 538 (1351)
|.......++.+|+|+||+||+++|+|+.|. +..+. .++++|++|.|.
T Consensus 444 ~~~pG~P~iy~G~E~g~~~~~d~~~r~~~~W~~~~~~~~~~~~~~~Li~lRk~~~al~~g~-~~~~~~~~~~~v~af~R~ 522 (583)
T 1ea9_C 444 FTYFGTPCIYYGDEVGLDGGHDPGCRKCMEWDETKHDKDLFAFYQTVIRLRQAHAALRTGT-FKFLTAEKNSRQIAYLRE 522 (583)
T ss_dssp TTSSSEECCCSSCSSCCCCCSHHHHTCCCCCCTTSCCHHHHHHHHHHHHHHHHCSHHHHCC-CCCSBCCSSCCEEEEEEE
T ss_pred HcCCCCcEEEeccccCccCCCChhhcCCcCCCCCCCcHHHHHHHHHHHHHhhhChHhccCc-eEEEeeCCCCCEEEEEEE
Confidence 1100012357899999999999999998774 33332 224789999995
Q ss_pred ----ceEEEEeCCCCCcccccccccccCcccccccccccccccceEeeeccC-CceEEEccCCCCccCcccccCCCCcee
Q psy9001 539 ----GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQA-GKYKVVLDSDCSHFGGFNRLDPGTVYE 613 (1351)
Q Consensus 539 ----~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-g~~~~vlnsD~~~ygG~~~~~~~~~~~ 613 (1351)
.++||+|+++. . ++ |.+|.. +.|+.+++++.. .
T Consensus 523 ~~~~~~lvv~N~~~~-~---~~------------------------v~lp~~~~~~~~~l~~~~~--------------~ 560 (583)
T 1ea9_C 523 DDQDTILVVMNNDKA-G---HT------------------------LTLPVRHAQWTHLWQDDVL--------------T 560 (583)
T ss_dssp CSSCEEEEEEECSSS-C---EE------------------------EEEECCSSSCCEEBSTTCC--------------E
T ss_pred cCCCEEEEEEECCCC-C---EE------------------------EEecCCCceEEEeccCCcE--------------E
Confidence 79999999987 2 23 666654 678888864321 0
Q ss_pred eeecccCCcccEEEEEeCCcEEEEEEE
Q psy9001 614 TYPEPWNNRRNSIKLYLPTRTGLILTT 640 (1351)
Q Consensus 614 ~~~~~~~g~~~si~l~LPpls~~vl~~ 640 (1351)
. .. ..+.|+|||.+++||+.
T Consensus 561 ~----~~---~~~~~~l~p~~~~v~~~ 580 (583)
T 1ea9_C 561 A----AH---GQLTVKLPAYGFAVLKA 580 (583)
T ss_dssp E----CC---CSSEEEEEECSSCCCEE
T ss_pred e----cC---CEEEEEECCCEEEEEEE
Confidence 0 01 12568999999999875
|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-51 Score=509.96 Aligned_cols=416 Identities=15% Similarity=0.194 Sum_probs=291.8
Q ss_pred cCCCCCccccccccccc-cCceeEEE-----EEEEEE-EeecCCCCc---cccceeecC----CCeEEEEcCCCCCCCcc
Q psy9001 49 AGLFGTPEQLKYLVDEC-HKAGLLCF-----MHVVCA-AGDFNNWNR---EEFAYKKLD----FGKWELVLPPNPDGSCK 114 (1351)
Q Consensus 49 ~~~f~~~~~l~~l~~~~-~~~gv~F~-----A~~V~L-vGDFN~Wd~---~~~~M~k~~----~GvW~~~ip~~~~G~~~ 114 (1351)
+.+||.| ...|+.... .+-.++|+ |++|+| +||||+|+. ..++|++.. .|+|+++||+...|
T Consensus 4 ~~~~h~~-~~~~~~~~~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~~~~~~~w~~~i~~~~~~--- 79 (585)
T 1wzl_A 4 EAIFHEA-KGSYAYPISETQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKR--- 79 (585)
T ss_dssp GGCBCCS-STTTEEEEETTEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSC---
T ss_pred hceEecC-CCCceeecCCCEEEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeecCCCEEEEEEEEECCCCe---
Confidence 3456666 445554433 22344555 789999 799999986 679999742 46799999987654
Q ss_pred cCcccEEEEEEEecCCceeeccCCcceEEecCCCCccceeeeeeCCCCCCCCccCC---CCCCCCCCceEEEEecCCccC
Q psy9001 115 LTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTS---SKPKKPDNLKIYESHVGICTQ 191 (1351)
Q Consensus 115 ~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~---~~p~~~~~~vIYE~hvr~ft~ 191 (1351)
..|+|+|++.+|+.+. .+|++...+.+. . .+++. | +.|.. ..|.++++.+|||+|++.|+.
T Consensus 80 ----~~Y~f~i~~~~g~~~~-~~~~~~~~~~~~-~-~~~~~----~-----~~~~~~~~~~~~W~~~~viYqi~~~~F~~ 143 (585)
T 1wzl_A 80 ----VKYVFLLTGPQGEAVY-FGETGFSAERSK-A-GVFQY----A-----YIHRSEVFTTPEWAKEAVIYQIFPERFAN 143 (585)
T ss_dssp ----EEEEEEEECTTSCEEE-EETTEEESSHHH-H-CCEEE----C-----CCCGGGSCCCCSGGGGCCEEEECGGGTCC
T ss_pred ----EEEEEEEEeCCCcEEE-EcCCcccccCCc-C-cceee----e-----eeccccccCCcchhccceEEEEcchhhcC
Confidence 6999999977676544 358877654211 1 12221 1 12322 223456899999999999953
Q ss_pred CC----------------------CCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccc
Q psy9001 192 EQ----------------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEK 249 (1351)
Q Consensus 192 ~~----------------------~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~ 249 (1351)
.+ ..|+|+|++++ |||||+||||+ |||||||+ +
T Consensus 144 ~~~~~~~~~~~~w~~~~~~~~~~f~~G~~~gi~~~-LdyLk~LGvt~----I~L~Pi~~--------------------~ 198 (585)
T 1wzl_A 144 GDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDR-LPYLEELGVTA----LYFTPIFA--------------------S 198 (585)
T ss_dssp CCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHT-HHHHHHHTCCE----EEECCCEE--------------------C
T ss_pred CCcccccccccccCccCCCcccccCCCCHHHHHHH-hHHHHHcCCCE----EEECCccc--------------------C
Confidence 21 14899999998 99999999999 99999553 2
Q ss_pred cccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHH
Q psy9001 250 TVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 329 (1351)
Q Consensus 250 ~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~ 329 (1351)
+ .+|||+++||| +++ |+||+++|||+||++|
T Consensus 199 --~-------~~~GYd~~dy~---------------------~id-------------------~~~Gt~~dfk~lv~~~ 229 (585)
T 1wzl_A 199 --P-------SHHKYDTADYL---------------------AID-------------------PQFGDLPTFRRLVDEA 229 (585)
T ss_dssp --S-------SSSCCSCSEEE---------------------EEC-------------------TTTCCHHHHHHHHHHH
T ss_pred --C-------CCCCcCccccc---------------------ccC-------------------cccCCHHHHHHHHHHH
Confidence 2 24999999999 777 9999999999999999
Q ss_pred HHcCCEEEEEeeccccccCCcCCcccC----CCCCCcCcccCC-------CCCCCCCC-----CccCCCCCHHHHHHHHH
Q psy9001 330 HKAGLYVLLDVVHSHASKNVLDGLNEF----DGTQACFFHDGP-------RGTHPLWD-----SRLFNYSEIEVLRFLLS 393 (1351)
Q Consensus 330 H~~GI~VILDvV~NH~~~~~~~~~~~f----~g~~~~yy~~~~-------~~~~~~w~-----~~~ln~~~p~v~~~l~~ 393 (1351)
|++||+||||+|+||++.++.+..... +.....||+... ...+..|. .++||++||+||++|++
T Consensus 230 H~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~~~y~~~~~~~~~~~~~~y~~~~~~~~~~pdln~~~~~vr~~l~~ 309 (585)
T 1wzl_A 230 HRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFD 309 (585)
T ss_dssp HTTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSCCSBCBSSSSCTTCBBBCTTSHHHHHHHHH
T ss_pred HHCCCEEEEEEcCCcCCCccHHHHHHHhcCCCCCccCceEecCCCCCCCCCCCeeEcccCCCCCCeeCcCCHHHHHHHHH
Confidence 999999999999999998875421100 111122333211 12334444 36899999999999999
Q ss_pred HHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCc
Q psy9001 394 NLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPAS 473 (1351)
Q Consensus 394 ~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~ 473 (1351)
+++||+ +|||||||||+|.++ ..+||+++++++++.+|++++|||.|......
T Consensus 310 ~~~~Wl-~~gvDGfR~D~a~~~--------------------------~~~f~~~~~~~v~~~~p~~~~igE~~~~~~~~ 362 (585)
T 1wzl_A 310 VARFWM-EQGIDGWRLDVANEV--------------------------DHAFWREFRRLVKSLNPDALIVGEIWHDASGW 362 (585)
T ss_dssp HHHHHH-HTTCCEEEETTGGGS--------------------------CHHHHHHHHHHHHHHCTTCEEEECCSSCCGGG
T ss_pred HHHHHH-hCCCeEEEEeccccC--------------------------CHHHHHHHHHHHHHHCCCEEEEEEecCchHHH
Confidence 999999 899999999998866 25799999999999999999999977432211
Q ss_pred ccccccCCCCCCCcCC--cC------------------------------------------CCC---------------
Q psy9001 474 CRPVTEGGTGFDYRLE--IR------------------------------------------PDM--------------- 494 (1351)
Q Consensus 474 ~~~~~~gg~gfd~~~~--~~------------------------------------------~d~--------------- 494 (1351)
.. +.+|+..++ |+ +|.
T Consensus 363 ~~-----~~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~nHD~~r~~~~~~~~~~~~~ 437 (585)
T 1wzl_A 363 LM-----GDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFR 437 (585)
T ss_dssp CS-----SSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHTTSCHHHHTTCEEESCCTTSCCHHHHTTTCHHHHH
T ss_pred hc-----CCCcCEEECHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcchhhhccceEecCCCCchhhHHhcCCcHHHHH
Confidence 11 111221111 00 111
Q ss_pred -----------------------------------------CCCcHHHHHHHHHHhhhcccccccCCcceEee-cCCCcE
Q psy9001 495 -----------------------------------------SDMTVGTFDAAMNTTEERFKWLSADPGYVSTK-HEGDKV 532 (1351)
Q Consensus 495 -----------------------------------------~~~sl~~f~k~L~~Lr~~~~~L~~g~~~~~~~-~~~~~V 532 (1351)
...++.+|+|+||+||+++|+|+.|. +..+. +++++|
T Consensus 438 ~a~~~~~~~pG~P~iy~G~E~g~~~~~d~~~r~~~~W~~~~~~~~l~~~~~~Li~lRk~~~al~~g~-~~~~~~~~~~~v 516 (585)
T 1wzl_A 438 LAVLFQMTYLGTPLIYYGDEIGMAGATDPDCLRPMIWEEKEQNRGLFEFYKELIRLRHRLASLTRGN-VRSWHADKQANL 516 (585)
T ss_dssp HHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCGGGSCHHHHHHHHHHHHHHHHCHHHHHCE-EEEEEEETTTTE
T ss_pred HHHHHHHhCCCCcEEEeecccCcCCCCCcccccCCCCCCCCCcHHHHHHHHHHHHHHhhCHHHcCCc-EEEEEeCCCCCE
Confidence 12356899999999999999998773 33332 335789
Q ss_pred EEEEeC----ceEEEEeCCCCCcccccccccccCcccccccccccccccceEeee--cc--CCceEEEccCCCCccCccc
Q psy9001 533 IIFERA----GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGV--EQ--AGKYKVVLDSDCSHFGGFN 604 (1351)
Q Consensus 533 laf~R~----~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v--~~--~g~~~~vlnsD~~~ygG~~ 604 (1351)
++|.|. .++||+|+++.+ . . |.+ +. .+.|+.+++++.
T Consensus 517 ~af~R~~~~~~~lvv~N~~~~~-~---~------------------------~~l~t~~~~~~~~~~~l~~~~------- 561 (585)
T 1wzl_A 517 YAFVRTVQDQHVGVVLNNRGEK-Q---T------------------------VLLQVPESGGKTWLDCLTGEE------- 561 (585)
T ss_dssp EEEEEEETTEEEEEEEECSSSC-E---E------------------------EEEECCGGGCSEEEETTTCCE-------
T ss_pred EEEEEEcCCCEEEEEEECCCCC-E---E------------------------EEeccccccCceEEEeecCCe-------
Confidence 999996 799999999862 2 1 333 22 357888775321
Q ss_pred ccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEE
Q psy9001 605 RLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTT 640 (1351)
Q Consensus 605 ~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~ 640 (1351)
+.. ....+.|+|||.+++||+.
T Consensus 562 -------~~~-------~~g~~~~~l~p~~~~v~~~ 583 (585)
T 1wzl_A 562 -------VHG-------KQGQLKLTLRPYQGMILWN 583 (585)
T ss_dssp -------EEC-------BTTEEEEEECTTCEEEEEC
T ss_pred -------Eee-------cCCEEEEEECCCEEEEEEe
Confidence 110 1125789999999999975
|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-51 Score=509.34 Aligned_cols=425 Identities=16% Similarity=0.191 Sum_probs=294.1
Q ss_pred cCCCCCccccccccccc-cCceeEEE-----EEEEEE-EeecCCCCc-----cccceeecC----CCeEEEEcCCCCCCC
Q psy9001 49 AGLFGTPEQLKYLVDEC-HKAGLLCF-----MHVVCA-AGDFNNWNR-----EEFAYKKLD----FGKWELVLPPNPDGS 112 (1351)
Q Consensus 49 ~~~f~~~~~l~~l~~~~-~~~gv~F~-----A~~V~L-vGDFN~Wd~-----~~~~M~k~~----~GvW~~~ip~~~~G~ 112 (1351)
..+||.| ...|+.... ++-.++|+ |++|+| +||||+|+. ..++|++.. .|+|+++||+...|
T Consensus 4 ~~~~h~~-~~~~~~~~~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~w~~~v~~~~~~- 81 (588)
T 1j0h_A 4 EAIYHRP-ADNFAYAYDSETLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDYWFAEVKPPYRR- 81 (588)
T ss_dssp GGCBCCS-STTTEEESSSSCEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEECSSEEEEEEEECCTTSC-
T ss_pred hceEecC-CCCceEecCCCEEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeecCCCeEEEEEEEECCCcE-
Confidence 3456666 345544333 33355565 789999 699999975 579999743 46799999987655
Q ss_pred cccCcccEEEEEEEecCCceeeccCCcceEEecCCCCccceeeeeeCCCCCCCCccCCC--CCCCCCCceEEEEecCCcc
Q psy9001 113 CKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSS--KPKKPDNLKIYESHVGICT 190 (1351)
Q Consensus 113 ~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~--~p~~~~~~vIYE~hvr~ft 190 (1351)
..|+|+|++.++......||++....... .+.+++. | .+.|.+. .+.+.++.+|||+|+++|+
T Consensus 82 ------~~Y~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~----~~~~~~~~~~~~W~~~~viYqi~~~~F~ 146 (588)
T 1j0h_A 82 ------LRYGFVLYSGEEKLVYTEKGFYFEVPTDD-TAYYFCF----P----FLHRVDLFEAPDWVKDTVWYQIFPERFA 146 (588)
T ss_dssp ------EEEEEEEEETTEEEEEETTEEESSCCCSC-STTSEEE----C----CCCGGGSCCCCGGGGGCCEEEECGGGTC
T ss_pred ------EEEEEEEEeCCEEEEEECCCccccCCccc-CCCceEe----e----eecccccCCCCccccccEEEEEcchhhc
Confidence 69999999766676778898865332111 2222221 1 1234332 2235689999999999995
Q ss_pred CCC---------------------CCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccc
Q psy9001 191 QEQ---------------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEK 249 (1351)
Q Consensus 191 ~~~---------------------~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~ 249 (1351)
..+ ..|+|+||+++ |||||+||||+ |||||||+ +
T Consensus 147 ~~~~~~~~~~~~~w~~~~~~~~~~~~G~~~gi~~~-LdyLk~LGvt~----I~L~Pi~~--------------------~ 201 (588)
T 1j0h_A 147 NGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDH-LDYLVDLGITG----IYLTPIFR--------------------S 201 (588)
T ss_dssp CSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHT-HHHHHHHTCCE----EEECCCEE--------------------C
T ss_pred CCCCCcCcccccccCCCCCcccccCCCCHHHHHHH-HHHHHHcCCCE----EEECCccc--------------------C
Confidence 321 25899999998 99999999999 99999553 2
Q ss_pred cccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHH
Q psy9001 250 TVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 329 (1351)
Q Consensus 250 ~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~ 329 (1351)
+ .+|||+++||| +++ |+||+++|||+||++|
T Consensus 202 --~-------~~~GYd~~dy~---------------------~id-------------------p~~Gt~~df~~lv~~~ 232 (588)
T 1j0h_A 202 --P-------SNHKYDTADYF---------------------EVD-------------------PHFGDKETLKTLIDRC 232 (588)
T ss_dssp --S-------SSSCCSCSEEE---------------------EEC-------------------TTTCCHHHHHHHHHHH
T ss_pred --C-------CCCCcCccccC---------------------ccC-------------------ccCCCHHHHHHHHHHH
Confidence 2 24999999999 777 9999999999999999
Q ss_pred HHcCCEEEEEeeccccccCCcCCccc----CCCCCCcCcccCC-------CCCCCCCC----CccCCCCCHHHHHHHHHH
Q psy9001 330 HKAGLYVLLDVVHSHASKNVLDGLNE----FDGTQACFFHDGP-------RGTHPLWD----SRLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 330 H~~GI~VILDvV~NH~~~~~~~~~~~----f~g~~~~yy~~~~-------~~~~~~w~----~~~ln~~~p~v~~~l~~~ 394 (1351)
|++||+||||+|+||++.++.+.... -++....||.... .+.+..|. .++||++||+||++|+++
T Consensus 233 H~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~dwy~~~~~~~~~~~~~~y~~~~~~~~~pdLn~~np~Vr~~l~~~ 312 (588)
T 1j0h_A 233 HEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDV 312 (588)
T ss_dssp HHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSSCSBCBSTTCTTSBBBCTTSHHHHHHHHHH
T ss_pred HHCCCEEEEEECcCcCcccchhHHHHHhcCCCCCcccccccccCCCCCCCCCCeEEecCCCCccccccCCHHHHHHHHHH
Confidence 99999999999999999876432100 0111122332211 11222221 368999999999999999
Q ss_pred HHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCC-----
Q psy9001 395 LRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG----- 469 (1351)
Q Consensus 395 l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~----- 469 (1351)
++||+++|||||||||+|..+ +.+||+++++++++.+|++++|||.|..
T Consensus 313 ~~~Wl~~~giDGfR~D~a~~~--------------------------~~~f~~~~~~~v~~~~p~~~~igE~~~~~~~~~ 366 (588)
T 1j0h_A 313 ATYWIREFDIDGWRLDVANEI--------------------------DHEFWREFRQEVKALKPDVYILGEIWHDAMPWL 366 (588)
T ss_dssp HHHHHHHHCCCEEEETTGGGS--------------------------CHHHHHHHHHHHHHHCTTCEEEECCSSCCGGGC
T ss_pred HHHHHHhcCCcEEEEeccccC--------------------------CHHHHHHHHHHHHHhCCCeEEEEEecCchhhhh
Confidence 999999999999999998865 3578999999999999999999997643
Q ss_pred --------------------------------------------------------------------------------
Q psy9001 470 -------------------------------------------------------------------------------- 469 (1351)
Q Consensus 470 -------------------------------------------------------------------------------- 469 (1351)
T Consensus 367 ~g~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~nHD~~r~~~~~~~~~~~~~~a~~~~ 446 (588)
T 1j0h_A 367 RGDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLHSYPNNVNEAAFNLLGSHDTSRILTVCGGDIRKVKLLFLFQ 446 (588)
T ss_dssp SSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTSCHHHHHTCBCBSCCTTSCCHHHHTTTCHHHHHHHHHHH
T ss_pred cCCCcCEEEChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccchhhhheeecCCCCCchhhhhcCCcHHHHHHHHHHH
Confidence
Q ss_pred -----CCCcccccccCCCCCC---CcCC--cCCCCCCCcHHHHHHHHHHhhhcccccccCCcceEeec-CCCcEEEEEeC
Q psy9001 470 -----MPASCRPVTEGGTGFD---YRLE--IRPDMSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKH-EGDKVIIFERA 538 (1351)
Q Consensus 470 -----~p~~~~~~~~gg~gfd---~~~~--~~~d~~~~sl~~f~k~L~~Lr~~~~~L~~g~~~~~~~~-~~~~Vlaf~R~ 538 (1351)
.|.|+++.|.|-.|.. .+-. |.......++.+|+|+||+||+++|+|+.|. +..+.. ++++|++|.|.
T Consensus 447 ~~~pG~P~iy~G~E~g~~~~~dp~~r~~~~W~~~~~~~~l~~~~~~Li~lRk~~~al~~g~-~~~~~~~~~~~v~a~~R~ 525 (588)
T 1j0h_A 447 LTFTGSPCIYYGDEIGMTGGNDPECRKCMVWDPMQQNKELHQHVKQLIALRKQYRSLRRGE-ISFLHADDEMNYLIYKKT 525 (588)
T ss_dssp HHSSSCCEEETTGGGTCCCCSTTGGGCCCCCCTTTSCHHHHHHHHHHHHHHHHCHHHHHCE-EEEECCSCTTTEEEEEEE
T ss_pred HhCCCCcEEEeecccCccCCCCccccCCcCCCCCCCcHHHHHHHHHHHHHHhhCHHHcCCc-EEEEEECCCCCEEEEEEE
Confidence 2222222222211100 0000 1111123357999999999999999998773 343332 26789999995
Q ss_pred ----ceEEEEeCCCCCcccccccccccCcccccccccccccccceEeeecc---CCceEEEccCCCCccCcccccCCCCc
Q psy9001 539 ----GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQ---AGKYKVVLDSDCSHFGGFNRLDPGTV 611 (1351)
Q Consensus 539 ----~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~g~~~~vlnsD~~~ygG~~~~~~~~~ 611 (1351)
.++||+|+++.+ . . |.+|. .+.|+.+++++...
T Consensus 526 ~~~~~~lvv~N~~~~~-~---~------------------------~~l~~~~~~~~~~~ll~~~~~~------------ 565 (588)
T 1j0h_A 526 DGDETVLVIINRSDQK-A---D------------------------IPIPLDARGTWLVNLLTGERFA------------ 565 (588)
T ss_dssp CSSCEEEEEEECSSSC-E---E------------------------EECCCCCSSEEEEETTTCCEEE------------
T ss_pred CCCCEEEEEEECCCCC-E---E------------------------EecCccccCceeEEeccCceee------------
Confidence 799999999872 2 1 44443 25688888643210
Q ss_pred eeeeecccCCcccEEEEEeCCcEEEEEEE
Q psy9001 612 YETYPEPWNNRRNSIKLYLPTRTGLILTT 640 (1351)
Q Consensus 612 ~~~~~~~~~g~~~si~l~LPpls~~vl~~ 640 (1351)
. . ...+.|+|||.+++||+.
T Consensus 566 --~----~---~~~~~~~l~p~~~~v~~~ 585 (588)
T 1j0h_A 566 --A----E---AETLCTSLPPYGFVLYAI 585 (588)
T ss_dssp --C----C---SSSCEEEECTTCEEEEEE
T ss_pred --c----c---CCeeEEEECCCEEEEEEE
Confidence 0 0 112568999999999975
|
| >3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-50 Score=516.77 Aligned_cols=323 Identities=20% Similarity=0.255 Sum_probs=234.2
Q ss_pred ccccccCce--eEEE-----EEEEEEEe-ecCCCCc--cccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCC
Q psy9001 61 LVDECHKAG--LLCF-----MHVVCAAG-DFNNWNR--EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHG 130 (1351)
Q Consensus 61 l~~~~~~~g--v~F~-----A~~V~LvG-DFN~Wd~--~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g 130 (1351)
|+......| |+|+ |++|.|++ |+++|+. ..++|.+..+|+|+++|+. .+|. +-.+|.+|+|+|+. .+
T Consensus 135 lGa~~~~~g~~v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~~gvW~~~v~~-~~G~-~~~~g~~Y~yrv~~-~~ 211 (877)
T 3faw_A 135 LGAVLNQDGSKVEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKNNKGVWQTILDT-KLGI-KNYTGYYYLYEIKR-GK 211 (877)
T ss_dssp CEEEECTTSSCEEEEEECTTCSEEEEEEEETTEEEEEEEEEECEECTTSEEEEEECG-GGTC-SCCTTCEEEEEEEE-TT
T ss_pred CCCEEeCCCCEEEEEEECCCCCEEEEEEEeCCCCccceeeeccccCCCCEEEEEECC-CCCC-ccCCCeEEEEEEee-CC
Confidence 445555566 9999 99999987 7887753 4689999889999999952 2220 11357899999984 46
Q ss_pred ceeeccCCcceEEecCC-C-C---ccceeeeeeCCCCCCCCccCC----CCC--CCCCCceEEEEecCCccCC-------
Q psy9001 131 HLLDRLSPWATYVTEPP-V-V---GHAYEQRIWNPKPQDKHKWTS----SKP--KKPDNLKIYESHVGICTQE------- 192 (1351)
Q Consensus 131 ~~~~~~DPyA~~~~~~~-~-~---~~~~~~~~~~p~~~~~~~w~~----~~p--~~~~~~vIYE~hvr~ft~~------- 192 (1351)
...+++||||+++.... . . .....+.++++. .+.|.+ ..| ..+++++|||+|||+|+..
T Consensus 212 ~~~~~~DPYA~~~~~~~~~~~~~~~~~~~s~vvd~~---~~~~~~~~~~~~p~~~~~~~~vIYElhvr~ft~~~~~~~~~ 288 (877)
T 3faw_A 212 DKVKILDPYAKSLAEWDSNTVNDDIKTAKAAFVNPS---QLGPQNLSFAKIANFKGRQDAVIYEAHVRDFTSDQSLDGKL 288 (877)
T ss_dssp EEEEECCTTCSCBCCCBGGGCCSSCCSCCEECCCGG---GSSCTTCCCCCCTTCCSGGGCEEEEECTTGGGCCGGGTTTC
T ss_pred ceeEecCccceeccccCcccccccccCCceEEeccc---ccCCCccccccCCCCCCccccEEEEEEchHhcCCCCCCccc
Confidence 66789999999986421 0 0 001123344443 234432 122 2468899999999999842
Q ss_pred -CCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCC-CCccccCccccccc
Q psy9001 193 -QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES-HDQALVGDKTIAFW 270 (1351)
Q Consensus 193 -~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s-~~~~~wGY~~~~y~ 270 (1351)
...|||++++++ |||||+||||+ ||||||+++.. ..+...... ...++ ...++|||++.+||
T Consensus 289 ~~~~Gt~~gl~~~-L~yLk~LGvta----V~L~Pi~~~~~---------~~e~~~~~~--~~~~~~~~~ynwGY~~~~~~ 352 (877)
T 3faw_A 289 KNQLGTFAAFSEK-LDYLQKLGVTH----IQLLPVLSYFY---------VNEMDKSRS--TAYTSSDNNYNWGYDPQSYF 352 (877)
T ss_dssp SSCTTSHHHHGGG-HHHHHHHTCSE----EEESCCBCBSS---------CBTTCCCCC--CSCCSSSCSCCCSCSBSCSS
T ss_pred cCCCCCHHHHHHH-HHHHHHcCCCE----EEEcchhcccc---------ccccccccc--ccccCCCCCCccCcCcCccc
Confidence 135999999998 99999999999 99999775210 001000000 11122 12345999999999
Q ss_pred ccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCc
Q psy9001 271 LMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL 350 (1351)
Q Consensus 271 ~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~ 350 (1351)
+++++|++... ...|+++|||+||++||++||+||||||+||++.++
T Consensus 353 ---------------------a~~~~yGt~p~-----------~~~~~~~efk~lV~~~H~~GI~VILDvV~NH~a~~~- 399 (877)
T 3faw_A 353 ---------------------ALSGMYSEKPK-----------DPSARIAELKQLIHDIHKRGMGVILDVVYNHTAKTY- 399 (877)
T ss_dssp ---------------------SBCSTTCSCTT-----------STTHHHHHHHHHHHHHHHTTCEEEEEECTTCCSCTH-
T ss_pred ---------------------cccccccCCCC-----------CcchHHHHHHHHHHHHHHcCCEEEEEEeeccccCcc-
Confidence 88855554200 123448999999999999999999999999999874
Q ss_pred CCcccCCCCCCcCccc-CCCCC-CCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCC
Q psy9001 351 DGLNEFDGTQACFFHD-GPRGT-HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSG 428 (1351)
Q Consensus 351 ~~~~~f~g~~~~yy~~-~~~~~-~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~ 428 (1351)
.|.+.++.||+. +..+. +..|+++++|+.+|+||++|+++++||++||||||||||+|..+
T Consensus 400 ----~~~~~~p~yy~~~~~dg~~~~~~~g~~ln~~~p~Vr~~i~d~l~~Wv~e~gVDGFRfD~a~~~------------- 462 (877)
T 3faw_A 400 ----LFEDIEPNYYHFMNEDGSPRESFGGGRLGTTHAMSRRVLVDSIKYLTSEFKVDGFRFDMMGDH------------- 462 (877)
T ss_dssp ----HHHTTSTTTSBCBCTTSCBCEETTEECBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS-------------
T ss_pred ----ccccCCCceeeeeCCCCCeeccCCCcccccCCHHHHHHHHHHHHHHHHHcCCcEEEEecCCcC-------------
Confidence 456666667653 44443 34577889999999999999999999999999999999999866
Q ss_pred CccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCC
Q psy9001 429 HYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVS 468 (1351)
Q Consensus 429 ~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~ 468 (1351)
+..||+.+...+++.+|++++|||.|.
T Consensus 463 -------------~~~~~~~~~~~~~~~~P~~~ligE~Wd 489 (877)
T 3faw_A 463 -------------DAAAIELAYKEAKAINPNMIMIGEGWR 489 (877)
T ss_dssp -------------BHHHHHHHHHHHHHHCTTCEEEECCCS
T ss_pred -------------CHHHHHHHHHHHHhhCCCcEEEEcccc
Confidence 346788888888889999999999886
|
| >2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-51 Score=528.93 Aligned_cols=507 Identities=16% Similarity=0.142 Sum_probs=304.8
Q ss_pred hhhccchhhHH-HH-hh-hccccceeecCCcEEEEeecCCccEEEEEecc--hhhhHHHhhccccccccccccccccCCc
Q psy9001 679 SINSSIGGIEK-FT-TS-YNKYGIHVQADNSVRCFEWAPSAQQLYLTGYN--AVQLMAIMEHAYYASFGYQVTSFFAASS 753 (1351)
Q Consensus 679 ~i~~~~~~~~~-f~-~~-y~~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (1351)
.+.+..|.|++ |+ .+ ...+|+++..++ ++|++|||+|++|+|++|. +|
T Consensus 276 ~~v~~~~~~d~~~~~~g~~~~lGa~~~~~g-v~F~vwAP~A~~V~L~l~d~~~~-------------------------- 328 (1083)
T 2fhf_A 276 TQVQTAGVLDDTYAAAAEALSYGAQLTDSG-VTFRVWAPTAQQVELVIYSADKK-------------------------- 328 (1083)
T ss_dssp EEEECHHHHHHHHHHHHHTSCCEEEEETTE-EEEEEECTTCSEEEEEEECTTCC--------------------------
T ss_pred eeeeccccccccccCCCCcCCceeEEECCe-EEEEEECCCCCEEEEEEEcCCCC--------------------------
Confidence 34455667776 33 22 347999998655 9999999999999999952 10
Q ss_pred cccCCCCCCCCCCcccccccccccCCCCCCcccccccc--ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeE
Q psy9001 754 RTMGNSQSVDPASIHIPELHKLLERDPYLNPYQYEMKR--RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQ 831 (1351)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~--~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 831 (1351)
....++|++ ..|+| ++++++...| ..|+
T Consensus 329 -----------------------------~~~~~~m~~~~~~GvW--------------~~~v~~~~~G-------~~Y~ 358 (1083)
T 2fhf_A 329 -----------------------------VIASHPMTRDSASGAW--------------SWQGGSDLKG-------AFYR 358 (1083)
T ss_dssp -----------------------------EEEEEECEECTTTCEE--------------EEEECGGGTT-------CEEE
T ss_pred -----------------------------ccceEECeECCCCCEE--------------EEEECCCCCC-------CEEE
Confidence 112467863 47999 8888877665 5678
Q ss_pred EEEEec---CCceeeEEEecCcceEEEecCCCCCeeeeeee--eCCCCCCCCccccCCCC---CC-CCc---eEEEeecC
Q psy9001 832 YEMKRR---YGLMVNFLEQLSPWATYVTEPPVVGHAYEQRI--WNPKPQDKHKWTSSKPK---KP-ENL---KIYESHVG 899 (1351)
Q Consensus 832 ~~~~~~---~~~~~~~~~~~dPya~~v~~~~~~~~~~d~~~--~~p~~~~~~~w~~~~p~---~p-~d~---iIYE~HV~ 899 (1351)
|+|+.. .| ......++||||+++..++.+++++|... |.| ++|+.++++ .| +++ +|||+|||
T Consensus 359 y~v~~~~p~~g-~~~~~~~~DPYa~~~~~~~~~s~v~d~~~~~~~p-----~~W~~~~~p~~~~~~~~~~~~vIYE~hvr 432 (1083)
T 2fhf_A 359 YAMTVYHPQSR-KVEQYEVTDPYAHSLSTNSEYSQVVDLNDSALKP-----EGWDGLTMPHAQKTKADLAKMTIHESHIR 432 (1083)
T ss_dssp EEEEEEETTTT-EEEEEEECCTTCSCBCGGGSSEECBCTTCGGGSC-----TTGGGCCCSSCCSSHHHHHTCEEEEECHH
T ss_pred EEEEeecCCCC-ccccceecCCccceeccCCCcceEecccccccCC-----cccccccCcccccccccccccEEEEEecc
Confidence 998741 34 12346899999999999988898887632 444 579988754 23 566 99999999
Q ss_pred CcccCC------Ccccccccccc---cccceeccCCCcccccccccccccCCceEEEecCCCCCCCCccc-ccCccceec
Q psy9001 900 ICTQEQ------KCASYEDFVRV---VIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNW-NREEFAYKK 969 (1351)
Q Consensus 900 ~~s~~~------~~gty~~f~~~---~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~-~~~~~~y~~ 969 (1351)
+||... ..|+|.+|++. .++||+ +|+.+|++.++|| +.+.| .+++..-..
T Consensus 433 ~ft~~~~~~~~~~~Gt~~g~~e~~~~~i~~L~-------------~L~~lGvt~i~Ll-------Pv~~~~~v~e~~~~~ 492 (1083)
T 2fhf_A 433 DLSAWDQTVPAELRGKYLALTAQESNMVQHLK-------------QLSASGVTHIELL-------PVFDLATVNEFSDKV 492 (1083)
T ss_dssp HHHTTCTTSCGGGTTSGGGGGCTTSHHHHHHH-------------HHHHHTCCEEEES-------CCEEESSSCCCGGGC
T ss_pred hhcCCCCCCCcCCCCChhhhhhhhhhhHHHHH-------------HHHhcCCCEEEEC-------Ccccccccccccccc
Confidence 999742 35888887763 233333 2334455555555 12332 122211000
Q ss_pred ----CCccceeeecCCC-------CCCCccccccCcceeeecccCCC--------CCC--CCCCcccccc-ccccccccC
Q psy9001 970 ----LDFGKWELVLPPN-------PDGSCKLTHLSQVKLVVRNQHGH--------LLD--RFGTPEQLKY-LVDECHKAG 1027 (1351)
Q Consensus 970 ----~d~gy~~~~~pp~-------~~~~~~i~d~~~~~l~~~~~~G~--------~~~--~~~sp~~hgY-~~Dy~~idp 1027 (1351)
.+|+-. ..+++. .++....++. .+ |....+... +.. +-....+||| ++|||+++|
T Consensus 493 ~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~-l~~~~~~~~~~~~~~~~l~~y~~~~d~~nwGYd~~~y~a~~~ 569 (1083)
T 2fhf_A 493 ADIQQPFSRL-CEVNSAVKSSEFAGYCDSGSTVE-EV-LTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEG 569 (1083)
T ss_dssp CCTTSBHHHH-HHHCHHHHTSTTGGGTTSSCBHH-HH-HHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEEEEEEECS
T ss_pred cccccccccc-cccccccccccccccccccccch-hh-hhcccccccchhhhhhhhhccccccCCCCCCCCcCcCCCcCh
Confidence 000000 000000 0000000000 00 000000000 000 0000125999 999999999
Q ss_pred CCCC-------HHHHHHHHHHHHHc-CCEEEEEeecccccCCcccc-CcCCCCCCCccc-cCC-CCCCCCCC-CCCCCCC
Q psy9001 1028 LFGT-------PEQLKYLVDECHKA-GLYVLLDVVHSHASKNVLDG-LNEFDGTQACFF-HDG-PRGTHPLW-DSRLFNY 1095 (1351)
Q Consensus 1028 ~yGt-------~edfK~LV~~aH~~-GI~VILDVV~NHts~~~~~~-l~~~dg~~~~yf-~~~-~~g~~~~w-~~~dlN~ 1095 (1351)
+||| ++|||+||++||++ ||+||||||+|||+..+... ...+++..+.|| +.+ ..+.+.++ +..++|+
T Consensus 570 ~yGt~p~~~~r~~efk~LV~~~H~~~GI~VILDvV~NHt~~~~~~~~~~~~d~~~p~yy~~~~p~~g~~~~~tg~~dln~ 649 (1083)
T 2fhf_A 570 SYATDPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSVESATCCSDSAP 649 (1083)
T ss_dssp TTSSCCSTTHHHHHHHHHHHHHHHTSCCEEEEEECTTEESCCSSSCTTCCHHHHSTTTSBCBCTTTCCBCCTTSSEEBCT
T ss_pred hhcCCCCccccHHHHHHHHHHHHhhcCCEEEEEeccccCcCCCccchhccccCCCCCceeecCCCCCceecCCccCCcCc
Confidence 9999 89999999999998 99999999999999987322 122333333344 333 23444444 4457999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEE
Q psy9001 1096 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1175 (1351)
Q Consensus 1096 ~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~il 1175 (1351)
+||+||++|+++++||+++|||||||||+|.++ ...+|.++++.+++++|++++
T Consensus 650 ~~p~Vr~~i~d~l~~W~~e~gVDGfR~D~a~~~--------------------------~~~~~~~~~~~l~~~~p~~~l 703 (1083)
T 2fhf_A 650 EHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYH--------------------------PKAQILSAWERIKALNPDIYF 703 (1083)
T ss_dssp TSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS--------------------------BHHHHHHHHHHHHTTCTTCEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEeCcccC--------------------------CHHHHHHHHHHHHHhCCCeEE
Confidence 999999999999999999999999999999877 345778889999999999999
Q ss_pred EEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCcccc-----CCCcccccc-
Q psy9001 1176 IAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRL-----DPGTVYETY- 1249 (1351)
Q Consensus 1176 IaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~-----~~~~~~~~~- 1249 (1351)
|||.|...+ ..+... .++.+. +...+++|++.||+++.+.. .|.+. ..++.....
T Consensus 704 igE~w~~~~-~~~~~~------a~q~~~--------~g~~ig~fnd~~Rd~vr~~~----~F~~g~~l~~~~gf~~G~~~ 764 (1083)
T 2fhf_A 704 FGEGWDSNQ-SDRFEI------ASQINL--------KGTGIGTFSDRLRDAVRGGG----PFDSGDALRQNQGVGSGAGV 764 (1083)
T ss_dssp EECCCCCSC-TTTSCB------CCTTTT--------TTSSCEEECHHHHHHHHCSC----TTCCTTHHHHCCCGGGTTTT
T ss_pred EEeeccCcc-ccchhh------hhhhhc--------cCCchhhhhHHHHHHHhccC----ccccccccccccceeecccc
Confidence 999986443 111100 011111 11124678999999985421 13221 111111000
Q ss_pred -cC-------------------------------Cccc-c-cCccccccCCC----CccceeeecccCCCCCcCCccccc
Q psy9001 1250 -PE-------------------------------PWNN-R-RNSIKLYLPTR----TGIIDEVNLLNNVREERNNENNMK 1291 (1351)
Q Consensus 1250 -~~-------------------------------~~~~-r-~~s~~~y~p~~----~~~~~~vnfv~nHD~~rn~~~r~~ 1291 (1351)
+. ...+ + .++...|.... ..+...+||++|||+.|... .+.
T Consensus 765 ~p~~~~~~~a~rl~~~~d~~~~~~~g~l~~f~~~~~~g~~l~gs~~~y~~~~~~~~~~p~~~infl~nHD~~rL~D-~vs 843 (1083)
T 2fhf_A 765 LPNELTTLSDDQARHLADLTRLGMAGNLADFVLIDKDGAVKRGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWD-MIS 843 (1083)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHHTTCBTTCEEECTTSCEEEGGGSEETTEESCCBSSGGGEEECSCCSSSSCHHH-HHH
T ss_pred ccccchHHHHHHhhchhhhhhhhhhhhhhhhhhccccccccccchhhhcccccccccCccceeeeeccCCcchhhh-hhh
Confidence 00 0000 0 11112232110 12233499999999987411 111
Q ss_pred --------ccCCHHHHHHHHHHHHccCCccEEEee-cccCCCC--cc----ceeeccCCcc
Q psy9001 1292 --------RYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCS--TR----EVVKAPLPFG 1337 (1351)
Q Consensus 1292 --------~~~~~~~~r~A~allltspGiP~If~g-~~~~~~~--~~----~~~~~p~~~~ 1337 (1351)
...+.+++|+|++++||+||+||||+| |+..... .. ...+|||+|.
T Consensus 844 ~~~~~~~~~~~r~r~~kla~alLlts~GiP~IY~GdEiG~t~~gn~n~Y~~~d~~n~~dW~ 904 (1083)
T 2fhf_A 844 YKAAQEADLDTRVRMQAVSLATVMLGQGIAFDQQGSELLRSKSFTRDSYDSGDWFNRVDYS 904 (1083)
T ss_dssp HHSCTTCCHHHHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCTTCSCCTTSHHHHHCCCTT
T ss_pred hhcCCccchHHHHHHHHHHHHHHHHCCCCcEEEeehhcCCcCCcccCcccccccccccccc
Confidence 001236789999999999999999999 7777642 11 1235688875
|
| >2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-50 Score=510.57 Aligned_cols=319 Identities=20% Similarity=0.279 Sum_probs=225.8
Q ss_pred eeEEE-----EEEEEEEe-ecCCCCc--cccceeecCCCeEEEEcCCCC-CCCcccCcccEEEEEEEecCCceeeccCCc
Q psy9001 69 GLLCF-----MHVVCAAG-DFNNWNR--EEFAYKKLDFGKWELVLPPNP-DGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 139 (1351)
Q Consensus 69 gv~F~-----A~~V~LvG-DFN~Wd~--~~~~M~k~~~GvW~~~ip~~~-~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPy 139 (1351)
||+|+ |++|+|++ |+++|+. ..++|++.++|+|+++||+.. .|. .-.+|.+|+|+|+. +|....++|||
T Consensus 25 gv~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~~g~-~~~~g~~Y~y~v~~-~~~~~~~~DPy 102 (714)
T 2ya0_A 25 QVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGERGTWKQTLDSTNKLGI-TDFTGYYYQYQIER-QGKTVLALDPY 102 (714)
T ss_dssp EEEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECGGGEEEEEECTTCSSSC-SCCTTCEEEEEEEE-TTEEEEECCTT
T ss_pred EEEEEEECCCCCEEEEEEEeCCCCCccceEEeCccCCCCEEEEEECCccCCCc-cccCCcEEEEEEEe-CCceEEecCCc
Confidence 59999 99999998 8998864 469999877899999999743 221 11267899999985 45556789999
Q ss_pred ceEEecCCC-------CccceeeeeeCCCCC--CCCccCCCCC-CCCCCceEEEEecCCccCC--------CCCCCHHHH
Q psy9001 140 ATYVTEPPV-------VGHAYEQRIWNPKPQ--DKHKWTSSKP-KKPDNLKIYESHVGICTQE--------QKCASYEDF 201 (1351)
Q Consensus 140 A~~~~~~~~-------~~~~~~~~~~~p~~~--~~~~w~~~~p-~~~~~~vIYE~hvr~ft~~--------~~~G~~~gi 201 (1351)
|+++..... ...+..+.+++|... ..++|....+ ..+++++|||+|||+|+.+ ...|||++|
T Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~viYE~hv~~f~~~~~~~~~~~~~~Gt~~gi 182 (714)
T 2ya0_A 103 AKSLAAWNSDDSKIDDAHKVAKAAFVDPAKLGPQDLTYGKIHNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAF 182 (714)
T ss_dssp CSEECCCBGGGTTSCGGGSSCCEECCCGGGSSCTTCCCCCCTTCSSGGGCCEEEECHHHHHCCGGGTTTCSSCTTSHHHH
T ss_pred eeeeccCchhccccCccccCCcEEEEcccccCcccccccccCCCCCccccEEEEEEehhhccCCCCccccccCCcCHHHH
Confidence 999865210 111223344455311 1234433222 2468999999999999743 225999999
Q ss_pred HHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccc
Q psy9001 202 VRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMS 281 (1351)
Q Consensus 202 ~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s 281 (1351)
+++ |||||+||||+ |||||||++.. +.+....+....+..+...++|||++.+||
T Consensus 183 ~~~-L~yLk~LGvt~----I~L~Pi~~~~~---------~~e~~~~~~~~~~~~~~~~~~wGY~~~~~~----------- 237 (714)
T 2ya0_A 183 IEK-LDYLKDLGVTH----IQLLPVLSYYF---------VNELKNHERLSDYASSNSNYNWGYDPQNYF----------- 237 (714)
T ss_dssp HTT-HHHHHHHTCSE----EEESCCBCBSS---------CBGGGTTSCCCSCCSSSCSCCCSCSBSCSS-----------
T ss_pred HHH-hHHHHHcCCCE----EEECCcccccc---------cCcccccccccccccCcCcCccCCCCccCc-----------
Confidence 998 99999999999 99999775210 000000000001111222346999999999
Q ss_pred cCCCCchhcccccccCCCCccccccccccccCCCCC--CHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCC
Q psy9001 282 TLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGT 359 (1351)
Q Consensus 282 ~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G--~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~ 359 (1351)
+|+++|++. |..+ +++|||+||++||++||+||||||+||++.++ .|.+.
T Consensus 238 ----------a~~~~yg~~-------------~~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~-----~~~~~ 289 (714)
T 2ya0_A 238 ----------SLTGMYSSD-------------PKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVD-----LFEDL 289 (714)
T ss_dssp ----------SBCSTTSSC-------------TTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTBCSCHH-----HHHTT
T ss_pred ----------ccChhhccC-------------CCCccchHHHHHHHHHHHHHCCCEEEEEeccCcccCcc-----ccccc
Confidence 888666553 2222 48999999999999999999999999999864 34455
Q ss_pred CCcCccc-CCCCC-CCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCc
Q psy9001 360 QACFFHD-GPRGT-HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN 437 (1351)
Q Consensus 360 ~~~yy~~-~~~~~-~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~ 437 (1351)
.+.||+. +.++. ...|+++.+|+++|+||++|+++++||++||||||||||+|..+
T Consensus 290 ~~~yy~~~~~~g~~~~~~~~~~l~~~~~~v~~~i~d~l~~W~~e~~vDGfR~D~~~~~---------------------- 347 (714)
T 2ya0_A 290 EPNYYHFMDADGTPRTSFGGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDH---------------------- 347 (714)
T ss_dssp STTTSBCBCTTCCBCEETTEEBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS----------------------
T ss_pred CCCeeEEeCCCCCCccccCCCCcccCCHHHHHHHHHHHHHHHHhhCceEEEEeCCCCC----------------------
Confidence 5556653 33332 34577788999999999999999999999999999999998754
Q ss_pred cCchHHHHHHHHHHHHHhhCCCeEEEEEcCC
Q psy9001 438 VDTDALIYLMVANKFLHDKYPEIITIAEDVS 468 (1351)
Q Consensus 438 ~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~ 468 (1351)
..++|+.++..+++.+|++++|||.|.
T Consensus 348 ----~~~~~~~~~~~~~~~~p~~~ligE~w~ 374 (714)
T 2ya0_A 348 ----DAASIEEAYKAARALNPNLIMLGEGWR 374 (714)
T ss_dssp ----BHHHHHHHHHHHHHHCTTCEEEECCCS
T ss_pred ----CHHHHHHHHHHHHHhCCCeEEEecccc
Confidence 134566666667777777777777764
|
| >2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-50 Score=506.51 Aligned_cols=278 Identities=23% Similarity=0.326 Sum_probs=212.1
Q ss_pred cCceeEEE-----EEEEEEEeecCCCCc----cccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEec----CCce
Q psy9001 66 HKAGLLCF-----MHVVCAAGDFNNWNR----EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ----HGHL 132 (1351)
Q Consensus 66 ~~~gv~F~-----A~~V~LvGDFN~Wd~----~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~----~g~~ 132 (1351)
...||+|+ |++|+|++ |+.+.. ..++|.+.++|+|+++||++.+| .+|+|+|++. +|.+
T Consensus 27 ~~~g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g-------~~Y~y~v~g~~~p~~g~~ 98 (718)
T 2vr5_A 27 DDDGVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNKTGDIWHVFVPGLRPG-------QLYAYRVYGPYKPELGLR 98 (718)
T ss_dssp GGTEEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEESSSEEEEEEETCCTT-------CEEEEEEECCEETTTTEE
T ss_pred CCCeEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccCCCCEEEEEeCCCCCC-------CEEEEEEeeecCcccCcc
Confidence 45799999 99999998 876432 46899887889999999988765 5999999964 5654
Q ss_pred e----eccCCcceEEecCCCC------------------------ccceeeeeeCCCCCCCCccCCC---CCC--CCCCc
Q psy9001 133 L----DRLSPWATYVTEPPVV------------------------GHAYEQRIWNPKPQDKHKWTSS---KPK--KPDNL 179 (1351)
Q Consensus 133 ~----~~~DPyA~~~~~~~~~------------------------~~~~~~~~~~p~~~~~~~w~~~---~p~--~~~~~ 179 (1351)
+ .++||||++++.+... .....+++++| .|+|+++ +++ +++++
T Consensus 99 ~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~s~v~d~----~~~W~~~~~~~~~~~~~~~~ 174 (718)
T 2vr5_A 99 FNPNKVLIDPYAKAINGSVIWNDAVFGYKIGDQNQDLTYDERDSGEYVPKSVVINP----YFEWDDEDFIKGKKVPLKDT 174 (718)
T ss_dssp CCTTSCBCCTTCSCBCSCCCCCGGGSSSCSSCTTTTTSCCCCCCTTTSCCEECCCC----CCCCTTGGGGSSSCCCTTSC
T ss_pred cCCCceEcCcCccccccCccccccccccccCCcccccccccccccccccceEEecC----CcCCCccccccCCCCChhHC
Confidence 2 6799999998853210 01113445555 3889876 443 56899
Q ss_pred eEEEEecCCccCC------CCCCCHHHHHHh-hhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccccc
Q psy9001 180 KIYESHVGICTQE------QKCASYEDFVRV-VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVA 252 (1351)
Q Consensus 180 vIYE~hvr~ft~~------~~~G~~~gi~~~-~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~ 252 (1351)
+|||+|||+|+.. ...|||++|+++ +|||||+||||+ |||||||++.. +....+
T Consensus 175 vIYeihv~~f~~~~~~~~~~~~Gt~~gi~~~~~l~yLk~LGvt~----I~L~Pi~~~~~-----------~~~~~~---- 235 (718)
T 2vr5_A 175 VIYEVHVKGFTKLRLDLPENIRGTYEGLASEQMISYLKDLGITT----VELMPVFHFID-----------QRFLTD---- 235 (718)
T ss_dssp CEEEECTTTTTTTCTTSCTTSTTSHHHHTSHHHHHHHHHHTCCE----EEECCCBCBCC-----------CHHHHT----
T ss_pred EEEEEEcchhhcCCCCCCcccCcCHHHHhcchhhHHHHHcCCCe----EEEeCCEecCc-----------cccccc----
Confidence 9999999999752 348999999986 799999999999 99999775310 000001
Q ss_pred ccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCC-------HHHHHHH
Q psy9001 253 YAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGT-------PEQLKYL 325 (1351)
Q Consensus 253 ~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~-------~~efk~L 325 (1351)
....++|||++.+|| +++ ++||+ ++|||+|
T Consensus 236 ---~g~~~~wGY~~~~y~---------------------~~~-------------------~~yGt~~~~~~~~~dfk~l 272 (718)
T 2vr5_A 236 ---KGLTNYWGYDPINFF---------------------SPE-------------------CRYSSTGCLGGQVLSFKKM 272 (718)
T ss_dssp ---TTCCCSSCCCBSCSS---------------------SBC-------------------GGGCSSCTTTHHHHHHHHH
T ss_pred ---cCCcCccCcCcccCc---------------------ccC-------------------hhhcCCCCCCchHHHHHHH
Confidence 112467999999999 787 66666 8999999
Q ss_pred HHHHHHcCCEEEEEeeccccccCCcCCc-ccCCCCC-CcCcccCCCC--CCCCCC--CccCCCCCHHHHHHHHHHHHHHH
Q psy9001 326 VDECHKAGLYVLLDVVHSHASKNVLDGL-NEFDGTQ-ACFFHDGPRG--THPLWD--SRLFNYSEIEVLRFLLSNLRWYL 399 (1351)
Q Consensus 326 V~~~H~~GI~VILDvV~NH~~~~~~~~~-~~f~g~~-~~yy~~~~~~--~~~~w~--~~~ln~~~p~v~~~l~~~l~~W~ 399 (1351)
|++||++||+||||||+||++.++.++. ..|.+.+ +.||+..+.+ .+.+|. +++||++||+||++|+++++||+
T Consensus 273 v~~~H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~ 352 (718)
T 2vr5_A 273 VNELHNAGIEVIIDVVYNHTAEGNHLGPTLSFRGIDNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWV 352 (718)
T ss_dssp HHHHHTTTCEEEEEECCSCCSSCSTTSCCSSHHHHHSTTTBCBCTTTSSSBCCSSSSSCCBCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEeccCcccCccccCccccccCCCCCcceEeCCCCCceeecCCCccCeecCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876653 2343332 3566554322 333443 47899999999999999999999
Q ss_pred HHcCCCcccccccccccc
Q psy9001 400 DEYQFDGFRFDGVTSMLY 417 (1351)
Q Consensus 400 ~e~~vDGfR~D~a~~~~~ 417 (1351)
+||||||||||+|..|..
T Consensus 353 ~e~gvDGfR~D~~~~l~~ 370 (718)
T 2vr5_A 353 TEMHVDGFRFDLAAALAR 370 (718)
T ss_dssp HTTCCCEEEETTGGGGGB
T ss_pred HHcCCCEEEEcchhhhhh
Confidence 999999999999998854
|
| >2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=527.61 Aligned_cols=298 Identities=14% Similarity=0.194 Sum_probs=216.5
Q ss_pred ccccccCceeEEE-----EEEEEEEe-ecCCCCccccceee-cCCCeEEEEcCCCCCCCcccCcccEEEEEEEe---cCC
Q psy9001 61 LVDECHKAGLLCF-----MHVVCAAG-DFNNWNREEFAYKK-LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRN---QHG 130 (1351)
Q Consensus 61 l~~~~~~~gv~F~-----A~~V~LvG-DFN~Wd~~~~~M~k-~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~---~~g 130 (1351)
|+......||+|+ |++|+|++ |||+|....++|++ ...|+|+++||+..+| .+|+|+|+. .+|
T Consensus 297 lGa~~~~~gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~~~~GvW~~~v~~~~~G-------~~Y~y~v~~~~p~~g 369 (1083)
T 2fhf_A 297 YGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGGSDLKG-------AFYRYAMTVYHPQSR 369 (1083)
T ss_dssp CEEEEETTEEEEEEECTTCSEEEEEEECTTCCEEEEEECEECTTTCEEEEEECGGGTT-------CEEEEEEEEEETTTT
T ss_pred ceeEEECCeEEEEEECCCCCEEEEEEEcCCCCccceEECeECCCCCEEEEEECCCCCC-------CEEEEEEEeecCCCC
Confidence 4555567899999 99999999 99999877899996 5679999999987655 699999984 145
Q ss_pred ce--eeccCCcceEEecCCCCccceee--eeeCCCCCCCCccCCCCCC----CC---CCceEEEEecCCccCC------C
Q psy9001 131 HL--LDRLSPWATYVTEPPVVGHAYEQ--RIWNPKPQDKHKWTSSKPK----KP---DNLKIYESHVGICTQE------Q 193 (1351)
Q Consensus 131 ~~--~~~~DPyA~~~~~~~~~~~~~~~--~~~~p~~~~~~~w~~~~p~----~~---~~~vIYE~hvr~ft~~------~ 193 (1351)
.. ..++||||++++.+...|++++. ..|. ++.|...+++ .+ .+++|||+|||+||.. .
T Consensus 370 ~~~~~~~~DPYa~~~~~~~~~s~v~d~~~~~~~-----p~~W~~~~~p~~~~~~~~~~~~vIYE~hvr~ft~~~~~~~~~ 444 (1083)
T 2fhf_A 370 KVEQYEVTDPYAHSLSTNSEYSQVVDLNDSALK-----PEGWDGLTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAE 444 (1083)
T ss_dssp EEEEEEECCTTCSCBCGGGSSEECBCTTCGGGS-----CTTGGGCCCSSCCSSHHHHHTCEEEEECHHHHHTTCTTSCGG
T ss_pred ccccceecCCccceeccCCCcceEecccccccC-----CcccccccCcccccccccccccEEEEEecchhcCCCCCCCcC
Confidence 43 57999999999987666665542 1233 4589877654 23 3449999999999752 3
Q ss_pred CCCCHHHHHHh------hhHHHHHcCCCcCceeEEEeecccccccC-cc----ceEEEcc----------ccc-------
Q psy9001 194 KCASYEDFVRV------VIPRIVKQGMAIPDKWIELLKKFKDEDWN-MG----NIVHTLT----------NRR------- 245 (1351)
Q Consensus 194 ~~G~~~gi~~~------~L~yLk~LGvt~~~~~I~L~Pif~~~~~~-~~----~ii~~~~----------~~~------- 245 (1351)
.+|||++++++ .|+|||+||||| |||||||++...+ .. ++-|++. +.+
T Consensus 445 ~~Gt~~g~~e~~~~~i~~L~~L~~lGvt~----i~LlPv~~~~~v~e~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 520 (1083)
T 2fhf_A 445 LRGKYLALTAQESNMVQHLKQLSASGVTH----IELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDS 520 (1083)
T ss_dssp GTTSGGGGGCTTSHHHHHHHHHHHHTCCE----EEESCCEEESSSCCCGGGCCCTTSBHHHHHHHCHHHHTSTTGGGTTS
T ss_pred CCCChhhhhhhhhhhHHHHHHHHhcCCCE----EEECCcccccccccccccccccccccccccccccccccccccccccc
Confidence 46999999763 488999999999 9999988642110 00 0001110 000
Q ss_pred -------ccccccccc--------------CCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCcccc
Q psy9001 246 -------YMEKTVAYA--------------ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLK 304 (1351)
Q Consensus 246 -------~~e~~~~~~--------------~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~ 304 (1351)
+.+. .+.. .+.+.++|||++++|| +|+
T Consensus 521 ~~~~~~~l~~~-~~~~~~~~~~~~~l~~y~~~~d~~nwGYd~~~y~---------------------a~~---------- 568 (1083)
T 2fhf_A 521 GSTVEEVLTQL-KQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYT---------------------VPE---------- 568 (1083)
T ss_dssp SCBHHHHHHHH-STTCBTTBCHHHHHHHHHTTSSSCCCCCCEEEEE---------------------EEC----------
T ss_pred cccchhhhhcc-cccccchhhhhhhhhccccccCCCCCCCCcCcCC---------------------CcC----------
Confidence 0000 0000 0013456999999999 888
Q ss_pred ccccccccCCCCCC-------HHHHHHHHHHHHHc-CCEEEEEeeccccccCCcCCc-ccCCCCCCcCcc-cCC-CCCCC
Q psy9001 305 YLVDECHKAGLFGT-------PEQLKYLVDECHKA-GLYVLLDVVHSHASKNVLDGL-NEFDGTQACFFH-DGP-RGTHP 373 (1351)
Q Consensus 305 y~~d~~~id~~~G~-------~~efk~LV~~~H~~-GI~VILDvV~NH~~~~~~~~~-~~f~g~~~~yy~-~~~-~~~~~ 373 (1351)
++||+ ++|||+||++||++ ||+||||||+|||+.++.++. ..|++..+.||+ .++ .+.+.
T Consensus 569 ---------~~yGt~p~~~~r~~efk~LV~~~H~~~GI~VILDvV~NHt~~~~~~~~~~~~d~~~p~yy~~~~p~~g~~~ 639 (1083)
T 2fhf_A 569 ---------GSYATDPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSVE 639 (1083)
T ss_dssp ---------STTSSCCSTTHHHHHHHHHHHHHHHTSCCEEEEEECTTEESCCSSSCTTCCHHHHSTTTSBCBCTTTCCBC
T ss_pred ---------hhhcCCCCccccHHHHHHHHHHHHhhcCCEEEEEeccccCcCCCccchhccccCCCCCceeecCCCCCcee
Confidence 66666 89999999999998 999999999999999876653 334544444553 332 34443
Q ss_pred CCC-CccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 374 LWD-SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 374 ~w~-~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
+|. ..++|++||+||++|+++++||+++|||||||||+|..+
T Consensus 640 ~~tg~~dln~~~p~Vr~~i~d~l~~W~~e~gVDGfR~D~a~~~ 682 (1083)
T 2fhf_A 640 SATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYH 682 (1083)
T ss_dssp CTTSSEEBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS
T ss_pred cCCccCCcCcCCHHHHHHHHHHHHHHHHHhCCcEEEEeCcccC
Confidence 333 246799999999999999999999999999999999876
|
| >2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-50 Score=509.79 Aligned_cols=471 Identities=16% Similarity=0.209 Sum_probs=284.1
Q ss_pred cccceeecCCc-EEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcccccccc
Q psy9001 696 KYGIHVQADNS-VRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHK 774 (1351)
Q Consensus 696 ~~G~~~~~~~~-~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1351)
.+|+++.++|+ +.|++|||+|++|.|++|.. .
T Consensus 14 ~lGa~~~~~g~gv~F~vwap~A~~V~l~l~~~-------------------------~---------------------- 46 (714)
T 2ya0_A 14 KLGADLKEEGKQVDLTLWSPSADKVSVVVYDK-------------------------N---------------------- 46 (714)
T ss_dssp CCEEEEETTTTEEEEEEECTTCSEEEEEEECS-------------------------S----------------------
T ss_pred CCCCEEeCCCCEEEEEEECCCCCEEEEEEEeC-------------------------C----------------------
Confidence 69999988876 99999999999999999411 0
Q ss_pred cccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCc-cccccCCCCCCeEEEEEecCCceeeEEEecCcce
Q psy9001 775 LLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELH-KLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWA 852 (1351)
Q Consensus 775 ~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya 852 (1351)
+++. ....++|++ +.|+| +++|++.. .|. -..+|..|+|+|.. ++ .....+||||
T Consensus 47 --~~~~--~~~~~~m~~~~~gvW--------------~~~v~~~~~~g~-~~~~g~~Y~y~v~~-~~---~~~~~~DPya 103 (714)
T 2ya0_A 47 --DPDK--VVGTVALEKGERGTW--------------KQTLDSTNKLGI-TDFTGYYYQYQIER-QG---KTVLALDPYA 103 (714)
T ss_dssp --CTTS--EEEEEECEECGGGEE--------------EEEECTTCSSSC-SCCTTCEEEEEEEE-TT---EEEEECCTTC
T ss_pred --CCCc--cceEEeCccCCCCEE--------------EEEECCccCCCc-cccCCcEEEEEEEe-CC---ceEEecCCce
Confidence 0000 012467865 48999 67776421 110 01135678999975 34 4667899999
Q ss_pred EEEec-CC-----------CCCeeeeeeeeCCCCCCCCccccCCCC-CCCCceEEEeecCCcccCCCccccccccccccc
Q psy9001 853 TYVTE-PP-----------VVGHAYEQRIWNPKPQDKHKWTSSKPK-KPENLKIYESHVGICTQEQKCASYEDFVRVVIP 919 (1351)
Q Consensus 853 ~~v~~-~~-----------~~~~~~d~~~~~p~~~~~~~w~~~~p~-~p~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp 919 (1351)
++++. +. .+++|+|...+.|. .++|....+. ..++++|||+|||+||.++.++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~~---~~~~~~~~~~~~~~~~viYE~hv~~f~~~~~~~~---------- 170 (714)
T 2ya0_A 104 KSLAAWNSDDSKIDDAHKVAKAAFVDPAKLGPQ---DLTYGKIHNFKTREDAVIYEAHVRDFTSDPAIAK---------- 170 (714)
T ss_dssp SEECCCBGGGTTSCGGGSSCCEECCCGGGSSCT---TCCCCCCTTCSSGGGCCEEEECHHHHHCCGGGTT----------
T ss_pred eeeccCchhccccCccccCCcEEEEcccccCcc---cccccccCCCCCccccEEEEEEehhhccCCCCcc----------
Confidence 99875 21 14566666544443 3455443322 34899999999999997643210
Q ss_pred ce-eccCCCcccccccccccccCCceEEEecCCCCCCCCcccc-cCccceecCCccceeeecCCCCCCCccccccCccee
Q psy9001 920 RI-VKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWN-REEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKL 997 (1351)
Q Consensus 920 ~i-k~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~-~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l 997 (1351)
.+ ...|+|.++..++++|+++|++.++|+ | .+.+. +++.. ...
T Consensus 171 ~~~~~~Gt~~gi~~~L~yLk~LGvt~I~L~-P------i~~~~~~~e~~-------------~~~--------------- 215 (714)
T 2ya0_A 171 DLTKPFGTFEAFIEKLDYLKDLGVTHIQLL-P------VLSYYFVNELK-------------NHE--------------- 215 (714)
T ss_dssp TCSSCTTSHHHHHTTHHHHHHHTCSEEEES-C------CBCBSSCBGGG-------------TTS---------------
T ss_pred ccccCCcCHHHHHHHhHHHHHcCCCEEEEC-C------cccccccCccc-------------ccc---------------
Confidence 00 012445555555555555555555555 1 11110 00000 000
Q ss_pred eecccCCCCCCCCCCcccccc-ccccccccCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcC
Q psy9001 998 VVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGT--------PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 1068 (1351)
Q Consensus 998 ~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt--------~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~ 1068 (1351)
....+.+. ....+||| +++||+++++||+ ++|||+||++||++||+||||||+||++.++ .
T Consensus 216 ----~~~~~~~~-~~~~~wGY~~~~~~a~~~~yg~~~~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~-----~ 285 (714)
T 2ya0_A 216 ----RLSDYASS-NSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVD-----L 285 (714)
T ss_dssp ----CCCSCCSS-SCSCCCSCSBSCSSSBCSTTSSCTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTBCSCHH-----H
T ss_pred ----cccccccC-cCcCccCCCCccCcccChhhccCCCCccchHHHHHHHHHHHHHCCCEEEEEeccCcccCcc-----c
Confidence 00000000 00124899 9999999999998 7999999999999999999999999999875 1
Q ss_pred CCCCCCcccc-CCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccc
Q psy9001 1069 FDGTQACFFH-DGPRGT-HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 1146 (1351)
Q Consensus 1069 ~dg~~~~yf~-~~~~g~-~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~ 1146 (1351)
+.+..+.||+ .+..+. ..+|+++++|+++|+||++|+++++||++||||||||||+|+++
T Consensus 286 ~~~~~~~yy~~~~~~g~~~~~~~~~~l~~~~~~v~~~i~d~l~~W~~e~~vDGfR~D~~~~~------------------ 347 (714)
T 2ya0_A 286 FEDLEPNYYHFMDADGTPRTSFGGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDH------------------ 347 (714)
T ss_dssp HHTTSTTTSBCBCTTCCBCEETTEEBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS------------------
T ss_pred ccccCCCeeEEeCCCCCCccccCCCCcccCCHHHHHHHHHHHHHHHHhhCceEEEEeCCCCC------------------
Confidence 2333445554 233332 44677788999999999999999999999999999999999855
Q ss_pred cCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhh
Q psy9001 1147 FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVV 1226 (1351)
Q Consensus 1147 ~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~ 1226 (1351)
...+|+.++..+++.+|++++|||.|.......... ...++..|... ... .+.+++.+|++
T Consensus 348 --------~~~~~~~~~~~~~~~~p~~~ligE~w~~~~g~~~~~---~~~~~~~~~~~-------~~~-~~~f~d~~r~~ 408 (714)
T 2ya0_A 348 --------DAASIEEAYKAARALNPNLIMLGEGWRTYAGDENMP---TKAADQDWMKH-------TDT-VAVFSDDIRNN 408 (714)
T ss_dssp --------BHHHHHHHHHHHHHHCTTCEEEECCCSCCCCSTTCC---CCBSSGGGGGG-------CSS-SEEECHHHHHH
T ss_pred --------CHHHHHHHHHHHHHhCCCeEEEecccccccCccccc---ccccchhHHhc-------CCC-ccccchHHHHH
Confidence 345778899999999999999999986432111000 00111111110 001 13466778888
Q ss_pred hccCCCCC--CCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCccccc----cc-------
Q psy9001 1227 LDSDCSHF--GGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMK----RY------- 1293 (1351)
Q Consensus 1227 l~~d~~~~--~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~----~~------- 1293 (1351)
+.++.... .++.++......... ....++...|. ...+...|||++|||+.+... ++. ..
T Consensus 409 ~~~~~~~~~~~~~~~g~~~~~~~l~----~~l~~~~~~~~--~~~p~~~vnfv~nHD~~~l~d-~~~~~~~~~~~~~~~~ 481 (714)
T 2ya0_A 409 LKSGYPNEGQPAFITGGKRDVNTIF----KNLIAQPTNFE--ADSPGDVIQYIAAHDNLTLFD-IIAQSIKKDPSKAENY 481 (714)
T ss_dssp HHCCSSSTTCCCTTTTCCEEHHHHH----HHHTTCCTTSC--CSSGGGEEECSCCSSSSCHHH-HHHHHHTCCTTSHHHH
T ss_pred HhccCCcccchhhhcCCcccHHHHH----HHHhcCccccC--CCCHHHHhhHHHhCCCcchhh-hhhhhcccCcccccch
Confidence 75431100 011111100000000 00011112221 112233399999999876411 110 00
Q ss_pred -CCHHHHHHHHHHHHccCCccEEEee-cccCCCC-ccceeeccCCcce
Q psy9001 1294 -IQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCS-TREVVKAPLPFGV 1338 (1351)
Q Consensus 1294 -~~~~~~r~A~allltspGiP~If~g-~~~~~~~-~~~~~~~p~~~~~ 1338 (1351)
...+++|+|++++||+||+|||||| |+..... +....+.||+||.
T Consensus 482 ~~~~~~~~la~~lll~~~G~P~i~~GdE~g~~~~~~d~~~~~~~~~gr 529 (714)
T 2ya0_A 482 AEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAYRTPVAEDK 529 (714)
T ss_dssp HHHHHHHHHHHHHHHHSSSEEEEETTTTTTCCCBCCCGGGSSCCCGGG
T ss_pred HHHHHHHHHHHHHHHHCCCCcEEEechhhcccCCCCCchhhhcccccc
Confidence 0125789999999999999999999 6666543 3455666666653
|
| >2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-51 Score=515.50 Aligned_cols=449 Identities=18% Similarity=0.231 Sum_probs=286.8
Q ss_pred hccccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccc
Q psy9001 694 YNKYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELH 773 (1351)
Q Consensus 694 y~~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (1351)
...+|+++..++ ++|++|||+|++|.|++|+.. |
T Consensus 9 ~~~lGa~~~~~g-~~F~vwap~A~~V~l~~f~~~-----------------------------~---------------- 42 (657)
T 2wsk_A 9 PAPLGAHYDGQG-VNFTLFSAHAERVELCVFDAN-----------------------------G---------------- 42 (657)
T ss_dssp SCSSSEEECSSE-EEEEEECSSCSEEEEEEECTT-----------------------------C----------------
T ss_pred CCCCCcEEeCCe-EEEEEECCCCCEEEEEEECCC-----------------------------C----------------
Confidence 457999987654 999999999999999995420 0
Q ss_pred ccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEe----cCCcee-eEEEe
Q psy9001 774 KLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKR----RYGLMV-NFLEQ 847 (1351)
Q Consensus 774 ~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~----~~~~~~-~~~~~ 847 (1351)
....++|++ ..|+| +++|++...| ..|+|+|.. ..|... ....+
T Consensus 43 ---------~~~~~~m~~~~~g~w--------------~~~v~~~~~g-------~~Y~y~v~~~~~p~~g~~~~~~~~~ 92 (657)
T 2wsk_A 43 ---------QEHRYDLPGHSGDIW--------------HGYLPDARPG-------LRYGYRVHGPWQPAEGHRFNPAKLL 92 (657)
T ss_dssp ---------CEEEEECCEEETTEE--------------EEEEETCCTT-------CEEEEEEECCCCGGGTCCCCTTSCB
T ss_pred ---------CEEEEeCcCCCCCEE--------------EEEECCCCCC-------CEEEEEEeeeecCccCcccccceEE
Confidence 002367854 58999 8888876555 667999986 334100 01268
Q ss_pred cCcceEEEecCCCCCe-----------------eeeeeeeCCCCCCCCccccCCCC-CC-CCceEEEeecCCccc-CC--
Q psy9001 848 LSPWATYVTEPPVVGH-----------------AYEQRIWNPKPQDKHKWTSSKPK-KP-ENLKIYESHVGICTQ-EQ-- 905 (1351)
Q Consensus 848 ~dPya~~v~~~~~~~~-----------------~~d~~~~~p~~~~~~~w~~~~p~-~p-~d~iIYE~HV~~~s~-~~-- 905 (1351)
+||||+++..+..++. .....+++| .|+|+.++++ .+ ++++|||+|||.|+. ++
T Consensus 93 ~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~----~~~W~~~~~~~~~~~~~vIYei~v~~F~~~~~~~ 168 (657)
T 2wsk_A 93 IDPCARQIDGEFKDNPLLHAGHNEPDYRDNAAIAPKCVVVVD----HYDWEDDAPPRTPWGSTIIYEAHVKGLTYLHPEI 168 (657)
T ss_dssp CCTTCSCEESCCCCCGGGBCCSSSCCCCCCGGGSCEEECCCC----CCCCTTCCCCCCCGGGCCEEEECHHHHHTTCTTS
T ss_pred cCcCcceecCCccccccccccccccccccccccccceEEeCC----CCCCCCCCCCCCCchhcEEEEEEcceeeccCCCC
Confidence 9999999997643221 112333443 3899988753 44 899999999999996 33
Q ss_pred ---Ccccccccccc-cccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCC
Q psy9001 906 ---KCASYEDFVRV-VIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPP 981 (1351)
Q Consensus 906 ---~~gty~~f~~~-~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp 981 (1351)
..|+|.+++++ .|++||+|| ++.++|+- .+.+..+..
T Consensus 169 ~~~~~G~~~gi~~~~~l~yL~~LG----------------vt~i~L~P-------i~~~~~~~~---------------- 209 (657)
T 2wsk_A 169 PVEIRGTYKALGHPVMINYLKQLG----------------ITALELLP-------VAQFASEPR---------------- 209 (657)
T ss_dssp CGGGTTSHHHHTSHHHHHHHHHHT----------------CCEEEESC-------CEEECCCHH----------------
T ss_pred CccCCcCHHHHhcccchHHHHHcC----------------CCEEEECC-------ccccCcccc----------------
Confidence 25666666653 456666666 33334431 011000000
Q ss_pred CCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCC-----CHHHHHHHHHHHHHcCCEEEEEeec
Q psy9001 982 NPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFG-----TPEQLKYLVDECHKAGLYVLLDVVH 1055 (1351)
Q Consensus 982 ~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yG-----t~edfK~LV~~aH~~GI~VILDVV~ 1055 (1351)
....| ...+||| ++||++++|+|| |++|||+||++||++||+||||||+
T Consensus 210 ------------------~~~~g-------~~~~wGY~~~~y~~~~~~~G~~p~~~~~d~~~lv~~~H~~Gi~VilD~V~ 264 (657)
T 2wsk_A 210 ------------------LQRMG-------LSNYWGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVL 264 (657)
T ss_dssp ------------------HHTTT-------CCCSSCCCEEEEEEECGGGCSSGGGHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ------------------ccccc-------cccccCcCcccCCCCCHHHcCCCCcCHHHHHHHHHHHHHCCCEEEEEEee
Confidence 00001 1136899 999999999999 5899999999999999999999999
Q ss_pred ccccCCccccCc-CCCCC-CCccccCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCccccccc
Q psy9001 1056 SHASKNVLDGLN-EFDGT-QACFFHDGPRGTHPLW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYH 1131 (1351)
Q Consensus 1056 NHts~~~~~~l~-~~dg~-~~~yf~~~~~g~~~~w--~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~ 1131 (1351)
||++.++..+.. .+.+. ..+||+..+.+...+| ++++||++||+||++|+++++||++||||||||||+|.+|.+.
T Consensus 265 NH~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~d~~~~W~~e~gvDGfR~D~~~~l~~~ 344 (657)
T 2wsk_A 265 NHSAELDLDGPLFSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRT 344 (657)
T ss_dssp SCCTTCSTTSBCCSHHHHHHHHHBCBCTTSSBCCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTTCCCEEEETTTHHHHBS
T ss_pred cccccccccCccccccCCCCccceEECCCCCeeCCCCcCCcccCCCHHHHHHHHHHHHHHHHHhCCcEEEEecccccccc
Confidence 999998743211 11111 1356665544444334 4679999999999999999999999999999999999988432
Q ss_pred CCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCccccccccccccccccc
Q psy9001 1132 NHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSIL 1211 (1351)
Q Consensus 1132 ~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~ 1211 (1351)
. .+. ....++++++. ....|++++|||.|...+. + |+.+.
T Consensus 345 ~-----~~~-------------~~~~~~~~i~~--~~~~~~~~liaE~w~~~~~--------~----~~~~~-------- 384 (657)
T 2wsk_A 345 P-----EFR-------------QDAPLFTAIQN--CPVLSQVKLIAEPWDIAPG--------G----YQVGN-------- 384 (657)
T ss_dssp S-----SBC-------------TTCHHHHHHHH--CTTGGGSEEEECCBCSSTT--------C----BCTTC--------
T ss_pred c-----ccc-------------hhHHHHHHHHh--CcccCCcEEEEccccCCCC--------c----ccccC--------
Confidence 1 110 11235555544 2467899999998743221 1 22221
Q ss_pred ccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccc-cCccccccCCCCccceeeecccCCCCCcCC----
Q psy9001 1212 FPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR-RNSIKLYLPTRTGIIDEVNLLNNVREERNN---- 1286 (1351)
Q Consensus 1212 f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r-~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~---- 1286 (1351)
|+..+.+|++.|++++ ++|.+++........ .+ ..+...|......+..++||++|||+.+..
T Consensus 385 f~~~~~~~n~~~~~~~-------~~~~~g~~~~~~~~~-----~~l~~~~~~y~~~~~~~~~~~nf~~~HD~~~l~dl~~ 452 (657)
T 2wsk_A 385 FPPLFAEWNDHFRDAA-------RRFWLHYDLPLGAFA-----GRFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDCVC 452 (657)
T ss_dssp SCTTEEEEEHHHHHHH-------HHHHHTSCSCHHHHH-----HHHBTTHHHHSSTTCCGGGEEECSCCSSSCCHHHHTT
T ss_pred CCccHHHHhHHHHHHH-------HHHhccCCchHHHHH-----HHHhcchhhhccCCCCccceeehhhcCCCCcHHHHHH
Confidence 4444578899999888 345444432221111 11 112223332223334448999999975320
Q ss_pred ---------cc--------ccccc--------------CCHHHHHHHHHHHHccCCccEEEee-cccCC--CC----ccc
Q psy9001 1287 ---------EN--------NMKRY--------------IQTESNMNGFGIQTLPTQSPLYLVA-KIEKP--CS----TRE 1328 (1351)
Q Consensus 1287 ---------~~--------r~~~~--------------~~~~~~r~A~allltspGiP~If~g-~~~~~--~~----~~~ 1328 (1351)
++ +.... .+.+++|+|++++||+||+|||||| |+... +. .+-
T Consensus 453 ~~~~~~~~~g~~~~~g~~~~~s~n~~~~g~~~~~~~~~~~~~~~r~~~a~ll~~~G~P~iy~GdE~G~~~~g~~~~y~~d 532 (657)
T 2wsk_A 453 FNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQD 532 (657)
T ss_dssp CSSCCCGGGSSTTCSSCSCCCCCCTTSSSSCCCHHHHHHHHHHHHHHHHHHHHSBSEEEEETTTTTTCCCTTCSCCTTCC
T ss_pred HHhhhhhhccccccCCcccccccccccccCCCchhHHHHHHHHHHHHHHHHHHcccCCEEEechhhccccCCCCCccccC
Confidence 00 00000 1236789999999999999999999 66655 21 122
Q ss_pred eeeccCCcce
Q psy9001 1329 VVKAPLPFGV 1338 (1351)
Q Consensus 1329 ~~~~p~~~~~ 1338 (1351)
..++||+|.-
T Consensus 533 ~~~~~~~W~~ 542 (657)
T 2wsk_A 533 NQLTWLDWSQ 542 (657)
T ss_dssp STTTSCCGGG
T ss_pred CccCccCccc
Confidence 3568899973
|
| >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=515.48 Aligned_cols=417 Identities=20% Similarity=0.311 Sum_probs=290.1
Q ss_pred cccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccccc
Q psy9001 696 KYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKL 775 (1351)
Q Consensus 696 ~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1351)
.+|+++..+++++|++|||+|++|+|+++ +
T Consensus 33 ~lGa~~~~~~~~~F~vwap~a~~v~l~~~-~------------------------------------------------- 62 (618)
T 3m07_A 33 SWGAEYIAADVVRFRLWATGQQKVMLRLA-G------------------------------------------------- 62 (618)
T ss_dssp SSEEEEEETTEEEEEEECTTCSCEEEEET-T-------------------------------------------------
T ss_pred CCCceEecCCcEEEEEECCCCCEEEEEEC-C-------------------------------------------------
Confidence 69999955566999999999999999981 1
Q ss_pred ccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEE
Q psy9001 776 LERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATY 854 (1351)
Q Consensus 776 ~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~ 854 (1351)
..++|++ +.|+| ++++++...| ..|+|+|. +| ..++||||++
T Consensus 63 ---------~~~~m~~~~~g~~--------------~~~~~~~~~g-------~~Y~y~v~--~~-----~~~~DP~a~~ 105 (618)
T 3m07_A 63 ---------KDQEMQANGDGWF--------------TLDVAGVTPG-------TEYNFVLS--DG-----MVVPDPASRA 105 (618)
T ss_dssp ---------EEEECEECSTTEE--------------EEEEETCCTT-------CEEEEEET--TS-----CEECCTTCSC
T ss_pred ---------CcccCeecCCEEE--------------EEEeCCCCCC-------CEEEEEEe--CC-----eEecccccee
Confidence 1256765 58999 7888876655 66799885 45 3679999999
Q ss_pred EecCC-CCCeeeeeeeeCCCCCCCCccccCCC-CCC-CCceEEEeecCCcccCCCcccccccccccccceeccCCCcccc
Q psy9001 855 VTEPP-VVGHAYEQRIWNPKPQDKHKWTSSKP-KKP-ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWN 931 (1351)
Q Consensus 855 v~~~~-~~~~~~d~~~~~p~~~~~~~w~~~~p-~~p-~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~ 931 (1351)
+.... ..++|+|. +.|+|+.+.. .+| ++++|||+|||.||. .|+|.++++. ||+|++|| |+
T Consensus 106 ~~~~~~~~s~v~d~--------~~~~w~~~~~~~~~~~~~~iYe~~v~~f~~---~G~~~~~~~~-L~yl~~lG-v~--- 169 (618)
T 3m07_A 106 QKTDVNGPSYVVDP--------GSYTWRNTGWKGSRWEQAVVYEMHTGTFTP---EGTFRAAIAK-LPYLAELG-VT--- 169 (618)
T ss_dssp BSSSTTSCEECCCT--------TSSCCSCTTCCCCCGGGCCEEEECHHHHSS---SCSHHHHHTT-HHHHHHHT-CC---
T ss_pred eecCCCCCEEEEcC--------ccCCCCCccccCCChhhCeEEEEehhhcCC---CCCHHHHHHH-HHHHHHcC-CC---
Confidence 76432 23555543 3588988764 344 899999999999986 4888888764 58888877 33
Q ss_pred cccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCC
Q psy9001 932 REEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFG 1011 (1351)
Q Consensus 932 ~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~ 1011 (1351)
.++|+ +..+ +.
T Consensus 170 ------------~v~l~--------------------------------------------------Pi~~-------~~ 180 (618)
T 3m07_A 170 ------------VIEVM--------------------------------------------------PVAQ-------FG 180 (618)
T ss_dssp ------------EEEEC--------------------------------------------------CCEE-------CS
T ss_pred ------------EEEeC--------------------------------------------------Chhc-------cC
Confidence 22332 0111 11
Q ss_pred Ccccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCC
Q psy9001 1012 TPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDS 1090 (1351)
Q Consensus 1012 sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~ 1090 (1351)
+..++|| ++|||+++|+|||++|||+||++||++||+||||+|+||++.++ .++..+ .+.||+.+ ....| +
T Consensus 181 ~~~~~GY~~~~~~~~~~~~G~~~~~~~lv~~~H~~Gi~VilD~V~NH~~~~~-~~~~~~---~~~~~~~~---~~~~w-g 252 (618)
T 3m07_A 181 GERGWGYDGVLLYAPHSAYGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGPEG-NYLPLL---APAFFHKE---RMTPW-G 252 (618)
T ss_dssp SSCCCSTTCCEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSCCCSSS-CCHHHH---CGGGEEEE---EEETT-E
T ss_pred CCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEeecCccCCCCc-cccccc---CchhhcCC---CCCCC-C
Confidence 1246788 88999999999999999999999999999999999999999876 333322 23455432 12334 3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhC
Q psy9001 1091 RLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY 1170 (1351)
Q Consensus 1091 ~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~ 1170 (1351)
++||+++|+||++|+++++||+++|||||||||++.+|. +..+..||+++++.+++..
T Consensus 253 ~~ln~~~p~V~~~i~~~~~~w~~~~gvDGfR~D~~~~~~----------------------~~~~~~f~~~l~~~v~~~~ 310 (618)
T 3m07_A 253 NGIAYDVDAVRRYIIEAPLYWLTEYHLDGLRFDAIDQIE----------------------DSSARHVLVEIAQRIREDI 310 (618)
T ss_dssp EEECTTSHHHHHHHHHHHHHHHHHTTCSEEEETTGGGCC----------------------CCSSSCHHHHHHHHHHHHC
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHHhCccEEEecchhhhc----------------------ccchHHHHHHHHHHHHHhC
Confidence 579999999999999999999999999999999999883 1224578999999999998
Q ss_pred CC--eEEEEccCCCCCCcccccccCCcc-cccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccc
Q psy9001 1171 PE--IITIAEDVSGMPASCRPVTEGGTG-FDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYE 1247 (1351)
Q Consensus 1171 Pd--~ilIaE~~~~~p~~~~p~~~gg~G-Fdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~ 1247 (1351)
|+ +++|||.|.+.+.+..+...|+.| ||.+|+..+|+. ......++..+.|.+...+...... ..+.+++.+.
T Consensus 311 p~~~~~li~E~~~~~~~~l~~~~~g~~g~~d~~~n~~~~~~--l~~~~~g~~~~~~~~~~~~~~~~l~--~~l~~~f~~~ 386 (618)
T 3m07_A 311 TDRPIHLTTEDSRNIISLHPRDQDGNAPLFTAEWNDDFHNA--VHVFATGETQAYYNDFADAPEKHLA--RALAEGFAYQ 386 (618)
T ss_dssp CSSCCEEEECCSSCCCTTSCCCTTSCCSSCSEEECHHHHHH--HHHHHHCCCSGGGGGGCSCHHHHHH--HHHHHSCSCS
T ss_pred CCCCEEEEEEecCCchhhhcccccCCccccceeechhHHHH--HHHHhcCCccchhhhcccCcHHHHH--HHHHHhhccC
Confidence 76 999999999888888877777775 998888776651 1111122222222211100000000 0111223333
Q ss_pred cccCCcccccCccc-cccCCCCccceeeecccCCCCCcC--CcccccccCCHHHHHHHHHHHHccCCccEEEee-cccC
Q psy9001 1248 TYPEPWNNRRNSIK-LYLPTRTGIIDEVNLLNNVREERN--NENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEK 1322 (1351)
Q Consensus 1248 ~~~~~~~~r~~s~~-~y~p~~~~~~~~vnfv~nHD~~rn--~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~ 1322 (1351)
.....+.++..+.. ...| ....+||++|||+.+| .+.|+......+++++|++++||+||+|||||| |+..
T Consensus 387 g~~s~~~~~~~G~~~~~~~----~~~~v~fl~NHD~~gnr~~G~Rl~~~~~~~~~~~a~alllt~PG~P~iy~G~E~G~ 461 (618)
T 3m07_A 387 GEISPQTGEPRGVKSTGQP----PVAFVDFIQNHDQVGNRAQGDRLITLAGAERTKVLLATLLLSPHIPLLFMGEEYGE 461 (618)
T ss_dssp SCBCTTTSSBCCCCCTTSC----GGGEEECSCCHHHHHTSTTCCCHHHHHCHHHHHHHHHHHHHSSSEEEEETTGGGTC
T ss_pred cccccccccccCCccccCC----hhhheeeecccccccccccccchhhhcCHHHHHHHHHHHHhCCCcCEEecchhhCC
Confidence 22222333321111 1111 1223899999999554 556777777788999999999999999999999 5544
|
| >1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-49 Score=504.84 Aligned_cols=290 Identities=16% Similarity=0.212 Sum_probs=215.2
Q ss_pred cccccCce--eEEE-----EEEEEEEeecCCCCc----cccceeecCCCeEEEEcCCCCCCCcccCccc-EEEEEEEec-
Q psy9001 62 VDECHKAG--LLCF-----MHVVCAAGDFNNWNR----EEFAYKKLDFGKWELVLPPNPDGSCKLTHLS-QVKLVVRNQ- 128 (1351)
Q Consensus 62 ~~~~~~~g--v~F~-----A~~V~LvGDFN~Wd~----~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~-~Y~y~i~~~- 128 (1351)
+......| |+|+ |++|+|++ |+.|+. ..++|.+.++|+|+++||+...+.+.+ +|. +|+|+|++.
T Consensus 8 Ga~~~~~g~~~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~~~~~~-~g~y~Y~y~v~g~~ 85 (750)
T 1bf2_A 8 GASYDAQQANITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPAGSGVWAVTVPVSSIKAAGI-TGAVYYGYRAWGPN 85 (750)
T ss_dssp EEEECTTSSEEEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEECSTTEEEEEEEHHHHHHTTC-CSCCEEEEEEEBTT
T ss_pred CcEEeCCCCEEEEEEECCCCCEEEEEE-EccCCCCccceEEecccCCCCEEEEEECCcccccccC-CCCEEEEEEEEeee
Confidence 33445678 9999 99999998 888764 468999888899999999865211111 567 999999963
Q ss_pred ---------------------CCcee----eccCCcceEEecCCCCc-----cc----------------eeeeeeCCCC
Q psy9001 129 ---------------------HGHLL----DRLSPWATYVTEPPVVG-----HA----------------YEQRIWNPKP 162 (1351)
Q Consensus 129 ---------------------~g~~~----~~~DPyA~~~~~~~~~~-----~~----------------~~~~~~~p~~ 162 (1351)
+|+++ +++||||++++.++..+ .+ ..+++++|
T Consensus 86 ~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~s~v~~~-- 163 (750)
T 1bf2_A 86 WPYASNWGKGSQAGFVSDVDANGDRFNPNKLLLDPYAQEVSQDPLNPSNQNGNVFASGASYRTTDSGIYAPKGVVLVP-- 163 (750)
T ss_dssp BCCCTTCCTTCCTTCCCSSCTTCCCCCTTSCBCCTTCSCBSCCSSCSSCCCGGGGBCSTTTTTCCCTTTSCCEECCCC--
T ss_pred ccccccccccccccccccccccCcccCCCceecCcCcceeccCCCCcccccccccccccccccccccccccceEEeCC--
Confidence 45432 68899999998655321 11 12445555
Q ss_pred CCCCccCCCCCC-CCCCceEEEEecCCccCC------CCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCcc
Q psy9001 163 QDKHKWTSSKPK-KPDNLKIYESHVGICTQE------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMG 235 (1351)
Q Consensus 163 ~~~~~w~~~~p~-~~~~~vIYE~hvr~ft~~------~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~ 235 (1351)
.|+|.+.+|. .+++++|||+|||+|+.. ...|+|++|+++ |||||+||||+ |||||||++..
T Consensus 164 --~~~W~d~~~~~~~~~~vIYe~hv~~f~~~~~~~~~~~~Gt~~gl~~~-l~yLk~LGvt~----V~L~Pi~~~~~---- 232 (750)
T 1bf2_A 164 --STQSTGTKPTRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLK-ASYLASLGVTA----VEFLPVQETQN---- 232 (750)
T ss_dssp --CCCCCCCCCCCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHT-HHHHHHHTCCE----EEESCCBCBSC----
T ss_pred --CCCCCcCCCCCCccccEEEEEEhhHhhCcCCCCCccCCcCHHHHHHH-HHHHHHcCCCE----EEECCcccCcc----
Confidence 3899955443 568999999999999753 247999999999 99999999999 99999775311
Q ss_pred ceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCC
Q psy9001 236 NIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGL 315 (1351)
Q Consensus 236 ~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~ 315 (1351)
+....+. ......++|||++.+|| +|+ ++
T Consensus 233 -------~~~~~~~----~~~g~~~~wGY~~~dy~---------------------~~~-------------------~~ 261 (750)
T 1bf2_A 233 -------DANDVVP----NSDANQNYWGYMTENYF---------------------SPD-------------------RR 261 (750)
T ss_dssp -------TTTTSST----TCCTTCCCSCCCBSCSS---------------------CBC-------------------GG
T ss_pred -------ccccccc----cccccccccCcCccccc---------------------ccC-------------------cc
Confidence 0000000 01123467999999999 787 56
Q ss_pred CCC-------HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCc--------ccCCCCC-CcCcccCC-CCCCCCCC--
Q psy9001 316 FGT-------PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL--------NEFDGTQ-ACFFHDGP-RGTHPLWD-- 376 (1351)
Q Consensus 316 ~G~-------~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~--------~~f~g~~-~~yy~~~~-~~~~~~w~-- 376 (1351)
||+ ++|||+||++||++||+||||||+||++.++.++. ..|.+.+ ..||+..+ .+.+.+|.
T Consensus 262 yGt~~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~d~~~~p~~~~~~~d~~~~y~~~~~~~~~~~~~g~ 341 (750)
T 1bf2_A 262 YAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYDNTGI 341 (750)
T ss_dssp GCSCCSTTHHHHHHHHHHHHHHHTTCEEEEEECCSSCTTCSBSSSSCSSCBBCSSHHHHHHHHHBCBCTTSSSBCCSSSS
T ss_pred ccCCCCCccHHHHHHHHHHHHHHCCCEEEEEEecccccCcccccccccccCCCcccccCCCCcceEECCCCCceecCCCc
Confidence 666 99999999999999999999999999999876651 1122211 23555443 23444453
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccccc
Q psy9001 377 SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLY 417 (1351)
Q Consensus 377 ~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~ 417 (1351)
+++||+++|+|+++|+++++||++||||||||||+|..|..
T Consensus 342 ~~~ln~~~p~V~~~i~d~l~~W~~e~gvDGfR~D~a~~l~~ 382 (750)
T 1bf2_A 342 GANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGN 382 (750)
T ss_dssp SCCBCTTSHHHHHHHHHHHHHHHHTSCCCEEEETTGGGGGB
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhcCc
Confidence 47999999999999999999999999999999999998843
|
| >2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=506.00 Aligned_cols=453 Identities=20% Similarity=0.286 Sum_probs=281.9
Q ss_pred ccccceee-cCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccc
Q psy9001 695 NKYGIHVQ-ADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELH 773 (1351)
Q Consensus 695 ~~~G~~~~-~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (1351)
..+|+++. .+++++|++|||+|++|.|++|+.. ..
T Consensus 18 ~~lGa~~~~~~~g~~F~vwap~A~~V~l~lf~~~-------------------------~~------------------- 53 (718)
T 2vr5_A 18 YPLGSNWIEDDDGVNFSLFSENAEKVELLLYSLT-------------------------NQ------------------- 53 (718)
T ss_dssp CSSEEEEEGGGTEEEEEEECSSCSEEEEEECCSS-------------------------CC-------------------
T ss_pred CCCcceEeeCCCeEEEEEECCCCCEEEEEEEcCC-------------------------CC-------------------
Confidence 36999983 2345999999999999999995320 00
Q ss_pred ccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEec----CCcee-eEEEe
Q psy9001 774 KLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRR----YGLMV-NFLEQ 847 (1351)
Q Consensus 774 ~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~----~~~~~-~~~~~ 847 (1351)
.. ....++|.+ ..|+| +++|++...| ..|+|+|... .|... .....
T Consensus 54 ----~~---~~~~~~m~~~~~gvw--------------~~~v~~~~~g-------~~Y~y~v~g~~~p~~g~~~~~~~~~ 105 (718)
T 2vr5_A 54 ----KY---PKEIIEVKNKTGDIW--------------HVFVPGLRPG-------QLYAYRVYGPYKPELGLRFNPNKVL 105 (718)
T ss_dssp ----SS---CSEEEEECEESSSEE--------------EEEEETCCTT-------CEEEEEEECCEETTTTEECCTTSCB
T ss_pred ----CC---cceEEeCccCCCCEE--------------EEEeCCCCCC-------CEEEEEEeeecCcccCcccCCCceE
Confidence 00 013467865 58999 8888876555 6679999743 34100 01267
Q ss_pred cCcceEEEecCCCCC------------------------eeeeeeeeCCCCCCCCccccC---C-CCCC-CCceEEEeec
Q psy9001 848 LSPWATYVTEPPVVG------------------------HAYEQRIWNPKPQDKHKWTSS---K-PKKP-ENLKIYESHV 898 (1351)
Q Consensus 848 ~dPya~~v~~~~~~~------------------------~~~d~~~~~p~~~~~~~w~~~---~-p~~p-~d~iIYE~HV 898 (1351)
+||||+++..+..++ ......+++| .|+|+.+ + |..+ ++++|||+||
T Consensus 106 ~DPya~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~s~v~d~----~~~W~~~~~~~~~~~~~~~~vIYeihv 181 (718)
T 2vr5_A 106 IDPYAKAINGSVIWNDAVFGYKIGDQNQDLTYDERDSGEYVPKSVVINP----YFEWDDEDFIKGKKVPLKDTVIYEVHV 181 (718)
T ss_dssp CCTTCSCBCSCCCCCGGGSSSCSSCTTTTTSCCCCCCTTTSCCEECCCC----CCCCTTGGGGSSSCCCTTSCCEEEECT
T ss_pred cCcCccccccCccccccccccccCCcccccccccccccccccceEEecC----CcCCCccccccCCCCChhHCEEEEEEc
Confidence 999999998543211 0001222233 3889887 5 3344 8999999999
Q ss_pred CCccc-CC-----Ccccccccccc-cccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCC
Q psy9001 899 GICTQ-EQ-----KCASYEDFVRV-VIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLD 971 (1351)
Q Consensus 899 ~~~s~-~~-----~~gty~~f~~~-~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d 971 (1351)
|.|+. ++ ..|+|++++++ .|++||+|| ++.++|+ | .+.+..+..
T Consensus 182 ~~f~~~~~~~~~~~~Gt~~gi~~~~~l~yLk~LG----------------vt~I~L~-P------i~~~~~~~~------ 232 (718)
T 2vr5_A 182 KGFTKLRLDLPENIRGTYEGLASEQMISYLKDLG----------------ITTVELM-P------VFHFIDQRF------ 232 (718)
T ss_dssp TTTTTTCTTSCTTSTTSHHHHTSHHHHHHHHHHT----------------CCEEEEC-C------CBCBCCCHH------
T ss_pred chhhcCCCCCCcccCcCHHHHhcchhhHHHHHcC----------------CCeEEEe-C------CEecCcccc------
Confidence 99996 33 35777777653 466666666 3333443 1 011000000
Q ss_pred ccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCC-------HHHHHHHHHHHH
Q psy9001 972 FGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGT-------PEQLKYLVDECH 1043 (1351)
Q Consensus 972 ~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt-------~edfK~LV~~aH 1043 (1351)
....| ...+||| ++||++++|+||| ++|||+||++||
T Consensus 233 ----------------------------~~~~g-------~~~~wGY~~~~y~~~~~~yGt~~~~~~~~~dfk~lv~~~H 277 (718)
T 2vr5_A 233 ----------------------------LTDKG-------LTNYWGYDPINFFSPECRYSSTGCLGGQVLSFKKMVNELH 277 (718)
T ss_dssp ----------------------------HHTTT-------CCCSSCCCBSCSSSBCGGGCSSCTTTHHHHHHHHHHHHHH
T ss_pred ----------------------------ccccC-------CcCccCcCcccCcccChhhcCCCCCCchHHHHHHHHHHHH
Confidence 00001 1135899 9999999999999 899999999999
Q ss_pred HcCCEEEEEeecccccCCccccC-cCCCCC-CCccccCCCCC--CCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHhCC
Q psy9001 1044 KAGLYVLLDVVHSHASKNVLDGL-NEFDGT-QACFFHDGPRG--THPLW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQF 1117 (1351)
Q Consensus 1044 ~~GI~VILDVV~NHts~~~~~~l-~~~dg~-~~~yf~~~~~g--~~~~w--~~~dlN~~np~Vr~~lid~l~yWl~eygV 1117 (1351)
++||+||||||+||++.++..+. ..+.+. ...||+..+.+ .+.+| ++++||++||+||++|+++++||++||||
T Consensus 278 ~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gv 357 (718)
T 2vr5_A 278 NAGIEVIIDVVYNHTAEGNHLGPTLSFRGIDNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHV 357 (718)
T ss_dssp TTTCEEEEEECCSCCSSCSTTSCCSSHHHHHSTTTBCBCTTTSSSBCCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCEEEEEeccCcccCccccCccccccCCCCCcceEeCCCCCceeecCCCccCeecCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999998874321 111111 23566543322 23333 46799999999999999999999999999
Q ss_pred CeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCccc
Q psy9001 1118 DGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGF 1197 (1351)
Q Consensus 1118 DGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GF 1197 (1351)
||||||+|.+|.+.... + .....++++++.. ...|++++|||.|...+. +
T Consensus 358 DGfR~D~~~~l~~~~~~----~-------------~~~~~~~~~i~~~--~~~~~~~liaE~w~~~~~--------~--- 407 (718)
T 2vr5_A 358 DGFRFDLAAALARELYS----V-------------NMLNTFFIALQQD--PILSQVKLIAEPWDVGQG--------G--- 407 (718)
T ss_dssp CEEEETTGGGGGBSSSS----B-------------CTTCHHHHHHHHC--TTGGGSEEEECCBCSSTT--------C---
T ss_pred CEEEEcchhhhhhccCC----c-------------cchHHHHHHHHhC--cccCCcEEEecccccCCC--------c---
Confidence 99999999988432110 0 0122355555442 357899999998753221 1
Q ss_pred ccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccc-cCccccccCCCCccceeeec
Q psy9001 1198 DYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR-RNSIKLYLPTRTGIIDEVNL 1276 (1351)
Q Consensus 1198 dy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r-~~s~~~y~p~~~~~~~~vnf 1276 (1351)
|+.+. |+..+++||+.|++++ ++|.+++....... ..+ ..+...|......+...+||
T Consensus 408 -~~~~~--------f~~~~~~wn~~~r~~~-------~~f~~g~~~~~~~~-----~~~l~~~~~~y~~~~~~p~~~vnf 466 (718)
T 2vr5_A 408 -YQVGN--------FPYQWAEWNGKYRDSI-------RRFWRGEALPYSEI-----ANRLLGSPDIYLGNNKTPFASINY 466 (718)
T ss_dssp -BCTTC--------SCTTEEEECHHHHHHH-------HHHHHTCCEEHHHH-----HHHHTTCHHHHGGGTCCGGGEEEC
T ss_pred -ccccC--------CchhHHHHhHHHHHHH-------HHHHcCCcchHHHH-----HHHHhcchhhhcccCCCcceeeee
Confidence 22221 3334578899999888 34544443211111 011 11222332222223334999
Q ss_pred ccCCCCCcC-------------Cccc--------cccc--------------CCHHHHHHHHHHHHccCCccEEEee-cc
Q psy9001 1277 LNNVREERN-------------NENN--------MKRY--------------IQTESNMNGFGIQTLPTQSPLYLVA-KI 1320 (1351)
Q Consensus 1277 v~nHD~~rn-------------~~~r--------~~~~--------------~~~~~~r~A~allltspGiP~If~g-~~ 1320 (1351)
++|||+.+. .+++ .... .+.+++|+|++++||+||+|||||| |+
T Consensus 467 ~~~HD~~~l~dl~~~~~k~~~~~g~~~~dg~~~n~sw~~~~~g~~~~~~~~~~~~~~~r~a~a~ll~~~G~P~iy~GdE~ 546 (718)
T 2vr5_A 467 VTSHDGFTLEDLVSYNQKHNEANGFNNQDGMNENYSWNCGAEGPTNDQNVVICREKQKRNFMITLLVSQGTPMILGGDEL 546 (718)
T ss_dssp SCCSSSCCHHHHSSCSSCCCGGGSSTTCCSCSCCCCCCSSSSSSCCCHHHHHHHHHHHHHHHHHHTTSSSEEEEETTTTT
T ss_pred eecCCCCCHHHHHHHhhhhhhhcccccccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCcEEEechhh
Confidence 999998632 0000 0000 0136789999999999999999999 66
Q ss_pred cCC--CCccc----eeeccCCcce
Q psy9001 1321 EKP--CSTRE----VVKAPLPFGV 1338 (1351)
Q Consensus 1321 ~~~--~~~~~----~~~~p~~~~~ 1338 (1351)
... |.+.. .-+++|+|..
T Consensus 547 G~~~~G~~~~y~~~~~~~~~~W~~ 570 (718)
T 2vr5_A 547 SRTQRGNNNAFCQDNEITWFDWNL 570 (718)
T ss_dssp TCCCTTCSCCTTCCSTTTSCCCCC
T ss_pred cccCCCCCCcccCCccccccCccc
Confidence 655 33222 3457799974
|
| >3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-49 Score=504.21 Aligned_cols=446 Identities=17% Similarity=0.195 Sum_probs=278.6
Q ss_pred cccceeecCCc-EEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcccccccc
Q psy9001 696 KYGIHVQADNS-VRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHK 774 (1351)
Q Consensus 696 ~~G~~~~~~~~-~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1351)
.+|+++.++|. +.|++|||+|++|+|++|..- ++..
T Consensus 134 ~lGa~~~~~g~~v~F~vwAP~A~~V~L~l~d~~--------------~~~~----------------------------- 170 (877)
T 3faw_A 134 NLGAVLNQDGSKVEASLWSPSADSVTMIIYDKD--------------NQNR----------------------------- 170 (877)
T ss_dssp CCEEEECTTSSCEEEEEECTTCSEEEEEEEETT--------------EEEE-----------------------------
T ss_pred CCCCEEeCCCCEEEEEEECCCCCEEEEEEEeCC--------------CCcc-----------------------------
Confidence 68999998885 999999999999999995210 0000
Q ss_pred cccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceE
Q psy9001 775 LLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWAT 853 (1351)
Q Consensus 775 ~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~ 853 (1351)
....++|.+ ..|+| +++++.. .|. ...+|..|+|+|... + .....+|||||
T Consensus 171 --------~~~~~~m~~~~~gvW--------------~~~v~~~-~G~-~~~~g~~Y~yrv~~~-~---~~~~~~DPYA~ 222 (877)
T 3faw_A 171 --------VVATTPLVKNNKGVW--------------QTILDTK-LGI-KNYTGYYYLYEIKRG-K---DKVKILDPYAK 222 (877)
T ss_dssp --------EEEEEECEECTTSEE--------------EEEECGG-GTC-SCCTTCEEEEEEEET-T---EEEEECCTTCS
T ss_pred --------ceeeeccccCCCCEE--------------EEEECCC-CCC-ccCCCeEEEEEEeeC-C---ceeEecCccce
Confidence 012467865 48999 6666311 010 011356789999754 3 47789999999
Q ss_pred EEec-C---------CCCCeeeeeeeeCCCCCCCCccccCCC-CCCCCceEEEeecCCcccCCC--------cccccccc
Q psy9001 854 YVTE-P---------PVVGHAYEQRIWNPKPQDKHKWTSSKP-KKPENLKIYESHVGICTQEQK--------CASYEDFV 914 (1351)
Q Consensus 854 ~v~~-~---------~~~~~~~d~~~~~p~~~~~~~w~~~~p-~~p~d~iIYE~HV~~~s~~~~--------~gty~~f~ 914 (1351)
+++. + ..+++|+|...+.|.. ..|...++ ..+++++|||+|||+||.++. .|+|.+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~s~vvd~~~~~~~~---~~~~~~p~~~~~~~~vIYElhvr~ft~~~~~~~~~~~~~Gt~~gl~ 299 (877)
T 3faw_A 223 SLAEWDSNTVNDDIKTAKAAFVNPSQLGPQN---LSFAKIANFKGRQDAVIYEAHVRDFTSDQSLDGKLKNQLGTFAAFS 299 (877)
T ss_dssp CBCCCBGGGCCSSCCSCCEECCCGGGSSCTT---CCCCCCTTCCSGGGCEEEEECTTGGGCCGGGTTTCSSCTTSHHHHG
T ss_pred eccccCcccccccccCCceEEecccccCCCc---cccccCCCCCCccccEEEEEEchHhcCCCCCCccccCCCCCHHHHH
Confidence 9974 1 2357788876555531 22322222 234899999999999997643 25555555
Q ss_pred cccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCc
Q psy9001 915 RVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQ 994 (1351)
Q Consensus 915 ~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~ 994 (1351)
+. ||+|++|| ++.++|+ | .+.+ ++..+..+ .
T Consensus 300 ~~-L~yLk~LG----------------vtaV~L~-P------i~~~------------~~~~e~~~-~------------ 330 (877)
T 3faw_A 300 EK-LDYLQKLG----------------VTHIQLL-P------VLSY------------FYVNEMDK-S------------ 330 (877)
T ss_dssp GG-HHHHHHHT----------------CSEEEES-C------CBCB------------SSCBTTCC-C------------
T ss_pred HH-HHHHHHcC----------------CCEEEEc-c------hhcc------------cccccccc-c------------
Confidence 42 35555555 4444444 1 1111 11000000 0
Q ss_pred ceeeecccCCCCCCCCCCcccccc-ccccccccCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccCCcccc
Q psy9001 995 VKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGT--------PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG 1065 (1351)
Q Consensus 995 ~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt--------~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~ 1065 (1351)
....+.+ ..+..++|| ..+|++++|+||+ ++|||+||++||++||+||||||+||++.++
T Consensus 331 -------~~~~~~~-~~~~ynwGY~~~~~~a~~~~yGt~p~~~~~~~~efk~lV~~~H~~GI~VILDvV~NH~a~~~--- 399 (877)
T 3faw_A 331 -------RSTAYTS-SDNNYNWGYDPQSYFALSGMYSEKPKDPSARIAELKQLIHDIHKRGMGVILDVVYNHTAKTY--- 399 (877)
T ss_dssp -------CCCSCCS-SSCSCCCSCSBSCSSSBCSTTCSCTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTCCSCTH---
T ss_pred -------ccccccC-CCCCCccCcCcCccccccccccCCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeeccccCcc---
Confidence 0000000 011234899 8999999999999 7999999999999999999999999999976
Q ss_pred CcCCCCCCCcccc-CCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCc
Q psy9001 1066 LNEFDGTQACFFH-DGPRGT-HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY 1143 (1351)
Q Consensus 1066 l~~~dg~~~~yf~-~~~~g~-~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~ 1143 (1351)
.|.+..+.||+ .+..|. ..+|+++++|+++|+||++|+++++||++||||||||||+|+++
T Consensus 400 --~~~~~~p~yy~~~~~dg~~~~~~~g~~ln~~~p~Vr~~i~d~l~~Wv~e~gVDGFRfD~a~~~--------------- 462 (877)
T 3faw_A 400 --LFEDIEPNYYHFMNEDGSPRESFGGGRLGTTHAMSRRVLVDSIKYLTSEFKVDGFRFDMMGDH--------------- 462 (877)
T ss_dssp --HHHTTSTTTSBCBCTTSCBCEETTEECBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS---------------
T ss_pred --ccccCCCceeeeeCCCCCeeccCCCcccccCCHHHHHHHHHHHHHHHHHcCCcEEEEecCCcC---------------
Confidence 23344455655 344443 45677889999999999999999999999999999999999876
Q ss_pred ccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchh
Q psy9001 1144 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKY 1223 (1351)
Q Consensus 1144 ~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~ 1223 (1351)
+..+|+.+...+++.+|++++|||.|........ ....+|+..+.. +.-..+.|.+.+
T Consensus 463 -----------~~~~~~~~~~~~~~~~P~~~ligE~Wd~~~g~~~---~~~~~~~~~~~~--------~~~~i~~f~d~i 520 (877)
T 3faw_A 463 -----------DAAAIELAYKEAKAINPNMIMIGEGWRTFQGDQG---KPVKPADQDWMK--------STDTVGVFSDDI 520 (877)
T ss_dssp -----------BHHHHHHHHHHHHHHCTTCEEEECCCSCCCCBTT---BCCCBSSGGGGG--------GCSSEEEECHHH
T ss_pred -----------CHHHHHHHHHHHHhhCCCcEEEEccccccccccc---ccccccchhhhh--------cCCccchhhHHH
Confidence 4567889999999999999999999863211110 001122211111 111123466778
Q ss_pred HhhhccCC--CCCCCccccCCCcccccccCCcccc-cCccccccCCCCccceeeecccCCCCCcCCcccccc--------
Q psy9001 1224 KVVLDSDC--SHFGGFNRLDPGTVYETYPEPWNNR-RNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKR-------- 1292 (1351)
Q Consensus 1224 rd~l~~d~--~~~~gf~r~~~~~~~~~~~~~~~~r-~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~-------- 1292 (1351)
|++++++. ..-.+|..+........ ..+ .++...|.. ..+..+|||++|||..+... .+..
T Consensus 521 R~~~rg~~~~~~~~gf~~g~~~~l~~~-----~~~l~~~~~~~~~--~~P~~sVnFV~nHD~~tl~D-lls~~~k~n~~~ 592 (877)
T 3faw_A 521 RNSLKSGFPNEGTPAFITGGPQSLQGI-----FKNIKAQPGNFEA--DSPGDVVQYIAAHDNLTLHD-VIAKSINKDPKV 592 (877)
T ss_dssp HHHHHCCTTCTTCCCGGGTCCEEHHHH-----HHHHTTCCSSSCC--SSGGGEEECSCCSSSSCHHH-HHHHHHTCCHHH
T ss_pred HHHHccccccccchhhhcCCcHHHHHH-----HHHhhcCcccccc--CCccceeeeeecccchhHHh-hhhhhhcCCccc
Confidence 88876432 01122222221111000 001 111122211 12344499999999876411 1100
Q ss_pred --cCCHHHHHHHHHHHHccCCccEEEee-cccC
Q psy9001 1293 --YIQTESNMNGFGIQTLPTQSPLYLVA-KIEK 1322 (1351)
Q Consensus 1293 --~~~~~~~r~A~allltspGiP~If~g-~~~~ 1322 (1351)
....++.++|++|+|++||+||||+| |+..
T Consensus 593 ~~~~~~~r~~lA~alllls~GiP~i~~GdE~gr 625 (877)
T 3faw_A 593 AEEDIHRRLRLGNVMILTSQGTAFIHSGQEYGR 625 (877)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSEEEEETTTTTTC
T ss_pred CHHHHHHHHHHHHHHHHhcCCccccccchhhhc
Confidence 00135788999999999999999999 4443
|
| >2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=509.99 Aligned_cols=319 Identities=20% Similarity=0.278 Sum_probs=226.1
Q ss_pred eeEEE-----EEEEEEEe-ecCCCCc--cccceeecCCCeEEEEcCCCC-CCCcccCcccEEEEEEEecCCceeeccCCc
Q psy9001 69 GLLCF-----MHVVCAAG-DFNNWNR--EEFAYKKLDFGKWELVLPPNP-DGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 139 (1351)
Q Consensus 69 gv~F~-----A~~V~LvG-DFN~Wd~--~~~~M~k~~~GvW~~~ip~~~-~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPy 139 (1351)
||+|+ |++|+|++ |+++|+. ..++|++..+|+|+++||+.. .|. ...+|.+|+|+|+. ++....++|||
T Consensus 332 gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~~g~-~~~~G~~Y~y~i~~-~~~~~~~~DPY 409 (1014)
T 2ya1_A 332 QVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGERGTWKQTLDSTNKLGI-TDFTGYYYQYQIER-QGKTVLALDPY 409 (1014)
T ss_dssp EEEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECGGGEEEEEECTTCSSCC-SCCTTCEEEEEEEE-TTEEEEECCTT
T ss_pred EEEEEEECCCCCEEEEEEEECCCCCccceEEecccCCCCEEEEEEcccccCCc-cccCCcEEEEEEEe-CCeEEEecCcc
Confidence 59999 99999999 9998874 469999877899999999642 120 11367899999985 56666789999
Q ss_pred ceEEecCC-C------CccceeeeeeCCCCC--CCCccCCCCC-CCCCCceEEEEecCCccCC--------CCCCCHHHH
Q psy9001 140 ATYVTEPP-V------VGHAYEQRIWNPKPQ--DKHKWTSSKP-KKPDNLKIYESHVGICTQE--------QKCASYEDF 201 (1351)
Q Consensus 140 A~~~~~~~-~------~~~~~~~~~~~p~~~--~~~~w~~~~p-~~~~~~vIYE~hvr~ft~~--------~~~G~~~gi 201 (1351)
|+++.... . ...+..+.+++|... ..++|....+ ..+++++|||+|||+|+.+ ...|+|++|
T Consensus 410 a~~~~~~~~~~~~~~~~~~~~~s~vvd~~~~~~~~~~~~~~~~~~~~~~~vIYE~hv~~ft~~~~~~~~~~~~~Gt~~gl 489 (1014)
T 2ya1_A 410 AKSLAAWNSDDSKIDDAHKVAKAAFVDPAKLGPQDLTYGKIHNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAF 489 (1014)
T ss_dssp CSSBCCCBGGGTTSCGGGSSCCEECCCGGGSSCTTCCCCCCTTCSSGGGCCEEEECHHHHHCCGGGTTTCSSCTTSHHHH
T ss_pred ceeccccccccccccccCCcccEEEECchhcCCcccccccCccccCccccEEEEEecCCCCCCCCccccccCCCcCHHHH
Confidence 99876421 0 011223344454310 1234433222 2468999999999999742 135999999
Q ss_pred HHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccc
Q psy9001 202 VRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMS 281 (1351)
Q Consensus 202 ~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s 281 (1351)
+++ |||||+||||+ |||||||++.. ..+....+....+..+...++|||++.+||
T Consensus 490 ~~~-LdyLk~LGvta----V~L~Pv~~~~~---------~~e~~~~~~~~~y~~~~~~ynwGY~~~~y~----------- 544 (1014)
T 2ya1_A 490 IEK-LDYLKDLGVTH----IQLLPVLSYYF---------VNELKNHERLSDYASSNSNYNWGYDPQNYF----------- 544 (1014)
T ss_dssp HTT-HHHHHHHTCSE----EEESCCBCBSS---------CBGGGTTSCCCSCCSSSCSCCCSCSBSCSS-----------
T ss_pred HHH-hHHHHHcCCCe----EEecCcccccc---------cccccccccccccccCcCCcccCCCcCcCc-----------
Confidence 998 99999999999 99999775210 000000000001111222356999999999
Q ss_pred cCCCCchhcccccccCCCCccccccccccccCCCC--CCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCC
Q psy9001 282 TLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLF--GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGT 359 (1351)
Q Consensus 282 ~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~--G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~ 359 (1351)
+|+++|++. |.. ++++|||+||++||++||+||||||+||++.++ .|.+.
T Consensus 545 ----------a~~~~ygt~-------------p~~~~~~~~efk~lV~~~H~~GI~VIlDvV~NHt~~~~-----~~~~~ 596 (1014)
T 2ya1_A 545 ----------SLTGMYSSD-------------PKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVD-----LFEDL 596 (1014)
T ss_dssp ----------SBCSTTCSC-------------TTCTTHHHHHHHHHHHHHHTTTCEEEEEECTTCCSCHH-----HHHTT
T ss_pred ----------cccccccCC-------------CccccchHHHHHHHHHHHHHcCCEEEEEEecccccccc-----ccccC
Confidence 888666653 322 348999999999999999999999999999864 34555
Q ss_pred CCcCccc-CCCCC-CCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCc
Q psy9001 360 QACFFHD-GPRGT-HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN 437 (1351)
Q Consensus 360 ~~~yy~~-~~~~~-~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~ 437 (1351)
.+.||+. +.++. ...|+++.+|+.+|+||++|+++++||++||||||||||+|..+
T Consensus 597 ~~~yy~~~~~~g~~~~~~~~~~l~~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~~~~~---------------------- 654 (1014)
T 2ya1_A 597 EPNYYHFMDADGTPRTSFGGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDH---------------------- 654 (1014)
T ss_dssp STTTSBCBCTTCCBCEETTEECBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS----------------------
T ss_pred CCCeeEEeCCCCCcccCCCCCCcCcCCHHHHHHHHHHHHHHHHhcCceEEEEeCCCCC----------------------
Confidence 5556653 33332 34577788999999999999999999999999999999998754
Q ss_pred cCchHHHHHHHHHHHHHhhCCCeEEEEEcCC
Q psy9001 438 VDTDALIYLMVANKFLHDKYPEIITIAEDVS 468 (1351)
Q Consensus 438 ~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~ 468 (1351)
..++|+.++..+++.+|++++|||.|.
T Consensus 655 ----~~~~~~~~~~~~~~~~p~~~ligE~W~ 681 (1014)
T 2ya1_A 655 ----DAASIEEAYKAARALNPNLIMLGEGWR 681 (1014)
T ss_dssp ----BHHHHHHHHHHHHHHCTTCEEEECCCS
T ss_pred ----CHHHHHHHHHHHHHhCCCeEEEEeecc
Confidence 134566666677777777777777764
|
| >1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=507.54 Aligned_cols=479 Identities=16% Similarity=0.173 Sum_probs=286.8
Q ss_pred hccccceeecCCc-EEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcccccc
Q psy9001 694 YNKYGIHVQADNS-VRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPEL 772 (1351)
Q Consensus 694 y~~~G~~~~~~~~-~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (1351)
...+|+++..+|+ ++|++|||+|++|+|++|+.|..
T Consensus 4 ~~~lGa~~~~~g~~~~F~vwap~A~~V~l~l~~~~~~------------------------------------------- 40 (750)
T 1bf2_A 4 SMSLGASYDAQQANITFRVYSSQATRIVLYLYSAGYG------------------------------------------- 40 (750)
T ss_dssp TTCCEEEECTTSSEEEEEEECSSCSEEEEEEESSSSS-------------------------------------------
T ss_pred CcCCCcEEeCCCCEEEEEEECCCCCEEEEEEEccCCC-------------------------------------------
Confidence 4579999876442 99999999999999999643100
Q ss_pred cccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCC-CeEEEEEec-------------
Q psy9001 773 HKLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLN-PYQYEMKRR------------- 837 (1351)
Q Consensus 773 ~~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~~~~------------- 837 (1351)
.. ....++|.+ ..|+| +++|++...+.. .-+|. .|+|+|...
T Consensus 41 -----~~---~~~~~~m~~~~~gvW--------------~~~v~~~~~~~~-~~~g~y~Y~y~v~g~~~p~~~~~~~~~~ 97 (750)
T 1bf2_A 41 -----VQ---ESATYTLSPAGSGVW--------------AVTVPVSSIKAA-GITGAVYYGYRAWGPNWPYASNWGKGSQ 97 (750)
T ss_dssp -----CC---CSEEEECEECSTTEE--------------EEEEEHHHHHHT-TCCSCCEEEEEEEBTTBCCCTTCCTTCC
T ss_pred -----Cc---cceEEecccCCCCEE--------------EEEECCcccccc-cCCCCEEEEEEEEeeecccccccccccc
Confidence 00 113467855 57999 777776541111 01345 689999742
Q ss_pred ---------CCcee-eEEEecCcceEEEecCCCCC-----eee----------------eeeeeCCCCCCCCccccCCCC
Q psy9001 838 ---------YGLMV-NFLEQLSPWATYVTEPPVVG-----HAY----------------EQRIWNPKPQDKHKWTSSKPK 886 (1351)
Q Consensus 838 ---------~~~~~-~~~~~~dPya~~v~~~~~~~-----~~~----------------d~~~~~p~~~~~~~w~~~~p~ 886 (1351)
.|... ....++||||++++.+...+ .++ ...+++| .|+|+..+|.
T Consensus 98 ~~~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~s~v~~~----~~~W~d~~~~ 173 (750)
T 1bf2_A 98 AGFVSDVDANGDRFNPNKLLLDPYAQEVSQDPLNPSNQNGNVFASGASYRTTDSGIYAPKGVVLVP----STQSTGTKPT 173 (750)
T ss_dssp TTCCCSSCTTCCCCCTTSCBCCTTCSCBSCCSSCSSCCCGGGGBCSTTTTTCCCTTTSCCEECCCC----CCCCCCCCCC
T ss_pred ccccccccccCcccCCCceecCcCcceeccCCCCcccccccccccccccccccccccccceEEeCC----CCCCCcCCCC
Confidence 23100 01257899999999655433 111 1222333 3899943344
Q ss_pred CC-CCceEEEeecCCccc-CC-----CcccccccccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcc
Q psy9001 887 KP-ENLKIYESHVGICTQ-EQ-----KCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNN 959 (1351)
Q Consensus 887 ~p-~d~iIYE~HV~~~s~-~~-----~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~ 959 (1351)
.+ ++++|||+|||.|+. ++ ..|+|.++++. |++||+|| ++.++|+ | .+.
T Consensus 174 ~~~~~~vIYe~hv~~f~~~~~~~~~~~~Gt~~gl~~~-l~yLk~LG----------------vt~V~L~-P------i~~ 229 (750)
T 1bf2_A 174 RAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLK-ASYLASLG----------------VTAVEFL-P------VQE 229 (750)
T ss_dssp CCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHT-HHHHHHHT----------------CCEEEES-C------CBC
T ss_pred CCccccEEEEEEhhHhhCcCCCCCccCCcCHHHHHHH-HHHHHHcC----------------CCEEEEC-C------ccc
Confidence 45 899999999999997 33 25677766654 56666666 3334444 1 111
Q ss_pred cccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCC-------
Q psy9001 960 WNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGT------- 1031 (1351)
Q Consensus 960 ~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt------- 1031 (1351)
+..+.... . . +......+||| ++||++++|+|||
T Consensus 230 ~~~~~~~~---------------~----------------~-------~~~g~~~~wGY~~~dy~~~~~~yGt~~~~~~~ 271 (750)
T 1bf2_A 230 TQNDANDV---------------V----------------P-------NSDANQNYWGYMTENYFSPDRRYAYNKAAGGP 271 (750)
T ss_dssp BSCTTTTS---------------S----------------T-------TCCTTCCCSCCCBSCSSCBCGGGCSCCSTTHH
T ss_pred Cccccccc---------------c----------------c-------cccccccccCcCcccccccCccccCCCCCccH
Confidence 10000000 0 0 00011246899 9999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccC--------cCCCCCC-CccccCCC-CCCCCCC--CCCCCCCCCHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL--------NEFDGTQ-ACFFHDGP-RGTHPLW--DSRLFNYSEIE 1099 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l--------~~~dg~~-~~yf~~~~-~g~~~~w--~~~dlN~~np~ 1099 (1351)
++|||+||++||++||+||||||+||++.++..+. ..+.+.+ ..||+..+ .+.+.+| ++++||+++|+
T Consensus 272 ~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~~~d~~~~p~~~~~~~d~~~~y~~~~~~~~~~~~~g~~~~ln~~~p~ 351 (750)
T 1bf2_A 272 TAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNTV 351 (750)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSSCTTCSBSSSSCSSCBBCSSHHHHHHHHHBCBCTTSSSBCCSSSSSCCBCTTSHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCcccccccccccCCCcccccCCCCcceEECCCCCceecCCCcCCccccCCHH
Confidence 99999999999999999999999999999874320 0010011 23555443 2334444 45799999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChh----HHHHHHHHHHH-HHhhC--CC
Q psy9001 1100 VLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD----ALIYLMVANKF-LHDKY--PE 1172 (1351)
Q Consensus 1100 Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~----~~~fl~~~~~~-l~~~~--Pd 1172 (1351)
||++|+++++||++||||||||||+|.+|.........+.++. +.+++..+.. ...+++.++.. +++.. |+
T Consensus 352 V~~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~f~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~ 429 (750)
T 1bf2_A 352 AQNLIVDSLAYWANTMGVDGFRFDLASVLGNSCLNGAYTASAP--NCPNGGYNFDAADSNVAINRILREFTVRPAAGGSG 429 (750)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEETTGGGGGBCCSSSSCCTTST--TCTTCSCCBCTTCTTSHHHHHHHHSCBCCTTCCSS
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEechhhcCchhhhcccccccc--cccccccccccccchHHHHHHHHhCcchhhccCCC
Confidence 9999999999999999999999999998864311100000000 0000000111 13455555432 22335 99
Q ss_pred eEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCcccc---CCCcccccc
Q psy9001 1173 IITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRL---DPGTVYETY 1249 (1351)
Q Consensus 1173 ~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~---~~~~~~~~~ 1249 (1351)
+++|||.|...+. + |+.+. |+..+++||+.|++.+ +.|.++ +.+.....
T Consensus 430 ~~liaE~w~~~~~--------~----~~~~~--------F~~~~~~wn~~~rd~l-------~~f~~g~~~~~~~~~~l- 481 (750)
T 1bf2_A 430 LDLFAEPWAIGGN--------S----YQLGG--------FPQGWSEWNGLFRDSL-------RQAQNELGSMTIYVTQD- 481 (750)
T ss_dssp BEEEECCCCSSTT--------C----CCTTC--------SCTTCEEECHHHHHHH-------HHHHHCBTTBCCCHHHH-
T ss_pred ceEEeccccCCcc--------c----hhhcc--------CCccHHHHhHHHHHHH-------HHHhcCCCCCCCCHHHH-
Confidence 9999998753221 1 22222 4545688999999988 455554 32221111
Q ss_pred cCCcccc-cCccccccCCCCccceeeecccCCCCCcCC----------------cc-------ccccc-----------C
Q psy9001 1250 PEPWNNR-RNSIKLYLPTRTGIIDEVNLLNNVREERNN----------------EN-------NMKRY-----------I 1294 (1351)
Q Consensus 1250 ~~~~~~r-~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~----------------~~-------r~~~~-----------~ 1294 (1351)
..+ ..+...|......+..++||++|||+.+.. ++ +.... .
T Consensus 482 ----~~~l~~~~~~y~~~~~~p~~~vnfv~nHD~~~l~dl~s~~~~~n~~~~~~G~n~dG~~~n~s~n~g~~g~t~~~~~ 557 (750)
T 1bf2_A 482 ----ANDFSGSSNLFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWDQGMSAGTGAAVD 557 (750)
T ss_dssp ----HHHHTTCHHHHGGGTCCGGGEEECSCCSSSCCHHHHTTCSSCCCCCCTTSCCCCCCCSCCCCCCTTTTTTSCCHHH
T ss_pred ----HHHhhcchhhhccCCCCcceEEEEeecCCCCcHHHHHhhhcccchhhhhccCCCCCccccccccccccCCchhhHH
Confidence 111 122233432223344459999999976430 10 00000 1
Q ss_pred CHHHHHHHHHHHHccCCccEEEee-cccCC--CCc---c-ceeeccCCcce
Q psy9001 1295 QTESNMNGFGIQTLPTQSPLYLVA-KIEKP--CST---R-EVVKAPLPFGV 1338 (1351)
Q Consensus 1295 ~~~~~r~A~allltspGiP~If~g-~~~~~--~~~---~-~~~~~p~~~~~ 1338 (1351)
+.++.|+|++++||+||+|||||| |+... |.+ + ..-.|+++|..
T Consensus 558 r~~~~r~a~a~ll~~~G~P~i~~GdE~g~t~~G~~n~y~~~~~i~~~dW~~ 608 (750)
T 1bf2_A 558 QRRAARTGMAFEMLSAGTPLMQGGDEYLRTLQCNNNAYNLDSSANWLTYSW 608 (750)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEETTGGGTCCCTTCSCCTTCCSTTTSCCCCC
T ss_pred HHHHHHHHHHHHHHcCCcceeeechhhccCCCCCCCcccCCCcccccCCCc
Confidence 235789999999999999999999 55544 322 1 13456788873
|
| >1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-48 Score=489.75 Aligned_cols=414 Identities=13% Similarity=0.142 Sum_probs=289.7
Q ss_pred cCceeEEE---------EEEEEEEeecCCCCccccceee--c----CCCeEEEEcCCCCCCCcccCcccEEEEEEEecCC
Q psy9001 66 HKAGLLCF---------MHVVCAAGDFNNWNREEFAYKK--L----DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHG 130 (1351)
Q Consensus 66 ~~~gv~F~---------A~~V~LvGDFN~Wd~~~~~M~k--~----~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g 130 (1351)
..+||+|+ |++|+|+++||+ +...++|++ . ..|+|+++||+...| ..|+|+|.+.++
T Consensus 28 ~~~~v~f~v~~~~~ap~a~~V~l~~~~~~-~~~~~~m~~~~~~~~~~~~~w~~~i~~~~~g-------~~Y~f~i~~~~~ 99 (637)
T 1ji1_A 28 STQSVTLKLRTFKGDITSANIKYWDTADN-AFHWVPMVWDSNDPTGTFDYWKGTIPASPSI-------KYYRFQINDGTS 99 (637)
T ss_dssp TTCCEEEEEEEETTCCSEEEEEEEETTTT-EEEEEECEEEEECTTSSEEEEEEEECCCSSC-------EEEEEEEEETTE
T ss_pred CCCEEEEEEEEecCcCCeeEEEEEEecCC-CEEEEEeEEeeccccCCeeEEEEEEECCCce-------EEEEEEEEECCe
Confidence 45688887 689999998874 555699988 2 348999999987655 699999997654
Q ss_pred ceeeccCCcceEEecCCCCccceeeeeeCCCCCCCCccCCC--CCCCCCCceEEEEecCCccCCC---------------
Q psy9001 131 HLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSS--KPKKPDNLKIYESHVGICTQEQ--------------- 193 (1351)
Q Consensus 131 ~~~~~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~--~p~~~~~~vIYE~hvr~ft~~~--------------- 193 (1351)
.. ..+|.... .. +|. ...|.|... .|.++++.+|||+|++.|+..+
T Consensus 100 ~~--~~~~~g~~--~~------------~~~-~~~~~~~~~~~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~~~~~~ 162 (637)
T 1ji1_A 100 TA--WYNGNGPS--ST------------EPN-ADDFYIIPNFKTPDWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGT 162 (637)
T ss_dssp EE--EEETTEEE--SS------------CCS-SCCEEECTTCCCCHHHHHCCEEEECGGGTCCSCGGGCCCTTSCEETTE
T ss_pred EE--EEeCCccc--cc------------CCC-cceeEeecCCCCCchhhCCcEEEEecccccCCCCcccccccccccccc
Confidence 32 22332111 00 010 001233221 1223578999999999996221
Q ss_pred ------------------CC-----CCHHHHHHhhhHHHHH-cCCCcCceeEEEeecccccccCccceEEEccccccccc
Q psy9001 194 ------------------KC-----ASYEDFVRVVIPRIVK-QGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEK 249 (1351)
Q Consensus 194 ------------------~~-----G~~~gi~~~~L~yLk~-LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~ 249 (1351)
.. |+|+||+++ |||||+ ||||+ |||||||+ +
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~f~gG~~~gi~~~-LdyLk~~LGvt~----I~L~Pi~~--------------------~ 217 (637)
T 1ji1_A 163 PTEKKAWGSSVYADPGYDNSLVFFGGDLAGIDQK-LGYIKKTLGANI----LYLNPIFK--------------------A 217 (637)
T ss_dssp ECEECCTTSCCSCCTTSCGGGEECCCCHHHHHHT-HHHHHTTTCCCE----EEESCCEE--------------------C
T ss_pred cccccccccCcccccccCCcccccCcCHHHHHHh-HHHHHhccCCCE----EEECCCcc--------------------C
Confidence 12 999999998 999999 99999 99999553 3
Q ss_pred cccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHH
Q psy9001 250 TVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 329 (1351)
Q Consensus 250 ~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~ 329 (1351)
+ .+|||++++|| +++ |+||+++|||+||++|
T Consensus 218 --~-------~~~GYd~~dy~---------------------~id-------------------~~~Gt~~dfk~LV~~~ 248 (637)
T 1ji1_A 218 --P-------TNHKYDTQDYM---------------------AVD-------------------PAFGDNSTLQTLINDI 248 (637)
T ss_dssp --S-------SSSCCSCSEEE---------------------EEC-------------------TTTCCHHHHHHHHHHH
T ss_pred --C-------CCCCcCccchh---------------------hhc-------------------cccCCHHHHHHHHHHH
Confidence 2 24999999999 787 9999999999999999
Q ss_pred HHcC--C--EEEEEeeccccccCCcCCcc--cCC------CCCC---cCcccC-CCCCCCCCCC----ccCCCCCH--HH
Q psy9001 330 HKAG--L--YVLLDVVHSHASKNVLDGLN--EFD------GTQA---CFFHDG-PRGTHPLWDS----RLFNYSEI--EV 387 (1351)
Q Consensus 330 H~~G--I--~VILDvV~NH~~~~~~~~~~--~f~------g~~~---~yy~~~-~~~~~~~w~~----~~ln~~~p--~v 387 (1351)
|++| | +||||+|+||++.++.+... .|. +.++ .||+.. ..+.+..|.+ ++||++|| +|
T Consensus 249 H~~G~~I~~~VIlD~V~NH~~~~~~~f~~~~~f~~~g~y~~~~~py~~~y~~~~~~~~~~~~~g~~~~pdln~~~p~~~V 328 (637)
T 1ji1_A 249 HSTANGPKGYLILDGVFNHTGDSHPWFDKYNNFSSQGAYESQSSPWYNYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAV 328 (637)
T ss_dssp HCSSSSSCCEEEEEECCSBCCTTSTTTCTTCCSSSCCTTTCTTCTTGGGBCEEETTTEECEETTEEEEEBBBCCSTTCHH
T ss_pred HhCCCCccceEEEEECcccCCCCcHHHhhhhccCccccccCCCCccccccccCCCCCCcccccCCCCcccccccCChHHH
Confidence 9999 9 99999999999998765421 111 2222 244432 1233445543 48999999 99
Q ss_pred HHHH----HHHHHHHHHH-cCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEE
Q psy9001 388 LRFL----LSNLRWYLDE-YQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 462 (1351)
Q Consensus 388 ~~~l----~~~l~~W~~e-~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~ 462 (1351)
|++| +++++||+++ |||||||||+|.+|.... .. ....+...||+++++.+++.+|++++
T Consensus 329 r~~i~~~~~~~~~~Wl~~~~gvDGfR~Da~~~l~~~~----~~-----------~~~~~~~~fl~~~~~~v~~~~p~~~l 393 (637)
T 1ji1_A 329 RGVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVDANG----NN-----------GSDVTNHQIWSEFRNAVKGVNSNAAI 393 (637)
T ss_dssp HHHHTTSTTSHHHHHHSTTTCCCEEEETTGGGCBSTT----CC-----------CSSHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred HHHHHhhhHHHHHHHHhCcCCCCEEEEEchhhhhccC----cc-----------ccccchHHHHHHHHHHHHhhCCCeEE
Confidence 9999 9999999999 999999999999883211 00 01235678999999999999999999
Q ss_pred EEEcCCCCCCcccccccCCCCCCCcCCc----------------------------------------------------
Q psy9001 463 IAEDVSGMPASCRPVTEGGTGFDYRLEI---------------------------------------------------- 490 (1351)
Q Consensus 463 iaE~~~~~p~~~~~~~~gg~gfd~~~~~---------------------------------------------------- 490 (1351)
|||.|...+.... .|.+|+..|++
T Consensus 394 igE~~~~~~~~~~----~g~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~~ 469 (637)
T 1ji1_A 394 IGEYWGNANPWTA----QGNQWDAATNFDGFTQPVSEWITGKDYQNNSASISTTQFDSWLRGTRANYPTNVQQSMMNFLS 469 (637)
T ss_dssp EECCSSCCGGGTT----TSSSCSEEBCTTTTHHHHHHHHTSBCTTSCBCCCCHHHHHHHHHHHHTTSCHHHHTTCEEESC
T ss_pred EEEecCCchhhhc----cCCccceEEecHHHHHHHHHHhcCCccccccCCCCHHHHHHHHHHHHHhccccchhhceeccc
Confidence 9999865433220 11122211110
Q ss_pred CCCC--------------------------------------------------------CCCcHHHHHHHHHHhhhccc
Q psy9001 491 RPDM--------------------------------------------------------SDMTVGTFDAAMNTTEERFK 514 (1351)
Q Consensus 491 ~~d~--------------------------------------------------------~~~sl~~f~k~L~~Lr~~~~ 514 (1351)
.+|. ...++.+|+|+||+||+++|
T Consensus 470 nHD~~rl~~~~~g~~~~~~~a~a~ll~~pG~P~iy~GdE~G~~~~~d~~~r~~~~W~~~~~~~~l~~~~~~Li~lRk~~~ 549 (637)
T 1ji1_A 470 NHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQGGADPDNRRSFDWSQATPSNSAVALTQKLITIRNQYP 549 (637)
T ss_dssp CTTSCCHHHHTTTCHHHHHHHHHHHTTSSSEEEEETTGGGTCCCCSTTGGGCCCCTTSSSTTSHHHHHHHHHHHHHHHCH
T ss_pred CCchhhHhhhcCCcHHHHHHHHHHHHhCCCCceEEeeeccccCCCCCCcccCCCCCCcCCChHHHHHHHHHHHHHHhhCh
Confidence 0111 11356899999999999999
Q ss_pred ccccCCcceEeecCCCcEEEEEeC----ceEEEEeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceE
Q psy9001 515 WLSADPGYVSTKHEGDKVIIFERA----GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYK 590 (1351)
Q Consensus 515 ~L~~g~~~~~~~~~~~~Vlaf~R~----~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~ 590 (1351)
+|+.|........++.+|++|.|. .++||+|+++....... +..++|+|..++|+
T Consensus 550 al~~g~~~~~~~~~~~~v~a~~R~~~~~~~lvv~N~~~~~~~~~l---------------------~~~~~~~~~~~~~~ 608 (637)
T 1ji1_A 550 ALRTGSFMTLITDDTNKIYSYGRFDNVNRIAVVLNNDSVSHTVNV---------------------PVWQLSMPNGSTVT 608 (637)
T ss_dssp HHHHSEEEEEEEETTTTEEEEEEECSSCEEEEEEECSSSCEEEEE---------------------CGGGGTCCTTCEEE
T ss_pred HhhcCceEEEEeCCCeEEEEEEEEcCCCEEEEEEECCCCCEEEec---------------------CccccccCCCceEE
Confidence 999874322223444578999996 79999999986221111 11225666678999
Q ss_pred EEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEE
Q psy9001 591 VVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILT 639 (1351)
Q Consensus 591 ~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~ 639 (1351)
++|+++.. .. .+.+++|+|||++++||+
T Consensus 609 ~~l~~~~~--------------~~-------~~~~~~~~l~p~s~~vl~ 636 (637)
T 1ji1_A 609 DKITGHSY--------------TV-------QNGMVTVAVDGHYGAVLA 636 (637)
T ss_dssp ETTTCCEE--------------EC-------BTTBEEEEECTTEEEEEE
T ss_pred EeccCceE--------------Ee-------cCCeEEEEECCCEEEEEE
Confidence 99976421 10 123578999999999986
|
| >3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-50 Score=495.98 Aligned_cols=406 Identities=23% Similarity=0.370 Sum_probs=281.2
Q ss_pred cccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccccc
Q psy9001 696 KYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKL 775 (1351)
Q Consensus 696 ~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1351)
.+|+++.+++ ++|++|||.|++|.|+++.+
T Consensus 1 ~lG~~~~~~~-~~f~vwap~a~~v~l~~~~~------------------------------------------------- 30 (558)
T 3vgf_A 1 TFAYKIDGNE-VIFTLWAPYQKSVKLKVLEK------------------------------------------------- 30 (558)
T ss_dssp --CEEEETTE-EEEEEECTTCSCCEEEETTT-------------------------------------------------
T ss_pred CCCeEEeCCc-EEEEEECCCCCEEEEEEecC-------------------------------------------------
Confidence 4799998875 99999999999999999311
Q ss_pred ccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEE
Q psy9001 776 LERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATY 854 (1351)
Q Consensus 776 ~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~ 854 (1351)
..++|++ +.|+| ++++++...| ..|+|+| +| . ..++||||++
T Consensus 31 ---------~~~~m~~~~~g~w--------------~~~~~~~~~g-------~~Y~~~~---~~---~-~~~~DP~~~~ 73 (558)
T 3vgf_A 31 ---------GLYEMERDEKGYF--------------TITLNNVKVR-------DRYKYVL---DD---A-SEIPDPASRY 73 (558)
T ss_dssp ---------EEEECEECTTCEE--------------EEEESSCCTT-------CEEEEEC---TT---S-CEECCTTCSC
T ss_pred ---------ceeecccCCCCEE--------------EEEECCCCCC-------CEEEEEE---eC---C-ccccCcchhh
Confidence 2367865 48999 8888876555 6679988 34 2 4789999997
Q ss_pred EecC-CCCCeeeeeeeeCCCCCCCCccccCCCCCCCCceEEEeecCCcccCCCcccccccccccccceeccCCCcccccc
Q psy9001 855 VTEP-PVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNRE 933 (1351)
Q Consensus 855 v~~~-~~~~~~~d~~~~~p~~~~~~~w~~~~p~~p~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~ 933 (1351)
.... ...|+|+|. . |+|+.+.+...++++|||+|||.||.+ |+|+++.+ .||+|++|| |+
T Consensus 74 ~~~~~~~~s~v~d~-----~----~~w~~~~~~~~~~~~iYe~~~~~f~~~---G~~~~~~~-~l~~l~~lG-~~----- 134 (558)
T 3vgf_A 74 QPEGVHGPSQIIQE-----S----KEFNNETFLKKEDLIIYEIHVGTFTPE---GTFEGVIR-KLDYLKDLG-IT----- 134 (558)
T ss_dssp CTTCTTSCEECCCC-----C----CCCCSSCCCCGGGCCEEEECHHHHSSS---CSHHHHHH-THHHHHHHT-CC-----
T ss_pred cccCCCCcccccCC-----C----cCcccccCCCccccEEEEEeHHHhCCC---CCHHHHHH-HHHHHHHcC-Cc-----
Confidence 5321 123555554 2 789887733448999999999999964 88888776 458888877 33
Q ss_pred cccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCc
Q psy9001 934 EFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTP 1013 (1351)
Q Consensus 934 ~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp 1013 (1351)
.++|+ +..+. .+.
T Consensus 135 ----------~v~l~--------------------------------------------------Pi~~~-------~~~ 147 (558)
T 3vgf_A 135 ----------AIEIM--------------------------------------------------PIAQF-------PGK 147 (558)
T ss_dssp ----------EEEEC--------------------------------------------------CCEEC-------SSS
T ss_pred ----------EEEEC--------------------------------------------------CcccC-------CCC
Confidence 22333 01110 111
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCC
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 1092 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~d 1092 (1351)
.++|| .+|||+++|+|||++|||+||++||++||+||||+|+||++.++ .++..+ ..||... ....|+. .
T Consensus 148 ~~~GY~~~~~~~~~~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~-~~~~~~----~~~~~~~---~~~~~g~-~ 218 (558)
T 3vgf_A 148 RDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEG-NYMVKL----GPYFSQK---YKTPWGL-T 218 (558)
T ss_dssp CCCSTTCCEEEEECGGGTHHHHHHHHHHHHHHTTCEEEEEECCSCCCSSS-CCGGGT----SCCEEEE---EEETTEE-E
T ss_pred CCcCcccccccccccccCCHHHHHHHHHHHHHcCCEEEEEEeeccccCCC-Cccccc----CCccCCC---CCCCCCC-c
Confidence 35788 88999999999999999999999999999999999999999876 333332 2344321 2334532 2
Q ss_pred CCC---CCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhh
Q psy9001 1093 FNY---SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDK 1169 (1351)
Q Consensus 1093 lN~---~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~ 1169 (1351)
+|+ .+|+||++|+++++||+++|||||||||++.+|. +.++..||+++++.+++.
T Consensus 219 ~n~~~~~~~~v~~~l~~~~~~w~~~~gvDGfR~D~~~~~~----------------------~~~~~~f~~~l~~~~~~~ 276 (558)
T 3vgf_A 219 FNFDDAESDEVRKFILENVEYWIKEYNVDGFRLSAVHAII----------------------DTSPKHILEEIADVVHKY 276 (558)
T ss_dssp ECSSSTTHHHHHHHHHHHHHHHHHHHCCCEEEESCGGGCC----------------------CCSSSCHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecccccc----------------------cccHHHHHHHHHHHHhhc
Confidence 444 5899999999999999999999999999999883 223567899999999988
Q ss_pred CCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCcccc----CCCcc
Q psy9001 1170 YPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRL----DPGTV 1245 (1351)
Q Consensus 1170 ~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~----~~~~~ 1245 (1351)
. +++|||.+.+.+.++.++..+|.|||+.|+..+|+. ....+.++-.+.+.+ +.+...+ ..++.
T Consensus 277 ~--~~~iaE~~~~~~~~~~~~~~~g~g~d~~~~~~~~~~--l~~~~~~e~~~~~~d--------~~~~~~l~~~l~~~~~ 344 (558)
T 3vgf_A 277 N--RIVIAESDLNDPRVVNPKEKCGYNIDAQWVDDFHHS--IHAYLTGERQGYYTD--------FGNLDDIVKSYKDVFV 344 (558)
T ss_dssp T--CEEEEECSSCCGGGTSCGGGTCCCCSEEECHHHHHH--HHHHHHCCCSGGGGG--------CCCHHHHHHHHHHSCS
T ss_pred C--EEEEEecCCCCcceeccccCCCCceeeEEcHHHHHH--HHHHhcCCccccccc--------cccHHHHHHHHHhhhc
Confidence 6 999999999999999999999999999998877651 111111111111110 0111111 11122
Q ss_pred cccccCCcccccCc-ccc-ccCCCCccceeeecccCCCC--CcCCcccccccCCHHHHHHHHHHHHccCCccEEEee-cc
Q psy9001 1246 YETYPEPWNNRRNS-IKL-YLPTRTGIIDEVNLLNNVRE--ERNNENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KI 1320 (1351)
Q Consensus 1246 ~~~~~~~~~~r~~s-~~~-y~p~~~~~~~~vnfv~nHD~--~rn~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~ 1320 (1351)
+......+..+..+ ... ..|.+ .++|++|||+ .+..++|+......+++++|++++||+||+|||||| |+
T Consensus 345 ~~g~~~~~~~~~~g~~~~~~~~~~-----~v~Fv~NHD~~gnr~~g~r~~~~~~~~~~~la~al~lt~pG~P~Iy~G~E~ 419 (558)
T 3vgf_A 345 YDGKYSNFRRKTHGEPVGELDGCN-----FVVYIQNHDQVGNRGKGERIIKLVDRESYKIAAALYLLSPYIPMIFMGEEY 419 (558)
T ss_dssp CSSEEETTTTEEECCCCTTCCGGG-----EEECSCCHHHHHTSTTCCCGGGTSCHHHHHHHHHHHHTSSSEEEEETTGGG
T ss_pred cccccchhhhcccCCCcccCChHH-----heeeeeccchhccccccccccccCCHHHHHHHHHHHHhCCCcceeecChhh
Confidence 21111111111100 000 11222 2899999998 444567777778889999999999999999999999 44
Q ss_pred cC
Q psy9001 1321 EK 1322 (1351)
Q Consensus 1321 ~~ 1322 (1351)
..
T Consensus 420 g~ 421 (558)
T 3vgf_A 420 GE 421 (558)
T ss_dssp TC
T ss_pred cC
Confidence 43
|
| >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=485.20 Aligned_cols=290 Identities=19% Similarity=0.281 Sum_probs=234.2
Q ss_pred cCceeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcc
Q psy9001 66 HKAGLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140 (1351)
Q Consensus 66 ~~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA 140 (1351)
.++||+|+ |++|+|+++ | ..+||++.++|+|+++||++.+| .+|+|+|+ +| ..+.||||
T Consensus 40 ~~~~~~F~vwap~a~~v~l~~~---~--~~~~m~~~~~g~~~~~~~~~~~g-------~~Y~y~v~--~~--~~~~DP~a 103 (618)
T 3m07_A 40 AADVVRFRLWATGQQKVMLRLA---G--KDQEMQANGDGWFTLDVAGVTPG-------TEYNFVLS--DG--MVVPDPAS 103 (618)
T ss_dssp ETTEEEEEEECTTCSCEEEEET---T--EEEECEECSTTEEEEEEETCCTT-------CEEEEEET--TS--CEECCTTC
T ss_pred cCCcEEEEEECCCCCEEEEEEC---C--CcccCeecCCEEEEEEeCCCCCC-------CEEEEEEe--CC--eEeccccc
Confidence 67899999 999999972 3 46899998889999999988766 59999997 45 46899999
Q ss_pred eEEecCCCCccceeeeeeCCCCCCCCccCCCCCC--CCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCc
Q psy9001 141 TYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK--KPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPD 218 (1351)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~p~--~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~ 218 (1351)
+.+...+.. .+++++|. .|.|++..++ .+++++|||+|||+|++ .|+|++++++ |||||+||||+
T Consensus 104 ~~~~~~~~~----~s~v~d~~---~~~w~~~~~~~~~~~~~~iYe~~v~~f~~---~G~~~~~~~~-L~yl~~lGv~~-- 170 (618)
T 3m07_A 104 RAQKTDVNG----PSYVVDPG---SYTWRNTGWKGSRWEQAVVYEMHTGTFTP---EGTFRAAIAK-LPYLAELGVTV-- 170 (618)
T ss_dssp SCBSSSTTS----CEECCCTT---SSCCSCTTCCCCCGGGCCEEEECHHHHSS---SCSHHHHHTT-HHHHHHHTCCE--
T ss_pred eeeecCCCC----CEEEEcCc---cCCCCCccccCCChhhCeEEEEehhhcCC---CCCHHHHHHH-HHHHHHcCCCE--
Confidence 998665431 23445665 6899876543 46899999999999986 4899999998 89999999999
Q ss_pred eeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCC
Q psy9001 219 KWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFG 298 (1351)
Q Consensus 219 ~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~ 298 (1351)
||||||++ + +.. .+|||++++|| +++
T Consensus 171 --v~l~Pi~~--------------------~--~~~-----~~~GY~~~~~~---------------------~~~---- 196 (618)
T 3m07_A 171 --IEVMPVAQ--------------------F--GGE-----RGWGYDGVLLY---------------------APH---- 196 (618)
T ss_dssp --EEECCCEE--------------------C--SSS-----CCCSTTCCEEE---------------------EEC----
T ss_pred --EEeCChhc--------------------c--CCC-----CCCCcCccccc---------------------ccC----
Confidence 99999543 2 222 35999999999 777
Q ss_pred CCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCc
Q psy9001 299 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSR 378 (1351)
Q Consensus 299 ~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~ 378 (1351)
++||+++|||+||++||++||+||||+|+||++.++.+. ..+ .+.||+.+ ....|+ +
T Consensus 197 ---------------~~~G~~~~~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~-~~~---~~~~~~~~---~~~~wg-~ 253 (618)
T 3m07_A 197 ---------------SAYGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGPEGNYL-PLL---APAFFHKE---RMTPWG-N 253 (618)
T ss_dssp ---------------TTTCCHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCH-HHH---CGGGEEEE---EEETTE-E
T ss_pred ---------------cCcCCHHHHHHHHHHHHHCCCEEEEeecCccCCCCcccc-ccc---CchhhcCC---CCCCCC-C
Confidence 999999999999999999999999999999999875431 112 23455432 123454 5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCC
Q psy9001 379 LFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 458 (1351)
Q Consensus 379 ~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P 458 (1351)
++|+++|+||++|++++++|+++|||||||||++..|.. ..+..||+++++.+++..|
T Consensus 254 ~ln~~~p~V~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~----------------------~~~~~f~~~l~~~v~~~~p 311 (618)
T 3m07_A 254 GIAYDVDAVRRYIIEAPLYWLTEYHLDGLRFDAIDQIED----------------------SSARHVLVEIAQRIREDIT 311 (618)
T ss_dssp EECTTSHHHHHHHHHHHHHHHHHTTCSEEEETTGGGCCC----------------------CSSSCHHHHHHHHHHHHCC
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHhCccEEEecchhhhcc----------------------cchHHHHHHHHHHHHHhCC
Confidence 799999999999999999999999999999999998721 1235689999999999988
Q ss_pred C--eEEEEEcCCCCCCcccccccCCCC
Q psy9001 459 E--IITIAEDVSGMPASCRPVTEGGTG 483 (1351)
Q Consensus 459 ~--~~~iaE~~~~~p~~~~~~~~gg~g 483 (1351)
+ +++|||.|...+.+..+.+.|+.|
T Consensus 312 ~~~~~li~E~~~~~~~~l~~~~~g~~g 338 (618)
T 3m07_A 312 DRPIHLTTEDSRNIISLHPRDQDGNAP 338 (618)
T ss_dssp SSCCEEEECCSSCCCTTSCCCTTSCCS
T ss_pred CCCEEEEEEecCCchhhhcccccCCcc
Confidence 6 999999998877777766555443
|
| >3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=484.69 Aligned_cols=297 Identities=23% Similarity=0.337 Sum_probs=238.2
Q ss_pred cccccCceeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeecc
Q psy9001 62 VDECHKAGLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 136 (1351)
Q Consensus 62 ~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~ 136 (1351)
+....++||+|+ |++|+|++++| ..++|++.++|+|+++||++.+| .+|+|+|++. ..+.
T Consensus 3 G~~~~~~~~~f~vwap~a~~v~l~~~~~----~~~~m~~~~~g~w~~~~~~~~~g-------~~Y~~~~~~~----~~~~ 67 (558)
T 3vgf_A 3 AYKIDGNEVIFTLWAPYQKSVKLKVLEK----GLYEMERDEKGYFTITLNNVKVR-------DRYKYVLDDA----SEIP 67 (558)
T ss_dssp CEEEETTEEEEEEECTTCSCCEEEETTT----EEEECEECTTCEEEEEESSCCTT-------CEEEEECTTS----CEEC
T ss_pred CeEEeCCcEEEEEECCCCCEEEEEEecC----ceeecccCCCCEEEEEECCCCCC-------CEEEEEEeCC----cccc
Confidence 344556799999 99999999887 57999998899999999988765 5999999632 4789
Q ss_pred CCcceEEecCCCCccceeeeeeCCCCCCCCccCCCCCCCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCc
Q psy9001 137 SPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAI 216 (1351)
Q Consensus 137 DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~p~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~ 216 (1351)
||||+.....+.. .+.++++. |.|++..++.+++++|||+|||+|++ .|+|++++++ |||||+||||+
T Consensus 68 DP~~~~~~~~~~~----~s~v~d~~----~~w~~~~~~~~~~~~iYe~~~~~f~~---~G~~~~~~~~-l~~l~~lG~~~ 135 (558)
T 3vgf_A 68 DPASRYQPEGVHG----PSQIIQES----KEFNNETFLKKEDLIIYEIHVGTFTP---EGTFEGVIRK-LDYLKDLGITA 135 (558)
T ss_dssp CTTCSCCTTCTTS----CEECCCCC----CCCCSSCCCCGGGCCEEEECHHHHSS---SCSHHHHHHT-HHHHHHHTCCE
T ss_pred CcchhhcccCCCC----cccccCCC----cCcccccCCCccccEEEEEeHHHhCC---CCCHHHHHHH-HHHHHHcCCcE
Confidence 9999976443321 23444553 79987765567899999999999986 4899999998 99999999999
Q ss_pred CceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhccccccc
Q psy9001 217 PDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEK 296 (1351)
Q Consensus 217 ~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~ 296 (1351)
||||||+ ++ +. ..+|||++++|| +++
T Consensus 136 ----v~l~Pi~--------------------~~--~~-----~~~~GY~~~~~~---------------------~~~-- 161 (558)
T 3vgf_A 136 ----IEIMPIA--------------------QF--PG-----KRDWGYDGVYLY---------------------AVQ-- 161 (558)
T ss_dssp ----EEECCCE--------------------EC--SS-----SCCCSTTCCEEE---------------------EEC--
T ss_pred ----EEECCcc--------------------cC--CC-----CCCcCccccccc---------------------ccc--
Confidence 9999944 32 22 245999999999 777
Q ss_pred CCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCC
Q psy9001 297 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD 376 (1351)
Q Consensus 297 y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~ 376 (1351)
++||+++|||+||++||++||+||||+|+||++.++.+ +..+ ..||... ....|+
T Consensus 162 -----------------~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~~~-~~~~----~~~~~~~---~~~~~g 216 (558)
T 3vgf_A 162 -----------------NSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNY-MVKL----GPYFSQK---YKTPWG 216 (558)
T ss_dssp -----------------GGGTHHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCC-GGGT----SCCEEEE---EEETTE
T ss_pred -----------------cccCCHHHHHHHHHHHHHcCCEEEEEEeeccccCCCCc-cccc----CCccCCC---CCCCCC
Confidence 89999999999999999999999999999999987533 1111 2355321 123454
Q ss_pred CccCCC---CCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHH
Q psy9001 377 SRLFNY---SEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFL 453 (1351)
Q Consensus 377 ~~~ln~---~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v 453 (1351)
. .+|+ .+|+||++|++++++|+++|||||||||++..|. +.++..||+++++.+
T Consensus 217 ~-~~n~~~~~~~~v~~~l~~~~~~w~~~~gvDGfR~D~~~~~~----------------------~~~~~~f~~~l~~~~ 273 (558)
T 3vgf_A 217 L-TFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLSAVHAII----------------------DTSPKHILEEIADVV 273 (558)
T ss_dssp E-EECSSSTTHHHHHHHHHHHHHHHHHHHCCCEEEESCGGGCC----------------------CCSSSCHHHHHHHHH
T ss_pred C-cccCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecccccc----------------------cccHHHHHHHHHHHH
Confidence 2 3344 5899999999999999999999999999999882 123457999999999
Q ss_pred HhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC
Q psy9001 454 HDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE 489 (1351)
Q Consensus 454 ~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~ 489 (1351)
++.. +++|||.+...|.+..+...+|.|||+.|+
T Consensus 274 ~~~~--~~~iaE~~~~~~~~~~~~~~~g~g~d~~~~ 307 (558)
T 3vgf_A 274 HKYN--RIVIAESDLNDPRVVNPKEKCGYNIDAQWV 307 (558)
T ss_dssp HHTT--CEEEEECSSCCGGGTSCGGGTCCCCSEEEC
T ss_pred hhcC--EEEEEecCCCCcceeccccCCCCceeeEEc
Confidence 9887 999999999999998888878887776653
|
| >2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=510.27 Aligned_cols=472 Identities=17% Similarity=0.202 Sum_probs=281.5
Q ss_pred ccccceeecCCc-EEEEeecCCccEEEEEecc--hhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccc
Q psy9001 695 NKYGIHVQADNS-VRCFEWAPSAQQLYLTGYN--AVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPE 771 (1351)
Q Consensus 695 ~~~G~~~~~~~~-~~~~~WaP~A~~v~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1351)
..+|+++.++++ ++|++|||+|++|.|++|. +|
T Consensus 320 ~~lGa~~~~~g~gv~F~vwAP~A~~V~L~l~d~~~~-------------------------------------------- 355 (1014)
T 2ya1_A 320 GKLGADLKEEGKQVDLTLWSPSADKVSVVVYDKNDP-------------------------------------------- 355 (1014)
T ss_dssp SCCEEEEEGGGTEEEEEEECTTCSEEEEEEECSSCT--------------------------------------------
T ss_pred CCcccEEeCCCCEEEEEEECCCCCEEEEEEEECCCC--------------------------------------------
Confidence 369999988775 8999999999999999941 10
Q ss_pred ccccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCcc-ccccCCCCCCeEEEEEecCCceeeEEEecC
Q psy9001 772 LHKLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHK-LLERDPYLNPYQYEMKRRYGLMVNFLEQLS 849 (1351)
Q Consensus 772 ~~~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~~~~d 849 (1351)
+. ...+++|++ ..|+| +++|++... | ....+|..|+|+|.. ++ .....+|
T Consensus 356 -------~~--~~~~~~m~~~~~gvW--------------~~~v~~~~~~g-~~~~~G~~Y~y~i~~-~~---~~~~~~D 407 (1014)
T 2ya1_A 356 -------DK--VVGTVALEKGERGTW--------------KQTLDSTNKLG-ITDFTGYYYQYQIER-QG---KTVLALD 407 (1014)
T ss_dssp -------TS--EEEEEECEECGGGEE--------------EEEECTTCSSC-CSCCTTCEEEEEEEE-TT---EEEEECC
T ss_pred -------Cc--cceEEecccCCCCEE--------------EEEEcccccCC-ccccCCcEEEEEEEe-CC---eEEEecC
Confidence 00 012467865 58999 777764210 1 001135678999975 34 4677899
Q ss_pred cceEEEec-CC-----------CCCeeeeeeeeCCCCCCCCccccCCCC-CCCCceEEEeecCCcccCCCcccccccccc
Q psy9001 850 PWATYVTE-PP-----------VVGHAYEQRIWNPKPQDKHKWTSSKPK-KPENLKIYESHVGICTQEQKCASYEDFVRV 916 (1351)
Q Consensus 850 Pya~~v~~-~~-----------~~~~~~d~~~~~p~~~~~~~w~~~~p~-~p~d~iIYE~HV~~~s~~~~~gty~~f~~~ 916 (1351)
|||++++. +. .+++++|...+.|. .++|....+. .+++++|||+|||+||.++.++.
T Consensus 408 PYa~~~~~~~~~~~~~~~~~~~~~s~vvd~~~~~~~---~~~~~~~~~~~~~~~~vIYE~hv~~ft~~~~~~~------- 477 (1014)
T 2ya1_A 408 PYAKSLAAWNSDDSKIDDAHKVAKAAFVDPAKLGPQ---DLTYGKIHNFKTREDAVIYEAHVRDFTSDPAIAK------- 477 (1014)
T ss_dssp TTCSSBCCCBGGGTTSCGGGSSCCEECCCGGGSSCT---TCCCCCCTTCSSGGGCCEEEECHHHHHCCGGGTT-------
T ss_pred ccceeccccccccccccccCCcccEEEECchhcCCc---ccccccCccccCccccEEEEEecCCCCCCCCccc-------
Confidence 99999875 21 13455665444442 3455433322 34899999999999997643210
Q ss_pred ccccee-ccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcc
Q psy9001 917 VIPRIV-KQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQV 995 (1351)
Q Consensus 917 ~lp~ik-~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~ 995 (1351)
.++ ..|+|.++..++++|+++|++.++|+- .+.+ ++..+.....
T Consensus 478 ---~~~~~~Gt~~gl~~~LdyLk~LGvtaV~L~P-------v~~~------------~~~~e~~~~~------------- 522 (1014)
T 2ya1_A 478 ---DLTKPFGTFEAFIEKLDYLKDLGVTHIQLLP-------VLSY------------YFVNELKNHE------------- 522 (1014)
T ss_dssp ---TCSSCTTSHHHHHTTHHHHHHHTCSEEEESC-------CBCB------------SSCBGGGTTS-------------
T ss_pred ---cccCCCcCHHHHHHHhHHHHHcCCCeEEecC-------cccc------------cccccccccc-------------
Confidence 000 124444444444555555555555551 1111 0000000000
Q ss_pred eeeecccCCCCCCCCCCcccccc-ccccccccCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccCCccccC
Q psy9001 996 KLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGT--------PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 1066 (1351)
Q Consensus 996 ~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt--------~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l 1066 (1351)
....+.+. ....+||| +++||+++++||+ ++|||+||++||++||+||||||+||++.++
T Consensus 523 ------~~~~y~~~-~~~ynwGY~~~~y~a~~~~ygt~p~~~~~~~~efk~lV~~~H~~GI~VIlDvV~NHt~~~~---- 591 (1014)
T 2ya1_A 523 ------RLSDYASS-NSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVD---- 591 (1014)
T ss_dssp ------CCCSCCSS-SCSCCCSCSBSCSSSBCSTTCSCTTCTTHHHHHHHHHHHHHHTTTCEEEEEECTTCCSCHH----
T ss_pred ------cccccccC-cCCcccCCCcCcCccccccccCCCccccchHHHHHHHHHHHHHcCCEEEEEEecccccccc----
Confidence 00000000 01124899 9999999999998 7999999999999999999999999999875
Q ss_pred cCCCCCCCcccc-CCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcc
Q psy9001 1067 NEFDGTQACFFH-DGPRGT-HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD 1144 (1351)
Q Consensus 1067 ~~~dg~~~~yf~-~~~~g~-~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~ 1144 (1351)
.|++..+.||+ .+..+. ..+|+++++|+++|+||++|+++++||++||||||||||+|+++
T Consensus 592 -~~~~~~~~yy~~~~~~g~~~~~~~~~~l~~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~~~~~---------------- 654 (1014)
T 2ya1_A 592 -LFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDH---------------- 654 (1014)
T ss_dssp -HHHTTSTTTSBCBCTTCCBCEETTEECBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS----------------
T ss_pred -ccccCCCCeeEEeCCCCCcccCCCCCCcCcCCHHHHHHHHHHHHHHHHhcCceEEEEeCCCCC----------------
Confidence 12333445554 233332 44677788999999999999999999999999999999999755
Q ss_pred cccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhH
Q psy9001 1145 EYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYK 1224 (1351)
Q Consensus 1145 ~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~r 1224 (1351)
...+|+.++..+++++|++++|||.|........... ..++..|.... .. .+.+++.+|
T Consensus 655 ----------~~~~~~~~~~~~~~~~p~~~ligE~W~~~~g~~~~~~---~~~~~~w~~~~-------~~-~~~f~d~~r 713 (1014)
T 2ya1_A 655 ----------DAASIEEAYKAARALNPNLIMLGEGWRTYAGDENMPT---KAADQDWMKHT-------DT-VAVFSDDIR 713 (1014)
T ss_dssp ----------BHHHHHHHHHHHHHHCTTCEEEECCCSCCCCSTTCCC---CBSSGGGGGGC-------SS-SEEECHHHH
T ss_pred ----------CHHHHHHHHHHHHHhCCCeEEEEeecccccCcccccc---cccccchhhcC-------Cc-ccchhHHHH
Confidence 3457788999999999999999999864321110000 01111111100 00 234567788
Q ss_pred hhhccCCCCCC--CccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcc---cccccC-----
Q psy9001 1225 VVLDSDCSHFG--GFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNEN---NMKRYI----- 1294 (1351)
Q Consensus 1225 d~l~~d~~~~~--gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~---r~~~~~----- 1294 (1351)
+++.++....+ ++.++......... ....++...|. ...+...|||++|||+.+.... ......
T Consensus 714 ~~l~~~~~~~~~~~~~~g~~~~~~~l~----~~l~~~~~~~~--~~~p~~~vnfv~nHD~~~l~d~v~~~~~~~~~~~~~ 787 (1014)
T 2ya1_A 714 NNLKSGYPNEGQPAFITGGKRDVNTIF----KNLIAQPTNFE--ADSPGDVIQYIAAHDNLTLFDIIAQSIKKDPSKAEN 787 (1014)
T ss_dssp HHHSCCTTSTTCCCTTTTCCEEHHHHH----HHHTTCCSSSC--CSSGGGEEECSCCSSSSCHHHHHHHHHTCCTTSHHH
T ss_pred HHHhcccccccchhhhccCcccHHHHH----HHHhcCccccc--cCChhhheEeeecCCCCcccchhhhhccCCcccchh
Confidence 88854211000 11111000000000 00011111221 1122333999999998764210 000000
Q ss_pred ---CHHHHHHHHHHHHccCCccEEEee-cccCCCC-ccceeeccCCcce
Q psy9001 1295 ---QTESNMNGFGIQTLPTQSPLYLVA-KIEKPCS-TREVVKAPLPFGV 1338 (1351)
Q Consensus 1295 ---~~~~~r~A~allltspGiP~If~g-~~~~~~~-~~~~~~~p~~~~~ 1338 (1351)
..+++|+|++++||+||+|||||| |+..... +....+.||+||.
T Consensus 788 ~~~~~~~~rla~~lll~spGiP~i~~GdE~g~t~~~~d~~~r~~~~~g~ 836 (1014)
T 2ya1_A 788 YAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAYRTPVAEDK 836 (1014)
T ss_dssp HHHHHHHHHHHHHHHHTSSSEEEEETTTTTTCCCBCCCGGGSSCCCTTT
T ss_pred hHHHHHHHHHHHHHHHhCCCCcEEEechhhcccCCCCChhhhhhhhccc
Confidence 125789999999999999999999 6665543 3445555665553
|
| >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=485.11 Aligned_cols=274 Identities=24% Similarity=0.360 Sum_probs=220.4
Q ss_pred eeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEE
Q psy9001 69 GLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYV 143 (1351)
Q Consensus 69 gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~ 143 (1351)
||+|+ |++|+|++| +..++|++.++|+|+++|| ..+| .+|+|+| +| ..+.||||+.+
T Consensus 35 ~~~f~vwap~a~~v~l~~~-----~~~~~m~~~~~g~w~~~~~-~~~g-------~~Y~~~v---~g--~~~~DPya~~~ 96 (602)
T 2bhu_A 35 GTRFRLWTSTARTVAVRVN-----GTEHVMTSLGGGIYELELP-VGPG-------ARYLFVL---DG--VPTPDPYARFL 96 (602)
T ss_dssp CEEEEEECSSCSSEEEEET-----TEEEECEEEETTEEEEEES-CCTT-------CEEEEEE---TT--EEECCTTCSCC
T ss_pred eEEEEEECCCCCEEEEEEc-----CCEEeCeeCCCcEEEEEEE-CCCC-------cEEEEEE---CC--eEecCCCcccc
Confidence 89999 999999995 3579999888899999999 6554 6999999 35 57899999998
Q ss_pred ecCCCCccceeeeeeCCCCCCCCccCCCCC--CCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeE
Q psy9001 144 TEPPVVGHAYEQRIWNPKPQDKHKWTSSKP--KKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWI 221 (1351)
Q Consensus 144 ~~~~~~~~~~~~~~~~p~~~~~~~w~~~~p--~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I 221 (1351)
...... .+.+++|. .|+|++..+ +.+++++|||+|+|+|+. .|+|++++++ |||||+||||+ |
T Consensus 97 ~~~~~~----~s~v~d~~---~~~w~~~~w~~~~~~~~viYei~~~~f~~---~G~~~gi~~~-L~yl~~lGv~~----I 161 (602)
T 2bhu_A 97 PDGVHG----EAEVVDFG---TFDWTDADWHGIKLADCVFYEVHVGTFTP---EGTYRAAAEK-LPYLKELGVTA----I 161 (602)
T ss_dssp TTCTTS----CEECCCTT---SSCCCCTTCCCCCGGGCCEEEECHHHHSS---SCSHHHHHHT-HHHHHHHTCCE----E
T ss_pred CCCCCC----CEEEeccc---ccCCCccccccCCcccceEEEEeeccccc---CCCHHHHHHH-HHHHHHcCCCE----E
Confidence 643321 23345665 688987654 346899999999999984 5999999998 99999999999 9
Q ss_pred EEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCc
Q psy9001 222 ELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPE 301 (1351)
Q Consensus 222 ~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~ 301 (1351)
||||||+ + +.. .+|||++++|| +++
T Consensus 162 ~L~Pi~~--------------------~--~~~-----~~wGY~~~~y~---------------------~~~------- 186 (602)
T 2bhu_A 162 QVMPLAA--------------------F--DGQ-----RGWGYDGAAFY---------------------APY------- 186 (602)
T ss_dssp EECCCEE--------------------C--SSS-----CCCSTTCCEEE---------------------EEC-------
T ss_pred EECChhh--------------------c--cCC-----CCCCcccccCc---------------------ccC-------
Confidence 9999553 3 322 34999999999 777
Q ss_pred cccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCC
Q psy9001 302 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFN 381 (1351)
Q Consensus 302 ~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln 381 (1351)
|+||+++|||+||++||++||+||||+|+||++.++.+ +..|. +.||+.. ....| ++++|
T Consensus 187 ------------~~~Gt~~d~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~-~~~~~---~~~~~~~---~~~~w-~~~ln 246 (602)
T 2bhu_A 187 ------------APYGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNY-LSSYA---PSYFTDR---FSSAW-GMGLD 246 (602)
T ss_dssp ------------GGGCCHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCC-HHHHC---GGGEEEE---EECSS-SEEEC
T ss_pred ------------cCCCCHHHHHHHHHHHHHCCCEEEEEecccccccCCcc-ccccC---cccccCC---CCCCC-CCCcc
Confidence 89999999999999999999999999999999976432 12222 3466532 12345 46899
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeE
Q psy9001 382 YSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEII 461 (1351)
Q Consensus 382 ~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~ 461 (1351)
+++|+||++|+++++||++||||||||||++..|... ++..||+++++.+++. |+++
T Consensus 247 ~~~~~v~~~i~~~~~~W~~~~gvDGfR~D~~~~i~~~----------------------~~~~fl~~~~~~v~~~-~~~~ 303 (602)
T 2bhu_A 247 YAEPHMRRYVTGNARMWLRDYHFDGLRLDATPYMTDD----------------------SETHILTELAQEIHEL-GGTH 303 (602)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHCCSEEEETTGGGCCCC----------------------SSSCHHHHHHHHHHTT-CSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCEEEEechHhhhcc----------------------chHHHHHHHHHHHhhc-CCeE
Confidence 9999999999999999999999999999999987311 1235899999999888 9999
Q ss_pred EEEEcCCCCCCc
Q psy9001 462 TIAEDVSGMPAS 473 (1351)
Q Consensus 462 ~iaE~~~~~p~~ 473 (1351)
+|||.|...|.+
T Consensus 304 li~E~~~~~~~~ 315 (602)
T 2bhu_A 304 LLLAEDHRNLPD 315 (602)
T ss_dssp EEEEECSSCCTH
T ss_pred EEEEeCCCCccc
Confidence 999998665543
|
| >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-49 Score=493.23 Aligned_cols=405 Identities=18% Similarity=0.260 Sum_probs=272.2
Q ss_pred hccccceeecCC-cEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcccccc
Q psy9001 694 YNKYGIHVQADN-SVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPEL 772 (1351)
Q Consensus 694 y~~~G~~~~~~~-~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (1351)
...+|+++.+++ +++|++|||.|++|.|+++ +
T Consensus 22 ~~~lGa~~~~~~~~~~f~vwap~a~~v~l~~~-~---------------------------------------------- 54 (602)
T 2bhu_A 22 RTRLGATPLPGGAGTRFRLWTSTARTVAVRVN-G---------------------------------------------- 54 (602)
T ss_dssp GGCSEEEECGGGCCEEEEEECSSCSSEEEEET-T----------------------------------------------
T ss_pred CCCCceEEeCCCCeEEEEEECCCCCEEEEEEc-C----------------------------------------------
Confidence 357999998774 6999999999999999992 0
Q ss_pred cccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcc
Q psy9001 773 HKLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPW 851 (1351)
Q Consensus 773 ~~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPy 851 (1351)
..++|++ +.|+| +++++ ... |..|+|+| +| ..++|||
T Consensus 55 ------------~~~~m~~~~~g~w--------------~~~~~-~~~-------g~~Y~~~v---~g-----~~~~DPy 92 (602)
T 2bhu_A 55 ------------TEHVMTSLGGGIY--------------ELELP-VGP-------GARYLFVL---DG-----VPTPDPY 92 (602)
T ss_dssp ------------EEEECEEEETTEE--------------EEEES-CCT-------TCEEEEEE---TT-----EEECCTT
T ss_pred ------------CEEeCeeCCCcEE--------------EEEEE-CCC-------CcEEEEEE---CC-----eEecCCC
Confidence 1366865 58999 77787 434 46679988 45 3679999
Q ss_pred eEEEecCC-CCCeeeeeeeeCCCCCCCCccccCCC-CCC-CCceEEEeecCCcccCCCcccccccccccccceeccCCCc
Q psy9001 852 ATYVTEPP-VVGHAYEQRIWNPKPQDKHKWTSSKP-KKP-ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFN 928 (1351)
Q Consensus 852 a~~v~~~~-~~~~~~d~~~~~p~~~~~~~w~~~~p-~~p-~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp~ik~lG~fn 928 (1351)
|+++.... ..++|+| | +.|+|+.+.. ..| ++++|||+|||.|+. .|+|+++++ .|++||+|| ++
T Consensus 93 a~~~~~~~~~~s~v~d-----~---~~~~w~~~~w~~~~~~~~viYei~~~~f~~---~G~~~gi~~-~L~yl~~lG-v~ 159 (602)
T 2bhu_A 93 ARFLPDGVHGEAEVVD-----F---GTFDWTDADWHGIKLADCVFYEVHVGTFTP---EGTYRAAAE-KLPYLKELG-VT 159 (602)
T ss_dssp CSCCTTCTTSCEECCC-----T---TSSCCCCTTCCCCCGGGCCEEEECHHHHSS---SCSHHHHHH-THHHHHHHT-CC
T ss_pred ccccCCCCCCCEEEec-----c---cccCCCccccccCCcccceEEEEeeccccc---CCCHHHHHH-HHHHHHHcC-CC
Confidence 99975321 1344444 3 3578887763 333 899999999999984 578777775 357777777 23
Q ss_pred ccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCC
Q psy9001 929 NWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLD 1008 (1351)
Q Consensus 929 ~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~ 1008 (1351)
.++|+ +..+.
T Consensus 160 ---------------~I~L~--------------------------------------------------Pi~~~----- 169 (602)
T 2bhu_A 160 ---------------AIQVM--------------------------------------------------PLAAF----- 169 (602)
T ss_dssp ---------------EEEEC--------------------------------------------------CCEEC-----
T ss_pred ---------------EEEEC--------------------------------------------------Chhhc-----
Confidence 22322 11110
Q ss_pred CCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCC
Q psy9001 1009 RFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL 1087 (1351)
Q Consensus 1009 ~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~ 1087 (1351)
....+||| ++||++|+|+|||++|||+||++||++||+||||||+||++.++ .++..+. +.||+.. ....
T Consensus 170 --~~~~~wGY~~~~y~~~~~~~Gt~~d~~~lv~~~H~~Gi~VilD~V~NH~~~~~-~~~~~~~---~~~~~~~---~~~~ 240 (602)
T 2bhu_A 170 --DGQRGWGYDGAAFYAPYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSG-NYLSSYA---PSYFTDR---FSSA 240 (602)
T ss_dssp --SSSCCCSTTCCEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSCCCSSS-CCHHHHC---GGGEEEE---EECS
T ss_pred --cCCCCCCcccccCcccCcCCCCHHHHHHHHHHHHHCCCEEEEEecccccccCC-ccccccC---cccccCC---CCCC
Confidence 01135788 89999999999999999999999999999999999999999765 2233322 2455432 2334
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHH
Q psy9001 1088 WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLH 1167 (1351)
Q Consensus 1088 w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~ 1167 (1351)
| +.++|+++|+||++|+++++||+++|||||||||++.+|.+. ++..||+++++.++
T Consensus 241 w-~~~ln~~~~~v~~~i~~~~~~W~~~~gvDGfR~D~~~~i~~~----------------------~~~~fl~~~~~~v~ 297 (602)
T 2bhu_A 241 W-GMGLDYAEPHMRRYVTGNARMWLRDYHFDGLRLDATPYMTDD----------------------SETHILTELAQEIH 297 (602)
T ss_dssp S-SEEECTTSHHHHHHHHHHHHHHHHHHCCSEEEETTGGGCCCC----------------------SSSCHHHHHHHHHH
T ss_pred C-CCCccCCCHHHHHHHHHHHHHHHHHhCCCEEEEechHhhhcc----------------------chHHHHHHHHHHHh
Confidence 5 457999999999999999999999999999999999988421 13358899999999
Q ss_pred hhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCC-CCCCCcc--------
Q psy9001 1168 DKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDC-SHFGGFN-------- 1238 (1351)
Q Consensus 1168 ~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~-~~~~gf~-------- 1238 (1351)
+. |++++|||.|...+....+ |.||++.|+..+++. ++..+.++. ..++.+.
T Consensus 298 ~~-~~~~li~E~~~~~~~~~~~----~~g~~~~~n~~~~~~--------------l~~~~~g~~~~~~~~~~~~~~~l~~ 358 (602)
T 2bhu_A 298 EL-GGTHLLLAEDHRNLPDLVT----VNHLDGIWTDDFHHE--------------TRVTLTGEQEGYYAGYRGGAEALAY 358 (602)
T ss_dssp TT-CSCCEEEEECSSCCTHHHH----TTCCSEEECTHHHHH--------------HHHHHHCCCSGGGGGCCCSHHHHHH
T ss_pred hc-CCeEEEEEeCCCCcccccC----CCCcceEECchhhHH--------------HHHHhcCCCcccccccccCHHHHHH
Confidence 88 9999999999776666554 567877776644431 111111110 0000000
Q ss_pred ccCCCcccccccCCcc--cccCccccccCCCCccceeeecccCCCCCcC--Cccccccc--CCHHHHHHHHHHHHccCCc
Q psy9001 1239 RLDPGTVYETYPEPWN--NRRNSIKLYLPTRTGIIDEVNLLNNVREERN--NENNMKRY--IQTESNMNGFGIQTLPTQS 1312 (1351)
Q Consensus 1239 r~~~~~~~~~~~~~~~--~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn--~~~r~~~~--~~~~~~r~A~allltspGi 1312 (1351)
.+..++.+......+. .+..+. ......+...+||++|||+.+| .+.|+... .+.+++|+|++++||+||+
T Consensus 359 ~l~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~fl~nHD~~~n~~~g~r~~~~~~~~~~~~k~a~a~ll~~pG~ 435 (602)
T 2bhu_A 359 TIRRGWRYEGQFWAVKGEEHERGH---PSDALEAPNFVYCIQNHDQIGNRPLGERLHQSDGVTLHEYRGAAALLLTLPMT 435 (602)
T ss_dssp HHHHSSSCEEEEECCTTCCEEEEC---CCTTCCGGGEEEESCCHHHHHTSTTCCCGGGSTTCCHHHHHHHHHHHHHSSSE
T ss_pred HHHhccccccccchhhccccccCc---cccCCCccceeeehhcCccccccCccchhhhhhcccHHHHHHHHHHHHhCCCC
Confidence 0000111111000010 000000 0001111223899999998544 44565544 4668999999999999999
Q ss_pred cEEEee-cccCCC
Q psy9001 1313 PLYLVA-KIEKPC 1324 (1351)
Q Consensus 1313 P~If~g-~~~~~~ 1324 (1351)
|||||| |+....
T Consensus 436 P~iy~G~E~G~~~ 448 (602)
T 2bhu_A 436 PLLFQGQEWAAST 448 (602)
T ss_dssp EEEETTGGGTCSS
T ss_pred cEEecchhhcCcC
Confidence 999999 666554
|
| >4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=508.22 Aligned_cols=309 Identities=15% Similarity=0.157 Sum_probs=220.7
Q ss_pred ccccccCceeEEE-----EEEEEEEeecCCCCccc-cceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCce--
Q psy9001 61 LVDECHKAGLLCF-----MHVVCAAGDFNNWNREE-FAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHL-- 132 (1351)
Q Consensus 61 l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~~~-~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~-- 132 (1351)
|+....++||+|+ |++|+|++.+++|+... .+|.+.++|+|+++||++.+| .+|+|+|+..++..
T Consensus 129 lGa~~~~~g~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~~~~g~W~~~~~~~~~g-------~~Y~y~v~~~~~~~~~ 201 (884)
T 4aio_A 129 LGAVFSEDSVSLHLWAPTAQGVSVCFFDGPAGPALETVQLKESNGVWSVTGPREWEN-------RYYLYEVDVYHPTKAQ 201 (884)
T ss_dssp CEEEECSSEEEEEEECTTCSEEEEEEESTTTSCEEEEEECEEETTEEEEEEEGGGTT-------CEEEEEEEEEETTTTE
T ss_pred ccCEEECCEEEEEEECCCCCEEEEEEEeCCCCCeeeeeeecCCCCEEEEEECCCCCC-------CEEEEEEeCCCCCccc
Confidence 5667788999999 99999999666665433 344456789999999988765 59999998655432
Q ss_pred ---eeccCCcceEEecCCCCcccee--eeeeCCCCCCCCccCC-CCCC--CCCCceEEEEecCCccC------CCCCCCH
Q psy9001 133 ---LDRLSPWATYVTEPPVVGHAYE--QRIWNPKPQDKHKWTS-SKPK--KPDNLKIYESHVGICTQ------EQKCASY 198 (1351)
Q Consensus 133 ---~~~~DPyA~~~~~~~~~~~~~~--~~~~~p~~~~~~~w~~-~~p~--~~~~~vIYE~hvr~ft~------~~~~G~~ 198 (1351)
.+++||||++++.++..+.+++ ...|.|. .++|.. .+|+ .+++++|||+|||+||. +..+|||
T Consensus 202 ~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~vIYE~HVr~ft~~~~~~~~~~~Gtf 278 (884)
T 4aio_A 202 VLKCLAGDPYARSLSANGARTWLVDINNETLKPA---SWDELADEKPKLDSFSDITIYELHIRDFSAHDGTVDSDSRGGF 278 (884)
T ss_dssp EEEEEECCTTCSEESGGGSSEECCCTTCGGGSCT---TGGGGGGTSCCCSCGGGCCEEEECHHHHHTTCTTSCTTTTTSG
T ss_pred ccCccccCCCeeeeccCCCCeeEecCccCccCcc---cccccccccCCCCCcccCEEEEEEcCccccCCCCCCccccCcc
Confidence 3678999999998877666654 2346665 455543 3443 56899999999999973 3568999
Q ss_pred HHH-------HHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEc-cccccccc---------cccccCCCCccc
Q psy9001 199 EDF-------VRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTL-TNRRYMEK---------TVAYAESHDQAL 261 (1351)
Q Consensus 199 ~gi-------~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~-~~~~~~e~---------~~~~~~s~~~~~ 261 (1351)
.++ +++ |||||+||||+ |||||||++..-+-.+-.... .++.+... ..........++
T Consensus 279 ~g~~~~~~~~ie~-L~yLk~LGVta----veLmPv~e~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 353 (884)
T 4aio_A 279 RAFAYQASAGMEH-LRKLSDAGLTH----VHLLPSFHFAGVDDIKSNWKFVDECELATFPPGSDMQQAAVVAIQEEDPYN 353 (884)
T ss_dssp GGGSCTTSHHHHH-HHHHHHHTCCE----EEECCCEEESSSCSCGGGCCCCCHHHHTTSCTTCSHHHHHHHHHTTTSSCC
T ss_pred cccccchhhHHHH-hHHHHHcCCCE----EEeccccccCccccccccccccccccccccCCchHHHHhhhhhhhhccccc
Confidence 987 455 99999999999 999998764210000000000 00000000 000001123568
Q ss_pred cCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9001 262 VGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVV 341 (1351)
Q Consensus 262 wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV 341 (1351)
|||++++|| +|+++|+++. ...+.++|||+||++||++||+||||+|
T Consensus 354 WGYd~~~y~---------------------a~~~~ygt~~------------d~~~~~~efk~LV~~aH~~GIkVIlDvV 400 (884)
T 4aio_A 354 WGYNPVLWG---------------------VPKGSYASDP------------DGPSRIIEYRQMVQALNRIGLRVVMDVV 400 (884)
T ss_dssp CCCCEEEEE---------------------EECGGGSSCS------------STTHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cCcCccccc---------------------CCCcccccCc------------cccchHHHHHHHHHHHHhcCCceeeeec
Confidence 999999999 8887777642 1224588999999999999999999999
Q ss_pred ccccccCCcCCc-ccCCCCCCcCc-ccCCCCCCC-CCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccccc
Q psy9001 342 HSHASKNVLDGL-NEFDGTQACFF-HDGPRGTHP-LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLY 417 (1351)
Q Consensus 342 ~NH~~~~~~~~~-~~f~g~~~~yy-~~~~~~~~~-~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~ 417 (1351)
+|||+.++.++. ..+++..+.|+ ...+.+... .|+++.+|+++|+|+++++++++||+++|||||||+|++..+.+
T Consensus 401 ~NHts~~h~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~w~~~~~vDg~R~D~~~~~~~ 479 (884)
T 4aio_A 401 YNHLDSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAMNNTASEHFMVDRLIVDDLLNWAVNYKVDGFRFDLMGHIMK 479 (884)
T ss_dssp CSBCSCCSSSSTTCCHHHHSTTTSBCBCTTSCBCCTTSSSBBCTTSHHHHHHHHHHHHHHHHHSCCCEEEETTGGGSBH
T ss_pred cccccCCCcchhhccccccCcceeeccCCCCCccCcCCccccCCCCchhhhhhhhhhhhhhhhcccccCCcccchhhhh
Confidence 999999987764 33344444333 333333333 34567899999999999999999999999999999999998853
|
| >4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-47 Score=494.53 Aligned_cols=322 Identities=19% Similarity=0.233 Sum_probs=209.3
Q ss_pred cccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccccc
Q psy9001 696 KYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKL 775 (1351)
Q Consensus 696 ~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1351)
.+|++++++| |+|++|||+|++|+|++|+++. .
T Consensus 128 plGa~~~~~g-~~F~vwAp~A~~V~l~l~~~~~------------------------~---------------------- 160 (884)
T 4aio_A 128 PLGAVFSEDS-VSLHLWAPTAQGVSVCFFDGPA------------------------G---------------------- 160 (884)
T ss_dssp CCEEEECSSE-EEEEEECTTCSEEEEEEESTTT------------------------S----------------------
T ss_pred CccCEEECCE-EEEEEECCCCCEEEEEEEeCCC------------------------C----------------------
Confidence 5999998877 9999999999999999963300 0
Q ss_pred ccCCCCCCcccc-ccccccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCce--eeEEEecCcce
Q psy9001 776 LERDPYLNPYQY-EMKRRYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLM--VNFLEQLSPWA 852 (1351)
Q Consensus 776 ~~~~~~~~~~~~-~m~~~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~~dPya 852 (1351)
.+.+. .|+++.|+| ++++++...| ..|+|+|...++.. .....++||||
T Consensus 161 -------~~~~~~~~~~~~g~W--------------~~~~~~~~~g-------~~Y~y~v~~~~~~~~~~~~~~~~DPya 212 (884)
T 4aio_A 161 -------PALETVQLKESNGVW--------------SVTGPREWEN-------RYYLYEVDVYHPTKAQVLKCLAGDPYA 212 (884)
T ss_dssp -------CEEEEEECEEETTEE--------------EEEEEGGGTT-------CEEEEEEEEEETTTTEEEEEEECCTTC
T ss_pred -------CeeeeeeecCCCCEE--------------EEEECCCCCC-------CEEEEEEeCCCCCcccccCccccCCCe
Confidence 01112 234568999 8888877666 56789987654421 11256789999
Q ss_pred EEEecCCCCCeeeeeee--eCCCCCCCCccccCC-CC--CCCCceEEEeecCCcccC------CCcccccccccccccce
Q psy9001 853 TYVTEPPVVGHAYEQRI--WNPKPQDKHKWTSSK-PK--KPENLKIYESHVGICTQE------QKCASYEDFVRVVIPRI 921 (1351)
Q Consensus 853 ~~v~~~~~~~~~~d~~~--~~p~~~~~~~w~~~~-p~--~p~d~iIYE~HV~~~s~~------~~~gty~~f~~~~lp~i 921 (1351)
++++.++.+++++|... |.|. .++|..++ |+ .+++++|||+|||+||.+ ..+|||.++++...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~vIYE~HVr~ft~~~~~~~~~~~Gtf~g~~~~~~--- 286 (884)
T 4aio_A 213 RSLSANGARTWLVDINNETLKPA---SWDELADEKPKLDSFSDITIYELHIRDFSAHDGTVDSDSRGGFRAFAYQAS--- 286 (884)
T ss_dssp SEESGGGSSEECCCTTCGGGSCT---TGGGGGGTSCCCSCGGGCCEEEECHHHHHTTCTTSCTTTTTSGGGGSCTTS---
T ss_pred eeeccCCCCeeEecCccCccCcc---cccccccccCCCCCcccCEEEEEEcCccccCCCCCCccccCcccccccchh---
Confidence 99999999999987643 5554 45555443 43 348999999999999853 35799998875320
Q ss_pred eccCCCcccccccccccccCCceEEEecCCCCCCCCcccc-cCcc--ceecCCccceeeecCCCCCCCccccccCcce-e
Q psy9001 922 VKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWN-REEF--AYKKLDFGKWELVLPPNPDGSCKLTHLSQVK-L 997 (1351)
Q Consensus 922 k~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~-~~~~--~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~-l 997 (1351)
...++++||+++|++.++|| +.+.+. .++. .+...++.- +.+....+ .... +
T Consensus 287 -------~~ie~L~yLk~LGVtaveLm-------Pv~e~~~~~~~~~~~~~~d~~~----l~~~~~~~------~~~~~l 342 (884)
T 4aio_A 287 -------AGMEHLRKLSDAGLTHVHLL-------PSFHFAGVDDIKSNWKFVDECE----LATFPPGS------DMQQAA 342 (884)
T ss_dssp -------HHHHHHHHHHHHTCCEEEEC-------CCEEESSSCSCGGGCCCCCHHH----HTTSCTTC------SHHHHH
T ss_pred -------hHHHHhHHHHHcCCCEEEec-------cccccCcccccccccccccccc----ccccCCch------HHHHhh
Confidence 00122334444445555555 122221 1110 000000000 00000000 0000 0
Q ss_pred eecccCCCCCCCCCCcccccc-ccccccccCCCCC-------HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcC-
Q psy9001 998 VVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGT-------PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE- 1068 (1351)
Q Consensus 998 ~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt-------~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~- 1068 (1351)
.... .-....++|| +++||+++|+||| ++|||+||++||++||+||||||+|||+..|......
T Consensus 343 ~~~~-------~~~~~~~WGYd~~~y~a~~~~ygt~~d~~~~~~efk~LV~~aH~~GIkVIlDvV~NHts~~h~wf~~~~ 415 (884)
T 4aio_A 343 VVAI-------QEEDPYNWGYNPVLWGVPKGSYASDPDGPSRIIEYRQMVQALNRIGLRVVMDVVYNHLDSSGPCGISSV 415 (884)
T ss_dssp HHHH-------TTTSSCCCCCCEEEEEEECGGGSSCSSTTHHHHHHHHHHHHHHHTTCEEEEEECCSBCSCCSSSSTTCC
T ss_pred hhhh-------hhccccccCcCcccccCCCcccccCccccchHHHHHHHHHHHHhcCCceeeeeccccccCCCcchhhcc
Confidence 0000 0011236899 9999999999999 5669999999999999999999999999998432211
Q ss_pred CCCCCC-ccccCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCccccc
Q psy9001 1069 FDGTQA-CFFHDGPRGTH-PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSML 1129 (1351)
Q Consensus 1069 ~dg~~~-~yf~~~~~g~~-~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~ 1129 (1351)
.++..+ +|+...+.+.. ..|+++.+|+++|+|+++++++++||+++|||||||||++..+.
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~w~~~~~vDg~R~D~~~~~~ 478 (884)
T 4aio_A 416 LDKIVPGYYVRRDTNGQIENSAAMNNTASEHFMVDRLIVDDLLNWAVNYKVDGFRFDLMGHIM 478 (884)
T ss_dssp HHHHSTTTSBCBCTTSCBCCTTSSSBBCTTSHHHHHHHHHHHHHHHHHSCCCEEEETTGGGSB
T ss_pred ccccCcceeeccCCCCCccCcCCccccCCCCchhhhhhhhhhhhhhhhcccccCCcccchhhh
Confidence 112222 33334444443 34478899999999999999999999999999999999999884
|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=469.78 Aligned_cols=426 Identities=15% Similarity=0.147 Sum_probs=273.7
Q ss_pred hhccccceeecCC-cEEEEeecCCccEEEEE-ec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccc
Q psy9001 693 SYNKYGIHVQADN-SVRCFEWAPSAQQLYLT-GY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHI 769 (1351)
Q Consensus 693 ~y~~~G~~~~~~~-~~~~~~WaP~A~~v~l~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1351)
....||+.+..+. .++||+|||+|++|.|+ ++ |+|
T Consensus 10 ~~~~~~~~~~~~~~~i~~~~~~~~a~~V~l~~~d~~~~------------------------------------------ 47 (585)
T 1wzl_A 10 AKGSYAYPISETQLRVRLRAKKGDVVRCEVLYADRYAS------------------------------------------ 47 (585)
T ss_dssp SSTTTEEEEETTEEEEEEEEETTTCSEEEEEEECTTCC------------------------------------------
T ss_pred CCCCceeecCCCEEEEEEEECCCCccEEEEEECCCcCC------------------------------------------
Confidence 4567787775433 24688999999999994 53 332
Q ss_pred ccccccccCCCCCCcccccccc-c----cccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeE
Q psy9001 770 PELHKLLERDPYLNPYQYEMKR-R----YGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNF 844 (1351)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~m~~-~----~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 844 (1351)
++- ....++|++ . +|+| +++|++..+| ..|+|+|+..+| ++
T Consensus 48 ---------~~~-~~~~~~m~~~~~~~~~~~w--------------~~~i~~~~~~-------~~Y~f~i~~~~g---~~ 93 (585)
T 1wzl_A 48 ---------PEE-ELAHALAGKAGSDERFDYF--------------EALLECSTKR-------VKYVFLLTGPQG---EA 93 (585)
T ss_dssp ---------TTS-CCEEEECEEEEECSSEEEE--------------EEEEECTTSC-------EEEEEEEECTTS---CE
T ss_pred ---------CCC-ceEEEEEEEeecCCCEEEE--------------EEEEECCCCe-------EEEEEEEEeCCC---cE
Confidence 100 113467854 2 5679 8888877655 567999987666 34
Q ss_pred EEecCcceEEEecCCCCCeeeeeeeeCCCCCCCCccccCC---CCCCCCceEEEeecCCcccCCCcccccccccccc---
Q psy9001 845 LEQLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK---PKKPENLKIYESHVGICTQEQKCASYEDFVRVVI--- 918 (1351)
Q Consensus 845 ~~~~dPya~~v~~~~~~~~~~d~~~~~p~~~~~~~w~~~~---p~~p~d~iIYE~HV~~~s~~~~~gty~~f~~~~l--- 918 (1351)
.. .+|++.+...+.. .+++. | +.|..+. |.-.++++|||+|++.|+..+. +.+..-...|-
T Consensus 94 ~~-~~~~~~~~~~~~~--~~~~~----~-----~~~~~~~~~~~~W~~~~viYqi~~~~F~~~~~-~~~~~~~~~w~~~~ 160 (585)
T 1wzl_A 94 VY-FGETGFSAERSKA--GVFQY----A-----YIHRSEVFTTPEWAKEAVIYQIFPERFANGDP-SNDPPGTEQWAKDA 160 (585)
T ss_dssp EE-EETTEEESSHHHH--CCEEE----C-----CCCGGGSCCCCSGGGGCCEEEECGGGTCCCCG-GGCCTTCCCCCTTC
T ss_pred EE-EcCCcccccCCcC--cceee----e-----eeccccccCCcchhccceEEEEcchhhcCCCc-ccccccccccCccC
Confidence 33 4688776543221 23333 2 2233322 2234799999999999974321 11111111110
Q ss_pred -c--ceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcc
Q psy9001 919 -P--RIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQV 995 (1351)
Q Consensus 919 -p--~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~ 995 (1351)
| .-..-|+|.++..++++|+++|++.++|+
T Consensus 161 ~~~~~~f~~G~~~gi~~~LdyLk~LGvt~I~L~----------------------------------------------- 193 (585)
T 1wzl_A 161 RPRHDSFYGGDLKGVIDRLPYLEELGVTALYFT----------------------------------------------- 193 (585)
T ss_dssp CCCTTCCCCCCHHHHHHTHHHHHHHTCCEEEEC-----------------------------------------------
T ss_pred CCcccccCCCCHHHHHHHhHHHHHcCCCEEEEC-----------------------------------------------
Confidence 1 00124678888888888888877554444
Q ss_pred eeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc---Cc-CCC
Q psy9001 996 KLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG---LN-EFD 1070 (1351)
Q Consensus 996 ~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~---l~-~~d 1070 (1351)
|++.++.+||| ++||++|+|+|||++|||+||++||++||+||||+|+||++.++... +. ..+
T Consensus 194 ------------Pi~~~~~~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~ 261 (585)
T 1wzl_A 194 ------------PIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQ 261 (585)
T ss_dssp ------------CCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHHGGG
T ss_pred ------------CcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcCCcCCCccHHHHHHHhcCCC
Confidence 12233457899 99999999999999999999999999999999999999999987321 00 011
Q ss_pred CCCCccccCC--C-----CCCCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCC
Q psy9001 1071 GTQACFFHDG--P-----RGTHPLWD-----SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEG 1138 (1351)
Q Consensus 1071 g~~~~yf~~~--~-----~g~~~~w~-----~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~ 1138 (1351)
.....||+.. + ......|. .++||++||+||++|+++++||+ +|||||||||+|.++
T Consensus 262 s~y~~~y~~~~~~~~~~~~~~y~~~~~~~~~~pdln~~~~~vr~~l~~~~~~Wl-~~gvDGfR~D~a~~~---------- 330 (585)
T 1wzl_A 262 SRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQGIDGWRLDVANEV---------- 330 (585)
T ss_dssp CTTGGGBCBSSSSCCCSSCCSBCBSSSSCTTCBBBCTTSHHHHHHHHHHHHHHH-HTTCCEEEETTGGGS----------
T ss_pred CCccCceEecCCCCCCCCCCCeeEcccCCCCCCeeCcCCHHHHHHHHHHHHHHH-hCCCeEEEEeccccC----------
Confidence 2233444322 1 11222232 35899999999999999999999 999999999999866
Q ss_pred CCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccc
Q psy9001 1139 FSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVE 1218 (1351)
Q Consensus 1139 ~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e 1218 (1351)
+..||+++++.+++.+|++++|||.|..... +. +|.+||..++..+.
T Consensus 331 ----------------~~~f~~~~~~~v~~~~p~~~~igE~~~~~~~----~~-~~~~~d~~~n~~~~------------ 377 (585)
T 1wzl_A 331 ----------------DHAFWREFRRLVKSLNPDALIVGEIWHDASG----WL-MGDQFDSVMNYLFR------------ 377 (585)
T ss_dssp ----------------CHHHHHHHHHHHHHHCTTCEEEECCSSCCGG----GC-SSSSCSEEBCHHHH------------
T ss_pred ----------------CHHHHHHHHHHHHHHCCCEEEEEEecCchHH----Hh-cCCCcCEEECHHHH------------
Confidence 4679999999999999999999999864322 22 23455533322111
Q ss_pred cCchhHhhhccCCCCCCCccccCCCcccccccCCcccccCcccccc---CCCCccceeeecccCCCCCcCCcccccccC-
Q psy9001 1219 QAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYL---PTRTGIIDEVNLLNNVREERNNENNMKRYI- 1294 (1351)
Q Consensus 1219 ~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~---p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~- 1294 (1351)
...++.+.++..... .+..... .....|. +... +||++|||+.|. ....
T Consensus 378 --~~~~~~~~~~~~~~~-------~~~~~l~--------~~~~~y~~~~~~~~-----~~~~~nHD~~r~-----~~~~~ 430 (585)
T 1wzl_A 378 --ESVIRFFATGEIHAE-------RFDAELT--------RARMLYPEQAAQGL-----WNLLDSHDTERF-----LTSCG 430 (585)
T ss_dssp --HHHHHHHTSCCSCHH-------HHHHHHH--------HHHTTSCHHHHTTC-----EEESCCTTSCCH-----HHHTT
T ss_pred --HHHHHHhcCCCCCHH-------HHHHHHH--------HHHHhcchhhhccc-----eEecCCCCchhh-----HHhcC
Confidence 111222211100000 0000000 0001111 1122 899999999754 2222
Q ss_pred -CHHHHHHHHHHHHccCCccEEEee-cccCCCCccceeeccCCcc
Q psy9001 1295 -QTESNMNGFGIQTLPTQSPLYLVA-KIEKPCSTREVVKAPLPFG 1337 (1351)
Q Consensus 1295 -~~~~~r~A~allltspGiP~If~g-~~~~~~~~~~~~~~p~~~~ 1337 (1351)
..+++|+|++++||+||+|||||| |+...+.....+++||+|.
T Consensus 431 ~~~~~~~~a~~~~~~~pG~P~iy~G~E~g~~~~~d~~~r~~~~W~ 475 (585)
T 1wzl_A 431 GNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAGATDPDCLRPMIWE 475 (585)
T ss_dssp TCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCC
T ss_pred CcHHHHHHHHHHHHhCCCCcEEEeecccCcCCCCCcccccCCCCC
Confidence 347899999999999999999999 8888888888899999997
|
| >4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-45 Score=463.07 Aligned_cols=317 Identities=14% Similarity=0.189 Sum_probs=226.7
Q ss_pred CCCCCceEEEEecCCccCCC-------------------CCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCc
Q psy9001 174 KKPDNLKIYESHVGICTQEQ-------------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNM 234 (1351)
Q Consensus 174 ~~~~~~vIYE~hvr~ft~~~-------------------~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~ 234 (1351)
.++++++|||+|+++|...+ ..|+|+||+++ |||||+||||+ |||||||+
T Consensus 221 ~W~~~~viYqI~p~rF~~~~~~n~~~~~~~w~~~~~~~~~gGdl~Gi~~k-LdyLk~LGvt~----IwL~Pi~~------ 289 (696)
T 4aee_A 221 RWYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDLAGIMKH-IDHLEDLGVET----IYLTPIFS------ 289 (696)
T ss_dssp CTTSSCCEEEECGGGTCCCCGGGCCSSCCCCCSSCCSSCCCCCHHHHHTT-HHHHHHHTCCE----EEECCCEE------
T ss_pred chhhcCeEEEEehHHhcCCCCCCCccccccccCCcccccCCcCHHHHHHH-hHHHHHcCCCE----EEECCccc------
Confidence 35689999999999997432 47999999998 99999999999 99999553
Q ss_pred cceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCC
Q psy9001 235 GNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAG 314 (1351)
Q Consensus 235 ~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~ 314 (1351)
+ + .+|||+++||+ +++ |
T Consensus 290 --------------s--~-------~~~GYd~~Dy~---------------------~id-------------------p 306 (696)
T 4aee_A 290 --------------S--T-------SYHRYDTIDYK---------------------SID-------------------K 306 (696)
T ss_dssp --------------E--S-------SSSCCSEEEEE---------------------EEC-------------------G
T ss_pred --------------C--C-------CCCCcCccccc---------------------ccC-------------------c
Confidence 2 1 24999999999 777 9
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCC---CcCcccCC----------------------
Q psy9001 315 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQ---ACFFHDGP---------------------- 368 (1351)
Q Consensus 315 ~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~---~~yy~~~~---------------------- 368 (1351)
+|||++|||+||++||++||+||||+|+||++.++.+..... .|.. ..||+...
T Consensus 307 ~~Gt~~df~~Lv~~aH~~GikVilD~V~NHts~~~~~f~~~~~~~~~s~y~dwy~~~~~~~~~~~~~~~~~~~~~~~~s~ 386 (696)
T 4aee_A 307 YLGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNELFVKALREGENSPYWEMFSFLSPPPKEIVELMLKYIDGEECRSR 386 (696)
T ss_dssp GGCCHHHHHHHHHHHHHTTCEEEEEECSSEECTTSHHHHHHHHHCTTSTTGGGBCBCSCCCHHHHHHHHHHHSSSSCCGG
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEeccccccCccCHHHHHHHhcCCCCCCCCceEecCCCCcccccccccccCCCccccc
Confidence 999999999999999999999999999999998875432110 1111 22343221
Q ss_pred -----------CCCCCCC----CCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCcccc
Q psy9001 369 -----------RGTHPLW----DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 433 (1351)
Q Consensus 369 -----------~~~~~~w----~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~ 433 (1351)
.+.+..| +.++||++||+||++|+++++||+ ++||||||||+|.+|
T Consensus 387 ~~~~~~~~~~~~~~y~~~~~~~~~pdLN~~np~Vr~~i~~~~~~Wl-~~GvDGfRlDaa~~i------------------ 447 (696)
T 4aee_A 387 ELYKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFIDITKFWI-DKGIDGFRIDVAMGI------------------ 447 (696)
T ss_dssp GGGGSHHHHHSCCSBCBGGGCTTCEEBCTTCHHHHHHHHHHHHHHH-TTTCCEEEETTGGGS------------------
T ss_pred cccccccccCCCCceeeecCCCCchhhcCCCHHHHHHHHHHHHHHH-hCCCCEEEEechhhC------------------
Confidence 1111111 236899999999999999999999 799999999999977
Q ss_pred CCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcC----------------------------------------------
Q psy9001 434 FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV---------------------------------------------- 467 (1351)
Q Consensus 434 ~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~---------------------------------------------- 467 (1351)
+.+||+++++.+++.+|++++|||..
T Consensus 448 --------~~~f~~~~~~~v~~~~p~~~~igE~~~~~~l~~~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 519 (696)
T 4aee_A 448 --------HYSWMKQYYEYIKNTYPDFLVLGELAENPRIYMDYFDSAMNYYLRKAILELLIYKRIDLNEFISRINNVYAY 519 (696)
T ss_dssp --------CHHHHHHHHHHHHHHCTTCEEEECCCSCGGGTTTTCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHTT
T ss_pred --------CHHHHHHHHHHHHhhCCCcEEEecccchhhhcCCccceEECcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 35688888888888888999998861
Q ss_pred -----------------------------------------CCCCCcccccccCCCCC---CCcCC--cCCCCCCCcHHH
Q psy9001 468 -----------------------------------------SGMPASCRPVTEGGTGF---DYRLE--IRPDMSDMTVGT 501 (1351)
Q Consensus 468 -----------------------------------------~~~p~~~~~~~~gg~gf---d~~~~--~~~d~~~~sl~~ 501 (1351)
+|.|.|+++.|.|-.|. +.+-. |.....+.++.+
T Consensus 520 ~~~~~~~~~~nfl~nHD~~R~~s~~~~~~~~kla~a~llt~pG~P~IYyGdE~G~~~~~dp~~R~~~~W~~~~~~~~l~~ 599 (696)
T 4aee_A 520 IPHYKALSLYNMLGSHDVPRIKSMVQNNKLLKLMYVLIFALPGSPVIYYGDEIGLEGGRDPDNRRPMIWDRGNWDLELYE 599 (696)
T ss_dssp SCHHHHHHCEECSCCTTSCCHHHHHCCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCCCCCGGGSCHHHHH
T ss_pred cchhhhhheeEecCCCCCCeehhhcCCcHHHHHHHHHHHhCCCceEEEecccccccCCCCccccCCcCCCCCCCchHHHH
Confidence 23333444433331111 11111 211112346899
Q ss_pred HHHHHHHhhhcccccccCCcceEeecCCCcEEEEEeC----ceEEEEeCCCCCcccccccccccCccccccccccccccc
Q psy9001 502 FDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERA----GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISK 577 (1351)
Q Consensus 502 f~k~L~~Lr~~~~~L~~g~~~~~~~~~~~~Vlaf~R~----~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (1351)
|+|+||+||+++++|+.|. +..+. .+++|++|.|. .++||+|++..+ . .+.
T Consensus 600 ~~k~Li~lRk~~~al~~g~-~~~~~-~~~~v~af~R~~~~~~~lVv~N~s~~~-~-~v~--------------------- 654 (696)
T 4aee_A 600 HIKKLIRIYKSCRSMRHGY-FLVEN-LGSNLLFIKRWINNEEIIFLLNVSSKD-I-SVD--------------------- 654 (696)
T ss_dssp HHHHHHHHHHHCHHHHSCE-EEEEE-CSTTEEEEEEEETTEEEEEEEECSSSC-E-ECC---------------------
T ss_pred HHHHHHHHHhhCHHhcCCc-EEEEe-cCCCEEEEEEEcCCCEEEEEEECCCCC-E-EEE---------------------
Confidence 9999999999999999884 44433 56789999995 799999999762 2 111
Q ss_pred ceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEECC
Q psy9001 578 LHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTTSP 642 (1351)
Q Consensus 578 ~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~~~ 642 (1351)
+..+ .|.|+.+++.+... ....++|+|||++++||+..+
T Consensus 655 ---l~~~-~~~~~dllsg~~~~----------------------~~g~~~l~L~p~~~~il~~~~ 693 (696)
T 4aee_A 655 ---LKKL-GKYSFDIYNEKNID----------------------QHVENNVLLRGYGFLILGSKP 693 (696)
T ss_dssp ---CC-----CCEETTTCCC------------------------------CEECTTCEEEEESSC
T ss_pred ---ccCC-CCeEEEcccCceec----------------------cCCeEEEEECCCEEEEEEeCC
Confidence 3322 46888887642211 112467999999999998754
|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-45 Score=457.52 Aligned_cols=381 Identities=16% Similarity=0.141 Sum_probs=244.0
Q ss_pred eeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEEEecCCCCCeeeeeeeeCCCCCCCCccccCCC--CCC
Q psy9001 811 SIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKP--KKP 888 (1351)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~~~~~~~~~d~~~~~p~~~~~~~w~~~~p--~~p 888 (1351)
+++|++...| ..|+|+|+..++ +.....||++.....+ ..+.+++... +.|....+ .-.
T Consensus 72 ~~~v~~~~~~-------~~Y~f~i~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~W~ 132 (588)
T 1j0h_A 72 FAEVKPPYRR-------LRYGFVLYSGEE---KLVYTEKGFYFEVPTD-DTAYYFCFPF--------LHRVDLFEAPDWV 132 (588)
T ss_dssp EEEECCTTSC-------EEEEEEEEETTE---EEEEETTEEESSCCCS-CSTTSEEECC--------CCGGGSCCCCGGG
T ss_pred EEEEECCCcE-------EEEEEEEEeCCE---EEEEECCCccccCCcc-cCCCceEeee--------ecccccCCCCccc
Confidence 8888877665 456999986655 5667778876532221 1233344311 12332222 123
Q ss_pred CCceEEEeecCCcccCCCcccccccccccc---cc--eeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccC
Q psy9001 889 ENLKIYESHVGICTQEQKCASYEDFVRVVI---PR--IVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNRE 963 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~~~gty~~f~~~~l---p~--ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~ 963 (1351)
+++||||+|++.|+.......-.. ...|- |. -.-.|+|.++..++++|+++|++.++|+
T Consensus 133 ~~~viYqi~~~~F~~~~~~~~~~~-~~~w~~~~~~~~~~~~G~~~gi~~~LdyLk~LGvt~I~L~--------------- 196 (588)
T 1j0h_A 133 KDTVWYQIFPERFANGNPSISPEG-SRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLGITGIYLT--------------- 196 (588)
T ss_dssp GGCCEEEECGGGTCCSCGGGSCTT-CCCTTSSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEEC---------------
T ss_pred cccEEEEEcchhhcCCCCCcCccc-ccccCCCCCcccccCCCCHHHHHHHHHHHHHcCCCEEEEC---------------
Confidence 799999999999975421100000 00010 11 1124788888888888888887555544
Q ss_pred ccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHH
Q psy9001 964 EFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDEC 1042 (1351)
Q Consensus 964 ~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~a 1042 (1351)
|.+.++.+||| ++|||+|+|+|||++|||+||++|
T Consensus 197 --------------------------------------------Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~ 232 (588)
T 1j0h_A 197 --------------------------------------------PIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRC 232 (588)
T ss_dssp --------------------------------------------CCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHH
T ss_pred --------------------------------------------CcccCCCCCCcCccccCccCccCCCHHHHHHHHHHH
Confidence 11223457899 999999999999999999999999
Q ss_pred HHcCCEEEEEeecccccCCccccCc----CCCCCCCccccCCC-------CCCCCCC----CCCCCCCCCHHHHHHHHHH
Q psy9001 1043 HKAGLYVLLDVVHSHASKNVLDGLN----EFDGTQACFFHDGP-------RGTHPLW----DSRLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1043 H~~GI~VILDVV~NHts~~~~~~l~----~~dg~~~~yf~~~~-------~g~~~~w----~~~dlN~~np~Vr~~lid~ 1107 (1351)
|++||+||||+|+||++.++..... ..++....||+... .+....| +..+||++||+||++|+++
T Consensus 233 H~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~dwy~~~~~~~~~~~~~~y~~~~~~~~~pdLn~~np~Vr~~l~~~ 312 (588)
T 1j0h_A 233 HEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDV 312 (588)
T ss_dssp HHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSSCSBCBSTTCTTSBBBCTTSHHHHHHHHHH
T ss_pred HHCCCEEEEEECcCcCcccchhHHHHHhcCCCCCcccccccccCCCCCCCCCCeEEecCCCCccccccCCHHHHHHHHHH
Confidence 9999999999999999988732110 01122334443221 1111111 2458999999999999999
Q ss_pred HHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q psy9001 1108 LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASC 1187 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~ 1187 (1351)
++||+++|||||||||+|.++ +..||+++++.+++.+|++++|||.|....
T Consensus 313 ~~~Wl~~~giDGfR~D~a~~~--------------------------~~~f~~~~~~~v~~~~p~~~~igE~~~~~~--- 363 (588)
T 1j0h_A 313 ATYWIREFDIDGWRLDVANEI--------------------------DHEFWREFRQEVKALKPDVYILGEIWHDAM--- 363 (588)
T ss_dssp HHHHHHHHCCCEEEETTGGGS--------------------------CHHHHHHHHHHHHHHCTTCEEEECCSSCCG---
T ss_pred HHHHHHhcCCcEEEEeccccC--------------------------CHHHHHHHHHHHHHhCCCeEEEEEecCchh---
Confidence 999999999999999999866 568999999999999999999999985432
Q ss_pred cccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCC
Q psy9001 1188 RPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTR 1267 (1351)
Q Consensus 1188 ~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~ 1267 (1351)
.+. +|.+||..++..+++ ..++.+..+.. .. ..+..... .....|. ..
T Consensus 364 -~~~-~g~~~d~~~n~~~~~--------------~~~~~~~~~~~-----~~--~~~~~~l~--------~~~~~y~-~~ 411 (588)
T 1j0h_A 364 -PWL-RGDQFDAVMNYPFTD--------------GVLRFFAKEEI-----SA--RQFANQMM--------HVLHSYP-NN 411 (588)
T ss_dssp -GGC-SSSSCSEEBCHHHHH--------------HHHHHHTSCCS-----CH--HHHHHHHH--------HHHHTSC-HH
T ss_pred -hhh-cCCCcCEEEChHHHH--------------HHHHHHhcCCC-----CH--HHHHHHHH--------HHHHhcc-cc
Confidence 122 355677544432221 11111110000 00 00000000 0000111 00
Q ss_pred CccceeeecccCCCCCcCCcccccccC--CHHHHHHHHHHHHccCCccEEEee-cccCCCCccceeeccCCcc
Q psy9001 1268 TGIIDEVNLLNNVREERNNENNMKRYI--QTESNMNGFGIQTLPTQSPLYLVA-KIEKPCSTREVVKAPLPFG 1337 (1351)
Q Consensus 1268 ~~~~~~vnfv~nHD~~rn~~~r~~~~~--~~~~~r~A~allltspGiP~If~g-~~~~~~~~~~~~~~p~~~~ 1337 (1351)
. ....+||++|||+.|. .... ..+++|+|++++||+||+|||||| |+...+.....+++||+|.
T Consensus 412 ~-~~~~~~~~~nHD~~r~-----~~~~~~~~~~~~~a~~~~~~~pG~P~iy~G~E~g~~~~~dp~~r~~~~W~ 478 (588)
T 1j0h_A 412 V-NEAAFNLLGSHDTSRI-----LTVCGGDIRKVKLLFLFQLTFTGSPCIYYGDEIGMTGGNDPECRKCMVWD 478 (588)
T ss_dssp H-HHTCBCBSCCTTSCCH-----HHHTTTCHHHHHHHHHHHHHSSSCCEEETTGGGTCCCCSTTGGGCCCCCC
T ss_pred h-hhhheeecCCCCCchh-----hhhcCCcHHHHHHHHHHHHhCCCCcEEEeecccCccCCCCccccCCcCCC
Confidence 0 0011789999999753 2222 347899999999999999999999 8888888777899999997
|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-46 Score=463.11 Aligned_cols=384 Identities=15% Similarity=0.130 Sum_probs=244.5
Q ss_pred eeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEEEecCCCCCeeeeeeeeCCCCCCCCccccCCCCCCCC
Q psy9001 811 SIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPEN 890 (1351)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~~~~~~~~~d~~~~~p~~~~~~~w~~~~p~~p~d 890 (1351)
+++|++...| ..|+|+|+..++ +.....||++.. .....+.+++....+|.. .| ..|.-.++
T Consensus 69 ~~~i~~~~~~-------~~Y~f~i~~~~~---~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~----~~--~~~~W~~~ 130 (583)
T 1ea9_C 69 ECEVTPPYRR-------VKYGFLLQQGHE---KRWMTEYDFLTE--PPANPDRLFEYPFINPVD----VF--QPPAWVKD 130 (583)
T ss_dssp CCEECCTTSC-------EEECBCCEETTE---ECCBCSSSBCSS--CCSCGGGSEEECCCCTTT----SC--CCCTHHHH
T ss_pred EEEEECCCce-------EEEEEEEEeCCE---EEEEeCCCcccc--CcccCCcceeeeeecccc----cC--CCCccccc
Confidence 8888887666 456888886655 445667888775 223345556653322210 11 11112278
Q ss_pred ceEEEeecCCcccCCCcccccccccccc---cce--eccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCcc
Q psy9001 891 LKIYESHVGICTQEQKCASYEDFVRVVI---PRI--VKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEF 965 (1351)
Q Consensus 891 ~iIYE~HV~~~s~~~~~gty~~f~~~~l---p~i--k~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~ 965 (1351)
++|||+|++.|+..+. +.+......|- |.. ..-|+|.++..++++|+++|++.++|+
T Consensus 131 ~viYqi~~~~F~~~~~-~~~~~~~~~w~~~~~~~~~~~~Gd~~gi~~~LdyLk~LGvt~I~L~----------------- 192 (583)
T 1ea9_C 131 AIFYQIFPERFANGDT-RNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFT----------------- 192 (583)
T ss_dssp CCCCEECSTTSCCCCS-CSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTHHHHHHHTCSEEEEC-----------------
T ss_pred ceEEEEchHHhcCCCC-ccCccccccccCCCCcccccCCcCHHHHHHhhHHHHHcCCCEEEEC-----------------
Confidence 9999999999964321 11111111110 111 123678888888888888877544444
Q ss_pred ceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHH
Q psy9001 966 AYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 1044 (1351)
Q Consensus 966 ~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~ 1044 (1351)
|.+.++.+||| ++||++|+|+|||++|||+||++||+
T Consensus 193 ------------------------------------------Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~ 230 (583)
T 1ea9_C 193 ------------------------------------------PLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHE 230 (583)
T ss_dssp ------------------------------------------CCSSCSSSSTTSCSCTTCCCTTTCCHHHHHHHHHHHTT
T ss_pred ------------------------------------------CCccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHH
Confidence 22334557899 99999999999999999999999999
Q ss_pred cCCEEEEEeecccccCCcccc---Cc-CCCCCCCccccCCC--------CCCCCCCC----CCCCCCCCHHHHHHHHHHH
Q psy9001 1045 AGLYVLLDVVHSHASKNVLDG---LN-EFDGTQACFFHDGP--------RGTHPLWD----SRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1045 ~GI~VILDVV~NHts~~~~~~---l~-~~dg~~~~yf~~~~--------~g~~~~w~----~~dlN~~np~Vr~~lid~l 1108 (1351)
+||+||||+|+||++.++... +. ..++....||.... .+....|. ..+||++||+||++|++++
T Consensus 231 ~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~~~y~~~~~~~~~~~~~~~y~~~~~~~~~pdln~~~p~Vr~~l~~~~ 310 (583)
T 1ea9_C 231 RGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAA 310 (583)
T ss_dssp TTCEEEEECCCSBCCTTTHHHHHHHTTTTTCTTTTSSCBCSSSCCCTTSCCSBCBSSSCTTSBBCCTTSHHHHHHHHHHH
T ss_pred CCCEEEEEEccccCCCccHHHHHHHhcCCCCCccCceEecCCCCCCCCCCCCceecCCCCCcceeccCCHHHHHHHHHHH
Confidence 999999999999999987321 11 11222334443221 01222332 2389999999999999999
Q ss_pred HHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q psy9001 1109 RWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCR 1188 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~ 1188 (1351)
+||+++|||||||||+|.++ +..||+++++.+++.+|++++|||.|......
T Consensus 311 ~~W~~~~gvDGfR~D~~~~~--------------------------~~~f~~~~~~~v~~~~p~~~~igE~~~~~~~~-- 362 (583)
T 1ea9_C 311 EYWIRETGIDGWRLDVANEV--------------------------SHQFWREFRRVVKQANPDAYILGEVWHESSIW-- 362 (583)
T ss_dssp HHHHHHHCCSEEEETTCTTS--------------------------CHHHHHHHHHHHHHHCTTCEEEECCCSCCTTT--
T ss_pred HHHHHhcCceEEEecccccC--------------------------CHHHHHHHHHHHHhhCCCeEEEEEEcCChHHH--
Confidence 99999999999999999866 46799999999999999999999998543221
Q ss_pred ccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCC
Q psy9001 1189 PVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRT 1268 (1351)
Q Consensus 1189 p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~ 1268 (1351)
. +|.+|+..++..+. ...++.+.++...... +..... .....|...
T Consensus 363 --~-~~~~~d~~~n~~~~--------------~~~~~~~~~~~~~~~~-------~~~~l~--------~~~~~~~~~-- 408 (583)
T 1ea9_C 363 --L-EGDQFDAVMNYPFT--------------NAVLDFFIHQIADAEK-------FSFMLG--------KQLAGYPRQ-- 408 (583)
T ss_dssp --T-TTTSCSEEBCHHHH--------------HHHHHHTTSCCSCHHH-------HHHHHH--------HTTTTSCHH--
T ss_pred --h-cCCCcCEEECHHHH--------------HHHHHHHcCCCCCHHH-------HHHHHH--------HHHHHcchh--
Confidence 1 23455533322111 1111122111000000 000000 000111100
Q ss_pred ccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccCCccEEEee-cccCCCCccceeeccCCcc
Q psy9001 1269 GIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCSTREVVKAPLPFG 1337 (1351)
Q Consensus 1269 ~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~~~~~~~~~~p~~~~ 1337 (1351)
.....+||++|||+.|... ++. ...+++|+|++++||+||+|||||| |+...+.....+++||+|.
T Consensus 409 ~~~~~~~~~~nHD~~r~~~-~~~--~~~~~~~la~~~~~~~pG~P~iy~G~E~g~~~~~d~~~r~~~~W~ 475 (583)
T 1ea9_C 409 ASEVMFNLLDSHDTARLLT-QAD--GDKRKMKLAVLFQFTYFGTPCIYYGDEVGLDGGHDPGCRKCMEWD 475 (583)
T ss_dssp HHHTCEECSCCTTSCCHHH-HHC--SCHHHHHHHHHHHTTSSSEECCCSSCSSCCCCCSHHHHTCCCCCC
T ss_pred hhhhheeecCCCCchhhhh-hcC--CcHHHHHHHHHHHHcCCCCcEEEeccccCccCCCChhhcCCcCCC
Confidence 0011279999999976411 110 1347899999999999999999999 8888888777899999997
|
| >4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-44 Score=450.93 Aligned_cols=389 Identities=16% Similarity=0.166 Sum_probs=253.8
Q ss_pred CCCCccccccccccccCceeEEE-----EEEEEEEeecCCCCccccceeecC-C---CeEEEEcCCCCCCCcccCcccEE
Q psy9001 51 LFGTPEQLKYLVDECHKAGLLCF-----MHVVCAAGDFNNWNREEFAYKKLD-F---GKWELVLPPNPDGSCKLTHLSQV 121 (1351)
Q Consensus 51 ~f~~~~~l~~l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~-~---GvW~~~ip~~~~G~~~~~~g~~Y 121 (1351)
.+|.| ...|......+..++|+ +++|.|+++ +.+||++.. + .+|+++||+...+ ..|
T Consensus 109 ~~h~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~------~~~~m~~~~~~~~~d~w~~~v~~~~~~-------~~Y 174 (645)
T 4aef_A 109 VFHTP-SLLYLYEIFGRVHVLLRTQKGVIKGATFLGE------KHVPMRKKASDELFDYFEVIVEGGDKR-------LNY 174 (645)
T ss_dssp EECCS-STTTEEEETTEEEEEEEEETTTEEEEEEESS------SEEECEEEEECSSEEEEEEEEECSCSC-------EEE
T ss_pred eecCC-chhhhcccCCeEEEEEEcccCCcceEEEeCC------CEEEEEEEecCCCeEEEEEEEECCCCc-------eEE
Confidence 35665 44565555545556666 788888853 568999842 3 3699999987655 599
Q ss_pred EEEEEecCCceeeccCCcceEEecCCCCccceeeeeeCCCCCCCCccCCCCCCCCCCceEEEEecCCccCCC---C----
Q psy9001 122 KLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQ---K---- 194 (1351)
Q Consensus 122 ~y~i~~~~g~~~~~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~p~~~~~~vIYE~hvr~ft~~~---~---- 194 (1351)
+|+|.+.+|......++.+ .|. .+ ..|.+++++||||+|+++|...+ .
T Consensus 175 ~f~i~~~~g~~~~~~~~~~------------------~p~-----~~--~~P~W~~~aViYqI~p~~F~~~~~~~g~~~~ 229 (645)
T 4aef_A 175 SFEVLTMEGAKFEYGQFKA------------------RPF-----SI--EFPTWVIDRVFYQIMPDKFARSRKIQGIAYP 229 (645)
T ss_dssp EEEEEETTCCEEEEEEEEE------------------CCB-----CC--CCCGGGGGCCEEEECHHHHCCCSSCC-----
T ss_pred EEEEEeCCCcEEEcCCccc------------------CcC-----CC--CCChhHcCCEEEEEecchhcCCCCCCcccCC
Confidence 9999998887654322111 111 11 12446789999999999996432 1
Q ss_pred -----CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccc
Q psy9001 195 -----CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAF 269 (1351)
Q Consensus 195 -----~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y 269 (1351)
.|||+||+++ |||||+||||+ |||||||+ + + .+|||+++||
T Consensus 230 ~~~~~gGdl~Gi~~k-LdYLk~LGvt~----I~L~Pif~--------------------s--~-------~~~GYd~~dy 275 (645)
T 4aef_A 230 KDKYWGGDLIGIKEK-IDHLVNLGINA----IYLTPIFS--------------------S--L-------TYHGYDIVDY 275 (645)
T ss_dssp ----CCCCHHHHHHT-HHHHHHHTCCE----EEECCCEE--------------------E--S-------STTCSSEEEE
T ss_pred cCcCCCcCHHHHHHh-hHHHHHcCCCE----EEECCCCC--------------------C--C-------CCCCcCccCC
Confidence 3999999999 99999999999 99999553 2 1 3599999999
Q ss_pred cccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCC
Q psy9001 270 WLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV 349 (1351)
Q Consensus 270 ~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~ 349 (1351)
+ +++ |+|||++|||+||++||++||+||||+|+|||+..|
T Consensus 276 ~---------------------~id-------------------p~~Gt~~df~~LV~~aH~~GI~VIlD~V~NHts~~h 315 (645)
T 4aef_A 276 F---------------------HVA-------------------RRLGGDRAFVDLLSELKRFDIKVILDGVFHHTSFFH 315 (645)
T ss_dssp E---------------------EEC-------------------GGGTCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTS
T ss_pred C---------------------ccC-------------------cccCCHHHHHHHHHHhhhcCCEEEEEecccccccCC
Confidence 9 777 999999999999999999999999999999999887
Q ss_pred cCCcccC-CCCC---CcCcccCCC-C---------------------------CCCCC----CCccCCCCCHHHHHHHHH
Q psy9001 350 LDGLNEF-DGTQ---ACFFHDGPR-G---------------------------THPLW----DSRLFNYSEIEVLRFLLS 393 (1351)
Q Consensus 350 ~~~~~~f-~g~~---~~yy~~~~~-~---------------------------~~~~w----~~~~ln~~~p~v~~~l~~ 393 (1351)
.|..... .+.. ..||..... . .+..| ..++||+.||+||++|++
T Consensus 316 ~wf~~~~~~~~~s~~~d~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~pdLn~~np~V~~~~~~ 395 (645)
T 4aef_A 316 PYFQDVVRKGENSSFKNFYRIIKFPVVSKEFLQILHSKSSWEEKYKKIKSLGWNYESFFSVWIMPRLNHDNPKVREFIKN 395 (645)
T ss_dssp HHHHHHHHHSTTCTTGGGBCBSSSSCSCTTHHHHHHHSCGGGTTHHHHHHHCCSBCEETTEEEEEBBCTTSHHHHHHHHH
T ss_pred chhhhHhhcCCCCCcccccEeccCCCcccccccccCCCcccccccccccccccccccccccccCccccccCHHHHHHHHH
Confidence 6542110 1111 123321110 0 00011 125799999999999999
Q ss_pred HHHHHHHHcCCCccccccccccccc------------cCCCCCCCCCC---ccccCCCcc---------------CchHH
Q psy9001 394 NLRWYLDEYQFDGFRFDGVTSMLYH------------NHGCGEGFSGH---YDEYFGLNV---------------DTDAL 443 (1351)
Q Consensus 394 ~l~~W~~e~~vDGfR~D~a~~~~~~------------~~~~~~~f~~~---~~~~~~~~~---------------~~~~~ 443 (1351)
+++||++ +||||||+|+|..+... ....++.+... ..+.+.+.. ...+-
T Consensus 396 ~~~~Wl~-~gvDGfR~D~a~~i~~~f~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 474 (645)
T 4aef_A 396 VILFWTN-KGVDGFRMDVAHGVPPEVWKEVREALPKEKYLIGEVMDDARLWLFDKFHGVMNYRLYDAILRFFGYEEITAE 474 (645)
T ss_dssp HHHHHHH-TTCCEEEETTGGGSCHHHHHHHHHHSCTTCEEEECCCSCCGGGTTTTCSEEBCHHHHHHHHHHTTSCCSCHH
T ss_pred HHHHHHh-cCCCEEEeccccccchhHHHHHHhhhhccccccccccccchhhhccccceecchhHHHHHHHhhhccccchH
Confidence 9999997 69999999999987210 00001111000 000000000 11111
Q ss_pred HHHHHHHHHHHhhCC--Ce-E-E------------EEEc------------CCCCCCcccccccCCCCCC------CcCC
Q psy9001 444 IYLMVANKFLHDKYP--EI-I-T------------IAED------------VSGMPASCRPVTEGGTGFD------YRLE 489 (1351)
Q Consensus 444 ~f~~~~~~~v~~~~P--~~-~-~------------iaE~------------~~~~p~~~~~~~~gg~gfd------~~~~ 489 (1351)
.+...+........| .. . + +++. .+|.|.|+++.|.|-.|.+ .+-.
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~fl~nHD~~R~~s~~gd~~~~~~a~a~llt~pG~P~iyyGdE~G~~~~~~~~~~~~R~p 554 (645)
T 4aef_A 475 EFLNELELLSSYYGPAEYLMYNFLDNHDVERFLDIVGDKRKYVCALVFLMTYKGIPSLFYGDEIGLRGINLQGMESSRAP 554 (645)
T ss_dssp HHHHHHHHHHHHHGGGGGGCBCCSCCTTSCCHHHHHCCHHHHHHHHHHHHHSSSBCEEETTGGGTCCCEEETTEEESCCC
T ss_pred HHHHHHHHHhhhccccccccccccCCCCCcccccccCCHHHHHHHHHHHHHcCCCcEEECChhhCCCCCCCCCCccccCC
Confidence 122222111100000 00 0 0 0110 2799999999998743322 1211
Q ss_pred --cCCCCCCCcHHHHHHHHHHhhhcccccccCCcceEeecCCCcEEEEEeC----ceEEEEeCCCCCcccccc
Q psy9001 490 --IRPDMSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERA----GLLFAFNFNGTQSFTDYR 556 (1351)
Q Consensus 490 --~~~d~~~~sl~~f~k~L~~Lr~~~~~L~~g~~~~~~~~~~~~Vlaf~R~----~ll~v~Nf~~~~~~~~~~ 556 (1351)
|.....+.++++|+|+||+||+++|+|+.|. +..+.. +++|+||.|. .+|||+||+++ ..+.+.
T Consensus 555 m~W~~~~~~~~l~~~~r~Li~lRk~~paL~~G~-~~~~~~-~~~v~af~R~~~~~~~lVv~N~s~~-~~~~~~ 624 (645)
T 4aef_A 555 MLWNEEEWDQRILEITKTLVKIRKNNKALLFGN-FVPVKF-KRKFMVYKREHMGERTIVAINYSNS-RVKELG 624 (645)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHHTCHHHHHCE-EEEEEE-ETTEEEEEEEETTEEEEEEEECSSS-CEEETT
T ss_pred CCCCCccccHHHHHHHHHHHHHHhcCHHHhcCc-eEEEEc-CCCEEEEEEEeCCCEEEEEEECCCC-CcEEEE
Confidence 5444457789999999999999999999884 444433 4579999996 79999999987 444455
|
| >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-45 Score=456.57 Aligned_cols=355 Identities=16% Similarity=0.161 Sum_probs=252.2
Q ss_pred cceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEEecCCCCccceee--eeeCCCCCCCCcc
Q psy9001 91 FAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQ--RIWNPKPQDKHKW 168 (1351)
Q Consensus 91 ~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~~~~~~~~--~~~~p~~~~~~~w 168 (1351)
.+|++..+|+|+++||++.. |. |+|+|++.+|+ .++||||++++.++. ++.+. ..|. .+..|
T Consensus 8 ~~l~~~~~g~w~~~i~~~~~-------g~-Y~y~v~~~~g~--~~~DPya~~~~~~~~--~~~~~~~~~~~----~p~~w 71 (637)
T 1gjw_A 8 RYCKEKATGKRIYAVPKLWI-------PG-FFKKFDEKSGR--CFVDPYELGAEITDW--ILNQSREWDYS----QPLSF 71 (637)
T ss_dssp HHHHHHCCCCCCEEECGGGS-------CT-TCCCCEEETTE--EEECHHHHHHHHHHH--HHTTCCSSCTT----SCHHH
T ss_pred HHHhhcCCCeEEEEeCCCCC-------Cc-ceEEEECCCCC--EECCccccceecCce--eccCCCccccc----Cchhh
Confidence 46777778999999998754 58 99999988887 689999999987663 22111 1111 12355
Q ss_pred CCCCC--CCCCCceEEEEecCCccCCC----------------CCCCHHHHHHhhhHHHHHcCCCcCceeEEEeeccccc
Q psy9001 169 TSSKP--KKPDNLKIYESHVGICTQEQ----------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDE 230 (1351)
Q Consensus 169 ~~~~p--~~~~~~vIYE~hvr~ft~~~----------------~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~ 230 (1351)
...++ .++++++|||+|||.|+... ..|||+|++++ |+|||+||||+ |||||||++
T Consensus 72 ~~~~~~~~~~~~~~iYe~~~~~f~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-l~~l~~lG~~~----v~l~Pi~~~- 145 (637)
T 1gjw_A 72 LKGEKTPDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLL-LPFVKSLGADA----IYLLPVSRM- 145 (637)
T ss_dssp HHTCCSGGGGGGCCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHT-HHHHHHHTCCE----EEECCCEEE-
T ss_pred hhccCccCchhhCeEEEEeeccccCCCCCCCCccccccccchhccccHHHHHHH-HHHHHHcCCCE----EEeCCCeec-
Confidence 43433 35689999999999997321 35999999987 99999999999 999996542
Q ss_pred ccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCcccccccccc
Q psy9001 231 DWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDEC 310 (1351)
Q Consensus 231 ~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~ 310 (1351)
+........+|||++++|| +++++|+++..
T Consensus 146 ---------------------~~~~~~g~~~~gY~~~~~~---------------------~~~~~~g~~~~-------- 175 (637)
T 1gjw_A 146 ---------------------SDLFKKGDAPSPYSVKNPM---------------------ELDERYHDPLL-------- 175 (637)
T ss_dssp ---------------------CCSSCSSSSCCTTSEEEEE---------------------EECGGGSCGGG--------
T ss_pred ---------------------ccccccCCCCCccCCCCcC---------------------CcCcccCCCcc--------
Confidence 1110012357899999999 77755554210
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCc------------------------ccCCCCCC-----
Q psy9001 311 HKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL------------------------NEFDGTQA----- 361 (1351)
Q Consensus 311 ~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~------------------------~~f~g~~~----- 361 (1351)
.++++.+|||+||++||++||+||||||+||++.++.+.. ..|++..+
T Consensus 176 ---~~~~~~~~~~~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~~~p~~f~~~~~~~~~~y~~p~~~~l~~~~~~~~~~~~ 252 (637)
T 1gjw_A 176 ---EPFKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRAEELPFKVPDEDELEI 252 (637)
T ss_dssp ---TTSCHHHHHHHHHHHHHHTTCEEEEEECTTEEETTCGGGTTCGGGSCCEEGGGSTTCCCCCCTTSCSBCCCHHHHHH
T ss_pred ---cccchHHHHHHHHHHHHHCCCEEEEEECcCCCcCcchhhhhCCceeEecccccccccCCccccccccCCcccccccc
Confidence 3455589999999999999999999999999998764210 00111110
Q ss_pred cC-----------cccC------------------------------CCCC--------CCCCCC---------------
Q psy9001 362 CF-----------FHDG------------------------------PRGT--------HPLWDS--------------- 377 (1351)
Q Consensus 362 ~y-----------y~~~------------------------------~~~~--------~~~w~~--------------- 377 (1351)
.| |... .... .+.|++
T Consensus 253 ~Y~~~~~~~~~~~f~~~~~~~~p~~w~~~~~~~g~~~~~~~~~fg~~~~~~~~dw~~~~~~~w~d~~~l~~~~~~p~~~~ 332 (637)
T 1gjw_A 253 IYNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNILELIVKEFGIITPPGFSDLINDPQPTWDDVTFLRLYLDHPEASK 332 (637)
T ss_dssp HHTSHHHHHHHTTBCCCHHHHCHHHHHHHHTCSSCHHHHHHHHHSEECCCBCCSSBTCCSCCBTTEEECCCBSSCCGGGG
T ss_pred cccChhhhhhhhhcccCccccChhhcccccccccchhhhhhhccccccCcccccccccCCCCcccceeeecccCCchhhh
Confidence 00 1100 0000 123331
Q ss_pred --------------------ccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCc
Q psy9001 378 --------------------RLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN 437 (1351)
Q Consensus 378 --------------------~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~ 437 (1351)
..+|+.||+||++|+++++||++||||||||||+|..|
T Consensus 333 ~~~~~~~~dy~~f~~~~~~~~~ln~~np~V~~~l~d~~~~W~~e~gvDGfRlD~a~~l---------------------- 390 (637)
T 1gjw_A 333 RFLDPNQPPYVLYDVIKASKFPGKEPNRELWEYLAGVIPHYQKKYGIDGARLDMGHAL---------------------- 390 (637)
T ss_dssp GGSCTTCCCCCCHHHHCTTTSCCSSBCHHHHHHHTTHHHHHHHHHCCCEEEESSGGGS----------------------
T ss_pred hccccCCCcceecchhhhcccCcccCCHHHHHHHHHHHHHHhhhcCCceEEecchhhC----------------------
Confidence 12488999999999999999999999999999999977
Q ss_pred cCchHHHHHHHHHHHHHhhCCCeEEEEEcC--------------------------------------------------
Q psy9001 438 VDTDALIYLMVANKFLHDKYPEIITIAEDV-------------------------------------------------- 467 (1351)
Q Consensus 438 ~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~-------------------------------------------------- 467 (1351)
+.+||+++++++++.+|++++|||.|
T Consensus 391 ----~~~f~~~~~~~v~~~~p~~~ligE~~~~~~~~~~~~~gfd~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~fl~n 466 (637)
T 1gjw_A 391 ----PKELLDLIIKNVKEYDPAFVMIAEELDMEKDKASKEAGYDVILGSSWYFAGRVEEIGKLPDIAEELVLPFLASVET 466 (637)
T ss_dssp ----CHHHHHHHHHHHHHHCTTCEEEECCCCGGGHHHHHHHTCSEECCCHHHHHTCTTTGGGHHHHHHTCSSCEEECSCC
T ss_pred ----CHHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhHhhcCCceEeccchhccccHHHHHHHHHhhhccchHHhhcccC
Confidence 24689999999999999999999987
Q ss_pred --------------------------C-CCCCcccccccCCC-----CCC-CcCC--cC-------------------CC
Q psy9001 468 --------------------------S-GMPASCRPVTEGGT-----GFD-YRLE--IR-------------------PD 493 (1351)
Q Consensus 468 --------------------------~-~~p~~~~~~~~gg~-----gfd-~~~~--~~-------------------~d 493 (1351)
+ |.|.|+++.|.|-. |++ ...+ ++ ++
T Consensus 467 HD~~Rl~~~~~~~~~~~~a~~l~l~~~~GiP~iy~GdE~G~~~p~~~g~~~d~~~R~~~~~~Dp~~~~~~~~~~~~l~W~ 546 (637)
T 1gjw_A 467 PDTPRIATRKYASKMKKLAPFVTYFLPNSIPYVNTGQEIGEKQPMNLGLDTDPNLRKVLSPTDEFFGKLAFFDHYVLHWD 546 (637)
T ss_dssp TTSCCGGGSTTHHHHHHHHHHHHHTSTTEEEEEETTGGGTCCSCSCCCSSCCGGGGGCSCTTSTTTTCCTTTSCCCCCTT
T ss_pred CCcccccccccCcHHHHHHHHHHHHcCCCCcEEEeeeecCccCccccCCCCCccccccccccCccccccccccccccchh
Confidence 3 66677777766521 321 0000 10 01
Q ss_pred CCCCcHHHHHHHHHHhhhccccc-ccCCcceEeecCCCcEEEEEeC----ceEEEEeCCCC
Q psy9001 494 MSDMTVGTFDAAMNTTEERFKWL-SADPGYVSTKHEGDKVIIFERA----GLLFAFNFNGT 549 (1351)
Q Consensus 494 ~~~~sl~~f~k~L~~Lr~~~~~L-~~g~~~~~~~~~~~~Vlaf~R~----~ll~v~Nf~~~ 549 (1351)
..+.++.+|+|+|++||+++++| +.| .+..+ .+++|++|.|. .++||+|+++.
T Consensus 547 ~~~~~l~~~~~~Li~lRk~~paL~~~g-~~~~~--~~~~vlaf~R~~~~~~~lvv~N~~~~ 604 (637)
T 1gjw_A 547 SPDRGVLNFIKKLIKVRHEFLDFVLNG-KFENL--TTKDLVMYSYEKNGQKIVIAANVGKE 604 (637)
T ss_dssp SCCHHHHHHHHHHHHHHHHTHHHHHHS-EEEEC--CCSSEEEEEEEETTEEEEEEEECSSS
T ss_pred hcChHHHHHHHHHHHHHhhChhhhhCC-cEEEe--cCCCEEEEEEEcCCceEEEEEeCCCC
Confidence 11467899999999999999999 666 33333 24589999996 79999999976
|
| >1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-44 Score=448.38 Aligned_cols=277 Identities=15% Similarity=0.119 Sum_probs=185.9
Q ss_pred cccccc-ccccccccCCCCCHHHHHHHHHHHHHcC--C--EEEEEeecccccCCccccCcC------------CCCCCCc
Q psy9001 1013 PEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG--L--YVLLDVVHSHASKNVLDGLNE------------FDGTQAC 1075 (1351)
Q Consensus 1013 p~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~G--I--~VILDVV~NHts~~~~~~l~~------------~dg~~~~ 1075 (1351)
|.+||| ++||++|+|+|||++|||+||++||++| | +||||||+|||+.++. ++.. .+.....
T Consensus 218 ~~~~GYd~~dy~~id~~~Gt~~dfk~LV~~~H~~G~~I~~~VIlD~V~NH~~~~~~-~f~~~~~f~~~g~y~~~~~py~~ 296 (637)
T 1ji1_A 218 PTNHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHP-WFDKYNNFSSQGAYESQSSPWYN 296 (637)
T ss_dssp SSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHCSSSSSCCEEEEEECCSBCCTTST-TTCTTCCSSSCCTTTCTTCTTGG
T ss_pred CCCCCcCccchhhhccccCCHHHHHHHHHHHHhCCCCccceEEEEECcccCCCCcH-HHhhhhccCccccccCCCCcccc
Confidence 346899 9999999999999999999999999999 9 9999999999999873 2221 1112224
Q ss_pred cccCC-CCCCCCCCCC----CCCCCCCH--HHHHHH----HHHHHHHHHH-hCCCeEEEcCcccccccCCCCCCCCCCCc
Q psy9001 1076 FFHDG-PRGTHPLWDS----RLFNYSEI--EVLRFL----LSNLRWYLEE-YQFDGFRFDGVTSMLYHNHGCGEGFSGHY 1143 (1351)
Q Consensus 1076 yf~~~-~~g~~~~w~~----~dlN~~np--~Vr~~l----id~l~yWl~e-ygVDGFRfD~a~~m~~~~~g~~~~~~~~~ 1143 (1351)
||+.. ..+....|.+ .+||++|| +||++| +++++||+++ |||||||||+|.+|.+... .
T Consensus 297 ~y~~~~~~~~~~~~~g~~~~pdln~~~p~~~Vr~~i~~~~~~~~~~Wl~~~~gvDGfR~Da~~~l~~~~~----~----- 367 (637)
T 1ji1_A 297 YYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVDANGN----N----- 367 (637)
T ss_dssp GBCEEETTTEECEETTEEEEEBBBCCSTTCHHHHHHTTSTTSHHHHHHSTTTCCCEEEETTGGGCBSTTC----C-----
T ss_pred ccccCCCCCCcccccCCCCcccccccCChHHHHHHHHhhhHHHHHHHHhCcCCCCEEEEEchhhhhccCc----c-----
Confidence 55422 1233334432 38999999 999999 9999999999 9999999999999843210 0
Q ss_pred ccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchh
Q psy9001 1144 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKY 1223 (1351)
Q Consensus 1144 ~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~ 1223 (1351)
....+...||+++++.+++.+|++++|||.|...+. +...|.+||..++.. .+...+
T Consensus 368 ------~~~~~~~~fl~~~~~~v~~~~p~~~ligE~~~~~~~----~~~~g~~~d~~~n~~-------------~~~~~~ 424 (637)
T 1ji1_A 368 ------GSDVTNHQIWSEFRNAVKGVNSNAAIIGEYWGNANP----WTAQGNQWDAATNFD-------------GFTQPV 424 (637)
T ss_dssp ------CSSHHHHHHHHHHHHHHHHHCTTCEEEECCSSCCGG----GTTTSSSCSEEBCTT-------------TTHHHH
T ss_pred ------ccccchHHHHHHHHHHHHhhCCCeEEEEEecCCchh----hhccCCccceEEecH-------------HHHHHH
Confidence 013567899999999999999999999999865422 221355676554421 011223
Q ss_pred HhhhccCCCCCCCccccCCCcccccccCCcccc-cCccccccCCCCccceeeecccCCCCCcCCcccccccC--CHHHHH
Q psy9001 1224 KVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR-RNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI--QTESNM 1300 (1351)
Q Consensus 1224 rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r-~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~--~~~~~r 1300 (1351)
+..+.+.+..+. .. ......+ ..+ ......| |.. .....+||++|||+.|. .... ..+++|
T Consensus 425 ~~~~~~~~~~~~---~~-~~~~~~l-----~~~l~~~~~~~-~~~-~~~~~~~f~~nHD~~rl-----~~~~~g~~~~~~ 488 (637)
T 1ji1_A 425 SEWITGKDYQNN---SA-SISTTQF-----DSWLRGTRANY-PTN-VQQSMMNFLSNHDITRF-----ATRSGGDLWKTY 488 (637)
T ss_dssp HHHHTSBCTTSC---BC-CCCHHHH-----HHHHHHHHTTS-CHH-HHTTCEEESCCTTSCCH-----HHHTTTCHHHHH
T ss_pred HHHhcCCccccc---cC-CCCHHHH-----HHHHHHHHHhc-ccc-chhhceecccCCchhhH-----hhhcCCcHHHHH
Confidence 333322111000 00 0000000 000 0000111 100 00112899999999753 2222 357899
Q ss_pred HHHHHHHccCCccEEEee-cccCCCCccceeeccCCcce
Q psy9001 1301 NGFGIQTLPTQSPLYLVA-KIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1301 ~A~allltspGiP~If~g-~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
+|++++||+||+|||||| |+...+.....++.||+|+.
T Consensus 489 ~a~a~ll~~pG~P~iy~GdE~G~~~~~d~~~r~~~~W~~ 527 (637)
T 1ji1_A 489 LALIFQMTYVGTPTIYYGDEYGMQGGADPDNRRSFDWSQ 527 (637)
T ss_dssp HHHHHHTTSSSEEEEETTGGGTCCCCSTTGGGCCCCTTS
T ss_pred HHHHHHHhCCCCceEEeeeccccCCCCCCcccCCCCCCc
Confidence 999999999999999999 88888877777899999985
|
| >4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=425.51 Aligned_cols=207 Identities=14% Similarity=0.163 Sum_probs=150.8
Q ss_pred CCCCCCceEEEEecCCccC--CCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccc
Q psy9001 173 PKKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 250 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~ft~--~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~ 250 (1351)
+.+++++||||+|||+|+. ....|||+||+++ |||||+||||+ |||||||+ +
T Consensus 4 ~~Ww~~~viYei~~~~F~d~~~dg~Gdl~Gi~~k-LdYLk~LGvt~----I~L~Pi~~--------------------~- 57 (549)
T 4aie_A 4 ASWWKNAVVYQVYPKSFQDSNGDGIGDLQGIISR-LDYLEKLGIDA----IWLSPVYQ--------------------S- 57 (549)
T ss_dssp CCGGGSCCEEEECGGGTCCSSSSSSCCHHHHHTT-HHHHHHHTCSE----EEECCCEE--------------------C-
T ss_pred chhhccCeEEEEEcchhcCCCCCCCcCHHHHHHh-hHHHHHCCCCE----EEeCCCcC--------------------C-
Confidence 3568999999999999964 4568999999999 99999999999 99999553 2
Q ss_pred ccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHH
Q psy9001 251 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 330 (1351)
Q Consensus 251 ~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H 330 (1351)
+ ..+|||+++||| +++ |+|||++|||+||++||
T Consensus 58 -~------~~~~GYd~~dy~---------------------~vd-------------------p~~Gt~~dfk~Lv~~aH 90 (549)
T 4aie_A 58 -P------GVDNGYDISDYE---------------------AID-------------------PQYGTMADMDELISKAK 90 (549)
T ss_dssp -C------CTTTTSSCSEEE---------------------EEC-------------------TTTCCHHHHHHHHHHHH
T ss_pred -C------CCCCCcCccCCC---------------------CcC-------------------cccCCHHHHHHHHHHHH
Confidence 1 235999999999 777 99999999999999999
Q ss_pred HcCCEEEEEeeccccccCCcCCcccCCCCCC---cCcc-cCC-CCC-CC----------------------C---CCCcc
Q psy9001 331 KAGLYVLLDVVHSHASKNVLDGLNEFDGTQA---CFFH-DGP-RGT-HP----------------------L---WDSRL 379 (1351)
Q Consensus 331 ~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~---~yy~-~~~-~~~-~~----------------------~---w~~~~ 379 (1351)
++||+||||+|+|||+.++.|......+... .||. .++ ... .. . -+.++
T Consensus 91 ~~Gi~VilD~V~NHts~~~~wf~~~~~~~~~~~~~~y~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~d 170 (549)
T 4aie_A 91 EHHIKIVMDLVVNHTSDQHKWFVEAKKGKDNQYRDYYIWRDPVDEHEPNDLKSAFSGSAWKYDERSGQYYLHFFADQQPD 170 (549)
T ss_dssp HTTCEEEEEECCSBCCTTSHHHHHHTTCTTSTTGGGBCEECCBTTBCSSCCBCTTSSBSEEEETTTTEEEECSSCTTSCB
T ss_pred HCCCEEEEEECccCCcCCcchhhhhhhcccccccccccccCCcccCCCCCcccccCCCcccccccCCceEecccCCCCCc
Confidence 9999999999999999988664322222211 1111 111 000 00 0 12468
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCc-hHHHHHHHHHHHHHhhCC
Q psy9001 380 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT-DALIYLMVANKFLHDKYP 458 (1351)
Q Consensus 380 ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~f~~~~~~~v~~~~P 458 (1351)
||+.||+|+++|+++++||++ +||||||||+|..|... +.... ..+. ....+++.+++.+ ...|
T Consensus 171 ln~~np~v~~~i~~~~~~W~e-~gvDGfRlD~~~~l~~~-------~~~~~------~~~~~~~~~~~~~~~~~~-~~~~ 235 (549)
T 4aie_A 171 LNWQNTELRQKIYNMMNFWLD-KGIGGFRMDVIELIGKD-------PDKNI------RENGPMLHPYLQEMNKAT-FGKR 235 (549)
T ss_dssp BCTTCHHHHHHHHHHHHHHHH-TTCCEEEETTGGGTTCB-------GGGTB------CTTCTTHHHHHHHHHHHT-TTTT
T ss_pred cccCCHHHHHHHHHHHHHHHH-hcCCceeEecHHhcccc-------chhhh------cccccccchHHHhhhhcc-cccc
Confidence 999999999999999999976 89999999999988321 11110 0011 1223445555444 3457
Q ss_pred CeEEEEEcC
Q psy9001 459 EIITIAEDV 467 (1351)
Q Consensus 459 ~~~~iaE~~ 467 (1351)
++++|||.|
T Consensus 236 ~~~~vgE~~ 244 (549)
T 4aie_A 236 DVMTVGETW 244 (549)
T ss_dssp CCEEEEECT
T ss_pred ceeeeeccc
Confidence 778888876
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=412.47 Aligned_cols=196 Identities=18% Similarity=0.223 Sum_probs=155.0
Q ss_pred CCCCCceEEEEecCCc-cCC-------C----------------CCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccc
Q psy9001 174 KKPDNLKIYESHVGIC-TQE-------Q----------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKD 229 (1351)
Q Consensus 174 ~~~~~~vIYE~hvr~f-t~~-------~----------------~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~ 229 (1351)
.++++.+|||+++++| +.. + ..|+|+||+++ |||||+||||+ |||||||+
T Consensus 7 ~W~~~~viYqi~~~~F~~~gd~~~d~~~~~~~~~w~~~~~~~~~~~Gdl~gi~~~-LdyL~~LGv~~----I~L~Pi~~- 80 (488)
T 2wc7_A 7 DWVKHAVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMED-LDYIQNLGINA----IYFTPIFQ- 80 (488)
T ss_dssp HHHHTCCEEEECGGGTCCCSSCCCCSCTTCCGGGGGGCHHHHC-CCCCHHHHHHT-HHHHHHHTCCE----EEESCCEE-
T ss_pred CccccceEEEEccccccCCCCccCCcccccccccccCCCccCccCCcCHHHHHHh-hHHHHHcCCCE----EEECCCCC-
Confidence 3568999999999999 422 1 17999999998 99999999999 99999553
Q ss_pred cccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccc
Q psy9001 230 EDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDE 309 (1351)
Q Consensus 230 ~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~ 309 (1351)
+ + .+|||++.||+ +++
T Consensus 81 -------------------~--~-------~~~GYd~~dy~---------------------~id--------------- 96 (488)
T 2wc7_A 81 -------------------S--A-------SNHRYHTHDYY---------------------QVD--------------- 96 (488)
T ss_dssp -------------------E--C-------TTCTTSEEEEE---------------------EEC---------------
T ss_pred -------------------C--C-------CCCCCCCcCcc---------------------ccC---------------
Confidence 2 1 24999999999 777
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC----CCCCCcCcccCC----------CCCCCCC
Q psy9001 310 CHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF----DGTQACFFHDGP----------RGTHPLW 375 (1351)
Q Consensus 310 ~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f----~g~~~~yy~~~~----------~~~~~~w 375 (1351)
|+|||++|||+||++||++||+||||+|+|||+.++.+..... ......||.... ...+..|
T Consensus 97 ----p~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~s~y~~~y~~~~~~~~~~~~~~~~~~~~~ 172 (488)
T 2wc7_A 97 ----PMLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPWVNWFKIEGWPLSPYNGEFPANYVGW 172 (488)
T ss_dssp ----GGGTHHHHHHHHHHHHHHTTCEEEEEECCSBCCSSSHHHHHHHHHGGGCTTGGGBCBCSSSCCSSCTTSCCCBCBG
T ss_pred ----cccCCHHHHHHHHHHHHHCCCEEEEEeCCCcCCCcCHHHHHHHhcCCCCCCCCceeecCCCCCCCCCCCCCCcccc
Confidence 9999999999999999999999999999999999876532110 111123343211 1122333
Q ss_pred C----CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHH
Q psy9001 376 D----SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANK 451 (1351)
Q Consensus 376 ~----~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~ 451 (1351)
. .++||++||+||++|+++++||+ ++||||||||+|.++. .-.||+++++
T Consensus 173 ~~~~~~pdln~~np~vr~~i~~~~~~Wl-~~gvDGfR~D~~~~i~-------------------------~~~~~~~~~~ 226 (488)
T 2wc7_A 173 AGNRALPEFNHDNPEVREYIMEIAEYWL-KFGIDGWRLDVPFEIK-------------------------TPGFWQEFRD 226 (488)
T ss_dssp GGCTTSBBBCTTSHHHHHHHHHHHHHHH-HHTCCEEEESSGGGCC-------------------------CTTHHHHHHH
T ss_pred CCCCCcCeeccCCHHHHHHHHHHHHHHH-HCCCCEEEEecccccC-------------------------hHHHHHHHHH
Confidence 2 26899999999999999999999 7999999999998771 0038889999
Q ss_pred HHHhhCCCeEEEEEcCCC
Q psy9001 452 FLHDKYPEIITIAEDVSG 469 (1351)
Q Consensus 452 ~v~~~~P~~~~iaE~~~~ 469 (1351)
.+++.+|++++|||.|..
T Consensus 227 ~~~~~~p~~~~vgE~~~~ 244 (488)
T 2wc7_A 227 RTKAINPEAYIVGEVWGD 244 (488)
T ss_dssp HHHHHCTTCEEEECCCSC
T ss_pred HHHhhCCCeEEEEEecCC
Confidence 999999999999998754
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-41 Score=407.75 Aligned_cols=196 Identities=16% Similarity=0.238 Sum_probs=154.5
Q ss_pred CCCCceEEEEecCCc-cCCC------C----------------CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccc
Q psy9001 175 KPDNLKIYESHVGIC-TQEQ------K----------------CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDED 231 (1351)
Q Consensus 175 ~~~~~vIYE~hvr~f-t~~~------~----------------~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~ 231 (1351)
++++.+|||+++++| +..+ . .|+|+|++++ |||||+||||+ |||||||+
T Consensus 3 W~~~~viYqi~~~~F~~~gd~~~~~~g~~~~~~~~~~~~~~~~~G~~~gi~~~-LdyL~~LGv~~----I~l~Pi~~--- 74 (475)
T 2z1k_A 3 WYEGAFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTLWGVAEK-LPYLLDLGVEA----IYLNPVFA--- 74 (475)
T ss_dssp TTSSCCEEEECGGGSCCCSCCCSSCCCSCCCCTTSCCCSSCCCCCCHHHHHHT-HHHHHHHTCCE----EEECCCEE---
T ss_pred cccCceEEEEccCeecCCCCcccCCCccccccccCCCCccccCCCCHHHHHHH-hHHHHHcCCCE----EEECCCcC---
Confidence 568999999999999 5432 2 6999999998 99999999999 99999553
Q ss_pred cCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccc
Q psy9001 232 WNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECH 311 (1351)
Q Consensus 232 ~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~ 311 (1351)
+ + .+|||++.||| +++
T Consensus 75 -----------------~--~-------~~~gY~~~dy~---------------------~id----------------- 90 (475)
T 2z1k_A 75 -----------------S--T-------ANHRYHTVDYF---------------------QVD----------------- 90 (475)
T ss_dssp -----------------E--S-------STTCCSEEEEE---------------------EEC-----------------
T ss_pred -----------------C--C-------CCCCcCCCCcC---------------------ccC-----------------
Confidence 2 1 24999999999 777
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC----CCCCCcCcccC--C------CCCCCCCC---
Q psy9001 312 KAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF----DGTQACFFHDG--P------RGTHPLWD--- 376 (1351)
Q Consensus 312 id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f----~g~~~~yy~~~--~------~~~~~~w~--- 376 (1351)
|+|||++|||+||++||++||+||||+|+||++.++.+..... ......||... + .+.+..|.
T Consensus 91 --p~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~~~y~~~~~~~~~~~~~~~y~~~~~~~ 168 (475)
T 2z1k_A 91 --PILGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWYHVKGFPLKAYTAHPNYEAWWGNP 168 (475)
T ss_dssp --GGGTCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBCSSSCCTTSSSCSBCBGGGCT
T ss_pred --cccCCHHHHHHHHHHHHHCCCEEEEEEecccccCCCHHHHHHHhcCCCCCCcceeecCCCCCcCCCCCCCccccCCCC
Confidence 9999999999999999999999999999999998875432110 01112334321 1 12333332
Q ss_pred -CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHh
Q psy9001 377 -SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD 455 (1351)
Q Consensus 377 -~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~ 455 (1351)
.++||++||+||++|+++++||+ ++||||||||++.+|. ...||+++++.+++
T Consensus 169 ~~pdln~~np~v~~~i~~~~~~w~-~~gvDGfR~D~~~~~~-------------------------~~~~~~~~~~~~~~ 222 (475)
T 2z1k_A 169 ELPKLKVETPAVREYLLAVAEHWI-RFGVDGWRLDVPNEIP-------------------------DPTFWREFRQRVKG 222 (475)
T ss_dssp TSBBBCTTSHHHHHHHHHHHHHHH-HHTCCEEEESSGGGCC-------------------------CHHHHHHHHHHHHH
T ss_pred CcCccccCCHHHHHHHHHHHHHHH-HCCCCEEeecccccCC-------------------------HHHHHHHHHHHHhh
Confidence 25899999999999999999999 7999999999998771 11388888888888
Q ss_pred hCCCeEEEEEcCCCC
Q psy9001 456 KYPEIITIAEDVSGM 470 (1351)
Q Consensus 456 ~~P~~~~iaE~~~~~ 470 (1351)
.+|++++|||.|...
T Consensus 223 ~~p~~~~igE~~~~~ 237 (475)
T 2z1k_A 223 ANPEAYIVGEIWEEA 237 (475)
T ss_dssp HCTTCEEEECCSSCC
T ss_pred cCCCcEEEEEecCCc
Confidence 888888888887543
|
| >1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=394.57 Aligned_cols=198 Identities=18% Similarity=0.276 Sum_probs=155.3
Q ss_pred CCceEEEEecCCccC--CCCCCCHHHHHHhhhHHH--------HHcCCCcCceeEEEeecccccccCccceEEEcccccc
Q psy9001 177 DNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRI--------VKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRY 246 (1351)
Q Consensus 177 ~~~vIYE~hvr~ft~--~~~~G~~~gi~~~~L~yL--------k~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~ 246 (1351)
++++|||+|||+|+. .+..|+|+||+++ |||| |+||||+ |||||||+
T Consensus 3 ~~~viYqi~~~~F~~~~~~g~Gdl~gi~~~-LdyL~~~~~~~~~~LGv~~----I~L~Pi~~------------------ 59 (488)
T 1wza_A 3 KHGTYYEIFVRSFYDSDGDGIGDLKGIIEK-LDYLNDGDPETIADLGVNG----IWLMPIFK------------------ 59 (488)
T ss_dssp CCCCEEEECGGGSCCSSSSSCCCHHHHHHT-HHHHCCSCTTCCSSCCCSE----EEECCCEE------------------
T ss_pred CCcEEEEEEChhhcCCCCCCcCCHHHHHHh-hhhhhccccchhhhcCccE----EEECCccc------------------
Confidence 678999999999974 3568999999998 9999 9999999 99999553
Q ss_pred ccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHH
Q psy9001 247 MEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 326 (1351)
Q Consensus 247 ~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV 326 (1351)
. + .+|||+++||+ +++ |+|||++|||+||
T Consensus 60 --~--~-------~~~GYd~~dy~---------------------~id-------------------p~~Gt~~d~~~Lv 88 (488)
T 1wza_A 60 --S--P-------SYHGYDVTDYY---------------------KIN-------------------PDYGTLEDFHKLV 88 (488)
T ss_dssp --C--S-------SSSCCSCSEEE---------------------EEC-------------------GGGCCHHHHHHHH
T ss_pred --C--C-------CCCCcCccccc---------------------ccC-------------------cccCCHHHHHHHH
Confidence 2 1 24999999999 777 9999999999999
Q ss_pred HHHHHcCCEEEEEeeccccccCCcCCcccCCCCC---CcCcccCCC-C--------CCCCC-------------C-CccC
Q psy9001 327 DECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ---ACFFHDGPR-G--------THPLW-------------D-SRLF 380 (1351)
Q Consensus 327 ~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~---~~yy~~~~~-~--------~~~~w-------------~-~~~l 380 (1351)
++||++||+||||+|+|||+.++.+......+.. ..||...+. . ....| . .++|
T Consensus 89 ~~aH~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~f~~~~pdl 168 (488)
T 1wza_A 89 EAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGYFWSGMPDL 168 (488)
T ss_dssp HHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCCBCSSSCBCSEEEETTEEEECSSCTTSCBB
T ss_pred HHHHHCCCEEEEEeccccccCccHhhhhhhcCCCCCCcCeeecCCCCCCCCCccccCCCcccccCCceEEeccCCCCccc
Confidence 9999999999999999999998765432222222 234432221 1 01112 1 2689
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCe
Q psy9001 381 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEI 460 (1351)
Q Consensus 381 n~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~ 460 (1351)
|++||+||++|+++++||+++ ||||||||+|.+|... ....+...||+++++.+++.+| +
T Consensus 169 n~~np~Vr~~i~~~~~~Wl~~-gvDGfR~Da~~~i~~~------------------~~~~~~~~~~~~~~~~~~~~~p-~ 228 (488)
T 1wza_A 169 NYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDGAMHIFPP------------------AQYDKNFTWWEKFRQEIEEVKP-V 228 (488)
T ss_dssp CTTSHHHHHHHHHHHHHHHHT-TCCEEEEECCCTTSCG------------------GGTTHHHHHHHHHHHHHTTTSC-C
T ss_pred ccCCHHHHHHHHHHHHHHHHc-CCCChhHhhHhhhccc------------------cCcchHHHHHHHHHHHHhhcCC-C
Confidence 999999999999999999997 9999999999987321 0112456788888888888888 8
Q ss_pred EEEEEcCC
Q psy9001 461 ITIAEDVS 468 (1351)
Q Consensus 461 ~~iaE~~~ 468 (1351)
++|||.|.
T Consensus 229 ~~vgE~~~ 236 (488)
T 1wza_A 229 YLVGEVWD 236 (488)
T ss_dssp EEEEECCS
T ss_pred EEEEEeCC
Confidence 88888764
|
| >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=401.82 Aligned_cols=200 Identities=17% Similarity=0.189 Sum_probs=155.5
Q ss_pred CCCCCCceEEEEecCCccCCC---------------------CCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccc
Q psy9001 173 PKKPDNLKIYESHVGICTQEQ---------------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDED 231 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~ft~~~---------------------~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~ 231 (1351)
....++.+|||++++.|+..+ ..|+|+||+++ |||||+||||+ |||+|||+
T Consensus 101 ~~~~~~~viY~i~~drF~~gd~~nd~~~~~~~~~~~~~~~~~~gGdl~gi~~~-Ldyl~~LGv~a----I~l~Pi~~--- 172 (601)
T 3edf_A 101 QGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDH-LDYIAGLGFTQ----LWPTPLVE--- 172 (601)
T ss_dssp CCCCTTCCEEEECHHHHCCSCGGGSSCTTCSCCCCTTSTTSCCCCCHHHHHHT-HHHHHHTTCCE----EEESCCEE---
T ss_pred CCCCccCeEEEEehHHhcCCCCCcCcCcCcccccCccccccccCcCHHHHHHH-HHHHHHcCCCE----EEECcccc---
Confidence 345678899999999995221 35999999998 99999999999 99999664
Q ss_pred cCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccc
Q psy9001 232 WNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECH 311 (1351)
Q Consensus 232 ~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~ 311 (1351)
+ +.. ...+|||+++||+ +++
T Consensus 173 -----------------~--~~~---~~~~~GY~~~dy~---------------------~id----------------- 192 (601)
T 3edf_A 173 -----------------N--DAA---AYSYHGYAATDHY---------------------RID----------------- 192 (601)
T ss_dssp -----------------C--CCS---SSGGGCCSCSEEE---------------------EEC-----------------
T ss_pred -----------------C--CCC---CCCCCCcCccccc---------------------ccc-----------------
Confidence 2 111 1256999999999 777
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCC-------------CCC------
Q psy9001 312 KAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-------------GTH------ 372 (1351)
Q Consensus 312 id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~-------------~~~------ 372 (1351)
|+||+.+|||+||++||++||+||||+|+||++.++.+... .....||...+. ...
T Consensus 193 --p~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~---~p~~dw~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 267 (601)
T 3edf_A 193 --PRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKD---LPTPDWINYGGKFVPTQHHRVAVQDPYAAQADSE 267 (601)
T ss_dssp --TTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSGGGGS---CSSTTSBGGGGSCCBCCCCGGGGGCTTCCHHHHH
T ss_pred --ccCCCHHHHHHHHHHHHHcCCEEEEEECCcccCCcchhhhh---CCccCceeeCCCCCCCccccccccCCCCcccccc
Confidence 99999999999999999999999999999999998765321 111123321100 000
Q ss_pred ---CCC---CCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHH
Q psy9001 373 ---PLW---DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYL 446 (1351)
Q Consensus 373 ---~~w---~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~ 446 (1351)
..| +.++||++||+||++|+++++||++++||||||||++.++ ..+||
T Consensus 268 ~~~~~wf~~~lpdLN~~np~V~~~l~~~~~~Wi~~~GVDGfRlD~~~~~--------------------------~~~f~ 321 (601)
T 3edf_A 268 NFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYS--------------------------DGAFL 321 (601)
T ss_dssp HHHHSBSSTTSCBBCTTSHHHHHHHHHHHHHHHHHHTCSEEEESSGGGS--------------------------CHHHH
T ss_pred ccccccccccccccccCCHHHHHHHHHHHHHHHhhcCCCEEEeeccccC--------------------------CHHHH
Confidence 012 2368999999999999999999998899999999999876 24678
Q ss_pred HHHHHHHHhhCCCeEEEEEcCCCCC
Q psy9001 447 MVANKFLHDKYPEIITIAEDVSGMP 471 (1351)
Q Consensus 447 ~~~~~~v~~~~P~~~~iaE~~~~~p 471 (1351)
+++++.+++.+|++++|||.|.+.+
T Consensus 322 ~~~~~~v~~~~p~~~~vgE~~~~~~ 346 (601)
T 3edf_A 322 TEYTRRLMAEYPRLNMVGQEWSTRV 346 (601)
T ss_dssp HHHHHHHHHHCTTCEEEECCCCSCH
T ss_pred HHHHHHHHHhCCCeEEEeeecCCch
Confidence 8888888888888888888775443
|
| >1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-39 Score=397.90 Aligned_cols=215 Identities=17% Similarity=0.208 Sum_probs=158.3
Q ss_pred CCCCCceEEEEecCCccC--CCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccc
Q psy9001 174 KKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTV 251 (1351)
Q Consensus 174 ~~~~~~vIYE~hvr~ft~--~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~ 251 (1351)
.++++++|||+|+++|+. ++..|+|+||+++ |||||+||||+ |||||||+ +
T Consensus 5 ~w~~~~viYqi~~~~F~~~~~dg~Gdl~gi~~~-Ldyl~~LGv~~----I~L~Pi~~--------------------~-- 57 (557)
T 1zja_A 5 PWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEK-LDYLKGLGIDA----IWINPHYA--------------------S-- 57 (557)
T ss_dssp CHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHT-HHHHHHHTCCE----EEECCCEE--------------------C--
T ss_pred hhhhcCcEEEEEchHhcCCCCCCccCHHHHHHH-HHHHHHcCCCE----EEECCCcc--------------------C--
Confidence 457899999999999974 4568999999999 99999999999 99999553 2
Q ss_pred cccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHH
Q psy9001 252 AYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 331 (1351)
Q Consensus 252 ~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~ 331 (1351)
+ ..+|||+++||+ +++ |+|||++||++||++||+
T Consensus 58 ~------~~~~GYd~~dy~---------------------~id-------------------p~~Gt~~df~~Lv~~aH~ 91 (557)
T 1zja_A 58 P------NTDNGYDISDYR---------------------EVM-------------------KEYGTMEDFDRLMAELKK 91 (557)
T ss_dssp C------CTTTTSSCSEEE---------------------EEC-------------------TTTCCHHHHHHHHHHHHH
T ss_pred C------CCCCCCCccccc---------------------ccC-------------------cccCCHHHHHHHHHHHHH
Confidence 2 134999999999 777 999999999999999999
Q ss_pred cCCEEEEEeeccccccCCcCCcccCCCCCC---cCccc-CC-CCCC-CC---------C----------------CCccC
Q psy9001 332 AGLYVLLDVVHSHASKNVLDGLNEFDGTQA---CFFHD-GP-RGTH-PL---------W----------------DSRLF 380 (1351)
Q Consensus 332 ~GI~VILDvV~NH~~~~~~~~~~~f~g~~~---~yy~~-~~-~~~~-~~---------w----------------~~~~l 380 (1351)
+||+||||+|+|||+.++.|+.....+..+ .||.. ++ .+.. .+ | +.++|
T Consensus 92 ~Gi~VilD~V~NHts~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~~~~w~~~~~~~~~y~~~f~~~~pdL 171 (557)
T 1zja_A 92 RGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDL 171 (557)
T ss_dssp TTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCBTTBCSSCCBCTTSSBSEEEETTTTEEEECSSCTTSCBB
T ss_pred CCCEEEEEEeccccccchhHHHHhhcCCCCCCccceEecCCcCCCCCccccccCCCccccccCCcCcEEEecccccCCcc
Confidence 999999999999999987664322212221 23321 11 1111 11 1 13689
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccc--cCCC--ccC-chHHHHHHHHHHHHHh
Q psy9001 381 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE--YFGL--NVD-TDALIYLMVANKFLHD 455 (1351)
Q Consensus 381 n~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~--~~~~--~~~-~~~~~f~~~~~~~v~~ 455 (1351)
|++||+||++|+++++||++ +||||||||+|.+|... .+|...... ..+. ..+ .+..+||+++++.+++
T Consensus 172 N~~np~Vr~~l~~~~~~Wl~-~gvDGfRlDa~~~i~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ 245 (557)
T 1zja_A 172 NWDTPKLREELYAMLRFWLD-KGVSGMRFDTVATYSKT-----PGFPDLTPEQMKNFAEAYTQGPNLHRYLQEMHEKVFD 245 (557)
T ss_dssp CTTCHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSSCC-----TTCCCCCHHHHHTHHHHTTCCTTHHHHHHHHHHHTGG
T ss_pred CCCCHHHHHHHHHHHHHHHH-cCCCEEeecchhhcccc-----cccCcCCCcccccccccccCChHHHHHHHHHHHHHhc
Confidence 99999999999999999997 99999999999998432 112110000 0000 011 2345788888887776
Q ss_pred hCCCeEEEEEcCC
Q psy9001 456 KYPEIITIAEDVS 468 (1351)
Q Consensus 456 ~~P~~~~iaE~~~ 468 (1351)
. +++++|||.|.
T Consensus 246 ~-~~~~~igE~~~ 257 (557)
T 1zja_A 246 H-YDAVTAGEIFG 257 (557)
T ss_dssp G-SCCEEEEECCS
T ss_pred c-CCeEEEEeccC
Confidence 5 48888888874
|
| >1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=400.70 Aligned_cols=217 Identities=17% Similarity=0.220 Sum_probs=158.7
Q ss_pred CCCCCCceEEEEecCCccC--CCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccc
Q psy9001 173 PKKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 250 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~ft~--~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~ 250 (1351)
|.++++++|||+|+++|+. .++.|+|+||+++ |||||+||||+ |||||||+ +
T Consensus 17 ~~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~-LdyL~~LGv~~----I~l~Pi~~--------------------~- 70 (570)
T 1m53_A 17 PAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEK-LDYLKSLGIDA----IWINPHYD--------------------S- 70 (570)
T ss_dssp CCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHT-HHHHHHHTCCE----EEECCCEE--------------------C-
T ss_pred chhHhhCcEEEEechhhccCCCCCccCHHHHHHH-HHHHHHcCCCE----EEECCccc--------------------C-
Confidence 3467899999999999964 4568999999998 99999999999 99999553 2
Q ss_pred ccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHH
Q psy9001 251 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 330 (1351)
Q Consensus 251 ~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H 330 (1351)
+ ..+|||+++||+ +++ |+|||++|||+||++||
T Consensus 71 -~------~~~~GYd~~dy~---------------------~id-------------------p~~Gt~~df~~lv~~aH 103 (570)
T 1m53_A 71 -P------NTDNGYDISNYR---------------------QIM-------------------KEYGTMEDFDSLVAEMK 103 (570)
T ss_dssp -C------CTTTTSSCSEEE---------------------EEC-------------------GGGCCHHHHHHHHHHHH
T ss_pred -C------CCCCCCCccccc---------------------ccC-------------------cccCCHHHHHHHHHHHH
Confidence 2 124999999999 777 99999999999999999
Q ss_pred HcCCEEEEEeeccccccCCcCCcccC-CCCCC--cCccc-CC-CCCC-CC---------C----------------CCcc
Q psy9001 331 KAGLYVLLDVVHSHASKNVLDGLNEF-DGTQA--CFFHD-GP-RGTH-PL---------W----------------DSRL 379 (1351)
Q Consensus 331 ~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~--~yy~~-~~-~~~~-~~---------w----------------~~~~ 379 (1351)
++||+||||+|+|||+.++.|+.... .+..+ .||.. ++ ++.. .+ | +.++
T Consensus 104 ~~Gi~VilD~V~NH~s~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~~~~w~~~~~~~~~y~~~f~~~~pd 183 (570)
T 1m53_A 104 KRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQYYLHYFARQQPD 183 (570)
T ss_dssp HTTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSSCSSCCBCTTSSBSEEECTTTCCEEECSSCTTCCB
T ss_pred HCCCEEEEEEeccccccccHHHHHhhcCCCCCCccceeecCCCCCCCCccccccCCCccccccCCCCcEEECcccCcCCc
Confidence 99999999999999999876543221 11111 23321 11 1111 11 1 1378
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCcc----ccCCCccC-chHHHHHHHHHHHHH
Q psy9001 380 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD----EYFGLNVD-TDALIYLMVANKFLH 454 (1351)
Q Consensus 380 ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~----~~~~~~~~-~~~~~f~~~~~~~v~ 454 (1351)
||++||+||++|+++++||++ +||||||||+|.+|... .+|..... .+.+...+ .+..+||+++++.++
T Consensus 184 LN~~np~Vr~~l~~~~~~Wl~-~gvDGfRlDa~~~i~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~ 257 (570)
T 1m53_A 184 LNWDNPKVREDLYAMLRFWLD-KGVSGMRFDTVATYSKI-----PGFPNLTPEQQKNFAEQYTMGPNIHRYIQEMNRKVL 257 (570)
T ss_dssp BCTTSHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSSCC-----TTCCCCCHHHHHTHHHHTTCCTTHHHHHHHHHHHTG
T ss_pred cCCCCHHHHHHHHHHHHHHHH-cCCCEEEEccccccccc-----cccccCCCcccccccccccCchHHHHHHHHHHHHHh
Confidence 999999999999999999997 99999999999998432 11211100 00000011 134578888888887
Q ss_pred hhCCCeEEEEEcCCC
Q psy9001 455 DKYPEIITIAEDVSG 469 (1351)
Q Consensus 455 ~~~P~~~~iaE~~~~ 469 (1351)
+. +++++|||.|.+
T Consensus 258 ~~-~~~~~vgE~~~~ 271 (570)
T 1m53_A 258 SR-YDVATAGEIFGV 271 (570)
T ss_dssp GG-SCCEEEEECTTC
T ss_pred cc-CCeEEEecccCC
Confidence 65 588999998854
|
| >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-41 Score=422.37 Aligned_cols=385 Identities=15% Similarity=0.123 Sum_probs=242.1
Q ss_pred cccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEEEecCCCCCeeee
Q psy9001 788 EMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPVVGHAYE 866 (1351)
Q Consensus 788 ~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~~~~~~~~~d 866 (1351)
+|++ ..|+| +++||+...| . |+|+|+..+| + .++||||+++..++. ++.+
T Consensus 9 ~l~~~~~g~w--------------~~~i~~~~~g-------~-Y~y~v~~~~g---~--~~~DPya~~~~~~~~--~~~~ 59 (637)
T 1gjw_A 9 YCKEKATGKR--------------IYAVPKLWIP-------G-FFKKFDEKSG---R--CFVDPYELGAEITDW--ILNQ 59 (637)
T ss_dssp HHHHHCCCCC--------------CEEECGGGSC-------T-TCCCCEEETT---E--EEECHHHHHHHHHHH--HHTT
T ss_pred HHhhcCCCeE--------------EEEeCCCCCC-------c-ceEEEECCCC---C--EECCccccceecCce--eccC
Confidence 5654 58999 8888887666 5 6888887778 3 689999999988754 2222
Q ss_pred eeeeCCCCCCCCccccCCCC-C-CCCceEEEeecCCcccCCCcccccccccccccceeccCCCcccccccccccccCCce
Q psy9001 867 QRIWNPKPQDKHKWTSSKPK-K-PENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGK 944 (1351)
Q Consensus 867 ~~~~~p~~~~~~~w~~~~p~-~-p~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~gi 944 (1351)
... ..-.++..|..++++ . .++++|||+|||.|+.....+. ......-....+..|+|.++..++++|+++|++.
T Consensus 60 ~~~--~~~~~p~~w~~~~~~~~~~~~~~iYe~~~~~f~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~l~~l~~lG~~~ 136 (637)
T 1gjw_A 60 SRE--WDYSQPLSFLKGEKTPDWIKRSVVYGSLPRTTAAYNHKGS-GYYEENDVLGFREAGTFFKMMLLLPFVKSLGADA 136 (637)
T ss_dssp CCS--SCTTSCHHHHHTCCSGGGGGGCCEEEECHHHHTCCCTTSS-SCCCSBCTTSCBCSCCHHHHHHTHHHHHHHTCCE
T ss_pred CCc--ccccCchhhhhccCccCchhhCeEEEEeeccccCCCCCCC-CccccccccchhccccHHHHHHHHHHHHHcCCCE
Confidence 210 011123466555532 2 3889999999999986432111 0000000011245688888888888999988876
Q ss_pred EEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccc
Q psy9001 945 WELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDEC 1023 (1351)
Q Consensus 945 wel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~ 1023 (1351)
++|+- .+.+ . . ....| ..++|| ++||+
T Consensus 137 v~l~P-------i~~~-----~-------~-------------------------~~~~g--------~~~~gY~~~~~~ 164 (637)
T 1gjw_A 137 IYLLP-------VSRM-----S-------D-------------------------LFKKG--------DAPSPYSVKNPM 164 (637)
T ss_dssp EEECC-------CEEE-----C-------C-------------------------SSCSS--------SSCCTTSEEEEE
T ss_pred EEeCC-------Ceec-----c-------c-------------------------ccccC--------CCCCccCCCCcC
Confidence 66661 0000 0 0 00001 125789 89999
Q ss_pred cccCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccCCccc------cCcC------------------CCC
Q psy9001 1024 HKAGLFGT--------PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD------GLNE------------------FDG 1071 (1351)
Q Consensus 1024 ~idp~yGt--------~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~------~l~~------------------~dg 1071 (1351)
+++|+||| .+|||+||++||++||+||||||+||++.++.. ++.. +++
T Consensus 165 ~~~~~~g~~~~~~~~~~~~~~~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~~~p~~f~~~~~~~~~~y~~p~~~~l~~~~ 244 (637)
T 1gjw_A 165 ELDERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRAEELPFKV 244 (637)
T ss_dssp EECGGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEEECTTEEETTCGGGTTCGGGSCCEEGGGSTTCCCCCCTTSCSBC
T ss_pred CcCcccCCCcccccchHHHHHHHHHHHHHCCCEEEEEECcCCCcCcchhhhhCCceeEecccccccccCCccccccccCC
Confidence 99999999 699999999999999999999999999987631 1100 000
Q ss_pred CCC-----c-----------cccCC------------------------------CCC--------CCCCCC--------
Q psy9001 1072 TQA-----C-----------FFHDG------------------------------PRG--------THPLWD-------- 1089 (1351)
Q Consensus 1072 ~~~-----~-----------yf~~~------------------------------~~g--------~~~~w~-------- 1089 (1351)
... . .|... ... ..+.|+
T Consensus 245 ~~~~~~~~~Y~~~~~~~~~~~f~~~~~~~~p~~w~~~~~~~g~~~~~~~~~fg~~~~~~~~dw~~~~~~~w~d~~~l~~~ 324 (637)
T 1gjw_A 245 PDEDELEIIYNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNILELIVKEFGIITPPGFSDLINDPQPTWDDVTFLRLY 324 (637)
T ss_dssp CCHHHHHHHHTSHHHHHHHTTBCCCHHHHCHHHHHHHHTCSSCHHHHHHHHHSEECCCBCCSSBTCCSCCBTTEEECCCB
T ss_pred cccccccccccChhhhhhhhhcccCccccChhhcccccccccchhhhhhhccccccCcccccccccCCCCcccceeeecc
Confidence 000 0 01100 000 012232
Q ss_pred ---------------------------CCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCC
Q psy9001 1090 ---------------------------SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGH 1142 (1351)
Q Consensus 1090 ---------------------------~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~ 1142 (1351)
..++|++||+||++|+++++||++||||||||||+|.+|
T Consensus 325 ~~~p~~~~~~~~~~~~dy~~f~~~~~~~~~ln~~np~V~~~l~d~~~~W~~e~gvDGfRlD~a~~l-------------- 390 (637)
T 1gjw_A 325 LDHPEASKRFLDPNQPPYVLYDVIKASKFPGKEPNRELWEYLAGVIPHYQKKYGIDGARLDMGHAL-------------- 390 (637)
T ss_dssp SSCCGGGGGGSCTTCCCCCCHHHHCTTTSCCSSBCHHHHHHHTTHHHHHHHHHCCCEEEESSGGGS--------------
T ss_pred cCCchhhhhccccCCCcceecchhhhcccCcccCCHHHHHHHHHHHHHHhhhcCCceEEecchhhC--------------
Confidence 122489999999999999999999999999999999987
Q ss_pred cccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCch
Q psy9001 1143 YDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGK 1222 (1351)
Q Consensus 1143 ~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~ 1222 (1351)
+..||+++++.+++.+|++++|||.|...... .+.. .|||..++. .
T Consensus 391 ------------~~~f~~~~~~~v~~~~p~~~ligE~~~~~~~~--~~~~--~gfd~~~~~------------------~ 436 (637)
T 1gjw_A 391 ------------PKELLDLIIKNVKEYDPAFVMIAEELDMEKDK--ASKE--AGYDVILGS------------------S 436 (637)
T ss_dssp ------------CHHHHHHHHHHHHHHCTTCEEEECCCCGGGHH--HHHH--HTCSEECCC------------------H
T ss_pred ------------CHHHHHHHHHHHHHhCCCeEEEEeCCCCcchh--hHhh--cCCceEecc------------------c
Confidence 35789999999999999999999998643211 1221 245532211 1
Q ss_pred hHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCC-HHHHHH
Q psy9001 1223 YKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQ-TESNMN 1301 (1351)
Q Consensus 1223 ~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~-~~~~r~ 1301 (1351)
+.+.. ++..+. ... .+ + ...+... +||++|||+.|. ..... .+++++
T Consensus 437 ~~~~~--------~~~~~~-----~~~-----~~---l-~~~~~~~-----v~fl~nHD~~Rl-----~~~~~~~~~~~~ 484 (637)
T 1gjw_A 437 WYFAG--------RVEEIG-----KLP-----DI---A-EELVLPF-----LASVETPDTPRI-----ATRKYASKMKKL 484 (637)
T ss_dssp HHHHT--------CTTTGG-----GHH-----HH---H-HTCSSCE-----EECSCCTTSCCG-----GGSTTHHHHHHH
T ss_pred hhccc--------cHHHHH-----HHH-----Hh---h-hccchHH-----hhcccCCCcccc-----cccccCcHHHHH
Confidence 11110 000000 000 00 0 0112222 899999999753 33333 356788
Q ss_pred HHHHHHccC-CccEEEee-cccCC-----CC-ccceeeccCCc
Q psy9001 1302 GFGIQTLPT-QSPLYLVA-KIEKP-----CS-TREVVKAPLPF 1336 (1351)
Q Consensus 1302 A~allltsp-GiP~If~g-~~~~~-----~~-~~~~~~~p~~~ 1336 (1351)
|++++||+| |+|||||| |+... +. ....++.||||
T Consensus 485 a~~l~l~~~~GiP~iy~GdE~G~~~p~~~g~~~d~~~R~~~~~ 527 (637)
T 1gjw_A 485 APFVTYFLPNSIPYVNTGQEIGEKQPMNLGLDTDPNLRKVLSP 527 (637)
T ss_dssp HHHHHHTSTTEEEEEETTGGGTCCSCSCCCSSCCGGGGGCSCT
T ss_pred HHHHHHHcCCCCcEEEeeeecCccCccccCCCCCccccccccc
Confidence 888999998 99999999 66654 21 23456777765
|
| >1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=391.61 Aligned_cols=216 Identities=16% Similarity=0.218 Sum_probs=158.8
Q ss_pred CCCCCCceEEEEecCCccC--CCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccc
Q psy9001 173 PKKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 250 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~ft~--~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~ 250 (1351)
|.++++++|||+|+++|+. .++.|+|+||+++ |||||+||||+ |||||||+ +
T Consensus 3 ~~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~-ldyl~~LGv~~----I~l~Pi~~--------------------~- 56 (558)
T 1uok_A 3 KQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISK-LDYLKELGIDV----IWLSPVYE--------------------S- 56 (558)
T ss_dssp CCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHTT-HHHHHHHTCCE----EEECCCEE--------------------C-
T ss_pred chhhhcCeEEEEecHHhcCCCCCCcCCHHHHHHH-HHHHHHcCCCE----EEECCccc--------------------C-
Confidence 4467899999999999964 4568999999998 99999999999 99999553 2
Q ss_pred ccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHH
Q psy9001 251 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 330 (1351)
Q Consensus 251 ~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H 330 (1351)
+ ..+|||+++||+ +++ |+|||++||++||++||
T Consensus 57 -~------~~~~GYd~~dy~---------------------~id-------------------~~~Gt~~df~~lv~~~h 89 (558)
T 1uok_A 57 -P------NDDNGYDISDYC---------------------KIM-------------------NEFGTMEDWDELLHEMH 89 (558)
T ss_dssp -C------CTTTTSSCSEEE---------------------EEC-------------------GGGCCHHHHHHHHHHHH
T ss_pred -C------CCCCCCCccccc---------------------ccC-------------------cccCCHHHHHHHHHHHH
Confidence 2 124899999999 777 99999999999999999
Q ss_pred HcCCEEEEEeeccccccCCcCCcccCCCCCC---cCccc-CC-CCCC-CC---------C----------------CCcc
Q psy9001 331 KAGLYVLLDVVHSHASKNVLDGLNEFDGTQA---CFFHD-GP-RGTH-PL---------W----------------DSRL 379 (1351)
Q Consensus 331 ~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~---~yy~~-~~-~~~~-~~---------w----------------~~~~ 379 (1351)
++||+||||+|+|||+.++.|+.....+..+ .||.. ++ ++.. .+ | +.++
T Consensus 90 ~~Gi~VilD~V~NH~s~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~~~~~f~~~~w~~~~~~~~~y~~~f~~~~pd 169 (558)
T 1uok_A 90 ERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDEYYLHLFSKKQPD 169 (558)
T ss_dssp HTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSSCSSCBBCTTSSBSEEEETTTTEEEECSSCTTSCB
T ss_pred HCCCEEEEEEecccccccchHHHHHhcCCCCCcccceEeccCcCCCCCccccccCCCccccccCCcCcEEeecccccccc
Confidence 9999999999999999988665322212221 23321 11 1111 11 1 1368
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCcc--ccCC-----CccCchHHHHHHHHHHH
Q psy9001 380 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD--EYFG-----LNVDTDALIYLMVANKF 452 (1351)
Q Consensus 380 ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~--~~~~-----~~~~~~~~~f~~~~~~~ 452 (1351)
||++||+||++|+++++||++ +||||||+|+|.+|... .+ |..... +.++ .....+..+||+++++.
T Consensus 170 Ln~~np~Vr~~i~~~~~~W~~-~gvDGfRlDa~~~i~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (558)
T 1uok_A 170 LNWDNEKVRQDVYEMMKFWLE-KGIDGFRMDVINFISKE-EG----LPTVETEEEGYVSGHKHFMNGPNIHKYLHEMNEE 243 (558)
T ss_dssp BCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCCC-TT----CCCCCCCCSSCBCCGGGTTTCTTHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHH-cCCCEEEEccccccccc-cc----cCCCCCcccccccccccccCChHHHHHHHHHHHH
Confidence 999999999999999999997 99999999999988432 11 110000 0000 01122356788888887
Q ss_pred HHhhCCCeEEEEEcCC
Q psy9001 453 LHDKYPEIITIAEDVS 468 (1351)
Q Consensus 453 v~~~~P~~~~iaE~~~ 468 (1351)
+++. +++++|||.|.
T Consensus 244 ~~~~-~~~~~vgE~~~ 258 (558)
T 1uok_A 244 VLSH-YDIMTVGEMPG 258 (558)
T ss_dssp TGGG-SCCEEEEECTT
T ss_pred hhcc-CCeEEEEeccC
Confidence 7665 48889999874
|
| >3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=396.18 Aligned_cols=219 Identities=18% Similarity=0.206 Sum_probs=160.9
Q ss_pred CCCCCCceEEEEecCCccC--CCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccc
Q psy9001 173 PKKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 250 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~ft~--~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~ 250 (1351)
|.++++++|||+|+++|+. +++.|+|+||+++ |||||+||||+ |||||||+ +
T Consensus 12 ~~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~-Ldyl~~LGv~~----i~l~Pi~~--------------------~- 65 (589)
T 3aj7_A 12 PKWWKEATFYQIYPASFKDSNDDGWGDMKGIASK-LEYIKELGADA----IWISPFYD--------------------S- 65 (589)
T ss_dssp CCHHHHCCEEEECGGGSCCSSSSSSCCHHHHHHT-HHHHHHHTCSE----EEECCCEE--------------------C-
T ss_pred ccchhhCeEEEEEhHHhcCCCCCCccCHHHHHHH-HHHHHHcCCCE----EEECCccc--------------------C-
Confidence 3467899999999999964 4568999999998 99999999999 99999553 2
Q ss_pred ccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHH
Q psy9001 251 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 330 (1351)
Q Consensus 251 ~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H 330 (1351)
+ ..+|||+++||+ +++ |+|||++|||+||++||
T Consensus 66 -~------~~~~GY~~~dy~---------------------~id-------------------~~~Gt~~df~~lv~~~h 98 (589)
T 3aj7_A 66 -P------QDDMGYDIANYE---------------------KVW-------------------PTYGTNEDCFALIEKTH 98 (589)
T ss_dssp -C------CTTTTSSCSEEE---------------------EEC-------------------TTTCCHHHHHHHHHHHH
T ss_pred -C------CCCCCcCccccc---------------------ccc-------------------cccCCHHHHHHHHHHHH
Confidence 2 124999999999 777 99999999999999999
Q ss_pred HcCCEEEEEeeccccccCCcCCcccCCCCC---CcCccc-CCCC--------CCCCCC----------------------
Q psy9001 331 KAGLYVLLDVVHSHASKNVLDGLNEFDGTQ---ACFFHD-GPRG--------THPLWD---------------------- 376 (1351)
Q Consensus 331 ~~GI~VILDvV~NH~~~~~~~~~~~f~g~~---~~yy~~-~~~~--------~~~~w~---------------------- 376 (1351)
++||+||||+|+||++.++.|+.....+.. ..||.. +... ...+|.
T Consensus 99 ~~Gi~VilD~V~NH~~~~~~wf~~~~~~~~~~y~d~y~~~~~~~~~~~g~~~~p~~~~~~f~g~~w~~~~~~~~~y~~~f 178 (589)
T 3aj7_A 99 KLGMKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFDEKTQEFYLRLF 178 (589)
T ss_dssp HTTCEEEEEECCSBCCTTSHHHHHHTTCSSSTTGGGBCEECCSEECTTSCEECSSCBBCTTSSBSEEEETTTTEEEECSS
T ss_pred HCCCEEEEEecccccccchhHHHHHhcCCCCCCCCceeecCCcccccccCCCCCCcccccCCCccceecCCCCeEEECcc
Confidence 999999999999999998766432222211 223421 1110 011221
Q ss_pred ---CccCCCCCHHHHHHHHH-HHHHHHHHcCCCccccccccccccccCCCCC------CCCCCccccCCCccC-chHHHH
Q psy9001 377 ---SRLFNYSEIEVLRFLLS-NLRWYLDEYQFDGFRFDGVTSMLYHNHGCGE------GFSGHYDEYFGLNVD-TDALIY 445 (1351)
Q Consensus 377 ---~~~ln~~~p~v~~~l~~-~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~------~f~~~~~~~~~~~~~-~~~~~f 445 (1351)
.++||++||+||++|++ +++||++ +||||||||+|.+|......... +++.....+ ..+ .+..+|
T Consensus 179 ~~~~pdLN~~np~Vr~~l~~~~~~~Wl~-~gvDGfRlDa~~~i~~~~~~~d~~~~~~~~~~~~~~~~---~~n~~~~~~~ 254 (589)
T 3aj7_A 179 CSTQPDLNWENEDCRKAIYESAVGYWLD-HGVDGFRIDVGSLYSKVVGLPDAPVVDKNSTWQSSDPY---TLNGPRIHEF 254 (589)
T ss_dssp STTCCBBCTTCHHHHHHHHHHHTHHHHH-TTCCEEEETTGGGSCCCTTCCCCCCCCTTCSSBCCHHH---HSSCTTHHHH
T ss_pred CCCCCccCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEccccccccccCCCcCCcccccccccccccc---ccccHHHHHH
Confidence 26899999999999999 9999998 89999999999999542110000 010000000 011 235689
Q ss_pred HHHHHH----HHHhhCCCeEEEEEcCCC
Q psy9001 446 LMVANK----FLHDKYPEIITIAEDVSG 469 (1351)
Q Consensus 446 ~~~~~~----~v~~~~P~~~~iaE~~~~ 469 (1351)
|+++++ .+++ .|++++|||.|.+
T Consensus 255 l~~~~~~~~~~v~~-~~~~~~vgE~~~~ 281 (589)
T 3aj7_A 255 HQEMNQFIRNRVKD-GREIMTVGEMQHA 281 (589)
T ss_dssp HHHHHHHHHHHCSS-CCCCEEEEEEECC
T ss_pred HHHHHHHHHHHhcc-CCCeEEEEEeCCC
Confidence 999998 6666 7889999998754
|
| >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=387.12 Aligned_cols=353 Identities=15% Similarity=0.153 Sum_probs=220.4
Q ss_pred CCCCceEEEEecCCccCCC--C------------CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEE
Q psy9001 175 KPDNLKIYESHVGICTQEQ--K------------CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHT 240 (1351)
Q Consensus 175 ~~~~~vIYE~hvr~ft~~~--~------------~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~ 240 (1351)
+|++.+|||+|||+|+..+ . .|+|++++++ |||||+||||+ |||||||+..
T Consensus 5 ~w~~~viYqi~~~~F~~~~~~~~~~~~~~~~~~~gG~~~gi~~~-LdyL~~LGv~~----I~l~Pi~~~~---------- 69 (484)
T 2aaa_A 5 SWRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDH-LDYIEGMGFTA----IWISPITEQL---------- 69 (484)
T ss_dssp HHTTCCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHT-HHHHHTTTCCE----EEECCCEEEC----------
T ss_pred hhccCcEEEEeCccccCCCCCCCCCCCccccccCCCCHHHHHHH-HHHHHhcCCCE----EEeCccccCc----------
Confidence 4578899999999996432 1 2999999999 89999999999 9999966421
Q ss_pred ccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHH
Q psy9001 241 LTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPE 320 (1351)
Q Consensus 241 ~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~ 320 (1351)
....+....+|||++.||| +++ |+|||.+
T Consensus 70 -----------~~~~~~~~~~~GY~~~dy~---------------------~id-------------------~~~Gt~~ 98 (484)
T 2aaa_A 70 -----------PQDTADGEAYHGYWQQKIY---------------------DVN-------------------SNFGTAD 98 (484)
T ss_dssp -----------CCCBTTBCSTTSCSEEEEE---------------------EEC-------------------TTTCCHH
T ss_pred -----------ccccccCCCCCCcCccccc---------------------ccC-------------------cccCCHH
Confidence 0000112357999999999 777 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCc---ccCCCC-CCcCcccCCC-CC-------CCCCC------CccCCC
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL---NEFDGT-QACFFHDGPR-GT-------HPLWD------SRLFNY 382 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~---~~f~g~-~~~yy~~~~~-~~-------~~~w~------~~~ln~ 382 (1351)
|||+||++||++||+||||+|+||++.++.... ..|... ...+|+.... .. ...|. .++||+
T Consensus 99 df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~dln~ 178 (484)
T 2aaa_A 99 NLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTMVEDCWEGDTIVSLPDLDT 178 (484)
T ss_dssp HHHHHHHHHHTTTCEEEEEECCSBCCBSSCGGGCCGGGSBSCCSGGGBCCCCBCCCTTCHHHHHHSBEECSSSEECBBCT
T ss_pred HHHHHHHHHHHCCCEEEEEECcCCcCCCCCCCcccccccccCCcccccCCCCCcccCCCCccccccccccCccccCcccc
Confidence 999999999999999999999999998653110 112211 1233432110 01 12342 468999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCcccccccccccccc-------CC---CCCCCCCCc------cccCCCccCc------
Q psy9001 383 SEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHN-------HG---CGEGFSGHY------DEYFGLNVDT------ 440 (1351)
Q Consensus 383 ~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~-------~~---~~~~f~~~~------~~~~~~~~~~------ 440 (1351)
+||+||++|+++++||+++|||||||||+|.+|...- .+ .++.+.... .+.+....|.
T Consensus 179 ~np~v~~~l~~~~~~w~~~~gvDGfR~D~~~~i~~~f~~~~~~~~~~~~igE~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (484)
T 2aaa_A 179 TETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKASGVYCVGEIDNGNPASDCPYQKVLDGVLNYPIYWQL 258 (484)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSCGGGHHHHHHHHTSEEEECCCCSCHHHHGGGGGTSSEEBCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEecccccCCHHHHHHHHhcCCcEEEecCCCCChHHHHhhcccCCceeccHHHHHH
Confidence 9999999999999999999999999999999883210 00 122221110 0001110111
Q ss_pred ---------hHHHHHHHHHHHHHhhCCC---eEEEEEc-------------------------CCCCCCcccccccCCCC
Q psy9001 441 ---------DALIYLMVANKFLHDKYPE---IITIAED-------------------------VSGMPASCRPVTEGGTG 483 (1351)
Q Consensus 441 ---------~~~~f~~~~~~~v~~~~P~---~~~iaE~-------------------------~~~~p~~~~~~~~gg~g 483 (1351)
+.-.+...+.. ....+|. .+.+-|. .+|.|.|+++.|.|-.|
T Consensus 259 ~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~a~a~~l~~~G~P~iy~G~E~g~~~ 337 (484)
T 2aaa_A 259 LYAFESSSGSISNLYNMIKS-VASDCSDPTLLGNFIENHDNPRFAKYTSDYSQAKNVLSYIFLSDGIPIVYAGEEQHYAG 337 (484)
T ss_dssp HHHHSSTTSCHHHHHHHHHH-HHHHCSCGGGSEECSCCTTSCCGGGTCCCHHHHHHHHHHHHHSSSEEEEETTTTTTCCC
T ss_pred HHHHHcCCCCHHHHHHHHHH-HHHhCCChhhhceeccCCCccccccccCCHHHHHHHHHHHHhcCCccEEEecccccccC
Confidence 00011111111 1111221 0111110 26888999988876332
Q ss_pred CC---CcCC-cCCC-CCCCcHHHHHHHHHHhhhcccccccCC---cceEeecCCCcEEEEEeC-----ceEEEEeCCCCC
Q psy9001 484 FD---YRLE-IRPD-MSDMTVGTFDAAMNTTEERFKWLSADP---GYVSTKHEGDKVIIFERA-----GLLFAFNFNGTQ 550 (1351)
Q Consensus 484 fd---~~~~-~~~d-~~~~sl~~f~k~L~~Lr~~~~~L~~g~---~~~~~~~~~~~Vlaf~R~-----~ll~v~Nf~~~~ 550 (1351)
-. .+-. |... ....++.+++|+|++||+.+++++.+. .+..+. .++++++|.|. .++|++|+++.
T Consensus 338 ~~d~~~r~~~W~~~~~~~~~l~~~~~~Li~lRk~~~~~~~~~~~~~~~~~~-~~~~~~af~R~~~~~~~~~v~~N~~~~- 415 (484)
T 2aaa_A 338 GKVPYNREATWLSGYDTSAELYTWIATTNAIRKLAIAADSAYITYANDAFY-TDSNTIAMAKGTSGSQVITVLSNKGSS- 415 (484)
T ss_dssp CTTTTTCCCGGGGTTCTTCHHHHHHHHHHHHHHHHHHHCTTTTTSCCEEEE-EETTEEEEEESSTTTCEEEEEECSCTT-
T ss_pred CCCcchhhhccccCCCCchHHHHHHHHHHHHHHhchhhcccccccceeEEE-eCCCEEEEEEEcCCCcEEEEEEcCCCC-
Confidence 21 2222 4322 134678999999999999999876321 112222 34679999996 36788888865
Q ss_pred cccccccccccCcccccccccccccccceEeeecc----C-CceEEEccCCCCccCcccccCCCCceeeeecccCCcccE
Q psy9001 551 SFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQ----A-GKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNS 625 (1351)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~----~-g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~s 625 (1351)
. ..+. |.+|. + +.|+++++++. +. . +....
T Consensus 416 ~-~~~~------------------------~~l~~~~~~~g~~~~d~l~~~~--------------~~-----~-~~~g~ 450 (484)
T 2aaa_A 416 G-SSYT------------------------LTLSGSGYTSGTKLIEAYTCTS--------------VT-----V-DSSGD 450 (484)
T ss_dssp C-CCEE------------------------EEECCCCCCTTCEEEETTTTEE--------------EE-----C-CTTSC
T ss_pred C-ceEE------------------------EeccccccCCCCEEEECCCCCE--------------EE-----E-CCCcE
Confidence 1 1223 55543 2 46888876311 10 0 11234
Q ss_pred EEEEeCCcEEEEEEEC
Q psy9001 626 IKLYLPTRTGLILTTS 641 (1351)
Q Consensus 626 i~l~LPpls~~vl~~~ 641 (1351)
++|+|||.+++||.+.
T Consensus 451 ~~~~l~~~~~~V~~~~ 466 (484)
T 2aaa_A 451 IPVPMASGLPRVLLPA 466 (484)
T ss_dssp EEEEECTTCCEEEEEH
T ss_pred EEEEECCCceEEEEEh
Confidence 7899999999999875
|
| >4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=402.36 Aligned_cols=321 Identities=14% Similarity=0.150 Sum_probs=210.5
Q ss_pred CCceEEEeecCCcccCCCccccccccccc-cccee--ccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCcc
Q psy9001 889 ENLKIYESHVGICTQEQKCASYEDFVRVV-IPRIV--KQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEF 965 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~~~gty~~f~~~~-lp~ik--~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~ 965 (1351)
++++|||+|++.|+.......-.. ...| -|.-. -.|+|+++..++++|+++|++.+.|+
T Consensus 224 ~~~viYqI~p~rF~~~~~~n~~~~-~~~w~~~~~~~~~gGdl~Gi~~kLdyLk~LGvt~IwL~----------------- 285 (696)
T 4aee_A 224 MGTVYYQIFIDSFDNGDPNNDPPN-RIKKTVPREYGYYGGDLAGIMKHIDHLEDLGVETIYLT----------------- 285 (696)
T ss_dssp SSCCEEEECGGGTCCCCGGGCCSS-CCCCCSSCCSSCCCCCHHHHHTTHHHHHHHTCCEEEEC-----------------
T ss_pred hcCeEEEEehHHhcCCCCCCCccc-cccccCCcccccCCcCHHHHHHHhHHHHHcCCCEEEEC-----------------
Confidence 799999999999985421111000 0011 01111 35788888888899988887433333
Q ss_pred ceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHH
Q psy9001 966 AYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 1044 (1351)
Q Consensus 966 ~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~ 1044 (1351)
|++.++++||| ++||++|||+|||++|||+||++||+
T Consensus 286 ------------------------------------------Pi~~s~~~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~ 323 (696)
T 4aee_A 286 ------------------------------------------PIFSSTSYHRYDTIDYKSIDKYLGTMEDFEKLVQVLHS 323 (696)
T ss_dssp ------------------------------------------CCEEESSSSCCSEEEEEEECGGGCCHHHHHHHHHHHHH
T ss_pred ------------------------------------------CcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHH
Confidence 22334557999 99999999999999999999999999
Q ss_pred cCCEEEEEeecccccCCccccCc----CCCCCCCccccCCC--C-------------------------------CCCCC
Q psy9001 1045 AGLYVLLDVVHSHASKNVLDGLN----EFDGTQACFFHDGP--R-------------------------------GTHPL 1087 (1351)
Q Consensus 1045 ~GI~VILDVV~NHts~~~~~~l~----~~dg~~~~yf~~~~--~-------------------------------g~~~~ 1087 (1351)
+||+||||+|+|||+.+|..... .-++....||+... . +.+..
T Consensus 324 ~GikVilD~V~NHts~~~~~f~~~~~~~~~s~y~dwy~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~y~~ 403 (696)
T 4aee_A 324 RKIKIVLDITMHHTNPCNELFVKALREGENSPYWEMFSFLSPPPKEIVELMLKYIDGEECRSRELYKLDYFRNNKPFYEA 403 (696)
T ss_dssp TTCEEEEEECSSEECTTSHHHHHHHHHCTTSTTGGGBCBCSCCCHHHHHHHHHHHSSSSCCGGGGGGSHHHHHSCCSBCB
T ss_pred CCCEEEEeccccccCccCHHHHHHHhcCCCCCCCCceEecCCCCcccccccccccCCCccccccccccccccCCCCceee
Confidence 99999999999999998732211 11223344554221 1 01111
Q ss_pred C----CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHH
Q psy9001 1088 W----DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVAN 1163 (1351)
Q Consensus 1088 w----~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~ 1163 (1351)
| +..+||++||+||++|+++++||+ ++||||||||+|.+| +..||++++
T Consensus 404 ~~~~~~~pdLN~~np~Vr~~i~~~~~~Wl-~~GvDGfRlDaa~~i--------------------------~~~f~~~~~ 456 (696)
T 4aee_A 404 FFNIWLMAKFNHDNPRTVDYFIDITKFWI-DKGIDGFRIDVAMGI--------------------------HYSWMKQYY 456 (696)
T ss_dssp GGGCTTCEEBCTTCHHHHHHHHHHHHHHH-TTTCCEEEETTGGGS--------------------------CHHHHHHHH
T ss_pred ecCCCCchhhcCCCHHHHHHHHHHHHHHH-hCCCCEEEEechhhC--------------------------CHHHHHHHH
Confidence 1 235899999999999999999999 899999999999987 578999999
Q ss_pred HHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCC
Q psy9001 1164 KFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPG 1243 (1351)
Q Consensus 1164 ~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~ 1243 (1351)
+.+++.+|++++|||. ... ++. .+.+||..++..++ ..+.+.+..... ....
T Consensus 457 ~~v~~~~p~~~~igE~-~~~-----~~l-~~~~~d~~~n~~~~--------------~~~~~~~~~~~~---~~~~---- 508 (696)
T 4aee_A 457 EYIKNTYPDFLVLGEL-AEN-----PRI-YMDYFDSAMNYYLR--------------KAILELLIYKRI---DLNE---- 508 (696)
T ss_dssp HHHHHHCTTCEEEECC-CSC-----GGG-TTTTCSEEBCHHHH--------------HHHHHHHTSCCS---CHHH----
T ss_pred HHHHhhCCCcEEEecc-cch-----hhh-cCCccceEECcHHH--------------HHHHHHHhcCCC---CHHH----
Confidence 9999999999999998 222 222 23344422221111 111222211000 0000
Q ss_pred cccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccCCccEEEee-cccC
Q psy9001 1244 TVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEK 1322 (1351)
Q Consensus 1244 ~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~ 1322 (1351)
+..... .....+ |... ....+||++|||+.|.. ......+++++|++++||+||+||||+| |+..
T Consensus 509 ~~~~l~--------~~~~~~-~~~~-~~~~~nfl~nHD~~R~~----s~~~~~~~~kla~a~llt~pG~P~IYyGdE~G~ 574 (696)
T 4aee_A 509 FISRIN--------NVYAYI-PHYK-ALSLYNMLGSHDVPRIK----SMVQNNKLLKLMYVLIFALPGSPVIYYGDEIGL 574 (696)
T ss_dssp HHHHHH--------HHHTTS-CHHH-HHHCEECSCCTTSCCHH----HHHCCHHHHHHHHHHHHHSSSEEEEETTGGGTC
T ss_pred HHHHHH--------HHHHhc-chhh-hhheeEecCCCCCCeeh----hhcCCcHHHHHHHHHHHhCCCceEEEecccccc
Confidence 000000 000001 1100 01127999999997641 1122233789999999999999999999 8888
Q ss_pred CCCccceeeccCCcce
Q psy9001 1323 PCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1323 ~~~~~~~~~~p~~~~~ 1338 (1351)
.+.....+|.||||.-
T Consensus 575 ~~~~dp~~R~~~~W~~ 590 (696)
T 4aee_A 575 EGGRDPDNRRPMIWDR 590 (696)
T ss_dssp CCCSTTTTCCCCCCCG
T ss_pred cCCCCccccCCcCCCC
Confidence 8888888999999974
|
| >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=391.60 Aligned_cols=173 Identities=20% Similarity=0.322 Sum_probs=133.0
Q ss_pred CCCCceEEEEecCCccCCCC--------------------CCCHHHHHHhhhH--HHHHcCCCcCceeEEEeeccccccc
Q psy9001 175 KPDNLKIYESHVGICTQEQK--------------------CASYEDFVRVVIP--RIVKQGMAIPDKWIELLKKFKDEDW 232 (1351)
Q Consensus 175 ~~~~~vIYE~hvr~ft~~~~--------------------~G~~~gi~~~~L~--yLk~LGvt~~~~~I~L~Pif~~~~~ 232 (1351)
.+++.+|||+++++|...+. .|+|+||+++ || |||+||||+ |||||||+..
T Consensus 8 ~~~~~viYqI~p~rF~d~~~~n~~~~~~~~~~~~~~~~~~gGdl~gi~~k-Ld~~yLk~LGv~a----IwL~Pi~~~~-- 80 (680)
T 1cyg_A 8 NFTSDVVYQIVVDRFVDGNTSNNPSGALFSSGCTNLRKYCGGDWQGIINK-INDGYLTDMGVTA----IWISQPVENV-- 80 (680)
T ss_dssp CCTTCCEEEECGGGTCCSCGGGCCCGGGBCGGGCSTTSBCCCCHHHHHHH-HHTSTTTTTTCCE----EEECCCEEEC--
T ss_pred CCccceEEEEecccccCCCCCcCCCCcccCCCccccccccCcCHHHHHhh-cCHHHHHhCCCCE----EEeCccccCc--
Confidence 46899999999999964321 2999999999 99 999999999 9999977521
Q ss_pred CccceEEEccccccccccccc-cCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccc
Q psy9001 233 NMGNIVHTLTNRRYMEKTVAY-AESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECH 311 (1351)
Q Consensus 233 ~~~~ii~~~~~~~~~e~~~~~-~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~ 311 (1351)
.. +. ..+....+|||++.||+ +++
T Consensus 81 ---------------~~--~~~~~~g~~~~~GY~~~Dy~---------------------~id----------------- 105 (680)
T 1cyg_A 81 ---------------FS--VMNDASGSASYHGYWARDFK---------------------KPN----------------- 105 (680)
T ss_dssp ---------------CC--CCSSSSCCCSTTSCSEEEEE---------------------EEC-----------------
T ss_pred ---------------cc--cccccCCCCCCCCcCchhcc---------------------ccC-----------------
Confidence 00 10 00111357999999999 777
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCccc------C-CC--------CCCcCcccCCCCCCCCC-
Q psy9001 312 KAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE------F-DG--------TQACFFHDGPRGTHPLW- 375 (1351)
Q Consensus 312 id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~------f-~g--------~~~~yy~~~~~~~~~~w- 375 (1351)
|+||+++|||+||++||++||+||||+|+||++..+...... + ++ ..+.||+.... ..|
T Consensus 106 --p~~Gt~~df~~Lv~~aH~~GIkVilD~V~NHts~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~---~~~~ 180 (680)
T 1cyg_A 106 --PFFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDANMYFHHNGG---TTFS 180 (680)
T ss_dssp --TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTCCBCCSCB---CCCS
T ss_pred --cccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccccCcchhhcCccccCcccccccCCCchhceecCCC---CCcC
Confidence 999999999999999999999999999999999876322100 0 00 11235543221 123
Q ss_pred -----------CCccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 376 -----------DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 376 -----------~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
+.++||++||+||++|+++++||++ +||||||||+|.+|
T Consensus 181 ~~~~~~y~~~~~~pDLn~~np~Vr~~i~~~~~~Wl~-~GVDGfRlDa~~~i 230 (680)
T 1cyg_A 181 SLEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMWID-MGIDGIRMDAVKHM 230 (680)
T ss_dssp SHHHHHSSBSTTEEEBCTTSHHHHHHHHHHHHHHHT-TTCCEEEESCGGGS
T ss_pred CCccccccCcCCCCccccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccC
Confidence 2368999999999999999999999 99999999999988
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=383.63 Aligned_cols=193 Identities=22% Similarity=0.324 Sum_probs=154.3
Q ss_pred CCCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccccc
Q psy9001 173 PKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVA 252 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~ 252 (1351)
|.++++++|||+|+++|+.+ |+|++|+++ |||||+||||+ |||+|||+. +
T Consensus 7 ~~w~~~~viYei~~~~f~~~---G~~~~i~~~-l~yl~~lG~~~----i~l~Pi~~~----------------------~ 56 (449)
T 3dhu_A 7 QTQLRNEMIYSVFVRNYSEA---GNFAGVTAD-LQRIKDLGTDI----LWLLPINPI----------------------G 56 (449)
T ss_dssp CGGGGGCCEEEECHHHHSSS---CSHHHHHTT-HHHHHHHTCSE----EEECCCSCB----------------------C
T ss_pred chhhhcCEEEEEEhhhhCCC---CCHHHHHHh-HHHHHHcCCCE----EEECCcccc----------------------c
Confidence 44678999999999999864 999999998 99999999999 999996641 1
Q ss_pred ccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHc
Q psy9001 253 YAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 332 (1351)
Q Consensus 253 ~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~ 332 (1351)
........+|||+++||+ +++ |+||+.+|||+||++||++
T Consensus 57 ~~~~~~~~~~gY~~~dy~---------------------~i~-------------------~~~Gt~~~~~~lv~~~h~~ 96 (449)
T 3dhu_A 57 EVNRKGTLGSPYAIKDYR---------------------GIN-------------------PEYGTLADFKALTDRAHEL 96 (449)
T ss_dssp STTCCTTTCCTTSBSCTT---------------------SCC-------------------GGGCCHHHHHHHHHHHHHT
T ss_pred ccCCCCCCCCCcCccccc---------------------ccC-------------------cccCCHHHHHHHHHHHHHC
Confidence 111112235899999999 666 9999999999999999999
Q ss_pred CCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCC----CCCCCC-CccCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Q psy9001 333 GLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRG----THPLWD-SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGF 407 (1351)
Q Consensus 333 GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~----~~~~w~-~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGf 407 (1351)
||+||||+|+||++.++.+.. ..+.||...+.+ ....|. .++||+++|+||++|++++++|+++ ||||
T Consensus 97 Gi~vi~D~V~NH~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~w~~~~dLn~~np~Vr~~l~~~l~~w~~~--vDGf 169 (449)
T 3dhu_A 97 GMKVMLDIVYNHTSPDSVLAT-----EHPEWFYHDADGQLTNKVGDWSDVKDLDYGHHELWQYQIDTLLYWSQF--VDGY 169 (449)
T ss_dssp TCEEEEEECCSEECTTSHHHH-----HCGGGBCBCTTSCBCCSSTTCTTCEEBCTTSHHHHHHHHHHHHHHTTT--CSEE
T ss_pred CCEEEEEEccCcCcCccchhh-----cCccceEECCCCCcCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHh--CCEE
Confidence 999999999999998753211 113344433322 234565 4789999999999999999999995 9999
Q ss_pred ccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCC
Q psy9001 408 RFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVS 468 (1351)
Q Consensus 408 R~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~ 468 (1351)
|||+|.+| +..||+.+++.+++.+|+++++||.|.
T Consensus 170 RlDaa~~~--------------------------~~~f~~~~~~~~~~~~p~~~~~gE~~~ 204 (449)
T 3dhu_A 170 RCDVAPLV--------------------------PLDFWLEARKQVNAKYPETLWLAESAG 204 (449)
T ss_dssp EETTGGGS--------------------------CHHHHHHHHHHHHHHSTTCEEEECCCC
T ss_pred EEEChhhC--------------------------CHHHHHHHHHHHHhhCCCeEEEeccCC
Confidence 99999988 246788888888888888888888764
|
| >2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=390.90 Aligned_cols=209 Identities=13% Similarity=0.202 Sum_probs=154.6
Q ss_pred CCCCCCceEEEEecCCccC--CCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccc
Q psy9001 173 PKKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 250 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~ft~--~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~ 250 (1351)
|.++++++|||+|+++|+. .+..|+|+||+++ |||||+||||+ |||||||+ +
T Consensus 3 ~~W~~~~viYqi~~~~F~~~~~dg~Gdl~gi~~~-Ldyl~~LGv~~----I~l~Pi~~--------------------~- 56 (543)
T 2zic_A 3 KHWWHKATVYQIYPKSFMDTNGDGIGDLKGITSK-LDYLQKLGVMA----IWLSPVYD--------------------S- 56 (543)
T ss_dssp CCGGGGCCEEEECGGGTCCSSSSSSCCHHHHHHT-HHHHHHHTCSE----EEECCCEE--------------------C-
T ss_pred ccchhhCeEEEEEcHHhcCCCCCCccCHHHHHHH-HHHHHHcCCCE----EEECCccc--------------------C-
Confidence 4578999999999999964 4568999999998 99999999999 99999553 2
Q ss_pred ccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHH
Q psy9001 251 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 330 (1351)
Q Consensus 251 ~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H 330 (1351)
+ ..+|||+++||+ +++ |+|||++||++||++||
T Consensus 57 -~------~~~~GY~~~dy~---------------------~id-------------------p~~Gt~~df~~lv~~~h 89 (543)
T 2zic_A 57 -P------MDDNGYDIANYE---------------------AIA-------------------DIFGNMADMDNLLTQAK 89 (543)
T ss_dssp -C------CTTTTSSCSEEE---------------------EEC-------------------GGGCCHHHHHHHHHHHH
T ss_pred -C------CCCCCCCccccc---------------------ccC-------------------cccCCHHHHHHHHHHHH
Confidence 2 124999999999 777 99999999999999999
Q ss_pred HcCCEEEEEeeccccccCCcCCcccCCCCCC---cCccc-C-CCCC-----CCCC----------------CCccCCCCC
Q psy9001 331 KAGLYVLLDVVHSHASKNVLDGLNEFDGTQA---CFFHD-G-PRGT-----HPLW----------------DSRLFNYSE 384 (1351)
Q Consensus 331 ~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~---~yy~~-~-~~~~-----~~~w----------------~~~~ln~~~ 384 (1351)
++||+||||+|+|||+.++.|......+.++ .||.. + +... ...| +.++||++|
T Consensus 90 ~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~y~d~y~~~~~p~~~~~~f~~~~w~~~~~~~~~y~~~f~~~~pdLN~~n 169 (543)
T 2zic_A 90 MRGIKIIMDLVVNHTSDEHAWFIEAREHPDSSERDYYIWCDQPNDLESIFGGSAWQYDDKSDQYYLHFFSKKQPDLNWEN 169 (543)
T ss_dssp TTTCEEEEEECCSBCCTTSHHHHHHHHCTTSGGGGGBCEESSCCSCBCTTSSBSEEEETTTTEEEECSSCTTSCBBCTTC
T ss_pred HCCCEEEEEEecCcccccchhhHhhhcCCCCCCcceeecCCCCCcccccCCCCCCcccCCCCcEEECcccCCCCccCcCC
Confidence 9999999999999999987654321111111 23321 1 1100 0112 237899999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEE
Q psy9001 385 IEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 464 (1351)
Q Consensus 385 p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~ia 464 (1351)
|+||++|+++++||++ +||||||||+|.+|.. |.... .+ .......+||+++++.+++ .|++++||
T Consensus 170 p~Vr~~i~~~~~~Wl~-~GvDGfRlDa~~~i~~--------~~~~~-~~---~~~~~~~~~~~~~~~~v~~-~~~~~~vg 235 (543)
T 2zic_A 170 ANLRQKIYDMMNFWID-KGIGGFRMDVIDMIGK--------IPAQH-IV---SNGPKLHAYLKEMNAASFG-QHDLLTVG 235 (543)
T ss_dssp HHHHHHHHHHHHHHHT-TTCCEEEETTGGGTTC--------BGGGT-BC---SSCTTHHHHHHHHHHHTGG-GSCCEEEE
T ss_pred HHHHHHHHHHHHHHHh-cCCCEEEECCccceee--------cCCCc-cc---cccHHHHHHHHHHHHHHhc-cCCeEEEe
Confidence 9999999999999998 9999999999999842 10000 00 0011234677777776665 46777777
Q ss_pred EcCC
Q psy9001 465 EDVS 468 (1351)
Q Consensus 465 E~~~ 468 (1351)
|.|.
T Consensus 236 E~~~ 239 (543)
T 2zic_A 236 ETWG 239 (543)
T ss_dssp ECTT
T ss_pred eecC
Confidence 7764
|
| >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-38 Score=397.75 Aligned_cols=280 Identities=16% Similarity=0.189 Sum_probs=193.2
Q ss_pred CCCCceEEEEecCCccCCCC--------------------CCCHHHHHHhhhH--HHHHcCCCcCceeEEEeeccccccc
Q psy9001 175 KPDNLKIYESHVGICTQEQK--------------------CASYEDFVRVVIP--RIVKQGMAIPDKWIELLKKFKDEDW 232 (1351)
Q Consensus 175 ~~~~~vIYE~hvr~ft~~~~--------------------~G~~~gi~~~~L~--yLk~LGvt~~~~~I~L~Pif~~~~~ 232 (1351)
.+++.+|||+|+++|+..+. .|+|+||+++ || |||+||||+ |||||||+...-
T Consensus 11 ~~~~~viYqi~~~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl~gi~~k-Ld~~yLk~LGvt~----IwL~Pi~~~~~~ 85 (686)
T 1d3c_A 11 NFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINK-INDGYLTGMGVTA----IWISQPVENIYS 85 (686)
T ss_dssp CCTTCCEEEECGGGTCCSCGGGCCCGGGBCTTCCSTTSBCCCCHHHHHHH-HHTTTTGGGTCCE----EEECCCEEECCC
T ss_pred CCccCcEEEEecccccCCCCCcCCCCcccCCCccccccccCcCHHHHHHh-cCHHHHHhcCCCE----EEeCCcccCCcc
Confidence 46899999999999964321 2999999999 99 999999999 999997752100
Q ss_pred CccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCcccccccccccc
Q psy9001 233 NMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHK 312 (1351)
Q Consensus 233 ~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~i 312 (1351)
.. ...+.....+|||++.||+ +++
T Consensus 86 -------------~~----~~~g~~~~~~~GYd~~dy~---------------------~id------------------ 109 (686)
T 1d3c_A 86 -------------II----NYSGVNNTAYHGYWARDFK---------------------KTN------------------ 109 (686)
T ss_dssp -------------CE----ESSSCEECCTTSCSEEEEE---------------------EEC------------------
T ss_pred -------------cc----cccCccCCCCCCCCccccc---------------------ccC------------------
Confidence 00 0011001356999999999 777
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCccc------C-CC--------CCCcCcccCCCCCCCCCC-
Q psy9001 313 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE------F-DG--------TQACFFHDGPRGTHPLWD- 376 (1351)
Q Consensus 313 d~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~------f-~g--------~~~~yy~~~~~~~~~~w~- 376 (1351)
|+||+++|||+||++||++||+||||+|+||++..+...... + ++ ..+.||+.... ..|.
T Consensus 110 -p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NHts~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~---~~~~~ 185 (686)
T 1d3c_A 110 -PAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGG---TDFST 185 (686)
T ss_dssp -TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTCCBCCSCB---CCSSS
T ss_pred -cccCCHHHHHHHHHHHHHCCCEEEEEeCcCccccccccccchhhcCccccCCcccccCCCCccCceecCCC---CCcCC
Confidence 999999999999999999999999999999999876322100 0 11 11245543221 2332
Q ss_pred -----------CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHH
Q psy9001 377 -----------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIY 445 (1351)
Q Consensus 377 -----------~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f 445 (1351)
.++||++||+||++|+++++||++ +||||||||++.+|. .+|
T Consensus 186 ~~~~~y~~~~~~pDLn~~np~Vr~~i~~~l~~Wl~-~GVDGfRlDa~~~i~--------------------------~~f 238 (686)
T 1d3c_A 186 TENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWLD-LGIDGIRMNAVKHMP--------------------------FGW 238 (686)
T ss_dssp HHHHHHSBBTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSC--------------------------HHH
T ss_pred CccccccCcCCCCCcccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccCC--------------------------HHH
Confidence 358999999999999999999999 999999999999882 123
Q ss_pred HHHHHHHHHhhCCCeEEEEEcC----------------------------------------------------------
Q psy9001 446 LMVANKFLHDKYPEIITIAEDV---------------------------------------------------------- 467 (1351)
Q Consensus 446 ~~~~~~~v~~~~P~~~~iaE~~---------------------------------------------------------- 467 (1351)
|+++++.+++..| +++|||.|
T Consensus 239 ~~~~~~~v~~~~~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 317 (686)
T 1d3c_A 239 QKSFMAAVNNYKP-VFTFGQWFLGVNEVSPENHKFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQV 317 (686)
T ss_dssp HHHHHHHHHTTSC-CEEEECCCCCTTCCCHHHHHHHHHSSSEEBCHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHHHHhcCC-ceEEeccccCCcccchhhhhhhccCCCceeCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcccc
Confidence 4444444443332 44444443
Q ss_pred -----------------------------------CCCCCcccccccCCCCCCCcCC---cCCCCCCCcHHHHHHHHHHh
Q psy9001 468 -----------------------------------SGMPASCRPVTEGGTGFDYRLE---IRPDMSDMTVGTFDAAMNTT 509 (1351)
Q Consensus 468 -----------------------------------~~~p~~~~~~~~gg~gfd~~~~---~~~d~~~~sl~~f~k~L~~L 509 (1351)
+|.|.|+++.|.|-.+-.-..+ +..-.....+.+++|+|++|
T Consensus 318 ~~~~~fl~nHD~~R~~~~~~~~~~~~~a~a~llt~pG~P~IyyG~E~g~~~~~dp~~R~~~~~~~~~~~~~~~~~~Li~l 397 (686)
T 1d3c_A 318 DDQVTFIDNHDMERFHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSGGTDPDNRARIPSFSTSTTAYQVIQKLAPL 397 (686)
T ss_dssp GGCEECSCCTTSCCSSCTTSCHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCSTTGGGCCCCCCCSCSHHHHHHHHHTTH
T ss_pred ccceeeccCCCccccccccCCHHHHHHHHHHHHhCCCCcEEEecceecccCCCCcccccCCCCcCCCcHHHHHHHHHHHH
Confidence 3445555554444221100001 10001234578999999999
Q ss_pred hhcccccccCCcceEeecCCCcEEEEEeC----ceEEEEeCCCC
Q psy9001 510 EERFKWLSADPGYVSTKHEGDKVIIFERA----GLLFAFNFNGT 549 (1351)
Q Consensus 510 r~~~~~L~~g~~~~~~~~~~~~Vlaf~R~----~ll~v~Nf~~~ 549 (1351)
|+++++|+.|. +..+.. +++|++|.|. .++||+|+++.
T Consensus 398 Rk~~~al~~G~-~~~~~~-~~~v~af~R~~~~~~~lVv~N~s~~ 439 (686)
T 1d3c_A 398 RKCNPAIAYGS-TQERWI-NNDVLIYERKFGSNVAVVAVNRNLN 439 (686)
T ss_dssp HHHCHHHHHCE-EEEEEE-CSSEEEEEEECSSEEEEEEEECCTT
T ss_pred HhhChHhhCCc-EEEEee-CCCEEEEEEEcCCcEEEEEEECCCC
Confidence 99999999884 333322 4679999994 79999999976
|
| >3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=390.43 Aligned_cols=278 Identities=15% Similarity=0.206 Sum_probs=211.5
Q ss_pred CCceEEEEecCCcc--CCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccccccc
Q psy9001 177 DNLKIYESHVGICT--QEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 254 (1351)
Q Consensus 177 ~~~vIYE~hvr~ft--~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~ 254 (1351)
++++|||+|+|+|+ .....|+|+|++++ ||||++||||+ |||||||+ . +
T Consensus 36 ~~~viY~i~~~~f~~~~~~~~G~~~g~~~~-l~yl~~lGv~~----i~l~Pi~~--------------------~--~-- 86 (669)
T 3k8k_A 36 RADISYQLLLYSFADSDGDGYGDLNGVTQK-LDYLNQLGVKA----LWLSPIHP--------------------C--M-- 86 (669)
T ss_dssp CSCCEEEECTTTSCCSSSSSSCCHHHHHTT-HHHHHTTTCSE----EEECCCSS--------------------B--S--
T ss_pred cCcEEEEEEhHHhcCCCCCCCcCHHHHHHH-HHHHHHcCCCE----EEeccccc--------------------C--C--
Confidence 46999999999996 44668999999998 99999999999 99999553 2 1
Q ss_pred CCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCC
Q psy9001 255 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 334 (1351)
Q Consensus 255 ~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI 334 (1351)
.+|||++.+|+ +++ |+||+++||++||++||++||
T Consensus 87 -----~~~gY~~~dy~---------------------~i~-------------------~~~Gt~~d~~~lv~~~h~~gi 121 (669)
T 3k8k_A 87 -----SYHGYDVTDYT---------------------KVN-------------------PQLGTESDFDRLVTEAHNRGI 121 (669)
T ss_dssp -----STTCCSBSCTT---------------------SCC-------------------TTTCCHHHHHHHHHHHHHTTC
T ss_pred -----CCCCCCccccc---------------------ccc-------------------cccCCHHHHHHHHHHHHHcCC
Confidence 23999999999 777 999999999999999999999
Q ss_pred EEEEEeeccccccCCcCCcccCCCCCC---cCcccC--CC-----------------C------------CC--------
Q psy9001 335 YVLLDVVHSHASKNVLDGLNEFDGTQA---CFFHDG--PR-----------------G------------TH-------- 372 (1351)
Q Consensus 335 ~VILDvV~NH~~~~~~~~~~~f~g~~~---~yy~~~--~~-----------------~------------~~-------- 372 (1351)
+||||+|+||++.++.|......+..+ .||... +. + ..
T Consensus 122 ~vi~D~V~NH~~~~~~wf~~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~f~g~~~~~~~~~~ 201 (669)
T 3k8k_A 122 KIYLDYVMNHTGTAHPWFTEASSSSESPYRNYYSFSEDPKTDIAAGKIAMITQEGAAGYNAAEWFQVSDETAAVKGLLKF 201 (669)
T ss_dssp EEEEEECCSEEETTSHHHHHHHHCTTSTTGGGBCEESCHHHHHHTTCSTTSCSSGGGGCCGGGEEESCSCCCCEEEEEEE
T ss_pred EEEEEECcccCCCcCHHHHHHhhCCCCCccceeEECCCCcccccccccccccccccccCCCcccccccCCCccccccccc
Confidence 999999999999887543222112111 111110 00 0 00
Q ss_pred ------------------------------------------------------------------------CCC-----
Q psy9001 373 ------------------------------------------------------------------------PLW----- 375 (1351)
Q Consensus 373 ------------------------------------------------------------------------~~w----- 375 (1351)
..|
T Consensus 202 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (669)
T 3k8k_A 202 TLDWSNAPSPILVVSTGTKADEDNPDTGTDNAKYLYYGEDICKKFYDKGNNIYELTVDFESTWGLLIRTSNASFWPSGTK 281 (669)
T ss_dssp EEECTTTTSCEEEEEECSSCCCCCCCCCCTTCCEEEETTTEEEECEEEETTEEEEEEEEEESSCEEEESCCSSSCCTTCE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 001
Q ss_pred -------------------------------------------C-CccCCCC-------CHHHHHHHHHHHHHHHHHcCC
Q psy9001 376 -------------------------------------------D-SRLFNYS-------EIEVLRFLLSNLRWYLDEYQF 404 (1351)
Q Consensus 376 -------------------------------------------~-~~~ln~~-------~p~v~~~l~~~l~~W~~e~~v 404 (1351)
. .++||++ ||+| ++|+++++||+++ ||
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~~~~qPDLN~~~~~~~~~Np~V-~~l~dvl~~Wl~~-GV 359 (669)
T 3k8k_A 282 YGASSSSEKLALNKDFKLTNAGNPANIMFDSQQITYFHSHFCTDWFADLNYGPVDQAGESPAY-QAIADAAKGWIAR-GV 359 (669)
T ss_dssp EBBSSTTCCBCTTSCEECBCSSSCBCBCBTTCCCCEEECTTSCTTEEEBCCCSGGGGGGCHHH-HHHHHHHHHHHTT-TC
T ss_pred ccccccccccccccccccccccccccccccccccceeeeccccccCCccCCCCCccCCCCHHH-HHHHHHHHHHHHC-CC
Confidence 1 3689999 9999 9999999999997 99
Q ss_pred CccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHh------hCCCeEEEEEcC-----------
Q psy9001 405 DGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD------KYPEIITIAEDV----------- 467 (1351)
Q Consensus 405 DGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~------~~P~~~~iaE~~----------- 467 (1351)
||||+|+|.+|.... ...+..+||+++++.+++ .+|++++|||.|
T Consensus 360 DGFRlDaa~~i~k~~------------------~~~~~~~f~~e~~~~v~~~~~~~g~~pd~~lvGEv~~~~~~~~~y~~ 421 (669)
T 3k8k_A 360 DGLRLDAVKHIYHSE------------------TSEENPRFLKMFYEDMNAYYKQKGHTDDFYMIGEVLSEYDKVAPYYK 421 (669)
T ss_dssp CEEEETTGGGSSSCS------------------SSSHHHHHHHHHHHHHHHHHHHTTCCSCCEEEECCCSCHHHHGGGGG
T ss_pred CEEEEechhhhhhcc------------------CCCccHHHHHHHHHHHHHHhhhcccCCCeEEEeccCCCHHHHHHHhc
Confidence 999999999983221 122467899999999998 889999999976
Q ss_pred -------------------------------------------------------------------------------C
Q psy9001 468 -------------------------------------------------------------------------------S 468 (1351)
Q Consensus 468 -------------------------------------------------------------------------------~ 468 (1351)
+
T Consensus 422 ~l~~vfnF~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Fl~NHD~~R~~s~~g~d~~~~kla~allltlp 501 (669)
T 3k8k_A 422 GLPALFEFSFWYRLEWGINNSTGCYFAKDILSYQQKYANYRSDYIEATKLSNHDEDRTSSKLGKSADKCKLAAAVLLTSA 501 (669)
T ss_dssp TCSEEECHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTCTTCEEECCSCCTTSCCHHHHTTTCHHHHHHHHHHHHTSS
T ss_pred cCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcccceeeeeccCCCCCccccccCCCHHHHHHHHHHHHhCC
Confidence 5
Q ss_pred CCCCcccccccCCCCCCC------cCC--cCC-------C-----------------CCCCcHHHHHHHHHHhhhccccc
Q psy9001 469 GMPASCRPVTEGGTGFDY------RLE--IRP-------D-----------------MSDMTVGTFDAAMNTTEERFKWL 516 (1351)
Q Consensus 469 ~~p~~~~~~~~gg~gfd~------~~~--~~~-------d-----------------~~~~sl~~f~k~L~~Lr~~~~~L 516 (1351)
|.|.|+++.|.|-.|... |-. |.. . ....++++|+|+|++||+++++|
T Consensus 502 G~P~IYyGdEiGm~~~~~~~d~~~Rtpm~W~~~~~~w~~~~~n~~~~~~~~nv~~q~~d~~sll~~yr~Li~LRk~~paL 581 (669)
T 3k8k_A 502 GHPYIYYGEELGLYGTKDNGDEYVRSPMLWGDSYTTNYTDKTDATVSKNVKTVADQQADTHSLLNIYFSLTRLRNTYPAL 581 (669)
T ss_dssp SCCEEETTTTTTCCCCSTTCGGGGSCCCCCSSTTCCCCCSCCCTTHHHHSCCHHHHHTCTTCHHHHHHHHHHHHHHCHHH
T ss_pred CccEEEecccccccCCCCCCCccccCCccCCCCCCCCCCcccccccccccccHHHhhcCcHHHHHHHHHHHHHHHhChhh
Confidence 788888888877444321 111 311 0 02568999999999999999999
Q ss_pred ccCCcce---EeecCC----CcEEEEEeC----ceEEEEeCCCC
Q psy9001 517 SADPGYV---STKHEG----DKVIIFERA----GLLFAFNFNGT 549 (1351)
Q Consensus 517 ~~g~~~~---~~~~~~----~~Vlaf~R~----~ll~v~Nf~~~ 549 (1351)
+.|. +. .+...+ ++|+||.|. .+|||+||+..
T Consensus 582 ~~G~-~~~~~~~~~~~~~~~~~v~ay~R~~~~e~~lVv~N~s~~ 624 (669)
T 3k8k_A 582 AEGN-MTKHSVYNESQEKDYKPIAAWYMTKDNEKLLVIHNFGGT 624 (669)
T ss_dssp HHCE-EEECSSSSGGGTTTCTTEEEEEEEETTEEEEEEEECSSS
T ss_pred cCCc-eEEeeeeeccCccCcCCEEEEEEEeCCCEEEEEEeCCCC
Confidence 9884 44 233333 679999995 79999999987
|
| >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-38 Score=382.06 Aligned_cols=353 Identities=14% Similarity=0.143 Sum_probs=220.5
Q ss_pred CCCCceEEEEecCCccCCC--C------------CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEE
Q psy9001 175 KPDNLKIYESHVGICTQEQ--K------------CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHT 240 (1351)
Q Consensus 175 ~~~~~vIYE~hvr~ft~~~--~------------~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~ 240 (1351)
.|++.+|||+||++|+..+ . .|+|++|+++ |||||+||||+ |||||||+.
T Consensus 5 ~w~~~~iYqi~~~~F~~~~~~~~~~~~~~~~~~~gG~~~gi~~~-LdyL~~lGvt~----I~l~Pi~~~----------- 68 (478)
T 2guy_A 5 DWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDK-LDYIQGMGFTA----IWITPVTAQ----------- 68 (478)
T ss_dssp HHTTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHT-HHHHHTTTCCE----EEECCCEEE-----------
T ss_pred hhccCcEEEEecccccCCCCCCCCCCCCcccccCCCCHHHHHHH-HHHHHhcCCCE----EEeCCcccC-----------
Confidence 4567899999999996432 1 2999999998 89999999999 999996641
Q ss_pred cccccccccccccc-CCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCH
Q psy9001 241 LTNRRYMEKTVAYA-ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTP 319 (1351)
Q Consensus 241 ~~~~~~~e~~~~~~-~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~ 319 (1351)
+.. .+....+|||++.||| +++ |+||++
T Consensus 69 -----------~~~~~~~~~~~~GY~~~d~~---------------------~id-------------------p~~Gt~ 97 (478)
T 2guy_A 69 -----------LPQTTAYGDAYHGYWQQDIY---------------------SLN-------------------ENYGTA 97 (478)
T ss_dssp -----------CCCCBTTBCCTTSCSEEEEE---------------------EEC-------------------TTSCCH
T ss_pred -----------CccccCCCCCCCCCCccccc---------------------ccC-------------------ccCCCH
Confidence 100 0011256999999999 777 999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeccccccCCcCCc---ccCCCC-CCcCcccCC-CCCC-------CCCC------CccCC
Q psy9001 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL---NEFDGT-QACFFHDGP-RGTH-------PLWD------SRLFN 381 (1351)
Q Consensus 320 ~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~---~~f~g~-~~~yy~~~~-~~~~-------~~w~------~~~ln 381 (1351)
+|||+||++||++||+||||+|+||++.++.... ..|... ...||+... ...+ ..|. .++||
T Consensus 98 ~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~g~~~~~~~dln 177 (478)
T 2guy_A 98 DDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLGDNTVSLPDLD 177 (478)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCCSGGGBCCSCBCCCTTCHHHHHHSBEECSSEEECBBC
T ss_pred HHHHHHHHHHHHCCCEEEEEECcccCCCCCCcccccccccCCCCchhhcCCCCcccCCCCCcccccccccCCCCCCCeeC
Confidence 9999999999999999999999999998653211 111111 123443311 1111 1343 36899
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcccccccccccccc-------CC---CCCCCCCCc------cccCCCccCch----
Q psy9001 382 YSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHN-------HG---CGEGFSGHY------DEYFGLNVDTD---- 441 (1351)
Q Consensus 382 ~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~-------~~---~~~~f~~~~------~~~~~~~~~~~---- 441 (1351)
+++|+||++|++++++|++++||||||+|+|.+|...- .+ .++.+.... .+.+....|..
T Consensus 178 ~~~~~V~~~l~~~~~~w~~~~gvDGfR~Da~~~~~~~f~~~~~~~~~~~~igE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (478)
T 2guy_A 178 TTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAGVYCIGEVLDGDPAYTCPYQNVMDGVLNYPIYYP 257 (478)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCGGGHHHHHHHHTSEEEECCCCSCHHHHGGGGGTSSEEBCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCEEEEeccccCCHHHHHHHHhcCCceEEeeecCCCchhHHhhhccCccccCcHHHHH
Confidence 99999999999999999999999999999999883211 00 122221110 01111111110
Q ss_pred -----------HHHHHHHHHHHHHhhCCC---eEEEEEc-------------------------CCCCCCcccccccCCC
Q psy9001 442 -----------ALIYLMVANKFLHDKYPE---IITIAED-------------------------VSGMPASCRPVTEGGT 482 (1351)
Q Consensus 442 -----------~~~f~~~~~~~v~~~~P~---~~~iaE~-------------------------~~~~p~~~~~~~~gg~ 482 (1351)
.-.+...+.. +....+. .+.+-|- .+|.|.|+++.|.|-.
T Consensus 258 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~a~a~~l~~pG~P~iy~G~E~g~~ 336 (478)
T 2guy_A 258 LLNAFKSTSGSMDDLYNMINT-VKSDCPDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIILNDGIPIIYAGQEQHYA 336 (478)
T ss_dssp HHHHHSSTTCCHHHHHHHHHH-HHHHSSCGGGSEECSCCTTSCCGGGTCCCHHHHHHHHHHHHHSSSEEEEETTGGGTCC
T ss_pred HHHHHHcCCCCHHHHHHHHHH-HHhhCcChhhceeeccCCCCcccccccCCHHHHHHHHHHHHcCCCccEEEeehhhccC
Confidence 0011111111 1111221 1111110 2688999998887743
Q ss_pred CCC---CcCC-cCCCC-CCCcHHHHHHHHHHhhhcccccccCC---cceEeecCCCcEEEEEeC-----ceEEEEeCCCC
Q psy9001 483 GFD---YRLE-IRPDM-SDMTVGTFDAAMNTTEERFKWLSADP---GYVSTKHEGDKVIIFERA-----GLLFAFNFNGT 549 (1351)
Q Consensus 483 gfd---~~~~-~~~d~-~~~sl~~f~k~L~~Lr~~~~~L~~g~---~~~~~~~~~~~Vlaf~R~-----~ll~v~Nf~~~ 549 (1351)
|-. .+-. |.... ...++.+++|+|++||+.++++..+. ....+. .++++++|.|. .++|++|+++.
T Consensus 337 ~~~~~~~r~~~W~~~~~~~~~l~~~~~~L~~lR~~~~~~~~~~~~~~~~~~~-~~~~~~af~R~~~~~~~~vv~~N~~~~ 415 (478)
T 2guy_A 337 GGNDPANREATWLSGYPTDSELYKLIASANAIRNYAISKDTGFVTYKNWPIY-KDDTTIAMRKGTDGSQIVTILSNKGAS 415 (478)
T ss_dssp CCSTTTTCCCGGGGTCCTTSHHHHHHHHHHHHHHHHHHHCTTTTTSCCEEEE-EETTEEEEEESSTTSCEEEEEECSCTT
T ss_pred CCCCccchhhhcccCCCcchHHHHHHHHHHHHHHhhhhcCCcccccceeEEe-eCCeEEEEEEEcCCCcEEEEEECCCCC
Confidence 322 2222 44321 34579999999999999875543221 112222 24679999996 36788898865
Q ss_pred CcccccccccccCcccccccccccccccceEeeec-----cCCceEEEccCCCCccCcccccCCCCceeeeecccCCccc
Q psy9001 550 QSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVE-----QAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRN 624 (1351)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~-----~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~ 624 (1351)
. ..+. |.++ ..+.|+++++++. +. .. ..+
T Consensus 416 -~-~~~~------------------------l~~~~~~~~~g~~~~dll~~~~--------------~~---~~---~~g 449 (478)
T 2guy_A 416 -G-DSYT------------------------LSLSGAGYTAGQQLTEVIGCTT--------------VT---VG---SDG 449 (478)
T ss_dssp -C-CCEE------------------------EEECCCCCCTTCEEEETTTTEE--------------EE---CC---TTS
T ss_pred -C-ceEE------------------------EeccCcccCCCCEEEEcccCcE--------------EE---EC---CCC
Confidence 2 2333 5554 2346788886421 11 11 123
Q ss_pred EEEEEeCCcEEEEEEECC
Q psy9001 625 SIKLYLPTRTGLILTTSP 642 (1351)
Q Consensus 625 si~l~LPpls~~vl~~~~ 642 (1351)
.++|+|||.+++||.+..
T Consensus 450 ~~~~~l~~~~~~v~~~~~ 467 (478)
T 2guy_A 450 NVPVPMAGGLPRVLYPTE 467 (478)
T ss_dssp CEEEEECTTCCEEEEEGG
T ss_pred EEEEEECCCcEEEEEehh
Confidence 588999999999999764
|
| >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=390.87 Aligned_cols=280 Identities=16% Similarity=0.162 Sum_probs=194.9
Q ss_pred CCCCCCceEEEEecCCccCCCC-----------------------CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccc
Q psy9001 173 PKKPDNLKIYESHVGICTQEQK-----------------------CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKD 229 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~ft~~~~-----------------------~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~ 229 (1351)
|+.+++.+|||+++++|...+. .|+|+||+++ |||||+||||+ |||+|||+.
T Consensus 3 ~~~~~~~viYqI~p~~F~d~d~~n~~~~~~~~~~d~~~~~~~~~~gGdl~gi~~k-LdyLk~LGv~a----IwL~Pi~~~ 77 (686)
T 1qho_A 3 SASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQK-LPYLKQLGVTT----IWLSPVLDN 77 (686)
T ss_dssp TSCCTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHT-HHHHHHHTCCE----EEECCCEEE
T ss_pred cccCccCcEEEEeccccCCCCcccCcccccccccCCCccccccccCCCHHHHHHh-hHHHHhcCCCE----EEECccccC
Confidence 4568899999999999953221 3999999999 99999999999 999997652
Q ss_pred cccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccc
Q psy9001 230 EDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDE 309 (1351)
Q Consensus 230 ~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~ 309 (1351)
. .. +... ....+|||++.||+ +++
T Consensus 78 ~-----------------~~--~~~~-g~~~~~GYd~~Dy~---------------------~id--------------- 101 (686)
T 1qho_A 78 L-----------------DT--LAGT-DNTGYHGYWTRDFK---------------------QIE--------------- 101 (686)
T ss_dssp C-----------------SS--CSST-TCCCTTSCSEEEEE---------------------EEC---------------
T ss_pred C-----------------cc--cccC-CCCCcCCcCccccc---------------------ccC---------------
Confidence 0 00 1100 01356999999999 777
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcc------cC-CC--------CC-CcCcccCCCCCCC
Q psy9001 310 CHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN------EF-DG--------TQ-ACFFHDGPRGTHP 373 (1351)
Q Consensus 310 ~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~------~f-~g--------~~-~~yy~~~~~~~~~ 373 (1351)
|+|||++|||+||++||++||+||||+|+||++..+..... .+ +| .. ..||+.... ..
T Consensus 102 ----p~~Gt~~df~~Lv~~aH~~GikVilD~V~NHts~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~f~~~~~--i~ 175 (686)
T 1qho_A 102 ----EHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDATKGYFHHNGD--IS 175 (686)
T ss_dssp ----TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEECSSSCTTTCCBCCSCB--CS
T ss_pred ----cccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccccCccccCCcccccCCCCcccCeeecCCC--cC
Confidence 99999999999999999999999999999999987632110 00 11 01 244543221 12
Q ss_pred CC-----------------CCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCC
Q psy9001 374 LW-----------------DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGL 436 (1351)
Q Consensus 374 ~w-----------------~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~ 436 (1351)
+| +.++||++||+||++|+++++||++ +||||||||++.+|.
T Consensus 176 ~w~~~~~~~y~~~~~~~~~~~pDLn~~np~Vr~~l~~~~~~Wl~-~GVDGfRlDa~~~i~-------------------- 234 (686)
T 1qho_A 176 NWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVA-HGADGLRIDAVKHFN-------------------- 234 (686)
T ss_dssp CTTCHHHHHHSBCEETTTEEEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSC--------------------
T ss_pred cCCCCcccceeecccCCcCCCCccccCCHHHHHHHHHHHHHHHh-cCCCEEEEeccccCC--------------------
Confidence 23 2368999999999999999999999 999999999999882
Q ss_pred ccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCC-----------------------------------------------
Q psy9001 437 NVDTDALIYLMVANKFLHDKYPEIITIAEDVSG----------------------------------------------- 469 (1351)
Q Consensus 437 ~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~----------------------------------------------- 469 (1351)
.+||+++++.+++..| +++|||.|.+
T Consensus 235 ------~~f~~~~~~~v~~~~~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~l~~~ 307 (686)
T 1qho_A 235 ------SGFSKSLADKLYQKKD-IFLVGEWYGDDPGTANHLEKVRYANNSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNM 307 (686)
T ss_dssp ------HHHHHHHHHHHHHHCC-CEEEECCCCCCTTSTTHHHHHHHHHHSSCEEBCHHHHHHHHHHHTSCSSCHHHHHHH
T ss_pred ------HHHHHHHHHHHHhcCC-ceEEeeeecCCCcccchhhhhhhcccCCCeeeccHHHHHHHHHHhcCCCCHHHHHHH
Confidence 2355555555555433 5555555543
Q ss_pred ------------------------------------------------CCCcccccccCCCCCCCcCC---cCCCCCCCc
Q psy9001 470 ------------------------------------------------MPASCRPVTEGGTGFDYRLE---IRPDMSDMT 498 (1351)
Q Consensus 470 ------------------------------------------------~p~~~~~~~~gg~gfd~~~~---~~~d~~~~s 498 (1351)
.|.|+++.|.|-.|-.-..+ +........
T Consensus 308 l~~~~~~~~~~~~~~~fl~NHD~~R~~s~~~~~~~~~~a~a~llt~pG~P~IYyG~E~g~~~~~d~~~R~~~~~~~~~~~ 387 (686)
T 1qho_A 308 VNQTGNEYKYKENLITFIDNHDMSRFLSVNSNKANLHQALAFILTSRGTPSIYYGTEQYMAGGNDPYNRGMMPAFDTTTT 387 (686)
T ss_dssp HHHHHHHCTTGGGCEECSCCTTSCCHHHHCCCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCCCCCCTTSH
T ss_pred HHHHHHhccchhhceeeccCCCCccccccCCCHHHHHHHHHHHHcCCCcCEEEecccccccCCCCccccccCCCCCCCcH
Confidence 33333333333111000000 000001235
Q ss_pred HHHHHHHHHHhhhcccccccCCcceEeecCCCcEEEEEeC----ceEEEEeCCCC
Q psy9001 499 VGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERA----GLLFAFNFNGT 549 (1351)
Q Consensus 499 l~~f~k~L~~Lr~~~~~L~~g~~~~~~~~~~~~Vlaf~R~----~ll~v~Nf~~~ 549 (1351)
+.+++|+|++||+++++|+.|. +..+.. +++|++|.|. .+|||+|+++.
T Consensus 388 ~~~~~~~Li~lRk~~~al~~G~-~~~~~~-~~~v~af~R~~~~~~~lV~~N~~~~ 440 (686)
T 1qho_A 388 AFKEVSTLAGLRRNNAAIQYGT-TTQRWI-NNDVYIYERKFFNDVVLVAINRNTQ 440 (686)
T ss_dssp HHHHHHHHHHHHHHCHHHHHCE-EEEEEE-CSSEEEEEEEETTEEEEEEEECCTT
T ss_pred HHHHHHHHHHHHhhCHHhhcCc-eEEEee-CCCEEEEEEECCCcEEEEEEECCCC
Confidence 7899999999999999999884 333322 4679999995 79999999976
|
| >1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=386.84 Aligned_cols=268 Identities=17% Similarity=0.209 Sum_probs=174.0
Q ss_pred CCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccC---cCCCCCCCccccCCCCCC--
Q psy9001 1011 GTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL---NEFDGTQACFFHDGPRGT-- 1084 (1351)
Q Consensus 1011 ~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l---~~~dg~~~~yf~~~~~g~-- 1084 (1351)
.++.+||| ++||++|||+|||++|||+||++||++||+||||+|+|||+..|.... ...+.....||...+...
T Consensus 59 ~~~~~~GYd~~dy~~idp~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~y~d~y~~~~~~~~~ 138 (488)
T 1wza_A 59 KSPSYHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDT 138 (488)
T ss_dssp ECSSSSCCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCC
T ss_pred cCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccccCccHhhhhhhcCCCCCCcCeeecCCCCCCC
Confidence 34557999 999999999999999999999999999999999999999999873221 111222334543221110
Q ss_pred -------CCCC--------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCc
Q psy9001 1085 -------HPLW--------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY 1143 (1351)
Q Consensus 1085 -------~~~w--------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~ 1143 (1351)
.+.| +..+||++||+||++|+++++||+++ ||||||||+|.+|...
T Consensus 139 ~~~~~~~~~~w~~~~~~~~~~~f~~~~pdln~~np~Vr~~i~~~~~~Wl~~-gvDGfR~Da~~~i~~~------------ 205 (488)
T 1wza_A 139 KETKLDGGRVWHYSPTGMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDGAMHIFPP------------ 205 (488)
T ss_dssp CBCSSSCBCSEEEETTEEEECSSCTTSCBBCTTSHHHHHHHHHHHHHHHHT-TCCEEEEECCCTTSCG------------
T ss_pred CCccccCCCcccccCCceEEeccCCCCcccccCCHHHHHHHHHHHHHHHHc-CCCChhHhhHhhhccc------------
Confidence 1112 23699999999999999999999999 9999999999988421
Q ss_pred ccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchh
Q psy9001 1144 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKY 1223 (1351)
Q Consensus 1144 ~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~ 1223 (1351)
........||+++++.+++.+| +++|||.|.+ +..+.++... ||+..++..++ ..+
T Consensus 206 ------~~~~~~~~~~~~~~~~~~~~~p-~~~vgE~~~~-~~~~~~~~~~--~~~~~~~f~~~--------------~~~ 261 (488)
T 1wza_A 206 ------AQYDKNFTWWEKFRQEIEEVKP-VYLVGEVWDI-SETVAPYFKY--GFDSTFNFKLA--------------EAV 261 (488)
T ss_dssp ------GGTTHHHHHHHHHHHHHTTTSC-CEEEEECCSC-HHHHGGGGTT--TCSEEBCHHHH--------------HHH
T ss_pred ------cCcchHHHHHHHHHHHHhhcCC-CEEEEEeCCC-HHHHHHHHhc--CCCEEECHHHH--------------HHH
Confidence 0124578999999999999999 9999999973 3333333221 23321111111 011
Q ss_pred HhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCC-CccceeeecccCCCCCcCCcccccccC--CHHHHH
Q psy9001 1224 KVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTR-TGIIDEVNLLNNVREERNNENNMKRYI--QTESNM 1300 (1351)
Q Consensus 1224 rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~-~~~~~~vnfv~nHD~~rn~~~r~~~~~--~~~~~r 1300 (1351)
...+... .... +..... .+ ...|.... ......++|++|||+.|. .... ..++++
T Consensus 262 ~~~~~~~-----~~~~----l~~~l~--~~------~~~~~~~~~~~~~~~~~fl~nHD~~R~-----~~~~~~~~~~~~ 319 (488)
T 1wza_A 262 IATAKAG-----FPFG----FNKKAK--HI------YGVYDREVGFGNYIDAPFLTNHDQNRI-----LDQLGQDRNKAR 319 (488)
T ss_dssp HHHHHHT-----CSHH----HHHHHH--HH------HHHHHHHTCTTSCCCBCBSCCTTSCCH-----HHHTTTCHHHHH
T ss_pred HHhhccC-----CHHH----HHHHHH--HH------HHhhhcccccccceeeeeccCCCcchh-----hhhhcCCHHHHH
Confidence 1111000 0000 000000 00 00000000 000111789999999864 2222 347889
Q ss_pred HHHHHHHccCCccEEEee-cccCCCCc-cceeeccCCcc
Q psy9001 1301 NGFGIQTLPTQSPLYLVA-KIEKPCST-REVVKAPLPFG 1337 (1351)
Q Consensus 1301 ~A~allltspGiP~If~g-~~~~~~~~-~~~~~~p~~~~ 1337 (1351)
+|++++||+||+||||+| |+...+.. ...+|.||+|.
T Consensus 320 la~~~llt~pG~P~iy~G~E~G~~~~~~d~~~R~pm~w~ 358 (488)
T 1wza_A 320 VAASIYLTLPGNPFIYYGEEIGMRGQGPHEVIREPFQWY 358 (488)
T ss_dssp HHHHHHTTSSSCCEEETTGGGTCCCCSSHHHHTCCCCCS
T ss_pred HHHHHHHhCCCCcEEEechhcCccCCCCCCCCcCCCCCC
Confidence 999999999999999999 67766643 35678999994
|
| >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=392.18 Aligned_cols=281 Identities=17% Similarity=0.188 Sum_probs=193.4
Q ss_pred CCCCceEEEEecCCccCCCC--------------------CCCHHHHHHhhhH--HHHHcCCCcCceeEEEeeccccccc
Q psy9001 175 KPDNLKIYESHVGICTQEQK--------------------CASYEDFVRVVIP--RIVKQGMAIPDKWIELLKKFKDEDW 232 (1351)
Q Consensus 175 ~~~~~vIYE~hvr~ft~~~~--------------------~G~~~gi~~~~L~--yLk~LGvt~~~~~I~L~Pif~~~~~ 232 (1351)
.+++.+|||+|+++|+..+. .|+|+||+++ || |||+||||+ |||||||+...-
T Consensus 11 ~~~~~viYqi~~~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl~gi~~k-Ld~~yLk~LGvta----IwL~Pi~~~~~~ 85 (683)
T 3bmv_A 11 NYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINK-INDGYLTGMGVTA----IWIPQPVENIYA 85 (683)
T ss_dssp CCTTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHH-HHTSTTGGGTCCE----EEECCCEEECCC
T ss_pred CCccCcEEEEecccccCCCCCCCCCCcccCCCccccccccCcCHHHHHHh-cCHHHHHHcCCCE----EEeCccccCccc
Confidence 47899999999999964321 2999999999 99 999999999 999997752100
Q ss_pred CccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCcccccccccccc
Q psy9001 233 NMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHK 312 (1351)
Q Consensus 233 ~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~i 312 (1351)
+ .... ...+ ...+|||++.||| +++
T Consensus 86 -------~-----~~~~--g~~g--~~~~~GYd~~dy~---------------------~id------------------ 110 (683)
T 3bmv_A 86 -------V-----LPDS--TFGG--STSYHGYWARDFK---------------------RTN------------------ 110 (683)
T ss_dssp -------C-----EEET--TTEE--ECSTTSCSEEEEE---------------------EEC------------------
T ss_pred -------c-----cccc--cccC--CCCCCCcCccccc---------------------ccC------------------
Confidence 0 0000 0001 1356999999999 777
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCccc------C-CC--------CCCcCcccCCCCCCCCCC-
Q psy9001 313 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE------F-DG--------TQACFFHDGPRGTHPLWD- 376 (1351)
Q Consensus 313 d~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~------f-~g--------~~~~yy~~~~~~~~~~w~- 376 (1351)
|+||+++|||+||++||++||+||||+|+||++..+...... + ++ ..+.||+.... ..|.
T Consensus 111 -p~~Gt~~dfk~Lv~~aH~~GikVilD~V~NHts~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~---~~w~~ 186 (683)
T 3bmv_A 111 -PYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFHHYGG---TDFSS 186 (683)
T ss_dssp -TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTCCBCCSCB---CCCSS
T ss_pred -cccCCHHHHHHHHHHHHHCCCEEEEEEcccccccccccCcchhccCccccCCcccccCCCCcccccccCCC---CCcCC
Confidence 999999999999999999999999999999999876322100 0 11 11245543221 2332
Q ss_pred -----------CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHH
Q psy9001 377 -----------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIY 445 (1351)
Q Consensus 377 -----------~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f 445 (1351)
.++||++||+||++|+++++||++ +||||||||+|.+|. ..|
T Consensus 187 ~~~~~y~~~~~~pdLn~~np~Vr~~i~~~l~~Wl~-~GVDGfRlDa~~~i~--------------------------~~f 239 (683)
T 3bmv_A 187 YEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWLD-MGIDGIRLDAVKHMP--------------------------FGW 239 (683)
T ss_dssp HHHHHHSBSTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEESCGGGSC--------------------------HHH
T ss_pred cccccccCcCCCCCcccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccCC--------------------------HHH
Confidence 368999999999999999999999 999999999999882 123
Q ss_pred HHHHHHHHHhhCCCeEEEEEcC----------------------------------------------------------
Q psy9001 446 LMVANKFLHDKYPEIITIAEDV---------------------------------------------------------- 467 (1351)
Q Consensus 446 ~~~~~~~v~~~~P~~~~iaE~~---------------------------------------------------------- 467 (1351)
|+++++.+++..| +++|||.|
T Consensus 240 ~~~~~~~v~~~~~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 318 (683)
T 3bmv_A 240 QKNFMDSILSYRP-VFTFGEWFLGTNEIDVNNTYFANESGMSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTASDYNFI 318 (683)
T ss_dssp HHHHHHHHHHHSC-CEEEECCCCCTTCCCHHHHHHHHHSSSEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHHHHhcCC-ceEEccccCCCcccchhhhhhhccCCCceECchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhccch
Confidence 3333333333322 33334333
Q ss_pred ----------------------------------CCCCCcccccccCCCCCCCcCC---cCCCCCCCcHHHHHHHHHHhh
Q psy9001 468 ----------------------------------SGMPASCRPVTEGGTGFDYRLE---IRPDMSDMTVGTFDAAMNTTE 510 (1351)
Q Consensus 468 ----------------------------------~~~p~~~~~~~~gg~gfd~~~~---~~~d~~~~sl~~f~k~L~~Lr 510 (1351)
+|.|.|+++.|.|-.|..-..+ +..-.....+.+|+|+|++||
T Consensus 319 ~~~~~fl~NHD~~R~~~~~~~~~~~~a~a~llt~pG~P~IYyG~E~g~~~~~d~~~R~~~~~~~~~~~~~~~~~~Li~lR 398 (683)
T 3bmv_A 319 NDMVTFIDNHDMDRFYNGGSTRPVEQALAFTLTSRGVPAIYYGTEQYMTGNGDPYNRAMMTSFNTSTTAYNVIKKLAPLR 398 (683)
T ss_dssp GGCEECSCCSSSCCSCCSSCSHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCCTTSHHHHHHHHHTTHH
T ss_pred hhceeeccCCCCcccccCCCHHHHHHHHHHHHhCCCCCEEEeeeeecccCCCCccccccCCCccCCcHHHHHHHHHHHHH
Confidence 4555555555544222111111 100012346789999999999
Q ss_pred hcccccccCCcceEeecCCCcEEEEEeC----ceEEEEeCCCC
Q psy9001 511 ERFKWLSADPGYVSTKHEGDKVIIFERA----GLLFAFNFNGT 549 (1351)
Q Consensus 511 ~~~~~L~~g~~~~~~~~~~~~Vlaf~R~----~ll~v~Nf~~~ 549 (1351)
+++++|+.|. +..+. .++++++|.|. .++||+|+++.
T Consensus 399 k~~~al~~G~-~~~~~-~~~~v~af~R~~~~~~~lV~~N~~~~ 439 (683)
T 3bmv_A 399 KSNPAIAYGT-TQQRW-INNDVYIYERKFGNNVALVAINRNLS 439 (683)
T ss_dssp HHCHHHHHCE-EEEEE-ECSSEEEEEEEETTEEEEEEEECCSS
T ss_pred hhCHHhhcCc-EEEEe-eCCCEEEEEEEcCCeEEEEEEECCCC
Confidence 9999999884 33332 24579999995 79999999976
|
| >2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=381.87 Aligned_cols=217 Identities=18% Similarity=0.280 Sum_probs=159.7
Q ss_pred CCCCCCceEEEEecCCccC--CCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccc
Q psy9001 173 PKKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 250 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~ft~--~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~ 250 (1351)
|.++++++|||+||++|+. .+..|+|+||+++ |||||+||||+ |||||||+ +
T Consensus 3 ~~w~~~~viYqi~~~~F~d~~~dg~Gd~~gi~~~-ldyl~~lGv~~----i~l~Pi~~--------------------~- 56 (555)
T 2ze0_A 3 KTWWKEGVAYQIYPRSFMDANGDGIGDLRGIIEK-LDYLVELGVDI----VWICPIYR--------------------S- 56 (555)
T ss_dssp CCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHT-HHHHHHHTCCE----EEECCCEE--------------------C-
T ss_pred hhhhhcCcEEEEEchHhcCCCCCCcCCHHHHHHH-HHHHHHcCCCE----EEeCCccc--------------------C-
Confidence 3457899999999999964 4568999999998 99999999999 99999553 2
Q ss_pred ccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHH
Q psy9001 251 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 330 (1351)
Q Consensus 251 ~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H 330 (1351)
+ ...|||+++||+ +++ |+||+++||++||++||
T Consensus 57 -~------~~~~gY~~~dy~---------------------~id-------------------~~~Gt~~d~~~lv~~~h 89 (555)
T 2ze0_A 57 -P------NADNGYDISDYY---------------------AIM-------------------DEFGTMDDFDELLAQAH 89 (555)
T ss_dssp -C------CTTTTCSCSEEE---------------------EEC-------------------GGGCCHHHHHHHHHHHH
T ss_pred -C------CCCCCcCccccc---------------------ccC-------------------cccCCHHHHHHHHHHHH
Confidence 1 124899999999 777 99999999999999999
Q ss_pred HcCCEEEEEeeccccccCCcCCcccCCCCC---CcCccc-CC-CCCC-CC---------C----------------CCcc
Q psy9001 331 KAGLYVLLDVVHSHASKNVLDGLNEFDGTQ---ACFFHD-GP-RGTH-PL---------W----------------DSRL 379 (1351)
Q Consensus 331 ~~GI~VILDvV~NH~~~~~~~~~~~f~g~~---~~yy~~-~~-~~~~-~~---------w----------------~~~~ 379 (1351)
++||+||||+|+||++.++.+......+.. ..||.. ++ ++.. .+ | +.++
T Consensus 90 ~~Gi~vilD~V~NH~~~~~~~f~~~~~~~~~~~~~~y~~~~~~~g~~p~~~~~~f~~~~w~~~~~~~~~~~~~f~~~~pd 169 (555)
T 2ze0_A 90 RRGLKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRDGKDGREPNNWESIFGGSAWQYDERTGQYYLHIFDVKQPD 169 (555)
T ss_dssp HTTCEEEEEEECSBCCTTSHHHHHHHHCSSSTTGGGBCEECCBTTBCSSCEECTTSSBSEEEETTTTEEEECSSCTTCCB
T ss_pred HCCCEEEEEEecccccchhhHHHHhhcCCCCCccccccccCCCCCCCCCcccccCCCccceecCCCCceeecccCccCCc
Confidence 999999999999999998765422111111 123321 11 1111 11 1 1268
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCcc---ccCC-----CccCchHHHHHHHHHH
Q psy9001 380 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD---EYFG-----LNVDTDALIYLMVANK 451 (1351)
Q Consensus 380 ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~---~~~~-----~~~~~~~~~f~~~~~~ 451 (1351)
||++||+||++|+++++||++ +||||||||+|.+|... .+|..... +.++ .....+..+|++++++
T Consensus 170 Ln~~np~V~~~l~~~~~~W~~-~gvDGfRlDa~~~i~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 243 (555)
T 2ze0_A 170 LNWENSEVRQALYEMVNWWLD-KGIDGFRIDAISHIKKK-----PGLPDLPNPKGLKYVPSFAGHMNQPGIMEYLRELKE 243 (555)
T ss_dssp BCTTCHHHHHHHHHHHHHHHH-HTCCEEEEESGGGSSCC-----TTCCCCC----CCSEECHHHHSSCTTHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHH-cCCCEEEEccccccccc-----cccccCCcccccccccccccccCcHHHHHHHHHHHH
Confidence 999999999999999999997 89999999999988432 11211100 0000 0112245689999999
Q ss_pred HHHhhCCCeEEEEEcCCC
Q psy9001 452 FLHDKYPEIITIAEDVSG 469 (1351)
Q Consensus 452 ~v~~~~P~~~~iaE~~~~ 469 (1351)
.+++.. ++++|||.|..
T Consensus 244 ~v~~~~-~~~~vgE~~~~ 260 (555)
T 2ze0_A 244 QTFARY-DIMTVGEANGV 260 (555)
T ss_dssp HTGGGS-SCEEEEECTTC
T ss_pred HhhccC-CeEEEeccCCC
Confidence 887654 89999999853
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=382.87 Aligned_cols=333 Identities=16% Similarity=0.186 Sum_probs=211.4
Q ss_pred CCceEEEeecCCc-ccCCCc----cc-ccccccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCccccc
Q psy9001 889 ENLKIYESHVGIC-TQEQKC----AS-YEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNR 962 (1351)
Q Consensus 889 ~d~iIYE~HV~~~-s~~~~~----gt-y~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~ 962 (1351)
++++|||++++.| +..... |. ....-....+.-...|+|+++..++++|+++|++.++|+
T Consensus 5 ~~~viYqi~~~~F~~~gd~~~~~~g~~~~~~~~~~~~~~~~~G~~~gi~~~LdyL~~LGv~~I~l~-------------- 70 (475)
T 2z1k_A 5 EGAFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTLWGVAEKLPYLLDLGVEAIYLN-------------- 70 (475)
T ss_dssp SSCCEEEECGGGSCCCSCCCSSCCCSCCCCTTSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEEC--------------
T ss_pred cCceEEEEccCeecCCCCcccCCCccccccccCCCCccccCCCCHHHHHHHhHHHHHcCCCEEEEC--------------
Confidence 5789999999999 432211 20 000001111112236888888888888888887544443
Q ss_pred CccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHH
Q psy9001 963 EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDE 1041 (1351)
Q Consensus 963 ~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~ 1041 (1351)
|.+.++.+||| ++||++|+|+|||++|||+||++
T Consensus 71 ---------------------------------------------Pi~~~~~~~gY~~~dy~~idp~~Gt~~df~~lv~~ 105 (475)
T 2z1k_A 71 ---------------------------------------------PVFASTANHRYHTVDYFQVDPILGGNEALRHLLEV 105 (475)
T ss_dssp ---------------------------------------------CCEEESSTTCCSEEEEEEECGGGTCHHHHHHHHHH
T ss_pred ---------------------------------------------CCcCCCCCCCcCCCCcCccCcccCCHHHHHHHHHH
Confidence 11222346899 99999999999999999999999
Q ss_pred HHHcCCEEEEEeecccccCCccccCc---C-CCCCCCccccCC--CC------CCCCCCC----CCCCCCCCHHHHHHHH
Q psy9001 1042 CHKAGLYVLLDVVHSHASKNVLDGLN---E-FDGTQACFFHDG--PR------GTHPLWD----SRLFNYSEIEVLRFLL 1105 (1351)
Q Consensus 1042 aH~~GI~VILDVV~NHts~~~~~~l~---~-~dg~~~~yf~~~--~~------g~~~~w~----~~dlN~~np~Vr~~li 1105 (1351)
||++||+||||+|+|||+.+|..... . -+.....||+.. +. +.+..|. ..+||++||+||++|+
T Consensus 106 ~h~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~~~y~~~~~~~~~~~~~~~y~~~~~~~~~pdln~~np~v~~~i~ 185 (475)
T 2z1k_A 106 AHAHGVRVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWYHVKGFPLKAYTAHPNYEAWWGNPELPKLKVETPAVREYLL 185 (475)
T ss_dssp HHHTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBCSSSCCTTSSSCSBCBGGGCTTSBBBCTTSHHHHHHHH
T ss_pred HHHCCCEEEEEEecccccCCCHHHHHHHhcCCCCCCcceeecCCCCCcCCCCCCCccccCCCCCcCccccCCHHHHHHHH
Confidence 99999999999999999998732110 0 111233455422 11 1222221 2489999999999999
Q ss_pred HHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCC
Q psy9001 1106 SNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPA 1185 (1351)
Q Consensus 1106 d~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~ 1185 (1351)
++++||+ ++||||||||++.+|. . ..||+++++.+++.+|++++|||.|.....
T Consensus 186 ~~~~~w~-~~gvDGfR~D~~~~~~-----------------------~--~~~~~~~~~~~~~~~p~~~~igE~~~~~~~ 239 (475)
T 2z1k_A 186 AVAEHWI-RFGVDGWRLDVPNEIP-----------------------D--PTFWREFRQRVKGANPEAYIVGEIWEEADF 239 (475)
T ss_dssp HHHHHHH-HHTCCEEEESSGGGCC-----------------------C--HHHHHHHHHHHHHHCTTCEEEECCSSCCSG
T ss_pred HHHHHHH-HCCCCEEeecccccCC-----------------------H--HHHHHHHHHHHhhcCCCcEEEEEecCCccc
Confidence 9999999 8999999999999771 1 138999999999999999999999865432
Q ss_pred cccccccCCcccccccccccccccccccccccccCchhHhhhccCCC-----CCCCccccCCCcccccccCCcccc-cCc
Q psy9001 1186 SCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCS-----HFGGFNRLDPGTVYETYPEPWNNR-RNS 1259 (1351)
Q Consensus 1186 ~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~-----~~~gf~r~~~~~~~~~~~~~~~~r-~~s 1259 (1351)
.. .+.+||..++..++ ..+++.+.++.. ...++.....-.... +... ...
T Consensus 240 ~~-----~~~~~d~~~n~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~ 295 (475)
T 2z1k_A 240 WL-----QGDMFDAVMNYPLA--------------RAVLGFVGGEALDRDLAAQTGLGRIEPLQALA-----FSHRLEDL 295 (475)
T ss_dssp GG-----SSSSCSEEBCHHHH--------------HHHHHHHHGGGSCHHHHTTSTTCSCCCCCHHH-----HHHHHHHH
T ss_pred cc-----cCCCcCeeeChhHH--------------HHHHHHHhCCccccccccccccccccCCCHHH-----HHHHHHHH
Confidence 22 23456543332221 111222211100 000000000000000 0000 000
Q ss_pred cccccCCCCccceeeecccCCCCCcCCcccccccC--CHHHHHHHHHHHHccCCccEEEee-cccCCCCccceeeccCCc
Q psy9001 1260 IKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI--QTESNMNGFGIQTLPTQSPLYLVA-KIEKPCSTREVVKAPLPF 1336 (1351)
Q Consensus 1260 ~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~--~~~~~r~A~allltspGiP~If~g-~~~~~~~~~~~~~~p~~~ 1336 (1351)
...|. .. .....+||++|||+.|. .... ..+++|+|++++||+||+||||+| |+...+.....++.||+|
T Consensus 296 ~~~~~-~~-~~~~~~~f~~nHD~~R~-----~~~~~~~~~~~~~a~a~ll~~pG~P~iy~G~E~g~~~~~d~~~r~~~~W 368 (475)
T 2z1k_A 296 FGRYR-PE-VVRAQMNLLTSHDTPRL-----LSLMRGSVERARLALALLFLLPGNPTVYYGEEVGMAGGKDPENRGGMVW 368 (475)
T ss_dssp TTSSC-HH-HHTTCEECSCCTTSCCH-----HHHTTTCHHHHHHHHHHHTTSSSEEEEETTGGGTCCCCSTTTTCCCCCC
T ss_pred HHhcc-ch-hhhhheeeccCCchhhH-----HHhcCCcHHHHHHHHHHHHhCCCCCEEEeecccCcCCCCChhhccCCCC
Confidence 01111 00 00112899999999753 2222 357899999999999999999999 888888777789999999
Q ss_pred c
Q psy9001 1337 G 1337 (1351)
Q Consensus 1337 ~ 1337 (1351)
.
T Consensus 369 ~ 369 (475)
T 2z1k_A 369 E 369 (475)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=374.45 Aligned_cols=290 Identities=16% Similarity=0.209 Sum_probs=194.4
Q ss_pred ceEEEEecCCccC--CCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCC
Q psy9001 179 LKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 256 (1351)
Q Consensus 179 ~vIYE~hvr~ft~--~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s 256 (1351)
++|||+|||+|+. ++..|+|+||+++ |||||+||||+ |||||||+ + +
T Consensus 1 ~viYei~~~~F~~~~~~g~Gd~~gi~~~-LdyL~~LGv~~----I~L~Pi~~--------------------~--~---- 49 (441)
T 1lwj_A 1 MIGYQIYVRSFRDGNLDGVGDFRGLKNA-VSYLKELGIDF----VWLMPVFS--------------------S--I---- 49 (441)
T ss_dssp CCEEEECHHHHCCSSSSSSCCHHHHHHT-HHHHHHTTCCE----EEECCCEE--------------------C--S----
T ss_pred CeEEEEehHHhcCCCCCCccCHHHHHHh-hHHHHHcCCCE----EEeCCCcC--------------------C--C----
Confidence 5899999999974 3568999999998 99999999999 99999553 2 2
Q ss_pred CCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEE
Q psy9001 257 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 336 (1351)
Q Consensus 257 ~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~V 336 (1351)
.+|||++.||+ +++ |+|||++|||+||++||++||+|
T Consensus 50 ---~~~GY~~~dy~---------------------~id-------------------p~~Gt~~df~~lv~~aH~~Gi~V 86 (441)
T 1lwj_A 50 ---SFHGYDVVDFY---------------------SFK-------------------AEYGSEREFKEMIEAFHDSGIKV 86 (441)
T ss_dssp ---SSSCCSCSEEE---------------------EEC-------------------TTTCCHHHHHHHHHHHHHTTCEE
T ss_pred ---CCCCCCccccc---------------------ccC-------------------cccCCHHHHHHHHHHHHHCCCEE
Confidence 24999999999 777 99999999999999999999999
Q ss_pred EEEeeccccccCCcCCcccCCCCC--CcCcccCC-C---------CCCCCC---------------CCccCCCCCHHHHH
Q psy9001 337 LLDVVHSHASKNVLDGLNEFDGTQ--ACFFHDGP-R---------GTHPLW---------------DSRLFNYSEIEVLR 389 (1351)
Q Consensus 337 ILDvV~NH~~~~~~~~~~~f~g~~--~~yy~~~~-~---------~~~~~w---------------~~~~ln~~~p~v~~ 389 (1351)
|||+|+|||+.++.+......+.. ..||...+ . +....| +.++||++||+||+
T Consensus 87 ilD~V~NH~~~~~~~f~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~w~~~~~~~~y~~~f~~~~pdln~~np~V~~ 166 (441)
T 1lwj_A 87 VLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQVFD 166 (441)
T ss_dssp EEEECTTBCCTTCHHHHHHHTTCHHHHTTBCBCCTTSCTTCBCSSSCCBCEEECTTSCEEECTTCTTSCBBCSSSHHHHH
T ss_pred EEEeCCCcccCchHHHHHHhccCCCCcceeeecCCCCCCcccccCCCccccccccCCceEEcccCCCCCccCCCCHHHHH
Confidence 999999999998765321111110 12332111 0 000112 12689999999999
Q ss_pred HHHHHHHHHHHHcCCCcccccccccccccc-----------CC-----CCCCCCCCcc---ccC---CCccCchHHHHHH
Q psy9001 390 FLLSNLRWYLDEYQFDGFRFDGVTSMLYHN-----------HG-----CGEGFSGHYD---EYF---GLNVDTDALIYLM 447 (1351)
Q Consensus 390 ~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~-----------~~-----~~~~f~~~~~---~~~---~~~~~~~~~~f~~ 447 (1351)
+|+++++||+++ ||||||||+|.+|.... .. .++.+. ... .+. ....|.. +..
T Consensus 167 ~l~~~~~~wl~~-gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~igE~~~-~~~~~~~y~~~~~~~~~~~---~~~ 241 (441)
T 1lwj_A 167 EMKRLVLHLLDM-GVDGFRFDAAKHMRDTIEQNVRFWKYFLSDLKGIFLAEIWA-EARMVDEHGRIFGYMLNFD---TSH 241 (441)
T ss_dssp HHHHHHHHHHTT-TCCEEEETTGGGSSSSHHHHHHHHHHHTTTCCSEEEECCCS-CHHHHHHHHHHHSEEECHH---HHH
T ss_pred HHHHHHHHHHhC-CCCEEEEeChhhhccCCccHHHHHHHHHHHhHhhEEEccCC-CHHHHHHHHHhCCEeEehH---HHH
Confidence 999999999997 99999999999883100 00 011111 000 000 0011111 111
Q ss_pred H------------HHHHHHhh---CCCe-EEE-------------EEc--------------CCCCCCcccccccCCCCC
Q psy9001 448 V------------ANKFLHDK---YPEI-ITI-------------AED--------------VSGMPASCRPVTEGGTGF 484 (1351)
Q Consensus 448 ~------------~~~~v~~~---~P~~-~~i-------------aE~--------------~~~~p~~~~~~~~gg~gf 484 (1351)
. +.+.+... .+.. +.+ +.. .+|.|.|+++.|.|..+-
T Consensus 242 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~fl~nHD~~R~~~~~~~~~~~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~ 321 (441)
T 1lwj_A 242 CIKEAVWKENTRVLIESIERAVIAKDYLPVNFTSNHDMSRLASFEGGFSKEKIKLSISILFTLPGVPLVFYGDELGMKGV 321 (441)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHTSSCSSEEEEESCCTTSCCGGGTTTCCCHHHHHHHHHHHHTSSSEEEEETTTTTTCCCC
T ss_pred HHHHhhccCCHHHHHHHHHHHhccCCCceeeeccCCCCCCcccccCCcHHHHHHHHHHHHHhCCCceEEEchHhhCCCCC
Confidence 1 12222221 1111 111 111 268899999988874332
Q ss_pred -C------CcCC--cCCC---------------------------CCCCcHHHHHHHHHHhhhcccccccCCcceEeecC
Q psy9001 485 -D------YRLE--IRPD---------------------------MSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHE 528 (1351)
Q Consensus 485 -d------~~~~--~~~d---------------------------~~~~sl~~f~k~L~~Lr~~~~~L~~g~~~~~~~~~ 528 (1351)
+ .+-. |... ....++++|+|+|++||+++|+|+.|. +..+..+
T Consensus 322 ~~~~~~~~~R~~m~W~~~~~~g~~~~w~~~~~~~~~~~~~v~~q~~~~~~l~~~~~~L~~lR~~~~al~~g~-~~~~~~~ 400 (441)
T 1lwj_A 322 YQKPNTEVVLDPFPWNESMCVEGQTFWKWPAYNGPFSGISVEYQKRDPDSILSHTLGWTRFRKENQWIDRAK-LEFLCKE 400 (441)
T ss_dssp CCSSCGGGGSCCCCSSSSSCSTTCCCSSCCSSCCSSSSCSHHHHTTCTTSHHHHHHHHHHHHHHTGGGTTCE-EEEEEEC
T ss_pred CCCCCCccccCCcccccCCCCCCCCCCCCcccccccccCCHHHhhcCcHHHHHHHHHHHHHHhCChhhhcCc-eEEEecC
Confidence 1 1111 3211 124679999999999999999999883 4444333
Q ss_pred CCcEEEEEeC----ceEEEEeCCCC
Q psy9001 529 GDKVIIFERA----GLLFAFNFNGT 549 (1351)
Q Consensus 529 ~~~Vlaf~R~----~ll~v~Nf~~~ 549 (1351)
+.|++|.|. .++||+|+++.
T Consensus 401 -~~v~a~~R~~~~~~~lvv~N~~~~ 424 (441)
T 1lwj_A 401 -DKFLVYRLYDDQHSLKVFHNLSGE 424 (441)
T ss_dssp -SSEEEEEEEETTEEEEEEEECSSS
T ss_pred -CCEEEEEEEeCCcEEEEEEECCCC
Confidence 679999996 79999999976
|
| >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=386.94 Aligned_cols=329 Identities=17% Similarity=0.153 Sum_probs=216.8
Q ss_pred CCceEEEeecCCcccCCCc-----ccccccccccccceeccCCCcccccccccccccCCceEEEe-cCCCCCCCCccccc
Q psy9001 889 ENLKIYESHVGICTQEQKC-----ASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELV-LPPNPDGDFNNWNR 962 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~~~-----gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~-ip~~~~g~~Y~~~~ 962 (1351)
++.+|||++++.|+..... +.+ .-...-.+....-|+|.++..++++|+++|++.+.|+ |
T Consensus 105 ~~~viY~i~~drF~~gd~~nd~~~~~~-~~~~~~~~~~~~gGdl~gi~~~Ldyl~~LGv~aI~l~Pi------------- 170 (601)
T 3edf_A 105 PGDAIYQIMPDRFANGDPSNDNVAGMR-EQADRRHGGGRHGGDIRGTIDHLDYIAGLGFTQLWPTPL------------- 170 (601)
T ss_dssp TTCCEEEECHHHHCCSCGGGSSCTTCS-CCCCTTSTTSCCCCCHHHHHHTHHHHHHTTCCEEEESCC-------------
T ss_pred ccCeEEEEehHHhcCCCCCcCcCcCcc-cccCccccccccCcCHHHHHHHHHHHHHcCCCEEEECcc-------------
Confidence 5789999999999843211 111 0011011223346899999999999999987544433 2
Q ss_pred CccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHH
Q psy9001 963 EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDE 1041 (1351)
Q Consensus 963 ~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~ 1041 (1351)
+ +. ...+.++||| ++||++|||+|||.+|||+||++
T Consensus 171 ----~----------------------------------~~-----~~~~~~~~GY~~~dy~~idp~~Gt~~df~~Lv~~ 207 (601)
T 3edf_A 171 ----V----------------------------------EN-----DAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTE 207 (601)
T ss_dssp ----E----------------------------------EC-----CCSSSGGGCCSCSEEEEECTTTCCHHHHHHHHHH
T ss_pred ----c----------------------------------cC-----CCCCCCCCCcCccccccccccCCCHHHHHHHHHH
Confidence 0 00 0012357999 99999999999999999999999
Q ss_pred HHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCC----------------------CC---CCCCCCCC
Q psy9001 1042 CHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP----------------------LW---DSRLFNYS 1096 (1351)
Q Consensus 1042 aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~----------------------~w---~~~dlN~~ 1096 (1351)
||++||+||||+|+||++.+|.. +. +.....||...+..... .| +..+||++
T Consensus 208 aH~~Gi~VilD~V~NH~~~~~~~-~~--~~p~~dw~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wf~~~lpdLN~~ 284 (601)
T 3edf_A 208 ARKRGMGLIQDVVLSHIGKHHWW-MK--DLPTPDWINYGGKFVPTQHHRVAVQDPYAAQADSENFTKGWFVEGMPDLNQT 284 (601)
T ss_dssp HHHTTCEEEEEECCSBCCTTSGG-GG--SCSSTTSBGGGGSCCBCCCCGGGGGCTTCCHHHHHHHHHSBSSTTSCBBCTT
T ss_pred HHHcCCEEEEEECCcccCCcchh-hh--hCCccCceeeCCCCCCCccccccccCCCCccccccccccccccccccccccC
Confidence 99999999999999999998832 22 11222344321000000 11 23589999
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEE
Q psy9001 1097 EIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 1176 (1351)
Q Consensus 1097 np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilI 1176 (1351)
||+||++|+++++||++++||||||||++.++ ...||+++++.+++.+|++++|
T Consensus 285 np~V~~~l~~~~~~Wi~~~GVDGfRlD~~~~~--------------------------~~~f~~~~~~~v~~~~p~~~~v 338 (601)
T 3edf_A 285 NPLVANYLIQNNIWWIEYAGLSGLRIDTYGYS--------------------------DGAFLTEYTRRLMAEYPRLNMV 338 (601)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCSEEEESSGGGS--------------------------CHHHHHHHHHHHHHHCTTCEEE
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEeeccccC--------------------------CHHHHHHHHHHHHHhCCCeEEE
Confidence 99999999999999999999999999999977 4578999999999999999999
Q ss_pred EccCCCCCCcccccccCCc---ccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCc
Q psy9001 1177 AEDVSGMPASCRPVTEGGT---GFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPW 1253 (1351)
Q Consensus 1177 aE~~~~~p~~~~p~~~gg~---GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~ 1253 (1351)
||.|.+.+..+..+..+.. +|+..+.. +++|+.. ..+++++.+. ....+..++...+.
T Consensus 339 gE~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----v~nf~~~-----~~l~~~~~~~-~~~~~~~~l~~~~~-------- 399 (601)
T 3edf_A 339 GQEWSTRVPVVARWQRGKANFDGYTSHLPS-----LMDFPLV-----DAMRNALSKT-GEENGLNEVYETLS-------- 399 (601)
T ss_dssp ECCCCSCHHHHHTTSTTCCCTTCCCCCCCE-----EBCHHHH-----HHHHHHHHCT-TSSSTTHHHHHHHG--------
T ss_pred eeecCCchHHHhhhhccccccccccccCCe-----EEChHHH-----HHHHHHHhcc-chhhHHHHHHHHHh--------
Confidence 9999877776666654431 22211111 1222221 2334444221 00011111100000
Q ss_pred ccccCcccccc-CCCCccceeeecccCCCCCcCCccccccc-CCHHHHHHHHHHHHccCCccEEEee-cccCCC----Cc
Q psy9001 1254 NNRRNSIKLYL-PTRTGIIDEVNLLNNVREERNNENNMKRY-IQTESNMNGFGIQTLPTQSPLYLVA-KIEKPC----ST 1326 (1351)
Q Consensus 1254 ~~r~~s~~~y~-p~~~~~~~~vnfv~nHD~~rn~~~r~~~~-~~~~~~r~A~allltspGiP~If~g-~~~~~~----~~ 1326 (1351)
....|. +.. .++|++|||+.|... .. ...+++|+|++++||+||+||||+| |+...+ ..
T Consensus 400 -----~~~~~~~~~~-----~~~fl~NHD~~R~~s----~~~~~~~~~k~a~alllt~pG~P~IYyG~E~G~~~~~~~~~ 465 (601)
T 3edf_A 400 -----LDYLYPEPQN-----LVLFGGNHDMARMFS----AAGEDFDRWRMNLVFLMTMPRIPQFYSGDEILMTSTVKGRD 465 (601)
T ss_dssp -----GGGGSSCGGG-----SEEESCCTTSCCHHH----HTTTCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCCSSCC
T ss_pred -----hhcccCCccc-----eEEeeccCCCCCchh----hcCCCHHHHHHHHHHHHhcCCCcEEEeehcccccCCCCCCC
Confidence 000111 222 289999999976411 12 2457899999999999999999999 777776 55
Q ss_pred cceeeccCCc
Q psy9001 1327 REVVKAPLPF 1336 (1351)
Q Consensus 1327 ~~~~~~p~~~ 1336 (1351)
...+|.+|||
T Consensus 466 d~~~R~~~p~ 475 (601)
T 3edf_A 466 DASYRRDFPG 475 (601)
T ss_dssp GGGGCCCCTT
T ss_pred ChhhhhcCcc
Confidence 6778998883
|
| >2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=364.28 Aligned_cols=251 Identities=14% Similarity=0.145 Sum_probs=183.3
Q ss_pred ccCCCCC--CCCCCceEEEEe-cCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccc
Q psy9001 167 KWTSSKP--KKPDNLKIYESH-VGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTN 243 (1351)
Q Consensus 167 ~w~~~~p--~~~~~~vIYE~h-vr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~ 243 (1351)
.|....| .++++++|||+| +|+|+ +...|+|+||+++ |||||+||||+ |||||||+
T Consensus 2 ~~~~~~~~~~ww~~~viYqi~~~~sf~-gdg~Gdl~gi~~~-Ldyl~~LGv~~----i~l~Pi~~--------------- 60 (424)
T 2dh2_A 2 RWGSELPAQKWWHTGALYRIGDLQAFQ-GHGAGNLAGLKGR-LDYLSSLKVKG----LVLGPIHK--------------- 60 (424)
T ss_dssp --CCSCCCCCGGGSSCEEEECCHHHHH-CTTCCSHHHHHTT-HHHHHHTTCSE----EEECCCEE---------------
T ss_pred CCCCCCCcccccccCeEEEEcCccccC-CCCCCCHHHHHHH-HHHHHHcCCCE----EEECCCCC---------------
Confidence 3555544 368999999999 99998 4568999999998 99999999999 99999553
Q ss_pred cccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHH
Q psy9001 244 RRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLK 323 (1351)
Q Consensus 244 ~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk 323 (1351)
+ + + .||+++||+ +++ |+|||++||+
T Consensus 61 -----~--~---~-----~~y~~~dy~---------------------~id-------------------p~~Gt~~d~~ 85 (424)
T 2dh2_A 61 -----N--Q---K-----DDVAQTDLL---------------------QID-------------------PNFGSKEDFD 85 (424)
T ss_dssp -----E--C---T-----TCSTTEEEE---------------------EEC-------------------GGGCCHHHHH
T ss_pred -----C--C---C-----CCCCccccc---------------------ccC-------------------ccCCCHHHHH
Confidence 2 2 1 468888888 666 9999999999
Q ss_pred HHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcC
Q psy9001 324 YLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQ 403 (1351)
Q Consensus 324 ~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~ 403 (1351)
+||++||++||+||||+|+||++ .+. ||. ..+|+||++|+++++||++ +|
T Consensus 86 ~lv~~ah~~Gi~vilD~V~NH~s-~~~------------wF~----------------~q~~~Vr~~~~~~~~~Wl~-~g 135 (424)
T 2dh2_A 86 SLLQSAKKKSIRVILDLTPNYRG-ENS------------WFS----------------TQVDTVATKVKDALEFWLQ-AG 135 (424)
T ss_dssp HHHHHHHHTTCEEEEECCTTTTS-SST------------TCS----------------SCHHHHHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHCCCEEEEEECCCcCC-Ccc------------ccc----------------ccCHHHHHHHHHHHHHHHH-cC
Confidence 99999999999999999999999 433 231 1358999999999999998 99
Q ss_pred CCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEc-----------------
Q psy9001 404 FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAED----------------- 466 (1351)
Q Consensus 404 vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~----------------- 466 (1351)
|||||+|++..+... ..||+++++.+++..|+.++|+|+
T Consensus 136 vDGfRlD~v~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~i~~e~~~~~~~~~~~~~~~~~ 191 (424)
T 2dh2_A 136 VDGFQVRDIENLKDA------------------------SSFLAEWQNITKGFSEDRLLIAGTNSSDLQQILSLLESNKD 191 (424)
T ss_dssp CCEEEECCGGGSTTH------------------------HHHHHHHHHHHHHHCTTCEEEEECSCCCHHHHHHHTTTCTT
T ss_pred CCEEEEeccccCCcc------------------------HHHHHHHHHHHHHhCCCcEEEEEEecCCHHHHHHHhccccc
Confidence 999999999876321 012222222222222221111111
Q ss_pred --------------------------------------------------------------CCCCCCcccccccCCCCC
Q psy9001 467 --------------------------------------------------------------VSGMPASCRPVTEGGTGF 484 (1351)
Q Consensus 467 --------------------------------------------------------------~~~~p~~~~~~~~gg~gf 484 (1351)
.+|.|.|+++.|.|-.+.
T Consensus 192 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~r~~s~~~~~~~~k~~~~lllt~pG~P~iY~GeE~G~~~~ 271 (424)
T 2dh2_A 192 LLLTSSYLSDSGSTGEHTKSLVTQYLNATGNRWCSWSLSQARLLTSFLPAQLLRLYQLMLFTLPGTPVFSYGDEIGLDAA 271 (424)
T ss_dssp CEEECSTTTTCSSCHHHHHHHHHHHHHHHTTCCCEECSCSSCCGGGTSCHHHHHHHHHHHTTSSSEEEEETTGGGTCCGG
T ss_pred cccchhhhcCCCCCHHHHHHHHHHHHHhhccCceeeeecCcchhhhcCCHHHHHHHHHHHHHCCCCeEEEeceecCCcCC
Confidence 256777777777763332
Q ss_pred C------CcC--CcCCCC-------------------CCCcHHHHHHHHHHhhhcccccccCCcceEeecCCCcEEEEEe
Q psy9001 485 D------YRL--EIRPDM-------------------SDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFER 537 (1351)
Q Consensus 485 d------~~~--~~~~d~-------------------~~~sl~~f~k~L~~Lr~~~~~L~~g~~~~~~~~~~~~Vlaf~R 537 (1351)
. .+- .|.... ...++++|+|+|++||+++++|+.|. +..+. .+++|++|.|
T Consensus 272 ~~~~~~~~r~~m~W~~~~~~~~w~~~~~~~nv~~q~~~~~s~~~~yr~Li~lRk~~~~l~~G~-~~~~~-~~~~v~a~~R 349 (424)
T 2dh2_A 272 ALPGQPMEAPVMLWDESSFPDIPGAVSANMTVKGQSEDPGSLLSLFRRLSDQRSKERSLLHGD-FHAFS-AGPGLFSYIR 349 (424)
T ss_dssp GSSSCCSSSCCCCSSTTSCTTSTTCCCGGGSHHHHHTCTTSHHHHHHHHHHHHHHCHHHHHCE-EEEEB-CCTTEEEEEE
T ss_pred CCCCCcccCCCCCCCccCCCCCCcccccccCHHhhhcCcHHHHHHHHHHHHHHhcChhhhcCc-eEEEe-cCCCEEEEEE
Confidence 1 111 132211 24679999999999999999999884 44433 4678999999
Q ss_pred C-----ceEEEEeCCCC
Q psy9001 538 A-----GLLFAFNFNGT 549 (1351)
Q Consensus 538 ~-----~ll~v~Nf~~~ 549 (1351)
. .++||+||++.
T Consensus 350 ~~~~~~~~lvv~N~s~~ 366 (424)
T 2dh2_A 350 HWDQNERFLVVLNFGDV 366 (424)
T ss_dssp ECTTSCEEEEEEECSSS
T ss_pred EcCCCCEEEEEEECCCC
Confidence 4 69999999987
|
| >4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=386.48 Aligned_cols=311 Identities=17% Similarity=0.096 Sum_probs=195.3
Q ss_pred CCceEEEeecCCcccCCC-cccccccccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccce
Q psy9001 889 ENLKIYESHVGICTQEQK-CASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAY 967 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~~-~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y 967 (1351)
+++||||+|++.|..... .|.-.. ..-..-|||.++..+++||++||++.++|+
T Consensus 205 ~~aViYqI~p~~F~~~~~~~g~~~~------~~~~~gGdl~Gi~~kLdYLk~LGvt~I~L~------------------- 259 (645)
T 4aef_A 205 IDRVFYQIMPDKFARSRKIQGIAYP------KDKYWGGDLIGIKEKIDHLVNLGINAIYLT------------------- 259 (645)
T ss_dssp GGCCEEEECHHHHCCCSSCC---------------CCCCHHHHHHTHHHHHHHTCCEEEEC-------------------
T ss_pred cCCEEEEEecchhcCCCCCCcccCC------cCcCCCcCHHHHHHhhHHHHHcCCCEEEEC-------------------
Confidence 688999999999974321 111000 001123788888888888888876544433
Q ss_pred ecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcC
Q psy9001 968 KKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 1046 (1351)
Q Consensus 968 ~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~G 1046 (1351)
|+|.++++||| ++||++|+|+|||++|||+||++||++|
T Consensus 260 ----------------------------------------Pif~s~~~~GYd~~dy~~idp~~Gt~~df~~LV~~aH~~G 299 (645)
T 4aef_A 260 ----------------------------------------PIFSSLTYHGYDIVDYFHVARRLGGDRAFVDLLSELKRFD 299 (645)
T ss_dssp ----------------------------------------CCEEESSTTCSSEEEEEEECGGGTCHHHHHHHHHHHHHTT
T ss_pred ----------------------------------------CCCCCCCCCCcCccCCCccCcccCCHHHHHHHHHHhhhcC
Confidence 22334568999 9999999999999999999999999999
Q ss_pred CEEEEEeecccccCCcccc---CcCC-CCCCCccccCCC-CCCC----------CCC---------------------CC
Q psy9001 1047 LYVLLDVVHSHASKNVLDG---LNEF-DGTQACFFHDGP-RGTH----------PLW---------------------DS 1090 (1351)
Q Consensus 1047 I~VILDVV~NHts~~~~~~---l~~~-dg~~~~yf~~~~-~g~~----------~~w---------------------~~ 1090 (1351)
|+||||+|+||||..|... .... ++....||.... .... +.| ..
T Consensus 300 I~VIlD~V~NHts~~h~wf~~~~~~~~~s~~~d~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~ 379 (645)
T 4aef_A 300 IKVILDGVFHHTSFFHPYFQDVVRKGENSSFKNFYRIIKFPVVSKEFLQILHSKSSWEEKYKKIKSLGWNYESFFSVWIM 379 (645)
T ss_dssp CEEEEEECCSBCCTTSHHHHHHHHHSTTCTTGGGBCBSSSSCSCTTHHHHHHHSCGGGTTHHHHHHHCCSBCEETTEEEE
T ss_pred CEEEEEecccccccCCchhhhHhhcCCCCCcccccEeccCCCcccccccccCCCcccccccccccccccccccccccccC
Confidence 9999999999999987322 1111 112223443211 0000 011 12
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhC
Q psy9001 1091 RLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY 1170 (1351)
Q Consensus 1091 ~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~ 1170 (1351)
.+||++||+||++|+++++||++ +||||||+|++.++ ...||+.+++.+ .
T Consensus 380 pdLn~~np~V~~~~~~~~~~Wl~-~gvDGfR~D~a~~i--------------------------~~~f~~~~~~~~---~ 429 (645)
T 4aef_A 380 PRLNHDNPKVREFIKNVILFWTN-KGVDGFRMDVAHGV--------------------------PPEVWKEVREAL---P 429 (645)
T ss_dssp EBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGS--------------------------CHHHHHHHHHHS---C
T ss_pred ccccccCHHHHHHHHHHHHHHHh-cCCCEEEecccccc--------------------------chhHHHHHHhhh---h
Confidence 37999999999999999999997 59999999999977 345777777654 5
Q ss_pred CCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCccccccc
Q psy9001 1171 PEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYP 1250 (1351)
Q Consensus 1171 Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~ 1250 (1351)
+...++||.|...... . +..++. .++..+.+.+.. +............
T Consensus 430 ~~~~~~gE~~~~~~~~----~--~~~~~~------------------~~n~~~~~~~~~-------~~~~~~~~~~~~~- 477 (645)
T 4aef_A 430 KEKYLIGEVMDDARLW----L--FDKFHG------------------VMNYRLYDAILR-------FFGYEEITAEEFL- 477 (645)
T ss_dssp TTCEEEECCCSCCGGG----T--TTTCSE------------------EBCHHHHHHHHH-------HTTSCCSCHHHHH-
T ss_pred ccccccccccccchhh----h--ccccce------------------ecchhHHHHHHH-------hhhccccchHHHH-
Confidence 6789999987543211 1 111221 111222222200 0000000000000
Q ss_pred CCcccccCccc-cccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccCCccEEEee-cccCCCCc--
Q psy9001 1251 EPWNNRRNSIK-LYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCST-- 1326 (1351)
Q Consensus 1251 ~~~~~r~~s~~-~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~~~~-- 1326 (1351)
....... .+.+.. ...+||++|||+.|. .......+++++|++++||+||+|||||| |+...+.+
T Consensus 478 ----~~~~~~~~~~~~~~---~~~~~fl~nHD~~R~----~s~~gd~~~~~~a~a~llt~pG~P~iyyGdE~G~~~~~~~ 546 (645)
T 4aef_A 478 ----NELELLSSYYGPAE---YLMYNFLDNHDVERF----LDIVGDKRKYVCALVFLMTYKGIPSLFYGDEIGLRGINLQ 546 (645)
T ss_dssp ----HHHHHHHHHHGGGG---GGCBCCSCCTTSCCH----HHHHCCHHHHHHHHHHHHHSSSBCEEETTGGGTCCCEEET
T ss_pred ----HHHHHHhhhccccc---cccccccCCCCCccc----ccccCCHHHHHHHHHHHHHcCCCcEEECChhhCCCCCCCC
Confidence 0000000 011111 111789999998753 12233467899999999999999999999 67776644
Q ss_pred -cceeeccCCcc
Q psy9001 1327 -REVVKAPLPFG 1337 (1351)
Q Consensus 1327 -~~~~~~p~~~~ 1337 (1351)
+..+|.||+|+
T Consensus 547 ~~~~~R~pm~W~ 558 (645)
T 4aef_A 547 GMESSRAPMLWN 558 (645)
T ss_dssp TEEESCCCCCCC
T ss_pred CCccccCCCCCC
Confidence 56889999997
|
| >1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=367.08 Aligned_cols=205 Identities=19% Similarity=0.220 Sum_probs=156.6
Q ss_pred CCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccC
Q psy9001 176 PDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 255 (1351)
Q Consensus 176 ~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~ 255 (1351)
..+.+|||++.+.+.++ .|+|++|+++ |||||+||||+ |||||||+ . +..
T Consensus 4 ~~~~vi~q~f~w~~~~~--gG~~~gi~~~-LdyL~~LGvt~----IwL~Pi~~--------------------~--~~~- 53 (485)
T 1wpc_A 4 GTNGTMMQYFEWYLPND--GNHWNRLNSD-ASNLKSKGITA----VWIPPAWK--------------------G--ASQ- 53 (485)
T ss_dssp -CCCCEEECCCTTCCSS--SCHHHHHHHH-HHHHHHHTCCE----EEECCCSE--------------------E--SST-
T ss_pred CCCceEEEEEecCCCCC--CCcHHHHHHH-HHHHHHcCCCE----EEeCCccc--------------------C--CCC-
Confidence 35789999999998753 5999999998 99999999999 99999553 2 111
Q ss_pred CCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9001 256 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 335 (1351)
Q Consensus 256 s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~ 335 (1351)
.+|||++.|||++. +.+++| .|||+|||++|||+||++||++||+
T Consensus 54 ----~~~GY~~~dy~~~~-~~~q~~------------------------------~idp~~Gt~~df~~Lv~~aH~~Gi~ 98 (485)
T 1wpc_A 54 ----NDVGYGAYDLYDLG-EFNQKG------------------------------TVRTKYGTRSQLQAAVTSLKNNGIQ 98 (485)
T ss_dssp ----TCCSCSEEETTCSS-CSCBTT------------------------------BSSCSSCCHHHHHHHHHHHHHTTCE
T ss_pred ----CCCCCCeecccccc-cccccC------------------------------ccCCCCCCHHHHHHHHHHHHHCCCE
Confidence 35999999999221 111111 2569999999999999999999999
Q ss_pred EEEEeecccccc--CCcCCc------------------------ccCCCCCCc-------CcccC------CC-------
Q psy9001 336 VLLDVVHSHASK--NVLDGL------------------------NEFDGTQAC-------FFHDG------PR------- 369 (1351)
Q Consensus 336 VILDvV~NH~~~--~~~~~~------------------------~~f~g~~~~-------yy~~~------~~------- 369 (1351)
||||+|+||++. .++|.. ..|.|..+. ||+.. +.
T Consensus 99 VilD~V~NH~~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~ 178 (485)
T 1wpc_A 99 VYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIY 178 (485)
T ss_dssp EEEEECCSEECSCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEEESCCTTTCCSSCEE
T ss_pred EEEEEeccccCCCCcCcceeEEeeCccccccccccccccccccccCCCCCCCccccCccccccCCCCCccccccccccee
Confidence 999999999974 222211 123443322 22210 00
Q ss_pred ---CCCCCCCC--------------ccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccc
Q psy9001 370 ---GTHPLWDS--------------RLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 432 (1351)
Q Consensus 370 ---~~~~~w~~--------------~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~ 432 (1351)
+....|.+ ++||++||+||++|+++++||++++||||||||+|.+|
T Consensus 179 ~~~g~~~~W~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i----------------- 241 (485)
T 1wpc_A 179 KFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHI----------------- 241 (485)
T ss_dssp EECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGGS-----------------
T ss_pred eecCCCCCcccccccccCCccccccCccccCCHHHHHHHHHHHHHHHHhCCCCEEEhHhhhcC-----------------
Confidence 11345542 68999999999999999999999999999999999988
Q ss_pred cCCCccCchHHHHHHHHHHHHHh-hCCCeEEEEEcCCCCC
Q psy9001 433 YFGLNVDTDALIYLMVANKFLHD-KYPEIITIAEDVSGMP 471 (1351)
Q Consensus 433 ~~~~~~~~~~~~f~~~~~~~v~~-~~P~~~~iaE~~~~~p 471 (1351)
..+||+.+++++++ ..|++++|||.|.+.+
T Consensus 242 ---------~~~f~~~~~~~~~~~~~~~~~~igE~~~~~~ 272 (485)
T 1wpc_A 242 ---------KYSFTRDWINHVRSATGKNMFAVAEFWKNDL 272 (485)
T ss_dssp ---------CHHHHHHHHHHHHHHHTCCCEEEECCCCSCH
T ss_pred ---------CHHHHHHHHHHHHHhcCCCcEEEEEeccCCh
Confidence 23589999999988 7899999999997654
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=380.18 Aligned_cols=332 Identities=16% Similarity=0.168 Sum_probs=203.6
Q ss_pred CCceEEEeecCCc-ccCCC----ccccccccccc--cccee--ccCCCcccccccccccccCCceEEEecCCCCCCCCcc
Q psy9001 889 ENLKIYESHVGIC-TQEQK----CASYEDFVRVV--IPRIV--KQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNN 959 (1351)
Q Consensus 889 ~d~iIYE~HV~~~-s~~~~----~gty~~f~~~~--lp~ik--~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~ 959 (1351)
++++|||++++.| +.... .|.. ....| .|... ..|+|+++..++++|+++|++.+.|+
T Consensus 10 ~~~viYqi~~~~F~~~gd~~~d~~~~~--~~~~w~~~~~~~~~~~Gdl~gi~~~LdyL~~LGv~~I~L~----------- 76 (488)
T 2wc7_A 10 KHAVFYQIFPDRFARSKQPRKRLLQEA--RWEDWDSMPTLQGYKGGDLWGIMEDLDYIQNLGINAIYFT----------- 76 (488)
T ss_dssp HTCCEEEECGGGTCCCSSCCCCSCTTC--CGGGGGGCHHHHC-CCCCHHHHHHTHHHHHHHTCCEEEES-----------
T ss_pred ccceEEEEccccccCCCCccCCccccc--ccccccCCCccCccCCcCHHHHHHhhHHHHHcCCCEEEEC-----------
Confidence 6899999999999 43211 1210 00111 11111 26889999899999998887544433
Q ss_pred cccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHH
Q psy9001 960 WNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYL 1038 (1351)
Q Consensus 960 ~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~L 1038 (1351)
|.+.++.+||| ++|||+|||+|||++|||+|
T Consensus 77 ------------------------------------------------Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~L 108 (488)
T 2wc7_A 77 ------------------------------------------------PIFQSASNHRYHTHDYYQVDPMLGGNEAFKEL 108 (488)
T ss_dssp ------------------------------------------------CCEEECTTCTTSEEEEEEECGGGTHHHHHHHH
T ss_pred ------------------------------------------------CCCCCCCCCCCCCcCccccCcccCCHHHHHHH
Confidence 11223456899 99999999999999999999
Q ss_pred HHHHHHcCCEEEEEeecccccCCccccCc----CCCCCCCccccCCC--C--------CCCCCCC----CCCCCCCCHHH
Q psy9001 1039 VDECHKAGLYVLLDVVHSHASKNVLDGLN----EFDGTQACFFHDGP--R--------GTHPLWD----SRLFNYSEIEV 1100 (1351)
Q Consensus 1039 V~~aH~~GI~VILDVV~NHts~~~~~~l~----~~dg~~~~yf~~~~--~--------g~~~~w~----~~dlN~~np~V 1100 (1351)
|++||++||+||||+|+|||+.+|..... .-++....||.... . .....|. ..+||++||+|
T Consensus 109 v~~aH~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~s~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~np~v 188 (488)
T 2wc7_A 109 LDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPWVNWFKIEGWPLSPYNGEFPANYVGWAGNRALPEFNHDNPEV 188 (488)
T ss_dssp HHHHHHTTCEEEEEECCSBCCSSSHHHHHHHHHGGGCTTGGGBCBCSSSCCSSCTTSCCCBCBGGGCTTSBBBCTTSHHH
T ss_pred HHHHHHCCCEEEEEeCCCcCCCcCHHHHHHHhcCCCCCCCCceeecCCCCCCCCCCCCCCccccCCCCCcCeeccCCHHH
Confidence 99999999999999999999998732110 01122334554221 1 1112221 25899999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccC
Q psy9001 1101 LRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV 1180 (1351)
Q Consensus 1101 r~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~ 1180 (1351)
|++|+++++||+ ++||||||||++.++. . ..||+++++.+++.+|++++|||.|
T Consensus 189 r~~i~~~~~~Wl-~~gvDGfR~D~~~~i~-----------------------~--~~~~~~~~~~~~~~~p~~~~vgE~~ 242 (488)
T 2wc7_A 189 REYIMEIAEYWL-KFGIDGWRLDVPFEIK-----------------------T--PGFWQEFRDRTKAINPEAYIVGEVW 242 (488)
T ss_dssp HHHHHHHHHHHH-HHTCCEEEESSGGGCC-----------------------C--TTHHHHHHHHHHHHCTTCEEEECCC
T ss_pred HHHHHHHHHHHH-HCCCCEEEEecccccC-----------------------h--HHHHHHHHHHHHhhCCCeEEEEEec
Confidence 999999999999 7999999999999871 1 0388999999999999999999998
Q ss_pred CCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcc-c-ccccCCccccc-
Q psy9001 1181 SGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTV-Y-ETYPEPWNNRR- 1257 (1351)
Q Consensus 1181 ~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~-~-~~~~~~~~~r~- 1257 (1351)
..... +. .+.+||..++..++. .+++.+.++. ..+++.+.. .+. . ......+....
T Consensus 243 ~~~~~----~~-~~~~~d~~~~~~~~~--------------~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 301 (488)
T 2wc7_A 243 GDSRQ----WL-DGTQFDGVMNYLFAG--------------PTIAFAAGDR-VVLEQVQSR-DYQPYPPLFAAEYATKIQ 301 (488)
T ss_dssp SCCGG----GC-SSSSCSEEEEHHHHH--------------HHHHHHTGGG-CCGGGCCTT-TCCCCSCCCHHHHHHHHH
T ss_pred CCcHH----hh-cCCCcCceeCchHHH--------------HHHHHHhcCc-ccccccccc-ccccccCCCHHHHHHHHH
Confidence 54321 11 133455332221111 1122221110 000000000 000 0 00000000000
Q ss_pred CccccccCCCCccceeeecccCCCCCcCCcccccccC--CHHHHHHHHHHHHccCCccEEEee-cccCCCCccceeeccC
Q psy9001 1258 NSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI--QTESNMNGFGIQTLPTQSPLYLVA-KIEKPCSTREVVKAPL 1334 (1351)
Q Consensus 1258 ~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~--~~~~~r~A~allltspGiP~If~g-~~~~~~~~~~~~~~p~ 1334 (1351)
.....+ |... ....+||++|||+.|. .... ..+++|+|++++||+||+||||+| |+...+.....+|.||
T Consensus 302 ~~~~~~-~~~~-~~~~~~f~~nHD~~R~-----~~~~~~~~~~~~~a~~~ll~~pG~P~iy~G~E~g~~~~~d~~~r~~~ 374 (488)
T 2wc7_A 302 EVLQLY-PWEI-QLTQLNLLASHDTARL-----MTIAGGDIASVELSTLLLLTFPGAPSIYYGDEVGLPGGIDPDSRRGF 374 (488)
T ss_dssp HHHTSS-CHHH-HTTCEECSCCTTSCCH-----HHHTTTCHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCC----CCC
T ss_pred HHHHhc-cchh-hcceeEeccccchhhH-----HHhcCCcHHHHHHHHHHHHhCCCCcEEEEeeccCcCCCCCchhhcCC
Confidence 000011 1000 0112899999999753 2222 347899999999999999999999 7888777667788888
Q ss_pred C
Q psy9001 1335 P 1335 (1351)
Q Consensus 1335 ~ 1335 (1351)
+
T Consensus 375 ~ 375 (488)
T 2wc7_A 375 P 375 (488)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=367.80 Aligned_cols=206 Identities=20% Similarity=0.252 Sum_probs=155.1
Q ss_pred CCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccC
Q psy9001 176 PDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 255 (1351)
Q Consensus 176 ~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~ 255 (1351)
..+.+|||++...+.++ .|+|++|+++ |||||+||||+ |||||||+ . +..
T Consensus 3 ~~~~v~~q~F~W~~~~~--gG~~~gi~~~-LdyLk~LGvt~----IwL~Pi~~--------------------~--~~~- 52 (515)
T 1hvx_A 3 PFNGTMMQYFEWYLPDD--GTLWTKVANE-ANNLSSLGITA----LWLPPAYK--------------------G--TSR- 52 (515)
T ss_dssp CCCCCEEECCCTTCCSS--SCHHHHHHHH-HHHHHHTTCCE----EEECCCSE--------------------E--SST-
T ss_pred CCCceEEEEEEccCCCC--CCcHHHHHHH-HHHHHhcCCCE----EEeCCccc--------------------C--CCC-
Confidence 35679999988777653 5999999998 99999999999 99999553 2 111
Q ss_pred CCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9001 256 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 335 (1351)
Q Consensus 256 s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~ 335 (1351)
.+|||++.|||+++ +.+++| .|||+||+++|||+||++||++||+
T Consensus 53 ----~~~GY~~~dy~~l~-~f~~~~------------------------------~idp~~Gt~~dfk~Lv~~aH~~Gi~ 97 (515)
T 1hvx_A 53 ----SDVGYGVYDLYDLG-EFNQKG------------------------------AVRTKYGTKAQYLQAIQAAHAAGMQ 97 (515)
T ss_dssp ----TCCSSSEEETTCSS-CSCBTT------------------------------BSSCSSCCHHHHHHHHHHHHHTTCE
T ss_pred ----CCCCcCeecccccc-cccccC------------------------------ccCCCCCCHHHHHHHHHHHHHCCCE
Confidence 35999999999321 111111 2569999999999999999999999
Q ss_pred EEEEeecccccc--CCcCCc------------------------ccCCCCCCcC-------cccC------C--------
Q psy9001 336 VLLDVVHSHASK--NVLDGL------------------------NEFDGTQACF-------FHDG------P-------- 368 (1351)
Q Consensus 336 VILDvV~NH~~~--~~~~~~------------------------~~f~g~~~~y-------y~~~------~-------- 368 (1351)
||||+|+||++. .+.+.. ..|.|..+.| |+.. +
T Consensus 98 VilD~V~NH~~~~d~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~pg~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~ 177 (515)
T 1hvx_A 98 VYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYK 177 (515)
T ss_dssp EEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEEEEEETTTTEEEEEE
T ss_pred EEEEEecCCccCCCcccceeEEEecCcccccccccccccccccccccCCCCCccccCcccccccCCCCcccccccccccc
Confidence 999999999974 222211 1133332211 2110 0
Q ss_pred -CCCCCCCCC--------------ccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCcccc
Q psy9001 369 -RGTHPLWDS--------------RLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 433 (1351)
Q Consensus 369 -~~~~~~w~~--------------~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~ 433 (1351)
.+....|.+ ++||++||+||++|+++++||++++||||||+|+|.+|.
T Consensus 178 ~~g~~~~W~~~~~~~~~~~~~~~~~dLn~~np~V~~~l~~~~~~w~~~~gvDGfRlDaa~~i~----------------- 240 (515)
T 1hvx_A 178 FRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIK----------------- 240 (515)
T ss_dssp ECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSC-----------------
T ss_pred ccCCCCCcccccccccCccccccCCccCCCCHHHHHHHHHHHHHHHHhcCCCEEEEehhhhcC-----------------
Confidence 011344542 689999999999999999999999999999999999881
Q ss_pred CCCccCchHHHHHHHHHHHHHh-hCCCeEEEEEcCCCCCC
Q psy9001 434 FGLNVDTDALIYLMVANKFLHD-KYPEIITIAEDVSGMPA 472 (1351)
Q Consensus 434 ~~~~~~~~~~~f~~~~~~~v~~-~~P~~~~iaE~~~~~p~ 472 (1351)
.+||+.+++.+++ ..|++++|||.|.+.+.
T Consensus 241 ---------~~f~~~~~~~v~~~~~~~~~~igE~~~~~~~ 271 (515)
T 1hvx_A 241 ---------FSFFPDWLSYVRSQTGKPLFTVGEYWSYDIN 271 (515)
T ss_dssp ---------TTHHHHHHHHHHHHHCCCCEEEECCCCSCHH
T ss_pred ---------HHHHHHHHHHHHhhcCCCcEEEEEecCCChH
Confidence 2488999999988 68999999999987554
|
| >3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=378.70 Aligned_cols=286 Identities=15% Similarity=0.112 Sum_probs=200.6
Q ss_pred CCCceEEEEecCCccCC-CCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccccccc
Q psy9001 176 PDNLKIYESHVGICTQE-QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 254 (1351)
Q Consensus 176 ~~~~vIYE~hvr~ft~~-~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~ 254 (1351)
....+|||+|+|+|+.. ...|+|++++++ |||||+||||+ |||||||+... ..+.... ....
T Consensus 229 ~~~~~iYEi~~rsf~~~~~~~Gd~~gi~~~-LdyLk~LGvt~----I~L~Pi~~~~~-----------~~~~g~~-n~~~ 291 (695)
T 3zss_A 229 ALYGAWYEFFPRSEGTPHTPHGTFRTAARR-LPAIAAMGFDV----VYLPPIHPIGT-----------THRKGRN-NTLS 291 (695)
T ss_dssp HHCEEEEECCGGGSCCSSCCSCCHHHHGGG-HHHHHHTTCCE----EEECCCSCBCC-----------TTCCCGG-GCSS
T ss_pred cccceEEEEehhHhcCCCCCCCCHHHHHHH-HHHHHhCCCCE----EEECCcccCCc-----------ccccccc-cccc
Confidence 35679999999999742 338999999998 99999999999 99999775210 0000000 0000
Q ss_pred CCCCccccC--cccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHc
Q psy9001 255 ESHDQALVG--DKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 332 (1351)
Q Consensus 255 ~s~~~~~wG--Y~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~ 332 (1351)
....++| |++.+ . ..+|+.|||+||+.+|||+||++||++
T Consensus 292 --~~~~d~GspY~i~d-----------------------~-------------~~~y~~idp~~Gt~edfk~LV~~aH~~ 333 (695)
T 3zss_A 292 --ATGDDVGVPWAIGS-----------------------P-------------EGGHDSIHPALGTLDDFDHFVTEAGKL 333 (695)
T ss_dssp --CCTTCCCCTTSBCB-----------------------T-------------TBCTTSCCTTTCCHHHHHHHHHHHHHT
T ss_pred --ccccCCCCcccccC-----------------------C-------------CCCccccCcccCCHHHHHHHHHHHHHC
Confidence 0011233 33333 0 112445559999999999999999999
Q ss_pred CCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCC-------CCCC-CccCCCCC--HHHHHHHHHHHHHHHHHc
Q psy9001 333 GLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH-------PLWD-SRLFNYSE--IEVLRFLLSNLRWYLDEY 402 (1351)
Q Consensus 333 GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~-------~~w~-~~~ln~~~--p~v~~~l~~~l~~W~~e~ 402 (1351)
||+||||+|+||+ .++.+... .+.||+..+++.. ..|. ..+||+.+ |+|+++|+++++||++ +
T Consensus 334 GI~VilD~V~Nhs-~~~~~~~~-----~~dwf~~~~dg~~~~~~~~~~~~~~~~dLn~~n~~p~V~~~l~~~l~~Wi~-~ 406 (695)
T 3zss_A 334 GLEIALDFALQCS-PDHPWVHK-----HPEWFHHRPDGTIAHAENPPKKYQDIYPIAFDADPDGLATETVRILRHWMD-H 406 (695)
T ss_dssp TCEEEEEECCEEC-TTSTHHHH-----CGGGSCCCTTSCCCCEEETTEEETTCEECCCSSCHHHHHHHHHHHHHHHHH-T
T ss_pred CCEEEEEeeccCC-ccchhhhc-----ccceeeecCCCCcccCCCCCccccccccccccCCcHHHHHHHHHHHHHHHH-h
Confidence 9999999999984 44443211 1345544333321 1232 24699999 9999999999999998 9
Q ss_pred CCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcC---------------
Q psy9001 403 QFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV--------------- 467 (1351)
Q Consensus 403 ~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~--------------- 467 (1351)
||||||||++..+ +..||+.+++.+++.+|++++|||.|
T Consensus 407 GVDGfRlD~a~~~--------------------------~~~f~~~~~~~v~~~~pd~~~vgE~~~~p~~~~~l~~~gfd 460 (695)
T 3zss_A 407 GVRIFRVDNPHTK--------------------------PVAFWERVIADINGTDPDVIFLAEAFTRPAMMATLAQIGFQ 460 (695)
T ss_dssp TCCEEEESSGGGS--------------------------CHHHHHHHHHHHHHHCTTCEEEECCCSCHHHHHHHHHTTCS
T ss_pred CCCEEEecCcchh--------------------------hHHHHHHHHHHHHhhCCCceEEEeecCChHHhhhhhccCcC
Confidence 9999999998865 46799999999999999999999997
Q ss_pred ----------------------------------------------------------------CCCCCcccccccCCCC
Q psy9001 468 ----------------------------------------------------------------SGMPASCRPVTEGGTG 483 (1351)
Q Consensus 468 ----------------------------------------------------------------~~~p~~~~~~~~gg~g 483 (1351)
+|.|.|+++.|.|-.|
T Consensus 461 ~~~~y~~~~~~~~~l~~~~~~l~~~~~~~~~~~~FvdNHD~~R~~s~~g~~~~~kla~all~tl~GiP~IYyGdE~G~~g 540 (695)
T 3zss_A 461 QSYTYFTWRNTKQELTEYLTELSGEAASYMRPNFFANTPDILHAYLQHGGRPAFEVRAVLAATLSPTWGIYSGYELCENT 540 (695)
T ss_dssp EEECSGGGCCSHHHHHHHHHHHTTGGGGTCCEEEESCBTTBCCHHHHHHCHHHHHHHHHHHHHHCSEEEEETTGGGTCCC
T ss_pred ceechhhhhcchhHHHHHHHhhhhhhhhcccceecccCCCccchhcccchHHHHHHHHHHHHhcCCCcEEEcCeeccccC
Confidence 3444555554444222
Q ss_pred C---C---CcC------C---cCCC-CCCCcHHHHHHHHHHhhhcccccccCCcceEeecCCCcEEEEEeC----ceEEE
Q psy9001 484 F---D---YRL------E---IRPD-MSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERA----GLLFA 543 (1351)
Q Consensus 484 f---d---~~~------~---~~~d-~~~~sl~~f~k~L~~Lr~~~~~L~~g~~~~~~~~~~~~Vlaf~R~----~ll~v 543 (1351)
. + |.. . |... ....++.+|+|+||+||+++++|+.+..+..+..++++|++|.|. .+|||
T Consensus 541 ~~dp~~~ey~d~e~~~r~p~~W~~~~~~~~~l~~~ik~Li~LRk~~paL~~g~~~~~~~~~~~~vlaf~R~~~~~~vlVv 620 (695)
T 3zss_A 541 PLREGSEEYLDSEKYQLKPRDWTRAAREGTTIAPLVTRLNTIRRENPALRQLRDLHFHPTDKEEVIAYSKRQGSNTVLVV 620 (695)
T ss_dssp BSSTTCCSBTTCTTSSCCCCCHHHHHHHTCSCHHHHHHHHHHHHHCGGGGCSSCCEECCBSCTTEEEEEEEETTEEEEEE
T ss_pred CCCCCccccccccccccCCCCccccccccchHHHHHHHHHHHHHhCHHhcCCCcEEEEEcCCCcEEEEEEEcCCCEEEEE
Confidence 1 0 000 0 1100 012568999999999999999999876666665567889999995 89999
Q ss_pred EeCCCC
Q psy9001 544 FNFNGT 549 (1351)
Q Consensus 544 ~Nf~~~ 549 (1351)
+|+++.
T Consensus 621 iN~s~~ 626 (695)
T 3zss_A 621 VNLDPR 626 (695)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 999975
|
| >1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=376.34 Aligned_cols=255 Identities=18% Similarity=0.144 Sum_probs=166.2
Q ss_pred Ccccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcC--CCCCCCccccCCC-C-----
Q psy9001 1012 TPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE--FDGTQACFFHDGP-R----- 1082 (1351)
Q Consensus 1012 sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~--~dg~~~~yf~~~~-~----- 1082 (1351)
++.+||| ++||++|+|+|||++|||+||++||++||+||||+|+|||+.++...... -++....||...+ .
T Consensus 48 ~~~~~GY~~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~~~~~~f~~~~~~~~~y~d~y~~~~~~~~~~~ 127 (441)
T 1lwj_A 48 SISFHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDE 127 (441)
T ss_dssp CSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTBCCTTCHHHHHHHTTCHHHHTTBCBCCTTSCTTC
T ss_pred CCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCcccCchHHHHHHhccCCCCcceeeecCCCCCCcc
Confidence 3457999 99999999999999999999999999999999999999999987321100 1111123443111 0
Q ss_pred ----CCCCCC---------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCc
Q psy9001 1083 ----GTHPLW---------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY 1143 (1351)
Q Consensus 1083 ----g~~~~w---------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~ 1143 (1351)
+..+.| +..+||++||+||++|+++++||+++ ||||||||++.+|..
T Consensus 128 ~~~~~~~~~w~~~~~~~~y~~~f~~~~pdln~~np~V~~~l~~~~~~wl~~-gvDGfR~D~~~~i~~------------- 193 (441)
T 1lwj_A 128 RREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQVFDEMKRLVLHLLDM-GVDGFRFDAAKHMRD------------- 193 (441)
T ss_dssp BCSSSCCBCEEECTTSCEEECTTCTTSCBBCSSSHHHHHHHHHHHHHHHTT-TCCEEEETTGGGSSS-------------
T ss_pred cccCCCccccccccCCceEEcccCCCCCccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEeChhhhcc-------------
Confidence 000112 23589999999999999999999998 999999999998831
Q ss_pred ccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchh
Q psy9001 1144 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKY 1223 (1351)
Q Consensus 1144 ~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~ 1223 (1351)
...+...||+++++.+++. +|||.|.. +....++.. ||+..++. +.. ..+
T Consensus 194 -------~~~~~~~~~~~~~~~~~~~-----~igE~~~~-~~~~~~y~~---~~~~~~~~---------~~~-----~~~ 243 (441)
T 1lwj_A 194 -------TIEQNVRFWKYFLSDLKGI-----FLAEIWAE-ARMVDEHGR---IFGYMLNF---------DTS-----HCI 243 (441)
T ss_dssp -------SHHHHHHHHHHHTTTCCSE-----EEECCCSC-HHHHHHHHH---HHSEEECH---------HHH-----HHH
T ss_pred -------CCccHHHHHHHHHHHhHhh-----EEEccCCC-HHHHHHHHH---hCCEeEeh---------HHH-----HHH
Confidence 1344778998888877543 99999863 332222211 23322111 111 111
Q ss_pred HhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccC--C-HHHHH
Q psy9001 1224 KVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI--Q-TESNM 1300 (1351)
Q Consensus 1224 rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~--~-~~~~r 1300 (1351)
+..+.... ... +..... + .+. ......++|++|||+.|. .... . .+++|
T Consensus 244 ~~~~~~~~-----~~~----l~~~l~------~-----~~~---~~~~~~~~fl~nHD~~R~-----~~~~~~~~~~~~~ 295 (441)
T 1lwj_A 244 KEAVWKEN-----TRV----LIESIE------R-----AVI---AKDYLPVNFTSNHDMSRL-----ASFEGGFSKEKIK 295 (441)
T ss_dssp HHHHHTTC-----SHH----HHHHHH------H-----HTS---SCSSEEEEESCCTTSCCG-----GGTTTCCCHHHHH
T ss_pred HHhhccCC-----HHH----HHHHHH------H-----Hhc---cCCCceeeeccCCCCCCc-----ccccCCcHHHHHH
Confidence 22221000 000 000000 0 000 011122899999999864 2222 1 57899
Q ss_pred HHHHHHHccCCccEEEee-cccCCCC----ccceeeccCCcce
Q psy9001 1301 NGFGIQTLPTQSPLYLVA-KIEKPCS----TREVVKAPLPFGV 1338 (1351)
Q Consensus 1301 ~A~allltspGiP~If~g-~~~~~~~----~~~~~~~p~~~~~ 1338 (1351)
+|++++||+||+||||+| |+...+. .+..+|.||||.-
T Consensus 296 ~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~R~~m~W~~ 338 (441)
T 1lwj_A 296 LSISILFTLPGVPLVFYGDELGMKGVYQKPNTEVVLDPFPWNE 338 (441)
T ss_dssp HHHHHHHTSSSEEEEETTTTTTCCCCCCSSCGGGGSCCCCSSS
T ss_pred HHHHHHHhCCCceEEEchHhhCCCCCCCCCCCccccCCccccc
Confidence 999999999999999999 7777665 2667899999974
|
| >3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=381.10 Aligned_cols=200 Identities=14% Similarity=0.176 Sum_probs=154.7
Q ss_pred CceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCC
Q psy9001 178 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 257 (1351)
Q Consensus 178 ~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~ 257 (1351)
+++|||+|+++|+ |+|++|+++ |||||+||||+ |||||||+ + +..
T Consensus 90 ~~viY~i~~~~F~-----Gdl~gi~~~-LdyL~~LGv~~----I~L~Pi~~--------------------~--~~~--- 134 (644)
T 3czg_A 90 HMLGYSAYADRFA-----GTLQGVAER-VPYLQELGVRY----LHLLPFLR--------------------A--RAG--- 134 (644)
T ss_dssp TCCEEEECHHHHH-----SSHHHHHHT-HHHHHHHTCCE----EEECCCBC--------------------B--CSS---
T ss_pred CcEEEEEechhhC-----CCHHHHHHH-HHHHHHcCCCE----EEeCCCCc--------------------C--CCC---
Confidence 3899999999996 899999998 89999999999 99999664 2 211
Q ss_pred CccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9001 258 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 337 (1351)
Q Consensus 258 ~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VI 337 (1351)
..+|||++.||+ +++ |+|||.+||++||++||++||+||
T Consensus 135 -~~~~GY~~~dy~---------------------~vd-------------------p~~Gt~~df~~Lv~~aH~~GI~Vi 173 (644)
T 3czg_A 135 -DNDGGFAVSDYG---------------------QVE-------------------PSLGSNDDLVALTSRLREAGISLC 173 (644)
T ss_dssp -CCTTTTSBSCTT---------------------SBC-------------------GGGCCHHHHHHHHHHHHHTTCEEE
T ss_pred -CCCCCcCccccc---------------------ccC-------------------cccCCHHHHHHHHHHHHHCCCEEE
Confidence 245999999999 777 999999999999999999999999
Q ss_pred EEeeccccccCCcCCcccCCCCC--CcCcccCCCC-----------------CCCCCC----------------CccCCC
Q psy9001 338 LDVVHSHASKNVLDGLNEFDGTQ--ACFFHDGPRG-----------------THPLWD----------------SRLFNY 382 (1351)
Q Consensus 338 LDvV~NH~~~~~~~~~~~f~g~~--~~yy~~~~~~-----------------~~~~w~----------------~~~ln~ 382 (1351)
||+|+||++.++.|+.....|.. ..||...+.. ....|. .++||+
T Consensus 174 lD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~p~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~f~~~~pdLN~ 253 (644)
T 3czg_A 174 ADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPDRYEATLGQVFPHTAPGNFTWVDDTAQWMWTTFYPYQWDLNW 253 (644)
T ss_dssp EEECCSEEETTSHHHHHHHTTCHHHHTTBCEESSSHHHHHHHHHCCCC------CCEEEETTTTEEEECSSSTTEEEBCT
T ss_pred EEEecCCcccchhhHHHHhcCCCcccCceecCCCCCCCcchhhcccccCCCCCCCCccccCCCCceEecccccCCCcCCC
Confidence 99999999998765432222211 1233211100 001221 137999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCc-hHHHHHHHHHHHHHhhCCCeE
Q psy9001 383 SEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT-DALIYLMVANKFLHDKYPEII 461 (1351)
Q Consensus 383 ~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~f~~~~~~~v~~~~P~~~ 461 (1351)
+||+|+++|+++++||+ ++||||||+|++..|... .+ . ...+. +..+||+++++.+++..|+++
T Consensus 254 ~np~V~~~i~~~~~~wl-~~GvDGfRlDa~~~i~~~-~~--~-----------~~~n~p~~~~~l~~~r~~~~~~~p~~~ 318 (644)
T 3czg_A 254 SNPAVFGDMALAMLRLA-NLGVEAFRLDSTAYLWKR-IG--T-----------DCMNQSEAHTLLVALRAVTDIVAPAVV 318 (644)
T ss_dssp TSHHHHHHHHHHHHHHH-HTTEEEEEEETGGGSCCC-TT--S-----------CSSSCHHHHHHHHHHHHHHHHHCTTCE
T ss_pred CCHHHHHHHHHHHHHHH-HcCCCEEEEecccccccc-cC--C-----------cccCcHHHHHHHHHHHHHHHHhCCCeE
Confidence 99999999999999999 599999999999988321 11 0 01222 356899999999999999999
Q ss_pred EEEEcCC
Q psy9001 462 TIAEDVS 468 (1351)
Q Consensus 462 ~iaE~~~ 468 (1351)
+|||.|.
T Consensus 319 ligE~~~ 325 (644)
T 3czg_A 319 MKAEAIV 325 (644)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9999984
|
| >1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=375.99 Aligned_cols=264 Identities=16% Similarity=0.133 Sum_probs=164.1
Q ss_pred cccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc---CcCCCCCCCcccc--CCCCCC-CCC
Q psy9001 1015 QLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG---LNEFDGTQACFFH--DGPRGT-HPL 1087 (1351)
Q Consensus 1015 ~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~---l~~~dg~~~~yf~--~~~~g~-~~~ 1087 (1351)
+||| ++||++|+|+|||++|||+||++||++||+||||+|+|||+.+|... +..-+.....||. ....|. ..+
T Consensus 61 ~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NHts~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~ 140 (557)
T 1zja_A 61 DNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNN 140 (557)
T ss_dssp TTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCBTTBCSSC
T ss_pred CCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEeccccccchhHHHHhhcCCCCCCccceEecCCcCCCCCcc
Confidence 5899 99999999999999999999999999999999999999999987422 1111222233443 211111 112
Q ss_pred C-------------------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCC
Q psy9001 1088 W-------------------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGH 1142 (1351)
Q Consensus 1088 w-------------------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~ 1142 (1351)
| +..+||++||+||++|+++++||++ +||||||||+|.+|.+.. +++..
T Consensus 141 ~~~~f~~~~w~~~~~~~~~y~~~f~~~~pdLN~~np~Vr~~l~~~~~~Wl~-~gvDGfRlDa~~~i~~~~-----~~~~~ 214 (557)
T 1zja_A 141 YPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFWLD-KGVSGMRFDTVATYSKTP-----GFPDL 214 (557)
T ss_dssp CBCTTSSBSEEEETTTTEEEECSSCTTSCBBCTTCHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSSCCT-----TCCCC
T ss_pred ccccCCCccccccCCcCcEEEecccccCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEeecchhhccccc-----ccCcC
Confidence 2 2368999999999999999999997 899999999999995421 11100
Q ss_pred cc------cccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCC-cccccccCCccccccccccccccccccccc
Q psy9001 1143 YD------EYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPA-SCRPVTEGGTGFDYRLGQYLHQHSILFPRV 1215 (1351)
Q Consensus 1143 ~~------~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~-~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~ 1215 (1351)
.. ..+ ..+......||+++++.+++. +++++|||.|...+. +..+...++.+|+..++. +....++.
T Consensus 215 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~v~~~-~~~~~igE~~~~~~~~~~~y~~~~~~~~~~~~~f--~~~~~~~~-- 288 (557)
T 1zja_A 215 TPEQMKNFAEA-YTQGPNLHRYLQEMHEKVFDH-YDAVTAGEIFGAPLNQVPLFIDSRRKELDMAFTF--DLIRYDRA-- 288 (557)
T ss_dssp CHHHHHTHHHH-TTCCTTHHHHHHHHHHHTGGG-SCCEEEEECCSCCGGGHHHHHCGGGCSCSEEECC--TTTTTTBC--
T ss_pred CCccccccccc-ccCChHHHHHHHHHHHHHhcc-CCeEEEEeccCCCHHHHHHHhccCCCcccEEEeh--hhhhhccc--
Confidence 00 000 011234678999999988775 599999999965443 333333334455533321 11000000
Q ss_pred ccccC------chhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCccc
Q psy9001 1216 GVEQA------GKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENN 1289 (1351)
Q Consensus 1216 ~~e~n------~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r 1289 (1351)
...|. ..++..+ . .|. ...+.. ...++|++|||+.|.. .+
T Consensus 289 ~~~~~~~~~~~~~l~~~l---------------------~--~~~-------~~~~~~---~~~~~fl~nHD~~R~~-~~ 334 (557)
T 1zja_A 289 LDRWHTIPRTLADFRQTI---------------------D--KVD-------AIAGEY---GWNTFFLGNHDNPRAV-SH 334 (557)
T ss_dssp TTSSCBCCCCHHHHHHHH---------------------H--HHH-------HHHTTT---CCBEECSCCTTSCCHH-HH
T ss_pred ccccccCCCCHHHHHHHH---------------------H--HHH-------HhcccC---CccceeccCCCCcchh-hh
Confidence 00000 0011000 0 000 001100 1116899999998651 11
Q ss_pred cccc---CCHHHHHHHHHHHHccCCccEEEee-cccCCC
Q psy9001 1290 MKRY---IQTESNMNGFGIQTLPTQSPLYLVA-KIEKPC 1324 (1351)
Q Consensus 1290 ~~~~---~~~~~~r~A~allltspGiP~If~g-~~~~~~ 1324 (1351)
+... .+.+++|+|++++||+||+||||+| |+...+
T Consensus 335 ~~~~~~~~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~ 373 (557)
T 1zja_A 335 FGDDRPQWREASAKALATVTLTQRGTPFIFQGDELGMTN 373 (557)
T ss_dssp HSCCSTTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCC
T ss_pred hCCCchhhHHHHHHHHHHHHHhCCCceEEEecccccccC
Confidence 1110 1235789999999999999999999 777766
|
| >4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=374.62 Aligned_cols=164 Identities=15% Similarity=0.192 Sum_probs=114.9
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccC---cCCCCCCCcccc-CCC-CCC-CC
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL---NEFDGTQACFFH-DGP-RGT-HP 1086 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l---~~~dg~~~~yf~-~~~-~g~-~~ 1086 (1351)
.+||| ++||++|||+|||++|||+||++||++||+||||+|+||||..|.... ...+.....||. .++ .+. ..
T Consensus 60 ~~~GYd~~dy~~vdp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NHts~~~~wf~~~~~~~~~~~~~~y~~~d~~~~~~~~ 139 (549)
T 4aie_A 60 VDNGYDISDYEAIDPQYGTMADMDELISKAKEHHIKIVMDLVVNHTSDQHKWFVEAKKGKDNQYRDYYIWRDPVDEHEPN 139 (549)
T ss_dssp TTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTSTTGGGBCEECCBTTBCSS
T ss_pred CCCCcCccCCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECccCCcCCcchhhhhhhcccccccccccccCCcccCCCC
Confidence 36899 999999999999999999999999999999999999999999873221 111111122221 111 000 00
Q ss_pred -------------------------CCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCC
Q psy9001 1087 -------------------------LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSG 1141 (1351)
Q Consensus 1087 -------------------------~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~ 1141 (1351)
..+.++||++||+|+++|+++++||++ +||||||||+|.+|.+.. +.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~dln~~np~v~~~i~~~~~~W~e-~gvDGfRlD~~~~l~~~~-------~~ 211 (549)
T 4aie_A 140 DLKSAFSGSAWKYDERSGQYYLHFFADQQPDLNWQNTELRQKIYNMMNFWLD-KGIGGFRMDVIELIGKDP-------DK 211 (549)
T ss_dssp CCBCTTSSBSEEEETTTTEEEECSSCTTSCBBCTTCHHHHHHHHHHHHHHHH-TTCCEEEETTGGGTTCBG-------GG
T ss_pred CcccccCCCcccccccCCceEecccCCCCCccccCCHHHHHHHHHHHHHHHH-hcCCceeEecHHhccccc-------hh
Confidence 013458999999999999999999976 799999999999884321 10
Q ss_pred CcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccc
Q psy9001 1142 HYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVT 1191 (1351)
Q Consensus 1142 ~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~ 1191 (1351)
... ........+++.+++.+ ...|++++|||.|...+.....+.
T Consensus 212 ~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~vgE~~~~~~~~~~~~~ 255 (549)
T 4aie_A 212 NIR-----ENGPMLHPYLQEMNKAT-FGKRDVMTVGETWNATPKIAEEYS 255 (549)
T ss_dssp TBC-----TTCTTHHHHHHHHHHHT-TTTTCCEEEEECTTCCHHHHHHHH
T ss_pred hhc-----ccccccchHHHhhhhcc-ccccceeeeecccCCCHHHHHHhc
Confidence 000 01122344555555544 457899999999988777666554
|
| >1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=376.47 Aligned_cols=200 Identities=18% Similarity=0.218 Sum_probs=155.1
Q ss_pred CceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCC
Q psy9001 178 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 257 (1351)
Q Consensus 178 ~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~ 257 (1351)
+++|||+|+++|. |+|++|+++ |||||+||||+ |||||||+ + +..
T Consensus 97 ~~viY~~~~~~f~-----Gdl~gi~~~-LdyL~~LGv~~----I~L~Pi~~--------------------~--~~~--- 141 (628)
T 1g5a_A 97 KQVGGVCYVDLFA-----GDLKGLKDK-IPYFQELGLTY----LHLMPLFK--------------------C--PEG--- 141 (628)
T ss_dssp TCCEEEECHHHHH-----SSHHHHHTT-HHHHHHHTCSE----EEECCCBC--------------------C--CSS---
T ss_pred CcEEEEEchhhhC-----CCHHHHHHH-HHHHHHcCCCE----EEeCCCCC--------------------C--CCC---
Confidence 4899999999995 899999998 89999999999 99999654 2 211
Q ss_pred CccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9001 258 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 337 (1351)
Q Consensus 258 ~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VI 337 (1351)
..+|||+++||+ +++ |+||+.+||++||++||++||+||
T Consensus 142 -~~~~GY~v~dy~---------------------~vd-------------------p~~Gt~~d~~~Lv~~ah~~GI~Vi 180 (628)
T 1g5a_A 142 -KSDGGYAVSSYR---------------------DVN-------------------PALGTIGDLREVIAALHEAGISAV 180 (628)
T ss_dssp -CSTTTTSCSCSS---------------------SBC-------------------TTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred -CCCCCcCCcccC---------------------CcC-------------------ccCCCHHHHHHHHHHHHHCCCEEE
Confidence 245999999999 777 999999999999999999999999
Q ss_pred EEeeccccccCCcCCcccCCCCC--CcCcccCCCC------------C-----CC--------CC--C-----CccCCCC
Q psy9001 338 LDVVHSHASKNVLDGLNEFDGTQ--ACFFHDGPRG------------T-----HP--------LW--D-----SRLFNYS 383 (1351)
Q Consensus 338 LDvV~NH~~~~~~~~~~~f~g~~--~~yy~~~~~~------------~-----~~--------~w--~-----~~~ln~~ 383 (1351)
||+|+||++.++.|+.....|.. ..||...+.. . .. .| . .++||++
T Consensus 181 lD~V~NH~s~~~~wf~~~~~g~~~y~d~y~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~pdLN~~ 260 (628)
T 1g5a_A 181 VDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYS 260 (628)
T ss_dssp EEECCSEEETTSHHHHHHHTTCGGGTTSBCEESSSHHHHHHTTTCCCSSTTTCSTTEEECTTSCEEECSSSTTEEEBCTT
T ss_pred EEEecCcccccchhHHHHhcCCCccccccccCCCCCCcccccccccccCCCCCCCccccCCCCCEEeccCCCCCCccCCC
Confidence 99999999998876543333321 1233211100 0 00 11 1 2479999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccC-chHHHHHHHHHHHHHhhCCCeEE
Q psy9001 384 EIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDKYPEIIT 462 (1351)
Q Consensus 384 ~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~f~~~~~~~v~~~~P~~~~ 462 (1351)
||+|+++|+++++||++ +||||||+|+|..|... .+ . . ..+ .+..+||+++++.+++..|++++
T Consensus 261 np~V~~~i~~~l~~w~~-~GvDGfRlDa~~~i~k~-~g--~--------~---~~~~p~~~~~~~~~r~~~~~~~p~~~~ 325 (628)
T 1g5a_A 261 NPWVFRAMAGEMLFLAN-LGVDILRMDAVAFIWKQ-MG--T--------S---CENLPQAHALIRAFNAVMRIAAPAVFF 325 (628)
T ss_dssp SHHHHHHHHHHHHHHHT-TTCSEEEETTGGGSCCC-TT--S--------C---SSSCHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred CHHHHHHHHHHHHHHHH-cCCCEEEEecccccccc-cC--c--------c---ccCcHHHHHHHHHHHHHHHHhCCCeEE
Confidence 99999999999999995 99999999999988321 11 0 0 112 24578999999999999999999
Q ss_pred EEEcCC
Q psy9001 463 IAEDVS 468 (1351)
Q Consensus 463 iaE~~~ 468 (1351)
|||.|.
T Consensus 326 igE~~~ 331 (628)
T 1g5a_A 326 KSEAIV 331 (628)
T ss_dssp EECCCS
T ss_pred EEEecC
Confidence 999884
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=361.64 Aligned_cols=205 Identities=18% Similarity=0.224 Sum_probs=155.7
Q ss_pred CCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCC
Q psy9001 177 DNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 256 (1351)
Q Consensus 177 ~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s 256 (1351)
++.+|||++.+.++++ .|+|++|+++ |||||+||||+ |||||||+ . +.
T Consensus 3 ~~~vi~q~f~w~~~~~--gG~~~gi~~~-LdyL~~LGvt~----I~l~Pi~~--------------------~--~~--- 50 (480)
T 1ud2_A 3 LNGTMMQYYEWHLEND--GQHWNRLHDD-AAALSDAGITA----IWIPPAYK--------------------G--NS--- 50 (480)
T ss_dssp CCCCEEECCCTTCCCS--SCHHHHHHHH-HHHHHHHTCCE----EEECCCSE--------------------E--SS---
T ss_pred CCceEEEeeeccCCCC--CCcHHHHHHH-HHHHHHcCCCE----EEeCCccc--------------------C--CC---
Confidence 4679999999988764 4999999998 99999999999 99999553 2 11
Q ss_pred CCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEE
Q psy9001 257 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 336 (1351)
Q Consensus 257 ~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~V 336 (1351)
..+|||++.||| ++. .|... -.|||+||+++|||+||++||++||+|
T Consensus 51 --~~~~GY~~~dy~---------------------~~~-~~~~~---------~~idp~~Gt~~df~~lv~~aH~~Gi~V 97 (480)
T 1ud2_A 51 --QADVGYGAYDLY---------------------DLG-EFNQK---------GTVRTKYGTKAQLERAIGSLKSNDINV 97 (480)
T ss_dssp --TTCCSSSEEETT---------------------CSS-CSCBT---------TBSSCSSCCHHHHHHHHHHHHHTTCEE
T ss_pred --CCCCCcCccchh---------------------hcc-ccccc---------CccCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 135999999999 433 11110 026699999999999999999999999
Q ss_pred EEEeecccccc--CCcCCc------------------------ccCCCCCCc-------CcccC------CCC-------
Q psy9001 337 LLDVVHSHASK--NVLDGL------------------------NEFDGTQAC-------FFHDG------PRG------- 370 (1351)
Q Consensus 337 ILDvV~NH~~~--~~~~~~------------------------~~f~g~~~~-------yy~~~------~~~------- 370 (1351)
|||+|+||++. .++|.. ..|.|..+. ||+.. +..
T Consensus 98 ilD~V~NH~~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~~w~~~~~pg~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~ 177 (480)
T 1ud2_A 98 YGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRF 177 (480)
T ss_dssp EEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCGGGTTSSCCCCBCGGGEEEEEEETTTTEEEEEEE
T ss_pred EEEEccCccccccccccceeeecCCcccccccccccccccccccccCCCCCCcccCcccccccCCCCCcccccccccccc
Confidence 99999999974 222211 113332211 22211 100
Q ss_pred CCCCCCC--------------ccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCC
Q psy9001 371 THPLWDS--------------RLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGL 436 (1351)
Q Consensus 371 ~~~~w~~--------------~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~ 436 (1351)
....|.. ++||++||+||++|+++++||++++||||||||+|.+|
T Consensus 178 ~~~~W~~~~~~~~g~~~~~~~~dLn~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i--------------------- 236 (480)
T 1ud2_A 178 ANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHI--------------------- 236 (480)
T ss_dssp TTCCCCSSCCCTTSCCCCCSSEEECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGS---------------------
T ss_pred cCCCcccccccccCccccccCCccCCCCHHHHHHHHHHHHHHHHccCCCEEEEcchhhC---------------------
Confidence 0134432 68999999999999999999999999999999999988
Q ss_pred ccCchHHHHHHHHHHHHHh-hCCCeEEEEEcCCCCCC
Q psy9001 437 NVDTDALIYLMVANKFLHD-KYPEIITIAEDVSGMPA 472 (1351)
Q Consensus 437 ~~~~~~~~f~~~~~~~v~~-~~P~~~~iaE~~~~~p~ 472 (1351)
..+||+.+++++++ ..|++++|||.|.+.+.
T Consensus 237 -----~~~f~~~~~~~~~~~~~~~~~~igE~~~~~~~ 268 (480)
T 1ud2_A 237 -----PFWYTSDWVRHQRNEADQDLFVVGEYWKDDVG 268 (480)
T ss_dssp -----CHHHHHHHHHHHHHHCSSCCEEEECCCCSCHH
T ss_pred -----CHHHHHHHHHHHHHhcCCCcEEEEeccCCCHH
Confidence 23589999999988 78999999999976543
|
| >3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=376.90 Aligned_cols=272 Identities=15% Similarity=0.102 Sum_probs=167.2
Q ss_pred cccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc---CcCCCCCCCcccc-CCCCC------
Q psy9001 1015 QLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG---LNEFDGTQACFFH-DGPRG------ 1083 (1351)
Q Consensus 1015 ~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~---l~~~dg~~~~yf~-~~~~g------ 1083 (1351)
+||| ++||++|+|+|||++|||+||++||++||+||||+|+|||+..|... +...+.....||. .+...
T Consensus 69 ~~GY~~~dy~~id~~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH~~~~~~wf~~~~~~~~~~y~d~y~~~~~~~~~~~g~ 148 (589)
T 3aj7_A 69 DMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGK 148 (589)
T ss_dssp TTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCSSSTTGGGBCEECCSEECTTSC
T ss_pred CCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccccchhHHHHHhcCCCCCCCCceeecCCcccccccC
Confidence 5899 99999999999999999999999999999999999999999987422 1122222334443 12110
Q ss_pred --CCCCC-------------------------CCCCCCCCCHHHHHHHHH-HHHHHHHHhCCCeEEEcCcccccccCCCC
Q psy9001 1084 --THPLW-------------------------DSRLFNYSEIEVLRFLLS-NLRWYLEEYQFDGFRFDGVTSMLYHNHGC 1135 (1351)
Q Consensus 1084 --~~~~w-------------------------~~~dlN~~np~Vr~~lid-~l~yWl~eygVDGFRfD~a~~m~~~~~g~ 1135 (1351)
...+| +..+||++||+||++|++ +++||++ +||||||||+|.+|.+.....
T Consensus 149 ~~~p~~~~~~f~g~~w~~~~~~~~~y~~~f~~~~pdLN~~np~Vr~~l~~~~~~~Wl~-~gvDGfRlDa~~~i~~~~~~~ 227 (589)
T 3aj7_A 149 PIPPNNWKSYFGGSAWTFDEKTQEFYLRLFCSTQPDLNWENEDCRKAIYESAVGYWLD-HGVDGFRIDVGSLYSKVVGLP 227 (589)
T ss_dssp EECSSCBBCTTSSBSEEEETTTTEEEECSSSTTCCBBCTTCHHHHHHHHHHHTHHHHH-TTCCEEEETTGGGSCCCTTCC
T ss_pred CCCCCcccccCCCccceecCCCCeEEECccCCCCCccCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEccccccccccCCC
Confidence 11222 135899999999999999 9999998 799999999999996542111
Q ss_pred CC------CCCCCcccccCCcCChhHHHHHHHHHH----HHHhhCCCeEEEEccCCCCCCccc-ccccCCcccccccccc
Q psy9001 1136 GE------GFSGHYDEYFGLNVDTDALIYLMVANK----FLHDKYPEIITIAEDVSGMPASCR-PVTEGGTGFDYRLGQY 1204 (1351)
Q Consensus 1136 ~~------~~~~~~~~~~g~~~d~~~~~fl~~~~~----~l~~~~Pd~ilIaE~~~~~p~~~~-p~~~gg~GFdy~~~~~ 1204 (1351)
.. .++.....+ ..+..+...|++++++ .+++ .|++++|||.|.+.+..+. +...++.++++.+..
T Consensus 228 d~~~~~~~~~~~~~~~~--~~n~~~~~~~l~~~~~~~~~~v~~-~~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~f~f- 303 (589)
T 3aj7_A 228 DAPVVDKNSTWQSSDPY--TLNGPRIHEFHQEMNQFIRNRVKD-GREIMTVGEMQHASDETKRLYTSASRHELSELFNF- 303 (589)
T ss_dssp CCCCCCTTCSSBCCHHH--HSSCTTHHHHHHHHHHHHHHHCSS-CCCCEEEEEEECCCHHHHHHHHCGGGCSCSEEEEC-
T ss_pred cCCcccccccccccccc--ccccHHHHHHHHHHHHHHHHHhcc-CCCeEEEEEeCCCCHHHHHHhhccCCCccceeeeh-
Confidence 10 111000000 0122347789999998 6665 7899999999977654333 333333344432221
Q ss_pred ccccccccccc--c--ccc-CchhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccC
Q psy9001 1205 LHQHSILFPRV--G--VEQ-AGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNN 1279 (1351)
Q Consensus 1205 ~h~~~~~f~~~--~--~e~-n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~n 1279 (1351)
+....++... + ..+ ...++..+. .+. ..+ +.. ....++|++|
T Consensus 304 -~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----------------------~~~------~~~-~~~--~~~~~~fl~N 350 (589)
T 3aj7_A 304 -SHTDVGTSPLFRYNLVPFELKDWKIALA-----------------------ELF------RYI-NGT--DCWSTIYLEN 350 (589)
T ss_dssp -HHHHTTEETTEEEEECCCCHHHHHHHHH-----------------------TTT------GGG-TTS--SCCCEECSCC
T ss_pred -hhhhhhcccccccccCCCCHHHHHHHHH-----------------------HHH------Hhc-ccC--CCcccccccC
Confidence 1100000000 0 000 001111110 000 001 100 0111789999
Q ss_pred CCCCcCCcccccc---cCCHHHHHHHHHHHHccCCccEEEee-cccCCCC
Q psy9001 1280 VREERNNENNMKR---YIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCS 1325 (1351)
Q Consensus 1280 HD~~rn~~~r~~~---~~~~~~~r~A~allltspGiP~If~g-~~~~~~~ 1325 (1351)
||+.|.. .++.. ..+.+++|+|++++||+||+||||+| |+...+.
T Consensus 351 HD~~R~~-~~~~~~~~~~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~~ 399 (589)
T 3aj7_A 351 HDQPRSI-TRFGDDSPKNRVISGKLLSVLLSALTGTLYVYQGQELGQINF 399 (589)
T ss_dssp TTSCCHH-HHHSCCSTTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCC
T ss_pred CCCcchH-HHhCCCchhhHHHHHHHHHHHHHHCCCCcEEEcChhcccCCC
Confidence 9998751 11111 01136799999999999999999999 7777765
|
| >3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=377.79 Aligned_cols=187 Identities=13% Similarity=0.159 Sum_probs=122.7
Q ss_pred CCCCCC-------CHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHH
Q psy9001 1091 RLFNYS-------EIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVAN 1163 (1351)
Q Consensus 1091 ~dlN~~-------np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~ 1163 (1351)
.+||++ ||+| ++|+++++||+++ ||||||||+|.+|.+.. ...+...||++++
T Consensus 328 PDLN~~~~~~~~~Np~V-~~l~dvl~~Wl~~-GVDGFRlDaa~~i~k~~------------------~~~~~~~f~~e~~ 387 (669)
T 3k8k_A 328 ADLNYGPVDQAGESPAY-QAIADAAKGWIAR-GVDGLRLDAVKHIYHSE------------------TSEENPRFLKMFY 387 (669)
T ss_dssp EEBCCCSGGGGGGCHHH-HHHHHHHHHHHTT-TCCEEEETTGGGSSSCS------------------SSSHHHHHHHHHH
T ss_pred CccCCCCCccCCCCHHH-HHHHHHHHHHHHC-CCCEEEEechhhhhhcc------------------CCCccHHHHHHHH
Confidence 589999 9999 9999999999998 99999999999995321 1245789999999
Q ss_pred HHHHh------hCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCc
Q psy9001 1164 KFLHD------KYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGF 1237 (1351)
Q Consensus 1164 ~~l~~------~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf 1237 (1351)
+.+++ .+|++++|||.|.+....+..+. ||+.. ++|+.. ..++.++.+.. ..
T Consensus 388 ~~v~~~~~~~g~~pd~~lvGEv~~~~~~~~~y~~----~l~~v---------fnF~~~-----~~l~~~~~~~~--~~-- 445 (669)
T 3k8k_A 388 EDMNAYYKQKGHTDDFYMIGEVLSEYDKVAPYYK----GLPAL---------FEFSFW-----YRLEWGINNST--GC-- 445 (669)
T ss_dssp HHHHHHHHHTTCCSCCEEEECCCSCHHHHGGGGG----TCSEE---------ECHHHH-----HHHHHHHHTTC--CT--
T ss_pred HHHHHHhhhcccCCCeEEEeccCCCHHHHHHHhc----cCCce---------eccHHH-----HHHHHHHhcCC--HH--
Confidence 99999 89999999999864333333331 22211 112111 11222221100 00
Q ss_pred cccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccC--CHHHHHHHHHHHHccCCccEE
Q psy9001 1238 NRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI--QTESNMNGFGIQTLPTQSPLY 1315 (1351)
Q Consensus 1238 ~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~--~~~~~r~A~allltspGiP~I 1315 (1351)
.+..... .+ ...+...... ...++|++|||+.|. .... ..+++|+|++++||+||+|||
T Consensus 446 -----~l~~~l~--~~------~~~~~~~~~~-~~~~~Fl~NHD~~R~-----~s~~g~d~~~~kla~allltlpG~P~I 506 (669)
T 3k8k_A 446 -----YFAKDIL--SY------QQKYANYRSD-YIEATKLSNHDEDRT-----SSKLGKSADKCKLAAAVLLTSAGHPYI 506 (669)
T ss_dssp -----THHHHHH--HH------HHHHHTTCTT-CEEECCSCCTTSCCH-----HHHTTTCHHHHHHHHHHHHTSSSCCEE
T ss_pred -----HHHHHHH--HH------HHHhhhhccc-ceeeeeccCCCCCcc-----ccccCCCHHHHHHHHHHHHhCCCccEE
Confidence 0000000 00 0011111111 112789999999764 2222 357899999999999999999
Q ss_pred Eee-cccCCCCc---cceeeccCCcce
Q psy9001 1316 LVA-KIEKPCST---REVVKAPLPFGV 1338 (1351)
Q Consensus 1316 f~g-~~~~~~~~---~~~~~~p~~~~~ 1338 (1351)
|+| |+...+.. +..+|.||||+.
T Consensus 507 YyGdEiGm~~~~~~~d~~~Rtpm~W~~ 533 (669)
T 3k8k_A 507 YYGEELGLYGTKDNGDEYVRSPMLWGD 533 (669)
T ss_dssp ETTTTTTCCCCSTTCGGGGSCCCCCSS
T ss_pred EecccccccCCCCCCCccccCCccCCC
Confidence 999 88888764 678999999964
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=357.65 Aligned_cols=203 Identities=18% Similarity=0.244 Sum_probs=153.5
Q ss_pred CceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCC
Q psy9001 178 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 257 (1351)
Q Consensus 178 ~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~ 257 (1351)
+.+|||++...+.. ..|+|++|+++ |||||+||||+ |||||||+ . +..
T Consensus 2 ~~vi~q~f~w~~~~--~gG~~~gi~~~-LdyL~~LGvt~----I~L~Pi~~--------------------~--~~~--- 49 (483)
T 3bh4_A 2 NGTLMQYFEWYTPN--DGQHWKRLQND-AEHLSDIGITA----VWIPPAYK--------------------G--LSQ--- 49 (483)
T ss_dssp CCCEEECCCTTCCS--SSCHHHHHHHH-HHHHHHHTCCE----EEECCCSE--------------------E--SST---
T ss_pred CccEEEEEEeccCC--CCCCHHHHHHH-HHHHHhcCCCE----EEcCcccc--------------------C--CCC---
Confidence 46899988877754 35999999998 99999999999 99999553 2 111
Q ss_pred CccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9001 258 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 337 (1351)
Q Consensus 258 ~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VI 337 (1351)
.+|||++.||| ++. .|..+ -.|||+|||++|||+||++||++||+||
T Consensus 50 --~~~GY~~~dy~---------------------~~~-~~~~~---------~~id~~~Gt~~df~~lv~~aH~~Gi~Vi 96 (483)
T 3bh4_A 50 --SDNGYGPYDLY---------------------DLG-EFQQK---------GTVRTKYGTKSELQDAIGSLHSRNVQVY 96 (483)
T ss_dssp --TSCSSSEEETT---------------------CSS-CSCCS---------SCSSCSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred --CCCCccccccc---------------------ccc-ccccc---------CccCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 35999999999 332 11100 0266999999999999999999999999
Q ss_pred EEeecccccc--CCcCCc------------------------ccCCCCCCc-------CcccC------CC---------
Q psy9001 338 LDVVHSHASK--NVLDGL------------------------NEFDGTQAC-------FFHDG------PR--------- 369 (1351)
Q Consensus 338 LDvV~NH~~~--~~~~~~------------------------~~f~g~~~~-------yy~~~------~~--------- 369 (1351)
||+|+||++. .+.+.. ..|.|..+. ||+.. +.
T Consensus 97 lD~V~NH~~~~d~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 176 (483)
T 3bh4_A 97 GDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFR 176 (483)
T ss_dssp EEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEEEEEETTTTEEEEEEEC
T ss_pred EEEccCcccCcccccceeeeeeCccccccccccccccccccccccCCCCcccccCccccccCCCCCcccccCcccccccc
Confidence 9999999974 222211 123333211 12110 00
Q ss_pred CCCCCCCC--------------ccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCC
Q psy9001 370 GTHPLWDS--------------RLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435 (1351)
Q Consensus 370 ~~~~~w~~--------------~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~ 435 (1351)
+....|.+ ++||++||+||++|+++++||++++||||||||+|.+|
T Consensus 177 g~~~~W~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i-------------------- 236 (483)
T 3bh4_A 177 GEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHI-------------------- 236 (483)
T ss_dssp STTCCCCSSSCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGS--------------------
T ss_pred CCCCCcccccccccCccccccCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEechhcC--------------------
Confidence 11344542 58999999999999999999999999999999999988
Q ss_pred CccCchHHHHHHHHHHHHHh-hCCCeEEEEEcCCCCC
Q psy9001 436 LNVDTDALIYLMVANKFLHD-KYPEIITIAEDVSGMP 471 (1351)
Q Consensus 436 ~~~~~~~~~f~~~~~~~v~~-~~P~~~~iaE~~~~~p 471 (1351)
..+||+.+++++++ ..|++++|||.|.+.+
T Consensus 237 ------~~~f~~~~~~~~~~~~~~~~~~igE~~~~~~ 267 (483)
T 3bh4_A 237 ------KFSFLRDWVQAVRQATGKEMFTVAEYWQNNA 267 (483)
T ss_dssp ------CHHHHHHHHHHHHHHHCSCCEEEECCCCSCH
T ss_pred ------CHHHHHHHHHHHHHhcCCCcEEEEEecCCCh
Confidence 23589999999988 6899999999997644
|
| >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=357.20 Aligned_cols=165 Identities=18% Similarity=0.197 Sum_probs=126.0
Q ss_pred CCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccC
Q psy9001 176 PDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 255 (1351)
Q Consensus 176 ~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~ 255 (1351)
.++.+|||++.+ +|++++++ |||||+||||+ ||||||++. .. ... . ..
T Consensus 3 ~~~~~~~q~f~~---------~~~~i~~~-l~yl~~lG~~~----i~l~Pi~~~------------~~---~~~--~-~~ 50 (422)
T 1ua7_A 3 IKSGTILHAWNW---------SFNTLKHN-MKDIHDAGYTA----IQTSPINQV------------KE---GNQ--G-DK 50 (422)
T ss_dssp TTTSCEEECTTB---------CHHHHHHT-HHHHHHTTCSE----EEECCCEEE------------CC---TGG--G-CC
T ss_pred CcCcEEEEEecC---------CHHHHHHH-HHHHHHcCCCE----EEeCCcccc------------cc---CCc--C-cC
Confidence 357789998874 79999998 99999999999 999996541 00 000 0 00
Q ss_pred CCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9001 256 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 335 (1351)
Q Consensus 256 s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~ 335 (1351)
+....+|||++++|+ +++ |+||+++|||+||++||++||+
T Consensus 51 ~~~~~~~gY~~~~y~---------------------~~~-------------------~~~G~~~d~~~lv~~~h~~Gi~ 90 (422)
T 1ua7_A 51 SMSNWYWLYQPTSYQ---------------------IGN-------------------RYLGTEQEFKEMCAAAEEYGIK 90 (422)
T ss_dssp BGGGGGGGGCEEEEE---------------------EEE-------------------TTTEEHHHHHHHHHHHHTTTCE
T ss_pred ccCCccccccceeee---------------------ccC-------------------CCCCCHHHHHHHHHHHHHCCCE
Confidence 011246999999999 777 8999999999999999999999
Q ss_pred EEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCC------------CccCCCCCHHHHHHHHHHHHHHHHHcC
Q psy9001 336 VLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD------------SRLFNYSEIEVLRFLLSNLRWYLDEYQ 403 (1351)
Q Consensus 336 VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~------------~~~ln~~~p~v~~~l~~~l~~W~~e~~ 403 (1351)
||||+|+||++.++.+....+.+. +.||+.. +...+|. .++||+++|+||++|++++++|++ +|
T Consensus 91 VilD~V~NH~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~-~g 166 (422)
T 1ua7_A 91 VIVDAVINHTTFDYAAISNEVKSI-PNWTHGN--TQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLERALN-DG 166 (422)
T ss_dssp EEEEECCSBCCSCTTTSCHHHHTS-TTCEEEC--CBCCCTTCHHHHHHSBBTTBCEECTTSHHHHHHHHHHHHHHHH-TT
T ss_pred EEEEeccCcccCCccccCccccCC-cccccCC--CCCCCcCchhcccccccCCCCccccCCHHHHHHHHHHHHHHHH-cC
Confidence 999999999999865432112222 3455432 1122332 368999999999999999999995 99
Q ss_pred CCccccccccccc
Q psy9001 404 FDGFRFDGVTSML 416 (1351)
Q Consensus 404 vDGfR~D~a~~~~ 416 (1351)
|||||||+|.+|.
T Consensus 167 vDGfR~D~~~~~~ 179 (422)
T 1ua7_A 167 ADGFRFDAAKHIE 179 (422)
T ss_dssp CCEEEETTGGGSC
T ss_pred CCEEEEEhhhhcC
Confidence 9999999999884
|
| >1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=373.56 Aligned_cols=272 Identities=14% Similarity=0.133 Sum_probs=163.8
Q ss_pred cccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc---CcCCCCCCCcccc--CCCCCC-CCC
Q psy9001 1015 QLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG---LNEFDGTQACFFH--DGPRGT-HPL 1087 (1351)
Q Consensus 1015 ~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~---l~~~dg~~~~yf~--~~~~g~-~~~ 1087 (1351)
+||| ++||++|+|+|||++|||+||++||++||+||||+|+|||+..|... +...+.....||. ....+. ..+
T Consensus 74 ~~GYd~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~s~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~ 153 (570)
T 1m53_A 74 DNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNN 153 (570)
T ss_dssp TTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSSCSSC
T ss_pred CCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEeccccccccHHHHHhhcCCCCCCccceeecCCCCCCCCcc
Confidence 5899 99999999999999999999999999999999999999999987321 1111222223443 211111 111
Q ss_pred C-------------------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCC
Q psy9001 1088 W-------------------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGH 1142 (1351)
Q Consensus 1088 w-------------------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~ 1142 (1351)
| +..+||++||+||++|+++++||++ +||||||||+|.+|.... +++..
T Consensus 154 ~~~~f~~~~w~~~~~~~~~y~~~f~~~~pdLN~~np~Vr~~l~~~~~~Wl~-~gvDGfRlDa~~~i~~~~-----~~~~~ 227 (570)
T 1m53_A 154 YPSFFGGSAWQKDAKSGQYYLHYFARQQPDLNWDNPKVREDLYAMLRFWLD-KGVSGMRFDTVATYSKIP-----GFPNL 227 (570)
T ss_dssp CBCTTSSBSEEECTTTCCEEECSSCTTCCBBCTTSHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSSCCT-----TCCCC
T ss_pred ccccCCCccccccCCCCcEEECcccCcCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEcccccccccc-----ccccC
Confidence 1 1368999999999999999999997 899999999999995421 11100
Q ss_pred cc----cccC-CcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcc-cccccCCcccccccccccccccccccccc
Q psy9001 1143 YD----EYFG-LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASC-RPVTEGGTGFDYRLGQYLHQHSILFPRVG 1216 (1351)
Q Consensus 1143 ~~----~~~g-~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~-~p~~~gg~GFdy~~~~~~h~~~~~f~~~~ 1216 (1351)
.. .+.+ .........||+++++.+++. +++++|||.|...+..+ .+...++.+|+..++. +. ..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~-~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~~~f--~~-------~~ 297 (570)
T 1m53_A 228 TPEQQKNFAEQYTMGPNIHRYIQEMNRKVLSR-YDVATAGEIFGVPLDRSSQFFDRRRHELNMAFMF--DL-------IR 297 (570)
T ss_dssp CHHHHHTHHHHTTCCTTHHHHHHHHHHHTGGG-SCCEEEEECTTCCGGGTHHHHCGGGCSCSEEECC--TT-------TT
T ss_pred CCcccccccccccCchHHHHHHHHHHHHHhcc-CCeEEEecccCCCHHHHHHHhcccCcccceeech--hh-------hh
Confidence 00 0000 011234678999999988775 59999999996655433 3333334455533221 11 00
Q ss_pred cccCchhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCccccccc---
Q psy9001 1217 VEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRY--- 1293 (1351)
Q Consensus 1217 ~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~--- 1293 (1351)
.+...+ ..+...... ..... ..........+.. ...++|++|||+.|... ++...
T Consensus 298 -------~~~~~~-----~~~~~~~~~-~~~l~-----~~l~~~~~~~~~~---~~~~~fl~nHD~~R~~~-~~~~~~~~ 355 (570)
T 1m53_A 298 -------LDRDSN-----ERWRHKSWS-LSQFR-----QIISKMDVTVGKY---GWNTFFLDNHDNPRAVS-HFGDDRPQ 355 (570)
T ss_dssp -------TTBCSS-----CTTCBCCCC-HHHHH-----HHHHHHHHHHTTT---CCBEECSCCTTSCCHHH-HHSCCSTT
T ss_pred -------cccccc-----cccccCCCC-HHHHH-----HHHHHHHHhcccC---CcccccCCCCCchhhHH-hhCCCchh
Confidence 000000 000000000 00000 0000000001100 11168999999987511 11110
Q ss_pred CCHHHHHHHHHHHHccCCccEEEee-cccCCC
Q psy9001 1294 IQTESNMNGFGIQTLPTQSPLYLVA-KIEKPC 1324 (1351)
Q Consensus 1294 ~~~~~~r~A~allltspGiP~If~g-~~~~~~ 1324 (1351)
.+.+++|+|++++||+||+||||+| |+...+
T Consensus 356 ~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~ 387 (570)
T 1m53_A 356 WREASAKALATITLTQRATPFIYQGSELGMTN 387 (570)
T ss_dssp THHHHHHHHHHHHTSSSSEEEEETTTTTTCCC
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEechhcCCCC
Confidence 1235789999999999999999999 777766
|
| >2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=372.14 Aligned_cols=268 Identities=13% Similarity=0.134 Sum_probs=163.4
Q ss_pred cccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc---CcCCCCCCCcccc--CCCCCC----
Q psy9001 1015 QLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG---LNEFDGTQACFFH--DGPRGT---- 1084 (1351)
Q Consensus 1015 ~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~---l~~~dg~~~~yf~--~~~~g~---- 1084 (1351)
+||| ++||++|+|+|||++|||+||++||++||+||||+|+|||+..|... +...+.....||. .++...
T Consensus 60 ~~GY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~y~d~y~~~~~p~~~~~~f 139 (543)
T 2zic_A 60 DNGYDIANYEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHTSDEHAWFIEAREHPDSSERDYYIWCDQPNDLESIF 139 (543)
T ss_dssp TTTSSCSEEEEECGGGCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHCTTSGGGGGBCEESSCCSCBCTT
T ss_pred CCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEecCcccccchhhHhhhcCCCCCCcceeecCCCCCcccccC
Confidence 5899 99999999999999999999999999999999999999999987321 1111222233443 211110
Q ss_pred -CCCC----------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCccccc
Q psy9001 1085 -HPLW----------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1147 (1351)
Q Consensus 1085 -~~~w----------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~ 1147 (1351)
.+.| +..+||++||+||++|+++++||++ +||||||||+|.+|.+ ++.. +.
T Consensus 140 ~~~~w~~~~~~~~~y~~~f~~~~pdLN~~np~Vr~~i~~~~~~Wl~-~GvDGfRlDa~~~i~~--------~~~~-~~-- 207 (543)
T 2zic_A 140 GGSAWQYDDKSDQYYLHFFSKKQPDLNWENANLRQKIYDMMNFWID-KGIGGFRMDVIDMIGK--------IPAQ-HI-- 207 (543)
T ss_dssp SSBSEEEETTTTEEEECSSCTTSCBBCTTCHHHHHHHHHHHHHHHT-TTCCEEEETTGGGTTC--------BGGG-TB--
T ss_pred CCCCCcccCCCCcEEECcccCCCCccCcCCHHHHHHHHHHHHHHHh-cCCCEEEECCccceee--------cCCC-cc--
Confidence 0111 2468999999999999999999998 8999999999999843 1100 00
Q ss_pred CCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCccccccc-CCcccccccccccccccccccccccccCchhHhh
Q psy9001 1148 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTE-GGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVV 1226 (1351)
Q Consensus 1148 g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~-gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~ 1226 (1351)
.........+|+++++.+++ .|++++|||.|...+....++.. ++.+|+..++. ... ..+.
T Consensus 208 -~~~~~~~~~~~~~~~~~v~~-~~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~~~f---------~~~-------~~~~ 269 (543)
T 2zic_A 208 -VSNGPKLHAYLKEMNAASFG-QHDLLTVGETWGATPEIAKQYSNPVNHELSMVFQF---------EHI-------GLQH 269 (543)
T ss_dssp -CSSCTTHHHHHHHHHHHTGG-GSCCEEEEECTTCCHHHHHHHHCGGGCSCSEEECC---------TTG-------GGGB
T ss_pred -ccccHHHHHHHHHHHHHHhc-cCCeEEEeeecCCCHHHHHHHhCCCCCccceEecc---------hhh-------cccc
Confidence 01123467899999999887 68999999998765544433332 23445532221 100 0000
Q ss_pred hccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCccccccc--CCHHHHHHHHH
Q psy9001 1227 LDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRY--IQTESNMNGFG 1304 (1351)
Q Consensus 1227 l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~--~~~~~~r~A~a 1304 (1351)
+... ..+............ ..........+.. ....++|++|||+.|... ++... .+.+++|+|++
T Consensus 270 ~~~~----~~~~~~~~~~~~~l~-----~~l~~~~~~~~~~--~~~~~~f~~nHD~~R~~~-~~~~~~~~~~~~~k~a~~ 337 (543)
T 2zic_A 270 KPEA----PKWDYVKELNVPALK-----TIFNKWQTELELG--QGWNSLFWNNHDLPRVLS-IWGNTGKYREKSAKALAI 337 (543)
T ss_dssp CTTS----CTTSBCSSCCHHHHH-----HHHHHHHHHSCTT--TCCCEECSCCTTSCCHHH-HTSCSSTTHHHHHHHHHH
T ss_pred cccc----ccccccCCCCHHHHH-----HHHHHHHHhcccC--CCeeeeeecCCCCccchh-hcCCchhhhHHHHHHHHH
Confidence 0000 000000000000000 0000000001100 011168999999986411 11100 11247899999
Q ss_pred HHHccCCccEEEee-cccCCC
Q psy9001 1305 IQTLPTQSPLYLVA-KIEKPC 1324 (1351)
Q Consensus 1305 llltspGiP~If~g-~~~~~~ 1324 (1351)
++||+||+||||+| |+...+
T Consensus 338 ~llt~pG~P~iy~G~E~G~~~ 358 (543)
T 2zic_A 338 LLHLMRGTPYIYQGEEIGMTN 358 (543)
T ss_dssp HHHTSSSEEEEETTGGGTCCC
T ss_pred HHHhCCCceEEEeccccCCCC
Confidence 99999999999999 777665
|
| >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=371.04 Aligned_cols=322 Identities=17% Similarity=0.143 Sum_probs=198.0
Q ss_pred CCceEEEeecCCcccCCCcccccccccccccceeccCCCcccccccccccccCCceEEEe-cCCCCCCCCcccccCccce
Q psy9001 889 ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELV-LPPNPDGDFNNWNREEFAY 967 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~-ip~~~~g~~Y~~~~~~~~y 967 (1351)
.+++|||+||+.|+.....+.... . ....-..-|+|+++..++++|+++|++.++|+ | +.
T Consensus 7 ~~~viYqi~~~~F~~~~~~~~~~~-~--~~~~~~~gG~~~gi~~~LdyL~~LGv~~I~l~Pi--------~~-------- 67 (484)
T 2aaa_A 7 RTQSIYFLLTDRFGRTDNSTTATC-N--TGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPI--------TE-------- 67 (484)
T ss_dssp TTCCEEECCHHHHCCTTCCSCCCC-C--GGGCSCCCCCHHHHHHTHHHHHTTTCCEEEECCC--------EE--------
T ss_pred ccCcEEEEeCccccCCCCCCCCCC-C--ccccccCCCCHHHHHHHHHHHHhcCCCEEEeCcc--------cc--------
Confidence 567899999999986544332110 0 00001112778888888888888887544444 2 00
Q ss_pred ecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcC
Q psy9001 968 KKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 1046 (1351)
Q Consensus 968 ~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~G 1046 (1351)
. + .+. .....++||| +.|||+|+|+|||.+|||+||++||++|
T Consensus 68 ------~-----~----------------------~~~---~~~~~~~~GY~~~dy~~id~~~Gt~~df~~lv~~~H~~G 111 (484)
T 2aaa_A 68 ------Q-----L----------------------PQD---TADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARG 111 (484)
T ss_dssp ------E-----C----------------------CCC---BTTBCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHTTT
T ss_pred ------C-----c----------------------ccc---cccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCC
Confidence 0 0 000 0001257999 9999999999999999999999999999
Q ss_pred CEEEEEeecccccCCcccc---CcCCCC-CCCccccCCCCC-C-------CCCCC------CCCCCCCCHHHHHHHHHHH
Q psy9001 1047 LYVLLDVVHSHASKNVLDG---LNEFDG-TQACFFHDGPRG-T-------HPLWD------SRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1047 I~VILDVV~NHts~~~~~~---l~~~dg-~~~~yf~~~~~g-~-------~~~w~------~~dlN~~np~Vr~~lid~l 1108 (1351)
|+||||+|+||++.++... ...+.. ....+|+..... . ...|. .++||++||+||++|++++
T Consensus 112 i~VilD~V~NH~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~dln~~np~v~~~l~~~~ 191 (484)
T 2aaa_A 112 MYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWV 191 (484)
T ss_dssp CEEEEEECCSBCCBSSCGGGCCGGGSBSCCSGGGBCCCCBCCCTTCHHHHHHSBEECSSSEECBBCTTSHHHHHHHHHHH
T ss_pred CEEEEEECcCCcCCCCCCCcccccccccCCcccccCCCCCcccCCCCccccccccccCccccCccccCCHHHHHHHHHHH
Confidence 9999999999999865311 000111 112334322110 0 11342 4689999999999999999
Q ss_pred HHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q psy9001 1109 RWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCR 1188 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~ 1188 (1351)
+||+++|||||||||+|.+|. ..||+++++. |++++|||.|.+.+....
T Consensus 192 ~~w~~~~gvDGfR~D~~~~i~--------------------------~~f~~~~~~~-----~~~~~igE~~~~~~~~~~ 240 (484)
T 2aaa_A 192 ADLVSNYSVDGLRIDSVLEVQ--------------------------PDFFPGYNKA-----SGVYCVGEIDNGNPASDC 240 (484)
T ss_dssp HHHHHHHTCCEEEESCSTTSC--------------------------GGGHHHHHHH-----HTSEEEECCCCSCHHHHG
T ss_pred HHHHHhcCCCEEEecccccCC--------------------------HHHHHHHHhc-----CCcEEEecCCCCChHHHH
Confidence 999999999999999999882 2366666653 789999999977665544
Q ss_pred ccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCC
Q psy9001 1189 PVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRT 1268 (1351)
Q Consensus 1189 p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~ 1268 (1351)
++.. +|+..+ +|+.. ..++.++.+.. .....+. .... .....+ +.
T Consensus 241 ~~~~---~~~~~~---------~~~~~-----~~l~~~~~~~~---~~~~~l~----~~l~--------~~~~~~-~~-- 285 (484)
T 2aaa_A 241 PYQK---VLDGVL---------NYPIY-----WQLLYAFESSS---GSISNLY----NMIK--------SVASDC-SD-- 285 (484)
T ss_dssp GGGG---TSSEEB---------CHHHH-----HHHHHHHSSTT---SCHHHHH----HHHH--------HHHHHC-SC--
T ss_pred hhcc---cCCcee---------ccHHH-----HHHHHHHHcCC---CCHHHHH----HHHH--------HHHHhC-CC--
Confidence 4331 122111 11111 12222221100 0000000 0000 000011 11
Q ss_pred ccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccCCccEEEee-cccCCCCccceeeccCCcc
Q psy9001 1269 GIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCSTREVVKAPLPFG 1337 (1351)
Q Consensus 1269 ~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~~~~~~~~~~p~~~~ 1337 (1351)
+...++|++|||+.|.. ......+++|+|++++||+||+||||+| |+...+.....++.|+ |.
T Consensus 286 -~~~~~~f~~nHD~~r~~----~~~~~~~~~~~a~a~~l~~~G~P~iy~G~E~g~~~~~d~~~r~~~-W~ 349 (484)
T 2aaa_A 286 -PTLLGNFIENHDNPRFA----KYTSDYSQAKNVLSYIFLSDGIPIVYAGEEQHYAGGKVPYNREAT-WL 349 (484)
T ss_dssp -GGGSEECSCCTTSCCGG----GTCCCHHHHHHHHHHHHHSSSEEEEETTTTTTCCCCTTTTTCCCG-GG
T ss_pred -hhhhceeccCCCccccc----cccCCHHHHHHHHHHHHhcCCccEEEecccccccCCCCcchhhhc-cc
Confidence 11128999999998642 1113457899999999999999999999 6776665555666666 64
|
| >1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=368.35 Aligned_cols=269 Identities=18% Similarity=0.180 Sum_probs=163.2
Q ss_pred cccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc---CcCCCCCCCcccc--CCCCCC-CCC
Q psy9001 1015 QLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG---LNEFDGTQACFFH--DGPRGT-HPL 1087 (1351)
Q Consensus 1015 ~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~---l~~~dg~~~~yf~--~~~~g~-~~~ 1087 (1351)
+||| ++||++|+|+|||++|||+||++||++||+||||+|+|||+..|... +...+.....||. ....+. ..+
T Consensus 60 ~~GYd~~dy~~id~~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH~s~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~~p~~ 139 (558)
T 1uok_A 60 DNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNN 139 (558)
T ss_dssp TTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSSCSSC
T ss_pred CCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEecccccccchHHHHHhcCCCCCcccceEeccCcCCCCCcc
Confidence 5899 99999999999999999999999999999999999999999987422 1111222223443 211111 111
Q ss_pred C-------------------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCC-C
Q psy9001 1088 W-------------------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFS-G 1141 (1351)
Q Consensus 1088 w-------------------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~-~ 1141 (1351)
| +..+||++||+||++|+++++||++ +||||||||+|.+|.... +...... +
T Consensus 140 ~~~~f~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~Vr~~i~~~~~~W~~-~gvDGfRlDa~~~i~~~~-~~~~~~~~~ 217 (558)
T 1uok_A 140 WGAAFSGSAWQYDEMTDEYYLHLFSKKQPDLNWDNEKVRQDVYEMMKFWLE-KGIDGFRMDVINFISKEE-GLPTVETEE 217 (558)
T ss_dssp BBCTTSSBSEEEETTTTEEEECSSCTTSCBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCCCT-TCCCCCCCC
T ss_pred ccccCCCccccccCCcCcEEeeccccccccccCCCHHHHHHHHHHHHHHHH-cCCCEEEEcccccccccc-ccCCCCCcc
Confidence 1 2368999999999999999999997 899999999999985431 1100000 0
Q ss_pred -Cccc--ccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCccc-ccccCCccccccccccccccccccccccc
Q psy9001 1142 -HYDE--YFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCR-PVTEGGTGFDYRLGQYLHQHSILFPRVGV 1217 (1351)
Q Consensus 1142 -~~~~--~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~-p~~~gg~GFdy~~~~~~h~~~~~f~~~~~ 1217 (1351)
.+.. .| .....+...||+++++.+++. +++++|||.|...+..+. +...++.+|+..++. .....++. ...
T Consensus 218 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~~~f--~~~~~~~~-~~~ 292 (558)
T 1uok_A 218 EGYVSGHKH-FMNGPNIHKYLHEMNEEVLSH-YDIMTVGEMPGVTTEEAKLYTGEERKELQMVFQF--EHMDLDSG-EGG 292 (558)
T ss_dssp SSCBCCGGG-TTTCTTHHHHHHHHHHHTGGG-SCCEEEEECTTCCHHHHHHHHCGGGCSCSCEECC--GGGSTTEE-TTE
T ss_pred ccccccccc-ccCChHHHHHHHHHHHHhhcc-CCeEEEEeccCCCHHHHHHHhccCCCccceEEeh--hhhhcccc-ccc
Confidence 0000 00 112345678999999988775 489999999965543332 222223344422111 10000000 000
Q ss_pred ccC------chhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCccccc
Q psy9001 1218 EQA------GKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMK 1291 (1351)
Q Consensus 1218 e~n------~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~ 1291 (1351)
.|. ..++.++. .|. ...+. ....++|++|||+.|... ++.
T Consensus 293 ~~~~~~~~~~~l~~~l~-----------------------~~~-------~~~~~---~~~~~~fl~NHD~~R~~~-~~g 338 (558)
T 1uok_A 293 KWDVKPCSLLTLKENLT-----------------------KWQ-------KALEH---TGWNSLYWNNHDQPRVVS-RFG 338 (558)
T ss_dssp EEEECCCCHHHHHHHHH-----------------------HHH-------HHTSS---SSCCEECSCCTTSCCHHH-HTS
T ss_pred ccccCCCCHHHHHHHHH-----------------------HHH-------Hhccc---CCccceeecCCCccchhh-hcC
Confidence 000 01111110 000 00110 011168999999987511 111
Q ss_pred cc--CCHHHHHHHHHHHHccCCccEEEee-cccCCC
Q psy9001 1292 RY--IQTESNMNGFGIQTLPTQSPLYLVA-KIEKPC 1324 (1351)
Q Consensus 1292 ~~--~~~~~~r~A~allltspGiP~If~g-~~~~~~ 1324 (1351)
.. .+.+++|+|++++||+||+||||+| |+...+
T Consensus 339 ~~~~~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~ 374 (558)
T 1uok_A 339 NDGMYRIESAKMLATVLHMMKGTPYIYQGEEIGMTN 374 (558)
T ss_dssp CSSTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCC
T ss_pred CchhhhHHHHHHHHHHHHhCCCceEEEechhcCccC
Confidence 10 1234789999999999999999999 777766
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=366.57 Aligned_cols=260 Identities=18% Similarity=0.228 Sum_probs=173.5
Q ss_pred cccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCC----CCCC-
Q psy9001 1015 QLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT----HPLW- 1088 (1351)
Q Consensus 1015 ~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~----~~~w- 1088 (1351)
.+|| ++||++|+|+|||.+|||+||++||++||+||||+|+||++.++.. +. ..+.||...+.+. ...|
T Consensus 65 ~~gY~~~dy~~i~~~~Gt~~~~~~lv~~~h~~Gi~vi~D~V~NH~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~w~ 139 (449)
T 3dhu_A 65 GSPYAIKDYRGINPEYGTLADFKALTDRAHELGMKVMLDIVYNHTSPDSVL-AT----EHPEWFYHDADGQLTNKVGDWS 139 (449)
T ss_dssp CCTTSBSCTTSCCGGGCCHHHHHHHHHHHHHTTCEEEEEECCSEECTTSHH-HH----HCGGGBCBCTTSCBCCSSTTCT
T ss_pred CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEccCcCcCccch-hh----cCccceEECCCCCcCCCCCCCC
Confidence 4788 8999999999999999999999999999999999999999987521 11 1234554333322 3345
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHh
Q psy9001 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD 1168 (1351)
Q Consensus 1089 ~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~ 1168 (1351)
+..+||++||+||++|++++++|+++ |||||||+|.+| +..||+++++.+++
T Consensus 140 ~~~dLn~~np~Vr~~l~~~l~~w~~~--vDGfRlDaa~~~--------------------------~~~f~~~~~~~~~~ 191 (449)
T 3dhu_A 140 DVKDLDYGHHELWQYQIDTLLYWSQF--VDGYRCDVAPLV--------------------------PLDFWLEARKQVNA 191 (449)
T ss_dssp TCEEBCTTSHHHHHHHHHHHHHHTTT--CSEEEETTGGGS--------------------------CHHHHHHHHHHHHH
T ss_pred CCCccCCCCHHHHHHHHHHHHHHHHh--CCEEEEEChhhC--------------------------CHHHHHHHHHHHHh
Confidence 45799999999999999999999997 999999999988 46789999999999
Q ss_pred hCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCccccc
Q psy9001 1169 KYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYET 1248 (1351)
Q Consensus 1169 ~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~ 1248 (1351)
.+|+++++||.|.+ .....+...| +++.....++. ..++ .++..++..+ +.+.++...+. ..
T Consensus 192 ~~p~~~~~gE~~~~--~~~~~~~~~g--~~~~~~~~l~~-~fd~-----~~~~~~~~~~-------~~~~~~~~~~~-~l 253 (449)
T 3dhu_A 192 KYPETLWLAESAGS--GFIEELRSQG--YTGLSDSELYQ-AFDM-----TYDYDVFGDF-------KDYWQGRSTVE-RY 253 (449)
T ss_dssp HSTTCEEEECCCCH--HHHHHHHHTT--CCCCCHHHHHT-TCSE-----EEGGGTHHHH-------HHHHTTSSCHH-HH
T ss_pred hCCCeEEEeccCCc--hHHHHHHhcC--ccccccchhhh-ccCc-----cccHHHHHHH-------HHHHhCCCCHH-HH
Confidence 99999999998752 2222222111 11111100000 0000 1112222222 01111111000 00
Q ss_pred ccCCccccc-CccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccCCccEEEee-cccCCCCc
Q psy9001 1249 YPEPWNNRR-NSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCST 1326 (1351)
Q Consensus 1249 ~~~~~~~r~-~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~~~~ 1326 (1351)
. ... .....| |.. ...++|++|||+.|. .......+++|+|++++||+||+|+||+| |+...+..
T Consensus 254 ~-----~~~~~~~~~~-~~~---~~~~~fl~NHD~~R~----~~~~~~~~~~k~a~a~~lt~pG~P~IyyG~E~g~~~~~ 320 (449)
T 3dhu_A 254 V-----DLLQRQDATF-PGN---YVKMRFLENHDNARM----MSLMHSKAEAVNNLTWIFMQRGIPLIYNGQEFLAEHQP 320 (449)
T ss_dssp H-----HHHHHHHTTS-CTT---CEEEECSCCTTSCCH----HHHCCSHHHHHHHHHHHHHSSSEEEEETTGGGTCCSCC
T ss_pred H-----HHHHHHHhhc-CCc---hhheeecccCCccch----hhhcCCHHHHHHHHHHHHhCCCCcEEEccEecccCCCC
Confidence 0 000 000111 111 122799999998753 11223557899999999999999999999 88888888
Q ss_pred cceeeccCCcce
Q psy9001 1327 REVVKAPLPFGV 1338 (1351)
Q Consensus 1327 ~~~~~~p~~~~~ 1338 (1351)
...++.|+||..
T Consensus 321 d~~~r~~~~W~~ 332 (449)
T 3dhu_A 321 SLFDRDTMVADR 332 (449)
T ss_dssp CSSSCCCCTTCC
T ss_pred CcccCCCcCCCc
Confidence 888999999964
|
| >3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=369.43 Aligned_cols=205 Identities=13% Similarity=0.148 Sum_probs=155.4
Q ss_pred CCCCC--ceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccc
Q psy9001 174 KKPDN--LKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTV 251 (1351)
Q Consensus 174 ~~~~~--~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~ 251 (1351)
.++++ ++|||+|+++|+ |+|++++++ |||||+||||+ |||||+|+ +
T Consensus 89 ~W~~~~~~viY~~~~~~f~-----G~~~gl~~~-LdyL~~lGv~~----v~l~P~~~--------------------~-- 136 (655)
T 3ucq_A 89 DWLQRPEMVGYVAYTDRFA-----GTLKGVEER-LDYLEGLGVKY----LHLMPLLR--------------------P-- 136 (655)
T ss_dssp TGGGSTTCCEEEECHHHHH-----SSHHHHHTT-HHHHHHTTCCE----EEECCCEE--------------------E--
T ss_pred CcccCCceEEEEEehhhhC-----CCHHHHHHh-hHHHHHcCCCE----EEECCCcC--------------------C--
Confidence 34444 499999999996 899999998 99999999999 99999543 2
Q ss_pred cccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHH
Q psy9001 252 AYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 331 (1351)
Q Consensus 252 ~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~ 331 (1351)
+.. ...|||+++||+ +++ |+|||.+||++||++||+
T Consensus 137 ~~~----~~~~GY~~~dy~---------------------~i~-------------------~~~Gt~~d~~~lv~~~h~ 172 (655)
T 3ucq_A 137 REG----ENDGGYAVQDYR---------------------AVR-------------------PDLGTMDDLSALARALRG 172 (655)
T ss_dssp CSS----CCGGGTSEEEEE---------------------EEC-------------------GGGCCHHHHHHHHHHHHH
T ss_pred CCC----CCCCCcCCcCcC---------------------ccC-------------------ccCCCHHHHHHHHHHHHH
Confidence 211 235999999999 777 999999999999999999
Q ss_pred cCCEEEEEeeccccccCCcCCcccCCCCC--CcCcc-cCC-----------C-------CCCCCC-------------C-
Q psy9001 332 AGLYVLLDVVHSHASKNVLDGLNEFDGTQ--ACFFH-DGP-----------R-------GTHPLW-------------D- 376 (1351)
Q Consensus 332 ~GI~VILDvV~NH~~~~~~~~~~~f~g~~--~~yy~-~~~-----------~-------~~~~~w-------------~- 376 (1351)
+||+||+|+|+||++.++.|......+.. ..||. ..+ . +....| .
T Consensus 173 ~Gi~Vi~D~V~NH~s~~~~wf~~~~~~~~~~~d~y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (655)
T 3ucq_A 173 RGISLVLDLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDRRGPDAFEATLPEIFPDFAPGNFSWDEEIGEGEGGWVWTT 252 (655)
T ss_dssp TTCEEEEEECCSEEETTSHHHHHHHTTCHHHHTTBCEESSSHHHHHHHTTCCCSCTTTSCSSEEEETTSSSSSCEEEECS
T ss_pred CCCEEEEEeeccccccchHHHHHhhcCCCCCcccEEEcCCCCCCccccccCccccccCCCCcccccccccccCCceEecc
Confidence 99999999999999998755432222211 11221 000 0 000011 1
Q ss_pred ----CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHH
Q psy9001 377 ----SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKF 452 (1351)
Q Consensus 377 ----~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~ 452 (1351)
.++||+.||+|+++|+++++||++ +||||||||+|.+|.... + .. .....+...|++++++.
T Consensus 253 f~~~qpDLn~~np~V~~~i~~~l~~w~~-~GvDGfRlDa~~~l~k~~-g--~~----------~~~~~~~~~~l~~~r~~ 318 (655)
T 3ucq_A 253 FNSYQWDLNWANPDVFLEFVDIILYLAN-RGVEVFRLDAIAFIWKRL-G--TD----------CQNQPEVHHLTRALRAA 318 (655)
T ss_dssp SSTTEEEBCTTSHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSCCCT-T--SC----------SSSCHHHHHHHHHHHHH
T ss_pred ccCCCCccCCCCHHHHHHHHHHHHHHHH-CCCCEEEEechhhccccC-C--Cc----------cCCcHHHHHHHHHHHHH
Confidence 148999999999999999999995 999999999999884321 1 00 01123567899999999
Q ss_pred HHhhCCCeEEEEEcCC
Q psy9001 453 LHDKYPEIITIAEDVS 468 (1351)
Q Consensus 453 v~~~~P~~~~iaE~~~ 468 (1351)
++...|++++|||.|.
T Consensus 319 ~~~~~p~~~~vgE~~~ 334 (655)
T 3ucq_A 319 ARIVAPAVAFKAEAIV 334 (655)
T ss_dssp HHHHCTTCEEEECCCC
T ss_pred HHHhCCCeEEEEecCC
Confidence 9999999999999984
|
| >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-36 Score=363.08 Aligned_cols=250 Identities=18% Similarity=0.167 Sum_probs=162.1
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc------CcCCCCCCCccccCCCC-CC-
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG------LNEFDGTQACFFHDGPR-GT- 1084 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~------l~~~dg~~~~yf~~~~~-g~- 1084 (1351)
++||| +.|||+|+|+|||++|||+||++||++||+||||+|+||++.++... +..++ ...||+.... ..
T Consensus 78 ~~~GY~~~d~~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~~ 155 (478)
T 2guy_A 78 AYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFS--SQDYFHPFCFIQNY 155 (478)
T ss_dssp CTTSCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCC--SGGGBCCSCBCCCT
T ss_pred CCCCCCcccccccCccCCCHHHHHHHHHHHHHCCCEEEEEECcccCCCCCCcccccccccCCCC--chhhcCCCCcccCC
Confidence 57899 99999999999999999999999999999999999999999865311 11111 1234442211 01
Q ss_pred ------CCCCC------CCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCC
Q psy9001 1085 ------HPLWD------SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 1152 (1351)
Q Consensus 1085 ------~~~w~------~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d 1152 (1351)
...|. ..+||++||+||++|+++++||+++|||||||||+|.+|.
T Consensus 156 ~~~~~~~~~w~g~~~~~~~dln~~~~~V~~~l~~~~~~w~~~~gvDGfR~Da~~~~~----------------------- 212 (478)
T 2guy_A 156 EDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQ----------------------- 212 (478)
T ss_dssp TCHHHHHHSBEECSSEEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSC-----------------------
T ss_pred CCCcccccccccCCCCCCCeeCcCCHHHHHHHHHHHHHHHHhcCCCEEEEeccccCC-----------------------
Confidence 11242 3689999999999999999999999999999999999882
Q ss_pred hhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCC
Q psy9001 1153 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCS 1232 (1351)
Q Consensus 1153 ~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~ 1232 (1351)
..||+++++. |++++|||.|.+.+....++.. +|+.. .+|+.. ..++.++.+..
T Consensus 213 ---~~f~~~~~~~-----~~~~~igE~~~~~~~~~~~~~~---~~~~~---------~~~~~~-----~~~~~~~~~~~- 266 (478)
T 2guy_A 213 ---KDFWPGYNKA-----AGVYCIGEVLDGDPAYTCPYQN---VMDGV---------LNYPIY-----YPLLNAFKSTS- 266 (478)
T ss_dssp ---GGGHHHHHHH-----HTSEEEECCCCSCHHHHGGGGG---TSSEE---------BCHHHH-----HHHHHHHSSTT-
T ss_pred ---HHHHHHHHhc-----CCceEEeeecCCCchhHHhhhc---cCccc---------cCcHHH-----HHHHHHHHcCC-
Confidence 2366666653 7899999999876665544432 12211 112111 12232331100
Q ss_pred CCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccCCc
Q psy9001 1233 HFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPTQS 1312 (1351)
Q Consensus 1233 ~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltspGi 1312 (1351)
.....+. .... . ....+ +. +...++|++|||+.|... .....+++|+|++++||+||+
T Consensus 267 --~~~~~l~----~~~~-----~---~~~~~-~~---~~~~~~f~~nHD~~r~~~----~~~~~~~~~~a~a~~l~~pG~ 324 (478)
T 2guy_A 267 --GSMDDLY----NMIN-----T---VKSDC-PD---STLLGTFVENHDNPRFAS----YTNDIALAKNVAAFIILNDGI 324 (478)
T ss_dssp --CCHHHHH----HHHH-----H---HHHHS-SC---GGGSEECSCCTTSCCGGG----TCCCHHHHHHHHHHHHHSSSE
T ss_pred --CCHHHHH----HHHH-----H---HHhhC-cC---hhhceeeccCCCCccccc----ccCCHHHHHHHHHHHHcCCCc
Confidence 0000000 0000 0 00011 11 111289999999986421 122457789999999999999
Q ss_pred cEEEee-cccCCCCccceeeccCCcc
Q psy9001 1313 PLYLVA-KIEKPCSTREVVKAPLPFG 1337 (1351)
Q Consensus 1313 P~If~g-~~~~~~~~~~~~~~p~~~~ 1337 (1351)
||||+| |+...+......+.|+ |.
T Consensus 325 P~iy~G~E~g~~~~~~~~~r~~~-W~ 349 (478)
T 2guy_A 325 PIIYAGQEQHYAGGNDPANREAT-WL 349 (478)
T ss_dssp EEEETTGGGTCCCCSTTTTCCCG-GG
T ss_pred cEEEeehhhccCCCCCccchhhh-cc
Confidence 999999 6676665555555554 64
|
| >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=371.11 Aligned_cols=325 Identities=15% Similarity=0.122 Sum_probs=205.5
Q ss_pred CCceEEEeecCCcccCCCc-----ccccccccccccceeccCCCcccccccc--cccccCCceEEEe-cCCCCCCCCccc
Q psy9001 889 ENLKIYESHVGICTQEQKC-----ASYEDFVRVVIPRIVKQGDFNNWNREEF--AYKKLDFGKWELV-LPPNPDGDFNNW 960 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~~~-----gty~~f~~~~lp~ik~lG~fn~~~~~~~--~l~~lg~giwel~-ip~~~~g~~Y~~ 960 (1351)
++++|||+|++.|+..... +.|.+.... .+...-|+|+++..+++ +|+++|++.++|+ | |+.
T Consensus 13 ~~~viYqi~~~~F~d~~~~n~~~~~~~dg~~~~--~~~~~gGdl~gi~~kLd~~yLk~LGvtaIwL~Pi--------~~~ 82 (683)
T 3bmv_A 13 STDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTS--LKKYFGGDWQGIINKINDGYLTGMGVTAIWIPQP--------VEN 82 (683)
T ss_dssp TTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCS--TTSBCCCCHHHHHHHHHTSTTGGGTCCEEEECCC--------EEE
T ss_pred ccCcEEEEecccccCCCCCCCCCCcccCCCccc--cccccCcCHHHHHHhcCHHHHHHcCCCEEEeCcc--------ccC
Confidence 8999999999999854221 111111000 11123489999999999 9999997544444 2 000
Q ss_pred ccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHH
Q psy9001 961 NREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLV 1039 (1351)
Q Consensus 961 ~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV 1039 (1351)
... | ....| ...+.++||| +.||++|+|+|||++|||+||
T Consensus 83 ~~~-----------------~------------------~~~~g----~~g~~~~~GYd~~dy~~idp~~Gt~~dfk~Lv 123 (683)
T 3bmv_A 83 IYA-----------------V------------------LPDST----FGGSTSYHGYWARDFKRTNPYFGSFTDFQNLI 123 (683)
T ss_dssp CCC-----------------C------------------EEETT----TEEECSTTSCSEEEEEEECTTTCCHHHHHHHH
T ss_pred ccc-----------------c------------------ccccc----ccCCCCCCCcCcccccccCcccCCHHHHHHHH
Confidence 000 0 00000 0001357999 999999999999999999999
Q ss_pred HHHHHcCCEEEEEeecccccCCcccc--CcC-------------CCCCCCccccCCCCCCCCCC------------CCCC
Q psy9001 1040 DECHKAGLYVLLDVVHSHASKNVLDG--LNE-------------FDGTQACFFHDGPRGTHPLW------------DSRL 1092 (1351)
Q Consensus 1040 ~~aH~~GI~VILDVV~NHts~~~~~~--l~~-------------~dg~~~~yf~~~~~g~~~~w------------~~~d 1092 (1351)
++||++||+||||+|+||++..+... +.. +......||+.... ..| +..+
T Consensus 124 ~~aH~~GikVilD~V~NHts~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~---~~w~~~~~~~y~~~~~~pd 200 (683)
T 3bmv_A 124 NTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFHHYGG---TDFSSYEDGIYRNLFDLAD 200 (683)
T ss_dssp HHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTCCBCCSCB---CCCSSHHHHHHSBSTTEEE
T ss_pred HHHHHCCCEEEEEEcccccccccccCcchhccCccccCCcccccCCCCcccccccCCC---CCcCCcccccccCcCCCCC
Confidence 99999999999999999999877321 100 00011245653321 233 3458
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCC
Q psy9001 1093 FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 1172 (1351)
Q Consensus 1093 lN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd 1172 (1351)
||++||+||++|+++++||++ +||||||||++.+| ...||+++++.+++..|
T Consensus 201 Ln~~np~Vr~~i~~~l~~Wl~-~GVDGfRlDa~~~i--------------------------~~~f~~~~~~~v~~~~~- 252 (683)
T 3bmv_A 201 LNQQNSTIDSYLKSAIKVWLD-MGIDGIRLDAVKHM--------------------------PFGWQKNFMDSILSYRP- 252 (683)
T ss_dssp BCTTSHHHHHHHHHHHHHHHH-TTCCEEEESCGGGS--------------------------CHHHHHHHHHHHHHHSC-
T ss_pred cccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccC--------------------------CHHHHHHHHHHHHhcCC-
Confidence 999999999999999999999 99999999999988 24588999999988765
Q ss_pred eEEEEccCCCCCCcc----cccccCCc-ccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccc
Q psy9001 1173 IITIAEDVSGMPASC----RPVTEGGT-GFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYE 1247 (1351)
Q Consensus 1173 ~ilIaE~~~~~p~~~----~p~~~gg~-GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~ 1247 (1351)
+++|||.|.+.+... .....++. .|| |+.. ..+++++.+... ....+. ..
T Consensus 253 ~~~vgE~~~~~~~~~~~~~~~~~~~~~~~~d-------------f~~~-----~~l~~~~~~~~~---~~~~l~----~~ 307 (683)
T 3bmv_A 253 VFTFGEWFLGTNEIDVNNTYFANESGMSLLD-------------FRFS-----QKVRQVFRDNTD---TMYGLD----SM 307 (683)
T ss_dssp CEEEECCCCCTTCCCHHHHHHHHHSSSEEBC-------------HHHH-----HHHHHHHTSCSS---CHHHHH----HH
T ss_pred ceEEccccCCCcccchhhhhhhccCCCceEC-------------chHH-----HHHHHHHhcCCC---CHHHHH----HH
Confidence 899999986543221 11111111 112 2111 122333311000 000000 00
Q ss_pred cccCCcccccCcccccc-CCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccCCccEEEee-cccCCCC
Q psy9001 1248 TYPEPWNNRRNSIKLYL-PTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCS 1325 (1351)
Q Consensus 1248 ~~~~~~~~r~~s~~~y~-p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~~~ 1325 (1351)
.. . ....|. +.. .++|++|||+.|.. .....+++++|++++||+||+||||+| |+...+.
T Consensus 308 l~-----~---~~~~~~~~~~-----~~~fl~NHD~~R~~-----~~~~~~~~~~a~a~llt~pG~P~IYyG~E~g~~~~ 369 (683)
T 3bmv_A 308 IQ-----S---TASDYNFIND-----MVTFIDNHDMDRFY-----NGGSTRPVEQALAFTLTSRGVPAIYYGTEQYMTGN 369 (683)
T ss_dssp HH-----H---HHHHCTTGGG-----CEECSCCSSSCCSC-----CSSCSHHHHHHHHHHHHSSSEEEEETTGGGTCCCC
T ss_pred HH-----H---HHHhccchhh-----ceeeccCCCCcccc-----cCCCHHHHHHHHHHHHhCCCCCEEEeeeeecccCC
Confidence 00 0 000111 122 28999999998753 112346789999999999999999999 7777777
Q ss_pred ccceeeccCCc
Q psy9001 1326 TREVVKAPLPF 1336 (1351)
Q Consensus 1326 ~~~~~~~p~~~ 1336 (1351)
....+|.||+|
T Consensus 370 ~d~~~R~~~~~ 380 (683)
T 3bmv_A 370 GDPYNRAMMTS 380 (683)
T ss_dssp STTGGGCCCCC
T ss_pred CCccccccCCC
Confidence 67778888884
|
| >2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-35 Score=362.70 Aligned_cols=269 Identities=19% Similarity=0.218 Sum_probs=162.6
Q ss_pred cccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc---CcCCCCCCCcccc--CCCCCC-CCC
Q psy9001 1015 QLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG---LNEFDGTQACFFH--DGPRGT-HPL 1087 (1351)
Q Consensus 1015 ~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~---l~~~dg~~~~yf~--~~~~g~-~~~ 1087 (1351)
+||| ++||++|+|+|||++|||+||++||++||+||||+|+|||+.+|... +...+.....||. ....+. ..+
T Consensus 60 ~~gY~~~dy~~id~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~~~~~f~~~~~~~~~~~~~~y~~~~~~~g~~p~~ 139 (555)
T 2ze0_A 60 DNGYDISDYYAIMDEFGTMDDFDELLAQAHRRGLKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRDGKDGREPNN 139 (555)
T ss_dssp TTTCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEEECSBCCTTSHHHHHHHHCSSSTTGGGBCEECCBTTBCSSC
T ss_pred CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEecccccchhhHHHHhhcCCCCCccccccccCCCCCCCCCc
Confidence 5899 99999999999999999999999999999999999999999987321 1111222233443 211111 111
Q ss_pred C-------------------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCC
Q psy9001 1088 W-------------------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGH 1142 (1351)
Q Consensus 1088 w-------------------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~ 1142 (1351)
| +..+||++||+||++|+++++||++ +||||||||+|.+|.+.. +.......
T Consensus 140 ~~~~f~~~~w~~~~~~~~~~~~~f~~~~pdLn~~np~V~~~l~~~~~~W~~-~gvDGfRlDa~~~i~~~~-~~~~~~~~- 216 (555)
T 2ze0_A 140 WESIFGGSAWQYDERTGQYYLHIFDVKQPDLNWENSEVRQALYEMVNWWLD-KGIDGFRIDAISHIKKKP-GLPDLPNP- 216 (555)
T ss_dssp EECTTSSBSEEEETTTTEEEECSSCTTCCBBCTTCHHHHHHHHHHHHHHHH-HTCCEEEEESGGGSSCCT-TCCCCC---
T ss_pred ccccCCCccceecCCCCceeecccCccCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEcccccccccc-ccccCCcc-
Confidence 1 2358999999999999999999997 799999999999996531 11000000
Q ss_pred cccccC-----CcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccc-cCCccccccccccccccccccccc-
Q psy9001 1143 YDEYFG-----LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVT-EGGTGFDYRLGQYLHQHSILFPRV- 1215 (1351)
Q Consensus 1143 ~~~~~g-----~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~-~gg~GFdy~~~~~~h~~~~~f~~~- 1215 (1351)
....++ .........+++++++.+++. +++++|||.|...+..+..+. ..+.+|+..++..+.. . +...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~-~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~~~f~~~~--~-~~~~~ 292 (555)
T 2ze0_A 217 KGLKYVPSFAGHMNQPGIMEYLRELKEQTFAR-YDIMTVGEANGVTVDEAEQWVGEENGVFNMIFQFEHLG--L-WERRA 292 (555)
T ss_dssp --CCSEECHHHHSSCTTHHHHHHHHHHHTGGG-SSCEEEEECTTCCTTTTHHHHCSSSCSCSEEECCTTCC--C-CCCCC
T ss_pred cccccccccccccCcHHHHHHHHHHHHHhhcc-CCeEEEeccCCCCHHHHHHHhccccccccceeehHHHh--h-hhccc
Confidence 000000 012345678999999988765 499999999966554443333 2233333211110000 0 0000
Q ss_pred ccccC-chhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCccccccc-
Q psy9001 1216 GVEQA-GKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRY- 1293 (1351)
Q Consensus 1216 ~~e~n-~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~- 1293 (1351)
...++ ..++.++. .+.. . .+.. ...++|++|||+.|... ++...
T Consensus 293 ~~~~~~~~l~~~~~-----------------------~~~~------~-~~~~---~~~~~fl~NHD~~R~~s-~~g~~~ 338 (555)
T 2ze0_A 293 DGSIDVRRLKRTLT-----------------------KWQK------G-LENR---GWNALFLENHDLPRSVS-TWGNDR 338 (555)
T ss_dssp --CCCHHHHHHHHH-----------------------HHHH------H-HTTT---CCBEECSCCTTSCCHHH-HTSCSS
T ss_pred cCCCCHHHHHHHHH-----------------------HHHh------h-ccCC---CceeeeecCCCCcchhh-hhCCch
Confidence 00000 11221110 0000 0 0100 01168999999987411 11110
Q ss_pred -CCHHHHHHHHHHHHccCCccEEEee-cccCCC
Q psy9001 1294 -IQTESNMNGFGIQTLPTQSPLYLVA-KIEKPC 1324 (1351)
Q Consensus 1294 -~~~~~~r~A~allltspGiP~If~g-~~~~~~ 1324 (1351)
.+.+++|+|++++||+||+||||+| |+...+
T Consensus 339 ~~~~~~~k~~~~~l~t~pG~P~iy~G~E~G~~~ 371 (555)
T 2ze0_A 339 DYWAESAKALGALYFFMQGTPFIYQGQEIGMTN 371 (555)
T ss_dssp SSHHHHHHHHHHHHHTSSSEEEEETTGGGTCCC
T ss_pred hhhHHHHHHHHHHHHhCCCceEEEeceecCcCC
Confidence 1234789999999999999999999 777766
|
| >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-35 Score=368.93 Aligned_cols=325 Identities=16% Similarity=0.180 Sum_probs=206.0
Q ss_pred CCceEEEeecCCcccCCCc-----ccccccccccccceeccCCCcccccccc--cccccCCceEEEe-cCCCCCCCCccc
Q psy9001 889 ENLKIYESHVGICTQEQKC-----ASYEDFVRVVIPRIVKQGDFNNWNREEF--AYKKLDFGKWELV-LPPNPDGDFNNW 960 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~~~-----gty~~f~~~~lp~ik~lG~fn~~~~~~~--~l~~lg~giwel~-ip~~~~g~~Y~~ 960 (1351)
++++|||+|++.|+..... +.|.+....+ +-..-|+|+++..+++ +|+++|++.++|+ | |+.
T Consensus 13 ~~~viYqi~~~~F~d~~~~n~~~~~~~dg~~~~~--~~~~gGdl~gi~~kLd~~yLk~LGvt~IwL~Pi--------~~~ 82 (686)
T 1d3c_A 13 STDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNL--RLYCGGDWQGIINKINDGYLTGMGVTAIWISQP--------VEN 82 (686)
T ss_dssp TTCCEEEECGGGTCCSCGGGCCCGGGBCTTCCST--TSBCCCCHHHHHHHHHTTTTGGGTCCEEEECCC--------EEE
T ss_pred ccCcEEEEecccccCCCCCcCCCCcccCCCcccc--ccccCcCHHHHHHhcCHHHHHhcCCCEEEeCCc--------ccC
Confidence 7999999999999854221 1111110000 1122489999999999 9999998654444 2 000
Q ss_pred ccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHH
Q psy9001 961 NREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLV 1039 (1351)
Q Consensus 961 ~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV 1039 (1351)
. ..+ ....| ..+.++||| ++||++|+|+|||++|||+||
T Consensus 83 ~-------------------~~~----------------~~~~g-----~~~~~~~GYd~~dy~~idp~~Gt~~dfk~Lv 122 (686)
T 1d3c_A 83 I-------------------YSI----------------INYSG-----VNNTAYHGYWARDFKKTNPAYGTIADFQNLI 122 (686)
T ss_dssp C-------------------CCC----------------EESSS-----CEECCTTSCSEEEEEEECTTTCCHHHHHHHH
T ss_pred C-------------------ccc----------------ccccC-----ccCCCCCCCCcccccccCcccCCHHHHHHHH
Confidence 0 000 00000 002357999 999999999999999999999
Q ss_pred HHHHHcCCEEEEEeecccccCCcccc--Cc-------------CCCCCCCccccCCCCCCCCCC------------CCCC
Q psy9001 1040 DECHKAGLYVLLDVVHSHASKNVLDG--LN-------------EFDGTQACFFHDGPRGTHPLW------------DSRL 1092 (1351)
Q Consensus 1040 ~~aH~~GI~VILDVV~NHts~~~~~~--l~-------------~~dg~~~~yf~~~~~g~~~~w------------~~~d 1092 (1351)
++||++||+||||+|+||++..+... +. .+......||+.... ..| +..+
T Consensus 123 ~~aH~~GI~VilD~V~NHts~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~---~~~~~~~~~~y~~~~~~pD 199 (686)
T 1d3c_A 123 AAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGG---TDFSTTENGIYKNLYDLAD 199 (686)
T ss_dssp HHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTCCBCCSCB---CCSSSHHHHHHSBBTTEEE
T ss_pred HHHHHCCCEEEEEeCcCccccccccccchhhcCccccCCcccccCCCCccCceecCCC---CCcCCCccccccCcCCCCC
Confidence 99999999999999999999876321 10 000111245653321 233 2358
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCC
Q psy9001 1093 FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 1172 (1351)
Q Consensus 1093 lN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd 1172 (1351)
||++||+||++|+++++||++ +||||||||++.+| ...||+++++.+++..|
T Consensus 200 Ln~~np~Vr~~i~~~l~~Wl~-~GVDGfRlDa~~~i--------------------------~~~f~~~~~~~v~~~~~- 251 (686)
T 1d3c_A 200 LNHNNSTVDVYLKDAIKMWLD-LGIDGIRMNAVKHM--------------------------PFGWQKSFMAAVNNYKP- 251 (686)
T ss_dssp BCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGS--------------------------CHHHHHHHHHHHHTTSC-
T ss_pred cccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccC--------------------------CHHHHHHHHHHHHhcCC-
Confidence 999999999999999999999 99999999999988 34588999999988766
Q ss_pred eEEEEccCCCCCCccc----ccccCCc-ccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccc
Q psy9001 1173 IITIAEDVSGMPASCR----PVTEGGT-GFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYE 1247 (1351)
Q Consensus 1173 ~ilIaE~~~~~p~~~~----p~~~gg~-GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~ 1247 (1351)
+++|||.|.+...... ....++. .|| |+.. ..+++++.+... ....+.. .
T Consensus 252 ~~~vgE~~~~~~~~~~~~~~~~~~~~~~~~d-------------f~~~-----~~~~~~~~~~~~---~~~~l~~----~ 306 (686)
T 1d3c_A 252 VFTFGQWFLGVNEVSPENHKFANESGMSLLD-------------FRFA-----QKVRQVFRDNTD---NMYGLKA----M 306 (686)
T ss_dssp CEEEECCCCCTTCCCHHHHHHHHHSSSEEBC-------------HHHH-----HHHHHHHTTCSS---CHHHHHH----H
T ss_pred ceEEeccccCCcccchhhhhhhccCCCceeC-------------cHHH-----HHHHHHHhcCCC---CHHHHHH----H
Confidence 9999998865332210 0011111 122 1111 222333311100 0000000 0
Q ss_pred cccCCcccccCcccccc-CCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccCCccEEEee-cccCCCC
Q psy9001 1248 TYPEPWNNRRNSIKLYL-PTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCS 1325 (1351)
Q Consensus 1248 ~~~~~~~~r~~s~~~y~-p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~~~ 1325 (1351)
.. .....|. +.. .++|++|||+.|... .....+++++|++++||+||+||||+| |+...+.
T Consensus 307 l~--------~~~~~~~~~~~-----~~~fl~nHD~~R~~~----~~~~~~~~~~a~a~llt~pG~P~IyyG~E~g~~~~ 369 (686)
T 1d3c_A 307 LE--------GSAADYAQVDD-----QVTFIDNHDMERFHA----SNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSGG 369 (686)
T ss_dssp HH--------HHHHHCTTGGG-----CEECSCCTTSCCSSC----TTSCHHHHHHHHHHHHTSSSEEEEETTGGGTCCCC
T ss_pred HH--------HHHhhcccccc-----ceeeccCCCcccccc----ccCCHHHHHHHHHHHHhCCCCcEEEecceecccCC
Confidence 00 0000111 112 289999999987522 112346789999999999999999999 7777777
Q ss_pred ccceeeccCCc
Q psy9001 1326 TREVVKAPLPF 1336 (1351)
Q Consensus 1326 ~~~~~~~p~~~ 1336 (1351)
....+|.||++
T Consensus 370 ~dp~~R~~~~~ 380 (686)
T 1d3c_A 370 TDPDNRARIPS 380 (686)
T ss_dssp STTGGGCCCCC
T ss_pred CCcccccCCCC
Confidence 66777888873
|
| >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=358.90 Aligned_cols=212 Identities=18% Similarity=0.248 Sum_probs=156.4
Q ss_pred CCCCCCceEEEEecCC-----ccC--CCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccc
Q psy9001 173 PKKPDNLKIYESHVGI-----CTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRR 245 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~-----ft~--~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~ 245 (1351)
|.++++.+|||++++. |+. ....|+|++|+++ |||||+||||+ |||||||+
T Consensus 117 p~w~~~~viyq~F~w~~~~~~f~~~~~~~gG~~~gi~~~-LdyLk~LGvta----IwL~Pi~~----------------- 174 (599)
T 3bc9_A 117 PDQEVNHTILQAFYWEMNTGEYATEHPEEANLWNLLAER-APELAEAGFTA----VWLPPANK----------------- 174 (599)
T ss_dssp CGGGCCCCEEECCCTTTTSHHHHHHCGGGGGHHHHHHHH-HHHHHHHTCCE----EECCCCSE-----------------
T ss_pred chhhcCceEEEEeeccccccccccCCCCCCCCHHHHHHH-HHHHHHcCCCE----EEECCccc-----------------
Confidence 3466899999976655 742 2335999999998 99999999999 99999553
Q ss_pred cccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHH
Q psy9001 246 YMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYL 325 (1351)
Q Consensus 246 ~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~L 325 (1351)
+ +. ...+|||++.||| ++...|.. . .|||+||+.+|||+|
T Consensus 175 ---~--~s----~~~~~GYd~~dy~---------------------~l~e~~q~--------g--~idp~~Gt~~dfk~L 214 (599)
T 3bc9_A 175 ---G--MA----GIHDVGYGTYDLW---------------------DLGEFDQK--------G--TVRTKYGTKGELENA 214 (599)
T ss_dssp ---E--TT----GGGCCSCSEEETT---------------------CSSCSCBT--------T--BSSBTTBCHHHHHHH
T ss_pred ---C--CC----CCCCCCCChhhcc---------------------cccccccc--------c--ccCCCCCCHHHHHHH
Confidence 2 10 1245999999999 43311110 0 366999999999999
Q ss_pred HHHHHHcCCEEEEEeeccccccC--CcCCcc------------------cCCCCCCcC-------cccC------CC---
Q psy9001 326 VDECHKAGLYVLLDVVHSHASKN--VLDGLN------------------EFDGTQACF-------FHDG------PR--- 369 (1351)
Q Consensus 326 V~~~H~~GI~VILDvV~NH~~~~--~~~~~~------------------~f~g~~~~y-------y~~~------~~--- 369 (1351)
|++||++||+||||+|+||++.. +.|+.. .|.|....| |+.. +.
T Consensus 215 v~~aH~~GI~VilD~V~NH~~~~~~~~wf~~~~~~~~~~~~~~~~w~~~~~pg~~~~Y~~~~~~w~~f~g~d~~~~~~~~ 294 (599)
T 3bc9_A 215 IDALHNNDIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKES 294 (599)
T ss_dssp HHHHHHTTCEEEEEECCSEECSCSEEEEEEBCTTCSSSTTCEEEEEEEBCCTTTTTSSCCCCBCGGGEEEEEEETTTTEE
T ss_pred HHHHHHCCCEEEEEECcCCCCCCcCCccccccccCCCCCcccccccccccCCCCCCCCccCccccccCCCCCCccccccc
Confidence 99999999999999999999742 332211 122221111 1100 00
Q ss_pred C----CCCCCC-----------CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccC
Q psy9001 370 G----THPLWD-----------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 434 (1351)
Q Consensus 370 ~----~~~~w~-----------~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~ 434 (1351)
+ ....|. .++||+++|+||++|+++++||++++||||||||+|.+|
T Consensus 295 ~~f~~~~~~W~~~~~~~~~~~~~pdLn~~np~Vr~~l~~~l~~Wl~e~GVDGfRlDaa~~i------------------- 355 (599)
T 3bc9_A 295 GKYLFDEKSWDWTYNWDEDYLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHI------------------- 355 (599)
T ss_dssp EEEEBTTCCCCCCSSTTCSCCSSEEECTTCHHHHHHHHHHHHHHHHTTCCCEEEETTGGGS-------------------
T ss_pred cccccCCCCcccccCCccccccCCCcCCCCHHHHHHHHHHHHHHHHcCCCCEEEecccccC-------------------
Confidence 0 023443 168999999999999999999999999999999999988
Q ss_pred CCccCchHHHHHHHHHHHHHh-hCCCeEEEEEcCCCCCC
Q psy9001 435 GLNVDTDALIYLMVANKFLHD-KYPEIITIAEDVSGMPA 472 (1351)
Q Consensus 435 ~~~~~~~~~~f~~~~~~~v~~-~~P~~~~iaE~~~~~p~ 472 (1351)
..+||+++++.+++ ..|++++|||.|.+.+.
T Consensus 356 -------~~~f~~~~~~~l~~~~~p~~~~igE~~~~~~~ 387 (599)
T 3bc9_A 356 -------DYRFIDKWMSAVQNSSNRDVFFVGEAWVEDVD 387 (599)
T ss_dssp -------CHHHHHHHHHHHHHTCSSCCEEEECCCCCSHH
T ss_pred -------CHHHHHHHHHHHHHhhCCCeEEEEcccCCCHH
Confidence 23589999999988 68999999999976543
|
| >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-35 Score=369.37 Aligned_cols=324 Identities=14% Similarity=0.134 Sum_probs=205.8
Q ss_pred CCCceEEEeecCCcccCCCc----c----cccccccccccceeccCCCcccccccccccccCCceEEEe-cCCCCCCCCc
Q psy9001 888 PENLKIYESHVGICTQEQKC----A----SYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELV-LPPNPDGDFN 958 (1351)
Q Consensus 888 p~d~iIYE~HV~~~s~~~~~----g----ty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~-ip~~~~g~~Y 958 (1351)
-++++|||++++.|...... | .|.+.... .+...-|+|+++..++++|+++|++.+.|+ |
T Consensus 6 ~~~~viYqI~p~~F~d~d~~n~~~~~~~~~~d~~~~~--~~~~~gGdl~gi~~kLdyLk~LGv~aIwL~Pi--------- 74 (686)
T 1qho_A 6 VKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSK--WKMYWGGDLEGVRQKLPYLKQLGVTTIWLSPV--------- 74 (686)
T ss_dssp CTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCS--TTSBCCCCHHHHHHTHHHHHHHTCCEEEECCC---------
T ss_pred CccCcEEEEeccccCCCCcccCcccccccccCCCccc--cccccCCCHHHHHHhhHHHHhcCCCEEEECcc---------
Confidence 47899999999999754221 1 01110000 111235899999999999999987544443 2
Q ss_pred ccccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHH
Q psy9001 959 NWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKY 1037 (1351)
Q Consensus 959 ~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~ 1037 (1351)
+. . . ..+. ...++++||| +.||++|+|+|||++|||+
T Consensus 75 --------~~-----~----~--------------------~~~~-----~~g~~~~~GYd~~Dy~~idp~~Gt~~df~~ 112 (686)
T 1qho_A 75 --------LD-----N----L--------------------DTLA-----GTDNTGYHGYWTRDFKQIEEHFGNWTTFDT 112 (686)
T ss_dssp --------EE-----E----C--------------------SSCS-----STTCCCTTSCSEEEEEEECTTTCCHHHHHH
T ss_pred --------cc-----C----C--------------------cccc-----cCCCCCcCCcCcccccccCcccCCHHHHHH
Confidence 00 0 0 0000 0123467999 9999999999999999999
Q ss_pred HHHHHHHcCCEEEEEeecccccCCcccc--Cc-------------CCCCCC-CccccCCCCCCCCCC-------------
Q psy9001 1038 LVDECHKAGLYVLLDVVHSHASKNVLDG--LN-------------EFDGTQ-ACFFHDGPRGTHPLW------------- 1088 (1351)
Q Consensus 1038 LV~~aH~~GI~VILDVV~NHts~~~~~~--l~-------------~~dg~~-~~yf~~~~~g~~~~w------------- 1088 (1351)
||++||++||+||||+|+||++..+... +. .+.... ..||+..+. ...|
T Consensus 113 Lv~~aH~~GikVilD~V~NHts~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~f~~~~~--i~~w~~~~~~~y~~~~~ 190 (686)
T 1qho_A 113 LVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDATKGYFHHNGD--ISNWDDRYEAQWKNFTD 190 (686)
T ss_dssp HHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEECSSSCTTTCCBCCSCB--CSCTTCHHHHHHSBCEE
T ss_pred HHHHHHHCCCEEEEEeccccccccccccccccccCccccCCcccccCCCCcccCeeecCCC--cCcCCCCcccceeeccc
Confidence 9999999999999999999999876321 10 000011 345653221 1222
Q ss_pred ----CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHH
Q psy9001 1089 ----DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANK 1164 (1351)
Q Consensus 1089 ----~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~ 1164 (1351)
+..+||++||+||++|+++++||++ +||||||||++.+| ...||+++++
T Consensus 191 ~~~~~~pDLn~~np~Vr~~l~~~~~~Wl~-~GVDGfRlDa~~~i--------------------------~~~f~~~~~~ 243 (686)
T 1qho_A 191 PAGFSLADLSQENGTIAQYLTDAAVQLVA-HGADGLRIDAVKHF--------------------------NSGFSKSLAD 243 (686)
T ss_dssp TTTEEEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGS--------------------------CHHHHHHHHH
T ss_pred CCcCCCCccccCCHHHHHHHHHHHHHHHh-cCCCEEEEeccccC--------------------------CHHHHHHHHH
Confidence 2468999999999999999999999 99999999999988 3458899999
Q ss_pred HHHhhCCCeEEEEccCCCC-CCc-----ccccccCCc-ccccccccccccccccccccccccCchhHhhhccCCCCCCCc
Q psy9001 1165 FLHDKYPEIITIAEDVSGM-PAS-----CRPVTEGGT-GFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGF 1237 (1351)
Q Consensus 1165 ~l~~~~Pd~ilIaE~~~~~-p~~-----~~p~~~gg~-GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf 1237 (1351)
.+++.+| +++|||.|.+. +.. ......++. .|| |+.. ..+++++.+... ..
T Consensus 244 ~v~~~~~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~~~~~d-------------f~~~-----~~~~~~~~~~~~---~~ 301 (686)
T 1qho_A 244 KLYQKKD-IFLVGEWYGDDPGTANHLEKVRYANNSGVNVLD-------------FDLN-----TVIRNVFGTFTQ---TM 301 (686)
T ss_dssp HHHHHCC-CEEEECCCCCCTTSTTHHHHHHHHHHSSCEEBC-------------HHHH-----HHHHHHHTSCSS---CH
T ss_pred HHHhcCC-ceEEeeeecCCCcccchhhhhhhcccCCCeeec-------------cHHH-----HHHHHHHhcCCC---CH
Confidence 9988765 89999998664 211 111111111 122 2211 122333311100 00
Q ss_pred cccCCCcccccccCCcccccCcccccc-CCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccCCccEEE
Q psy9001 1238 NRLDPGTVYETYPEPWNNRRNSIKLYL-PTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPTQSPLYL 1316 (1351)
Q Consensus 1238 ~r~~~~~~~~~~~~~~~~r~~s~~~y~-p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltspGiP~If 1316 (1351)
..+.. ... . ....|. +.. .++|++|||+.|... .....+++++|++++||+||+||||
T Consensus 302 ~~l~~----~l~-----~---~~~~~~~~~~-----~~~fl~NHD~~R~~s----~~~~~~~~~~a~a~llt~pG~P~IY 360 (686)
T 1qho_A 302 YDLNN----MVN-----Q---TGNEYKYKEN-----LITFIDNHDMSRFLS----VNSNKANLHQALAFILTSRGTPSIY 360 (686)
T ss_dssp HHHHH----HHH-----H---HHHHCTTGGG-----CEECSCCTTSCCHHH----HCCCHHHHHHHHHHHHHSSSEEEEE
T ss_pred HHHHH----HHH-----H---HHHhccchhh-----ceeeccCCCCccccc----cCCCHHHHHHHHHHHHcCCCcCEEE
Confidence 00000 000 0 000111 111 289999999976421 1123467899999999999999999
Q ss_pred ee-cccCCCCccceeeccCCc
Q psy9001 1317 VA-KIEKPCSTREVVKAPLPF 1336 (1351)
Q Consensus 1317 ~g-~~~~~~~~~~~~~~p~~~ 1336 (1351)
+| |+...+......|.|||+
T Consensus 361 yG~E~g~~~~~d~~~R~~~~~ 381 (686)
T 1qho_A 361 YGTEQYMAGGNDPYNRGMMPA 381 (686)
T ss_dssp TTGGGTCCCCSTTTTCCCCCC
T ss_pred ecccccccCCCCccccccCCC
Confidence 99 777777666778888883
|
| >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-34 Score=343.16 Aligned_cols=322 Identities=16% Similarity=0.127 Sum_probs=214.2
Q ss_pred CCceEEEEecCCccCCCCCCC-HHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccC
Q psy9001 177 DNLKIYESHVGICTQEQKCAS-YEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 255 (1351)
Q Consensus 177 ~~~vIYE~hvr~ft~~~~~G~-~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~ 255 (1351)
++.+|||++++.|++ .|+ |++|+++ |||||+||||+ |||||||+ + +.
T Consensus 8 ~~~viyq~f~w~~~~---~G~~~~gi~~~-Ldyl~~lGvt~----I~l~Pi~~--------------------~--~~-- 55 (435)
T 1mxg_A 8 EGGVIMQAFYWDVPG---GGIWWDHIRSK-IPEWYEAGISA----IWLPPPSK--------------------G--MS-- 55 (435)
T ss_dssp GTCCEEECCCTTCCC---SSCHHHHHHHH-HHHHHHHTCCE----EECCCCSE--------------------E--TT--
T ss_pred CCcEEEEEEEeccCC---CCCHHHHHHHH-HHHHHHcCCCE----EEeCCccc--------------------C--CC--
Confidence 578999999999875 489 9999998 99999999999 99999553 2 21
Q ss_pred CCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9001 256 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 335 (1351)
Q Consensus 256 s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~ 335 (1351)
..++|||++.||| ++ .+|.++ -.|||+||+++|||+||++||++||+
T Consensus 56 --~~~~~gY~~~dy~---------------------~l-g~~~~~---------~~id~~~Gt~~df~~lv~~~H~~Gi~ 102 (435)
T 1mxg_A 56 --GGYSMGYDPYDYF---------------------DL-GEYYQK---------GTVETRFGSKEELVRLIQTAHAYGIK 102 (435)
T ss_dssp --GGGCCSSSEEETT---------------------CS-SCSCBT---------TBSSCSSCCHHHHHHHHHHHHHTTCE
T ss_pred --CCCCCCcCccccc---------------------cc-cccccc---------CcCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 1235999999999 33 223221 12569999999999999999999999
Q ss_pred EEEEeeccccccCCcCC--------cccCCCCCC-c------CcccCCCCCCC--CC-CCccCCCCCHHHHHHH----HH
Q psy9001 336 VLLDVVHSHASKNVLDG--------LNEFDGTQA-C------FFHDGPRGTHP--LW-DSRLFNYSEIEVLRFL----LS 393 (1351)
Q Consensus 336 VILDvV~NH~~~~~~~~--------~~~f~g~~~-~------yy~~~~~~~~~--~w-~~~~ln~~~p~v~~~l----~~ 393 (1351)
||||+|+||++.++.+. ...|+...+ . .|+........ .+ +.++||++||+||++| .+
T Consensus 103 VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~g~~~~~~dln~~np~V~~~l~~~~~~ 182 (435)
T 1mxg_A 103 VIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNES 182 (435)
T ss_dssp EEEEECCSBCCCCEEEEETTTTEEEEEECTTCTTCCSCCCGGGBSSSSSCSCCSCCCTTSCBBCTTSHHHHHHHTSSTTS
T ss_pred EEEEECcccccCCCcccCCCCCccccccCCCccCCCCccccccCCCCCcCccCCCcccCccccCCCCHHHHHHHHHHHHH
Confidence 99999999999874310 011222100 1 11111100000 11 2478999999999666 68
Q ss_pred HHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCc
Q psy9001 394 NLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPAS 473 (1351)
Q Consensus 394 ~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~ 473 (1351)
+++||++ +||||||||+|.+| ..+||+++++.+ +++++||.|.+.+..
T Consensus 183 ~~~~w~~-~gvDGfR~Da~~~i--------------------------~~~f~~~~~~~~-----~~~~vgE~~~~~~~~ 230 (435)
T 1mxg_A 183 YAAYLRS-IGFDGWRFDYVKGY--------------------------GAWVVRDWLNWW-----GGWAVGEYWDTNVDA 230 (435)
T ss_dssp HHHHHHH-TTCCEEEETTGGGS--------------------------CHHHHHHHHHHH-----CCCEEECCCCSCHHH
T ss_pred HHHHHHH-CCCCEEEhhhhhhc--------------------------cHHHHHHHHHhc-----CceEEEccccCChHH
Confidence 9999998 99999999999987 236888888654 588999999876542
Q ss_pred cccccc--CCCCCCCcCC-----------------------------------c--CCCC--------------------
Q psy9001 474 CRPVTE--GGTGFDYRLE-----------------------------------I--RPDM-------------------- 494 (1351)
Q Consensus 474 ~~~~~~--gg~gfd~~~~-----------------------------------~--~~d~-------------------- 494 (1351)
...... +...|||.+. + .+|+
T Consensus 231 ~~~~~~~~~~~~fd~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~a~a~~lt~~G~P 310 (435)
T 1mxg_A 231 LLSWAYESGAKVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWNKYPAYAFILTYEGQP 310 (435)
T ss_dssp HHHHHHHHTSEEECHHHHHHHHHHHTTTCHHHHHHHHHTTCSSTTTCTTTEEEESCCSSCCCCSCHHHHHHHHHHSSSEE
T ss_pred HHhhhccCCCceeehHHHHHHHHHHhcCCHHHHHHHHhccccccccCHHHhhhhcccCCccchhhHHHHHHHHHcCCCcc
Confidence 111111 1223333210 0 0121
Q ss_pred -------CCCcHHHHHHHHHHhhhcccccccCCcceEeecCCCcEEEEEeC------ceEEEEeCCCCCccccccccccc
Q psy9001 495 -------SDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERA------GLLFAFNFNGTQSFTDYRYCSTQ 561 (1351)
Q Consensus 495 -------~~~sl~~f~k~L~~Lr~~~~~L~~g~~~~~~~~~~~~Vlaf~R~------~ll~v~Nf~~~~~~~~~~~~~~~ 561 (1351)
....+.+++++|+++|+ +|+.|. +..+.. ++++++|.|. .++||+|+++. .. .+.
T Consensus 311 ~iyyG~e~~~~~~~~i~~L~~~r~---al~~g~-~~~~~~-~~~~~~~~R~~~~~~~~~~vv~N~~~~-~~-~~~----- 378 (435)
T 1mxg_A 311 VIFYRDFEEWLNKDKLINLIWIHD---HLAGGS-TTIVYY-DNDELIFVRNGDSRRPGLITYINLSPN-WV-GRW----- 378 (435)
T ss_dssp EEEHHHHHTTSCHHHHHHHHHHHH---HTCCSC-EEEEEE-CSSEEEEEECCCSSCCCEEEEEECSSS-CE-EEE-----
T ss_pred EEEecccccchHHHHHHHHHHHHH---HhccCC-eEEEec-CCCEEEEEEeCCCCCCEEEEEEeCCCC-Ce-EEE-----
Confidence 01223789999999996 677764 333332 3579999995 58999999876 22 223
Q ss_pred CcccccccccccccccceEeee--ccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCc------
Q psy9001 562 SYSTHNTWTWRGSISKLHRVGV--EQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTR------ 633 (1351)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~v--~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpl------ 633 (1351)
|.+ ...|+|+++++. .+|. ..+. . +..+.+.|+|||.
T Consensus 379 -------------------~~v~~~~~~~~~d~~~~----~~~~------~~~~---~---~~~g~~~~~l~~~~~~~~~ 423 (435)
T 1mxg_A 379 -------------------VYVPKFAGACIHEYTGN----LGGW------VDKR---V---DSSGWVYLEAPPHDPANGY 423 (435)
T ss_dssp -------------------EECGGGTTCEEEESSCT----TSSC------CEEE---C---CTTSEEEEEECCEEGGGTE
T ss_pred -------------------EEEEecCCCEEEecCCC----CCCC------ceEE---E---cCCCEEEEEECCccccCCC
Confidence 443 125789988742 1110 0111 1 1223588999999
Q ss_pred -EEEEEEECC
Q psy9001 634 -TGLILTTSP 642 (1351)
Q Consensus 634 -s~~vl~~~~ 642 (1351)
++.||+..+
T Consensus 424 ~s~~v~~~~~ 433 (435)
T 1mxg_A 424 YGYSVWSYCG 433 (435)
T ss_dssp ESEEEEEETT
T ss_pred ceEEEEEecC
Confidence 999998754
|
| >1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=340.49 Aligned_cols=334 Identities=15% Similarity=0.150 Sum_probs=201.3
Q ss_pred CCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchh
Q psy9001 196 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 275 (1351)
Q Consensus 196 G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e 275 (1351)
++|+||++++|||||+||||+ |||||||+ + +.. ...+|||++.+ |
T Consensus 11 w~~~gi~~~lldyL~~LGv~~----I~l~Pi~~--------------------~--~~~---~~~~~gY~~~~-y----- 55 (448)
T 1g94_A 11 WNWQDVAQECEQYLGPKGYAA----VQVSPPNE--------------------H--ITG---SQWWTRYQPVS-Y----- 55 (448)
T ss_dssp CCHHHHHHHHHHTHHHHTCCE----EEECCCSC--------------------B--BCS---SSGGGGGSBSC-S-----
T ss_pred CcHHHHHHHHHHHHHHcCCCE----EEECCccc--------------------c--CCC---CCCcccccccc-c-----
Confidence 679999998679999999999 99999664 2 211 12346998875 4
Q ss_pred hhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCc--
Q psy9001 276 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL-- 353 (1351)
Q Consensus 276 ~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~-- 353 (1351)
+++ |+||+++|||+||++||++||+||||+|+|||+.++..+.
T Consensus 56 ----------------~id-------------------p~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~ 100 (448)
T 1g94_A 56 ----------------ELQ-------------------SRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAG 100 (448)
T ss_dssp ----------------CSC-------------------BTTBCHHHHHHHHHHHHHTTCEEEEEEECSEECSSCEEBTTS
T ss_pred ----------------ccC-------------------CCCCCHHHHHHHHHHHHHCCCEEEEEEeeccccCCCCCCCCC
Confidence 344 9999999999999999999999999999999998763211
Q ss_pred ccCCC-----CCCcCcccCCCCCCC--CC-------------CCccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccc
Q psy9001 354 NEFDG-----TQACFFHDGPRGTHP--LW-------------DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 354 ~~f~g-----~~~~yy~~~~~~~~~--~w-------------~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~ 413 (1351)
..|.. ..+.+|+... ... +| +.++||++||+||++|+++++||+ ++||||||||+|.
T Consensus 101 ~~~~~~~~p~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~dln~~np~Vr~~i~~~~~~w~-~~gvDGfR~D~~~ 177 (448)
T 1g94_A 101 NSFGNKSFPIYSPQDFHESC--TINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYINDLQ-AIGVKGFRFDASK 177 (448)
T ss_dssp CEEBTTBCSSCCGGGBCCCC--BCCTTHHHHCHHHHHHSBSTTCEEBCTTSHHHHHHHHHHHHHHH-HHTCCEEEEETGG
T ss_pred CCCccccCCCCCHHHcCCCC--CcCccccCCcccccceeeccCCCCcCCCCHHHHHHHHHHHHHHH-hcCCCEEeecccc
Confidence 11211 1112343211 011 22 256899999999999999999999 5999999999999
Q ss_pred cccccc---------CC---CCCCCCC--Cc---cccCCCccCchHHHHHHHHHHHHHh---------------hCCCeE
Q psy9001 414 SMLYHN---------HG---CGEGFSG--HY---DEYFGLNVDTDALIYLMVANKFLHD---------------KYPEII 461 (1351)
Q Consensus 414 ~~~~~~---------~~---~~~~f~~--~~---~~~~~~~~~~~~~~f~~~~~~~v~~---------------~~P~~~ 461 (1351)
+|.... .. .++.+.. +. ..+.+.. ..-...|...+++.++. ..|...
T Consensus 178 ~i~~~~~~~~~~~~~~~~~~vgE~~~~~~~~~~~~~y~~~~-~~~~f~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 256 (448)
T 1g94_A 178 HVAASDIQSLMAKVNGSPVVFQEVIDQGGEAVGASEYLSTG-LVTEFKYSTELGNTFRNGSLAWLSNFGEGWGFMPSSSA 256 (448)
T ss_dssp GSCHHHHHHHHHTSCSCCEEEECCCCSSCCSSCGGGGGGGS-EEECHHHHHHHHHHHHHSCGGGGGGTTGGGTCCCGGGE
T ss_pred cCCHHHHHHHHHHhccCCeEEEEeecCCCCcccHHhhcCCC-ceeeccchhhHHHHhcCCCHHHHHHhhhhcCCCChhHc
Confidence 883210 00 1222211 00 1111100 00111222333333321 111110
Q ss_pred -EE-----------E-----E--c-------------CC-CCCCcccccccCCC---CC-CCcC------CcCC-CCCCC
Q psy9001 462 -TI-----------A-----E--D-------------VS-GMPASCRPVTEGGT---GF-DYRL------EIRP-DMSDM 497 (1351)
Q Consensus 462 -~i-----------a-----E--~-------------~~-~~p~~~~~~~~gg~---gf-d~~~------~~~~-d~~~~ 497 (1351)
.+ + + + .+ |.|.|+++.|.|-. |. +.+- .|.. +-...
T Consensus 257 ~~f~~nHD~~r~~~~~g~~l~~~~~~~~~la~a~~l~~~~G~P~iy~G~E~G~~~~~~~p~~r~~~~~~~~~~~~~w~~~ 336 (448)
T 1g94_A 257 VVFVDNHDNQRGHGGAGNVITFEDGRLYDLANVFMLAYPYGYPKVMSSYDFHGDTDAGGPNVPVHNNGNLECFASNWKCE 336 (448)
T ss_dssp EECSCCTTGGGTSSCCTTSCCGGGTHHHHHHHHHHHHSCSSEEEEEECBCCTTCTTCCCCSSCSEETTEECBSSSSBCCG
T ss_pred eEEecCCCCCCCCCCcccccccCCHHHHHHHHHHHHhCCCCeeEEEechhccccCCCCCCccccccccCCcccCCCcccc
Confidence 00 1 0 0 26 88899998887532 11 1111 0211 11223
Q ss_pred cHHHHHHHHHHhhhcccccccCC-cceEeecCCCcEEEEEeC-ceEEEEeCCCCCcccccccccccCccccccccccccc
Q psy9001 498 TVGTFDAAMNTTEERFKWLSADP-GYVSTKHEGDKVIIFERA-GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSI 575 (1351)
Q Consensus 498 sl~~f~k~L~~Lr~~~~~L~~g~-~~~~~~~~~~~Vlaf~R~-~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1351)
++.+++|+|++||+.+. +. ....+..+++++++|.|. .++||+|+++......+.
T Consensus 337 ~l~~~~~~Li~lR~~~~----g~~~~~~~~~~~~~~~af~R~~~~~v~~N~~~~~~~~~~~------------------- 393 (448)
T 1g94_A 337 HRWSYIAGGVDFRNNTA----DNWAVTNWWDNTNNQISFGRGSSGHMAINKEDSTLTATVQ------------------- 393 (448)
T ss_dssp GGSHHHHHHHHHHHHST----TCCCCEEEEECSSSEEEEECGGGEEEEEECSSSCBCCEEE-------------------
T ss_pred cHHHHHHHHHHHHHhcc----CCCceEEEEeCCCCEEEEEcCCcEEEEEECCCCCeEEEEE-------------------
Confidence 58999999999999872 22 223333344689999998 689999999762111222
Q ss_pred ccceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEEC
Q psy9001 576 SKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTTS 641 (1351)
Q Consensus 576 ~~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~~ 641 (1351)
+++| .|+|+.+++++....++.. .+..+. ...+ ..++|+|||.+++||...
T Consensus 394 -----~~l~-~g~~~d~~~g~~~~~~~~~---~g~~~~---v~~~---g~~~~~l~~~s~~vl~~~ 444 (448)
T 1g94_A 394 -----TDMA-SGQYCNVLKGELSADAKSC---SGEVIT---VNSD---GTINLNIGAWDAMAIHKN 444 (448)
T ss_dssp -----CCSC-SEEEECTTTCCBCTTSSCB---SSCEEE---ECTT---SEEECCBCTTEEEEEETT
T ss_pred -----cCCC-CcEEEEeecCcccccCCCC---CCCeEE---ECCC---ceEEEEECCCceEEEEec
Confidence 3444 5789988875322111111 011111 1112 358899999999999864
|
| >1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=341.40 Aligned_cols=162 Identities=15% Similarity=0.157 Sum_probs=121.0
Q ss_pred CCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccccccc
Q psy9001 175 KPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 254 (1351)
Q Consensus 175 ~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~ 254 (1351)
...+.+|++++-. +|++|++++|||||+||||+ |||||||+. +..
T Consensus 7 ~~~~~~i~~~F~w---------~~~gi~~~~ldyL~~LGv~~----I~l~Pi~~~----------------------~~~ 51 (471)
T 1jae_A 7 ASGRNSIVHLFEW---------KWNDIADECERFLQPQGFGG----VQISPPNEY----------------------LVA 51 (471)
T ss_dssp CTTCEEEEEETTC---------CHHHHHHHHHHTTTTTTEEE----EECCCCSCB----------------------BCC
T ss_pred CCCCCeEEEEecC---------CHHHHHHHHHHHHHHcCCCE----EEeCccccc----------------------cCC
Confidence 4567899998763 59999999679999999999 999996652 111
Q ss_pred CCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCC
Q psy9001 255 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 334 (1351)
Q Consensus 255 ~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI 334 (1351)
. ....+|||++.| | +++ |+||+++|||+||++||++||
T Consensus 52 ~-~~~~~~gYd~~d-y---------------------~id-------------------p~~Gt~~d~~~lv~~~h~~Gi 89 (471)
T 1jae_A 52 D-GRPWWERYQPVS-Y---------------------IIN-------------------TRSGDESAFTDMTRRCNDAGV 89 (471)
T ss_dssp T-TCCGGGGGSBCC-S---------------------CSE-------------------ETTEEHHHHHHHHHHHHHTTC
T ss_pred C-CCCccccccccc-c---------------------ccc-------------------CCCCCHHHHHHHHHHHHHCCC
Confidence 0 123456899888 5 455 999999999999999999999
Q ss_pred EEEEEeeccccccCCcCCc---------ccCCCCC--CcCcccCCCCCCCCCC------------CccCCCCCHHHHHHH
Q psy9001 335 YVLLDVVHSHASKNVLDGL---------NEFDGTQ--ACFFHDGPRGTHPLWD------------SRLFNYSEIEVLRFL 391 (1351)
Q Consensus 335 ~VILDvV~NH~~~~~~~~~---------~~f~g~~--~~yy~~~~~~~~~~w~------------~~~ln~~~p~v~~~l 391 (1351)
+||||+|+||++.++..+. ..|.+.. ..+|+.. .....|. .++||++||+||++|
T Consensus 90 ~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~--~~i~~~~~~~~~~~~~~~~~pdLn~~np~V~~~i 167 (471)
T 1jae_A 90 RIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDFHSP--CEVNNYQDADNVRNCELVGLRDLNQGSDYVRGVL 167 (471)
T ss_dssp EEEEEECCSBCCSSCEEBTTSCEEBTTTTBBTTTTBCGGGBCCC--CBCCCTTCHHHHHHSBBTTBCBBCTTSHHHHHHH
T ss_pred EEEEEEecccccCCCCcCCCCCccCccCCcCCCCCCCHhHcCCC--CCccCCCChhhccccccCCCCccCcCCHHHHHHH
Confidence 9999999999998751110 1111110 0123211 1112332 378999999999999
Q ss_pred HHHHHHHHHHcCCCccccccccccc
Q psy9001 392 LSNLRWYLDEYQFDGFRFDGVTSML 416 (1351)
Q Consensus 392 ~~~l~~W~~e~~vDGfR~D~a~~~~ 416 (1351)
+++++||+ ++||||||||+|.+|.
T Consensus 168 ~~~~~~w~-~~gvDGfRlDa~~~i~ 191 (471)
T 1jae_A 168 IDYMNHMI-DLGVAGFRVDAAKHMS 191 (471)
T ss_dssp HHHHHHHH-HTTCCEEEETTGGGSC
T ss_pred HHHHHHHH-HcCCCEEEeechhcCC
Confidence 99999999 5999999999999983
|
| >3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-35 Score=365.81 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=119.3
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCC--CCCccccC-CCC-------
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG--TQACFFHD-GPR------- 1082 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg--~~~~yf~~-~~~------- 1082 (1351)
++||| ++||++|+|+|||++|||+||++||++||+||||+|+|||+.+|........+ ....||.. ++.
T Consensus 136 ~~~GY~~~dy~~vdp~~Gt~~df~~Lv~~aH~~GI~VilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~p~~~~ 215 (644)
T 3czg_A 136 NDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPDRYE 215 (644)
T ss_dssp CTTTTSBSCTTSBCGGGCCHHHHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCHHHHTTBCEESSSHHHHHHH
T ss_pred CCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEecCCcccchhhHHHHhcCCCcccCceecCCCCCCCcchh
Confidence 47899 99999999999999999999999999999999999999999987421111111 11233321 100
Q ss_pred --------C-CCCCC-----------C-----CCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCC
Q psy9001 1083 --------G-THPLW-----------D-----SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGE 1137 (1351)
Q Consensus 1083 --------g-~~~~w-----------~-----~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~ 1137 (1351)
+ ...+| + ..+||++||+||++|+++++||+ ++||||||||++.+|.+....
T Consensus 216 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~f~~~~pdLN~~np~V~~~i~~~~~~wl-~~GvDGfRlDa~~~i~~~~~~--- 291 (644)
T 3czg_A 216 ATLGQVFPHTAPGNFTWVDDTAQWMWTTFYPYQWDLNWSNPAVFGDMALAMLRLA-NLGVEAFRLDSTAYLWKRIGT--- 291 (644)
T ss_dssp HHCCCC------CCEEEETTTTEEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHH-HTTEEEEEEETGGGSCCCTTS---
T ss_pred hcccccCCCCCCCCccccCCCCceEecccccCCCcCCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecccccccccCC---
Confidence 0 00122 1 12899999999999999999999 599999999999988432110
Q ss_pred CCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q psy9001 1138 GFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRP 1189 (1351)
Q Consensus 1138 ~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p 1189 (1351)
. ..+..+...+|+++++.+++.+|++++|||.|.....+..+
T Consensus 292 ~----------~~n~p~~~~~l~~~r~~~~~~~p~~~ligE~~~~~~~~~~y 333 (644)
T 3czg_A 292 D----------CMNQSEAHTLLVALRAVTDIVAPAVVMKAEAIVPMTQLPPY 333 (644)
T ss_dssp C----------SSSCHHHHHHHHHHHHHHHHHCTTCEEEEECCSCGGGSGGG
T ss_pred c----------ccCcHHHHHHHHHHHHHHHHhCCCeEEEEEecCCHHHHHHh
Confidence 0 01124568899999999999999999999999654444443
|
| >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=361.87 Aligned_cols=324 Identities=15% Similarity=0.153 Sum_probs=204.0
Q ss_pred CCceEEEeecCCcccCCCc-----ccccccccccccceeccCCCcccccccc--cccccCCceEEEe-cCCCCCCCCccc
Q psy9001 889 ENLKIYESHVGICTQEQKC-----ASYEDFVRVVIPRIVKQGDFNNWNREEF--AYKKLDFGKWELV-LPPNPDGDFNNW 960 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~~~-----gty~~f~~~~lp~ik~lG~fn~~~~~~~--~l~~lg~giwel~-ip~~~~g~~Y~~ 960 (1351)
++++|||++++.|...... +.|.+-.. -.+...-|+|+++..+++ +|+.+|++.+.|+ | |+
T Consensus 10 ~~~viYqI~p~rF~d~~~~n~~~~~~~~~~~~--~~~~~~gGdl~gi~~kLd~~yLk~LGv~aIwL~Pi--------~~- 78 (680)
T 1cyg_A 10 TSDVVYQIVVDRFVDGNTSNNPSGALFSSGCT--NLRKYCGGDWQGIINKINDGYLTDMGVTAIWISQP--------VE- 78 (680)
T ss_dssp TTCCEEEECGGGTCCSCGGGCCCGGGBCGGGC--STTSBCCCCHHHHHHHHHTSTTTTTTCCEEEECCC--------EE-
T ss_pred ccceEEEEecccccCCCCCcCCCCcccCCCcc--ccccccCcCHHHHHhhcCHHHHHhCCCCEEEeCcc--------cc-
Confidence 7899999999999753221 11111000 011122489999999999 9999997544444 2 00
Q ss_pred ccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHH
Q psy9001 961 NREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLV 1039 (1351)
Q Consensus 961 ~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV 1039 (1351)
. .. .+ ......++++||| +.|||+|+|+|||++|||+||
T Consensus 79 -------------~----~~--------------------~~---~~~~~g~~~~~GY~~~Dy~~idp~~Gt~~df~~Lv 118 (680)
T 1cyg_A 79 -------------N----VF--------------------SV---MNDASGSASYHGYWARDFKKPNPFFGTLSDFQRLV 118 (680)
T ss_dssp -------------E----CC--------------------CC---CSSSSCCCSTTSCSEEEEEEECTTTCCHHHHHHHH
T ss_pred -------------C----cc--------------------cc---ccccCCCCCCCCcCchhccccCcccCCHHHHHHHH
Confidence 0 00 00 0000012467999 999999999999999999999
Q ss_pred HHHHHcCCEEEEEeecccccCCccccCcC---------------CCCCCCccccCCCCCCCCCC------------CCCC
Q psy9001 1040 DECHKAGLYVLLDVVHSHASKNVLDGLNE---------------FDGTQACFFHDGPRGTHPLW------------DSRL 1092 (1351)
Q Consensus 1040 ~~aH~~GI~VILDVV~NHts~~~~~~l~~---------------~dg~~~~yf~~~~~g~~~~w------------~~~d 1092 (1351)
++||++||+||||+|+||++..+...... +......||+.... ..| +..|
T Consensus 119 ~~aH~~GIkVilD~V~NHts~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~---~~~~~~~~~~y~~~~~~pD 195 (680)
T 1cyg_A 119 DAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDANMYFHHNGG---TTFSSLEDGIYRNLFDLAD 195 (680)
T ss_dssp HHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTCCBCCSCB---CCCSSHHHHHSSBSTTEEE
T ss_pred HHHHHCCCEEEEEeCCCCCCcccccCcchhhcCccccCcccccccCCCchhceecCCC---CCcCCCccccccCcCCCCc
Confidence 99999999999999999999876321100 00111245553321 223 3458
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCC
Q psy9001 1093 FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 1172 (1351)
Q Consensus 1093 lN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd 1172 (1351)
||++||+||++|+++++||++ +||||||||++.+| ...||+++++.+++..|
T Consensus 196 Ln~~np~Vr~~i~~~~~~Wl~-~GVDGfRlDa~~~i--------------------------~~~f~~~~~~~v~~~~~- 247 (680)
T 1cyg_A 196 LNHQNPVIDRYLKDAVKMWID-MGIDGIRMDAVKHM--------------------------PFGWQKSLMDEIDNYRP- 247 (680)
T ss_dssp BCTTSHHHHHHHHHHHHHHHT-TTCCEEEESCGGGS--------------------------CSHHHHHHHHHHHHHCC-
T ss_pred cccCCHHHHHHHHHHHHHHHh-CCCCEEEEeccccC--------------------------CHHHHHHHHHHHhhcCC-
Confidence 999999999999999999999 99999999999988 12478889999988765
Q ss_pred eEEEEccCCCCCCcccc----cccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCccccc
Q psy9001 1173 IITIAEDVSGMPASCRP----VTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYET 1248 (1351)
Q Consensus 1173 ~ilIaE~~~~~p~~~~p----~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~ 1248 (1351)
++++||.|.+....... ...++. + .++|+.. ..+++++.+... ....+. ...
T Consensus 248 ~~~vgE~~~~~~~~~~~~~~~~~~~~~--~----------~~df~~~-----~~~~~~~~~~~~---~~~~l~----~~l 303 (680)
T 1cyg_A 248 VFTFGEWFLSENEVDANNHYFANESGM--S----------LLDFRFG-----QKLRQVLRNNSD---NWYGFN----QMI 303 (680)
T ss_dssp CEEEECCCCCTTCCCHHHHHHHHHSSC--E----------EBCHHHH-----HHHHHHHTTCSC---CHHHHH----HHH
T ss_pred cEEEccCCCCCcccchhhhhhhccCCC--c----------eECchHH-----HHHHHHHhcCCC---CHHHHH----HHH
Confidence 89999988653221100 001110 0 1112211 233333321100 000000 000
Q ss_pred ccCCcccccCcccccc-CCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccCCccEEEee-cccCCCCc
Q psy9001 1249 YPEPWNNRRNSIKLYL-PTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCST 1326 (1351)
Q Consensus 1249 ~~~~~~~r~~s~~~y~-p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~~~~ 1326 (1351)
. .....|. +.. .++|++|||+.|... .....+++++|++++||+||+||||+| |+...+..
T Consensus 304 ~--------~~~~~~~~~~~-----~~~fl~NHD~~R~~s----~~~~~~~~~~a~a~llt~pG~P~IYyG~E~g~~~~~ 366 (680)
T 1cyg_A 304 Q--------DTASAYDEVLD-----QVTFIDNHDMDRFMI----DGGDPRKVDMALAVLLTSRGVPNIYYGTEQYMTGNG 366 (680)
T ss_dssp H--------HHHHHCTTGGG-----CEECSCCTTSCCSCC----TTCCTHHHHHHHHHHHHSSSEEEEETTGGGTCCCCS
T ss_pred H--------HHHhhccchhh-----ceEEecCCCcchhcc----cCCCHHHHHHHHHHHHhCCCCCEEEEeecccccCCC
Confidence 0 0000111 112 289999999987522 112236789999999999999999999 77777776
Q ss_pred cceeeccCC
Q psy9001 1327 REVVKAPLP 1335 (1351)
Q Consensus 1327 ~~~~~~p~~ 1335 (1351)
....|.||+
T Consensus 367 dp~~R~~m~ 375 (680)
T 1cyg_A 367 DPNNRKMMS 375 (680)
T ss_dssp TTGGGCCCC
T ss_pred CccccccCc
Confidence 677888887
|
| >1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=343.25 Aligned_cols=276 Identities=16% Similarity=0.125 Sum_probs=189.9
Q ss_pred CCCceEEEEecCCccCCCCCCCH-HHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccccccc
Q psy9001 176 PDNLKIYESHVGICTQEQKCASY-EDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 254 (1351)
Q Consensus 176 ~~~~vIYE~hvr~ft~~~~~G~~-~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~ 254 (1351)
..+.+||+++...+.... -|+| ++++++ |||||+||||+ |||||||+..+. ..+.
T Consensus 14 ~~~~vi~q~F~w~~~~~~-gGd~~~gi~~~-LdyLk~LGvt~----IwL~Pi~e~~~~-------------~~~~----- 69 (527)
T 1gcy_A 14 GGDEIILQGFHWNVVREA-PNDWYNILRQQ-AATIAADGFSA----IWMPVPWRDFSS-------------WSDG----- 69 (527)
T ss_dssp GGCCCEEECCCTTHHHHS-TTTHHHHHHHH-HHHHHHTTCSE----EEECCCSCCCCC-------------BC-------
T ss_pred CCCcEEEEEEEcCCCccc-CCcHHHHHHHH-HHHHHhcCCCE----EEeCCccccccc-------------cccC-----
Confidence 456799998876543222 3999 999998 99999999999 999997752110 0000
Q ss_pred CCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCC
Q psy9001 255 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 334 (1351)
Q Consensus 255 ~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI 334 (1351)
+ ....+|||+ || +++ .+|+||+++|||+||++||++||
T Consensus 70 ~-~~~~~~GY~---~~---------------------~id-----------------~~p~~Gt~~dfk~Lv~~aH~~GI 107 (527)
T 1gcy_A 70 S-KSGGGEGYF---WH---------------------DFN-----------------KNGRYGSDAQLRQAASALGGAGV 107 (527)
T ss_dssp --CCBCCSSTT---CS---------------------SSC-----------------SCSSSCCHHHHHHHHHHHHHTTC
T ss_pred C-CCCCCCCcc---cc---------------------cCC-----------------CCCCCCCHHHHHHHHHHHHHCCC
Confidence 0 012569998 66 222 01899999999999999999999
Q ss_pred EEEEEeeccccccCCcCCcccCCCCCCcCcccC--CC----CCCC---CC--CCccCCCCCHHHHHHHHHHHHHHHHHcC
Q psy9001 335 YVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG--PR----GTHP---LW--DSRLFNYSEIEVLRFLLSNLRWYLDEYQ 403 (1351)
Q Consensus 335 ~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~--~~----~~~~---~w--~~~~ln~~~p~v~~~l~~~l~~W~~e~~ 403 (1351)
+||||+|+||++.++..+.+..+. ...||+.. +. +.+. .+ +.++||++||+||++|+++++||++|+|
T Consensus 108 ~VilD~V~NHt~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~f~~~~~dLn~~np~Vr~~i~~~~~~w~~~~g 186 (527)
T 1gcy_A 108 KVLYDVVPNHMNRGYPDKEINLPA-GQGFWRNDCADPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYG 186 (527)
T ss_dssp EEEEEECCSBCCTTCSSCSCCCCS-SSSCBGGGSCCCSSSCBTTBSSCCSTTSTTBBCTTSHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEEEeecCcCCCCCCccccCCC-cchhcccccCCCCCcccCcccCccccccCCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999987521111111 12344321 11 1111 12 3578999999999999999999999999
Q ss_pred CCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCc---cccccc-
Q psy9001 404 FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPAS---CRPVTE- 479 (1351)
Q Consensus 404 vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~---~~~~~~- 479 (1351)
|||||||+|.+| ..+||+.+++.++ +| +++|||.|.+.+.+ .+....
T Consensus 187 vDGfRlDa~~~i--------------------------~~~f~~~~~~~~~--~p-~~~vgE~~~~~~~~~~~~y~~~~~ 237 (527)
T 1gcy_A 187 AGGFRFDFVRGY--------------------------APERVNSWMTDSA--DN-SFCVGELWKGPSEYPNWDWRNTAS 237 (527)
T ss_dssp EEEEEESCGGGS--------------------------CHHHHHHHHHHHC--TT-SEEEECCCCCGGGSCTTSGGGGSC
T ss_pred CCeEEEeccccC--------------------------CHHHHHHHHHHhc--CC-ceEEEEecCCCCcccccccccccc
Confidence 999999999988 2358888988887 67 88999999765432 000000
Q ss_pred ------------CCCCCCCcC-----------------------------Cc--CCCC----------------------
Q psy9001 480 ------------GGTGFDYRL-----------------------------EI--RPDM---------------------- 494 (1351)
Q Consensus 480 ------------gg~gfd~~~-----------------------------~~--~~d~---------------------- 494 (1351)
...-|||.+ ++ .+|+
T Consensus 238 ~~~~~~~~~~~~~~~~fdf~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~g~~~~~~~~~~~~~ 317 (527)
T 1gcy_A 238 WQQIIKDWSDRAKCPVFDFALKERMQNGSIADWKHGLNGNPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQ 317 (527)
T ss_dssp HHHHHHHHHHHHTSCEECHHHHHHHHHSCGGGGGGSGGGCSSHHHHTTEEECSCCTTTSBCSSGGGBCCSSCCCGGGHHH
T ss_pred hhhHHHHHhhccCCceechHHHHHHHHHHHHhhhhhhcCCccccChhhceEEEeCCCCCCcccccCccccccCChhHHHH
Confidence 001122100 00 0221
Q ss_pred -------------------CCCcHHHHHHHHHHhhhcccccccCCcceEeecCCCcEEEEEeC---ceEEEEeCCCC
Q psy9001 495 -------------------SDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERA---GLLFAFNFNGT 549 (1351)
Q Consensus 495 -------------------~~~sl~~f~k~L~~Lr~~~~~L~~g~~~~~~~~~~~~Vlaf~R~---~ll~v~Nf~~~ 549 (1351)
-+.++.+++|+|++||+++++|+.|. +..+. .++.|++|.|. .+||++|+++.
T Consensus 318 a~a~~lt~~G~P~iy~G~E~~W~l~~~~~~Li~lRk~~~al~~g~-~~~~~-~~~~v~a~~r~~~~~~lv~~N~~~~ 392 (527)
T 1gcy_A 318 AYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGVRADSA-ISFHS-GYSGLVATVSGSQQTLVVALNSDLG 392 (527)
T ss_dssp HHHHHHHSSSEEEEEHHHHHTSSCHHHHHHHHHHHHHHTCCTTCE-EEECT-TSSSEEEEEECSSCEEEEEESCCCC
T ss_pred HHHHHhCCCCcceeecccccCChHHHHHHHHHHHHHhChhhcCCc-eEEEe-cCCCEEEEEecCCCeEEEEECCCCC
Confidence 01123799999999999999999873 33333 34579999994 79999999876
|
| >1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=357.88 Aligned_cols=164 Identities=17% Similarity=0.183 Sum_probs=120.9
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCC--CCCccccCCCC--------
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG--TQACFFHDGPR-------- 1082 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg--~~~~yf~~~~~-------- 1082 (1351)
++||| ++||++|+|+|||++|||+||++||++||+||||+|+|||+.+|........+ ....||...+.
T Consensus 143 ~~~GY~v~dy~~vdp~~Gt~~d~~~Lv~~ah~~GI~VilD~V~NH~s~~~~wf~~~~~g~~~y~d~y~~~~~~~~P~~~~ 222 (628)
T 1g5a_A 143 SDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYD 222 (628)
T ss_dssp STTTTSCSCSSSBCTTTCCHHHHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCGGGTTSBCEESSSHHHHHHT
T ss_pred CCCCcCCcccCCcCccCCCHHHHHHHHHHHHHCCCEEEEEEecCcccccchhHHHHhcCCCccccccccCCCCCCccccc
Confidence 46899 99999999999999999999999999999999999999999988422111112 12234421100
Q ss_pred --------C-CCCC--------C--C-----CCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCC
Q psy9001 1083 --------G-THPL--------W--D-----SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEG 1138 (1351)
Q Consensus 1083 --------g-~~~~--------w--~-----~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~ 1138 (1351)
+ ...+ | + ..+||++||+||++|+++++||+ ++||||||||++.+|.+.. | .
T Consensus 223 ~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~pdLN~~np~V~~~i~~~l~~w~-~~GvDGfRlDa~~~i~k~~-g--~- 297 (628)
T 1g5a_A 223 RTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPWVFRAMAGEMLFLA-NLGVDILRMDAVAFIWKQM-G--T- 297 (628)
T ss_dssp TTCCCSSTTTCSTTEEECTTSCEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHH-TTTCSEEEETTGGGSCCCT-T--S-
T ss_pred ccccccCCCCCCCccccCCCCCEEeccCCCCCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeccccccccc-C--c-
Confidence 0 0011 1 1 13899999999999999999999 5899999999999884321 1 0
Q ss_pred CCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccc
Q psy9001 1139 FSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVT 1191 (1351)
Q Consensus 1139 ~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~ 1191 (1351)
.+ .+..+...+|+++++.+++.+|++++|||.|.+.+.+..++.
T Consensus 298 -------~~--~~~p~~~~~~~~~r~~~~~~~p~~~~igE~~~~~~~~~~y~~ 341 (628)
T 1g5a_A 298 -------SC--ENLPQAHALIRAFNAVMRIAAPAVFFKSEAIVHPDQVVQYIG 341 (628)
T ss_dssp -------CS--SSCHHHHHHHHHHHHHHHHHCTTCEEEECCCSCHHHHGGGBS
T ss_pred -------cc--cCcHHHHHHHHHHHHHHHHhCCCeEEEEEecCCHHHHHHhhC
Confidence 00 123457889999999999999999999999965444444443
|
| >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=331.36 Aligned_cols=183 Identities=17% Similarity=0.164 Sum_probs=138.2
Q ss_pred EecCCc---cCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCcc
Q psy9001 184 SHVGIC---TQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQA 260 (1351)
Q Consensus 184 ~hvr~f---t~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~ 260 (1351)
+.+++| ++.+..|+|++++++ |||||+||||+ |||||||+ + + .
T Consensus 3 v~~~~F~~d~~~d~~G~~~gi~~~-ldyl~~lGv~~----i~l~Pi~~--------------------~--~-------~ 48 (405)
T 1ht6_A 3 VLFQGFNWESWKQSGGWYNMMMGK-VDDIAAAGVTH----VWLPPPSH--------------------S--V-------S 48 (405)
T ss_dssp CEEECCCTTGGGCTTCHHHHHHTT-HHHHHHTTCCE----EEECCCSC--------------------B--S-------S
T ss_pred cEEEeEEcCCCCCCCcCHHHHHHH-HHHHHHcCCCE----EEeCCCcc--------------------C--C-------C
Confidence 456777 345568999999998 99999999999 99999553 2 1 2
Q ss_pred ccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccC-CCCCCHHHHHHHHHHHHHcCCEEEEE
Q psy9001 261 LVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLD 339 (1351)
Q Consensus 261 ~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id-~~~G~~~efk~LV~~~H~~GI~VILD 339 (1351)
+|||++.||| ++ | |+||+++|||+||++||++||+||||
T Consensus 49 ~~gY~~~d~~---------------------~i-------------------d~~~~Gt~~d~~~lv~~~h~~Gi~VilD 88 (405)
T 1ht6_A 49 NEGYMPGRLY---------------------DI-------------------DASKYGNAAELKSLIGALHGKGVQAIAD 88 (405)
T ss_dssp TTSSSBCCTT---------------------CG-------------------GGCTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCccccc---------------------cC-------------------CCccCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4999999999 33 4 88999999999999999999999999
Q ss_pred eeccccccCCcCC---cccCCCCC----CcCc---ccCCC-------CCCCCC----CCccCCCCCHHHHHHHHHHHHHH
Q psy9001 340 VVHSHASKNVLDG---LNEFDGTQ----ACFF---HDGPR-------GTHPLW----DSRLFNYSEIEVLRFLLSNLRWY 398 (1351)
Q Consensus 340 vV~NH~~~~~~~~---~~~f~g~~----~~yy---~~~~~-------~~~~~w----~~~~ln~~~p~v~~~l~~~l~~W 398 (1351)
+|+||++.++... ...|.+.. ..|. ..... +.+..| +.++||+++|+||++|++++++|
T Consensus 89 ~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w 168 (405)
T 1ht6_A 89 IVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWL 168 (405)
T ss_dssp ECCSBCCCSEECTTSCEEECCCSSSSSTTCCCGGGBCTTCTTTCCSCSCCCSSCCCTTSCBBCTTCHHHHHHHHHHHHHH
T ss_pred ECcCcccCCCCCCCCCcccCCCCCcCCCCCCCCccccCCCCCcCCCCCcccCCCCcCcCCccCcCCHHHHHHHHHHHHHH
Confidence 9999999876421 12243321 1111 11001 111112 24789999999999999999999
Q ss_pred HHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q psy9001 399 LDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 470 (1351)
Q Consensus 399 ~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~ 470 (1351)
++|+||||||||+|.+| ..+||+.+.+ +.+| .++|||.|...
T Consensus 169 ~~~~gvDGfR~D~~~~~--------------------------~~~f~~~~~~---~~~p-~~~igE~~~~~ 210 (405)
T 1ht6_A 169 KSDLGFDAWRLDFARGY--------------------------SPEMAKVYID---GTSP-SLAVAEVWDNM 210 (405)
T ss_dssp HHHHCCCEEEETTGGGS--------------------------CHHHHHHHHH---HHCC-SCEEECCCCCC
T ss_pred HhccCCCEEEEeccccC--------------------------CHHHHHHHHH---hhCC-ceEEEEeccCC
Confidence 99999999999999987 1357776644 4467 57899998653
|
| >1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=344.33 Aligned_cols=242 Identities=17% Similarity=0.228 Sum_probs=157.9
Q ss_pred ccccc-cccccc---------ccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccC-CccccCc---------------
Q psy9001 1014 EQLKY-LVDECH---------KAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLN--------------- 1067 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~---------idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~-~~~~~l~--------------- 1067 (1351)
.+||| +.||++ |||+|||++|||+||++||++||+||||+|+|||+. +...++.
T Consensus 54 ~~~GY~~~dy~~~~~~~q~~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~f~~~~~~~~~~~~~~g~ 133 (485)
T 1wpc_A 54 NDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTG 133 (485)
T ss_dssp TCCSCSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEEEEEETTEEEEECSC
T ss_pred CCCCCCeecccccccccccCccCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccccCCCCcCcceeEEeeCcccccccccc
Confidence 47899 899995 999999999999999999999999999999999974 2211110
Q ss_pred ----------CCCCCCC-------ccccCC------CC----------CCCCCCCC--------------CCCCCCCHHH
Q psy9001 1068 ----------EFDGTQA-------CFFHDG------PR----------GTHPLWDS--------------RLFNYSEIEV 1100 (1351)
Q Consensus 1068 ----------~~dg~~~-------~yf~~~------~~----------g~~~~w~~--------------~dlN~~np~V 1100 (1351)
.+.+... .||+.. +. |....|.. .+||++||+|
T Consensus 134 ~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~dln~~np~V 213 (485)
T 1wpc_A 134 EYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEV 213 (485)
T ss_dssp CEEEEEEEEBCCTTTTTSSCCCCBCGGGEEEESCCTTTCCSSCEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHH
T ss_pred ccccccccccCCCCCCCccccCccccccCCCCCcccccccccceeeecCCCCCcccccccccCCccccccCccccCCHHH
Confidence 1222211 133210 00 11344431 5899999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHh-hCCCeEEEEcc
Q psy9001 1101 LRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD-KYPEIITIAED 1179 (1351)
Q Consensus 1101 r~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~-~~Pd~ilIaE~ 1179 (1351)
|++|+++++||++++||||||||+|.+| ...||+++++.|++ ..|++++|||.
T Consensus 214 ~~~l~~~~~~w~~~~gvDGfR~Da~~~i--------------------------~~~f~~~~~~~~~~~~~~~~~~igE~ 267 (485)
T 1wpc_A 214 VNELRNWGVWYTNTLGLDGFRIDAVKHI--------------------------KYSFTRDWINHVRSATGKNMFAVAEF 267 (485)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEETTGGGS--------------------------CHHHHHHHHHHHHHHHTCCCEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCEEEhHhhhcC--------------------------CHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999999999999999999999999988 34588999999988 78999999999
Q ss_pred CCCCCCccccc-ccC---CcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCccc
Q psy9001 1180 VSGMPASCRPV-TEG---GTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNN 1255 (1351)
Q Consensus 1180 ~~~~p~~~~p~-~~g---g~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~ 1255 (1351)
|.+.+..+..+ ... ..+||+.+ +..+++++.+... ..+.+. ..
T Consensus 268 ~~~~~~~~~~y~~~~~~~~~~fd~~~------------------~~~~~~~~~~~~~--~~l~~~-------~~------ 314 (485)
T 1wpc_A 268 WKNDLGAIENYLQKTNWNHSVFDVPL------------------HYNLYNASKSGGN--YDMRNI-------FN------ 314 (485)
T ss_dssp CCSCHHHHHHHHHHTTTCSEEECHHH------------------HHHHHHHHTTTTC--SCGGGT-------TT------
T ss_pred ccCChHHHHHHHhhcCCcceeeCHHH------------------HHHHHHHHccCCc--ccHHHH-------Hh------
Confidence 97654432222 111 12344221 2345555522100 000000 00
Q ss_pred ccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccC-CccEEEee-cccCC
Q psy9001 1256 RRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPT-QSPLYLVA-KIEKP 1323 (1351)
Q Consensus 1256 r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltsp-GiP~If~g-~~~~~ 1323 (1351)
.......|.. .++|++|||+.|... .. ........++|++++||+| |+||||+| |+...
T Consensus 315 --~~~~~~~~~~-----~~~f~~nHD~~r~~~-~~-~~~~~~~~~~a~a~~l~~~~G~P~iy~G~E~g~~ 375 (485)
T 1wpc_A 315 --GTVVQRHPSH-----AVTFVDNHDSQPEEA-LE-SFVEEWFKPLAYALTLTREQGYPSVFYGDYYGIP 375 (485)
T ss_dssp --TCHHHHCGGG-----EEECSCCTTTSTTST-TC-CCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBG
T ss_pred --hhhcccCCCc-----ceEEeccCCCCcccc-cc-ccchhHHHHHHHHHHHhCCCCeeEEEeccccCcC
Confidence 0000011222 289999999987521 11 1111224678999999997 99999999 55543
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=342.47 Aligned_cols=243 Identities=16% Similarity=0.220 Sum_probs=157.8
Q ss_pred ccccc-cccccc---------ccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccC-CccccCc---------------
Q psy9001 1014 EQLKY-LVDECH---------KAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLN--------------- 1067 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~---------idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~-~~~~~l~--------------- 1067 (1351)
.+||| ++||++ |||+|||++|||+||++||++||+||||+|+||++. +...++.
T Consensus 52 ~~~GY~~~dy~~~~~~~~~~~idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~f~~~~~~~~~~~~~~g~ 131 (480)
T 1ud2_A 52 ADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISG 131 (480)
T ss_dssp TCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSC
T ss_pred CCCCcCccchhhcccccccCccCCCCCCHHHHHHHHHHHHHCCCEEEEEEccCccccccccccceeeecCCccccccccc
Confidence 46899 899995 999999999999999999999999999999999974 2211110
Q ss_pred ----------CCCCC---CC----ccccCC------CCC-------CCCCCC--------------CCCCCCCCHHHHHH
Q psy9001 1068 ----------EFDGT---QA----CFFHDG------PRG-------THPLWD--------------SRLFNYSEIEVLRF 1103 (1351)
Q Consensus 1068 ----------~~dg~---~~----~yf~~~------~~g-------~~~~w~--------------~~dlN~~np~Vr~~ 1103 (1351)
.++|. .. .||+.. +.. ....|. .++||++||+||++
T Consensus 132 ~~~~~~w~~~~~pg~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~W~~~~~~~~g~~~~~~~~dLn~~np~V~~~ 211 (480)
T 1ud2_A 132 AYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDE 211 (480)
T ss_dssp CEEEEEEEEBCCGGGTTSSCCCCBCGGGEEEEEEETTTTEEEEEEETTCCCCSSCCCTTSCCCCCSSEEECTTSHHHHHH
T ss_pred ccccccccccccCCCCCCcccCcccccccCCCCCcccccccccccccCCCcccccccccCccccccCCccCCCCHHHHHH
Confidence 11221 11 133211 100 023343 15899999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHh-hCCCeEEEEccCCC
Q psy9001 1104 LLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD-KYPEIITIAEDVSG 1182 (1351)
Q Consensus 1104 lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~-~~Pd~ilIaE~~~~ 1182 (1351)
|+++++||++++||||||||+|.+| ...||+++++.+++ ..|++++|||.|.+
T Consensus 212 l~~~~~~w~~~~gvDGfR~Da~~~i--------------------------~~~f~~~~~~~~~~~~~~~~~~igE~~~~ 265 (480)
T 1ud2_A 212 LKDWGSWFTDELDLDGYRLDAIKHI--------------------------PFWYTSDWVRHQRNEADQDLFVVGEYWKD 265 (480)
T ss_dssp HHHHHHHHHHHHTCSEEEETTGGGS--------------------------CHHHHHHHHHHHHHHCSSCCEEEECCCCS
T ss_pred HHHHHHHHHHccCCCEEEEcchhhC--------------------------CHHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 9999999999999999999999988 34588999999998 78999999999976
Q ss_pred CCCccccccc-CC---cccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccccC
Q psy9001 1183 MPASCRPVTE-GG---TGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRN 1258 (1351)
Q Consensus 1183 ~p~~~~p~~~-gg---~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~ 1258 (1351)
.+.....+.. .+ .+||+ +. +..+++++.+... ..+.+. .. .
T Consensus 266 ~~~~~~~y~~~~~~~~~~~d~-------------~~-----~~~~~~~~~~~~~--~~l~~~-------~~--------~ 310 (480)
T 1ud2_A 266 DVGALEFYLDEMNWEMSLFDV-------------PL-----NYNFYRASQQGGS--YDMRNI-------LR--------G 310 (480)
T ss_dssp CHHHHHHHHHHTTTCSEEECH-------------HH-----HHHHHHHHHHCTT--SCGGGT-------TT--------T
T ss_pred CHHHHHHHHhccCCcceeech-------------HH-----HHHHHHHHhcCCc--ccHHHH-------Hh--------c
Confidence 5543322211 11 12332 21 2344444421100 000000 00 0
Q ss_pred ccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccC-CccEEEee-cccCCC
Q psy9001 1259 SIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPT-QSPLYLVA-KIEKPC 1324 (1351)
Q Consensus 1259 s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltsp-GiP~If~g-~~~~~~ 1324 (1351)
......|.+ .++|++|||+.|... ... .......++|++++||+| |+||||+| |+...+
T Consensus 311 ~~~~~~~~~-----~~~f~~nHD~~r~~~-~~~-~~~~~~~~~a~a~~l~~~~G~P~iy~G~E~g~~g 371 (480)
T 1ud2_A 311 SLVEAHPMH-----AVTFVDNHDTQPGES-LES-WVADWFKPLAYATILTREGGYPNVFYGDYYGIPN 371 (480)
T ss_dssp CHHHHCGGG-----EEECSCCTTTSTTST-TCC-CCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGG
T ss_pred cccccCCCc-----eEEEeccCCCCcccc-ccc-cchhHHHHHHHHHHHHCCCCceEEecchhhCCCC
Confidence 000111222 289999999987521 111 111234689999999997 99999999 655544
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.5e-33 Score=338.92 Aligned_cols=243 Identities=18% Similarity=0.240 Sum_probs=158.9
Q ss_pred ccccc-cccccc---------ccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccC-CccccCc---------------
Q psy9001 1014 EQLKY-LVDECH---------KAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLN--------------- 1067 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~---------idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~-~~~~~l~--------------- 1067 (1351)
.+||| +.||++ |+|+|||++|||+||++||++||+||||+|+||++. +...++.
T Consensus 50 ~~~GY~~~dy~~~~~~~~~~~id~~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~~~d~~~~f~~~~~~~~~~~~~~g~ 129 (483)
T 3bh4_A 50 SDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSE 129 (483)
T ss_dssp TSCSSSEEETTCSSCSCCSSCSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSC
T ss_pred CCCCcccccccccccccccCccCCCCCCHHHHHHHHHHHHHCCCEEEEEEccCcccCcccccceeeeeeCcccccccccc
Confidence 46899 899994 999999999999999999999999999999999974 2211110
Q ss_pred ----------CCCCCC---C----ccccCC------CC---------CCCCCCC--------------CCCCCCCCHHHH
Q psy9001 1068 ----------EFDGTQ---A----CFFHDG------PR---------GTHPLWD--------------SRLFNYSEIEVL 1101 (1351)
Q Consensus 1068 ----------~~dg~~---~----~yf~~~------~~---------g~~~~w~--------------~~dlN~~np~Vr 1101 (1351)
.+.+.. . .||+.. +. +....|. ..+||++||+||
T Consensus 130 ~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~dln~~np~V~ 209 (483)
T 3bh4_A 130 EYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVV 209 (483)
T ss_dssp CEEEEEEEEBCCTTTTTSSCCCCBCGGGEEEEEEETTTTEEEEEEECSTTCCCCSSSCCTTSCCCCCSSEEECTTCHHHH
T ss_pred ccccccccccccCCCCcccccCccccccCCCCCcccccCccccccccCCCCCcccccccccCccccccCCccccCCHHHH
Confidence 122211 1 122210 00 1134443 258999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHh-hCCCeEEEEccC
Q psy9001 1102 RFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD-KYPEIITIAEDV 1180 (1351)
Q Consensus 1102 ~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~-~~Pd~ilIaE~~ 1180 (1351)
++|+++++||++++||||||||+|.+| ...||+++++.+++ ..|++++|||.|
T Consensus 210 ~~l~~~~~~w~~~~gvDGfR~Da~~~i--------------------------~~~f~~~~~~~~~~~~~~~~~~igE~~ 263 (483)
T 3bh4_A 210 AETKKWGIWYANELSLDGFRIDAAKHI--------------------------KFSFLRDWVQAVRQATGKEMFTVAEYW 263 (483)
T ss_dssp HHHHHHHHHHHHHHTCCEEEETTGGGS--------------------------CHHHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEechhcC--------------------------CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999999999999999999999988 34588999999988 689999999999
Q ss_pred CCCCCccccc-cc---CCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccc
Q psy9001 1181 SGMPASCRPV-TE---GGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR 1256 (1351)
Q Consensus 1181 ~~~p~~~~p~-~~---gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r 1256 (1351)
.+.+.....+ .. ...+||+.+. ..+++++.+... ..+.+.- .
T Consensus 264 ~~~~~~~~~y~~~~~~~~~~fd~~~~------------------~~~~~~~~~~~~--~~l~~~~-------~------- 309 (483)
T 3bh4_A 264 QNNAGKLENYLNKTSFNQSVFDVPLH------------------FNLQAASSQGGG--YDMRRLL-------D------- 309 (483)
T ss_dssp CSCHHHHHHHHHHTTTCSEEECHHHH------------------HHHHHHHHTTTC--SCGGGTT-------T-------
T ss_pred CCChHHHHHHHhhcCCCceeecHHHH------------------HHHHHHHhcCCc--ccHHHHH-------h-------
Confidence 7654322222 11 1234443222 334544421100 0000000 0
Q ss_pred cCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccC-CccEEEee-cccCCC
Q psy9001 1257 RNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPT-QSPLYLVA-KIEKPC 1324 (1351)
Q Consensus 1257 ~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltsp-GiP~If~g-~~~~~~ 1324 (1351)
.......|.. .++|++|||+.|... +.........++|++++||+| |+||||+| |+...+
T Consensus 310 -~~~~~~~~~~-----~~~f~~nHD~~r~~~--~~~~~~~~~~~~a~a~~l~~~~G~P~iy~G~E~g~~g 371 (483)
T 3bh4_A 310 -GTVVSRHPEK-----AVTFVENHDTQPGQS--LESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGTKG 371 (483)
T ss_dssp -TCHHHHCGGG-----EEEESCCTTTSTTST--TCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCCCC
T ss_pred -hhhhhcCCcc-----eeeEcccCCCCcccc--ccccchhHHHHHHHHHHHHCCCCeEEEEehhhcCCCC
Confidence 0000011222 289999999987521 111111234678999999997 99999999 666654
|
| >1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-32 Score=331.97 Aligned_cols=237 Identities=15% Similarity=0.133 Sum_probs=155.7
Q ss_pred cccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc-----C----cCCCCCCC--ccccCCCC
Q psy9001 1015 QLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG-----L----NEFDGTQA--CFFHDGPR 1082 (1351)
Q Consensus 1015 ~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~-----l----~~~dg~~~--~yf~~~~~ 1082 (1351)
+||| ++|| +|||+|||++|||+||++||++||+||||+|+||++..+..+ + ..+.+.+. .+|+...
T Consensus 57 ~~gYd~~dy-~idp~~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~- 134 (471)
T 1jae_A 57 WERYQPVSY-IINTRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDFHSPC- 134 (471)
T ss_dssp GGGGSBCCS-CSEETTEEHHHHHHHHHHHHHTTCEEEEEECCSBCCSSCEEBTTSCEEBTTTTBBTTTTBCGGGBCCCC-
T ss_pred ccccccccc-cccCCCCCHHHHHHHHHHHHHCCCEEEEEEecccccCCCCcCCCCCccCccCCcCCCCCCCHhHcCCCC-
Confidence 5899 8885 999999999999999999999999999999999999986211 1 11111111 1233211
Q ss_pred CCCCCC------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCc
Q psy9001 1083 GTHPLW------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN 1150 (1351)
Q Consensus 1083 g~~~~w------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~ 1150 (1351)
....| +.++||++||+||++|+++++||+ ++||||||||+|.+|
T Consensus 135 -~i~~~~~~~~~~~~~~~~~pdLn~~np~V~~~i~~~~~~w~-~~gvDGfRlDa~~~i---------------------- 190 (471)
T 1jae_A 135 -EVNNYQDADNVRNCELVGLRDLNQGSDYVRGVLIDYMNHMI-DLGVAGFRVDAAKHM---------------------- 190 (471)
T ss_dssp -BCCCTTCHHHHHHSBBTTBCBBCTTSHHHHHHHHHHHHHHH-HTTCCEEEETTGGGS----------------------
T ss_pred -CccCCCChhhccccccCCCCccCcCCHHHHHHHHHHHHHHH-HcCCCEEEeechhcC----------------------
Confidence 11233 246899999999999999999999 599999999999988
Q ss_pred CChhHHHHHHHHHHHHHhhC--------CCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCch
Q psy9001 1151 VDTDALIYLMVANKFLHDKY--------PEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGK 1222 (1351)
Q Consensus 1151 ~d~~~~~fl~~~~~~l~~~~--------Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~ 1222 (1351)
...||+++.+.+++.+ |+++++||.|...+....+....+ ++ .+.+|+.. ..
T Consensus 191 ----~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~y~~--~~---------~~~~f~~~-----~~ 250 (471)
T 1jae_A 191 ----SPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGGEAISKNEYTG--FG---------CVLEFQFG-----VS 250 (471)
T ss_dssp ----CHHHHHHHHHTCCCCCGGGTCCTTCCCEEEEECCCCSSSSCCGGGTTT--SS---------EEECHHHH-----HH
T ss_pred ----CHHHHHHHHHHHhhhccccccccCCCceEEEeeecCCCcccchhhhcC--CC---------ceeccHHH-----HH
Confidence 3357888888888764 678999999876544332221111 11 11223322 34
Q ss_pred hHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHH
Q psy9001 1223 YKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNG 1302 (1351)
Q Consensus 1223 ~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A 1302 (1351)
+++++++.. .+..+.. +.. ...+.+. ...++|++|||+.|..+.........+++|+|
T Consensus 251 l~~~~~~~~----~~~~l~~----------~~~----~~~~~~~----~~~~~fl~nHD~~R~~g~~~~~~~~~~~~~la 308 (471)
T 1jae_A 251 LGNAFQGGN----QLKNLAN----------WGP----EWGLLEG----LDAVVFVDNHDNQRTGGSQILTYKNPKPYKMA 308 (471)
T ss_dssp HHHHHTTTS----CGGGGGG----------CSG----GGTCCCG----GGEEECSCCTTHHHHSCTTCCCTTSHHHHHHH
T ss_pred HHHHHhCCC----cHHHHHH----------hhh----hcCCCCh----hheeEEeecCCCCCCCCCcccccCCHHHHHHH
Confidence 555553210 1111100 000 0011111 12289999999976532111112346789999
Q ss_pred HHHHHccC-CccEEEeec
Q psy9001 1303 FGIQTLPT-QSPLYLVAK 1319 (1351)
Q Consensus 1303 ~allltsp-GiP~If~g~ 1319 (1351)
++++||+| |+||||+|+
T Consensus 309 ~a~llt~pyG~P~iy~G~ 326 (471)
T 1jae_A 309 IAFMLAHPYGTTRIMSSF 326 (471)
T ss_dssp HHHHHHSCSSEEEEEECB
T ss_pred HHHHHhCcCCceEEEecc
Confidence 99999999 999999994
|
| >3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.9e-33 Score=351.50 Aligned_cols=166 Identities=14% Similarity=0.140 Sum_probs=122.7
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCC--CCCCCcccc-CCC--------
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF--DGTQACFFH-DGP-------- 1081 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~--dg~~~~yf~-~~~-------- 1081 (1351)
.++|| ++||+.|+|+|||++|||+||++||++||+||||+|+||++.++....... ++....||. ...
T Consensus 141 ~~~GY~~~dy~~i~~~~Gt~~d~~~lv~~~h~~Gi~Vi~D~V~NH~s~~~~wf~~~~~~~~~~~d~y~~~~~~~~~~~~~ 220 (655)
T 3ucq_A 141 NDGGYAVQDYRAVRPDLGTMDDLSALARALRGRGISLVLDLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDRRGPDAFE 220 (655)
T ss_dssp CGGGTSEEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCHHHHTTBCEESSSHHHHHHH
T ss_pred CCCCcCCcCcCccCccCCCHHHHHHHHHHHHHCCCEEEEEeeccccccchHHHHHhhcCCCCCcccEEEcCCCCCCcccc
Confidence 46899 999999999999999999999999999999999999999999873211100 111122221 000
Q ss_pred ---CCC-----CC--CCC------------------CCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCC
Q psy9001 1082 ---RGT-----HP--LWD------------------SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNH 1133 (1351)
Q Consensus 1082 ---~g~-----~~--~w~------------------~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~ 1133 (1351)
... .. .|+ ..+||++||+||++|+++++||++ +||||||||+|++|.+...
T Consensus 221 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~qpDLn~~np~V~~~i~~~l~~w~~-~GvDGfRlDa~~~l~k~~g 299 (655)
T 3ucq_A 221 ATLPEIFPDFAPGNFSWDEEIGEGEGGWVWTTFNSYQWDLNWANPDVFLEFVDIILYLAN-RGVEVFRLDAIAFIWKRLG 299 (655)
T ss_dssp TTCCCSCTTTSCSSEEEETTSSSSSCEEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSCCCTT
T ss_pred ccCccccccCCCCcccccccccccCCceEeccccCCCCccCCCCHHHHHHHHHHHHHHHH-CCCCEEEEechhhccccCC
Confidence 000 00 111 138999999999999999999995 8999999999999954321
Q ss_pred CCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccC
Q psy9001 1134 GCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEG 1193 (1351)
Q Consensus 1134 g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~g 1193 (1351)
. . ..+..+...++++++..+++..|++++|||.|.+....+.+...+
T Consensus 300 ~---~----------~~~~~~~~~~l~~~r~~~~~~~p~~~~vgE~~~~~~~~~~y~~~~ 346 (655)
T 3ucq_A 300 T---D----------CQNQPEVHHLTRALRAAARIVAPAVAFKAEAIVAPADLIHYLGTR 346 (655)
T ss_dssp S---C----------SSSCHHHHHHHHHHHHHHHHHCTTCEEEECCCCCHHHHGGGTCCS
T ss_pred C---c----------cCCcHHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHhCCC
Confidence 1 0 112456789999999999999999999999987655566655443
|
| >3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-32 Score=345.29 Aligned_cols=234 Identities=15% Similarity=0.155 Sum_probs=159.6
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCC-------CCC-CCCC
Q psy9001 1021 DECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH-------PLW-DSRL 1092 (1351)
Q Consensus 1021 Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~-------~~w-~~~d 1092 (1351)
||++|||+|||++|||+||++||++||+||||+|+|| +.++ .++. ..+.||+..+.|.. ..| +..+
T Consensus 309 ~y~~idp~~Gt~edfk~LV~~aH~~GI~VilD~V~Nh-s~~~-~~~~----~~~dwf~~~~dg~~~~~~~~~~~~~~~~d 382 (695)
T 3zss_A 309 GHDSIHPALGTLDDFDHFVTEAGKLGLEIALDFALQC-SPDH-PWVH----KHPEWFHHRPDGTIAHAENPPKKYQDIYP 382 (695)
T ss_dssp CTTSCCTTTCCHHHHHHHHHHHHHTTCEEEEEECCEE-CTTS-THHH----HCGGGSCCCTTSCCCCEEETTEEETTCEE
T ss_pred CccccCcccCCHHHHHHHHHHHHHCCCEEEEEeeccC-Cccc-hhhh----cccceeeecCCCCcccCCCCCcccccccc
Confidence 3999999999999999999999999999999999998 4444 2222 12456654443321 123 3347
Q ss_pred CCCCC--HHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhC
Q psy9001 1093 FNYSE--IEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY 1170 (1351)
Q Consensus 1093 lN~~n--p~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~ 1170 (1351)
||++| |+|+++|+++++||++ +||||||||++.++ +..||+++++.+++.+
T Consensus 383 Ln~~n~~p~V~~~l~~~l~~Wi~-~GVDGfRlD~a~~~--------------------------~~~f~~~~~~~v~~~~ 435 (695)
T 3zss_A 383 IAFDADPDGLATETVRILRHWMD-HGVRIFRVDNPHTK--------------------------PVAFWERVIADINGTD 435 (695)
T ss_dssp CCCSSCHHHHHHHHHHHHHHHHH-TTCCEEEESSGGGS--------------------------CHHHHHHHHHHHHHHC
T ss_pred ccccCCcHHHHHHHHHHHHHHHH-hCCCEEEecCcchh--------------------------hHHHHHHHHHHHHhhC
Confidence 99999 9999999999999998 99999999999866 6789999999999999
Q ss_pred CCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCccccccc
Q psy9001 1171 PEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYP 1250 (1351)
Q Consensus 1171 Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~ 1250 (1351)
|++++|||.|. .+.....+.. .||++.+...... .....+...+ ..+..
T Consensus 436 pd~~~vgE~~~-~p~~~~~l~~--~gfd~~~~y~~~~----------~~~~~l~~~~----------~~l~~-------- 484 (695)
T 3zss_A 436 PDVIFLAEAFT-RPAMMATLAQ--IGFQQSYTYFTWR----------NTKQELTEYL----------TELSG-------- 484 (695)
T ss_dssp TTCEEEECCCS-CHHHHHHHHH--TTCSEEECSGGGC----------CSHHHHHHHH----------HHHTT--------
T ss_pred CCceEEEeecC-ChHHhhhhhc--cCcCceechhhhh----------cchhHHHHHH----------Hhhhh--------
Confidence 99999999984 3433333332 3455432221100 0000111111 00000
Q ss_pred CCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccCCccEEEee-cccCCCCc---
Q psy9001 1251 EPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCST--- 1326 (1351)
Q Consensus 1251 ~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~~~~--- 1326 (1351)
....+. +. ++|++|||+.|. .......++.++++++++|+||+||||+| |+...+..
T Consensus 485 --------~~~~~~--~~-----~~FvdNHD~~R~----~s~~g~~~~~kla~all~tl~GiP~IYyGdE~G~~g~~dp~ 545 (695)
T 3zss_A 485 --------EAASYM--RP-----NFFANTPDILHA----YLQHGGRPAFEVRAVLAATLSPTWGIYSGYELCENTPLREG 545 (695)
T ss_dssp --------GGGGTC--CE-----EEESCBTTBCCH----HHHHHCHHHHHHHHHHHHHHCSEEEEETTGGGTCCCBSSTT
T ss_pred --------hhhhcc--cc-----eecccCCCccch----hcccchHHHHHHHHHHHHhcCCCcEEEcCeeccccCCCCCC
Confidence 000111 11 679999998753 11222346788899999999999999999 66655432
Q ss_pred -------cceeeccCCcc
Q psy9001 1327 -------REVVKAPLPFG 1337 (1351)
Q Consensus 1327 -------~~~~~~p~~~~ 1337 (1351)
.-..+.|++|.
T Consensus 546 ~~ey~d~e~~~r~p~~W~ 563 (695)
T 3zss_A 546 SEEYLDSEKYQLKPRDWT 563 (695)
T ss_dssp CCSBTTCTTSSCCCCCHH
T ss_pred ccccccccccccCCCCcc
Confidence 12457899997
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=9e-33 Score=339.67 Aligned_cols=241 Identities=20% Similarity=0.271 Sum_probs=157.5
Q ss_pred ccccc-cccccc---------ccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccC-CccccCc---------------
Q psy9001 1014 EQLKY-LVDECH---------KAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLN--------------- 1067 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~---------idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~-~~~~~l~--------------- 1067 (1351)
.+||| +.||++ |+|+|||++|||+||++||++||+||||+|+||++. +...++.
T Consensus 53 ~~~GY~~~dy~~l~~f~~~~~idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~d~~~~f~~~~~~~~~~~~~~g~ 132 (515)
T 1hvx_A 53 SDVGYGVYDLYDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISG 132 (515)
T ss_dssp TCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSC
T ss_pred CCCCcCeecccccccccccCccCCCCCCHHHHHHHHHHHHHCCCEEEEEEecCCccCCCcccceeEEEecCccccccccc
Confidence 46899 899996 999999999999999999999999999999999974 2211110
Q ss_pred ----------CCCCCC---C----ccccC-C-----C---------CCCCCCCC--------------CCCCCCCCHHHH
Q psy9001 1068 ----------EFDGTQ---A----CFFHD-G-----P---------RGTHPLWD--------------SRLFNYSEIEVL 1101 (1351)
Q Consensus 1068 ----------~~dg~~---~----~yf~~-~-----~---------~g~~~~w~--------------~~dlN~~np~Vr 1101 (1351)
.+.+.. . .||+. + + .+....|. ..+||++||+||
T Consensus 133 ~~~~~~~~~~~~pg~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~dLn~~np~V~ 212 (515)
T 1hvx_A 133 TYQIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVV 212 (515)
T ss_dssp CEEEEEEEEBCCTTTTTSSCCCCBCGGGEEEEEEETTTTEEEEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHH
T ss_pred ccccccccccccCCCCCccccCcccccccCCCCccccccccccccccCCCCCcccccccccCccccccCCccCCCCHHHH
Confidence 122211 1 12221 0 0 01133443 258999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHh-hCCCeEEEEccC
Q psy9001 1102 RFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD-KYPEIITIAEDV 1180 (1351)
Q Consensus 1102 ~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~-~~Pd~ilIaE~~ 1180 (1351)
++|+++++||++++||||||||+|.+|. ..||+++++.|++ ..|++++|||.|
T Consensus 213 ~~l~~~~~~w~~~~gvDGfRlDaa~~i~--------------------------~~f~~~~~~~v~~~~~~~~~~igE~~ 266 (515)
T 1hvx_A 213 TELKSWGKWYVNTTNIDGFRLDAVKHIK--------------------------FSFFPDWLSYVRSQTGKPLFTVGEYW 266 (515)
T ss_dssp HHHHHHHHHHHHHHCCCEEEETTGGGSC--------------------------TTHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEehhhhcC--------------------------HHHHHHHHHHHHhhcCCCcEEEEEec
Confidence 9999999999999999999999999882 2478999999988 689999999999
Q ss_pred CCCCCccccccc-C---CcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccc
Q psy9001 1181 SGMPASCRPVTE-G---GTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR 1256 (1351)
Q Consensus 1181 ~~~p~~~~p~~~-g---g~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r 1256 (1351)
.+.+.....+.. . ..+||+.+. ..+++++.+... ..+.+.- .
T Consensus 267 ~~~~~~~~~y~~~~~~~~~~fd~~~~------------------~~~~~~~~~~~~--~~l~~~~-------~------- 312 (515)
T 1hvx_A 267 SYDINKLHNYIMKTNGTMSLFDAPLH------------------NKFYTASKSGGT--FDMRTLM-------T------- 312 (515)
T ss_dssp CSCHHHHHHHHHHTTTCSEEECHHHH------------------HHHHHHHHTTTC--SCGGGTT-------T-------
T ss_pred CCChHHHHHHHhccCCcceeecHHHH------------------HHHHHHHhcCCc--hhHHHHH-------H-------
Confidence 876543332221 1 134553322 334444421100 0000000 0
Q ss_pred cCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccC-CccEEEee-cccC
Q psy9001 1257 RNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPT-QSPLYLVA-KIEK 1322 (1351)
Q Consensus 1257 ~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltsp-GiP~If~g-~~~~ 1322 (1351)
.......|.+ .++|++|||+.|... +.........++|++++||+| |+||||+| |+..
T Consensus 313 -~~~~~~~~~~-----~~~fl~nHD~~r~~s--~~~~~~~~~~~la~a~~l~~~~G~P~iyyG~E~G~ 372 (515)
T 1hvx_A 313 -NTLMKDQPTL-----AVTFVDNHDTEPGQA--LQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGI 372 (515)
T ss_dssp -TCHHHHCGGG-----EEEESCCTTTSTTST--TCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCB
T ss_pred -hhHhhcCCcc-----ceEEeccccCCcchh--cccchhhHHHHHHHHHHHhCCCCceEEEeccccCC
Confidence 0000011222 289999999987521 111111234688999999997 99999999 5444
|
| >1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-32 Score=332.06 Aligned_cols=142 Identities=19% Similarity=0.172 Sum_probs=111.3
Q ss_pred Ccccccccccccccc--CCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCC--C----C
Q psy9001 1012 TPEQLKYLVDECHKA--GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP--R----G 1083 (1351)
Q Consensus 1012 sp~~hgY~~Dy~~id--p~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~--~----g 1083 (1351)
++.+|||. ||+|+ |+|||++|||+||++||++||+||||+|+||++.++.......+. ...||+... . +
T Consensus 72 ~~~~~GY~--~~~id~~p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NHt~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~ 148 (527)
T 1gcy_A 72 SGGGEGYF--WHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPA-GQGFWRNDCADPGNYPN 148 (527)
T ss_dssp CBCCSSTT--CSSSCSCSSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCSSCSCCCCS-SSSCBGGGSCCCSSSCB
T ss_pred CCCCCCcc--cccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeecCcCCCCCCccccCCC-cchhcccccCCCCCccc
Confidence 34678998 99999 999999999999999999999999999999999998531111111 123443221 1 1
Q ss_pred CCC---CC--CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHH
Q psy9001 1084 THP---LW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIY 1158 (1351)
Q Consensus 1084 ~~~---~w--~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~f 1158 (1351)
... .| +.++||++||+||++|+++++||++||||||||||+|.+| ...|
T Consensus 149 ~~~~~~~f~~~~~dLn~~np~Vr~~i~~~~~~w~~~~gvDGfRlDa~~~i--------------------------~~~f 202 (527)
T 1gcy_A 149 DCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGY--------------------------APER 202 (527)
T ss_dssp TTBSSCCSTTSTTBBCTTSHHHHHHHHHHHHHHHHHSCEEEEEESCGGGS--------------------------CHHH
T ss_pred CcccCccccccCCccccCCHHHHHHHHHHHHHHHHhcCCCeEEEeccccC--------------------------CHHH
Confidence 111 12 4679999999999999999999999999999999999988 2457
Q ss_pred HHHHHHHHHhhCCCeEEEEccCCCCCC
Q psy9001 1159 LMVANKFLHDKYPEIITIAEDVSGMPA 1185 (1351)
Q Consensus 1159 l~~~~~~l~~~~Pd~ilIaE~~~~~p~ 1185 (1351)
|+++++.++ +| +++|||.|.+.+.
T Consensus 203 ~~~~~~~~~--~p-~~~vgE~~~~~~~ 226 (527)
T 1gcy_A 203 VNSWMTDSA--DN-SFCVGELWKGPSE 226 (527)
T ss_dssp HHHHHHHHC--TT-SEEEECCCCCGGG
T ss_pred HHHHHHHhc--CC-ceEEEEecCCCCc
Confidence 888888886 56 7899999876543
|
| >2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-32 Score=324.58 Aligned_cols=111 Identities=19% Similarity=0.270 Sum_probs=93.2
Q ss_pred cc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCC
Q psy9001 1017 KY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNY 1095 (1351)
Q Consensus 1017 gY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~ 1095 (1351)
+| ++||++|||+|||++|||+||++||++||+||||+|+||++ .| .||. .
T Consensus 65 ~y~~~dy~~idp~~Gt~~d~~~lv~~ah~~Gi~vilD~V~NH~s-~~------------~wF~----------------~ 115 (424)
T 2dh2_A 65 DVAQTDLLQIDPNFGSKEDFDSLLQSAKKKSIRVILDLTPNYRG-EN------------SWFS----------------T 115 (424)
T ss_dssp CSTTEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEECCTTTTS-SS------------TTCS----------------S
T ss_pred CCCcccccccCccCCCHHHHHHHHHHHHHCCCEEEEEECCCcCC-Cc------------cccc----------------c
Confidence 35 78999999999999999999999999999999999999999 43 2442 1
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEE
Q psy9001 1096 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1175 (1351)
Q Consensus 1096 ~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~il 1175 (1351)
.+|+||++|+++++||++ +||||||||++.++. +...|++++++.+++..|+.++
T Consensus 116 q~~~Vr~~~~~~~~~Wl~-~gvDGfRlD~v~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~ 170 (424)
T 2dh2_A 116 QVDTVATKVKDALEFWLQ-AGVDGFQVRDIENLK------------------------DASSFLAEWQNITKGFSEDRLL 170 (424)
T ss_dssp CHHHHHHHHHHHHHHHHH-HTCCEEEECCGGGST------------------------THHHHHHHHHHHHHHHCTTCEE
T ss_pred cCHHHHHHHHHHHHHHHH-cCCCEEEEeccccCC------------------------ccHHHHHHHHHHHHHhCCCcEE
Confidence 358999999999999998 899999999998762 2346889999999999897555
Q ss_pred E-EccCC
Q psy9001 1176 I-AEDVS 1181 (1351)
Q Consensus 1176 I-aE~~~ 1181 (1351)
| +|.|.
T Consensus 171 i~~e~~~ 177 (424)
T 2dh2_A 171 IAGTNSS 177 (424)
T ss_dssp EEECSCC
T ss_pred EEEEecC
Confidence 5 55443
|
| >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-32 Score=341.00 Aligned_cols=240 Identities=16% Similarity=0.205 Sum_probs=154.3
Q ss_pred ccccc-cccccc---------ccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccC-CccccCcC--------------
Q psy9001 1014 EQLKY-LVDECH---------KAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLNE-------------- 1068 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~---------idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~-~~~~~l~~-------------- 1068 (1351)
.+||| +.||++ |+|+|||++|||+||++||++||+||||+|+||++. ++..++..
T Consensus 180 ~~~GYd~~dy~~l~e~~q~g~idp~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NH~~~~~~~~wf~~~~~~~~~~~~~~~~ 259 (599)
T 3bc9_A 180 HDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKA 259 (599)
T ss_dssp GCCSCSEEETTCSSCSCBTTBSSBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEBCTTCSSSTTCEEEE
T ss_pred CCCCCChhhcccccccccccccCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCCCCcCCccccccccCCCCCcccccc
Confidence 45889 889995 999999999999999999999999999999999974 22122111
Q ss_pred -----CCCCCC-------ccccCC------CC---C----CCCCCC-----------CCCCCCCCHHHHHHHHHHHHHHH
Q psy9001 1069 -----FDGTQA-------CFFHDG------PR---G----THPLWD-----------SRLFNYSEIEVLRFLLSNLRWYL 1112 (1351)
Q Consensus 1069 -----~dg~~~-------~yf~~~------~~---g----~~~~w~-----------~~dlN~~np~Vr~~lid~l~yWl 1112 (1351)
+.+... .||+.. +. + ..+.|. ..+||++||+||++|+++++||+
T Consensus 260 w~~~~~pg~~~~Y~~~~~~w~~f~g~d~~~~~~~~~~f~~~~~~W~~~~~~~~~~~~~pdLn~~np~Vr~~l~~~l~~Wl 339 (599)
T 3bc9_A 260 WTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDEKSWDWTYNWDEDYLMGADVDYENEAVQNDVIDWGQWII 339 (599)
T ss_dssp EEEBCCTTTTTSSCCCCBCGGGEEEEEEETTTTEEEEEEBTTCCCCCCSSTTCSCCSSEEECTTCHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCccCccccccCCCCCCccccccccccccCCCCcccccCCccccccCCCcCCCCHHHHHHHHHHHHHHH
Confidence 111110 111100 00 0 023342 15899999999999999999999
Q ss_pred HHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHh-hCCCeEEEEccCCCCCCcccccc
Q psy9001 1113 EEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD-KYPEIITIAEDVSGMPASCRPVT 1191 (1351)
Q Consensus 1113 ~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~-~~Pd~ilIaE~~~~~p~~~~p~~ 1191 (1351)
+++||||||||+|.+| ...||+++++.+++ .+|++++|||.|.+.+..+..+.
T Consensus 340 ~e~GVDGfRlDaa~~i--------------------------~~~f~~~~~~~l~~~~~p~~~~igE~~~~~~~~~~~y~ 393 (599)
T 3bc9_A 340 NNIDFDGFRLDAVKHI--------------------------DYRFIDKWMSAVQNSSNRDVFFVGEAWVEDVDDLKGFL 393 (599)
T ss_dssp HTTCCCEEEETTGGGS--------------------------CHHHHHHHHHHHHHTCSSCCEEEECCCCCSHHHHHHHH
T ss_pred HcCCCCEEEecccccC--------------------------CHHHHHHHHHHHHHhhCCCeEEEEcccCCCHHHHHHHh
Confidence 9999999999999988 23588999999998 68999999999977654433322
Q ss_pred c--C---CcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCC
Q psy9001 1192 E--G---GTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPT 1266 (1351)
Q Consensus 1192 ~--g---g~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~ 1266 (1351)
. + ..+||+.+ +..+++++.+. .+.++-.. +.... .. .|.
T Consensus 394 ~~~~~~~~~~fdf~~------------------~~~~~~~~~g~-----~l~~~~~~---------~~~~~---~~-~p~ 437 (599)
T 3bc9_A 394 DTVGNPDLRVFDFPL------------------RSFFVDMLNGA-----YMADLRNA---------GLVNS---PG-YEN 437 (599)
T ss_dssp HHHCCTTEEEECHHH------------------HHHHHHHTTCC-----CGGGGGSC---------SGGGS---TT-TGG
T ss_pred cccCCccceecChHH------------------HHHHHHHhcch-----hHHHHHHH---------HHhhc---cC-Cch
Confidence 1 1 12344322 13345554210 11111000 00000 00 122
Q ss_pred CCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHH-HccCCccEEEee-cccC
Q psy9001 1267 RTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQ-TLPTQSPLYLVA-KIEK 1322 (1351)
Q Consensus 1267 ~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~all-ltspGiP~If~g-~~~~ 1322 (1351)
.+++|++|||+.|.... ... ...++.++|++++ +++||+||||+| |+..
T Consensus 438 -----~~v~fl~NHD~~R~~s~-~~~-~~~~~~~lA~a~ll~t~pG~P~IyyG~E~G~ 488 (599)
T 3bc9_A 438 -----RAVTFVDNHDTDRDEGS-YTV-SIYSRKYQAYAYILTRAEGVPTVYWKDYYIW 488 (599)
T ss_dssp -----GEEECSCCTTTSCSSSC-SSC-CCCSSHHHHHHHHHHCSSSEEEEEHHHHHTS
T ss_pred -----hheeEecCCCCCccccc-ccc-HhHHHHHHHHHHHHHcCCCceEEEechhhCC
Confidence 22899999999876321 000 0113467787775 578999999999 5544
|
| >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=316.67 Aligned_cols=144 Identities=19% Similarity=0.179 Sum_probs=107.6
Q ss_pred CCCcccccc-cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc---CcCCCCC----CCccc---
Q psy9001 1010 FGTPEQLKY-LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG---LNEFDGT----QACFF--- 1077 (1351)
Q Consensus 1010 ~~sp~~hgY-~~Dy~~id-p~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~---l~~~dg~----~~~yf--- 1077 (1351)
+.++++||| ++||++|+ |+|||++|||+||++||++||+||||+|+||++.++... ...|++. ...|.
T Consensus 44 ~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (405)
T 1ht6_A 44 SHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHM 123 (405)
T ss_dssp SCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCSEECTTSCEEECCCSSSSSTTCCCGGG
T ss_pred ccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHHHCCCEEEEEECcCcccCCCCCCCCCcccCCCCCcCCCCCCCCcc
Confidence 334457999 88999999 999999999999999999999999999999999987421 1112221 11121
Q ss_pred cCCCC-------CCCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccc
Q psy9001 1078 HDGPR-------GTHPLW----DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 1146 (1351)
Q Consensus 1078 ~~~~~-------g~~~~w----~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~ 1146 (1351)
..... +....| +.++||++||+||++|+++++||++|+||||||||+|++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~------------------ 185 (405)
T 1ht6_A 124 ICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDFARGY------------------ 185 (405)
T ss_dssp BCTTCTTTCCSCSCCCSSCCCTTSCBBCTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS------------------
T ss_pred ccCCCCCcCCCCCcccCCCCcCcCCccCcCCHHHHHHHHHHHHHHHhccCCCEEEEeccccC------------------
Confidence 11000 111112 2569999999999999999999999999999999999988
Q ss_pred cCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCC
Q psy9001 1147 FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 1183 (1351)
Q Consensus 1147 ~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~ 1183 (1351)
...||+++.+ +.+| .++|||.|...
T Consensus 186 --------~~~f~~~~~~---~~~p-~~~igE~~~~~ 210 (405)
T 1ht6_A 186 --------SPEMAKVYID---GTSP-SLAVAEVWDNM 210 (405)
T ss_dssp --------CHHHHHHHHH---HHCC-SCEEECCCCCC
T ss_pred --------CHHHHHHHHH---hhCC-ceEEEEeccCC
Confidence 2356666644 4477 57899998654
|
| >1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=322.25 Aligned_cols=237 Identities=13% Similarity=0.109 Sum_probs=150.9
Q ss_pred cccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccC--cCCCC-----CCCccccCCCCCCCC
Q psy9001 1015 QLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL--NEFDG-----TQACFFHDGPRGTHP 1086 (1351)
Q Consensus 1015 ~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l--~~~dg-----~~~~yf~~~~~g~~~ 1086 (1351)
+||| ++| |+|+|+|||++|||+||++||++||+||||+|+|||+..+..+. ..+.. ....+|+......-.
T Consensus 47 ~~gY~~~~-y~idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~ 125 (448)
T 1g94_A 47 WTRYQPVS-YELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHESCTINNS 125 (448)
T ss_dssp GGGGSBSC-SCSCBTTBCHHHHHHHHHHHHHTTCEEEEEEECSEECSSCEEBTTSCEEBTTBCSSCCGGGBCCCCBCCTT
T ss_pred cccccccc-cccCCCCCCHHHHHHHHHHHHHCCCEEEEEEeeccccCCCCCCCCCCCCccccCCCCCHHHcCCCCCcCcc
Confidence 5788 555 69999999999999999999999999999999999999873111 01110 111234321100000
Q ss_pred CC-------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCCh
Q psy9001 1087 LW-------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT 1153 (1351)
Q Consensus 1087 ~w-------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~ 1153 (1351)
+| +.++||++||+||++|+++++||+ ++||||||||+|.+|
T Consensus 126 ~~~~~~~~~~~~~~~~~~dln~~np~Vr~~i~~~~~~w~-~~gvDGfR~D~~~~i------------------------- 179 (448)
T 1g94_A 126 DYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYINDLQ-AIGVKGFRFDASKHV------------------------- 179 (448)
T ss_dssp HHHHCHHHHHHSBSTTCEEBCTTSHHHHHHHHHHHHHHH-HHTCCEEEEETGGGS-------------------------
T ss_pred ccCCcccccceeeccCCCCcCCCCHHHHHHHHHHHHHHH-hcCCCEEeecccccC-------------------------
Confidence 22 256899999999999999999999 689999999999988
Q ss_pred hHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCC
Q psy9001 1154 DALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSH 1233 (1351)
Q Consensus 1154 ~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~ 1233 (1351)
...||++++++++ +++++|||.|.+.+.........+ ++ ....|+.. ..+++++++.
T Consensus 180 -~~~~~~~~~~~~~---~~~~~vgE~~~~~~~~~~~~~y~~--~~---------~~~~f~~~-----~~l~~~~~~~--- 236 (448)
T 1g94_A 180 -AASDIQSLMAKVN---GSPVVFQEVIDQGGEAVGASEYLS--TG---------LVTEFKYS-----TELGNTFRNG--- 236 (448)
T ss_dssp -CHHHHHHHHHTSC---SCCEEEECCCCSSCCSSCGGGGGG--GS---------EEECHHHH-----HHHHHHHHHS---
T ss_pred -CHHHHHHHHHHhc---cCCeEEEEeecCCCCcccHHhhcC--CC---------ceeeccch-----hhHHHHhcCC---
Confidence 2356777777664 489999999976433321111000 00 01223211 2345555311
Q ss_pred CCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCc---ccccccCCHHHHHHHHHHHHccC
Q psy9001 1234 FGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNE---NNMKRYIQTESNMNGFGIQTLPT 1310 (1351)
Q Consensus 1234 ~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~---~r~~~~~~~~~~r~A~allltsp 1310 (1351)
.+..+.. + .. ......|. ..++|++|||+.|+.+ ..+. ....+++|+|++++||+|
T Consensus 237 --~~~~l~~----------~-~~--~~~~~~~~-----~~~~f~~nHD~~r~~~~~g~~l~-~~~~~~~~la~a~~l~~~ 295 (448)
T 1g94_A 237 --SLAWLSN----------F-GE--GWGFMPSS-----SAVVFVDNHDNQRGHGGAGNVIT-FEDGRLYDLANVFMLAYP 295 (448)
T ss_dssp --CGGGGGG----------T-TG--GGTCCCGG-----GEEECSCCTTGGGTSSCCTTSCC-GGGTHHHHHHHHHHHHSC
T ss_pred --CHHHHHH----------h-hh--hcCCCChh-----HceEEecCCCCCCCCCCcccccc-cCCHHHHHHHHHHHHhCC
Confidence 1111110 0 00 00001122 2289999999988721 1111 123478999999999999
Q ss_pred -CccEEEee-cccC
Q psy9001 1311 -QSPLYLVA-KIEK 1322 (1351)
Q Consensus 1311 -GiP~If~g-~~~~ 1322 (1351)
|+||||+| |+..
T Consensus 296 ~G~P~iy~G~E~G~ 309 (448)
T 1g94_A 296 YGYPKVMSSYDFHG 309 (448)
T ss_dssp SSEEEEEECBCCTT
T ss_pred CCeeEEEechhccc
Confidence 99999999 5534
|
| >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-32 Score=325.44 Aligned_cols=224 Identities=18% Similarity=0.169 Sum_probs=144.7
Q ss_pred cccc-ccccc---------cccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc--------CcCCCCC-C--
Q psy9001 1015 QLKY-LVDEC---------HKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG--------LNEFDGT-Q-- 1073 (1351)
Q Consensus 1015 ~hgY-~~Dy~---------~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~--------l~~~dg~-~-- 1073 (1351)
+||| ++||+ .|+|+|||++|||+||++||++||+||||+|+||++.++... ...++.. .
T Consensus 59 ~~gY~~~dy~~lg~~~~~~~id~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (435)
T 1mxg_A 59 SMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGK 138 (435)
T ss_dssp CCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCCEEEEETTTTEEEEEECTTCTTCC
T ss_pred CCCcCcccccccccccccCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcccccCCCcccCCCCCccccccCCCccCCC
Confidence 5889 88999 699999999999999999999999999999999999875310 0111110 0
Q ss_pred --C--ccccCCCCCCC--CCC-CCCCCCCCCHHHHHHH----HHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCC
Q psy9001 1074 --A--CFFHDGPRGTH--PLW-DSRLFNYSEIEVLRFL----LSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGH 1142 (1351)
Q Consensus 1074 --~--~yf~~~~~g~~--~~w-~~~dlN~~np~Vr~~l----id~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~ 1142 (1351)
. ..|+....... ..+ +..+||++||+||++| .++++||++ +||||||||+|++|
T Consensus 139 ~~~~~~~f~~~~~~~~~~g~~~~~~dln~~np~V~~~l~~~~~~~~~~w~~-~gvDGfR~Da~~~i-------------- 203 (435)
T 1mxg_A 139 YTANYLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRS-IGFDGWRFDYVKGY-------------- 203 (435)
T ss_dssp SCCCGGGBSSSSSCSCCSCCCTTSCBBCTTSHHHHHHHTSSTTSHHHHHHH-TTCCEEEETTGGGS--------------
T ss_pred CccccccCCCCCcCccCCCcccCccccCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEhhhhhhc--------------
Confidence 0 11221110000 011 3479999999999666 689999998 99999999999988
Q ss_pred cccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCccccccc--CCcccccccccccccccccccccccccC
Q psy9001 1143 YDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTE--GGTGFDYRLGQYLHQHSILFPRVGVEQA 1220 (1351)
Q Consensus 1143 ~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~--gg~GFdy~~~~~~h~~~~~f~~~~~e~n 1220 (1351)
...||+++++.+ ++++|||.|.+.+...+++.. +..+|||.+..
T Consensus 204 ------------~~~f~~~~~~~~-----~~~~vgE~~~~~~~~~~~~~~~~~~~~fd~~~~~----------------- 249 (435)
T 1mxg_A 204 ------------GAWVVRDWLNWW-----GGWAVGEYWDTNVDALLSWAYESGAKVFDFPLYY----------------- 249 (435)
T ss_dssp ------------CHHHHHHHHHHH-----CCCEEECCCCSCHHHHHHHHHHHTSEEECHHHHH-----------------
T ss_pred ------------cHHHHHHHHHhc-----CceEEEccccCChHHHHhhhccCCCceeehHHHH-----------------
Confidence 245778887754 578999999877653333332 23455543322
Q ss_pred chhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHH
Q psy9001 1221 GKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNM 1300 (1351)
Q Consensus 1221 ~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r 1300 (1351)
.+++++.+. ....+.. +. . .......-.|.+. ++|++|||+.|.. . .+
T Consensus 250 -~l~~~~~~~-----~~~~l~~-~~---~------~~~~~~~~~~~~~-----~~f~~nHD~~r~~--------~---~~ 297 (435)
T 1mxg_A 250 -KMDEAFDNN-----NIPALVY-AL---Q------NGQTVVSRDPFKA-----VTFVANHDTDIIW--------N---KY 297 (435)
T ss_dssp -HHHHHHTTT-----CHHHHHH-HH---H------TTCSSTTTCTTTE-----EEESCCSSCCCCS--------C---HH
T ss_pred -HHHHHHhcC-----CHHHHHH-HH---h------ccccccccCHHHh-----hhhcccCCccchh--------h---HH
Confidence 233333211 0000000 00 0 0000000112222 8999999987532 1 27
Q ss_pred HHHHHHHccCCccEEEeec
Q psy9001 1301 NGFGIQTLPTQSPLYLVAK 1319 (1351)
Q Consensus 1301 ~A~allltspGiP~If~g~ 1319 (1351)
+|++++||+||+||||+|+
T Consensus 298 ~a~a~~lt~~G~P~iyyG~ 316 (435)
T 1mxg_A 298 PAYAFILTYEGQPVIFYRD 316 (435)
T ss_dssp HHHHHHHHSSSEEEEEHHH
T ss_pred HHHHHHHcCCCccEEEecc
Confidence 8999999999999999996
|
| >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=321.60 Aligned_cols=235 Identities=13% Similarity=0.164 Sum_probs=153.9
Q ss_pred cccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCC-----
Q psy9001 1015 QLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW----- 1088 (1351)
Q Consensus 1015 ~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w----- 1088 (1351)
+||| ++||+.++|+|||++|||+||++||++||+||||+|+||++.++.. +.........||+.. +...+|
T Consensus 56 ~~gY~~~~y~~~~~~~G~~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~ 132 (422)
T 1ua7_A 56 YWLYQPTSYQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAA-ISNEVKSIPNWTHGN--TQIKNWSDRWD 132 (422)
T ss_dssp GGGGCEEEEEEEETTTEEHHHHHHHHHHHHTTTCEEEEEECCSBCCSCTTT-SCHHHHTSTTCEEEC--CBCCCTTCHHH
T ss_pred cccccceeeeccCCCCCCHHHHHHHHHHHHHCCCEEEEEeccCcccCCccc-cCccccCCcccccCC--CCCCCcCchhc
Confidence 6899 8999999999999999999999999999999999999999998732 211101123456532 112233
Q ss_pred -------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHH
Q psy9001 1089 -------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMV 1161 (1351)
Q Consensus 1089 -------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~ 1161 (1351)
+..+||+++|+||++|+++++||++ +||||||||+|++|.+... ......||++
T Consensus 133 ~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~-~gvDGfR~D~~~~~~~~~~------------------~~~~~~f~~~ 193 (422)
T 1ua7_A 133 VTQNSLLGLYDWNTQNTQVQSYLKRFLERALN-DGADGFRFDAAKHIELPDD------------------GSYGSQFWPN 193 (422)
T ss_dssp HHHSBBTTBCEECTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCCTTS------------------GGGCCSHHHH
T ss_pred ccccccCCCCccccCCHHHHHHHHHHHHHHHH-cCCCEEEEEhhhhcCccch------------------hhhHHHHHHH
Confidence 2368999999999999999999995 9999999999999842110 0113456776
Q ss_pred HHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccC
Q psy9001 1162 ANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLD 1241 (1351)
Q Consensus 1162 ~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~ 1241 (1351)
++ ..|++++|||.|.+.......+. +.+|+. .+. +...+++++++... ....+.
T Consensus 194 ~~-----~~~~~~~vgE~~~~~~~~~~~y~-~~~~~~------------~~~-----~~~~~~~~~~~~~~---~~~~l~ 247 (422)
T 1ua7_A 194 IT-----NTSAEFQYGEILQDSASRDAAYA-NYMDVT------------ASN-----YGHSIRSALKNRNL---GVSNIS 247 (422)
T ss_dssp HT-----CSSCSEEEECCCCSTTCCHHHHH-TTSEEE------------CHH-----HHHHHHHHHHHTCC---CHHHHS
T ss_pred hh-----cCCCceEEEEeecCCCccHHHHh-hcCCcc------------hhH-----HHHHHHHHHhCCCc---CHHHHh
Confidence 65 47999999999976443222222 111211 011 11334544432210 000010
Q ss_pred CCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHc-cCCccEEEeec
Q psy9001 1242 PGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTL-PTQSPLYLVAK 1319 (1351)
Q Consensus 1242 ~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~alllt-spGiP~If~g~ 1319 (1351)
. +. . ...|. ..++|++|||+.|....+ .........++|++++|+ +||+||||+|+
T Consensus 248 ~----------~~-----~-~~~~~-----~~~~f~~nHD~~r~~~~~-~~~~~~~~~~la~a~ll~~~~G~P~iy~G~ 304 (422)
T 1ua7_A 248 H----------YA-----S-DVSAD-----KLVTWVESHDTYANDDEE-STWMSDDDIRLGWAVIASRSGSTPLFFSRP 304 (422)
T ss_dssp S----------CS-----S-SSCGG-----GEEECSSCHHHHHSTTCS-STTCCHHHHHHHHHHHHTSSSSEEEEECCC
T ss_pred h----------cc-----c-cCChh-----heeEEEecCCCCCCCccc-cccCCHHHHHHHHHHHHhCCCCeeEEecCc
Confidence 0 00 0 00122 228999999997653222 223445678899999999 79999999994
|
| >4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=313.29 Aligned_cols=152 Identities=16% Similarity=0.271 Sum_probs=110.0
Q ss_pred CHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccC-CCCccccCcccccccccchh
Q psy9001 197 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE-SHDQALVGDKTIAFWLMDKE 275 (1351)
Q Consensus 197 ~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~-s~~~~~wGY~~~~y~~~~~e 275 (1351)
+|+.|++++.+||++||||+ |||+| +.|+ .... .....++||++.+ |
T Consensus 20 ~w~~ia~e~~~yl~~~G~~~----v~~~P--------------------~~e~--~~~~~~~~~~~~~Y~~~d-y----- 67 (496)
T 4gqr_A 20 RWVDIALECERYLAPKGFGG----VQVSP--------------------PNEN--VAIYNPFRPWWERYQPVS-Y----- 67 (496)
T ss_dssp CHHHHHHHHHHTTTTTTCCE----EEECC--------------------CSCB--BCCTTTTSCGGGGGSBSC-S-----
T ss_pred CHHHHHHHHHHHHHHhCCCE----EEeCc--------------------cccC--ccCCCCCCCcccccCccC-c-----
Confidence 59999999789999999999 99999 4443 1111 1112334888888 5
Q ss_pred hhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCccc
Q psy9001 276 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 355 (1351)
Q Consensus 276 ~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~ 355 (1351)
+++ ++|||++|||+||++||++||+||||+|+||++.++.+....
T Consensus 68 ----------------~i~-------------------~~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~ 112 (496)
T 4gqr_A 68 ----------------KLC-------------------TRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTS 112 (496)
T ss_dssp ----------------CSC-------------------BTTBCHHHHHHHHHHHHHTTCEEEEEECCSEEEETTSCSBSC
T ss_pred ----------------eeC-------------------CCCCCHHHHHHHHHHHHHCCCEEEEEEccCcCCCcccccccc
Confidence 444 999999999999999999999999999999999876543211
Q ss_pred C-CCC----------CCcC----cccCC----CCCCCCCC------------CccCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy9001 356 F-DGT----------QACF----FHDGP----RGTHPLWD------------SRLFNYSEIEVLRFLLSNLRWYLDEYQF 404 (1351)
Q Consensus 356 f-~g~----------~~~y----y~~~~----~~~~~~w~------------~~~ln~~~p~v~~~l~~~l~~W~~e~~v 404 (1351)
. .+. ...| |.... .+...+|. .++||+.||+||++|++++++|++ +||
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dln~~n~~V~~~l~~~~~~~~~-~gv 191 (496)
T 4gqr_A 113 STCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLID-IGV 191 (496)
T ss_dssp BTTCCCBBTTTTBBTTTTBCGGGBSTTTCCSSSSBCCCTTCHHHHHHSBGGGEEEBCTTSHHHHHHHHHHHHHHHH-HTC
T ss_pred CcCCcccccccccCCCCCCCccccCCCcccCCCCcccccCCcceeEeeecCCCCccccCCHHHHHHHHHHHHHHHh-cCc
Confidence 0 000 0000 11100 11112232 147999999999999999999995 999
Q ss_pred Cccccccccccc
Q psy9001 405 DGFRFDGVTSML 416 (1351)
Q Consensus 405 DGfR~D~a~~~~ 416 (1351)
||||+|+|.+|.
T Consensus 192 DGfR~D~~k~~~ 203 (496)
T 4gqr_A 192 AGFRLDASKHMW 203 (496)
T ss_dssp CEEEETTGGGSC
T ss_pred ceeecccccccc
Confidence 999999999983
|
| >1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-30 Score=319.21 Aligned_cols=147 Identities=12% Similarity=0.060 Sum_probs=108.9
Q ss_pred cccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCc----CCCCCCCccccC----CCCC--
Q psy9001 1015 QLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN----EFDGTQACFFHD----GPRG-- 1083 (1351)
Q Consensus 1015 ~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~----~~dg~~~~yf~~----~~~g-- 1083 (1351)
+||| ++||++|+|+|||++|||+||+ ||+||||+|+|||+.++..... .-++....||.. .+.+
T Consensus 50 ~~GY~~~dy~~idp~~Gt~~df~~Lv~-----Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~~y~~~y~~~~~~~~~~~~ 124 (504)
T 1r7a_A 50 DAGFDPIDHTKVDERLGSWDDVAELSK-----THNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGAT 124 (504)
T ss_dssp STTSSCSEEEEECTTTCCHHHHHHHHT-----TSEEEEEEECSEEETTSHHHHHHHHHGGGSTTGGGBCBHHHHCTTCBC
T ss_pred CCCCCccChhhcCcccCCHHHHHHHHh-----CCEEEEEECCCcCCCcchHHHHHhhcCCCCccccceEeccccCcCCCC
Confidence 7999 9999999999999999999996 9999999999999998732110 111223344431 0110
Q ss_pred --------------CCCC----------CC-----CCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCC
Q psy9001 1084 --------------THPL----------WD-----SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHG 1134 (1351)
Q Consensus 1084 --------------~~~~----------w~-----~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g 1134 (1351)
...+ |+ .++||++||+||++|+++++||+ ++||||||||++.+|.+....
T Consensus 125 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~f~~~~pdLn~~np~Vr~~i~~~~~~W~-~~gvDGfR~Da~~~~~~~~~~ 203 (504)
T 1r7a_A 125 EEDLAGIYRPRPGLPFTHYKFAGKTRLVWVSFTPQQVDIDTDSDKGWEYLMSIFDQMA-ASHVSYIRLDAVGYGAKEAGT 203 (504)
T ss_dssp HHHHHTSCCSSSSCSEEEEEETTEEEEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHH-HTTCCEEEEETGGGSCCCTTS
T ss_pred CcchhhhcCCCCCCCCCCceEcCCceEEECccCCCCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEcccccccccCCC
Confidence 0111 21 25899999999999999999998 799999999999988543110
Q ss_pred CCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCC
Q psy9001 1135 CGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1182 (1351)
Q Consensus 1135 ~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~ 1182 (1351)
.. ....+.+.+++++++.+++ |++++|||.|..
T Consensus 204 ---~~----------~~~~~~~~~l~~~~~~~~~--~~~~~igE~~~~ 236 (504)
T 1r7a_A 204 ---SC----------FMTPKTFKLISRLREEGVK--RGLEILIEVHSY 236 (504)
T ss_dssp ---CS----------SSCHHHHHHHHHHHHHHHH--TTCEEEECCCSC
T ss_pred ---cc----------cCchhHHHHHHHHHHHhCc--CCcEEEEEeccc
Confidence 00 0124577888999988876 899999999865
|
| >1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=309.91 Aligned_cols=191 Identities=12% Similarity=0.062 Sum_probs=137.2
Q ss_pred ecCCccCCCCCCCHHHHHHhhhH-HHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccC
Q psy9001 185 HVGICTQEQKCASYEDFVRVVIP-RIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVG 263 (1351)
Q Consensus 185 hvr~ft~~~~~G~~~gi~~~~L~-yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wG 263 (1351)
.+++|.+...-|+|++|+++ |+ |||+| ||+ |||||||+ ++ + ..+||
T Consensus 6 ~~~sf~d~~~gg~~~~i~~~-ld~yL~~L-v~~----IwL~Pi~~-------------------~~--~------~~~~G 52 (504)
T 1r7a_A 6 QLITYADRLGDGTIKSMTDI-LRTRFDGV-YDG----VHILPFFT-------------------PF--D------GADAG 52 (504)
T ss_dssp EEEECSSSBSSSSHHHHHHH-HHHHSTTT-CCE----EEECCCEE-------------------CS--S------SSSTT
T ss_pred eeeeeEeccCCCCHHHHHHH-HHHHHHHH-hCe----EEECCccc-------------------CC--C------CCCCC
Confidence 35556433225899999998 97 99999 999 99999551 22 1 13599
Q ss_pred cccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9001 264 DKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHS 343 (1351)
Q Consensus 264 Y~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~N 343 (1351)
|+++||+ +++ |+|||.+|||+||+ ||+||||+|+|
T Consensus 53 Y~~~dy~---------------------~id-------------------p~~Gt~~df~~Lv~-----Gi~VilD~V~N 87 (504)
T 1r7a_A 53 FDPIDHT---------------------KVD-------------------ERLGSWDDVAELSK-----THNIMVDAIVN 87 (504)
T ss_dssp SSCSEEE---------------------EEC-------------------TTTCCHHHHHHHHT-----TSEEEEEEECS
T ss_pred CCccChh---------------------hcC-------------------cccCCHHHHHHHHh-----CCEEEEEECCC
Confidence 9999999 777 99999999999996 99999999999
Q ss_pred ccccCCcCCcccC----CCCCCcCccc-C---CCC----------------CCCCC----------C-----CccCCCCC
Q psy9001 344 HASKNVLDGLNEF----DGTQACFFHD-G---PRG----------------THPLW----------D-----SRLFNYSE 384 (1351)
Q Consensus 344 H~~~~~~~~~~~f----~g~~~~yy~~-~---~~~----------------~~~~w----------~-----~~~ln~~~ 384 (1351)
||+.++.+..... ++....||.. . +.+ .+..| . .++||++|
T Consensus 88 H~s~~~~~f~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~f~~~~pdLn~~n 167 (504)
T 1r7a_A 88 HMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKTRLVWVSFTPQQVDIDTDS 167 (504)
T ss_dssp EEETTSHHHHHHHHHGGGSTTGGGBCBHHHHCTTCBCHHHHHTSCCSSSSCSEEEEEETTEEEEEECSSSTTEEEBCTTS
T ss_pred cCCCcchHHHHHhhcCCCCccccceEeccccCcCCCCCcchhhhcCCCCCCCCCCceEcCCceEEECccCCCCCccCCCC
Confidence 9999875432110 1111234431 0 000 01112 1 26899999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEE
Q psy9001 385 IEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 464 (1351)
Q Consensus 385 p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~ia 464 (1351)
|+||++|+++++||+ ++||||||||+|.+|.... + ..+ ....+...+++++++.+++ |++++||
T Consensus 168 p~Vr~~i~~~~~~W~-~~gvDGfR~Da~~~~~~~~-~--~~~----------~~~~~~~~~l~~~~~~~~~--~~~~~ig 231 (504)
T 1r7a_A 168 DKGWEYLMSIFDQMA-ASHVSYIRLDAVGYGAKEA-G--TSC----------FMTPKTFKLISRLREEGVK--RGLEILI 231 (504)
T ss_dssp HHHHHHHHHHHHHHH-HTTCCEEEEETGGGSCCCT-T--SCS----------SSCHHHHHHHHHHHHHHHH--TTCEEEE
T ss_pred HHHHHHHHHHHHHHH-HcCCCEEEEcccccccccC-C--Ccc----------cCchhHHHHHHHHHHHhCc--CCcEEEE
Confidence 999999999999998 6999999999999884321 0 000 0113456778888888866 7999999
Q ss_pred EcCCC
Q psy9001 465 EDVSG 469 (1351)
Q Consensus 465 E~~~~ 469 (1351)
|.|..
T Consensus 232 E~~~~ 236 (504)
T 1r7a_A 232 EVHSY 236 (504)
T ss_dssp CCCSC
T ss_pred Eeccc
Confidence 98854
|
| >4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-27 Score=284.80 Aligned_cols=174 Identities=16% Similarity=0.181 Sum_probs=120.9
Q ss_pred CCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCE
Q psy9001 970 LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLY 1048 (1351)
Q Consensus 970 ~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~ 1048 (1351)
.+.||+++|+||...... ......+.++|| .+| |+|+|+|||++|||+||++||++||+
T Consensus 33 ~~~G~~~v~~~P~~e~~~-------------------~~~~~~~~~~~Y~~~d-y~i~~~~Gt~~df~~lv~~aH~~Gi~ 92 (496)
T 4gqr_A 33 APKGFGGVQVSPPNENVA-------------------IYNPFRPWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVGVR 92 (496)
T ss_dssp TTTTCCEEEECCCSCBBC-------------------CTTTTSCGGGGGSBSC-SCSCBTTBCHHHHHHHHHHHHHTTCE
T ss_pred HHhCCCEEEeCccccCcc-------------------CCCCCCCcccccCccC-ceeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 367888888877643210 011123457899 778 58999999999999999999999999
Q ss_pred EEEEeecccccCCccccCcCCCCCCCcc-----------------ccCCC----CCCCCCCC------------CCCCCC
Q psy9001 1049 VLLDVVHSHASKNVLDGLNEFDGTQACF-----------------FHDGP----RGTHPLWD------------SRLFNY 1095 (1351)
Q Consensus 1049 VILDVV~NHts~~~~~~l~~~dg~~~~y-----------------f~~~~----~g~~~~w~------------~~dlN~ 1095 (1351)
||||+|+||++.++...... +....+ |+... .+...+|. ..|||+
T Consensus 93 VilD~V~NH~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dln~ 170 (496)
T 4gqr_A 93 IYVDAVINHMCGNAVSAGTS--STCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLAL 170 (496)
T ss_dssp EEEEECCSEEEETTSCSBSC--BTTCCCBBTTTTBBTTTTBCGGGBSTTTCCSSSSBCCCTTCHHHHHHSBGGGEEEBCT
T ss_pred EEEEEccCcCCCcccccccc--CcCCcccccccccCCCCCCCccccCCCcccCCCCcccccCCcceeEeeecCCCCcccc
Confidence 99999999999876322110 000011 11000 01112221 137999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhC-----
Q psy9001 1096 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY----- 1170 (1351)
Q Consensus 1096 ~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~----- 1170 (1351)
+||+||++|+++++||++ +||||||+|+|++| ...+++.+...+++..
T Consensus 171 ~n~~V~~~l~~~~~~~~~-~gvDGfR~D~~k~~--------------------------~~~~~~~~~~~~~~~~~~~~~ 223 (496)
T 4gqr_A 171 EKDYVRSKIAEYMNHLID-IGVAGFRLDASKHM--------------------------WPGDIKAILDKLHNLNSNWFP 223 (496)
T ss_dssp TSHHHHHHHHHHHHHHHH-HTCCEEEETTGGGS--------------------------CHHHHHHHHTTCCCCCTTTSC
T ss_pred CCHHHHHHHHHHHHHHHh-cCcceeeccccccc--------------------------chHHHHHHHHHHHhhccchhc
Confidence 999999999999999995 89999999999988 3456677777766544
Q ss_pred --CCeEEEEccCCCCCCccccccc
Q psy9001 1171 --PEIITIAEDVSGMPASCRPVTE 1192 (1351)
Q Consensus 1171 --Pd~ilIaE~~~~~p~~~~p~~~ 1192 (1351)
++..+++|.+........+...
T Consensus 224 ~~~~~~~~~e~~~~~~~~~~~~~~ 247 (496)
T 4gqr_A 224 AGSKPFIYQEVIDLGGEPIKSSDY 247 (496)
T ss_dssp TTCCCEEEECCCCCSSSSCCGGGG
T ss_pred ccCcceEEeeeeccCccccchhhh
Confidence 4578899988766655555443
|
| >1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-24 Score=269.07 Aligned_cols=171 Identities=19% Similarity=0.254 Sum_probs=129.9
Q ss_pred CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccch
Q psy9001 195 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 274 (1351)
Q Consensus 195 ~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~ 274 (1351)
.|+|++++++ |||||+||||+ |||+|||+ + . . .++|||+++||+
T Consensus 13 gGtf~gi~~~-LdYLk~LGVta----IwLsPi~~--------------------~--~-~----gs~hGYdv~Dy~---- 56 (720)
T 1iv8_A 13 NFNFGDVIDN-LWYFXDLGVSH----LYLSPVLM--------------------A--S-P----GSNHGYDVIDHS---- 56 (720)
T ss_dssp TBCHHHHHHT-HHHHHHHTCCE----EEECCCEE--------------------E--C-T----TCSSCCSEEEEE----
T ss_pred CCCHHHHHHH-HHHHHhCCCCE----EEECCccc--------------------C--C-C----CCCCCCCCccCC----
Confidence 5899999998 99999999999 99999553 2 1 1 246999999999
Q ss_pred hhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc--cCCcCC
Q psy9001 275 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS--KNVLDG 352 (1351)
Q Consensus 275 e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~--~~~~~~ 352 (1351)
+++ |+||+.+||++||++||++||+||||+|+||++ .++.|.
T Consensus 57 -----------------~Id-------------------p~lGt~edfk~LV~aaH~~GIkVIlDvV~NHta~~~~~~wf 100 (720)
T 1iv8_A 57 -----------------RIN-------------------DELGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVNSLNWRL 100 (720)
T ss_dssp -----------------EEC-------------------TTTTHHHHHHHHHHHHHHTTCEEEEEECCSEEECCTTCHHH
T ss_pred -----------------CcC-------------------ccCCCHHHHHHHHHHHHHCCCEEEEEeccccccCccccHHH
Confidence 777 999999999999999999999999999999999 554321
Q ss_pred c------------ccC-------------------------------C-CC-CCcCcccC-C-------------CCCC-
Q psy9001 353 L------------NEF-------------------------------D-GT-QACFFHDG-P-------------RGTH- 372 (1351)
Q Consensus 353 ~------------~~f-------------------------------~-g~-~~~yy~~~-~-------------~~~~- 372 (1351)
. ..| + |. ...||+.. + ...+
T Consensus 101 ~d~l~~G~~s~y~d~f~~~~~~g~~~~P~~g~~yg~~l~~g~l~~~~d~g~~~~~Yy~~~fp~~~~~~~l~~~~~~q~yr 180 (720)
T 1iv8_A 101 MDVLXMGXXSXYYTYFDFFPEDDKIRLPILGEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIYDTLQKQNYT 180 (720)
T ss_dssp HHHHHHGGGSTTGGGBCBCTTCSSEEEEEESSCHHHHHHTTCEEEEECSSCEEEEETTEEEECSCCCSSHHHHHTTSSEE
T ss_pred HHhhhcccccccccceeecCCCCcccCCcccccccccccccceeeeecCCCcchhhccccCCcCccccchhhhhhcccee
Confidence 0 000 0 00 01222210 0 0000
Q ss_pred -------CCCC-------CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCcc
Q psy9001 373 -------PLWD-------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV 438 (1351)
Q Consensus 373 -------~~w~-------~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~ 438 (1351)
.+|. .++||++||+|+++|++++++| ||||||||++.+|.
T Consensus 181 l~~W~~~lNyr~f~d~~~L~dLn~enP~V~~~i~d~l~~W----GVDGFRiDaa~~L~---------------------- 234 (720)
T 1iv8_A 181 LMSWKNPPSYRRFFDVNTLIGVNVEXDHVFQESHSXILDL----DVDGYRIDHIDGLY---------------------- 234 (720)
T ss_dssp EEETTSCCSBCEETTEEEEEEBCTTSHHHHHHHTTTGGGS----CCSEEEETTGGGCS----------------------
T ss_pred cccccccccccccccccCCcccccCcHHHHHHHHHHHHhc----CCCEEEEechhhhc----------------------
Confidence 1221 2468889999999999999999 99999999999871
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q psy9001 439 DTDALIYLMVANKFLHDKYPEIITIAEDVSG 469 (1351)
Q Consensus 439 ~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~ 469 (1351)
++..||+.+++.++ | +++|||.|.+
T Consensus 235 --~p~~f~~~lr~~v~---p-~~ligE~~~~ 259 (720)
T 1iv8_A 235 --DPEKYINDLRSIIK---N-XIIIVEKILG 259 (720)
T ss_dssp --CHHHHHHHHHHHHT---T-CEEEECCCCC
T ss_pred --ChHHHHHHHHHHhc---c-ceEEeeccCC
Confidence 14679999998765 7 9999998865
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=246.45 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=44.7
Q ss_pred ccccc-cccccccc----CCCCCHHHHHHHHHHHHHcCCEEEEEeecccccC
Q psy9001 1014 EQLKY-LVDECHKA----GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 1060 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~id----p~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~ 1060 (1351)
.+||| ++|||.|+ |+|||++|||+||++||++||+||||||+||++.
T Consensus 669 ~~~GY~~~d~~~i~es~~~~~Gt~~df~~lv~~~H~~GI~VilD~V~NH~~~ 720 (844)
T 3aie_A 669 IQNGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSKGIKVMADWVPDQMYA 720 (844)
T ss_dssp TTCSSSBSCTTCSSCSSCBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEECC
T ss_pred CCCCCccccCccCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccCcccC
Confidence 46899 99999999 9999999999999999999999999999999974
|
| >1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-21 Score=240.56 Aligned_cols=141 Identities=18% Similarity=0.270 Sum_probs=103.7
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc--CCccccCc----CCCCCCC------------
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS--KNVLDGLN----EFDGTQA------------ 1074 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts--~~~~~~l~----~~dg~~~------------ 1074 (1351)
++||| ++||+.|||+|||.+|||+||++||++||+||||+|+||++ .++..+.. .-++...
T Consensus 46 s~hGYdv~Dy~~Idp~lGt~edfk~LV~aaH~~GIkVIlDvV~NHta~~~~~~wf~d~l~~G~~s~y~d~f~~~~~~g~~ 125 (720)
T 1iv8_A 46 SNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVNSLNWRLMDVLXMGXXSXYYTYFDFFPEDDKI 125 (720)
T ss_dssp CSSCCSEEEEEEECTTTTHHHHHHHHHHHHHHTTCEEEEEECCSEEECCTTCHHHHHHHHHGGGSTTGGGBCBCTTCSSE
T ss_pred CCCCCCCccCCCcCccCCCHHHHHHHHHHHHHCCCEEEEEeccccccCccccHHHHHhhhcccccccccceeecCCCCcc
Confidence 47999 99999999999999999999999999999999999999999 54421100 0000111
Q ss_pred -----------------------------ccccCC----C----------CCCC--------CCCC-------CCCCCCC
Q psy9001 1075 -----------------------------CFFHDG----P----------RGTH--------PLWD-------SRLFNYS 1096 (1351)
Q Consensus 1075 -----------------------------~yf~~~----~----------~g~~--------~~w~-------~~dlN~~ 1096 (1351)
.||+.. + ...+ .||. ..+||++
T Consensus 126 ~~P~~g~~yg~~l~~g~l~~~~d~g~~~~~Yy~~~fp~~~~~~~l~~~~~~q~yrl~~W~~~lNyr~f~d~~~L~dLn~e 205 (720)
T 1iv8_A 126 RLPILGEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIYDTLQKQNYTLMSWKNPPSYRRFFDVNTLIGVNVE 205 (720)
T ss_dssp EEEEESSCHHHHHHTTCEEEEECSSCEEEEETTEEEECSCCCSSHHHHHTTSSEEEEETTSCCSBCEETTEEEEEEBCTT
T ss_pred cCCcccccccccccccceeeeecCCCcchhhccccCCcCccccchhhhhhccceecccccccccccccccccCCcccccC
Confidence 122110 0 0000 1221 2368889
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEE
Q psy9001 1097 EIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 1176 (1351)
Q Consensus 1097 np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilI 1176 (1351)
||+|+++|++++++| ||||||||++.+|. ++..||+.+++.++ | +++|
T Consensus 206 nP~V~~~i~d~l~~W----GVDGFRiDaa~~L~------------------------~p~~f~~~lr~~v~---p-~~li 253 (720)
T 1iv8_A 206 XDHVFQESHSXILDL----DVDGYRIDHIDGLY------------------------DPEKYINDLRSIIK---N-XIII 253 (720)
T ss_dssp SHHHHHHHTTTGGGS----CCSEEEETTGGGCS------------------------CHHHHHHHHHHHHT---T-CEEE
T ss_pred cHHHHHHHHHHHHhc----CCCEEEEechhhhc------------------------ChHHHHHHHHHHhc---c-ceEE
Confidence 999999999999999 99999999999882 15678898888764 7 9999
Q ss_pred EccCCCCCCc
Q psy9001 1177 AEDVSGMPAS 1186 (1351)
Q Consensus 1177 aE~~~~~p~~ 1186 (1351)
||.|.+....
T Consensus 254 gE~~~~~~e~ 263 (720)
T 1iv8_A 254 VEKILGFQEE 263 (720)
T ss_dssp ECCCCCTTCC
T ss_pred eeccCCCCcc
Confidence 9998764443
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=230.49 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=43.9
Q ss_pred ccccc-ccccc----cccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCC
Q psy9001 1014 EQLKY-LVDEC----HKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 1061 (1351)
Q Consensus 1014 ~~hgY-~~Dy~----~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~ 1061 (1351)
.+||| +.||| +++|+||+++|||+||++||++||+||||||+||++..
T Consensus 722 ~~~GYd~~d~~~~~~~i~~~~Gt~~efk~lV~alH~~GI~VIlDvV~NHta~~ 774 (1039)
T 3klk_A 722 IDNGYAFTDRYDLGMSTPNKYGSDEDLRNALQALHKAGLQAIADWVPDQIYNL 774 (1039)
T ss_dssp TTCSSSBSCTTCSSCSSCBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEECCC
T ss_pred CCCCCCcccccccccCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccCCcCCC
Confidence 46888 88998 47899999999999999999999999999999999854
|
| >3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-20 Score=230.38 Aligned_cols=177 Identities=17% Similarity=0.234 Sum_probs=131.0
Q ss_pred ceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCC
Q psy9001 179 LKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHD 258 (1351)
Q Consensus 179 ~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~ 258 (1351)
...|.++ -|+|++++++ ||||++||||+ |||+|||+ + . .
T Consensus 4 ~aTYrlQ---------gGtf~~i~~~-LdyL~~LGvt~----V~LsPi~e--------------------~--~-~---- 42 (704)
T 3hje_A 4 LSTYRLQ---------PMKFSEIRNR-LDYFVELGVTH----LYLSPVLK--------------------A--R-P---- 42 (704)
T ss_dssp SEEEEEC---------SCCHHHHHTT-HHHHHHHTCSE----EEECCCEE--------------------E--S-T----
T ss_pred ceEEEeC---------CCCHHHHHHH-HHHHHHCCCCE----EEECCCcc--------------------C--C-C----
Confidence 5677777 3899999998 99999999999 99999553 2 1 1
Q ss_pred ccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9001 259 QALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLL 338 (1351)
Q Consensus 259 ~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VIL 338 (1351)
..+|||+++||+ +++ |++|+.+||++||++||++||+|||
T Consensus 43 ~s~~GYd~~Dy~---------------------~vd-------------------p~lGt~edfk~LV~~aH~~GI~Vil 82 (704)
T 3hje_A 43 GSTHGYDVVDYN---------------------TIN-------------------DELGGEEEYIRLIDEAKSKGLGIIQ 82 (704)
T ss_dssp TCSSSCSEEEEE---------------------EEC-------------------GGGTHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCCcCCC---------------------CcC-------------------ccCCCHHHHHHHHHHHHHCCCEEEE
Confidence 134999999999 777 8999999999999999999999999
Q ss_pred Eeecccccc--CCcCCcccC-CCCC---CcCcccCC-------------------------------------CC-----
Q psy9001 339 DVVHSHASK--NVLDGLNEF-DGTQ---ACFFHDGP-------------------------------------RG----- 370 (1351)
Q Consensus 339 DvV~NH~~~--~~~~~~~~f-~g~~---~~yy~~~~-------------------------------------~~----- 370 (1351)
|+|+||++. ++.|..... .|.. ..||...+ .+
T Consensus 83 DvV~NH~s~~~~~~wf~d~l~~g~~s~Y~d~F~W~~~~g~v~~P~lg~~~~~y~~~l~~G~i~lY~d~~Pl~p~~~~~~~ 162 (704)
T 3hje_A 83 DIVPNHMAVHHTNWRLMDVLKKGRHSRYYNYFDFYEEEEKIRIPILGDRNFKITYVNDEPYLDYYGNLFPINDEGRNYLN 162 (704)
T ss_dssp EECCSEEECSTTCHHHHHHHHHGGGSGGGGGBCBCTTCSSEEEEEESSCCCEEEEETTEEEEEETTEEEECCTTGGGCTT
T ss_pred eecccccccccchHHHHHHHhcCCCCCCCccccccCCCCceecCcCCCCcccccccccCCceeeccccCCCCcccccccc
Confidence 999999986 332211000 0100 11111000 00
Q ss_pred -----------------CCCCC-------CCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCC
Q psy9001 371 -----------------THPLW-------DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGF 426 (1351)
Q Consensus 371 -----------------~~~~w-------~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f 426 (1351)
...++ +-.+||.++|.|++.+.+.+.+| ||||||+|++..|.
T Consensus 163 ~l~~l~~~Q~Yrl~~w~~~~nyrRff~l~~L~dLn~e~p~V~~~i~~~L~~L----GVdGFRvDaadgL~---------- 228 (704)
T 3hje_A 163 DIEKLLKVQYYELVDWRDYPSYRRFFAVNELIAVRQELEWVFEDSHSKILSF----EVDGYRIDHIDGLF---------- 228 (704)
T ss_dssp CHHHHHHTSSEEEEETTSCCSBCEETTEEEEEEBCTTSHHHHHHHHTTGGGS----CCSEEEETTGGGCS----------
T ss_pred hhhhhhhhhhhhhcccccccccccccccCCchhccCCCHHHHHHHHHHHHHc----CCCEEEEeCcCccc----------
Confidence 00111 11378999999999999999999 99999999999881
Q ss_pred CCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCC
Q psy9001 427 SGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVS 468 (1351)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~ 468 (1351)
++..||+.+++. .|+.++++|...
T Consensus 229 --------------DP~~yl~rLr~~----~~~~~iv~EkIl 252 (704)
T 3hje_A 229 --------------KPEEYLRRLKNK----IGNKHIFVEKIL 252 (704)
T ss_dssp --------------SHHHHHHHHHHH----HTTCEEEECCCC
T ss_pred --------------CHHHHHHHHHHh----CCCcEEEEEEeC
Confidence 356788888754 478999999763
|
| >3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-18 Score=211.74 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=107.9
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccC--CccccC----cCCCCCCCccccCCCC-C--
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK--NVLDGL----NEFDGTQACFFHDGPR-G-- 1083 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~--~~~~~l----~~~dg~~~~yf~~~~~-g-- 1083 (1351)
++||| ++||+.|+|+|||.+||++||++||++||+||||+|+||++. ++..+. +.-++....||.-.+. +
T Consensus 44 s~~GYd~~Dy~~vdp~lGt~edfk~LV~~aH~~GI~VilDvV~NH~s~~~~~~wf~d~l~~g~~s~Y~d~F~W~~~~g~v 123 (704)
T 3hje_A 44 STHGYDVVDYNTINDELGGEEEYIRLIDEAKSKGLGIIQDIVPNHMAVHHTNWRLMDVLKKGRHSRYYNYFDFYEEEEKI 123 (704)
T ss_dssp CSSSCSEEEEEEECGGGTHHHHHHHHHHHHHHHTCEEEEEECCSEEECSTTCHHHHHHHHHGGGSGGGGGBCBCTTCSSE
T ss_pred CCCCCCCcCCCCcCccCCCHHHHHHHHHHHHHCCCEEEEeecccccccccchHHHHHHHhcCCCCCCCccccccCCCCce
Confidence 46899 999999999999999999999999999999999999999986 331110 0011122223321000 0
Q ss_pred ------C--------------------------------------------------CCCC-------CCCCCCCCCHHH
Q psy9001 1084 ------T--------------------------------------------------HPLW-------DSRLFNYSEIEV 1100 (1351)
Q Consensus 1084 ------~--------------------------------------------------~~~w-------~~~dlN~~np~V 1100 (1351)
. ..|+ +..+||.++|.|
T Consensus 124 ~~P~lg~~~~~y~~~l~~G~i~lY~d~~Pl~p~~~~~~~~l~~l~~~Q~Yrl~~w~~~~nyrRff~l~~L~dLn~e~p~V 203 (704)
T 3hje_A 124 RIPILGDRNFKITYVNDEPYLDYYGNLFPINDEGRNYLNDIEKLLKVQYYELVDWRDYPSYRRFFAVNELIAVRQELEWV 203 (704)
T ss_dssp EEEEESSCCCEEEEETTEEEEEETTEEEECCTTGGGCTTCHHHHHHTSSEEEEETTSCCSBCEETTEEEEEEBCTTSHHH
T ss_pred ecCcCCCCcccccccccCCceeeccccCCCCcccccccchhhhhhhhhhhhhcccccccccccccccCCchhccCCCHHH
Confidence 0 0111 012799999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccC
Q psy9001 1101 LRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV 1180 (1351)
Q Consensus 1101 r~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~ 1180 (1351)
++.+.+.+.+| ||||||+|++.+|. ++..+|+.+++. .|+.++++|..
T Consensus 204 ~~~i~~~L~~L----GVdGFRvDaadgL~------------------------DP~~yl~rLr~~----~~~~~iv~EkI 251 (704)
T 3hje_A 204 FEDSHSKILSF----EVDGYRIDHIDGLF------------------------KPEEYLRRLKNK----IGNKHIFVEKI 251 (704)
T ss_dssp HHHHHTTGGGS----CCSEEEETTGGGCS------------------------SHHHHHHHHHHH----HTTCEEEECCC
T ss_pred HHHHHHHHHHc----CCCEEEEeCcCccc------------------------CHHHHHHHHHHh----CCCcEEEEEEe
Confidence 99999999999 99999999999882 355677666643 47899999987
Q ss_pred CCCCCcccccccC--Cccccc
Q psy9001 1181 SGMPASCRPVTEG--GTGFDY 1199 (1351)
Q Consensus 1181 ~~~p~~~~p~~~g--g~GFdy 1199 (1351)
-....... |..+ ..||+|
T Consensus 252 l~~~E~L~-w~v~~gtTgYd~ 271 (704)
T 3hje_A 252 LSIGEKLR-WDFIDGTTGYDF 271 (704)
T ss_dssp CCTTCCCS-CTTSCEESSHHH
T ss_pred CCCCCcCC-CcccCCcchhHH
Confidence 54444333 4444 347776
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.3e-18 Score=213.73 Aligned_cols=110 Identities=13% Similarity=0.149 Sum_probs=83.7
Q ss_pred CCCceEEEEec--CCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccc
Q psy9001 176 PDNLKIYESHV--GICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 253 (1351)
Q Consensus 176 ~~~~vIYE~hv--r~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~ 253 (1351)
+.+.+|||+.. ++|...+...+|++|+++ |||||+||||+ |||||||+ + +.
T Consensus 608 ~~~~ViYe~f~~~~s~~~~g~~~~~~gi~~~-l~yLk~LGvt~----I~L~Pi~~--------------------~--~~ 660 (844)
T 3aie_A 608 LDSRVMFEGFSNFQAFATKKEEYTNVVIAKN-VDKFAEWGVTD----FEMAPQYV--------------------S--ST 660 (844)
T ss_dssp HHTCCEEECCCTTCCCCSSGGGCHHHHHHHT-HHHHHHTTCCE----EECCCCSC--------------------B--CC
T ss_pred cCceEEEEeCCCcccCCCCCCcccHHHHHHH-HHHHHHCCCCe----EEECCccc--------------------C--CC
Confidence 46889999766 555433222334999998 99999999999 99999664 2 22
Q ss_pred cC--CCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHH
Q psy9001 254 AE--SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 331 (1351)
Q Consensus 254 ~~--s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~ 331 (1351)
.+ ....++|||++.+|| +++. .++++||+++||++||++||+
T Consensus 661 ~~~~~~~~~~~GY~~~d~~---------------------~i~e---------------s~~~~~Gt~~df~~lv~~~H~ 704 (844)
T 3aie_A 661 DGSFLDSVIQNGYAFTDRY---------------------DLGI---------------SKPNKYGTADDLVKAIKALHS 704 (844)
T ss_dssp CCSSGGGTTTCSSSBSCTT---------------------CSSC---------------SSCBTTBCHHHHHHHHHHHHH
T ss_pred CCccccccCCCCCccccCc---------------------cCCC---------------CCCCCCCCHHHHHHHHHHHHH
Confidence 11 111246999999999 3331 112899999999999999999
Q ss_pred cCCEEEEEeeccccccC
Q psy9001 332 AGLYVLLDVVHSHASKN 348 (1351)
Q Consensus 332 ~GI~VILDvV~NH~~~~ 348 (1351)
+||+||||||+||++..
T Consensus 705 ~GI~VilD~V~NH~~~~ 721 (844)
T 3aie_A 705 KGIKVMADWVPDQMYAL 721 (844)
T ss_dssp TTCEEEEEECCSEECCC
T ss_pred CCCEEEEEEccCcccCC
Confidence 99999999999999753
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-16 Score=199.55 Aligned_cols=112 Identities=16% Similarity=0.211 Sum_probs=85.2
Q ss_pred CCCceEEEEecC--CccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccc
Q psy9001 176 PDNLKIYESHVG--ICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 253 (1351)
Q Consensus 176 ~~~~vIYE~hvr--~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~ 253 (1351)
+++.||||.+.. .+.+....|+|++|+++ |||||+||||+ |||||||++.+ ++...+
T Consensus 661 l~~~VIYEGFt~~~~~~~~~~~gt~~gi~~k-ldyLk~LGVta----IwL~Pi~~~~~-----------~~~~~~----- 719 (1039)
T 3klk_A 661 LDSNVIYEGFSNFIYWPTTESERTNVRIAQN-ADLFKSWGITT----FELAPQYNSSK-----------DGTFLD----- 719 (1039)
T ss_dssp HHTCCEEECCCTTBCCCSSGGGCHHHHHHHT-HHHHHHTTCCE----EECCCCSCBCC-----------CCSSGG-----
T ss_pred cCCcEEEccccccCCCCCCCCCCCHHHHHHH-HHHHHHcCCCE----EEECccccCCc-----------cccccc-----
Confidence 458899994421 12234557999999998 99999999999 99999775210 000111
Q ss_pred cCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcC
Q psy9001 254 AESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 333 (1351)
Q Consensus 254 ~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~G 333 (1351)
...+|||++.+|| ++. ..++++||+++|||+||++||++|
T Consensus 720 ----~~~~~GYd~~d~~---------------------~~~---------------~~i~~~~Gt~~efk~lV~alH~~G 759 (1039)
T 3klk_A 720 ----SIIDNGYAFTDRY---------------------DLG---------------MSTPNKYGSDEDLRNALQALHKAG 759 (1039)
T ss_dssp ----GTTTCSSSBSCTT---------------------CSS---------------CSSCBTTBCHHHHHHHHHHHHHTT
T ss_pred ----CcCCCCCCccccc---------------------ccc---------------cCCCCCCCCHHHHHHHHHHHHHCC
Confidence 1356999999999 322 023489999999999999999999
Q ss_pred CEEEEEeeccccccC
Q psy9001 334 LYVLLDVVHSHASKN 348 (1351)
Q Consensus 334 I~VILDvV~NH~~~~ 348 (1351)
|+||||||+||++..
T Consensus 760 I~VIlDvV~NHta~~ 774 (1039)
T 3klk_A 760 LQAIADWVPDQIYNL 774 (1039)
T ss_dssp CEEEEEECCSEECCC
T ss_pred CEEEEEEccCCcCCC
Confidence 999999999999854
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-14 Score=183.83 Aligned_cols=108 Identities=14% Similarity=0.166 Sum_probs=80.0
Q ss_pred CceEEEEecCCcc--CCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccC
Q psy9001 178 NLKIYESHVGICT--QEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 255 (1351)
Q Consensus 178 ~~vIYE~hvr~ft--~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~ 255 (1351)
..+|||.+--... .....++|++|+++ |||||+||||+ |||||||++ +...
T Consensus 830 s~Vi~QgF~W~~~~~g~~w~~Ty~~I~~k-LdYLk~LGITa----IwL~Pi~~s----------------------~~~~ 882 (1108)
T 3ttq_A 830 SNLIYEGFSNFQPKATTHDELTNVVIAKN-ADVFNNWGITS----FEMAPQYRS----------------------SGDH 882 (1108)
T ss_dssp TCCEEECCCTTCCCCSSGGGSHHHHHHHT-HHHHHHHTCCE----EECCCCSCB----------------------CCCC
T ss_pred CceEEEeEECCCCCCCCccchhHHHHHHH-HHHHHHcCCCE----EEECCCccC----------------------CCcc
Confidence 5799994432111 11234678899998 99999999999 999997752 1110
Q ss_pred C--CCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcC
Q psy9001 256 S--HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 333 (1351)
Q Consensus 256 s--~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~G 333 (1351)
. .....+||++.||| .+. |.++|+||+++|||+||++||++|
T Consensus 883 ~~~~~~~d~GYdi~D~y---------------------~lG---------------f~i~~~yGt~edfk~LV~alH~~G 926 (1108)
T 3ttq_A 883 TFLDSTIDNGYAFTDRY---------------------DLG---------------FNTPTKYGTDGDLRATIQALHHAN 926 (1108)
T ss_dssp SSGGGTTTCSSSBSCTT---------------------CSS---------------SSSCCSSCCHHHHHHHHHHHHHTT
T ss_pred ccccccccCCccccccc---------------------ccC---------------cCCCCCCCCHHHHHHHHHHHHHCC
Confidence 0 01234899999999 211 113499999999999999999999
Q ss_pred CEEEEEeeccccccC
Q psy9001 334 LYVLLDVVHSHASKN 348 (1351)
Q Consensus 334 I~VILDvV~NH~~~~ 348 (1351)
|+||||||+||++..
T Consensus 927 I~VIlDvV~NHta~~ 941 (1108)
T 3ttq_A 927 MQVMADVVDNQVYNL 941 (1108)
T ss_dssp CEEEEEECCSEECCC
T ss_pred CEEEEEeccccccCC
Confidence 999999999999844
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-10 Score=146.31 Aligned_cols=48 Identities=23% Similarity=0.355 Sum_probs=43.1
Q ss_pred ccccc-cccccc----ccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCC
Q psy9001 1014 EQLKY-LVDECH----KAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 1061 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~----idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~ 1061 (1351)
..+|| +.|||. ++|+|||++|||+||++||++||+||||||+||++..
T Consensus 889 ~d~GYdi~D~y~lGf~i~~~yGt~edfk~LV~alH~~GI~VIlDvV~NHta~~ 941 (1108)
T 3ttq_A 889 IDNGYAFTDRYDLGFNTPTKYGTDGDLRATIQALHHANMQVMADVVDNQVYNL 941 (1108)
T ss_dssp TTCSSSBSCTTCSSSSSCCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCC
T ss_pred ccCCcccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccCC
Confidence 35777 778777 7999999999999999999999999999999999843
|
| >1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.1e-08 Score=95.74 Aligned_cols=64 Identities=25% Similarity=0.385 Sum_probs=52.6
Q ss_pred CceeEEE----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceE
Q psy9001 67 KAGLLCF----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATY 142 (1351)
Q Consensus 67 ~~gv~F~----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~ 142 (1351)
+..|+|+ |++|+|+||||+|+ .++|++. +|+|+++|+ +.+|. ..|||.| +|+ .+.||+|..
T Consensus 10 ~~~v~F~wap~a~~V~v~GdFn~W~--~~~m~~~-~g~w~~~v~-l~~G~------~~YKf~V---dG~--~~~DP~~~~ 74 (96)
T 1z0n_A 10 ARPTVFRWTGGGKEVYLSGSFNNWS--KLPMTRS-QNNFVAILD-LPEGE------HQYKFFV---DGQ--WTHDPSEPI 74 (96)
T ss_dssp CEEEEEEECSCCSCEEEEEGGGTTC--CEECEEE-TTEEEEEEE-ECSEE------EEEEEEE---TTE--EECCTTSCE
T ss_pred ceEEEEEECCCCcEEEEEEEeCCCc--cccCEEC-CCEEEEEEE-ccCCC------EEEEEEE---CCe--EEcCCCCCe
Confidence 4578898 99999999999998 6899985 489999996 66552 4799988 575 489999987
Q ss_pred Eec
Q psy9001 143 VTE 145 (1351)
Q Consensus 143 ~~~ 145 (1351)
+..
T Consensus 75 ~~d 77 (96)
T 1z0n_A 75 VTS 77 (96)
T ss_dssp EEC
T ss_pred EEC
Confidence 753
|
| >3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis} | Back alignment and structure |
|---|
Probab=97.77 E-value=7.3e-05 Score=94.49 Aligned_cols=132 Identities=12% Similarity=0.088 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHH
Q psy9001 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW-DSRLFNYSEIEVLRFLLSNLRWY 1111 (1351)
Q Consensus 1033 edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w-~~~dlN~~np~Vr~~lid~l~yW 1111 (1351)
+-|+.||+.+|++||++.+-+.+..++.+.. -.. ..+.|+...+.+....+ ....||++||+||+++.+.++-+
T Consensus 393 ~Gl~~lv~~ih~~Glk~glW~~Pe~v~~dS~-l~~----~hPdw~l~~~~g~~~~~r~~~vLD~tnPevr~~i~~~l~~l 467 (745)
T 3mi6_A 393 DGIEHFSQAVHQQGMKFGLWFEPEMVSVDSD-LYQ----QHPDWLIHAPKSTPTPGRHQFVLDMARPEVVDYLFKLMSQM 467 (745)
T ss_dssp THHHHHHHHHHHTTCEEEEEECTTEECSSSS-HHH----HCGGGBCCCTTCCCCCSSSCEEBCTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCEEEEEEcccccCCCCH-HHH----hCcceEEEcCCCceeecCCeEEECCCCHHHHHHHHHHHHHH
Confidence 4599999999999999999999877766541 111 12345554444433322 33469999999999999999999
Q ss_pred HHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEE
Q psy9001 1112 LEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 1176 (1351)
Q Consensus 1112 l~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilI 1176 (1351)
++++|||||.+|.-..+... + ..+...+..|. .-..-+.-+-.+.+.+++.+|++++-
T Consensus 468 l~~~GIDy~K~D~nr~i~~~--~----~~~~~~~~q~~-~~~~y~~g~y~ll~~l~~~~P~v~ie 525 (745)
T 3mi6_A 468 IESANLDYIKWDMNRYATEM--F----SSRLTSDQQLE-LPHRYILGVYQLYARLTQAYPNVLFE 525 (745)
T ss_dssp HHHHTCSEEEECCCSCCCSC--C----CSSSCGGGGGG-HHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred HHHCCCCEEEECCCCCCccc--C----CCcCccccccH-HHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 99999999999987766210 0 00000000000 00011222334577788899998773
|
| >1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A | Back alignment and structure |
|---|
Probab=97.62 E-value=6.4e-05 Score=71.60 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=17.4
Q ss_pred cEEEEeecCCccEEEEEec-chh
Q psy9001 706 SVRCFEWAPSAQQLYLTGY-NAV 727 (1351)
Q Consensus 706 ~~~~~~WaP~A~~v~l~~~-~~~ 727 (1351)
.++| +|||.|++|+|+|+ |+|
T Consensus 12 ~v~F-~wap~a~~V~v~GdFn~W 33 (96)
T 1z0n_A 12 PTVF-RWTGGGKEVYLSGSFNNW 33 (96)
T ss_dssp EEEE-EECSCCSCEEEEEGGGTT
T ss_pred EEEE-EECCCCcEEEEEEEeCCC
Confidence 3777 99999999999994 553
|
| >3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0002 Score=90.62 Aligned_cols=92 Identities=13% Similarity=0.178 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCC-CCCccCCCCCHHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL-WDSRLFNYSEIEVLRFLLSNLRW 397 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~-w~~~~ln~~~p~v~~~l~~~l~~ 397 (1351)
|+.|+.||+++|++||++.|-+.+..++.++... . ..+.|+...+.+.... +....||++||+|++++.+.++.
T Consensus 392 P~Gl~~lv~~ih~~Glk~glW~~Pe~v~~dS~l~----~-~hPdw~l~~~~g~~~~~r~~~vLD~tnPevr~~i~~~l~~ 466 (745)
T 3mi6_A 392 PDGIEHFSQAVHQQGMKFGLWFEPEMVSVDSDLY----Q-QHPDWLIHAPKSTPTPGRHQFVLDMARPEVVDYLFKLMSQ 466 (745)
T ss_dssp TTHHHHHHHHHHHTTCEEEEEECTTEECSSSSHH----H-HCGGGBCCCTTCCCCCSSSCEEBCTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHCCCEEEEEEcccccCCCCHHH----H-hCcceEEEcCCCceeecCCeEEECCCCHHHHHHHHHHHHH
Confidence 3469999999999999999999998777654211 0 1133444433333222 23457999999999999999999
Q ss_pred HHHHcCCCcccccccccc
Q psy9001 398 YLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 398 W~~e~~vDGfR~D~a~~~ 415 (1351)
++.++|||||.+|....+
T Consensus 467 ll~~~GIDy~K~D~nr~i 484 (745)
T 3mi6_A 467 MIESANLDYIKWDMNRYA 484 (745)
T ss_dssp HHHHHTCSEEEECCCSCC
T ss_pred HHHHCCCCEEEECCCCCC
Confidence 999999999999986665
|
| >2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00053 Score=87.25 Aligned_cols=125 Identities=15% Similarity=0.132 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCC-CCccCCCCCHHHHHHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW-DSRLFNYSEIEVLRFLLSNLRWYL 399 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w-~~~~ln~~~p~v~~~l~~~l~~W~ 399 (1351)
.|+.||+++|++||++.|-+.+..++.++... ...+.|+...+.+....| ....||++||+|++++.+.+..++
T Consensus 393 Glk~lvd~ih~~Glk~GlW~~P~~v~~~S~l~-----~~hpdw~~~~~~~~~~~~~~~~~LD~t~Pea~~~~~~~l~~l~ 467 (720)
T 2yfo_A 393 SLAELITRVHEQGMKFGIWIEPEMINEDSDLY-----RAHPDWAIRIQGKKPVRSRNQLLLDFSRKEVRDCVFDQICVVL 467 (720)
T ss_dssp CHHHHHHHHHHTTCEEEEEECTTEECSSSHHH-----HHCGGGBCCCTTSCCCCBTTBEEBCTTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCEEEEEecccccCCCCHHH-----HhCcceEEECCCcCcccCCceEEECCCCHHHHHHHHHHHHHHH
Confidence 49999999999999999999998776653211 011223333222222222 234699999999999999999999
Q ss_pred HHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEE
Q psy9001 400 DEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 465 (1351)
Q Consensus 400 ~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE 465 (1351)
.++|||+|.+|....+. ..+.. +.. ......+..+.+.+++.+|++++..=
T Consensus 468 ~~~GIDy~K~D~n~~~~-------~~~~~-------~~~-~~y~~~~y~l~~~l~~~~p~v~~e~C 518 (720)
T 2yfo_A 468 DQGKIDYVKWDMNRSMA-------DVYAG-------NLS-YDYVLGVYDFMERLCSRYPDLLLEGC 518 (720)
T ss_dssp TTSCCCEEEECCCSCCC-------SCCST-------THH-HHHHHHHHHHHHHHHHHSTTCEEEEC
T ss_pred HHcCCCEEEECCCCCcc-------ccCCc-------cHH-HHHHHHHHHHHHHHHHhCCCcEEEec
Confidence 99999999999754331 00100 000 01112234566778888999877543
|
| >2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00023 Score=90.46 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW-DSRLFNYSEIEVLRFLLSNLRWYL 1112 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w-~~~dlN~~np~Vr~~lid~l~yWl 1112 (1351)
.||.||+.+|++||++.+-+.+..++.+..- . ..++.|+...+.+....| ....||++||+||+++.+.++.++
T Consensus 393 Glk~lvd~ih~~Glk~GlW~~P~~v~~~S~l-~----~~hpdw~~~~~~~~~~~~~~~~~LD~t~Pea~~~~~~~l~~l~ 467 (720)
T 2yfo_A 393 SLAELITRVHEQGMKFGIWIEPEMINEDSDL-Y----RAHPDWAIRIQGKKPVRSRNQLLLDFSRKEVRDCVFDQICVVL 467 (720)
T ss_dssp CHHHHHHHHHHTTCEEEEEECTTEECSSSHH-H----HHCGGGBCCCTTSCCCCBTTBEEBCTTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCEEEEEecccccCCCCHH-H----HhCcceEEECCCcCcccCCceEEECCCCHHHHHHHHHHHHHHH
Confidence 4999999999999999999998877665310 0 012234443333332222 233599999999999999999999
Q ss_pred HHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEc
Q psy9001 1113 EEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 1178 (1351)
Q Consensus 1113 ~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE 1178 (1351)
+++|||+|.+|....+.. ..+ ...-......+..+.+.+++.+|++++..=
T Consensus 468 ~~~GIDy~K~D~n~~~~~-------~~~--------~~~~~~y~~~~y~l~~~l~~~~p~v~~e~C 518 (720)
T 2yfo_A 468 DQGKIDYVKWDMNRSMAD-------VYA--------GNLSYDYVLGVYDFMERLCSRYPDLLLEGC 518 (720)
T ss_dssp TTSCCCEEEECCCSCCCS-------CCS--------TTHHHHHHHHHHHHHHHHHHHSTTCEEEEC
T ss_pred HHcCCCEEEECCCCCccc-------cCC--------ccHHHHHHHHHHHHHHHHHHhCCCcEEEec
Confidence 999999999998543310 000 000011223334667888888999876543
|
| >2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0068 Score=77.31 Aligned_cols=89 Identities=19% Similarity=0.157 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCC--CccCCCCCHHHHHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWY 398 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~--~~~ln~~~p~v~~~l~~~l~~W 398 (1351)
.++.||+.+|++||++.|-+.+...+.++... ...+.|+...+ +....|+ ...||+.||+|++++.+.+..+
T Consensus 397 Glk~lv~~ih~~Glk~GlW~~P~~v~~~S~l~-----~~hpdw~~~~~-g~~~~~~~~~~~LD~t~Pev~~~i~~~l~~~ 470 (732)
T 2xn2_A 397 GLGHFADYVHEQGLKFGLWFEPEMISYESNLY-----KEHPDYLXHVP-GRKPCPSRNQYVLELGRKEVRDNIFEQMVKI 470 (732)
T ss_dssp CHHHHHHHHHHTTCEEEEEECTTEECSSSHHH-----HHCGGGBCCCT-TSCCCCBTTBEEBCTTSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCEEEEEeCccccCCCCHHH-----HhCchheecCC-CCCCccCCceEEEcCCCHHHHHHHHHHHHHH
Confidence 59999999999999999999887655543110 01122322222 1122232 3469999999999999999999
Q ss_pred HHHcCCCcccccccccc
Q psy9001 399 LDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 399 ~~e~~vDGfR~D~a~~~ 415 (1351)
+.++|||+|.+|....+
T Consensus 471 ~~~~GVD~~K~D~~~~~ 487 (732)
T 2xn2_A 471 LDSKKIDYIKWDMNRSL 487 (732)
T ss_dssp HTTSCCCEEEECCCCCC
T ss_pred HHHcCCCEEEECCCccc
Confidence 99999999999987654
|
| >2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00052 Score=76.40 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=48.2
Q ss_pred eeEEE----EEEEEEEeecCCCCccccceee--cCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceE
Q psy9001 69 GLLCF----MHVVCAAGDFNNWNREEFAYKK--LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATY 142 (1351)
Q Consensus 69 gv~F~----A~~V~LvGDFN~Wd~~~~~M~k--~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~ 142 (1351)
.|+|+ |++|+|+|+||+|+.. ++|+| ...|+|++.++ +.+|. .+|||.| ||+ ++.||-+..
T Consensus 5 pv~f~W~~~a~~V~V~GsF~~W~~~-~~m~k~~~~~G~f~~tv~-LppG~------y~YKFiV---DG~--w~~Dp~~p~ 71 (252)
T 2qlv_B 5 PVEIRWQQGGSKVYVTGSFTKWRKM-IGLIPDSDNNGSFHVKLR-LLPGT------HRFRFIV---DNE--LRVSDFLPT 71 (252)
T ss_dssp EEEEEECSCCSCEEEEEGGGTTSSC-EECEECSSSTTCEEEEEE-ECSEE------EEEEEEE---TTE--EECCTTSCE
T ss_pred EEEEEEeCCCcEEEEEEEeCCCcCc-ccceeccCCCCcEEEEEE-CCCCE------EEEEEEE---CCE--EEeCCCCCE
Confidence 57888 9999999999999864 89998 45799999984 55664 5677776 575 566887765
Q ss_pred Ee
Q psy9001 143 VT 144 (1351)
Q Consensus 143 ~~ 144 (1351)
+.
T Consensus 72 ~~ 73 (252)
T 2qlv_B 72 AT 73 (252)
T ss_dssp EB
T ss_pred Ee
Confidence 53
|
| >2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0021 Score=81.98 Aligned_cols=89 Identities=17% Similarity=0.136 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWY 1111 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~--~~dlN~~np~Vr~~lid~l~yW 1111 (1351)
.||.||+.+|++||++.+-+.+..++.+..- . ..++.|+...+. ....|+ ...||+.||+|++++.+.+.-+
T Consensus 397 Glk~lv~~ih~~Glk~GlW~~P~~v~~~S~l-~----~~hpdw~~~~~g-~~~~~~~~~~~LD~t~Pev~~~i~~~l~~~ 470 (732)
T 2xn2_A 397 GLGHFADYVHEQGLKFGLWFEPEMISYESNL-Y----KEHPDYLXHVPG-RKPCPSRNQYVLELGRKEVRDNIFEQMVKI 470 (732)
T ss_dssp CHHHHHHHHHHTTCEEEEEECTTEECSSSHH-H----HHCGGGBCCCTT-SCCCCBTTBEEBCTTSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCEEEEEeCccccCCCCHH-H----HhCchheecCCC-CCCccCCceEEEcCCCHHHHHHHHHHHHHH
Confidence 5999999999999999999988755544310 0 011233332222 122332 2359999999999999999999
Q ss_pred HHHhCCCeEEEcCcccc
Q psy9001 1112 LEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1112 l~eygVDGFRfD~a~~m 1128 (1351)
+.++|||+|.+|....+
T Consensus 471 ~~~~GVD~~K~D~~~~~ 487 (732)
T 2xn2_A 471 LDSKKIDYIKWDMNRSL 487 (732)
T ss_dssp HTTSCCCEEEECCCCCC
T ss_pred HHHcCCCEEEECCCccc
Confidence 99999999999998654
|
| >3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00049 Score=78.48 Aligned_cols=70 Identities=14% Similarity=0.192 Sum_probs=54.8
Q ss_pred ccCceeEEE-----EEEEEEEeecCCCCccccceeecC-CCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCC
Q psy9001 65 CHKAGLLCF-----MHVVCAAGDFNNWNREEFAYKKLD-FGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSP 138 (1351)
Q Consensus 65 ~~~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~-~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DP 138 (1351)
..+..|+|+ |++|+|+|+||+|+ ..+||++.+ +|+|++.++ +.+|. .+|||.|+ |+ ++.||
T Consensus 167 ~~k~~v~f~~~~~~~~~V~v~GsF~~W~-~~~~l~k~~~~g~~~~~~~-L~~G~------y~YkFiVD---G~--w~~d~ 233 (294)
T 3nme_A 167 LKRKTVTLTLKDKGFSRVEISGLDIGWG-QRIPLTLGKGTGFWILKRE-LPEGQ------FEYKYIID---GE--WTHNE 233 (294)
T ss_dssp CCCEEEEEEEECSSCSCEEEEETTTEEE-EEEECEECTTTCEEEEEEE-ECSEE------EEEEEEET---TE--EECCT
T ss_pred cccccceeeeccCCCCEEEEEEeccCCC-CcccceEcCCCCEEEEEEE-CCCce------EEEEEEEC---CE--EeeCC
Confidence 355678999 79999999999998 568999975 899999996 66664 56777764 65 67899
Q ss_pred cceEEecCC
Q psy9001 139 WATYVTEPP 147 (1351)
Q Consensus 139 yA~~~~~~~ 147 (1351)
-+.....+.
T Consensus 234 ~~~~~~~d~ 242 (294)
T 3nme_A 234 AEPFIGPNK 242 (294)
T ss_dssp TSCEECSCT
T ss_pred CCCeeeECC
Confidence 988775443
|
| >4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.017 Score=73.65 Aligned_cols=137 Identities=14% Similarity=0.090 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCC-CCCCccCCCCCHHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP-LWDSRLFNYSEIEVLRFLLSNLRW 397 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~-~w~~~~ln~~~p~v~~~l~~~l~~ 397 (1351)
|+.||.|++.+|++||++-|=+-+--.+.++... . ..+.+....+.+... ......||+.+|+|++++.+.+..
T Consensus 391 P~Glk~Lad~vh~~GmkfGLW~epe~v~~~S~l~----~-~hPdw~~~~~~~~~~~~r~q~~LD~~~P~v~~y~~~~i~~ 465 (729)
T 4fnq_A 391 PNGLDGLAKQVNELGMQFGLWVEPEMVSPNSELY----R-KHPDWCLHVPNRPRSEGRNQLVLDYSREDVCDYIIETISN 465 (729)
T ss_dssp TTHHHHHHHHHHHTTCEEEEEECTTEECSSSHHH----H-HCGGGBCCCTTSCCCCBTTBEEBCTTSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHCCCEEEEEeeccccCCCcHHH----H-hCchheeccCccCCccCCccccccCCChhHHHHHHHHHHH
Confidence 4579999999999999988876654433332110 0 001111111111111 112347899999999999999999
Q ss_pred HHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcC
Q psy9001 398 YLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV 467 (1351)
Q Consensus 398 W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~ 467 (1351)
.+.++|||.+.+|....+... ........-.+......+.-+..+.+.+++.+|++++-.=.+
T Consensus 466 ll~~~GidYiK~D~n~~~~~~-------~~~~~~~~~~~~~~~~~~~~~y~l~d~L~~~~P~i~ie~C~~ 528 (729)
T 4fnq_A 466 VLASAPITYVKWDMNRHMTEI-------GSSALPPERQRETAHRYMLGLYRVMDEMTSRFPHILFESCSG 528 (729)
T ss_dssp HHTTTTCCEEEEECCCCCCSC-------CCTTSCGGGGGGHHHHHHHHHHHHHHHHHHHCTTCEEEEEBT
T ss_pred HHHHCCCCEEEEcCCCCCCcC-------CCCCCCcccchhHHHHHHHHHHHHHHHHHHHCCCcEEEcccC
Confidence 999999999999976544211 000000000000000111223345567888999988755444
|
| >1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.024 Score=70.14 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCC----CCCC--CccCCCCCHHHHHHHHHHH
Q psy9001 322 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH----PLWD--SRLFNYSEIEVLRFLLSNL 395 (1351)
Q Consensus 322 fk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~----~~w~--~~~ln~~~p~v~~~l~~~l 395 (1351)
++.||+++|++||++.+=+-+.-...++. .+.. .+.|+... .|.. ..|. ...+|+.||++++++.+.+
T Consensus 252 lk~lvd~lh~~Glk~Giw~~P~~v~~~S~----ly~~-~pdw~v~~-~G~~~~~~~~W~~~~~~lD~t~P~a~~~~~~~~ 325 (564)
T 1zy9_A 252 VEEMAKVIAENGFIPGIWTAPFSVSETSD----VFNE-HPDWVVKE-NGEPKMAYRNWNKKIYALDLSKDEVLNWLFDLF 325 (564)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTEEETTCH----HHHH-CGGGBCEE-TTEECEEEEETTEEEEEBCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCCccCCCCh----hHHh-CCCeEEec-CCeeeeeecccCCceeecCCCCHHHHHHHHHHH
Confidence 99999999999999999877653333211 0000 12333222 1211 1354 3579999999999999999
Q ss_pred HHHHHHcCCCccccccccc
Q psy9001 396 RWYLDEYQFDGFRFDGVTS 414 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~~ 414 (1351)
+.+ .++|||||.+|....
T Consensus 326 ~~~-~~~GVD~iK~D~~~~ 343 (564)
T 1zy9_A 326 SSL-RKMGYRYFKIDFLFA 343 (564)
T ss_dssp HHH-HHTTCCEEEECCGGG
T ss_pred HHH-HhcCCCEEEEcCCCC
Confidence 999 779999999998654
|
| >1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.015 Score=71.88 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=60.7
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCC----CCCC--CCCCCCCCHHHHHHHHHHH
Q psy9001 1035 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH----PLWD--SRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1035 fK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~----~~w~--~~dlN~~np~Vr~~lid~l 1108 (1351)
+|.||+++|++||++.+=+-+--...+.. ... ..+.||... .|.. ..|. ...+|+.||++++++.+.+
T Consensus 252 lk~lvd~lh~~Glk~Giw~~P~~v~~~S~-ly~----~~pdw~v~~-~G~~~~~~~~W~~~~~~lD~t~P~a~~~~~~~~ 325 (564)
T 1zy9_A 252 VEEMAKVIAENGFIPGIWTAPFSVSETSD-VFN----EHPDWVVKE-NGEPKMAYRNWNKKIYALDLSKDEVLNWLFDLF 325 (564)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTEEETTCH-HHH----HCGGGBCEE-TTEECEEEEETTEEEEEBCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCCccCCCCh-hHH----hCCCeEEec-CCeeeeeecccCCceeecCCCCHHHHHHHHHHH
Confidence 99999999999999999876643322210 000 122344322 2211 1353 3469999999999999999
Q ss_pred HHHHHHhCCCeEEEcCcccc
Q psy9001 1109 RWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~~m 1128 (1351)
+.+ .++|||||.+|.....
T Consensus 326 ~~~-~~~GVD~iK~D~~~~~ 344 (564)
T 1zy9_A 326 SSL-RKMGYRYFKIDFLFAG 344 (564)
T ss_dssp HHH-HHTTCCEEEECCGGGG
T ss_pred HHH-HhcCCCEEEEcCCCCc
Confidence 999 8899999999997643
|
| >4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.023 Score=72.55 Aligned_cols=135 Identities=14% Similarity=0.107 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW-DSRLFNYSEIEVLRFLLSNLRW 1110 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w-~~~dlN~~np~Vr~~lid~l~y 1110 (1351)
|+.||.|++.+|++||+.-|=+-+--.+.+.. ... .++.|....+.+....+ ....||+.+|+|++++.+.+.-
T Consensus 391 P~Glk~Lad~vh~~GmkfGLW~epe~v~~~S~-l~~----~hPdw~~~~~~~~~~~~r~q~~LD~~~P~v~~y~~~~i~~ 465 (729)
T 4fnq_A 391 PNGLDGLAKQVNELGMQFGLWVEPEMVSPNSE-LYR----KHPDWCLHVPNRPRSEGRNQLVLDYSREDVCDYIIETISN 465 (729)
T ss_dssp TTHHHHHHHHHHHTTCEEEEEECTTEECSSSH-HHH----HCGGGBCCCTTSCCCCBTTBEEBCTTSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHCCCEEEEEeeccccCCCcH-HHH----hCchheeccCccCCccCCccccccCCChhHHHHHHHHHHH
Confidence 35699999999999999988875543333210 000 11222222222222211 2336899999999999999999
Q ss_pred HHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEc
Q psy9001 1111 YLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 1178 (1351)
Q Consensus 1111 Wl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE 1178 (1351)
.++++|||.+.+|....+... .+......-........+.-+..+.+.|++.+|++++-.=
T Consensus 466 ll~~~GidYiK~D~n~~~~~~-------~~~~~~~~~~~~~~~~~~~~~y~l~d~L~~~~P~i~ie~C 526 (729)
T 4fnq_A 466 VLASAPITYVKWDMNRHMTEI-------GSSALPPERQRETAHRYMLGLYRVMDEMTSRFPHILFESC 526 (729)
T ss_dssp HHTTTTCCEEEEECCCCCCSC-------CCTTSCGGGGGGHHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHCCCCEEEEcCCCCCCcC-------CCCCCCcccchhHHHHHHHHHHHHHHHHHHHCCCcEEEcc
Confidence 999999999999987655211 0000000000000011223345667788899999877543
|
| >1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.16 Score=58.11 Aligned_cols=114 Identities=11% Similarity=0.181 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 397 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~ 397 (1351)
..+.|.++|+.|+++||+||||++-++.... +...+ ..++. + .....+.+|.+++.+.+.++.
T Consensus 88 ~~~~ld~~i~~a~~~Gi~vild~~~~w~~~g---~~~~~----~~~~g----~------~~~~~~~~~~~~~~~~~~~~~ 150 (344)
T 1qnr_A 88 GLQTLDYVVQSAEQHNLKLIIPFVNNWSDYG---GINAY----VNAFG----G------NATTWYTNTAAQTQYRKYVQA 150 (344)
T ss_dssp TTHHHHHHHHHHHHHTCEEEEESCBSSSTTS---HHHHH----HHHHC----S------CTTGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeccCccccC---CHHHH----HHHhC----C------ChhhhcCCHHHHHHHHHHHHH
Confidence 4688999999999999999999875432110 00000 00000 0 012445789999999999999
Q ss_pred HHHHcCCCc-c-ccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeE-EEEE
Q psy9001 398 YLDEYQFDG-F-RFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEII-TIAE 465 (1351)
Q Consensus 398 W~~e~~vDG-f-R~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~-~iaE 465 (1351)
+++.|+=+. + -+++.++. .. ..........+++++.+.||+..|... +++.
T Consensus 151 ~~~r~~~~p~v~~w~l~NEp---------~~--------~~~~~~~~~~~~~~~~~~ir~~dp~~~v~~g~ 204 (344)
T 1qnr_A 151 VVSRYANSTAIFAWELGNEP---------RC--------NGCSTDVIVQWATSVSQYVKSLDSNHLVTLGD 204 (344)
T ss_dssp HHHHHTTCTTEEEEESCBSC---------CC--------TTCCTHHHHHHHHHHHHHHHHHCSSSEEECCC
T ss_pred HHHHhCCCCcEEEEEcccCc---------cc--------CCCChHHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 999864321 0 01221111 00 000112235688899999999999864 4443
|
| >1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=1.3 Score=52.46 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9001 317 GTPEQLKYLVDECHKAGLYVLLDVVH 342 (1351)
Q Consensus 317 G~~~efk~LV~~~H~~GI~VILDvV~ 342 (1351)
.+.+.+.+|+++|+++||+||||+-+
T Consensus 86 ~d~~~~~~~a~~Ak~~GLkVlldfHy 111 (399)
T 1ur4_A 86 NDLEKAIQIGKRATANGMKLLADFHY 111 (399)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 35789999999999999999999833
|
| >3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif, glycoside H family 66, hydrolase; 1.60A {Streptococcus mutans} PDB: 3vmo_A* 3vmp_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.26 Score=60.82 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccc--cCCC--CCCCCCC-----C----CCCCCCCC
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFF--HDGP--RGTHPLW-----D----SRLFNYSE 1097 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf--~~~~--~g~~~~w-----~----~~dlN~~n 1097 (1351)
..+-.|.+|++||+.||+-|.=.-+.-+..+. .++....|| .... .+....+ + ..-+|-.+
T Consensus 189 ~~~tVk~yI~~ah~~gm~aM~YnmiYaA~~~~------~~g~~~~~~~y~~~~~~~g~~~~~~~~~~~g~p~~~~~nP~n 262 (643)
T 3vmn_A 189 ETDAVKALVNRVHQTGAVAMLYNMILAQNANE------TAVLPDTEYIYNYETGGYGQNGQVMTYSIDDKPLQYYYNPLS 262 (643)
T ss_dssp EHHHHHHHHHHHHHTTCEEEEEEESSEEETTS------CCSSCGGGBCEESSSBTTBSTTSBCEEEETTEEEEEEBCTTC
T ss_pred hHHHHHHHHHHHHHcCchhhhhHhhhccccCc------ccCCcchhhhhccccccccccCccceeccCCCceEEEECCCC
Confidence 36889999999999999988744433333321 122222121 1111 1111001 1 11479999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEcCccc
Q psy9001 1098 IEVLRFLLSNLRWYLEEYQFDGFRFDGVTS 1127 (1351)
Q Consensus 1098 p~Vr~~lid~l~yWl~eygVDGFRfD~a~~ 1127 (1351)
|+.|+||.+.+.-.++.|+||||.+|..+.
T Consensus 263 p~wq~yI~~~~~dvv~~~dfDG~HiD~lG~ 292 (643)
T 3vmn_A 263 KSWQNYISNAMAQAMKNGGFDGWQGDTIGD 292 (643)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEECSCC
T ss_pred HHHHHHHHHHHHHHHHhCCCceEeecccCC
Confidence 999999999999999999999999999874
|
| >3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A | Back alignment and structure |
|---|
Probab=92.27 E-value=0.82 Score=54.13 Aligned_cols=111 Identities=15% Similarity=0.208 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHH
Q psy9001 317 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 396 (1351)
Q Consensus 317 G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~ 396 (1351)
|..+-|+++|+.|+++||+||||+ |.......+ + -+.+.. ....|. ++..++..++.++
T Consensus 110 ~~~~~ld~vV~~a~~~Gl~VILDl---H~~pG~qng---~-------~~sG~~-~~~~w~-------~~~~~~~~~~~w~ 168 (399)
T 3n9k_A 110 GQVQYLEKALGWARKNNIRVWIDL---HGAPGSQNG---F-------DNSGLR-DSYNFQ-------NGDNTQVTLNVLN 168 (399)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEE---EECTTCSSC---C-------GGGSST-TCCCTT-------STTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEe---cCCCccccc---c-------cCCCCC-CCCCCC-------CHHHHHHHHHHHH
Confidence 457889999999999999999998 543321111 1 011111 112233 2335677777778
Q ss_pred HHHHHcCCCcc-----ccccccccccccCCCCCCCCCCccccCCCccCch-HHHHHHHHHHHHHhhCCCeEE-EEEc
Q psy9001 397 WYLDEYQFDGF-----RFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD-ALIYLMVANKFLHDKYPEIIT-IAED 466 (1351)
Q Consensus 397 ~W~~e~~vDGf-----R~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~f~~~~~~~v~~~~P~~~~-iaE~ 466 (1351)
..+++|+=..+ -+++..+ ..+...+.+ -..|.+.+.++||+..|+..+ |+..
T Consensus 169 ~iA~ry~~~~y~~~V~~~el~NE------------------P~~~~~~~~~~~~~~~~a~~~IR~~~p~~~Iii~dg 227 (399)
T 3n9k_A 169 TIFKKYGGNEYSDVVIGIELLNE------------------PLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDA 227 (399)
T ss_dssp HHHHHHSSGGGTTTEEEEESCSC------------------CCGGGSCHHHHHHHHHHHHHHHHHTTCCCCEEEECT
T ss_pred HHHHHhhcccCCCceEEEEeccC------------------CCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEeCC
Confidence 88887643211 1122111 111111222 236888899999999998755 4443
|
| >3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif, glycoside H family 66, hydrolase; 1.60A {Streptococcus mutans} PDB: 3vmo_A* 3vmp_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.52 Score=58.20 Aligned_cols=94 Identities=14% Similarity=0.121 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcC--cccCC--CCCCCC--------CC-CccCC
Q psy9001 315 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACF--FHDGP--RGTHPL--------WD-SRLFN 381 (1351)
Q Consensus 315 ~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~y--y~~~~--~~~~~~--------w~-~~~ln 381 (1351)
|--..+-.|.+|++||+.||+-|.=.-..-+..+. -+|....+ |.... .+.... |. -..+|
T Consensus 186 R~i~~~tVk~yI~~ah~~gm~aM~YnmiYaA~~~~------~~g~~~~~~~y~~~~~~~g~~~~~~~~~~~g~p~~~~~n 259 (643)
T 3vmn_A 186 SQVETDAVKALVNRVHQTGAVAMLYNMILAQNANE------TAVLPDTEYIYNYETGGYGQNGQVMTYSIDDKPLQYYYN 259 (643)
T ss_dssp CEEEHHHHHHHHHHHHHTTCEEEEEEESSEEETTS------CCSSCGGGBCEESSSBTTBSTTSBCEEEETTEEEEEEBC
T ss_pred CEehHHHHHHHHHHHHHcCchhhhhHhhhccccCc------ccCCcchhhhhccccccccccCccceeccCCCceEEEEC
Confidence 33347889999999999999977532222222211 11111111 11110 111100 10 13579
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCccccccccc
Q psy9001 382 YSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTS 414 (1351)
Q Consensus 382 ~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~ 414 (1351)
.++|++|+||.+.+...++.|+||||.+|....
T Consensus 260 P~np~wq~yI~~~~~dvv~~~dfDG~HiD~lG~ 292 (643)
T 3vmn_A 260 PLSKSWQNYISNAMAQAMKNGGFDGWQGDTIGD 292 (643)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCEEEEECSCC
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCceEeecccCC
Confidence 999999999999999999999999999997654
|
| >1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=91.05 E-value=1.5 Score=52.00 Aligned_cols=111 Identities=21% Similarity=0.340 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 397 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~ 397 (1351)
..+.|+++|+.|.++||+||||+-. ......+ ++ +.+.. .. ..+.++..++..++.++.
T Consensus 112 ~l~~ld~vv~~a~~~Gi~VilDlH~---~pG~qng---~~-------~sG~~-~~-------~~w~~~~~~~~~~~~w~~ 170 (408)
T 1h4p_A 112 QESYLDQAIGWARNNSLKVWVDLHG---AAGSQNG---FD-------NSGLR-DS-------YKFLEDSNLAVTINVLNY 170 (408)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEE---CTTCSSC---CG-------GGSST-TC-------CCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCC---CCCccCC---cc-------CCCCC-CC-------CCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999853 2211111 11 00000 11 224457888888888888
Q ss_pred HHHHcCCC----cc-ccccccccccccCCCCCCCCCCccccCCCccCchH-H-HHHHHHHHHHHhh-CCC-eEEEEEcC
Q psy9001 398 YLDEYQFD----GF-RFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDA-L-IYLMVANKFLHDK-YPE-IITIAEDV 467 (1351)
Q Consensus 398 W~~e~~vD----Gf-R~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~-~f~~~~~~~v~~~-~P~-~~~iaE~~ 467 (1351)
.+++|+=+ -. -++++.+. .+...+.+. . .+++.+.++||+. .|+ .++|.|.+
T Consensus 171 ia~ry~~~~y~~~Vi~~el~NEP------------------~~~~~~~~~~~~~~~~~~~~~IR~~~~~~~~iii~dg~ 231 (408)
T 1h4p_A 171 ILKKYSAEEYLDIVIGIELINEP------------------LGPVLDMDKMKNDYLAPAYEYLRNNIKSDQVIIIHDAF 231 (408)
T ss_dssp HHHHTTSHHHHTTEEEEESCSCC------------------CGGGSCHHHHHHHTHHHHHHHHHHTTCCCCCEEEECTT
T ss_pred HHHHHcccCCCCeEEEEEeccCC------------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEeeecc
Confidence 88876532 11 12222211 111112222 3 6778888999998 664 56777744
|
| >3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A {Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A* 3n18_A* 3n1a_A* | Back alignment and structure |
|---|
Probab=90.66 E-value=3.2 Score=47.84 Aligned_cols=107 Identities=14% Similarity=0.277 Sum_probs=70.8
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q psy9001 1026 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLL 1105 (1351)
Q Consensus 1026 dp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~li 1105 (1351)
+|...+.+++.+.|++||++|++|||=+ . .+.+ ..-..+++.|+.++
T Consensus 52 ~~~~~~~~~~~~~i~~~k~~g~kvllsi-------G------G~~~--------------------s~~~~~~~~r~~fi 98 (333)
T 3n12_A 52 SPVYGTDADFKSDISYLKSKGKKVVLSI-------G------GQNG--------------------VVLLPDNAAKDRFI 98 (333)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTCEEEEEE-------E------STTC--------------------CCCCCSHHHHHHHH
T ss_pred cCCccchHHHHHHHHHHHhCCCeEEEEe-------c------CCCC--------------------ccccCCHHHHHHHH
Confidence 4445578899999999999999999865 0 0000 01245689999999
Q ss_pred HHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEE
Q psy9001 1106 SNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1175 (1351)
Q Consensus 1106 d~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~il 1175 (1351)
+++.-.+++|++||+-||-=.-... .+..+.+ ...+...-..++++++..+++..+..++
T Consensus 99 ~si~~~~~~~gfDGiDiDwE~p~~~--~~~d~~~--------~~~d~~~~~~ll~eLr~~l~~~g~~~~l 158 (333)
T 3n12_A 99 NSIQSLIDKYGFDGIDIDLESGIYL--NGNDTNF--------KNPTTPQIVNLISAIRTISDHYGPDFLL 158 (333)
T ss_dssp HHHHHHHHHHCCSEEEEECCTTCCB--CTTCCCT--------TSCCCHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHcCCCeEEEeccCCCCC--CCCCcCC--------CcccHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999996532100 0000000 0011223467889999999887666544
|
| >2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase; HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1 b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A* 1we5_A* | Back alignment and structure |
|---|
Probab=90.54 E-value=0.18 Score=64.71 Aligned_cols=92 Identities=12% Similarity=0.259 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCCC---CCCC--CccCCCCCHHHH
Q psy9001 315 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVL 388 (1351)
Q Consensus 315 ~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~~---~~w~--~~~ln~~~p~v~ 388 (1351)
+|-. .++||+++|++|+++++=+-+ |.+.++. .| .+....||..++++.. ..|. ...+|+.||+++
T Consensus 324 ~FPd---p~~mv~~Lh~~G~k~~l~i~P-~I~~~s~----~y~e~~~~g~~vk~~~G~~~~~~~w~g~~~~~DftnP~a~ 395 (773)
T 2f2h_A 324 TFPD---PEGMIRRLKAKGLKICVWINP-YIGQKSP----VFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDAC 395 (773)
T ss_dssp TCSC---HHHHHHHHHHTTCEEEEEECS-EECTTST----THHHHHHHTCBCBCTTSSBCCBSSSSTTBEEBCTTSHHHH
T ss_pred hCCC---HHHHHHHHHHCCCEEEEEecC-CcCCCCH----HHHHHHHCCceeECCCCCeeeeeecCCCceeeCCCCHHHH
Confidence 4544 479999999999999986655 4444321 11 1111124443333322 2243 246899999999
Q ss_pred HHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 389 RFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 389 ~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
+++.+.++.+++ .|||||-+|....+
T Consensus 396 ~ww~~~~~~l~d-~Gvd~~w~D~~e~~ 421 (773)
T 2f2h_A 396 KWYADKLKGLVA-MGVDCFKTDFGERI 421 (773)
T ss_dssp HHHHHHHHHHHH-TTCCEEEECCCCCC
T ss_pred HHHHHHHHHHHh-cCCCEEEccCCCCC
Confidence 999999999887 89999999975533
|
| >2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A* | Back alignment and structure |
|---|
Probab=90.45 E-value=0.14 Score=64.88 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=60.7
Q ss_pred HHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCCC---CCCCC--ccCCCCCHHHHHHHHHHH
Q psy9001 322 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWDS--RLFNYSEIEVLRFLLSNL 395 (1351)
Q Consensus 322 fk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~~---~~w~~--~~ln~~~p~v~~~l~~~l 395 (1351)
+++||+++|++|+++++=+-+ +...+. ....| .+.. ||..++++.. ..|.+ .-+|+.||++++++.+.+
T Consensus 232 p~~mv~~Lh~~G~k~~l~i~P-~I~~~~--~y~~y~e~~~--~fvk~~~G~~~~g~~W~g~~~~~Dftnp~a~~ww~~~~ 306 (693)
T 2g3m_A 232 PKKLIDELHKRNVKLITIVDH-GIRVDQ--NYSPFLSGMG--KFCEIESGELFVGKMWPGTTVYPDFFREDTREWWAGLI 306 (693)
T ss_dssp HHHHHHHHHHTTCEEEEEECS-CEECCT--TCHHHHHHTT--SBCEETTSSBCEEEETTEEEECBCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEecC-cccCCC--CcHHHHHHHh--heEECCCCCEEEEEeCCCCeeeeCCCCHHHHHHHHHHH
Confidence 689999999999999997766 555431 11111 1222 5554444332 23543 568999999999999999
Q ss_pred HHHHHHcCCCcccccccc
Q psy9001 396 RWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~ 413 (1351)
+.+++ .|||||-+|+..
T Consensus 307 ~~l~~-~GiDg~w~DmnE 323 (693)
T 2g3m_A 307 SEWLS-QGVDGIWLDMNE 323 (693)
T ss_dssp HHHHT-TTCCEEEECSTT
T ss_pred HHHHh-cCCcEEEEecCC
Confidence 99885 799999999754
|
| >1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* | Back alignment and structure |
|---|
Probab=90.34 E-value=2 Score=49.50 Aligned_cols=115 Identities=14% Similarity=0.030 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 397 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~ 397 (1351)
..+.+.++++.|+++||+||||+ |.++. |.- .+. ......|.. .++--...+.++..+++..
T Consensus 58 ~~~~~~~~~~~A~~~GlkV~ld~---Hysd~--Wad---Pg~---------Q~~p~~W~~-~~~~~~~~~~~yt~~vl~~ 119 (332)
T 1hjs_A 58 NLDYNIAIAKRAKAAGLGVYIDF---HYSDT--WAD---PAH---------QTMPAGWPS-DIDNLSWKLYNYTLDAANK 119 (332)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEE---CCSSS--CCB---TTB---------CBCCTTCCC-SHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEEEe---ccCCC--cCC---ccc---------cCCcccccc-chHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999997 55432 110 010 011234653 3333345677778888887
Q ss_pred HHHHcCCCccccccccccccccCCCCCCCCCCccccCCCc-cCch-HHHHHHHHHHHHHhhC--CCeEEE
Q psy9001 398 YLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN-VDTD-ALIYLMVANKFLHDKY--PEIITI 463 (1351)
Q Consensus 398 W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~-~~~f~~~~~~~v~~~~--P~~~~i 463 (1351)
..+ .++ .++.+........+ +. +..+. .+.+ ...+++...+.||+.. |++.++
T Consensus 120 l~~-~g~---~~~~v~vGNEi~~g----~~-----w~~g~~~~~~~~~~l~~~~~~avR~~~~~p~~~v~ 176 (332)
T 1hjs_A 120 LQN-AGI---QPTIVSIGNEIRAG----LL-----WPTGRTENWANIARLLHSAAWGIKDSSLSPKPKIM 176 (332)
T ss_dssp HHH-TTC---CCSEEEESSSGGGE----ET-----BTTEETTCHHHHHHHHHHHHHHHHTSCCSSCCEEE
T ss_pred HHH-cCC---CCCEEEEeeccccc----cc-----CcCCCccCHHHHHHHHHHHHHHHHHhccCCCCeEE
Confidence 555 343 34433211000000 00 00011 1222 2468888899999998 886544
|
| >2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase; HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1 b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A* 1we5_A* | Back alignment and structure |
|---|
Probab=90.11 E-value=0.21 Score=64.12 Aligned_cols=89 Identities=10% Similarity=0.233 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCC---CCCC--CCCCCCCCHHHHHHHHHHHH
Q psy9001 1035 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSNLR 1109 (1351)
Q Consensus 1035 fK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~---~~w~--~~dlN~~np~Vr~~lid~l~ 1109 (1351)
.+.||+++|++|+++++=+-+ |.+.++. ... ++....||...++|.. ..|. ..-+|+.||++|++..+.++
T Consensus 328 p~~mv~~Lh~~G~k~~l~i~P-~I~~~s~-~y~--e~~~~g~~vk~~~G~~~~~~~w~g~~~~~DftnP~a~~ww~~~~~ 403 (773)
T 2f2h_A 328 PEGMIRRLKAKGLKICVWINP-YIGQKSP-VFK--ELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLK 403 (773)
T ss_dssp HHHHHHHHHHTTCEEEEEECS-EECTTST-THH--HHHHHTCBCBCTTSSBCCBSSSSTTBEEBCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEecC-CcCCCCH-HHH--HHHHCCceeECCCCCeeeeeecCCCceeeCCCCHHHHHHHHHHHH
Confidence 478999999999999986654 4444320 000 0111234444333322 2232 23589999999999999999
Q ss_pred HHHHHhCCCeEEEcCcccc
Q psy9001 1110 WYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1110 yWl~eygVDGFRfD~a~~m 1128 (1351)
.+++ +|||||-+|....+
T Consensus 404 ~l~d-~Gvd~~w~D~~e~~ 421 (773)
T 2f2h_A 404 GLVA-MGVDCFKTDFGERI 421 (773)
T ss_dssp HHHH-TTCCEEEECCCCCC
T ss_pred HHHh-cCCCEEEccCCCCC
Confidence 9886 79999999986543
|
| >2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A* | Back alignment and structure |
|---|
Probab=90.09 E-value=0.16 Score=64.42 Aligned_cols=86 Identities=20% Similarity=0.277 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccCCccccCcCC-CCCCCccccCCCCCCC---CCCC--CCCCCCCCHHHHHHHHHHH
Q psy9001 1035 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1035 fK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~-dg~~~~yf~~~~~g~~---~~w~--~~dlN~~np~Vr~~lid~l 1108 (1351)
+++||+++|++|+++++=+-+ +.+.+. ....+ ++.. ||...++|.. ..|. +.-+|+.||++|++..+.+
T Consensus 232 p~~mv~~Lh~~G~k~~l~i~P-~I~~~~--~y~~y~e~~~--~fvk~~~G~~~~g~~W~g~~~~~Dftnp~a~~ww~~~~ 306 (693)
T 2g3m_A 232 PKKLIDELHKRNVKLITIVDH-GIRVDQ--NYSPFLSGMG--KFCEIESGELFVGKMWPGTTVYPDFFREDTREWWAGLI 306 (693)
T ss_dssp HHHHHHHHHHTTCEEEEEECS-CEECCT--TCHHHHHHTT--SBCEETTSSBCEEEETTEEEECBCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEecC-cccCCC--CcHHHHHHHh--heEECCCCCEEEEEeCCCCeeeeCCCCHHHHHHHHHHH
Confidence 689999999999999997755 544431 00000 0111 5544444432 2343 2368999999999999999
Q ss_pred HHHHHHhCCCeEEEcCcc
Q psy9001 1109 RWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~ 1126 (1351)
+.+++ .|||||=+|+..
T Consensus 307 ~~l~~-~GiDg~w~DmnE 323 (693)
T 2g3m_A 307 SEWLS-QGVDGIWLDMNE 323 (693)
T ss_dssp HHHHT-TTCCEEEECSTT
T ss_pred HHHHh-cCCcEEEEecCC
Confidence 99885 699999999864
|
| >1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A* | Back alignment and structure |
|---|
Probab=89.43 E-value=0.58 Score=53.40 Aligned_cols=114 Identities=9% Similarity=0.124 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1110 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~y 1110 (1351)
..+.|+++|+.|+++||+||||++-++...... .. ...|+. ...+..+.++.+++.+++.++.
T Consensus 88 ~~~~ld~~i~~a~~~Gi~vild~~~~w~~~g~~---~~----~~~~~g----------~~~~~~~~~~~~~~~~~~~~~~ 150 (344)
T 1qnr_A 88 GLQTLDYVVQSAEQHNLKLIIPFVNNWSDYGGI---NA----YVNAFG----------GNATTWYTNTAAQTQYRKYVQA 150 (344)
T ss_dssp TTHHHHHHHHHHHHHTCEEEEESCBSSSTTSHH---HH----HHHHHC----------SCTTGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeccCccccCCH---HH----HHHHhC----------CChhhhcCCHHHHHHHHHHHHH
Confidence 578999999999999999999987543211100 00 000110 0123556789999999999999
Q ss_pred HHHHhCCCe--EEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEE-EEc
Q psy9001 1111 YLEEYQFDG--FRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT-IAE 1178 (1351)
Q Consensus 1111 Wl~eygVDG--FRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~il-IaE 1178 (1351)
++++|+=+. +-+++.... ... ......-..+++++.+.||+..|+.++ +|.
T Consensus 151 ~~~r~~~~p~v~~w~l~NEp---------~~~--------~~~~~~~~~~~~~~~~~ir~~dp~~~v~~g~ 204 (344)
T 1qnr_A 151 VVSRYANSTAIFAWELGNEP---------RCN--------GCSTDVIVQWATSVSQYVKSLDSNHLVTLGD 204 (344)
T ss_dssp HHHHHTTCTTEEEEESCBSC---------CCT--------TCCTHHHHHHHHHHHHHHHHHCSSSEEECCC
T ss_pred HHHHhCCCCcEEEEEcccCc---------ccC--------CCChHHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 999875331 011222111 000 011233456788999999999998554 453
|
| >3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31, cell membrane, disulfide bond, glycoprotein, glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A {Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A* 3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A* | Back alignment and structure |
|---|
Probab=89.38 E-value=0.17 Score=65.61 Aligned_cols=94 Identities=17% Similarity=0.335 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCC--cCCcccC-CCCCCcCcccCCCCCC----CCCCC--ccCCCCCH
Q psy9001 315 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV--LDGLNEF-DGTQACFFHDGPRGTH----PLWDS--RLFNYSEI 385 (1351)
Q Consensus 315 ~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~--~~~~~~f-~g~~~~yy~~~~~~~~----~~w~~--~~ln~~~p 385 (1351)
+|- ++++||+++|++|+++++=+-+. .+.+. ......| .|....||..+++|.. ..|.+ .-+||.||
T Consensus 343 ~FP---dp~~mv~~Lh~~G~k~v~~idP~-I~~~s~~~~~y~~y~eg~~~g~fvk~~dG~~~~~g~~WpG~~~~pDFtnP 418 (875)
T 3l4y_A 343 DFK---GFPEFVNELHNNGQKLVIIVDPA-ISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEVWPGQTVFPDYTNP 418 (875)
T ss_dssp TTT---THHHHHHHHHHTTCEEEEEECSC-EECCCCSSSCCHHHHHHHHHTCBCBCTTSSSBCCEEETTEEEECBCTTSH
T ss_pred hCC---CHHHHHHHHHHCCCEEEEEeCCc-cccCcccccccHHHHHHHHCCeEEECCCCCcceEEEecCCCccCcCCCCH
Confidence 564 48899999999999999855443 33321 0011111 1112234555554432 23543 45899999
Q ss_pred HHHHHHHHHHHHHHHHcCCCccccccc
Q psy9001 386 EVLRFLLSNLRWYLDEYQFDGFRFDGV 412 (1351)
Q Consensus 386 ~v~~~l~~~l~~W~~e~~vDGfR~D~a 412 (1351)
++++++.+.++.++.+.||||+-+|+.
T Consensus 419 ~a~~WW~~~~k~~~~~~gidg~W~Dmn 445 (875)
T 3l4y_A 419 NCAVWWTKEFELFHNQVEFDGIWIDMN 445 (875)
T ss_dssp HHHHHHHHHHHHHHTTSCCSEEEECST
T ss_pred HHHHHHHHHHHHHHhhcCCcEEEEcCC
Confidence 999999999999998899999999975
|
| >3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31, alpha-glucosidase membrane, disease mutation, disulfide bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL; 2.15A {Homo sapiens} PDB: 3lpo_A* | Back alignment and structure |
|---|
Probab=89.28 E-value=0.19 Score=65.36 Aligned_cols=92 Identities=14% Similarity=0.290 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCc---CCcccCC-CCCCcCcccCCCCCC----CCCCC--ccCCCCCHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVL---DGLNEFD-GTQACFFHDGPRGTH----PLWDS--RLFNYSEIEVLRF 390 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~---~~~~~f~-g~~~~yy~~~~~~~~----~~w~~--~~ln~~~p~v~~~ 390 (1351)
++++||+++|++|+++++=+-+. ...++. .....|+ |....||..+++|.. ..|.+ .-+||.||+++++
T Consensus 374 dp~~mv~~Lh~~G~k~vl~idP~-I~~~~~~~~~~Y~~y~eg~~~g~fvk~~~G~~~~~g~~WpG~~~~~Dftnp~a~~w 452 (898)
T 3lpp_A 374 GLPQFVQDLHDHGQKYVIILDPA-ISIGRRANGTTYATYERGNTQHVWINESDGSTPIIGEVWPGLTVYPDFTNPNCIDW 452 (898)
T ss_dssp THHHHHHHHHHTTCEEEEEECSC-EECSCCTTSCCCHHHHHHHHHTCBCBCTTSSSBCCEEETTEEEECBCTTSHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEeCCc-cccCCcccccccHHHHHHHhCCcEEECCCCCceeEEEecCCCccccCCCCHHHHHH
Confidence 68899999999999999866553 443321 0111111 122335555554411 23543 4589999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccc
Q psy9001 391 LLSNLRWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 391 l~~~l~~W~~e~~vDGfR~D~a~ 413 (1351)
+.+.++.++++.||||+-+|+..
T Consensus 453 w~~~~~~~~~~~giDg~W~DmnE 475 (898)
T 3lpp_A 453 WANECSIFHQEVQYDGLWIDMNE 475 (898)
T ss_dssp HHHHHHHHHHHSCCSEEEECSTT
T ss_pred HHHHHHHHHhcCCccEEEEeCCC
Confidence 99999999999999999999753
|
| >3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31, alpha-glucosidase membrane, disease mutation, disulfide bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL; 2.15A {Homo sapiens} PDB: 3lpo_A* | Back alignment and structure |
|---|
Probab=89.25 E-value=0.21 Score=64.81 Aligned_cols=91 Identities=15% Similarity=0.296 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCcc---ccCcCCC-CCCCccccCCCCC-C---CCCCCC--CCCCCCCHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVL---DGLNEFD-GTQACFFHDGPRG-T---HPLWDS--RLFNYSEIEVLRF 1103 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~---~~l~~~d-g~~~~yf~~~~~g-~---~~~w~~--~dlN~~np~Vr~~ 1103 (1351)
++++||+++|++|+++++=+-+- .+.++. .....++ +....+|..+++| . -..|.+ .-+|+.||+++++
T Consensus 374 dp~~mv~~Lh~~G~k~vl~idP~-I~~~~~~~~~~Y~~y~eg~~~g~fvk~~~G~~~~~g~~WpG~~~~~Dftnp~a~~w 452 (898)
T 3lpp_A 374 GLPQFVQDLHDHGQKYVIILDPA-ISIGRRANGTTYATYERGNTQHVWINESDGSTPIIGEVWPGLTVYPDFTNPNCIDW 452 (898)
T ss_dssp THHHHHHHHHHTTCEEEEEECSC-EECSCCTTSCCCHHHHHHHHHTCBCBCTTSSSBCCEEETTEEEECBCTTSHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEeCCc-cccCCcccccccHHHHHHHhCCcEEECCCCCceeEEEecCCCccccCCCCHHHHHH
Confidence 68899999999999999976543 333321 0000010 1122345444444 1 123432 3589999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEcCc
Q psy9001 1104 LLSNLRWYLEEYQFDGFRFDGV 1125 (1351)
Q Consensus 1104 lid~l~yWl~eygVDGFRfD~a 1125 (1351)
..+.++.++++.|||||=+|+-
T Consensus 453 w~~~~~~~~~~~giDg~W~Dmn 474 (898)
T 3lpp_A 453 WANECSIFHQEVQYDGLWIDMN 474 (898)
T ss_dssp HHHHHHHHHHHSCCSEEEECST
T ss_pred HHHHHHHHHhcCCccEEEEeCC
Confidence 9999999999999999999985
|
| >1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=89.11 E-value=4.4 Score=46.22 Aligned_cols=110 Identities=9% Similarity=0.064 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 397 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~ 397 (1351)
..+.++++|+.|.++||+||||+- ..... .+.+. ..+.... +.++..++.+.+.++.
T Consensus 75 ~~~~ld~~v~~a~~~Gi~vildlh---~~pg~-----~~~~~--------~~~~~~~-------~~~~~~~~~~~~~~~~ 131 (341)
T 1vjz_A 75 FFEKIDRVIFWGEKYGIHICISLH---RAPGY-----SVNKE--------VEEKTNL-------WKDETAQEAFIHHWSF 131 (341)
T ss_dssp GHHHHHHHHHHHHHHTCEEEEEEE---EETTE-----ESCTT--------SCCSSCT-------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEec---CCCCc-----ccccC--------CCccccc-------cCCHHHHHHHHHHHHH
Confidence 468899999999999999999983 22210 01110 0000112 2356778888888888
Q ss_pred HHHHcCCC--c-cccccccccccccCCCCCCCCCCccccCCCccC-chHHHHHHHHHHHHHhhCCCeEEEEE
Q psy9001 398 YLDEYQFD--G-FRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDKYPEIITIAE 465 (1351)
Q Consensus 398 W~~e~~vD--G-fR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~f~~~~~~~v~~~~P~~~~iaE 465 (1351)
.+++|+=. . .-+++.++. .... ....+ ..-..+++.+.++||+..|+.+++.+
T Consensus 132 ia~ry~~~~~~v~~~el~NEP----------~~~~-----~~~~~~~~~~~~~~~~~~~IR~~~~~~~I~v~ 188 (341)
T 1vjz_A 132 IARRYKGISSTHLSFNLINEP----------PFPD-----PQIMSVEDHNSLIKRTITEIRKIDPERLIIID 188 (341)
T ss_dssp HHHHHTTSCTTTEEEECSSCC----------CCCB-----TTTBCHHHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHhcCCCCeEEEEeccCC----------CCCC-----cccccHHHHHHHHHHHHHHHHhhCCCcEEEEc
Confidence 88877532 1 112222211 0000 00011 12346788999999999999866655
|
| >3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31, cell membrane, disulfide bond, glycoprotein, glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A {Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A* 3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A* | Back alignment and structure |
|---|
Probab=88.58 E-value=0.22 Score=64.60 Aligned_cols=98 Identities=17% Similarity=0.320 Sum_probs=63.1
Q ss_pred cccC-CCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCc--cccCcCCC-CCCCccccCCCCCCC----CCCCC--CCC
Q psy9001 1024 HKAG-LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV--LDGLNEFD-GTQACFFHDGPRGTH----PLWDS--RLF 1093 (1351)
Q Consensus 1024 ~idp-~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~--~~~l~~~d-g~~~~yf~~~~~g~~----~~w~~--~dl 1093 (1351)
..|+ +|- ++++||+++|++|+++++=+-+ |.+.+. ......++ +....+|...++|.. ..|.+ .-+
T Consensus 338 t~D~~~FP---dp~~mv~~Lh~~G~k~v~~idP-~I~~~s~~~~~y~~y~eg~~~g~fvk~~dG~~~~~g~~WpG~~~~p 413 (875)
T 3l4y_A 338 TYDSVDFK---GFPEFVNELHNNGQKLVIIVDP-AISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEVWPGQTVFP 413 (875)
T ss_dssp CCCTTTTT---THHHHHHHHHHTTCEEEEEECS-CEECCCCSSSCCHHHHHHHHHTCBCBCTTSSSBCCEEETTEEEECB
T ss_pred eeChhhCC---CHHHHHHHHHHCCCEEEEEeCC-ccccCcccccccHHHHHHHHCCeEEECCCCCcceEEEecCCCccCc
Confidence 3443 454 4789999999999999995543 233221 00000000 111234544444432 23432 358
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCc
Q psy9001 1094 NYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV 1125 (1351)
Q Consensus 1094 N~~np~Vr~~lid~l~yWl~eygVDGFRfD~a 1125 (1351)
|+.||++|++..+.++.++.++|||||=+|+-
T Consensus 414 DFtnP~a~~WW~~~~k~~~~~~gidg~W~Dmn 445 (875)
T 3l4y_A 414 DYTNPNCAVWWTKEFELFHNQVEFDGIWIDMN 445 (875)
T ss_dssp CTTSHHHHHHHHHHHHHHHTTSCCSEEEECST
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCcEEEEcCC
Confidence 99999999999999999998899999999985
|
| >3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A 3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A* 3poc_A* | Back alignment and structure |
|---|
Probab=88.07 E-value=0.18 Score=63.67 Aligned_cols=89 Identities=16% Similarity=0.325 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCCC---CCCCC--ccCCCCCHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWDS--RLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~~---~~w~~--~~ln~~~p~v~~~l~~~ 394 (1351)
+.++||+++|++|++||+=+-+ |...+. +...| .+....||..+++|.. ..|.+ .-+|+.||++|++..+.
T Consensus 219 dp~~mv~~Lh~~G~k~v~~idP-~i~~~~--~~~~y~e~~~~g~fvk~~~G~~~~g~~WpG~~~~pDftnp~a~~ww~~~ 295 (666)
T 3nsx_A 219 DFPEFVKEMKDQELRLIPIIDA-GVKVEK--GYEVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDK 295 (666)
T ss_dssp THHHHHHHHHTTTCEEEEEEES-CEECCT--TCHHHHHHHHTTCBCBCTTSCBCCEEETTEEEECBCTTSHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCceEEeeecc-ceeeec--CchHHhhhcccCccccCCCCCcceEEecCCccCCccccCHHHHHHhhhh
Confidence 5889999999999999864433 222110 00111 1112235544444432 23543 35799999999999998
Q ss_pred HHHHHHHcCCCcccccccc
Q psy9001 395 LRWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 395 l~~W~~e~~vDGfR~D~a~ 413 (1351)
++.+++ .|||||-+|+..
T Consensus 296 ~~~~~~-~Gidg~W~DmnE 313 (666)
T 3nsx_A 296 YRFLID-QGIEGFWNDMNE 313 (666)
T ss_dssp THHHHT-TTCCEEEEESTT
T ss_pred hhHHHh-ccchhhhhccCC
Confidence 888775 899999999754
|
| >3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A {Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A* 3n18_A* 3n1a_A* | Back alignment and structure |
|---|
Probab=87.70 E-value=4 Score=46.98 Aligned_cols=106 Identities=17% Similarity=0.308 Sum_probs=68.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHH
Q psy9001 313 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLL 392 (1351)
Q Consensus 313 d~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~ 392 (1351)
++.....+++.+.|++||++|++|+|=+ . .+ .+ ..-..+++.|+.++
T Consensus 52 ~~~~~~~~~~~~~i~~~k~~g~kvllsi-------G-G~-----~~--------------------s~~~~~~~~r~~fi 98 (333)
T 3n12_A 52 SPVYGTDADFKSDISYLKSKGKKVVLSI-------G-GQ-----NG--------------------VVLLPDNAAKDRFI 98 (333)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTCEEEEEE-------E-ST-----TC--------------------CCCCCSHHHHHHHH
T ss_pred cCCccchHHHHHHHHHHHhCCCeEEEEe-------c-CC-----CC--------------------ccccCCHHHHHHHH
Confidence 3545567889999999999999999754 1 00 00 01245788999999
Q ss_pred HHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCc-hHHHHHHHHHHHHHhhCCCeEE
Q psy9001 393 SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT-DALIYLMVANKFLHDKYPEIIT 462 (1351)
Q Consensus 393 ~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~f~~~~~~~v~~~~P~~~~ 462 (1351)
+++.-.+++|++||+-+|--.-.... +...++ ...+. .-..|++++++.+++..+..++
T Consensus 99 ~si~~~~~~~gfDGiDiDwE~p~~~~--~~d~~~---------~~~d~~~~~~ll~eLr~~l~~~g~~~~l 158 (333)
T 3n12_A 99 NSIQSLIDKYGFDGIDIDLESGIYLN--GNDTNF---------KNPTTPQIVNLISAIRTISDHYGPDFLL 158 (333)
T ss_dssp HHHHHHHHHHCCSEEEEECCTTCCBC--TTCCCT---------TSCCCHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHcCCCeEEEeccCCCCCC--CCCcCC---------CcccHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999953211000 000000 01122 2357899999999887665433
|
| >3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A 3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A* 3poc_A* | Back alignment and structure |
|---|
Probab=87.31 E-value=0.24 Score=62.56 Aligned_cols=97 Identities=14% Similarity=0.286 Sum_probs=60.6
Q ss_pred ccccC-CCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCC-CCCCCccccCCCCCCC---CCCCC--CCCCC
Q psy9001 1023 CHKAG-LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWDS--RLFNY 1095 (1351)
Q Consensus 1023 ~~idp-~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~-dg~~~~yf~~~~~g~~---~~w~~--~dlN~ 1095 (1351)
|..|+ +|- ++++||+++|++|++||+=|-+ |...+. ....+ ++....||..+++|.. ..|.+ .-+|+
T Consensus 210 ft~d~~~FP---dp~~mv~~Lh~~G~k~v~~idP-~i~~~~--~~~~y~e~~~~g~fvk~~~G~~~~g~~WpG~~~~pDf 283 (666)
T 3nsx_A 210 FTVNEKNFP---DFPEFVKEMKDQELRLIPIIDA-GVKVEK--GYEVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDM 283 (666)
T ss_dssp TCCCTTTCT---THHHHHHHHHTTTCEEEEEEES-CEECCT--TCHHHHHHHHTTCBCBCTTSCBCCEEETTEEEECBCT
T ss_pred cccChhhCC---CHHHHHHHHHHcCceEEeeecc-ceeeec--CchHHhhhcccCccccCCCCCcceEEecCCccCCccc
Confidence 34443 455 5889999999999999874432 221110 00000 0111235544444432 23432 24899
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcCcc
Q psy9001 1096 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1096 ~np~Vr~~lid~l~yWl~eygVDGFRfD~a~ 1126 (1351)
.||++|+...+.++..++ .|||||=+|+..
T Consensus 284 tnp~a~~ww~~~~~~~~~-~Gidg~W~DmnE 313 (666)
T 3nsx_A 284 LNPEARKWFGDKYRFLID-QGIEGFWNDMNE 313 (666)
T ss_dssp TSHHHHHHHHHTTHHHHT-TTCCEEEEESTT
T ss_pred cCHHHHHHhhhhhhHHHh-ccchhhhhccCC
Confidence 999999999998888775 799999999864
|
| >1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A | Back alignment and structure |
|---|
Probab=86.76 E-value=3.9 Score=46.67 Aligned_cols=103 Identities=14% Similarity=0.168 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 398 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W 398 (1351)
.+.++++|+.|+++||+||||+-.. .... +.+. +.... +.+++.++.+.+.++..
T Consensus 68 ~~~l~~~v~~a~~~Gi~vildlh~~---~g~~-----~~~~----------~~~~~-------~~~~~~~~~~~~~~~~i 122 (343)
T 1ceo_A 68 LSYIDRCLEWCKKYNLGLVLDMHHA---PGYR-----FQDF----------KTSTL-------FEDPNQQKRFVDIWRFL 122 (343)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEC---CC-----------------------CCT-------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCC---Cccc-----cCCC----------CcccC-------cCCHHHHHHHHHHHHHH
Confidence 5789999999999999999997542 1110 1110 00011 23567778888888888
Q ss_pred HHHcCCCc--cccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEE
Q psy9001 399 LDEYQFDG--FRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 465 (1351)
Q Consensus 399 ~~e~~vDG--fR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE 465 (1351)
+++|+=+- .-+++..+. . .. ....-..+.+.+.++||+..|+..++.+
T Consensus 123 a~~~~~~~~v~~~el~NEP----------~--------~~-~~~~~~~~~~~~~~~IR~~~p~~~i~v~ 172 (343)
T 1ceo_A 123 AKRYINEREHIAFELLNQV----------V--------EP-DSTRWNKLMLECIKAIREIDSTMWLYIG 172 (343)
T ss_dssp HHHTTTCCSSEEEECCSCC----------C--------CS-SSHHHHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred HHHhcCCCCeEEEEeccCC----------C--------Cc-chHHHHHHHHHHHHHHHhhCCCCEEEEe
Confidence 88764311 112222111 0 00 0122346778889999999999766665
|
| >2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.50 E-value=0.69 Score=46.22 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=40.1
Q ss_pred ceeEEE-------EEEEEEEee---cCCCCcc-ccceeec----CCCeEEEEcCCCCCCCcccCcccEEEEEE
Q psy9001 68 AGLLCF-------MHVVCAAGD---FNNWNRE-EFAYKKL----DFGKWELVLPPNPDGSCKLTHLSQVKLVV 125 (1351)
Q Consensus 68 ~gv~F~-------A~~V~LvGD---FN~Wd~~-~~~M~k~----~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i 125 (1351)
..|+|+ .+.|.|+|+ |.+|++. .++|... ...+|.+.|+- +.+. --.|||.+
T Consensus 9 v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~l-p~~~-----~~eYKyvi 75 (131)
T 2z0b_A 9 SQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVL-SRGV-----SVQYRYFK 75 (131)
T ss_dssp EEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEE-CTTC-----CEEEEEEE
T ss_pred EEEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEc-CCCC-----cEEEEEEE
Confidence 468888 578999999 9999974 6899986 78999998853 3331 24799988
|
| >1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A | Back alignment and structure |
|---|
Probab=86.29 E-value=6.5 Score=45.18 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVV 341 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV 341 (1351)
..+.+++++++|+++||+||||+-
T Consensus 58 d~~~~~~~~~~ak~~Gl~v~ld~h 81 (334)
T 1fob_A 58 DLDYNLELAKRVKAAGMSLYLDLH 81 (334)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEec
Confidence 468899999999999999999973
|
| >4ba0_A Alpha-glucosidase, putative, ADG31B; hydrolase; HET: 5GF PGE ARG; 1.85A {Cellvibrio japonicus} PDB: 4b9z_A* 4b9y_A* | Back alignment and structure |
|---|
Probab=85.70 E-value=0.44 Score=61.46 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=60.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCCC---CCCC--CccCCCCCHHH
Q psy9001 314 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEV 387 (1351)
Q Consensus 314 ~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~~---~~w~--~~~ln~~~p~v 387 (1351)
.+|-. .++||+++|++|+++++=+-+ |...++. .| .+....+|..++++.. ..|. ..-+|+.||++
T Consensus 319 ~~FPd---p~~mv~~Lh~~G~k~vl~i~P-~I~~~s~----~y~e~~~~g~~vk~~~G~~~~~~~w~G~~~~~DftnP~a 390 (817)
T 4ba0_A 319 ENFPT---PLDMMADFKQQGVKTVLITEP-FVLTSSK----RWDDAVKAKALAKDPQGQPKAFELYFGNGGIIDVFSKEG 390 (817)
T ss_dssp TTCSC---HHHHHHHHHHTTCEEEEEECS-EEETTST----THHHHHHTTCBCBCTTSSBCCEEETTEEEEEBCTTSHHH
T ss_pred ccCCC---HHHHHHHHHHCCCEEEEEeCC-CccCCcH----HHHHHHhCCEEEECCCCCeEEEEecCCCceeecCCCHHH
Confidence 35654 479999999999999996655 4443321 11 1111234444433322 2243 34689999999
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccc
Q psy9001 388 LRFLLSNLRWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 388 ~~~l~~~l~~W~~e~~vDGfR~D~a~ 413 (1351)
|+++.+.++..++ .|||||-.|+..
T Consensus 391 r~ww~~~~~~l~~-~GvDg~W~DmnE 415 (817)
T 4ba0_A 391 SRWFSSIYKDLSK-QGVAGWWGDLGE 415 (817)
T ss_dssp HHHHHHHHHHHHH-HTCCEEEECCTT
T ss_pred HHHHHHHHHHHHh-CCCcEEEecCCC
Confidence 9999998888775 899999999754
|
| >4axn_A Chitinase C1; hydrolase; 1.68A {Serratia marcescens} | Back alignment and structure |
|---|
Probab=85.28 E-value=3.9 Score=46.82 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy9001 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1029 yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l 1108 (1351)
-.+.++|++.|++||++|++|||=+ .+ +.+. + .++.. -|+.+++++
T Consensus 79 ~~~~~~~~~~i~~~~~~g~kvllSi----------GG---~~~~---~---------------~~~~~---~r~~F~~s~ 124 (328)
T 4axn_A 79 NLSDTEFRRQVGVLNSQGRAVLISL----------GG---ADAH---I---------------ELKTG---DEDKLKDEI 124 (328)
T ss_dssp SSCHHHHHHHHHHHHHTTCEEEEEE----------EE---TTCC---C---------------CCCTT---CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEe----------CC---CCCC---c---------------cCChH---HHHHHHHHH
Confidence 3568899999999999999999865 11 0000 0 11222 255677777
Q ss_pred HHHHHHhCCCeEEEcCc
Q psy9001 1109 RWYLEEYQFDGFRFDGV 1125 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a 1125 (1351)
.-.+++|++||+=||-=
T Consensus 125 ~~~l~~ygfDGiDiDwE 141 (328)
T 4axn_A 125 IRLVEVYGFDGLDIDLE 141 (328)
T ss_dssp HHHHHHHCCCEEEEEEC
T ss_pred HHHHHHhCCCeEEEecc
Confidence 77889999999999964
|
| >3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics, unknown function, hydrolase, PSI-2, protein structure initiative; 1.50A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=85.26 E-value=5.5 Score=45.27 Aligned_cols=62 Identities=26% Similarity=0.301 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1110 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~y 1110 (1351)
+..+|++.|++||++|++|+|=+ + + +.+ .....+++.|+.+++++.-
T Consensus 60 ~~~~~~~~i~~~~~~g~kvllsi-----G-----G---~~~--------------------s~~~~~~~~r~~f~~~~~~ 106 (302)
T 3ebv_A 60 TVDQFKADVRAKQAAGKKVIISV-----G-----G---EKG--------------------TVSVNSSASATNFANSVYS 106 (302)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEE-----E-----E---TTC--------------------CCCCCSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCEEEEEE-----E-----C---CCC--------------------CcccCCHHHHHHHHHHHHH
Confidence 46889999999999999999976 0 0 000 0124568999999999999
Q ss_pred HHHHhCCCeEEEcCc
Q psy9001 1111 YLEEYQFDGFRFDGV 1125 (1351)
Q Consensus 1111 Wl~eygVDGFRfD~a 1125 (1351)
.+++|++||+-||-=
T Consensus 107 ~~~~~~~DGiDiD~E 121 (302)
T 3ebv_A 107 VMREYGFDGVDIDLE 121 (302)
T ss_dssp HHHHHTCCEEEEEEC
T ss_pred HHHHhCCCeEEEecc
Confidence 999999999999954
|
| >4ba0_A Alpha-glucosidase, putative, ADG31B; hydrolase; HET: 5GF PGE ARG; 1.85A {Cellvibrio japonicus} PDB: 4b9z_A* 4b9y_A* | Back alignment and structure |
|---|
Probab=85.04 E-value=0.72 Score=59.50 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCC---CCCC--CCCCCCCCHHHHH
Q psy9001 1028 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLR 1102 (1351)
Q Consensus 1028 ~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~---~~w~--~~dlN~~np~Vr~ 1102 (1351)
+|-.+ ++||+++|++|+++++=+-+ |...++.. .. ++....+|..+++|.. ..|- +.-+|+.||++|+
T Consensus 320 ~FPdp---~~mv~~Lh~~G~k~vl~i~P-~I~~~s~~-y~--e~~~~g~~vk~~~G~~~~~~~w~G~~~~~DftnP~ar~ 392 (817)
T 4ba0_A 320 NFPTP---LDMMADFKQQGVKTVLITEP-FVLTSSKR-WD--DAVKAKALAKDPQGQPKAFELYFGNGGIIDVFSKEGSR 392 (817)
T ss_dssp TCSCH---HHHHHHHHHTTCEEEEEECS-EEETTSTT-HH--HHHHTTCBCBCTTSSBCCEEETTEEEEEBCTTSHHHHH
T ss_pred cCCCH---HHHHHHHHHCCCEEEEEeCC-CccCCcHH-HH--HHHhCCEEEECCCCCeEEEEecCCCceeecCCCHHHHH
Confidence 45554 79999999999999996644 44433210 00 0111234444444322 1232 2358999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEcCcc
Q psy9001 1103 FLLSNLRWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1103 ~lid~l~yWl~eygVDGFRfD~a~ 1126 (1351)
+..+.++..++ .|||||=.|+..
T Consensus 393 ww~~~~~~l~~-~GvDg~W~DmnE 415 (817)
T 4ba0_A 393 WFSSIYKDLSK-QGVAGWWGDLGE 415 (817)
T ss_dssp HHHHHHHHHHH-HTCCEEEECCTT
T ss_pred HHHHHHHHHHh-CCCcEEEecCCC
Confidence 99999988765 699999999764
|
| >3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A* | Back alignment and structure |
|---|
Probab=84.94 E-value=2 Score=50.49 Aligned_cols=122 Identities=8% Similarity=0.137 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 398 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W 398 (1351)
.+.|.++|+.|+++||+||||+.-+..... |. +.|-.... + .....=+.+|.+++...+.++..
T Consensus 99 ~~~LD~~i~~A~k~GI~viL~l~~~w~~~G---------G~-~~y~~~~g-~-----~~~~~f~~dp~~~~~~~~~~~~l 162 (383)
T 3pzg_A 99 FERLDYTIAKAKELGIKLIIVLVNNWDDFG---------GM-NQYVRWFG-G-----THHDDFYRDERIKEEYKKYVSFL 162 (383)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCBSSSTTS---------HH-HHHHHHTT-C-----CSTTHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEccccccccC---------Cc-cchhhhcC-C-----CccccccCCHHHHHHHHHHHHHH
Confidence 688999999999999999999863211000 00 00000000 0 00011135789999999999998
Q ss_pred HHHc-CCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEE
Q psy9001 399 LDEY-QFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 463 (1351)
Q Consensus 399 ~~e~-~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~i 463 (1351)
++.. -+.|.++---..++...-..+... ...........+++++.+.||+..|...++
T Consensus 163 ~~r~N~~tG~~y~~~p~I~~w~l~NEp~~-------~~~~~~~~~~~w~~~~~~~IR~~Dp~~lVt 221 (383)
T 3pzg_A 163 INHVNVYTGVPYREEPTIMAWELANELRC-------ETDKSGNTLVEWVKEMSSYIKSLDPNHLVA 221 (383)
T ss_dssp HTCBCTTTCCBGGGCTTEEEEESCBTCCC-------TTCTTSHHHHHHHHHHHHHHHHHCSSSEEE
T ss_pred HhhhccccCcccCCCCcEEEEEecCCCCc-------ccCccHHHHHHHHHHHHHHHHhhCCCceEE
Confidence 8840 122221211111111100000000 000001223478889999999999976543
|
| >2aam_A Hypothetical protein TM1410; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE UNL; 2.20A {Thermotoga maritima} SCOP: c.1.8.15 | Back alignment and structure |
|---|
Probab=84.86 E-value=2.1 Score=48.85 Aligned_cols=81 Identities=16% Similarity=0.382 Sum_probs=58.3
Q ss_pred CCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCc---CChhHHHHHH
Q psy9001 1085 HPLWD-SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN---VDTDALIYLM 1160 (1351)
Q Consensus 1085 ~~~w~-~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~---~d~~~~~fl~ 1160 (1351)
.++|. ..-+|+.++++|++|++-+.--++ -|+|||=+|.+....+... .-|.. ...+.+.+++
T Consensus 104 n~~W~ge~~vDi~~~~w~~i~~~rl~~~~~-kG~DGvflDnvD~y~~~~~------------~~g~~~~~~~~~~~~~i~ 170 (309)
T 2aam_A 104 DPAWPGNYFVKYWYNEWKEIVFSYLDRVID-QGFKGIYLDRIDSFEYWAQ------------EGVISRRSAARKMINFVL 170 (309)
T ss_dssp ETTEEEEEEECTTSHHHHHHHHHHHHHHHH-TTCSEEEEECTTHHHHHHH------------HTSSCHHHHHHHHHHHHH
T ss_pred CCCCCCceEEecCCHHHHHHHHHHHHHHHH-cCCCeEeecccchhhhccc------------cCCcchhhhHHHHHHHHH
Confidence 56774 667999999999999988886666 5999999999975421100 00000 0134578888
Q ss_pred HHHHHHHhhCCCeEEEEc
Q psy9001 1161 VANKFLHDKYPEIITIAE 1178 (1351)
Q Consensus 1161 ~~~~~l~~~~Pd~ilIaE 1178 (1351)
.+.+.+|+.+|+..++.=
T Consensus 171 ~La~~ar~~~P~~~ii~n 188 (309)
T 2aam_A 171 EIAEYVRERKPDMLIIPQ 188 (309)
T ss_dssp HHHHHHHHHCTTCEEEEB
T ss_pred HHHHHHHhhCCCcEEEEe
Confidence 898999999999888743
|
| >1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A | Back alignment and structure |
|---|
Probab=84.02 E-value=0.44 Score=45.87 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=45.7
Q ss_pred ceeEEE-------EEEEEEEee---cCCCCcc-ccceeec----CCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCce
Q psy9001 68 AGLLCF-------MHVVCAAGD---FNNWNRE-EFAYKKL----DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHL 132 (1351)
Q Consensus 68 ~gv~F~-------A~~V~LvGD---FN~Wd~~-~~~M~k~----~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~ 132 (1351)
-.|+|+ .++|.|+|+ +.+|+.. .++|... +++.|++.|.- +.|. .-.|||.+.+.+|..
T Consensus 7 v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~l-p~~~-----~~eYKy~v~~~~g~~ 80 (108)
T 1ac0_A 7 VAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTL-PAGE-----SFEYKFIRIESDDSV 80 (108)
T ss_dssp CCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECC-CSSS-----CEECCCEECCSSSCC
T ss_pred EEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEe-CCCC-----eEEEEEEEEcCCCCE
Confidence 457888 578999996 5689974 6899875 56899999963 4442 258999987555544
Q ss_pred eeccCC
Q psy9001 133 LDRLSP 138 (1351)
Q Consensus 133 ~~~~DP 138 (1351)
.+-.+|
T Consensus 81 ~WE~g~ 86 (108)
T 1ac0_A 81 EWESDP 86 (108)
T ss_dssp CCCCSS
T ss_pred EeccCC
Confidence 444455
|
| >2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=83.58 E-value=4.2 Score=49.30 Aligned_cols=23 Identities=17% Similarity=0.579 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDV 340 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDv 340 (1351)
..+.++++|+.|.++||+||||+
T Consensus 78 ~l~~ld~vv~~a~~~Gl~VIlD~ 100 (491)
T 2y8k_A 78 AVNEIDKIVERTRELGLYLVITI 100 (491)
T ss_dssp THHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEC
Confidence 47889999999999999999997
|
| >4axn_A Chitinase C1; hydrolase; 1.68A {Serratia marcescens} | Back alignment and structure |
|---|
Probab=83.02 E-value=5.7 Score=45.41 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHH
Q psy9001 314 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLS 393 (1351)
Q Consensus 314 ~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~ 393 (1351)
+.-.+..+|++.|++||++|++|||=+ .+ + .+. ..++..+ |+-+++
T Consensus 77 ~~~~~~~~~~~~i~~~~~~g~kvllSi-------GG-~-----~~~------------------~~~~~~~---r~~F~~ 122 (328)
T 4axn_A 77 PYNLSDTEFRRQVGVLNSQGRAVLISL-------GG-A-----DAH------------------IELKTGD---EDKLKD 122 (328)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCEEEEEE-------EE-T-----TCC------------------CCCCTTC---HHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCCCEEEEEe-------CC-C-----CCC------------------ccCChHH---HHHHHH
Confidence 444567899999999999999999743 10 0 000 0112222 456778
Q ss_pred HHHHHHHHcCCCcccccc
Q psy9001 394 NLRWYLDEYQFDGFRFDG 411 (1351)
Q Consensus 394 ~l~~W~~e~~vDGfR~D~ 411 (1351)
++.-.+++|++||+-||-
T Consensus 123 s~~~~l~~ygfDGiDiDw 140 (328)
T 4axn_A 123 EIIRLVEVYGFDGLDIDL 140 (328)
T ss_dssp HHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHhCCCeEEEec
Confidence 888888999999999995
|
| >1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=82.58 E-value=5.2 Score=47.33 Aligned_cols=112 Identities=21% Similarity=0.340 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1110 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~y 1110 (1351)
..+.|+++|+.|.++||+||||+- .....+.+ ++ +.+..+ ...+.++..++..++.++.
T Consensus 112 ~l~~ld~vv~~a~~~Gi~VilDlH---~~pG~qng---~~-------~sG~~~--------~~~w~~~~~~~~~~~~w~~ 170 (408)
T 1h4p_A 112 QESYLDQAIGWARNNSLKVWVDLH---GAAGSQNG---FD-------NSGLRD--------SYKFLEDSNLAVTINVLNY 170 (408)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEE---ECTTCSSC---CG-------GGSSTT--------CCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEECC---CCCCccCC---cc-------CCCCCC--------CCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999974 32222111 10 001011 1234567888888888888
Q ss_pred HHHHhCCC----eE-EEcCcccccccCCCCCCCCCCCcccccCCcCChhH-H-HHHHHHHHHHHhh-CCC-eEEEEccCC
Q psy9001 1111 YLEEYQFD----GF-RFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDA-L-IYLMVANKFLHDK-YPE-IITIAEDVS 1181 (1351)
Q Consensus 1111 Wl~eygVD----GF-RfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~-~-~fl~~~~~~l~~~-~Pd-~ilIaE~~~ 1181 (1351)
.+++|+=+ -. =++++... .+...+.+. . .+.+.+.+.||+. .|+ .++|+|.+.
T Consensus 171 ia~ry~~~~y~~~Vi~~el~NEP------------------~~~~~~~~~~~~~~~~~~~~~IR~~~~~~~~iii~dg~~ 232 (408)
T 1h4p_A 171 ILKKYSAEEYLDIVIGIELINEP------------------LGPVLDMDKMKNDYLAPAYEYLRNNIKSDQVIIIHDAFQ 232 (408)
T ss_dssp HHHHTTSHHHHTTEEEEESCSCC------------------CGGGSCHHHHHHHTHHHHHHHHHHTTCCCCCEEEECTTC
T ss_pred HHHHHcccCCCCeEEEEEeccCC------------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceEeeeccc
Confidence 88887632 21 13333311 111112333 3 6778888999998 664 577787653
|
| >3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=82.03 E-value=1.5 Score=49.81 Aligned_cols=24 Identities=8% Similarity=-0.008 Sum_probs=20.0
Q ss_pred CCcEEEEeecCCccEEEEEec-chh
Q psy9001 704 DNSVRCFEWAPSAQQLYLTGY-NAV 727 (1351)
Q Consensus 704 ~~~~~~~~WaP~A~~v~l~~~-~~~ 727 (1351)
...++|+..+|.|++|+|.|. |+|
T Consensus 169 k~~v~f~~~~~~~~~V~v~GsF~~W 193 (294)
T 3nme_A 169 RKTVTLTLKDKGFSRVEISGLDIGW 193 (294)
T ss_dssp CEEEEEEEECSSCSCEEEEETTTEE
T ss_pred cccceeeeccCCCCEEEEEEeccCC
Confidence 455999999999999999993 554
|
| >1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12 | Back alignment and structure |
|---|
Probab=82.00 E-value=1.6 Score=51.17 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVVHS 1056 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV~N 1056 (1351)
..++|++|++.||+.||+||+||-+.
T Consensus 72 ~~~~~~~l~~~a~~~g~~vi~DVsp~ 97 (385)
T 1x7f_A 72 IVAEFKEIINHAKDNNMEVILDVAPA 97 (385)
T ss_dssp --HHHHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 36899999999999999999998543
|
| >3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125} | Back alignment and structure |
|---|
Probab=80.66 E-value=2.5 Score=50.53 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCEEEEEeecc----cccCCccccCcCCCCCCCccccCC--CCCCCCCCC--CCCCCCCCHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHS----HASKNVLDGLNEFDGTQACFFHDG--PRGTHPLWD--SRLFNYSEIEVLRFLL 1105 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~N----Hts~~~~~~l~~~dg~~~~yf~~~--~~g~~~~w~--~~dlN~~np~Vr~~li 1105 (1351)
.||.|++.+|++||++=|=+.+. +...++ ...++ .|...+ .......|. ..-||+++|+|++++.
T Consensus 95 Gl~~l~~~ih~~Glk~Giw~~p~i~~~~v~~~s-----~~~~~--~~~~~di~~~~~~~~~~~~~~~lD~~~p~~~~~~~ 167 (433)
T 3cc1_A 95 GFKPLSDAIHDLGLKFGIHIMRGIPRQAVYENS-----PVLGS--TKTAREIAHTNSICPWNTDMYGVDPTKEGAQSYYN 167 (433)
T ss_dssp TTHHHHHHHHHTTCEEEEEEESSEEHHHHHHTC-----BCTTS--SCBHHHHEETTCCBTTBTTEEEECTTSTTHHHHHH
T ss_pred CHHHHHHHHHHcCCeeEEEeCCCCchhccCCCC-----ccccc--cceecccccCCcccCCCCCceeecCCCHHHHHHHH
Confidence 69999999999999986654332 111111 01011 111000 000111231 2258999999999998
Q ss_pred HHHHHHHHHhCCCeEEEcCcc
Q psy9001 1106 SNLRWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1106 d~l~yWl~eygVDGFRfD~a~ 1126 (1351)
+.++.+ .++|||.+.+|...
T Consensus 168 ~~~~~l-~~~GvDyvK~D~~~ 187 (433)
T 3cc1_A 168 SLFELY-AQWGVDFVKVDDIA 187 (433)
T ss_dssp HHHHHH-HHTTCCEEEEESCS
T ss_pred HHHHHH-HHcCCCEEEeCCcc
Confidence 777775 67999999999875
|
| >1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* | Back alignment and structure |
|---|
Probab=80.48 E-value=7 Score=46.19 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9001 1030 GTPEQLKYLVDECHKAGLYVLLDVVH 1055 (1351)
Q Consensus 1030 Gt~edfK~LV~~aH~~GI~VILDVV~ 1055 (1351)
.+.+.+..|++.|+++||+||||+-+
T Consensus 86 ~d~~~~~~~a~~Ak~~GLkVlldfHy 111 (399)
T 1ur4_A 86 NDLEKAIQIGKRATANGMKLLADFHY 111 (399)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 45899999999999999999999833
|
| >3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A* | Back alignment and structure |
|---|
Probab=80.02 E-value=6.5 Score=44.42 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEe
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDV 340 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDv 340 (1351)
.+.++++|+.|+++||+||||+
T Consensus 81 ~~~~d~~v~~a~~~Gi~vildl 102 (320)
T 3nco_A 81 LDRVKHVVDVALKNDLVVIINC 102 (320)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEc
Confidence 5778999999999999999997
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1351 | ||||
| d1m7xa3 | 396 | c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enz | 2e-16 | |
| d1m7xa3 | 396 | c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enz | 5e-16 | |
| d1m7xa3 | 396 | c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enz | 2e-04 | |
| d1m7xa2 | 106 | b.71.1.1 (A:623-728) 1,4-alpha-glucan branching en | 5e-15 | |
| d1m7xa2 | 106 | b.71.1.1 (A:623-728) 1,4-alpha-glucan branching en | 5e-12 | |
| d1bf2a3 | 475 | c.1.8.1 (A:163-637) Isoamylase, central domain {Ps | 1e-10 | |
| d1bf2a3 | 475 | c.1.8.1 (A:163-637) Isoamylase, central domain {Ps | 1e-10 | |
| d1m7xa1 | 110 | b.1.18.2 (A:117-226) 1,4-alpha-glucan branching en | 9e-09 | |
| d1m7xa1 | 110 | b.1.18.2 (A:117-226) 1,4-alpha-glucan branching en | 0.002 | |
| d1gcya2 | 357 | c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan m | 1e-07 | |
| d1gcya2 | 357 | c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan m | 1e-07 | |
| d1eh9a3 | 400 | c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrol | 3e-07 | |
| d1eh9a3 | 400 | c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrol | 3e-07 | |
| d1eh9a3 | 400 | c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrol | 0.003 | |
| d1g5aa2 | 554 | c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysacc | 5e-07 | |
| d1g5aa2 | 554 | c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysacc | 5e-06 | |
| d1jaea2 | 378 | c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mea | 1e-06 | |
| d1jaea2 | 378 | c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mea | 1e-06 | |
| d1j0ha3 | 382 | c.1.8.1 (A:124-505) Neopullulanase, central domain | 1e-06 | |
| d1j0ha3 | 382 | c.1.8.1 (A:124-505) Neopullulanase, central domain | 3e-06 | |
| d2d3na2 | 394 | c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillu | 3e-06 | |
| d2d3na2 | 394 | c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillu | 3e-06 | |
| d1iv8a2 | 653 | c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase | 3e-06 | |
| d1iv8a2 | 653 | c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase | 4e-06 | |
| d1g94a2 | 354 | c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoa | 1e-05 | |
| d1g94a2 | 354 | c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoa | 1e-05 | |
| d1m53a2 | 478 | c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Kle | 2e-05 | |
| d1m53a2 | 478 | c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Kle | 3e-05 | |
| d1ht6a2 | 347 | c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hor | 5e-05 | |
| d1ht6a2 | 347 | c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hor | 8e-05 | |
| d1ud2a2 | 390 | c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillu | 6e-05 | |
| d1ud2a2 | 390 | c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillu | 4e-04 | |
| d1gjwa2 | 572 | c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga | 6e-05 | |
| d1gjwa2 | 572 | c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga | 8e-04 | |
| d1mxga2 | 361 | c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeo | 7e-05 | |
| d1mxga2 | 361 | c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeo | 7e-05 | |
| d1hvxa2 | 393 | c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillu | 1e-04 | |
| d1hvxa2 | 393 | c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillu | 1e-04 | |
| d1e43a2 | 393 | c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera | 2e-04 | |
| d1e43a2 | 393 | c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera | 2e-04 | |
| d1uoka2 | 479 | c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus | 3e-04 | |
| d1uoka2 | 479 | c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus | 3e-04 | |
| d1ua7a2 | 344 | c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillu | 5e-04 | |
| d1ua7a2 | 344 | c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillu | 6e-04 | |
| d1hx0a2 | 403 | c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus s | 6e-04 | |
| d1hx0a2 | 403 | c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus s | 8e-04 | |
| d2bhua3 | 420 | c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydro | 0.002 |
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Score = 80.4 bits (197), Expect = 2e-16
Identities = 57/207 (27%), Positives = 89/207 (42%), Gaps = 3/207 (1%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
FGT + +Y +D H AGL V+LD V H + L EFDGT D G H W
Sbjct: 86 FGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDD-FALAEFDGTNLYEHSDPREGYHQDW 144
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
++ ++NY EV FL+ N ++++ + D R D V SM+Y ++ FG
Sbjct: 145 NTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDY--SRKEGEWIPNEFG 202
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIRPDMS 495
+ +A+ +L N+ L ++ +T+AE+ + P RP GG GF Y+ +
Sbjct: 203 GRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHD 262
Query: 496 DMTVGTFDAAMNTTEERFKWLSADPGY 522
+ D Y
Sbjct: 263 TLDYMKLDPVYRQYHHDKLTFGILYNY 289
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Score = 79.7 bits (195), Expect = 5e-16
Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 3/180 (1%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
FGT + +Y +D H AGL V+LD V H + L EFDGT D G H W
Sbjct: 86 FGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDD-FALAEFDGTNLYEHSDPREGYHQDW 144
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1148
++ ++NY EV FL+ N +++E + D R D V SM+Y ++ FG
Sbjct: 145 NTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDY--SRKEGEWIPNEFG 202
Query: 1149 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQH 1208
+ +A+ +L N+ L ++ +T+AE+ + P RP GG GF Y+
Sbjct: 203 GRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHD 262
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Score = 42.7 bits (99), Expect = 2e-04
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 723 GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
G+ ++L+ I EH + S+GYQ T +A + R
Sbjct: 54 GFTHLELLPINEHPFDGSWGYQPTGLYAPTRR 85
|
| >d1m7xa2 b.71.1.1 (A:623-728) 1,4-alpha-glucan branching enzyme {Escherichia coli [TaxId: 562]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: 1,4-alpha-glucan branching enzyme species: Escherichia coli [TaxId: 562]
Score = 69.9 bits (171), Expect = 5e-15
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 38/133 (28%)
Query: 511 ERFKWLSADPGYVSTKHEGDKVIIFERAG-----LLFAFNFNGTQSFTDYRYCSTQSYST 565
F+WL D + V+IF R ++ A NF DYR+
Sbjct: 2 YGFEWLVVD-------DKERSVLIFVRRDKEGNEIIVASNFTP-VPRHDYRF-------- 45
Query: 566 HNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNS 625
G+ Q GK++ +L++D H+ G N + GTV + + R++S
Sbjct: 46 ----------------GINQPGKWREILNTDSMHYHGSNAGNGGTV-HSDEIASHGRQHS 88
Query: 626 IKLYLPTRTGLIL 638
+ L LP + L
Sbjct: 89 LSLTLPPLATIWL 101
|
| >d1m7xa2 b.71.1.1 (A:623-728) 1,4-alpha-glucan branching enzyme {Escherichia coli [TaxId: 562]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: 1,4-alpha-glucan branching enzyme species: Escherichia coli [TaxId: 562]
Score = 61.4 bits (149), Expect = 5e-12
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1214 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGII 1271
R G+ Q GK++ +L++D H+ G N + GTV + + R++S+ L LP I
Sbjct: 44 RFGINQPGKWREILNTDSMHYHGSNAGNGGTV-HSDEIASHGRQHSLSLTLPPLATIW 100
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} Length = 475 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Score = 63.1 bits (152), Expect = 1e-10
Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 14/164 (8%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK--------NVLDGLNEFDGTQACFFHDG 367
G + + +V H AG+ V +DVV++H ++ + + G +++
Sbjct: 107 GGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYEL 166
Query: 368 PRGTHPLWDSRL----FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCG 423
G +D+ FN ++ +L ++ + DGFRFD + +
Sbjct: 167 TSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGNSCL--N 224
Query: 424 EGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV 467
++ + DA + N+ L + +
Sbjct: 225 GAYTASAPNCPNGGYNFDAADSNVAINRILREFTVRPAAGGSGL 268
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} Length = 475 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Score = 63.1 bits (152), Expect = 1e-10
Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 14/164 (8%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK--------NVLDGLNEFDGTQACFFHDG 1080
G + + +V H AG+ V +DVV++H ++ + + G +++
Sbjct: 107 GGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYEL 166
Query: 1081 PRGTHPLWDSRL----FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCG 1136
G +D+ FN ++ +L ++ DGFRFD + +
Sbjct: 167 TSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGNSCL--N 224
Query: 1137 EGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV 1180
++ + DA + N+ L + +
Sbjct: 225 GAYTASAPNCPNGGYNFDAADSNVAINRILREFTVRPAAGGSGL 268
|
| >d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N species: Escherichia coli [TaxId: 562]
Score = 52.3 bits (125), Expect = 9e-09
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 72 CFMHVVCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHG 130
+ VV G FN W+ + + G WEL +P +G K + + +G
Sbjct: 32 RRVSVV---GQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQL-------YKYEMIDANG 81
Query: 131 HLLDRLSPWATYVTEPP 147
+L + P+A P
Sbjct: 82 NLRLKSDPYAFEAQMRP 98
|
| >d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N species: Escherichia coli [TaxId: 562]
Score = 37.2 bits (86), Expect = 0.002
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 955 GDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 1009
G FN W+ + + G WEL +P +G K + + +G+L +
Sbjct: 38 GQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQL-------YKYEMIDANGNLRLK 86
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Score = 53.4 bits (127), Expect = 1e-07
Identities = 32/202 (15%), Positives = 54/202 (26%), Gaps = 12/202 (5%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+G+ QL+ AG+ VL DVV +H ++ D Q + +D +
Sbjct: 89 YGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPN 148
Query: 376 DSRL----------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEG 425
D N +V +Y GFRFD V
Sbjct: 149 DCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAP--ERVNSW 206
Query: 426 FSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD 485
+ D F + + + +II D + P + E
Sbjct: 207 MTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQIIKDWSDRAKCPVFDFALKERMQNGS 266
Query: 486 YRLEIRPDMSDMTVGTFDAAMN 507
+ + A+
Sbjct: 267 IADWKHGLNGNPDPRWREVAVT 288
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Score = 53.0 bits (126), Expect = 1e-07
Identities = 30/171 (17%), Positives = 48/171 (28%), Gaps = 12/171 (7%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+G+ QL+ AG+ VL DVV +H ++ D Q + +D +
Sbjct: 89 YGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPN 148
Query: 1089 DSRL----------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEG 1138
D N +V +Y GFRFD V
Sbjct: 149 DCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAP--ERVNSW 206
Query: 1139 FSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRP 1189
+ D F + + + +II D + P
Sbjct: 207 MTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQIIKDWSDRAKCPVFDFA 257
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Score = 52.0 bits (123), Expect = 3e-07
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+G PE + LVDE HK GL V+LDVV++H G + P G +
Sbjct: 74 YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPE--GNYMVKLGPYFSQKYKTPWGLTFNF 131
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGC 1135
D + V +F+L N+ ++++EY DGFR D V +++ +
Sbjct: 132 DDAESDE----VRKFILENVEYWIKEYNVDGFRLDAVHAIIDTSPKH 174
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Score = 52.0 bits (123), Expect = 3e-07
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+G PE + LVDE HK GL V+LDVV++H G + P G +
Sbjct: 74 YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPE--GNYMVKLGPYFSQKYKTPWGLTFNF 131
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGC 422
D + V +F+L N+ +++ EY DGFR D V +++ +
Sbjct: 132 DDAESDE----VRKFILENVEYWIKEYNVDGFRLDAVHAIIDTSPKH 174
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Score = 39.3 bits (90), Expect = 0.003
Identities = 33/272 (12%), Positives = 69/272 (25%), Gaps = 17/272 (6%)
Query: 723 GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR---------------TMGNSQSVDPASI 767
G A+++M I + +GY +A + G +D
Sbjct: 42 GITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYN 101
Query: 768 HIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYL 827
H+ + + +Y+ +GL NF + + E
Sbjct: 102 HVGPEGNYMVKLGPYFSQKYKT--PWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGF 159
Query: 828 NPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKK 887
E Y + R+ NPK + + +
Sbjct: 160 RLDAVHAIIDTSPKHILEEIADVVHKYNRIVIAESDLNDPRVVNPKEKCGYNIDAQWVDD 219
Query: 888 PENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWEL 947
+ + +D V+ V G ++N+ R+ +
Sbjct: 220 FHHSIHAYLTGERQGYYTDFGNLDDIVKSYKDVFVYDGKYSNFRRKTHGEPVGELDGCNF 279
Query: 948 VLPPNPDGDFNNWNREEFAYKKLDFGKWELVL 979
V+ N + E K +D +++
Sbjct: 280 VVYIQNHDQVGNRGKGERIIKLVDRESYKIAA 311
|
| >d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} Length = 554 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Score = 51.5 bits (122), Expect = 5e-07
Identities = 37/344 (10%), Positives = 84/344 (24%), Gaps = 36/344 (10%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ--ACFFHDGPRGTHP 373
GT L+ ++ H+AG+ ++D + +H S G F++ P P
Sbjct: 159 LGTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMP 218
Query: 374 LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 433
R F + + + N+ F E
Sbjct: 219 DQYDRTLREI------FPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPWVFRAMAGEM 272
Query: 434 FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIRPD 493
L ++ + + + + + A + ++ E
Sbjct: 273 LFLANLGVDILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMRIAAPAVFFKSEAIVH 332
Query: 494 MSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFT 553
+ + E + + + +V + +A T
Sbjct: 333 PDQVV-----QYIGQDECQIGYNPLQMALLWNTLATREVNLLHQALTYRHNLPEHTAWVN 387
Query: 554 DYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYE 613
R +H+ W + +G+ + + + F G G ++
Sbjct: 388 YVR--------SHDDIGWTFADEDAAYLGISGYDHRQFLNRFFVNRFDG--SFARGVPFQ 437
Query: 614 TYPEPWNNRRNSIKLYLPTRTG-------------LILTTSPGT 644
P + R + L I ++ G
Sbjct: 438 YNPSTGDCRVSGTAAALVGLAQDDPHAVDRIKLLYSIALSTGGL 481
|
| >d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} Length = 554 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Score = 48.4 bits (114), Expect = 5e-06
Identities = 23/169 (13%), Positives = 47/169 (27%), Gaps = 14/169 (8%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ--ACFFHDGPRGTHP 1086
GT L+ ++ H+AG+ ++D + +H S G F++ P P
Sbjct: 159 LGTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMP 218
Query: 1087 LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 1146
R F + + + + N+ F E
Sbjct: 219 DQYDRTLREI------FPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPWVFRAMAGEM 272
Query: 1147 FGLNVDT------DALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRP 1189
L DA+ ++ + P+ + + + P
Sbjct: 273 LFLANLGVDILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMRIAAP 321
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Score = 50.3 bits (119), Expect = 1e-06
Identities = 24/154 (15%), Positives = 40/154 (25%), Gaps = 22/154 (14%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN-------------------VLDGLNEF 356
G + C+ AG+ + +D V +H + V G +F
Sbjct: 71 SGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDF 130
Query: 357 DGTQACFFHDGPRGTHPLWDSRL--FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTS 414
+ L N V L+ + +D GFR D
Sbjct: 131 HSPCEVNNYQDADNVRNCELVGLRDLNQGSDYVRGVLIDYMNHMID-LGVAGFRVDAAKH 189
Query: 415 MLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMV 448
M + + + +G IY V
Sbjct: 190 MSPGDLSVIFSGLKNLNTDYGFADGARPFIYQEV 223
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Score = 50.3 bits (119), Expect = 1e-06
Identities = 23/154 (14%), Positives = 40/154 (25%), Gaps = 22/154 (14%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN-------------------VLDGLNEF 1069
G + C+ AG+ + +D V +H + V G +F
Sbjct: 71 SGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDF 130
Query: 1070 DGTQACFFHDGPRGTHPLWDSRL--FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTS 1127
+ L N V L+ + + + GFR D
Sbjct: 131 HSPCEVNNYQDADNVRNCELVGLRDLNQGSDYVRGVLIDYMNHMI-DLGVAGFRVDAAKH 189
Query: 1128 MLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMV 1161
M + + + +G IY V
Sbjct: 190 MSPGDLSVIFSGLKNLNTDYGFADGARPFIYQEV 223
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Score = 49.7 bits (117), Expect = 1e-06
Identities = 37/202 (18%), Positives = 65/202 (32%), Gaps = 17/202 (8%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL---------------DGLNEFDGTQ 1073
FG E LK L+D CH+ G+ V+LD V +H D + +
Sbjct: 96 FGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPL 155
Query: 1074 ACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSML--YH 1131
+ N + EV R+LL +++ E+ DG+R D + +
Sbjct: 156 QTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFW 215
Query: 1132 NHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVT 1191
E + D Y + DA+ +L YP + + S R
Sbjct: 216 REFRQEVKALKPDVYILGEIWHDAMPWLRGDQFDAVMNYPFTDGVLRFFAKEEISARQFA 275
Query: 1192 EGGTGFDYRLGQYLHQHSILFP 1213
+ +++ +
Sbjct: 276 NQMMHVLHSYPNNVNEAAFNLL 297
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Score = 48.5 bits (114), Expect = 3e-06
Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 17/148 (11%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL---------------DGLNEFDGTQ 360
FG E LK L+D CH+ G+ V+LD V +H D + +
Sbjct: 96 FGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPL 155
Query: 361 ACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSML--YH 418
+ N + EV R+LL +++ E+ DG+R D + +
Sbjct: 156 QTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFW 215
Query: 419 NHGCGEGFSGHYDEYFGLNVDTDALIYL 446
E + D Y + DA+ +L
Sbjct: 216 REFRQEVKALKPDVYILGEIWHDAMPWL 243
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Score = 48.8 bits (115), Expect = 3e-06
Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 2/119 (1%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GT QL+ V G+ V DVV +H D + + T
Sbjct: 75 YGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGA--DATEMVRAVEVNPNNRNQEVTGEYT 132
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 434
+ S + D + + + +Y G G+ + D
Sbjct: 133 IEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWDWEVDTEN 191
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Score = 48.5 bits (114), Expect = 3e-06
Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 2/119 (1%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+GT QL+ V G+ V DVV +H D + + T
Sbjct: 75 YGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGA--DATEMVRAVEVNPNNRNQEVTGEYT 132
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1147
+ S + D + + + +Y G G+ + D
Sbjct: 133 IEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWDWEVDTEN 191
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 653 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Score = 49.2 bits (117), Expect = 3e-06
Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 10/150 (6%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---------VLDGLNEFDGTQACFFHD 366
G ++ + L++ H GL ++ D+V +H + N + G T FF +
Sbjct: 62 LGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVNSLNWRLMDVLKMGKKSKYYTYFDFFPE 121
Query: 367 GPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLY-HNHGCGEG 425
+ P+ L +L+ + ++L+ +++ + +
Sbjct: 122 DDKIRLPILGEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIYDTLQKQNYTL 181
Query: 426 FSGHYDEYFGLNVDTDALIYLMVANKFLHD 455
S + D + LI + V +
Sbjct: 182 MSWKNPPSYRRFFDVNTLIGVNVEKDHVFQ 211
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 653 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Score = 48.8 bits (116), Expect = 4e-06
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1059
G ++ + L++ H GL ++ D+V +H +
Sbjct: 62 LGGEKEYRRLIETAHTIGLGIIQDIVPNHMA 92
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Score = 46.8 bits (110), Expect = 1e-05
Identities = 27/193 (13%), Positives = 53/193 (27%), Gaps = 38/193 (19%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV-------LDGLNEFDGTQACFFHDGP 1081
G Q +V+ C AG+ + +D + +H + G F FH+
Sbjct: 61 GGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHESC 120
Query: 1082 RGTHPLW-------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 1128
+ + + + V + + + + GFRFD +
Sbjct: 121 TINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYINDL-QAIGVKGFRFDASKHV 179
Query: 1129 -----------------LYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 1171
++ G + EY + T+ + N F +
Sbjct: 180 AASDIQSLMAKVNGSPVVFQEVIDQGGEAVGASEYLSTGLVTEFKYSTELGNTFRNGSLA 239
Query: 1172 EIITIAEDVSGMP 1184
+ E MP
Sbjct: 240 WLSNFGEGWGFMP 252
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Score = 46.8 bits (110), Expect = 1e-05
Identities = 27/193 (13%), Positives = 52/193 (26%), Gaps = 38/193 (19%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV-------LDGLNEFDGTQACFFHDGP 368
G Q +V+ C AG+ + +D + +H + G F FH+
Sbjct: 61 GGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHESC 120
Query: 369 RGTHPLW-------------DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415
+ + + + V + + + GFRFD +
Sbjct: 121 TINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYINDLQA-IGVKGFRFDASKHV 179
Query: 416 -----------------LYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 458
++ G + EY + T+ + N F +
Sbjct: 180 AASDIQSLMAKVNGSPVVFQEVIDQGGEAVGASEYLSTGLVTEFKYSTELGNTFRNGSLA 239
Query: 459 EIITIAEDVSGMP 471
+ E MP
Sbjct: 240 WLSNFGEGWGFMP 252
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} Length = 478 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Score = 46.2 bits (108), Expect = 2e-05
Identities = 33/232 (14%), Positives = 60/232 (25%), Gaps = 32/232 (13%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVH-----SHASKNVLDGLNEFDGTQACFFHDGPRG 370
+GT E LV E K + +++DVV H F+ DG
Sbjct: 75 YGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDN 134
Query: 371 THP--------------------------LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQF 404
P N+ +V L + LR++LD
Sbjct: 135 QPPNNYPSFFGGSAWQKDAKSGQYYLHYFARQQPDLNWDNPKVREDLYAMLRFWLD-KGV 193
Query: 405 DGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 464
G RFD V + + + + Y+ N+ + +Y
Sbjct: 194 SGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMGPNIHRYIQEMNRKVLSRYDVATAGE 253
Query: 465 EDVSGMPASCRPVTEGGTGFDYRLEIRPDMSDMTVGTFDAAMNTTEERFKWL 516
+ S + + D + + +F+ +
Sbjct: 254 IFGVPLDRSSQFFDRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFRQI 305
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} Length = 478 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Score = 45.8 bits (107), Expect = 3e-05
Identities = 30/202 (14%), Positives = 53/202 (26%), Gaps = 32/202 (15%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVH-----SHASKNVLDGLNEFDGTQACFFHDGPRG 1083
+GT E LV E K + +++DVV H F+ DG
Sbjct: 75 YGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDN 134
Query: 1084 THP--------------------------LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQF 1117
P N+ +V L + LR++L +
Sbjct: 135 QPPNNYPSFFGGSAWQKDAKSGQYYLHYFARQQPDLNWDNPKVREDLYAMLRFWL-DKGV 193
Query: 1118 DGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 1177
G RFD V + + + + Y+ N+ + +Y
Sbjct: 194 SGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMGPNIHRYIQEMNRKVLSRYDVATAGE 253
Query: 1178 EDVSGMPASCRPVTEGGTGFDY 1199
+ S + +
Sbjct: 254 IFGVPLDRSSQFFDRRRHELNM 275
|
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Score = 44.9 bits (105), Expect = 5e-05
Identities = 35/206 (16%), Positives = 57/206 (27%), Gaps = 23/206 (11%)
Query: 313 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL--------NEFDGTQACFF 364
A +G +LK L+ H G+ + D+V +H + D DG
Sbjct: 62 ASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGP 121
Query: 365 HDGPRGTHPLWDSRL-------------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDG 411
H R D ++ V R L L W + FD +R D
Sbjct: 122 HMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDF 181
Query: 412 VTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMP 471
Y G V + + D + + + D G
Sbjct: 182 A--RGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGA 239
Query: 472 ASCRPVTEGGTGFDYRLEIRPDMSDM 497
AS V + T + ++ +
Sbjct: 240 ASAGMVFDFTTKGILNAAVEGELWRL 265
|
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Score = 44.2 bits (103), Expect = 8e-05
Identities = 25/121 (20%), Positives = 37/121 (30%), Gaps = 21/121 (17%)
Query: 1026 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL--------NEFDGTQACFF 1077
A +G +LK L+ H G+ + D+V +H + D DG
Sbjct: 62 ASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGP 121
Query: 1078 HDGPRGTHPLWDSRL-------------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDG 1124
H R D ++ V R L L W + FD +R D
Sbjct: 122 HMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDF 181
Query: 1125 V 1125
Sbjct: 182 A 182
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} Length = 390 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Score = 44.7 bits (104), Expect = 6e-05
Identities = 32/256 (12%), Positives = 69/256 (26%), Gaps = 9/256 (3%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GT QL+ + + V DVV +H G + + QA + R
Sbjct: 77 YGTKAQLERAIGSLKSNDINVYGDVVMNHKM-----GADFTEAVQAVQVNPTNRWQDISG 131
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
+ ++ + + + + F+G +D + ++ DE G
Sbjct: 132 AYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENG 191
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIRPDMS 495
N D + ++ + D+ + + D + R F Y +
Sbjct: 192 -NYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDL-DGYRLDAIKHIPFWYTSDWVRHQR 249
Query: 496 DMTVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDY 555
+ ++ L E + A G+ +
Sbjct: 250 NEADQDLFVVGEYWKDDVGALEFYLDE--MNWEMSLFDVPLNYNFYRASQQGGSYDMRNI 307
Query: 556 RYCSTQSYSTHNTWTW 571
S + T+
Sbjct: 308 LRGSLVEAHPMHAVTF 323
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} Length = 390 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Score = 42.0 bits (97), Expect = 4e-04
Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 5/119 (4%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+GT QL+ + + V DVV +H G + + QA + R
Sbjct: 77 YGTKAQLERAIGSLKSNDINVYGDVVMNHKM-----GADFTEAVQAVQVNPTNRWQDISG 131
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1147
+ ++ + + + + F+G +D + ++ DE
Sbjct: 132 AYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEEN 190
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 572 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 45.0 bits (105), Expect = 6e-05
Identities = 25/282 (8%), Positives = 64/282 (22%), Gaps = 29/282 (10%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQACFFHDGPRGTH 372
F E+ K V+ CH G+ V+LD + A+++ + + + F + D
Sbjct: 178 FKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRA 237
Query: 373 PLWDSRLF-------------------------NYSEIEVLRFLLSNLRWYLDEYQFDGF 407
++ N + + + L+ F
Sbjct: 238 EELPFKVPDEDELEIIYNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNILE-LIVKEF 296
Query: 408 RFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV 467
+ + L+ + +L +
Sbjct: 297 GIITPPGFSDLINDPQPTWDDVTFLRLYLDHPEASKRFLDPNQPPYVLYDVIKASKFPGK 356
Query: 468 SGMPASCRPVTEGGTGFDYRLEIRPDMSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKH 527
+ + + I DM ++ + K ++ +
Sbjct: 357 EPNRELWEYLAGVIPHYQKKYGIDGARLDMGHALPKELLDLIIKNVKEYDPAFVMIAEEL 416
Query: 528 EGDKVIIFERAGLLFAFNFNGTQSFTDYRYCSTQSYSTHNTW 569
+ +K + AG + + +
Sbjct: 417 DMEKDKASKEAGYDVILGSSWYFAGRVEEIGKLPDIAEELVL 458
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 572 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 41.2 bits (95), Expect = 8e-04
Identities = 22/173 (12%), Positives = 46/173 (26%), Gaps = 30/173 (17%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQACFFHDGPRGTH 1085
F E+ K V+ CH G+ V+LD + A+++ + + + F + D
Sbjct: 178 FKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRA 237
Query: 1086 PLWDSRLF-------------------------NYSEIEVLRFLLSNLRWYLEEYQFDGF 1120
++ N + + + L E F
Sbjct: 238 EELPFKVPDEDELEIIYNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNIL-ELIVKEF 296
Query: 1121 RFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEI 1173
+ + L+ +A + N+ + Y I
Sbjct: 297 GIITPPGFSDLINDPQPTWDDVTFLRLYLD-HPEASKRFLDPNQPPYVLYDVI 348
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Score = 44.5 bits (104), Expect = 7e-05
Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 21/164 (12%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP-- 1086
FG+ E+L L+ H G+ V+ DVV +H + L+ F G +
Sbjct: 83 FGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTAN 142
Query: 1087 ----------------LWDSRLFNYSEIEVLRFLLSNLR---WYLEEYQFDGFRFDGVTS 1127
+ + +L + YL FDG+RFD V
Sbjct: 143 YLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKG 202
Query: 1128 MLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 1171
+ G + + + DAL+ + +P
Sbjct: 203 YGAWVVRDWLNWWGGWAVGEYWDTNVDALLSWAYESGAKVFDFP 246
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Score = 44.5 bits (104), Expect = 7e-05
Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 21/164 (12%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP-- 373
FG+ E+L L+ H G+ V+ DVV +H + L+ F G +
Sbjct: 83 FGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTAN 142
Query: 374 ----------------LWDSRLFNYSEIEVLRFLLSNLR---WYLDEYQFDGFRFDGVTS 414
+ + +L + YL FDG+RFD V
Sbjct: 143 YLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKG 202
Query: 415 MLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 458
+ G + + + DAL+ + +P
Sbjct: 203 YGAWVVRDWLNWWGGWAVGEYWDTNVDALLSWAYESGAKVFDFP 246
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 43.4 bits (101), Expect = 1e-04
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 10/119 (8%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GT Q + H AG+ V DVV H + + GT+ +
Sbjct: 78 YGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQ 137
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 434
F++ +++ + FDGV F G +
Sbjct: 138 AWTKFDFPGRG----------NTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAWD 186
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 43.4 bits (101), Expect = 1e-04
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 10/119 (8%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+GT Q + H AG+ V DVV H + + GT+ +
Sbjct: 78 YGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQ 137
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1147
F++ +++ + FDGV F G +
Sbjct: 138 AWTKFDFPGRG----------NTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAWD 186
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Score = 43.0 bits (100), Expect = 2e-04
Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 10/132 (7%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN-------VLDGLNEFDGTQACFFHDGP 1081
+GT +L+ + H + V DVV +H + ++ + +
Sbjct: 75 YGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIK 134
Query: 1082 RGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSG 1141
T + R YS+ + + W F+F G +G
Sbjct: 135 AWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGK---AWDWEVSSENG 191
Query: 1142 HYDEYFGLNVDT 1153
+YD +VD
Sbjct: 192 NYDYLMYADVDY 203
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Score = 43.0 bits (100), Expect = 2e-04
Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 7/122 (5%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GT +L+ + H + V DVV +H + + + A + R
Sbjct: 75 YGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGA-----DATEDVTAVEVNPANRNQETSE 129
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDG--VTSMLYHNHGCGEGFSGHYDEY 433
+ ++ +++ + + Y FDG +D S ++ G G+ +
Sbjct: 130 EYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWDWEVSSE 189
Query: 434 FG 435
G
Sbjct: 190 NG 191
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} Length = 479 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Score = 42.3 bits (98), Expect = 3e-04
Identities = 31/205 (15%), Positives = 58/205 (28%), Gaps = 36/205 (17%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL-----NEFDGTQACFFHDGPRG 370
FGT E L+ E H+ + +++D+V +H S + + + G G
Sbjct: 75 FGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEG 134
Query: 371 THPLWDSRLFNYSEIE--------------------------VLRFLLSNLRWYLDEYQF 404
P F+ S + V + + ++++L E
Sbjct: 135 KEPNNWGAAFSGSAWQYDEMTDEYYLHLFSKKQPDLNWDNEKVRQDVYEMMKFWL-EKGI 193
Query: 405 DGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDA---LIYLMVANKFLHDKYPEII 461
DGFR D + + G + G + YL N+ + Y +
Sbjct: 194 DGFRMDVIN-FISKEEGLPTVETEEEGYVSGHKHFMNGPNIHKYLHEMNEEVLSHYDIMT 252
Query: 462 TIAEDVSGMPASCRPVTEGGTGFDY 486
+ E
Sbjct: 253 VGEMPGVTTEEAKLYTGEERKELQM 277
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} Length = 479 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Score = 42.3 bits (98), Expect = 3e-04
Identities = 31/205 (15%), Positives = 58/205 (28%), Gaps = 36/205 (17%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL-----NEFDGTQACFFHDGPRG 1083
FGT E L+ E H+ + +++D+V +H S + + + G G
Sbjct: 75 FGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEG 134
Query: 1084 THPLWDSRLFNYSEIE--------------------------VLRFLLSNLRWYLEEYQF 1117
P F+ S + V + + ++++L E
Sbjct: 135 KEPNNWGAAFSGSAWQYDEMTDEYYLHLFSKKQPDLNWDNEKVRQDVYEMMKFWL-EKGI 193
Query: 1118 DGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDA---LIYLMVANKFLHDKYPEII 1174
DGFR D + + G + G + YL N+ + Y +
Sbjct: 194 DGFRMDVIN-FISKEEGLPTVETEEEGYVSGHKHFMNGPNIHKYLHEMNEEVLSHYDIMT 252
Query: 1175 TIAEDVSGMPASCRPVTEGGTGFDY 1199
+ E
Sbjct: 253 VGEMPGVTTEEAKLYTGEERKELQM 277
|
| >d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus subtilis [TaxId: 1423]
Score = 41.5 bits (96), Expect = 5e-04
Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 11/130 (8%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRG----- 370
GT ++ K + + G+ V++D V +H + + NE +
Sbjct: 71 LGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDR 130
Query: 371 ----THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM-LYHNHGCGEG 425
+ L +N +V +L L L+ DGFRFD + L + G
Sbjct: 131 WDVTQNSLLGLYDWNTQNTQVQSYLKRFLERALN-DGADGFRFDAAKHIELPDDGSYGSQ 189
Query: 426 FSGHYDEYFG 435
F +
Sbjct: 190 FWPNITNTSA 199
|
| >d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus subtilis [TaxId: 1423]
Score = 41.5 bits (96), Expect = 6e-04
Identities = 25/130 (19%), Positives = 43/130 (33%), Gaps = 11/130 (8%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRG----- 1083
GT ++ K + + G+ V++D V +H + + NE +
Sbjct: 71 LGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDR 130
Query: 1084 ----THPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM-LYHNHGCGEG 1138
+ L +N +V +L L L DGFRFD + L + G
Sbjct: 131 WDVTQNSLLGLYDWNTQNTQVQSYLKRFLERAL-NDGADGFRFDAAKHIELPDDGSYGSQ 189
Query: 1139 FSGHYDEYFG 1148
F +
Sbjct: 190 FWPNITNTSA 199
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 41.4 bits (96), Expect = 6e-04
Identities = 23/196 (11%), Positives = 49/196 (25%), Gaps = 19/196 (9%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
G + + +V C+ G+ + +D V +H G GT + + P
Sbjct: 73 SGNENEFRDMVTRCNNVGVRIYVDAVINHMCG---SGAAAGTGTTCGSYCNPGNREFPAV 129
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGF--------------RFDGVTSMLYHNHG 1134
+++++ + + D R +
Sbjct: 130 PYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDI 189
Query: 1135 CGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGG 1194
GF ++ L L N E + + + G
Sbjct: 190 GVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVIDLGGEAIKSSEYFG 249
Query: 1195 TG--FDYRLGQYLHQH 1208
G +++ G L
Sbjct: 250 NGRVTEFKYGAKLGTV 265
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 41.0 bits (95), Expect = 8e-04
Identities = 26/222 (11%), Positives = 53/222 (23%), Gaps = 21/222 (9%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
G + + +V C+ G+ + +D V +H G GT + + P
Sbjct: 73 SGNENEFRDMVTRCNNVGVRIYVDAVINHMCG---SGAAAGTGTTCGSYCNPGNREFPAV 129
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGF--------------RFDGVTSMLYHNHG 421
+++++ + + D R +
Sbjct: 130 PYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDI 189
Query: 422 CGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGG 481
GF ++ L L N E + + + G
Sbjct: 190 GVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVIDLGGEAIKSSEYFG 249
Query: 482 TG----FDYRLEIRPDMSDMTVGTFDAAMNTTEERFKWLSAD 519
G F Y ++ + + N E S
Sbjct: 250 NGRVTEFKYGAKLGTVVRKWSGEKMSYLKNWGEGWGFMPSDR 291
|
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Score = 39.7 bits (91), Expect = 0.002
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 723 GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
G A+Q+M + +GY +F+A +
Sbjct: 47 GVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAP 78
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1351 | |||
| d2bhua3 | 420 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1eh9a3 | 400 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 100.0 | |
| d1m7xa3 | 396 | 1,4-alpha-glucan branching enzyme, central domain | 100.0 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 100.0 | |
| d1m7xa3 | 396 | 1,4-alpha-glucan branching enzyme, central domain | 100.0 | |
| d1ea9c3 | 382 | Maltogenic amylase, central domain {Bacillus sp., | 100.0 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d1ea9c3 | 382 | Maltogenic amylase, central domain {Bacillus sp., | 100.0 | |
| d1h3ga3 | 422 | Cyclomaltodextrinase, central domain {Flavobacteri | 100.0 | |
| d1h3ga3 | 422 | Cyclomaltodextrinase, central domain {Flavobacteri | 100.0 | |
| d1qhoa4 | 407 | Cyclodextrin glycosyltransferase {Bacillus stearot | 100.0 | |
| d2bhua3 | 420 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d1lwha2 | 391 | 4-alpha-glucanotransferase {Thermotoga maritima [T | 100.0 | |
| d1bf2a3 | 475 | Isoamylase, central domain {Pseudomonas amyloderam | 100.0 | |
| d1qhoa4 | 407 | Cyclodextrin glycosyltransferase {Bacillus stearot | 100.0 | |
| d1wzaa2 | 409 | Bacterial alpha-amylase {Halothermothrix orenii [T | 100.0 | |
| d2guya2 | 381 | Fungal alpha-amylases {Aspergillus oryzae, Taka-am | 100.0 | |
| d3bmva4 | 406 | Cyclodextrin glycosyltransferase {Thermoanaerobact | 100.0 | |
| d1lwha2 | 391 | 4-alpha-glucanotransferase {Thermotoga maritima [T | 100.0 | |
| d1wzaa2 | 409 | Bacterial alpha-amylase {Halothermothrix orenii [T | 100.0 | |
| d1uoka2 | 479 | Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 13 | 100.0 | |
| d1m53a2 | 478 | Isomaltulose synthase PalI {Klebsiella sp., lx3 [T | 100.0 | |
| d1bf2a3 | 475 | Isoamylase, central domain {Pseudomonas amyloderam | 100.0 | |
| d2guya2 | 381 | Fungal alpha-amylases {Aspergillus oryzae, Taka-am | 100.0 | |
| d1uoka2 | 479 | Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 13 | 100.0 | |
| d2aaaa2 | 381 | Fungal alpha-amylases {Aspergillus niger, acid amy | 100.0 | |
| d1m53a2 | 478 | Isomaltulose synthase PalI {Klebsiella sp., lx3 [T | 100.0 | |
| d3bmva4 | 406 | Cyclodextrin glycosyltransferase {Thermoanaerobact | 100.0 | |
| d2fhfa5 | 563 | Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 | 100.0 | |
| d2aaaa2 | 381 | Fungal alpha-amylases {Aspergillus niger, acid amy | 100.0 | |
| d1eh9a3 | 400 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 100.0 | |
| d1ji1a3 | 432 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d1ji1a3 | 432 | Maltogenic amylase, central domain {Thermoactinomy | 99.98 | |
| d2fhfa5 | 563 | Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 | 99.98 | |
| d1gjwa2 | 572 | Maltosyltransferase {Thermotoga maritima [TaxId: 2 | 99.97 | |
| d2d3na2 | 394 | Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: | 99.97 | |
| d1ua7a2 | 344 | Bacterial alpha-amylase {Bacillus subtilis [TaxId: | 99.97 | |
| d1ht6a2 | 347 | Plant alpha-amylase {Barley (Hordeum vulgare), AMY | 99.97 | |
| d1g5aa2 | 554 | Amylosucrase {Neisseria polysaccharea [TaxId: 489] | 99.97 | |
| d1g5aa2 | 554 | Amylosucrase {Neisseria polysaccharea [TaxId: 489] | 99.97 | |
| d1e43a2 | 393 | Bacterial alpha-amylase {Chimera (Bacillus amyloli | 99.97 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 99.97 | |
| d1jaea2 | 378 | Animal alpha-amylase {Yellow mealworm (Tenebrio mo | 99.97 | |
| d1ua7a2 | 344 | Bacterial alpha-amylase {Bacillus subtilis [TaxId: | 99.96 | |
| d1g94a2 | 354 | Bacterial alpha-amylase {Pseudoalteromonas halopla | 99.96 | |
| d1gjwa2 | 572 | Maltosyltransferase {Thermotoga maritima [TaxId: 2 | 99.96 | |
| d1hx0a2 | 403 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 99.96 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 99.96 | |
| d1ht6a2 | 347 | Plant alpha-amylase {Barley (Hordeum vulgare), AMY | 99.95 | |
| d2d3na2 | 394 | Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: | 99.95 | |
| d1mxga2 | 361 | Bacterial alpha-amylase {Archaeon Pyrococcus woese | 99.95 | |
| d1e43a2 | 393 | Bacterial alpha-amylase {Chimera (Bacillus amyloli | 99.95 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 99.95 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 99.94 | |
| d1mxga2 | 361 | Bacterial alpha-amylase {Archaeon Pyrococcus woese | 99.94 | |
| d1jaea2 | 378 | Animal alpha-amylase {Yellow mealworm (Tenebrio mo | 99.94 | |
| d1g94a2 | 354 | Bacterial alpha-amylase {Pseudoalteromonas halopla | 99.93 | |
| d1r7aa2 | 434 | Sucrose phosphorylase {Bifidobacterium adolescenti | 99.92 | |
| d1r7aa2 | 434 | Sucrose phosphorylase {Bifidobacterium adolescenti | 99.92 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 99.91 | |
| d1hx0a2 | 403 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 99.91 | |
| d1iv8a2 | 653 | Maltooligosyl trehalose synthase {Archaeon Sulfolo | 99.85 | |
| d1m7xa2 | 106 | 1,4-alpha-glucan branching enzyme {Escherichia col | 99.78 | |
| d1iv8a2 | 653 | Maltooligosyl trehalose synthase {Archaeon Sulfolo | 99.72 | |
| d1m7xa1 | 110 | 1,4-alpha-glucan branching enzyme, N-terminal doma | 99.49 | |
| d1m7xa1 | 110 | 1,4-alpha-glucan branching enzyme, N-terminal doma | 99.48 | |
| d2fhfa1 | 115 | Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 | 99.25 | |
| d1eh9a1 | 90 | Glycosyltrehalose trehalohydrolase, N-terminal dom | 98.98 | |
| d2bhua1 | 97 | Glycosyltrehalose trehalohydrolase, N-terminal dom | 98.78 | |
| d1bf2a1 | 162 | Isoamylase, N-terminal domain N {Pseudomonas amylo | 98.71 | |
| d2fhfa1 | 115 | Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 | 98.69 | |
| d1eh9a1 | 90 | Glycosyltrehalose trehalohydrolase, N-terminal dom | 98.55 | |
| d2bhua1 | 97 | Glycosyltrehalose trehalohydrolase, N-terminal dom | 98.37 | |
| d1bf2a1 | 162 | Isoamylase, N-terminal domain N {Pseudomonas amylo | 97.61 | |
| d2qlvb1 | 87 | SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} | 97.57 | |
| d1ji1a2 | 83 | Maltogenic amylase {Thermoactinomyces vulgaris, TV | 97.36 | |
| d1wzla2 | 83 | Maltogenic amylase {Thermoactinomyces vulgaris, TV | 97.18 | |
| d1z0na1 | 87 | 5'-AMP-activated protein kinase subunit beta-1 {Ra | 97.17 | |
| d1ea9c2 | 80 | Maltogenic amylase {Bacillus sp., cyclomaltodextri | 97.1 | |
| d1j0ha2 | 83 | Neopullulanase {Bacillus stearothermophilus [TaxId | 96.61 | |
| d1zy9a2 | 348 | Alpha-galactosidase GalA catalytic domain {Thermot | 96.18 | |
| d1uoka1 | 79 | Oligo-1,6-glucosidase {Bacillus cereus [TaxId: 139 | 95.98 | |
| d1m53a1 | 78 | Isomaltulose synthase PalI {Klebsiella sp., lx3 [T | 95.8 | |
| d1zy9a2 | 348 | Alpha-galactosidase GalA catalytic domain {Thermot | 95.7 | |
| d1g5aa1 | 74 | Amylosucrase {Neisseria polysaccharea [TaxId: 489] | 94.87 | |
| d1ecea_ | 358 | Endocellulase E1 {Acidothermus cellulolyticus [Tax | 94.39 | |
| d2pb1a1 | 394 | Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) | 94.34 | |
| d2f2ha4 | 338 | Putative glucosidase YicI, domain 2 {Escherichia c | 94.21 | |
| d2f2ha4 | 338 | Putative glucosidase YicI, domain 2 {Escherichia c | 94.08 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 94.04 | |
| d1ceoa_ | 340 | Endoglucanase CelC {Clostridium thermocellum [TaxI | 93.93 | |
| d1edta_ | 265 | Endo-beta-N-acetylglucosaminidase {Streptomyces pl | 92.8 | |
| d1x1na1 | 523 | Amylomaltase MalQ {Potato (Solanum tuberosum) [Tax | 92.12 | |
| d1rh9a1 | 370 | Beta-mannanase {Tomato (Lycopersicon esculentum) [ | 91.7 | |
| d1tz7a1 | 485 | Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363] | 91.24 | |
| d1cyga3 | 89 | Cyclodextrin glycosyltransferase {Bacillus stearot | 91.04 | |
| d1edta_ | 265 | Endo-beta-N-acetylglucosaminidase {Streptomyces pl | 90.9 | |
| d1h4pa_ | 408 | Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom | 90.41 | |
| d3bmva3 | 89 | Cyclodextrin glycosyltransferase {Thermoanaerobact | 90.35 | |
| d2aama1 | 285 | Hypothetical protein TM1410 {Thermotoga maritima [ | 89.59 | |
| d1eswa_ | 500 | Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]} | 89.41 | |
| d1x7fa2 | 244 | Outer surface protein, N-terminal domain {Bacillus | 89.16 | |
| d1foba_ | 334 | Beta-1,4-galactanase {Fungus (Aspergillus aculeatu | 88.95 | |
| d1vjza_ | 325 | Endoglucanase homologue TM1752 {Thermotoga maritim | 88.9 | |
| d2ebna_ | 285 | Endo-beta-N-acetylglucosaminidase {Flavobacterium | 88.59 | |
| d1ceoa_ | 340 | Endoglucanase CelC {Clostridium thermocellum [TaxI | 87.84 | |
| d1z0na1 | 87 | 5'-AMP-activated protein kinase subunit beta-1 {Ra | 87.61 | |
| d1cxla3 | 90 | Cyclodextrin glycosyltransferase {Bacillus circula | 87.53 | |
| d2qlvb1 | 87 | SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} | 87.02 | |
| d1x7fa2 | 244 | Outer surface protein, N-terminal domain {Bacillus | 87.01 | |
| d1x1na1 | 523 | Amylomaltase MalQ {Potato (Solanum tuberosum) [Tax | 86.6 | |
| d1uuqa_ | 410 | Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | 86.46 | |
| d1hjsa_ | 332 | Beta-1,4-galactanase {Thielavia heterothallica, ak | 86.36 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 85.07 | |
| d1ua7a1 | 78 | Bacterial alpha-Amylase {Bacillus subtilis [TaxId: | 83.92 | |
| d2pb1a1 | 394 | Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) | 83.81 | |
| d1qnra_ | 344 | Beta-mannanase {Trichoderma reesei [TaxId: 51453]} | 83.8 | |
| d2ebna_ | 285 | Endo-beta-N-acetylglucosaminidase {Flavobacterium | 83.24 | |
| d1rh9a1 | 370 | Beta-mannanase {Tomato (Lycopersicon esculentum) [ | 82.83 | |
| d2c0ha1 | 350 | endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed | 82.61 | |
| d2aama1 | 285 | Hypothetical protein TM1410 {Thermotoga maritima [ | 82.27 | |
| d1eoka_ | 282 | Endo-beta-N-acetylglucosaminidase {Flavobacterium | 81.5 | |
| d1wzla1 | 120 | Maltogenic amylase, N-terminal domain N {Thermoact | 81.32 | |
| d1tz7a1 | 485 | Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363] | 80.58 | |
| d1wzaa1 | 79 | Bacterial alpha-Amylase {Halothermothrix orenii [T | 80.44 | |
| d1vjza_ | 325 | Endoglucanase homologue TM1752 {Thermotoga maritim | 80.14 |
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=3.9e-40 Score=390.18 Aligned_cols=207 Identities=26% Similarity=0.381 Sum_probs=157.0
Q ss_pred CCccccCCCCCC--CCceEEEeecCCcccCCCcccccccccccccceeccCCCcccccccccccccCCceEEEecCCCCC
Q psy9001 877 KHKWTSSKPKKP--ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPD 954 (1351)
Q Consensus 877 ~~~w~~~~p~~p--~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~ 954 (1351)
.|+|+.+.++.+ +++||||+|||.|+.+ |+|++++++ |++||+|| ++ +||.+.|
T Consensus 1 ~~~w~~~~~~~~~~~~~viYe~~~~~f~~~---Gd~~g~~~~-ldyl~~LG-v~--------------~i~L~Pv----- 56 (420)
T d2bhua3 1 TFDWTDADWHGIKLADCVFYEVHVGTFTPE---GTYRAAAEK-LPYLKELG-VT--------------AIQVMPL----- 56 (420)
T ss_dssp SSCCCCTTCCCCCGGGCCEEEECHHHHSSS---CSHHHHHHT-HHHHHHHT-CC--------------EEEECCC-----
T ss_pred CcCCCCCCCCCCCccccEEEEEehhhcCCC---CCHHHHHHh-HHHHHHcC-CC--------------EEEeCCC-----
Confidence 378887775533 7999999999999854 777777763 67777766 22 2233221
Q ss_pred CCCcccccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHH
Q psy9001 955 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPE 1033 (1351)
Q Consensus 955 g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~e 1033 (1351)
.+ +....+||| ++||++|||+|||++
T Consensus 57 ----------------------------------------------~~-------~~~~~~~GY~~~d~~~vdp~~G~~~ 83 (420)
T d2bhua3 57 ----------------------------------------------AA-------FDGQRGWGYDGAAFYAPYAPYGRPE 83 (420)
T ss_dssp ----------------------------------------------EE-------CSSSCCCSTTCCEEEEECGGGCCHH
T ss_pred ----------------------------------------------Cc-------CCCCCCCCCCcccCCCcCcccCCHH
Confidence 11 011246899 999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLE 1113 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~ 1113 (1351)
|||+||++||++||+||||+|+||++.++ .++..+. +.+|... ..+. ++.+||++||+||++|+++++||++
T Consensus 84 d~~~lv~~aH~~gi~VilD~V~NH~~~~~-~~~~~~~---~~~~~~~---~~~~-~~~dlN~~np~v~~~~~~~~~~Wl~ 155 (420)
T d2bhua3 84 DLMALVDAAHRLGLGVFLDVVYNHFGPSG-NYLSSYA---PSYFTDR---FSSA-WGMGLDYAEPHMRRYVTGNARMWLR 155 (420)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSCCCSSS-CCHHHHC---GGGEEEE---EECS-SSEEECTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccccccccCCCC-ccccccc---ccccccc---cccc-ccccccccChHHHHHHHHHhheeee
Confidence 99999999999999999999999999988 3443322 2222211 1112 3468999999999999999999999
Q ss_pred HhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q psy9001 1114 EYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPV 1190 (1351)
Q Consensus 1114 eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~ 1190 (1351)
++||||||||+|.+|.+. ....++.++++.+++..|++++|||.|.+.+.+....
T Consensus 156 ~~GVDGfR~D~~~~l~~~----------------------~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~ 210 (420)
T d2bhua3 156 DYHFDGLRLDATPYMTDD----------------------SETHILTELAQEIHELGGTHLLLAEDHRNLPDLVTVN 210 (420)
T ss_dssp HHCCSEEEETTGGGCCCC----------------------SSSCHHHHHHHHHHTTCSCCEEEEECSSCCTHHHHTT
T ss_pred cccccEEEEeeeeeeccc----------------------cccccHHHHHHHHHhhcCCceeeecccCCchhhhccc
Confidence 999999999999988421 1224678899999999999999999998887766543
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Probab=100.00 E-value=3.2e-39 Score=378.52 Aligned_cols=262 Identities=21% Similarity=0.287 Sum_probs=168.9
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCC
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 1092 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~d 1092 (1351)
.+||| +.||++|||+|||++|||+||++||++||+||||+|+|||+.++. ++... ..||...... ...+..+.
T Consensus 58 ~~~GY~~~d~~~vd~~~Gt~~dlk~lv~~~h~~gi~VilD~V~NH~s~~~~-~~~~~----~~~~~~~~~~-~~~~~~~~ 131 (400)
T d1eh9a3 58 RDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGN-YMVKL----GPYFSQKYKT-PWGLTFNF 131 (400)
T ss_dssp CCCSTTCCCTTCBCSTTCCHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSC-CHHHH----SCCSCSSCCC-SSSCCCCS
T ss_pred CCCCCCCCCCCCcCcccCCHHHHHHHHHHHHhcCCceeeecccccccCCCc-chhhh----cccccccccc-cccccccc
Confidence 46899 899999999999999999999999999999999999999999883 22211 1233222111 11123446
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCC
Q psy9001 1093 FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 1172 (1351)
Q Consensus 1093 lN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd 1172 (1351)
++++||+|+++|+++++||+++|||||||||+|.+|... ....+++++++.+++. +
T Consensus 132 ~~~~np~v~~~l~d~~~~Wl~~~gvDGfR~Daa~~i~~~----------------------~~~~~~~~~~~~~~~~--~ 187 (400)
T d1eh9a3 132 DDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAIIDT----------------------SPKHILEEIADVVHKY--N 187 (400)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHSCCCCEEETTGGGCCCC----------------------SSSCHHHHHHHHHHHT--T
T ss_pred ccccccHHHHHHHHHHHHHHhhcccceEEeechhhhcch----------------------hhhhhHHHHHHHHhhh--h
Confidence 788999999999999999999999999999999988421 1223567788888764 5
Q ss_pred eEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCC----CCCCCccc----cCCCc
Q psy9001 1173 IITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDC----SHFGGFNR----LDPGT 1244 (1351)
Q Consensus 1173 ~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~----~~~~gf~r----~~~~~ 1244 (1351)
.++++|.+...+..+.+...++.+++..+...++. ..+..+..+. ..+..... .....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (400)
T d1eh9a3 188 RIVIAESDLNDPRVVNPKEKCGYNIDAQWVDDFHH--------------SIHAYLTGERQGYYTDFGNLDDIVKSYKDVF 253 (400)
T ss_dssp CCEEECCCSCCTTTTSCGGGTCCCCSEEECHHHHH--------------HHHHHHSCCCSGGGGGCCSHHHHHHHHHSSC
T ss_pred hhhhhhccccCccccchhhhccceeccccccccch--------------hhHhhhcccccchhhhhhhhHHHHHHhhhhh
Confidence 57788888788888888777777777655543322 1111111000 00000000 00000
Q ss_pred ccccccCCcccccCccccccCCCCccceeeecccCCCCCcC--CcccccccCCHHHHHHHHHHHHccCCccEEEee-ccc
Q psy9001 1245 VYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERN--NENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIE 1321 (1351)
Q Consensus 1245 ~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn--~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~ 1321 (1351)
........+.... ......... ....++|++|||+.++ ...++......+++|+|++++||+||+||||+| |+.
T Consensus 254 ~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~a~a~~l~~pGiP~iy~G~E~G 330 (400)
T d1eh9a3 254 VYDGKYSNFRRKT--HGEPVGELD-GCNFVVYIQNHDQVGNRGKGERIIKLVDRESYKIAAALYLLSPYIPMIFMGEEYG 330 (400)
T ss_dssp SCSSEEETTTTEE--ECCCCCSCC-GGGEECCSCCHHHHHTTTTCCCGGGGSCHHHHHHHHHHHHSSSSCCEEESSGGGT
T ss_pred ccchhHHHHHHHh--cccchhhhc-ccchhhhhhhccccccccchhhhHHHhhhhHHHHHHHHHHhCCCCCEEECChhhC
Confidence 1111000000000 000000001 1112789999998655 344666677788999999999999999999999 554
Q ss_pred C
Q psy9001 1322 K 1322 (1351)
Q Consensus 1322 ~ 1322 (1351)
.
T Consensus 331 ~ 331 (400)
T d1eh9a3 331 E 331 (400)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=2.6e-38 Score=369.22 Aligned_cols=324 Identities=18% Similarity=0.171 Sum_probs=211.8
Q ss_pred CCCceEEEeecCCcccCCCcccccc----cccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccC
Q psy9001 888 PENLKIYESHVGICTQEQKCASYED----FVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNRE 963 (1351)
Q Consensus 888 p~d~iIYE~HV~~~s~~~~~gty~~----f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~ 963 (1351)
.+++||||+||+.|+.....+.-.. ....-.+.-..-|+|.++..++++|+++|++.++|+
T Consensus 9 ~~~~viY~v~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kldyl~~LGv~~i~L~--------------- 73 (382)
T d1j0ha3 9 VKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLGITGIYLT--------------- 73 (382)
T ss_dssp GGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEEC---------------
T ss_pred hhCCEEEEEEcchhcCCCCCCCccccccccccCCccCccCCcCHHHHHHhHHHHHHcCCCEEEeC---------------
Confidence 3688999999999985432221100 011111222334788888888888888887554444
Q ss_pred ccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHH
Q psy9001 964 EFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDEC 1042 (1351)
Q Consensus 964 ~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~a 1042 (1351)
|.+.++++||| +.||++|+|+|||++|||+||++|
T Consensus 74 --------------------------------------------Pi~~~~~~~gy~~~d~~~vd~~~Gt~~~~~~lv~~a 109 (382)
T d1j0ha3 74 --------------------------------------------PIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRC 109 (382)
T ss_dssp --------------------------------------------CCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHH
T ss_pred --------------------------------------------CCCcCCcccCCCcccccccCCCCCCHHHHHHHHHHh
Confidence 11123346888 899999999999999999999999
Q ss_pred HHcCCEEEEEeecccccCCccccCc----CCCCCCCccccCCC-------CCCCC----CCCCCCCCCCCHHHHHHHHHH
Q psy9001 1043 HKAGLYVLLDVVHSHASKNVLDGLN----EFDGTQACFFHDGP-------RGTHP----LWDSRLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1043 H~~GI~VILDVV~NHts~~~~~~l~----~~dg~~~~yf~~~~-------~g~~~----~w~~~dlN~~np~Vr~~lid~ 1107 (1351)
|++||+||||||+||++.++..... ........||.... ..... ..+..+||++||+||++|+++
T Consensus 110 H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~vr~~l~~~ 189 (382)
T d1j0ha3 110 HEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDV 189 (382)
T ss_dssp HHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSSCSBCBSTTCTTSBBBCTTSHHHHHHHHHH
T ss_pred hhccceEEEEeeecccccccccchhhhccCCccccCCccccccccccccccccccccccCCCCcccccChHHHHHHHHHH
Confidence 9999999999999999998732110 00112223333111 11111 114568999999999999999
Q ss_pred HHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q psy9001 1108 LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASC 1187 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~ 1187 (1351)
+++|+++|||||||||++.+| ...+++++.+.+++.+|+++++||.|.......
T Consensus 190 ~~~wi~~~giDGfR~Da~~~~--------------------------~~~~~~~~~~~~~~~~p~~~~i~e~~~~~~~~~ 243 (382)
T d1j0ha3 190 ATYWIREFDIDGWRLDVANEI--------------------------DHEFWREFRQEVKALKPDVYILGEIWHDAMPWL 243 (382)
T ss_dssp HHHHHHHHCCCEEEETTGGGS--------------------------CHHHHHHHHHHHHHHCTTCEEEECCSSCCGGGC
T ss_pred HHhHhhhccccEEEecchhhc--------------------------chhhhhhhhhhhhccCCCccccccccccchhhh
Confidence 999999999999999999988 456788899999999999999999886543322
Q ss_pred cccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCC
Q psy9001 1188 RPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTR 1267 (1351)
Q Consensus 1188 ~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~ 1267 (1351)
.+.+|+..++..++ ...+..+..+......+.. ... ........-.+..
T Consensus 244 -----~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~ 292 (382)
T d1j0ha3 244 -----RGDQFDAVMNYPFT--------------DGVLRFFAKEEISARQFAN-------QMM-----HVLHSYPNNVNEA 292 (382)
T ss_dssp -----SSSSCSEEBCHHHH--------------HHHHHHHTSCCSCHHHHHH-------HHH-----HHHHTSCHHHHHT
T ss_pred -----cccccccccccccc--------------hhhhhhhhcccccchhhhh-------hhh-----hcccccccccCcc
Confidence 23344433222111 1122222111000000000 000 0000000000111
Q ss_pred CccceeeecccCCCCCcCCcccccccC--CHHHHHHHHHHHHccCCccEEEee-cccCCCCccceeeccCCcc
Q psy9001 1268 TGIIDEVNLLNNVREERNNENNMKRYI--QTESNMNGFGIQTLPTQSPLYLVA-KIEKPCSTREVVKAPLPFG 1337 (1351)
Q Consensus 1268 ~~~~~~vnfv~nHD~~rn~~~r~~~~~--~~~~~r~A~allltspGiP~If~g-~~~~~~~~~~~~~~p~~~~ 1337 (1351)
. ++|++|||+.|. .... ..+++|+|++++||+||+||||+| |+...+.....++.||+|.
T Consensus 293 ~-----~~f~~nHD~~R~-----~~~~~~~~~~~~~a~~lllt~pG~P~iy~G~E~G~~~~~~~~~r~~~~W~ 355 (382)
T d1j0ha3 293 A-----FNLLGSHDTSRI-----LTVCGGDIRKVKLLFLFQLTFTGSPCIYYGDEIGMTGGNDPECRKCMVWD 355 (382)
T ss_dssp C-----BCBSCCTTSCCH-----HHHTTTCHHHHHHHHHHHHHSSSCCEEETTGGGTCCCCSTTGGGCCCCCC
T ss_pred c-----eeeccCCCCCcc-----ccccCChHHHHHHHHHHHHHcCCCCEEEcChhhCcCCCCCcccccCCCCC
Confidence 1 789999998753 2222 347889999999999999999999 8999999999999999996
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-37 Score=357.83 Aligned_cols=217 Identities=27% Similarity=0.481 Sum_probs=160.9
Q ss_pred CCceEEEEecCCcc---CCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccc
Q psy9001 177 DNLKIYESHVGICT---QEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 253 (1351)
Q Consensus 177 ~~~vIYE~hvr~ft---~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~ 253 (1351)
.+++|||+|||+|+ +++..|+|+||++++|||||+||||+ |||||||+ + +.
T Consensus 15 ~~~~iYe~~~~~f~~~~~~~~~g~~~gi~~klidyl~~LGv~~----iwl~Pi~~--------------------~--~~ 68 (396)
T d1m7xa3 15 APISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTH----LELLPINE--------------------H--PF 68 (396)
T ss_dssp SCCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSE----EEESCCEE--------------------C--SC
T ss_pred CCcEEEEEccCccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCE----EEeCCCCC--------------------C--CC
Confidence 45899999999996 34668999999999669999999999 99999543 3 32
Q ss_pred cCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcC
Q psy9001 254 AESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 333 (1351)
Q Consensus 254 ~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~G 333 (1351)
. .+|||++.||+ +++ |+|||.+|||+||++||++|
T Consensus 69 ~-----~~hGY~~~d~~---------------------~vd-------------------p~~Gt~~d~~~LV~~aH~~g 103 (396)
T d1m7xa3 69 D-----GSWGYQPTGLY---------------------APT-------------------RRFGTRDDFRYFIDAAHAAG 103 (396)
T ss_dssp G-----GGTTSSCSEEE---------------------EEC-------------------GGGSCHHHHHHHHHHHHHTT
T ss_pred C-----CCCCcCcCcCC---------------------CcC-------------------cccCCHHHHHHHHHHHhhhh
Confidence 2 35999999999 776 99999999999999999999
Q ss_pred CEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccc
Q psy9001 334 LYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 334 I~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~ 413 (1351)
|+||||+|+||++.++.+... +......++..........|+...+|+++|+++.++.+++++|+.+|||||||+|++.
T Consensus 104 i~VilD~V~NH~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvDG~R~D~~~ 182 (396)
T d1m7xa3 104 LNVILDWVPGHFPTDDFALAE-FDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVA 182 (396)
T ss_dssp CEEEEEECTTSCCCSTTSSTT-GGGSCSSBCC-----------CCCBCTTSHHHHHHHHHHHHHHHHHSCCCEEEECCSH
T ss_pred hhhhhcccccccCCccccccc-ccCCccccccCCCCCCCCCCCCccccCCCchhHHHHHHHHHHHHHHhCCcceeeechh
Confidence 999999999999988654321 1111111112222334567788899999999999999999999999999999999988
Q ss_pred ccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcC
Q psy9001 414 SMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV 467 (1351)
Q Consensus 414 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~ 467 (1351)
.+...+... ..........+.....+.++|++.++..++...|+.++++|++
T Consensus 183 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 234 (396)
T d1m7xa3 183 SMIYRDYSR--KEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEES 234 (396)
T ss_dssp HHHCC----------------CTTCCHHHHHHHHHHHHHHHHSSTTCEEEECCS
T ss_pred hhccchhcc--cccccccccccccccchHHHHHHHHHHHHhhhCCCceEEEeec
Confidence 764433211 1111112233445566788999999999999999999999986
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=3.2e-37 Score=359.94 Aligned_cols=245 Identities=19% Similarity=0.268 Sum_probs=190.3
Q ss_pred CCCCCCceEEEEecCCccCCC---------------------CCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccc
Q psy9001 173 PKKPDNLKIYESHVGICTQEQ---------------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDED 231 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~ft~~~---------------------~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~ 231 (1351)
|.+++++||||+||+.|+..+ ..|||+|++++ |||||+||||+ |||||||+
T Consensus 6 P~w~~~~viY~v~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~k-ldyl~~LGv~~----i~L~Pi~~--- 77 (382)
T d1j0ha3 6 PDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDH-LDYLVDLGITG----IYLTPIFR--- 77 (382)
T ss_dssp CGGGGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHT-HHHHHHHTCCE----EEECCCEE---
T ss_pred CcchhCCEEEEEEcchhcCCCCCCCccccccccccCCccCccCCcCHHHHHHh-HHHHHHcCCCE----EEeCCCCc---
Confidence 445799999999999996321 12899999999 99999999999 99999543
Q ss_pred cCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccc
Q psy9001 232 WNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECH 311 (1351)
Q Consensus 232 ~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~ 311 (1351)
. + .+|||++.+|| +++
T Consensus 78 -----------------~--~-------~~~gy~~~d~~---------------------~vd----------------- 93 (382)
T d1j0ha3 78 -----------------S--P-------SNHKYDTADYF---------------------EVD----------------- 93 (382)
T ss_dssp -----------------C--S-------SSSCCSCSEEE---------------------EEC-----------------
T ss_pred -----------------C--C-------cccCCCccccc---------------------ccC-----------------
Confidence 2 1 24999999999 777
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC----CCCCCcCcccC-------CCCCCC----CCC
Q psy9001 312 KAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF----DGTQACFFHDG-------PRGTHP----LWD 376 (1351)
Q Consensus 312 id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f----~g~~~~yy~~~-------~~~~~~----~w~ 376 (1351)
|++||+++||+||++||++||+||||+|+||++.++.+..... ....+.||... +..... ..+
T Consensus 94 --~~~Gt~~~~~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (382)
T d1j0ha3 94 --PHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQ 171 (382)
T ss_dssp --TTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSSCSBCBSTTCTT
T ss_pred --CCCCCHHHHHHHHHHhhhccceEEEEeeecccccccccchhhhccCCccccCCccccccccccccccccccccccCCC
Confidence 9999999999999999999999999999999998875432110 01112222211 111111 113
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhh
Q psy9001 377 SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDK 456 (1351)
Q Consensus 377 ~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~ 456 (1351)
..+||+.+|+||++|++++++|+++|||||||||+|.+| ..++++++.+.+++.
T Consensus 172 ~~dln~~n~~vr~~l~~~~~~wi~~~giDGfR~Da~~~~--------------------------~~~~~~~~~~~~~~~ 225 (382)
T d1j0ha3 172 MPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEI--------------------------DHEFWREFRQEVKAL 225 (382)
T ss_dssp SBBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS--------------------------CHHHHHHHHHHHHHH
T ss_pred CcccccChHHHHHHHHHHHHhHhhhccccEEEecchhhc--------------------------chhhhhhhhhhhhcc
Confidence 478999999999999999999999999999999999988 245778888888888
Q ss_pred CCCeEEEEEcC---------------------------------------------------------------------
Q psy9001 457 YPEIITIAEDV--------------------------------------------------------------------- 467 (1351)
Q Consensus 457 ~P~~~~iaE~~--------------------------------------------------------------------- 467 (1351)
.|+++++||.|
T Consensus 226 ~p~~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~R~ 305 (382)
T d1j0ha3 226 KPDVYILGEIWHDAMPWLRGDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLHSYPNNVNEAAFNLLGSHDTSRI 305 (382)
T ss_dssp CTTCEEEECCSSCCGGGCSSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTSCHHHHHTCBCBSCCTTSCCH
T ss_pred CCCccccccccccchhhhcccccccccccccchhhhhhhhcccccchhhhhhhhhcccccccccCccceeeccCCCCCcc
Confidence 88888888886
Q ss_pred ---------------------CCCCCcccccccCCCCCCCcCC-----cCCCCCCCcHHHHHHHHHHhhhcccccc
Q psy9001 468 ---------------------SGMPASCRPVTEGGTGFDYRLE-----IRPDMSDMTVGTFDAAMNTTEERFKWLS 517 (1351)
Q Consensus 468 ---------------------~~~p~~~~~~~~gg~gfd~~~~-----~~~d~~~~sl~~f~k~L~~Lr~~~~~L~ 517 (1351)
+|.|.|+++.|.|-.|-+...+ |........+.+|+|+||+||+++|+|+
T Consensus 306 ~~~~~~~~~~~~~a~~lllt~pG~P~iy~G~E~G~~~~~~~~~r~~~~W~~~~~~~~l~~~~k~L~~lR~~~paL~ 381 (382)
T d1j0ha3 306 LTVCGGDIRKVKLLFLFQLTFTGSPCIYYGDEIGMTGGNDPECRKCMVWDPMQQNKELHQHVKQLIALRKQYRSLR 381 (382)
T ss_dssp HHHTTTCHHHHHHHHHHHHHSSSCCEEETTGGGTCCCCSTTGGGCCCCCCTTTSCHHHHHHHHHHHHHHHHCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHcCCCCEEEcChhhCcCCCCCcccccCCCCCccccChHHHHHHHHHHHHHhcCHHhC
Confidence 6889999988877443332222 4333356789999999999999999986
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-37 Score=357.01 Aligned_cols=340 Identities=23% Similarity=0.323 Sum_probs=208.1
Q ss_pred ceEEEeecCCcccCC---CcccccccccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccce
Q psy9001 891 LKIYESHVGICTQEQ---KCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAY 967 (1351)
Q Consensus 891 ~iIYE~HV~~~s~~~---~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y 967 (1351)
++|||+|||.||.+. .+|+|++++++.||+|++|| +|. ||...
T Consensus 17 ~~iYe~~~~~f~~~~~~~~~g~~~gi~~klidyl~~LG-v~~--------------iwl~P------------------- 62 (396)
T d1m7xa3 17 ISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMG-FTH--------------LELLP------------------- 62 (396)
T ss_dssp CEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTT-CSE--------------EEESC-------------------
T ss_pred cEEEEEccCccCCCCCCCCCCCHHHHHHHHHHHHHHcC-CCE--------------EEeCC-------------------
Confidence 689999999998653 36888888887678888888 331 22211
Q ss_pred ecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcC
Q psy9001 968 KKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 1046 (1351)
Q Consensus 968 ~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~G 1046 (1351)
..++ ....+||| ++||++|||+|||++|||+||++||++|
T Consensus 63 --------------------------------i~~~-------~~~~~hGY~~~d~~~vdp~~Gt~~d~~~LV~~aH~~g 103 (396)
T d1m7xa3 63 --------------------------------INEH-------PFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAG 103 (396)
T ss_dssp --------------------------------CEEC-------SCGGGTTSSCSEEEEECGGGSCHHHHHHHHHHHHHTT
T ss_pred --------------------------------CCCC-------CCCCCCCcCcCcCCCcCcccCCHHHHHHHHHHHhhhh
Confidence 1111 12367999 9999999999999999999999999999
Q ss_pred CEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcc
Q psy9001 1047 LYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1047 I~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~ 1126 (1351)
|+||||+|+||++.++. +.........+++..........|+...+|+++|++++++.+++++|+++||+||||+|++.
T Consensus 104 i~VilD~V~NH~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvDG~R~D~~~ 182 (396)
T d1m7xa3 104 LNVILDWVPGHFPTDDF-ALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVA 182 (396)
T ss_dssp CEEEEEECTTSCCCSTT-SSTTGGGSCSSBCC-----------CCCBCTTSHHHHHHHHHHHHHHHHHSCCCEEEECCSH
T ss_pred hhhhhcccccccCCccc-ccccccCCccccccCCCCCCCCCCCCccccCCCchhHHHHHHHHHHHHHHhCCcceeeechh
Confidence 99999999999999873 22222111111222222334556788899999999999999999999999999999999998
Q ss_pred cccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccc
Q psy9001 1127 SMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLH 1206 (1351)
Q Consensus 1127 ~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h 1206 (1351)
.+...+... ..+....++.+.....+.+.+++.++..++...|+.++++|.+.+.+.+..........+++.+...+.
T Consensus 183 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (396)
T d1m7xa3 183 SMIYRDYSR--KEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWM 260 (396)
T ss_dssp HHHCC----------------CTTCCHHHHHHHHHHHHHHHHSSTTCEEEECCSSCCTTTTBCTTTTBSCCSEEECHHHH
T ss_pred hhccchhcc--cccccccccccccccchHHHHHHHHHHHHhhhCCCceEEEeecCCCccccccccccccchhhhhccchh
Confidence 775543221 111122334444556778999999999999999999999999888777766555444333322221000
Q ss_pred cccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCC
Q psy9001 1207 QHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNN 1286 (1351)
Q Consensus 1207 ~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~ 1286 (1351)
.........+. ..+... .... .. ...+............+..+||..+..
T Consensus 261 --------------~~~~~~~~~~~-----~~~~~~---~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (396)
T d1m7xa3 261 --------------HDTLDYMKLDP-----VYRQYH---HDKL-------TF-GILYNYTENFVLPLSHDEVVHGKKSIL 310 (396)
T ss_dssp --------------HHHHHHHHSCG-----GGGGGC---THHH-------HG-GGTTTTTSCEEEEECGGGSSTTSCCHH
T ss_pred --------------hhhhhhccchh-----hhhhhh---cccc-------ch-hhhhhhhhhccccccccccccCCCccc
Confidence 11111110000 000000 0000 00 000000111000113566778865431
Q ss_pred cc-cccccCCHHHHHHHHHHHHccCCccEEEee-cccCCCCccceeeccCCcce
Q psy9001 1287 EN-NMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1287 ~~-r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
.. ......+.+++++|++++||+||+||||+| |+...+... ..++++|..
T Consensus 311 ~~~~~~~~~~~~~~~la~a~llt~pG~P~IYyGdEiG~~~~~~--~~~~~~w~~ 362 (396)
T d1m7xa3 311 DRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWN--HDASLDWHL 362 (396)
T ss_dssp HHSCSSHHHHHHHHHHHHHHHHHSSSEEEEETTTTTTCSSCCC--TTSCCCGGG
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhCCccEeecccccCCCCCCC--CCCCCChhh
Confidence 00 000111235688999999999999999999 777665433 356788864
|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Probab=100.00 E-value=7.6e-37 Score=356.00 Aligned_cols=246 Identities=18% Similarity=0.219 Sum_probs=187.2
Q ss_pred CCCCCceEEEEecCCccCCC---------------------CCCCHHHHHHhhhHHHHHcCCCcCceeEEEeeccccccc
Q psy9001 174 KKPDNLKIYESHVGICTQEQ---------------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDW 232 (1351)
Q Consensus 174 ~~~~~~vIYE~hvr~ft~~~---------------------~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~ 232 (1351)
.++++.||||++|++|..++ ..|||+||+++ |||||+||||+ |||||||+
T Consensus 5 ~W~~~~v~Y~i~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~~gi~~k-Ldylk~LGv~~----i~l~Pi~~---- 75 (382)
T d1ea9c3 5 AWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDH-LDHLSKLGVNA----VYFTPLFK---- 75 (382)
T ss_dssp THHHHCCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHT-HHHHHHHTCSE----EEECCCSS----
T ss_pred ccccCCeEEEEEcchhcCCCCCCCccCcccccccCCCcCccCCcCHHHHHHh-hHHHHhCCCCE----EEeCCCcc----
Confidence 34688999999999996322 13999999999 99999999999 99999553
Q ss_pred CccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCcccccccccccc
Q psy9001 233 NMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHK 312 (1351)
Q Consensus 233 ~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~i 312 (1351)
. ..+|||++.+|+ +++
T Consensus 76 ----------------~---------~~~~gY~~~~~~---------------------~id------------------ 91 (382)
T d1ea9c3 76 ----------------A---------TTNHKYDTEDYF---------------------QID------------------ 91 (382)
T ss_dssp ----------------C---------SSSSTTSCSCTT---------------------CCC------------------
T ss_pred ----------------C---------CCCCCCCccccc---------------------ccc------------------
Confidence 1 124999999999 676
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCC---CCcCcccCCCC--------CCCCC----C
Q psy9001 313 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGT---QACFFHDGPRG--------THPLW----D 376 (1351)
Q Consensus 313 d~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~---~~~yy~~~~~~--------~~~~w----~ 376 (1351)
+++|+.+|||+||++||++||+||||+|+||++.++.+..... .+. ...||+..... .+..+ .
T Consensus 92 -~~~Gt~~df~~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (382)
T d1ea9c3 92 -PQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIPTYDTFAFEPL 170 (382)
T ss_dssp -TTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTHHHHHHHTTTTTCTTTTSSCBCSSSCCCTTSCCSBCBSSSCTT
T ss_pred -cccCCHHHHHHHHHHHHhhcceEEEeeecccccccCcchhhhhhcCCcccccccccccccccccccCcccccccccccc
Confidence 9999999999999999999999999999999998875432111 111 12233321110 00011 1
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhh
Q psy9001 377 SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDK 456 (1351)
Q Consensus 377 ~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~ 456 (1351)
.+++|+++|+|+++|++++++|+++|||||||+|++.+| +..+++.+...++..
T Consensus 171 ~~d~n~~~~~v~~~l~~~~~~w~~~~gvDGfR~Da~~~~--------------------------~~~~~~~~~~~~~~~ 224 (382)
T d1ea9c3 171 MPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEV--------------------------SHQFWREFRRVVKQA 224 (382)
T ss_dssp SBBCCTTSHHHHHHHHHHHHHHHHHHCCSEEEETTCTTS--------------------------CHHHHHHHHHHHHHH
T ss_pred cCccccccHHHHHHHHHHHhhcccceeeeEEEecchhhC--------------------------chhhhhhhhhhhhhc
Confidence 468999999999999999999999999999999999987 235677777777788
Q ss_pred CCCeEEEEEcC---------------------------------------------------------------------
Q psy9001 457 YPEIITIAEDV--------------------------------------------------------------------- 467 (1351)
Q Consensus 457 ~P~~~~iaE~~--------------------------------------------------------------------- 467 (1351)
+|+++++||.+
T Consensus 225 ~p~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nHD~~r~ 304 (382)
T d1ea9c3 225 NPDAYILGEVWHESSIWLEGDQFDAVMNYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEVMFNLLDSHDTARL 304 (382)
T ss_dssp CTTCEEEECCCSCCTTTTTTTSCSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHTTTTSCHHHHHTCEECSCCTTSCCH
T ss_pred CCCeeEEeeecccccccccCccccccccccchhhhHhhhhccccchhHHHHHHHHHHHhchhhcccceeeeeccCccccc
Confidence 88888888865
Q ss_pred ---------------------CCCCCcccccccCCCCCCCcCC-----cCCCCCCCcHHHHHHHHHHhhhcccccccC
Q psy9001 468 ---------------------SGMPASCRPVTEGGTGFDYRLE-----IRPDMSDMTVGTFDAAMNTTEERFKWLSAD 519 (1351)
Q Consensus 468 ---------------------~~~p~~~~~~~~gg~gfd~~~~-----~~~d~~~~sl~~f~k~L~~Lr~~~~~L~~g 519 (1351)
+|.|.|+++.|.|-.|-....+ |......+++.+|+|+|++||+++|+|+.|
T Consensus 305 ~~~~~~~~~~~~~a~~~~l~~pG~P~Iy~G~E~g~~~~~~~~~r~~~~w~~~~~~~~l~~~~~~L~~lR~~~paL~~G 382 (382)
T d1ea9c3 305 LTQADGDKRKMKLAVLFQFTYFGTPCIYYGDEVGLDGGHDPGCRKCMEWDETKHDKDLFAFYQTVIRLRQAHAALRTG 382 (382)
T ss_dssp HHHHCSCHHHHHHHHHHHTTSSSEECCCSSCSSCCCCCSHHHHTCCCCCCTTSCCHHHHHHHHHHHHHHHHCSHHHHC
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEccHhhCCCCCCCCCccCCCCCCCCcchHHHHHHHHHHHHHHhcCHHhcCC
Confidence 5788888887766333221111 433335677899999999999999999865
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=100.00 E-value=6.8e-37 Score=356.79 Aligned_cols=323 Identities=16% Similarity=0.158 Sum_probs=207.3
Q ss_pred CCceEEEeecCCcccCCCccccc--c-cccccc--cceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccC
Q psy9001 889 ENLKIYESHVGICTQEQKCASYE--D-FVRVVI--PRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNRE 963 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~~~gty~--~-f~~~~l--p~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~ 963 (1351)
.+++|||+|||.|+.....+... . ...... .....-|+|+++..++++|+++|++.++|+-
T Consensus 9 ~~~viY~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kLdyl~~lGi~~I~l~P-------------- 74 (382)
T d1wzla3 9 KEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTP-------------- 74 (382)
T ss_dssp GGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTHHHHHHHTCCEEEECC--------------
T ss_pred cCCEEEEEEcchhcCCCCCCCCccccccccccccccCCCCCcCHHHHHHhhHHHHHCCCCEEEECC--------------
Confidence 57899999999998532221100 0 000001 1122347888888888888888875555541
Q ss_pred ccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHH
Q psy9001 964 EFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDEC 1042 (1351)
Q Consensus 964 ~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~a 1042 (1351)
.+.++.++|| ++||++|+|+|||++|||+||++|
T Consensus 75 ---------------------------------------------v~~~~~~~gY~~~~~~~vd~~~Gt~~d~~~lv~~~ 109 (382)
T d1wzla3 75 ---------------------------------------------IFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEA 109 (382)
T ss_dssp ---------------------------------------------CEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHH
T ss_pred ---------------------------------------------cCCCCcccCCccccccccccCCCCHHHHHHHHHHH
Confidence 1122346888 899999999999999999999999
Q ss_pred HHcCCEEEEEeecccccCCccccCcC----CCCCCCccccCCC-------CCCCCCC-----CCCCCCCCCHHHHHHHHH
Q psy9001 1043 HKAGLYVLLDVVHSHASKNVLDGLNE----FDGTQACFFHDGP-------RGTHPLW-----DSRLFNYSEIEVLRFLLS 1106 (1351)
Q Consensus 1043 H~~GI~VILDVV~NHts~~~~~~l~~----~dg~~~~yf~~~~-------~g~~~~w-----~~~dlN~~np~Vr~~lid 1106 (1351)
|++||+||||+|+||++..+...... .......||.... ......+ +..+||++||+||++|++
T Consensus 110 H~~Gi~vilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLn~~n~~v~~~~~~ 189 (382)
T d1wzla3 110 HRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFD 189 (382)
T ss_dssp HTTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSCCSBCBSSSSCTTCBBBCTTSHHHHHHHHH
T ss_pred HhcccceEeeeeecccccccccccchhhcCccccccccccccccccccCCCCcccccccccccCCccCCCCHHHHHHHHH
Confidence 99999999999999999887321110 0011122332111 0111111 245899999999999999
Q ss_pred HHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCc
Q psy9001 1107 NLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPAS 1186 (1351)
Q Consensus 1107 ~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~ 1186 (1351)
+++||++ +||||||+|++.++ ...+++.+...+++.+|++++|||.+...+..
T Consensus 190 ~~~~w~~-~gvDGfR~D~~~~~--------------------------~~~~~~~~~~~~~~~~p~~~~i~e~~~~~~~~ 242 (382)
T d1wzla3 190 VARFWME-QGIDGWRLDVANEV--------------------------DHAFWREFRRLVKSLNPDALIVGEIWHDASGW 242 (382)
T ss_dssp HHHHHHH-TTCCEEEETTGGGS--------------------------CHHHHHHHHHHHHHHCTTCEEEECCSSCCGGG
T ss_pred HHHHHHH-cCCCceeecchhhc--------------------------chhhhhHHHHHHHhhCCceEEeeecccccchh
Confidence 9999997 69999999999988 35678899999999999999999988655433
Q ss_pred ccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCC
Q psy9001 1187 CRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPT 1266 (1351)
Q Consensus 1187 ~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~ 1266 (1351)
.. +.+++..++..+++ ..++..... ................ ......+.
T Consensus 243 ~~-----~~~~~~~~~~~~~~--------------~~~~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~~~ 291 (382)
T d1wzla3 243 LM-----GDQFDSVMNYLFRE--------------SVIRFFATG-----------EIHAERFDAELTRARM-LYPEQAAQ 291 (382)
T ss_dssp CS-----SSSCSEEBCHHHHH--------------HHHHHHTSC-----------CSCHHHHHHHHHHHHT-TSCHHHHT
T ss_pred hc-----ccccchhhhhhHHH--------------HHHHhhhcC-----------ccchhhHHHHHHhhhh-cccccccc
Confidence 22 33444333321111 111111000 0000000000000000 00000111
Q ss_pred CCccceeeecccCCCCCcCCccccccc--CCHHHHHHHHHHHHccCCccEEEee-cccCCCCccceeeccCCcce
Q psy9001 1267 RTGIIDEVNLLNNVREERNNENNMKRY--IQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1267 ~~~~~~~vnfv~nHD~~rn~~~r~~~~--~~~~~~r~A~allltspGiP~If~g-~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
.. ++|++|||+.|. ... ....++|+|++++||+||+||||+| |+...+.....++.||+|.-
T Consensus 292 ~~-----~~f~~nHD~~r~-----~~~~~~~~~~~~~a~~~llt~pG~P~iy~G~E~g~~g~~~~~~r~~~~W~~ 356 (382)
T d1wzla3 292 GL-----WNLLDSHDTERF-----LTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAGATDPDCLRPMIWEE 356 (382)
T ss_dssp TC-----EEESCCTTSCCH-----HHHTTTCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCG
T ss_pred cc-----eeeecCCCccch-----HhhcCCCHHHHHHHHHHHHHcCCCCEEEcCcccCCCCCCCccccCCCCCCc
Confidence 22 799999998753 221 2356889999999999999999999 77888888888899999963
|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Probab=100.00 E-value=5.8e-37 Score=356.99 Aligned_cols=323 Identities=15% Similarity=0.140 Sum_probs=209.8
Q ss_pred CCceEEEeecCCcccCCCccccc--cccccc--ccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCc
Q psy9001 889 ENLKIYESHVGICTQEQKCASYE--DFVRVV--IPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREE 964 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~~~gty~--~f~~~~--lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~ 964 (1351)
++++|||++|+.|+.....+.-. ...... .+....-|||+++..++++|+++|++.++|+
T Consensus 8 ~~~v~Y~i~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~~gi~~kLdylk~LGv~~i~l~---------------- 71 (382)
T d1ea9c3 8 KDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFT---------------- 71 (382)
T ss_dssp HHCCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTHHHHHHHTCSEEEEC----------------
T ss_pred cCCeEEEEEcchhcCCCCCCCccCcccccccCCCcCccCCcCHHHHHHhhHHHHhCCCCEEEeC----------------
Confidence 57899999999997542211100 000001 1112334888888888888888887555544
Q ss_pred cceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHH
Q psy9001 965 FAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECH 1043 (1351)
Q Consensus 965 ~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH 1043 (1351)
|.+.++++||| ++||++|+|+|||++|||+||++||
T Consensus 72 -------------------------------------------Pi~~~~~~~gY~~~~~~~id~~~Gt~~df~~lv~~~h 108 (382)
T d1ea9c3 72 -------------------------------------------PLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCH 108 (382)
T ss_dssp -------------------------------------------CCSSCSSSSTTSCSCTTCCCTTTCCHHHHHHHHHHHT
T ss_pred -------------------------------------------CCccCCCCCCCCcccccccccccCCHHHHHHHHHHHH
Confidence 11223456888 8999999999999999999999999
Q ss_pred HcCCEEEEEeecccccCCccccC---cC-CCCCCCccccCCCCCC--------CCCC----CCCCCCCCCHHHHHHHHHH
Q psy9001 1044 KAGLYVLLDVVHSHASKNVLDGL---NE-FDGTQACFFHDGPRGT--------HPLW----DSRLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1044 ~~GI~VILDVV~NHts~~~~~~l---~~-~dg~~~~yf~~~~~g~--------~~~w----~~~dlN~~np~Vr~~lid~ 1107 (1351)
++||+||||+|+||++.++.... .. -......||+...... ...+ +.+++|+++|+|+++|+++
T Consensus 109 ~~gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~n~~~~~v~~~l~~~ 188 (382)
T d1ea9c3 109 ERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKA 188 (382)
T ss_dssp TTTCEEEEECCCSBCCTTTHHHHHHHTTTTTCTTTTSSCBCSSSCCCTTSCCSBCBSSSCTTSBBCCTTSHHHHHHHHHH
T ss_pred hhcceEEEeeecccccccCcchhhhhhcCCcccccccccccccccccccCcccccccccccccCccccccHHHHHHHHHH
Confidence 99999999999999999873211 11 1112233444221110 0000 2458999999999999999
Q ss_pred HHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q psy9001 1108 LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASC 1187 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~ 1187 (1351)
+++|+++|||||||||++.++ +..+++.+.+.+++.+|+++++||.+.......
T Consensus 189 ~~~w~~~~gvDGfR~Da~~~~--------------------------~~~~~~~~~~~~~~~~p~~~~~~e~~~~~~~~~ 242 (382)
T d1ea9c3 189 AEYWIRETGIDGWRLDVANEV--------------------------SHQFWREFRRVVKQANPDAYILGEVWHESSIWL 242 (382)
T ss_dssp HHHHHHHHCCSEEEETTCTTS--------------------------CHHHHHHHHHHHHHHCTTCEEEECCCSCCTTTT
T ss_pred HhhcccceeeeEEEecchhhC--------------------------chhhhhhhhhhhhhcCCCeeEEeeecccccccc
Confidence 999999999999999999988 456778899999999999999999986654433
Q ss_pred cccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCC
Q psy9001 1188 RPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTR 1267 (1351)
Q Consensus 1188 ~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~ 1267 (1351)
.. .++...+...+. ...++.+....... .+.. ... .+. ... .+..
T Consensus 243 ~~-----~~~~~~~~~~~~--------------~~~~~~~~~~~~~~---~~~~-----~~~-----~~~--~~~-~~~~ 287 (382)
T d1ea9c3 243 EG-----DQFDAVMNYPFT--------------NAVLDFFIHQIADA---EKFS-----FML-----GKQ--LAG-YPRQ 287 (382)
T ss_dssp TT-----TSCSEEBCHHHH--------------HHHHHHTTSCCSCH---HHHH-----HHH-----HHT--TTT-SCHH
T ss_pred cC-----ccccccccccch--------------hhhHhhhhccccch---hHHH-----HHH-----HHH--HHh-chhh
Confidence 21 122211111110 11222221100000 0000 000 000 000 0000
Q ss_pred CccceeeecccCCCCCcCCccccccc--CCHHHHHHHHHHHHccCCccEEEee-cccCCCCccceeeccCCcc
Q psy9001 1268 TGIIDEVNLLNNVREERNNENNMKRY--IQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCSTREVVKAPLPFG 1337 (1351)
Q Consensus 1268 ~~~~~~vnfv~nHD~~rn~~~r~~~~--~~~~~~r~A~allltspGiP~If~g-~~~~~~~~~~~~~~p~~~~ 1337 (1351)
.....++|++|||+.|. ... ...++.|+|++++||+||+||||+| |+...+.....++.||+|.
T Consensus 288 -~~~~~~~~~~nHD~~r~-----~~~~~~~~~~~~~a~~~~l~~pG~P~Iy~G~E~g~~~~~~~~~r~~~~w~ 354 (382)
T d1ea9c3 288 -ASEVMFNLLDSHDTARL-----LTQADGDKRKMKLAVLFQFTYFGTPCIYYGDEVGLDGGHDPGCRKCMEWD 354 (382)
T ss_dssp -HHHTCEECSCCTTSCCH-----HHHHCSCHHHHHHHHHHHTTSSSEECCCSSCSSCCCCCSHHHHTCCCCCC
T ss_pred -cccceeeeeccCccccc-----ccccCCHHHHHHHHHHHHHHcCCCCEEEccHhhCCCCCCCCCccCCCCCC
Confidence 00111799999998753 221 2356789999999999999999999 7888888888999999996
|
| >d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclomaltodextrinase, central domain species: Flavobacterium sp. 92 [TaxId: 197856]
Probab=100.00 E-value=2.5e-36 Score=356.59 Aligned_cols=334 Identities=18% Similarity=0.155 Sum_probs=207.8
Q ss_pred CCceEEEeecCCccc-----CCCcccccccccccccceeccCCCcccccccccccccCCceEEEe-cCCCCCCCCccccc
Q psy9001 889 ENLKIYESHVGICTQ-----EQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELV-LPPNPDGDFNNWNR 962 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~-----~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~-ip~~~~g~~Y~~~~ 962 (1351)
..++||+++++-|.. ....+. ........+.-..-|||+++..++++|+++|++.++|+ |
T Consensus 10 ~~~viY~i~~~~F~~gd~~nd~~~~~-~~~~~~~~~~~~~gGd~~Gl~~kLdyl~~LGv~~I~l~Pi------------- 75 (422)
T d1h3ga3 10 PGDAIYQIMPDRFANGDPSNDNVAGM-REQADRRHGGGRHGGDIRGTIDHLDYIAGLGFTQLWPTPL------------- 75 (422)
T ss_dssp TTCCEEEECHHHHCCSCGGGSSCTTC-SSCCCTTSTTSCCCCCHHHHHHTHHHHHHHTCCEEEECCC-------------
T ss_pred CCCcEEEeChhhccCCCCCcCccCCc-cccccccccCCCCCcCHHHHHHhHHHHHHCCCCEEEeCCc-------------
Confidence 568899999987752 111111 00011111112234889999899999999887544444 2
Q ss_pred CccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHH
Q psy9001 963 EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDE 1041 (1351)
Q Consensus 963 ~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~ 1041 (1351)
+. . ...+.++||| +.||++|+|+|||++|||+||++
T Consensus 76 ----~~--------------------------------~-------~~~~~~~~GY~~~d~~~vd~~~Gt~~df~~lv~~ 112 (422)
T d1h3ga3 76 ----VE--------------------------------N-------DAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTE 112 (422)
T ss_dssp ----EE--------------------------------C-------CCSSCGGGCCSCSEEEEECTTTCCHHHHHHHHHH
T ss_pred ----cc--------------------------------C-------CCCCCCCCCCCccccCCcccccCCHHHHHHHHHH
Confidence 00 0 0011257899 99999999999999999999999
Q ss_pred HHHcCCEEEEEeecccccCCccccCcCCCCCCCc-cccCCC--------CCCC--------------CCCCCCCCCCCCH
Q psy9001 1042 CHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQAC-FFHDGP--------RGTH--------------PLWDSRLFNYSEI 1098 (1351)
Q Consensus 1042 aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~-yf~~~~--------~g~~--------------~~w~~~dlN~~np 1098 (1351)
||++||+||||||+||++.++. ++......... +..... .... ...+..+||++||
T Consensus 113 ~H~~Gi~VilD~V~NH~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~ 191 (422)
T d1h3ga3 113 ARKRGMGLIQDVVLSHIGKHHW-WMKDLPTPDWINYGGKFVPTQHHRVAVQDPYAAQADSENFTKGWFVEGMPDLNQTNP 191 (422)
T ss_dssp HHHTTCEEEEEECCSBCCTTSG-GGGSCSSTTSBSCCSSCCBCCCCGGGGSCTTCCHHHHHHHHHSBSSTTSCBBCTTSH
T ss_pred HHHhCccccccCccccccccch-hhccccccccccccccccccccccccccccccccCcccceeecccccCccccccccH
Confidence 9999999999999999999873 22221111100 000000 0000 0113458999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEc
Q psy9001 1099 EVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 1178 (1351)
Q Consensus 1099 ~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE 1178 (1351)
+||++|+++++||++++||||||||++.++ ...||+++.+.+++..|++++|||
T Consensus 192 ~vr~~~~~~~~~w~~~~gvDGfR~Da~~~~--------------------------~~~f~~~~~~~~~~~~~~~~~i~E 245 (422)
T d1h3ga3 192 LVANYLIQNNIWWIEYAGLSGLRIDTYGYS--------------------------DGAFLTEYTRRLMAEYPRLNMVGE 245 (422)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEETTGGGS--------------------------CHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred HHHHHHhhhHHHHhhheeeeeeeecccccc--------------------------cchhhhhhhhhhhhccccceEEee
Confidence 999999999999999999999999999877 457889999999999999999999
Q ss_pred cCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccccC
Q psy9001 1179 DVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRN 1258 (1351)
Q Consensus 1179 ~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~ 1258 (1351)
.|...+..+..+..+...++..... ++ ...+|... ..+..++..... ...... ..... .
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~d~~~~-----~~~~~~~~~~~~-~~~~~~-----~~~~~--------~ 304 (422)
T d1h3ga3 246 EWSTRVPVVARWQRGKANFDGYTSH-LP-SLMDFPLV-----DAMRNALSKTGE-ENGLNE-----VYETL--------S 304 (422)
T ss_dssp CCCSCHHHHHTTSTTCCCTTCCCCC-CC-EEBCHHHH-----HHHHHHHHCTTC-SSTTHH-----HHHHH--------H
T ss_pred ccccchhhhhhhccccccccccccc-hh-hhhhhhHH-----HHHHHHHhhccc-cchhHH-----HHHHH--------h
Confidence 9987777766666655433321111 11 01112111 223333311100 000000 00000 0
Q ss_pred cccccc-CCCCccceeeecccCCCCCcCCcccccccC--CHHHHHHHHHHHHccCCccEEEee-cccCCC----Ccccee
Q psy9001 1259 SIKLYL-PTRTGIIDEVNLLNNVREERNNENNMKRYI--QTESNMNGFGIQTLPTQSPLYLVA-KIEKPC----STREVV 1330 (1351)
Q Consensus 1259 s~~~y~-p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~--~~~~~r~A~allltspGiP~If~g-~~~~~~----~~~~~~ 1330 (1351)
....+. +.. .++|++|||+.|. .... ...+.|+|++++||+||+||||+| |+.... .....+
T Consensus 305 ~~~~~~~~~~-----~~~f~~nHD~~R~-----~~~~~~~~~~~~~a~~~llt~pG~P~iy~G~E~G~~~~~~~~~d~~~ 374 (422)
T d1h3ga3 305 LDYLYPEPQN-----LVLFGGNHDMARM-----FSAAGEDFDRWRMNLVFLMTMPRIPQFYSGDEILMTSTVKGRDDASY 374 (422)
T ss_dssp GGGGSSSGGG-----SEEESCCTTSCCH-----HHHTTSCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCCSSSCGGGG
T ss_pred hhcccccccc-----eeeeecccccccc-----cccccccHHHHHHHHHHHHHcCCCcEEEcChhhCCcCCCCCCCCcch
Confidence 000011 111 2799999998753 2222 346789999999999999999999 665432 233455
Q ss_pred eccCCcc
Q psy9001 1331 KAPLPFG 1337 (1351)
Q Consensus 1331 ~~p~~~~ 1337 (1351)
+.++||+
T Consensus 375 r~~~p~~ 381 (422)
T d1h3ga3 375 RRDFPGG 381 (422)
T ss_dssp SCCCTTS
T ss_pred hccCccc
Confidence 5555543
|
| >d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclomaltodextrinase, central domain species: Flavobacterium sp. 92 [TaxId: 197856]
Probab=100.00 E-value=8.4e-36 Score=352.09 Aligned_cols=201 Identities=16% Similarity=0.138 Sum_probs=151.8
Q ss_pred CCCCCCCCceEEEEecCCccCC---------------------CCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccc
Q psy9001 171 SKPKKPDNLKIYESHVGICTQE---------------------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKD 229 (1351)
Q Consensus 171 ~~p~~~~~~vIYE~hvr~ft~~---------------------~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~ 229 (1351)
+|+.+++..+|||++|+.|... ...|||+||+++ |||||+||||+ |||||||+
T Consensus 4 ~~~~~~~~~viY~i~~~~F~~gd~~nd~~~~~~~~~~~~~~~~~~gGd~~Gl~~k-Ldyl~~LGv~~----I~l~Pi~~- 77 (422)
T d1h3ga3 4 QRQGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDH-LDYIAGLGFTQ----LWPTPLVE- 77 (422)
T ss_dssp TCCCCCTTCCEEEECHHHHCCSCGGGSSCTTCSSCCCTTSTTSCCCCCHHHHHHT-HHHHHHHTCCE----EEECCCEE-
T ss_pred ccCCCCCCCcEEEeChhhccCCCCCcCccCCccccccccccCCCCCcCHHHHHHh-HHHHHHCCCCE----EEeCCccc-
Confidence 3445668899999999988421 123999999999 99999999999 99999553
Q ss_pred cccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccc
Q psy9001 230 EDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDE 309 (1351)
Q Consensus 230 ~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~ 309 (1351)
+ +.. ...+|||++.||+ +++
T Consensus 78 -------------------~--~~~---~~~~~GY~~~d~~---------------------~vd--------------- 97 (422)
T d1h3ga3 78 -------------------N--DAA---AYSYHGYAATDHY---------------------RID--------------- 97 (422)
T ss_dssp -------------------C--CCS---SCGGGCCSCSEEE---------------------EEC---------------
T ss_pred -------------------C--CCC---CCCCCCCCccccC---------------------Ccc---------------
Confidence 2 211 1246999999999 777
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccC--------CCCCC---------
Q psy9001 310 CHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG--------PRGTH--------- 372 (1351)
Q Consensus 310 ~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~--------~~~~~--------- 372 (1351)
|++|+.+|||+||++||++||+||||+|+||++.++.+....-......+.... .....
T Consensus 98 ----~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (422)
T d1h3ga3 98 ----PRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDPYAAQADSEN 173 (422)
T ss_dssp ----TTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSGGGGSCSSTTSBSCCSSCCBCCCCGGGGSCTTCCHHHHHH
T ss_pred ----cccCCHHHHHHHHHHHHHhCccccccCccccccccchhhccccccccccccccccccccccccccccccccCcccc
Confidence 999999999999999999999999999999999987553211000000000000 00000
Q ss_pred -----CCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHH
Q psy9001 373 -----PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLM 447 (1351)
Q Consensus 373 -----~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~ 447 (1351)
...+.++||+.+|+||++|++++++|++++||||||||++..+ ...||+
T Consensus 174 ~~~~~~~~~~~dln~~n~~vr~~~~~~~~~w~~~~gvDGfR~Da~~~~--------------------------~~~f~~ 227 (422)
T d1h3ga3 174 FTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYS--------------------------DGAFLT 227 (422)
T ss_dssp HHHSBSSTTSCBBCTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGS--------------------------CHHHHH
T ss_pred eeecccccCccccccccHHHHHHHhhhHHHHhhheeeeeeeecccccc--------------------------cchhhh
Confidence 1112468999999999999999999999999999999999876 245777
Q ss_pred HHHHHHHhhCCCeEEEEEcC
Q psy9001 448 VANKFLHDKYPEIITIAEDV 467 (1351)
Q Consensus 448 ~~~~~v~~~~P~~~~iaE~~ 467 (1351)
.+.+.+++..|++++|||.|
T Consensus 228 ~~~~~~~~~~~~~~~i~E~~ 247 (422)
T d1h3ga3 228 EYTRRLMAEYPRLNMVGEEW 247 (422)
T ss_dssp HHHHHHHHHCTTCEEEECCC
T ss_pred hhhhhhhhccccceEEeecc
Confidence 88888888888888888865
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Probab=100.00 E-value=1.8e-36 Score=357.40 Aligned_cols=331 Identities=15% Similarity=0.165 Sum_probs=208.9
Q ss_pred CCceEEEeecCCcccCC-----Ccccccccccccccceec-----cCCCcccccccccccccCCceEEEe-cCCCCCCCC
Q psy9001 889 ENLKIYESHVGICTQEQ-----KCASYEDFVRVVIPRIVK-----QGDFNNWNREEFAYKKLDFGKWELV-LPPNPDGDF 957 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~-----~~gty~~f~~~~lp~ik~-----lG~fn~~~~~~~~l~~lg~giwel~-ip~~~~g~~ 957 (1351)
.++|||++++.-|.... ..+.+..+ -|..+. =|||.++..++++|+++|++.++|+ |
T Consensus 7 ~~~v~Y~i~~drF~~gd~~~~~~~~~~~~~----~~~~~~~~~~~gGd~~gi~~kLdyl~~LGv~~I~L~Pi-------- 74 (407)
T d1qhoa4 7 KGDVIYQIIIDRFYDGDTTNNNPAKSYGLY----DPTKSKWKMYWGGDLEGVRQKLPYLKQLGVTTIWLSPV-------- 74 (407)
T ss_dssp TTCCEEEECGGGTCCSCGGGSSCGGGTTCB----CTTSCSTTSBCCCCHHHHHHTHHHHHHHTCCEEEECCC--------
T ss_pred cCCEEEEechhhhcCCCCCCCccccccccc----CCcccccCccCCcCHHHHHHHHHHHHHcCCCEEEeCcc--------
Confidence 68999999998886321 11111111 112222 2899999999999999998655554 2
Q ss_pred cccccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHH
Q psy9001 958 NNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLK 1036 (1351)
Q Consensus 958 Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK 1036 (1351)
+.. +.. .+...+..+||| +.||++|+|+|||++|||
T Consensus 75 ---------~~~----------~~~------------------------~~~~~~~~~~gY~~~d~~~id~~~Gt~~d~k 111 (407)
T d1qhoa4 75 ---------LDN----------LDT------------------------LAGTDNTGYHGYWTRDFKQIEEHFGNWTTFD 111 (407)
T ss_dssp ---------EEE----------CSS------------------------CSSTTCCCTTSCSEEEEEEECTTTCCHHHHH
T ss_pred ---------ccC----------Ccc------------------------cCCCCCCCCCceeeeecCCCCCCCCCHHHHH
Confidence 000 000 001112357899 999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEeecccccCCccccCcCCCCC----C----CccccCCC------CCCCCCCCC------------
Q psy9001 1037 YLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGT----Q----ACFFHDGP------RGTHPLWDS------------ 1090 (1351)
Q Consensus 1037 ~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~----~----~~yf~~~~------~g~~~~w~~------------ 1090 (1351)
+||++||++||+||||||+||++..+.......+.. . ..++.... .+...+|..
T Consensus 112 ~Lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (407)
T d1qhoa4 112 TLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDATKGYFHHNGDISNWDDRYEAQWKNFTDP 191 (407)
T ss_dssp HHHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEECSSSCTTTCCBCCSCBCSCTTCHHHHHHSBCEET
T ss_pred HHHHHhhhcccceeeccccccccCCccccccccccCcccccCccccccccccccccccccCCCCCcccccccccccccCC
Confidence 999999999999999999999997653221111110 0 01111111 122233321
Q ss_pred -----CCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHH
Q psy9001 1091 -----RLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKF 1165 (1351)
Q Consensus 1091 -----~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~ 1165 (1351)
.+||+.||+||++|+++++||++ +||||||+|++.++ ...||+++++.
T Consensus 192 ~~~~~~dln~~n~~v~~~~~~~~~~w~~-~gvDGfR~D~~~~~--------------------------~~~f~~~~~~~ 244 (407)
T d1qhoa4 192 AGFSLADLSQENGTIAQYLTDAAVQLVA-HGADGLRIDAVKHF--------------------------NSGFSKSLADK 244 (407)
T ss_dssp TTEEEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGS--------------------------CHHHHHHHHHH
T ss_pred ccccCchhhhhhhhHHHHHHHhHHHHhh-hccccccccccccc--------------------------chhHHHHHHHH
Confidence 27999999999999999999996 79999999999977 45678999999
Q ss_pred HHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcc
Q psy9001 1166 LHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTV 1245 (1351)
Q Consensus 1166 l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~ 1245 (1351)
+++. |+++++||.+.+.+.+........... ..... .+.++ .+..++..+.... .. .
T Consensus 245 i~~~-~~~~~~gE~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~-----~~~~~~~~~~~~~----------~~-~ 301 (407)
T d1qhoa4 245 LYQK-KDIFLVGEWYGDDPGTANHLEKVRYAN----NSGVN--VLDFD-----LNTVIRNVFGTFT----------QT-M 301 (407)
T ss_dssp HHHH-CCCEEEECCCCCCTTSTTHHHHHHHHH----HSSCE--EBCHH-----HHHHHHHHHTSCS----------SC-H
T ss_pred HHhc-cCcceeeeecCCChhhhHHHHhhcccc----ccccc--eehhh-----HHHHHHHHhhhcc----------hh-h
Confidence 9874 889999999988777765443211100 00000 00011 1122222221100 00 0
Q ss_pred cccccCCcccccCcccccc-CCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccCCccEEEee-cccCC
Q psy9001 1246 YETYPEPWNNRRNSIKLYL-PTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKP 1323 (1351)
Q Consensus 1246 ~~~~~~~~~~r~~s~~~y~-p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~ 1323 (1351)
.... . ...+. ...+. +... ++|++|||+.|. .......+++|+|++++||+||+||||+| |+...
T Consensus 302 ~~l~-~-~~~~~--~~~~~~~~~~-----~~f~~nHD~~R~----~~~~~~~~~~~~a~a~ll~~pGiP~iyyGdE~G~~ 368 (407)
T d1qhoa4 302 YDLN-N-MVNQT--GNEYKYKENL-----ITFIDNHDMSRF----LSVNSNKANLHQALAFILTSRGTPSIYYGTEQYMA 368 (407)
T ss_dssp HHHH-H-HHHHH--HHHCTTGGGC-----EECSCCTTSCCH----HHHCCCHHHHHHHHHHHHHSSSEEEEETTGGGTCC
T ss_pred hHHH-H-HHHHh--hhccccchhh-----ceecccCCcccc----ccccCCHHHHHHHHHHHHHcCCCcEEecCHhhCCC
Confidence 0000 0 00000 00001 1112 899999998753 22334567899999999999999999999 78888
Q ss_pred CCccceeeccCCcc
Q psy9001 1324 CSTREVVKAPLPFG 1337 (1351)
Q Consensus 1324 ~~~~~~~~~p~~~~ 1337 (1351)
+......+.||||.
T Consensus 369 g~~d~~~r~~~~~~ 382 (407)
T d1qhoa4 369 GGNDPYNRGMMPAF 382 (407)
T ss_dssp CCSTTTTCCCCCCC
T ss_pred CCCCccccccCCcc
Confidence 88888899999985
|
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=9.7e-37 Score=360.87 Aligned_cols=206 Identities=27% Similarity=0.424 Sum_probs=168.6
Q ss_pred CccCCCCC--CCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccc
Q psy9001 166 HKWTSSKP--KKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTN 243 (1351)
Q Consensus 166 ~~w~~~~p--~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~ 243 (1351)
|+|+++.+ ++++++||||+|||+|++. |||+||+++ |||||+||||+ ||||||++
T Consensus 2 ~~w~~~~~~~~~~~~~viYe~~~~~f~~~---Gd~~g~~~~-ldyl~~LGv~~----i~L~Pv~~--------------- 58 (420)
T d2bhua3 2 FDWTDADWHGIKLADCVFYEVHVGTFTPE---GTYRAAAEK-LPYLKELGVTA----IQVMPLAA--------------- 58 (420)
T ss_dssp SCCCCTTCCCCCGGGCCEEEECHHHHSSS---CSHHHHHHT-HHHHHHHTCCE----EEECCCEE---------------
T ss_pred cCCCCCCCCCCCccccEEEEEehhhcCCC---CCHHHHHHh-HHHHHHcCCCE----EEeCCCCc---------------
Confidence 78887655 3578999999999999864 999999998 99999999999 99999543
Q ss_pred cccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHH
Q psy9001 244 RRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLK 323 (1351)
Q Consensus 244 ~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk 323 (1351)
. + ...+|||+++||+ +++ |+||+++|||
T Consensus 59 -----~--~-----~~~~~GY~~~d~~---------------------~vd-------------------p~~G~~~d~~ 86 (420)
T d2bhua3 59 -----F--D-----GQRGWGYDGAAFY---------------------APY-------------------APYGRPEDLM 86 (420)
T ss_dssp -----C--S-----SSCCCSTTCCEEE---------------------EEC-------------------GGGCCHHHHH
T ss_pred -----C--C-----CCCCCCCCcccCC---------------------CcC-------------------cccCCHHHHH
Confidence 2 2 1245999999999 777 9999999999
Q ss_pred HHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcC
Q psy9001 324 YLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQ 403 (1351)
Q Consensus 324 ~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~ 403 (1351)
+||++||++||+||||+|+||++.++.+. ..+ .+.+|... ....| +++||+.||+|+++|+++++||++++|
T Consensus 87 ~lv~~aH~~gi~VilD~V~NH~~~~~~~~-~~~---~~~~~~~~---~~~~~-~~dlN~~np~v~~~~~~~~~~Wl~~~G 158 (420)
T d2bhua3 87 ALVDAAHRLGLGVFLDVVYNHFGPSGNYL-SSY---APSYFTDR---FSSAW-GMGLDYAEPHMRRYVTGNARMWLRDYH 158 (420)
T ss_dssp HHHHHHHHTTCEEEEEECCSCCCSSSCCH-HHH---CGGGEEEE---EECSS-SEEECTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccccccccccccccCCCCccc-ccc---cccccccc---ccccc-cccccccChHHHHHHHHHhheeeeccc
Confidence 99999999999999999999999986542 111 12222211 11223 578999999999999999999999999
Q ss_pred CCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCcccc
Q psy9001 404 FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRP 476 (1351)
Q Consensus 404 vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~ 476 (1351)
|||||||+|..|... ....+++++++.+++..|++++|||.|...|.+...
T Consensus 159 VDGfR~D~~~~l~~~----------------------~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~ 209 (420)
T d2bhua3 159 FDGLRLDATPYMTDD----------------------SETHILTELAQEIHELGGTHLLLAEDHRNLPDLVTV 209 (420)
T ss_dssp CSEEEETTGGGCCCC----------------------SSSCHHHHHHHHHHTTCSCCEEEEECSSCCTHHHHT
T ss_pred ccEEEEeeeeeeccc----------------------cccccHHHHHHHHHhhcCCceeeecccCCchhhhcc
Confidence 999999999988321 122478899999999999999999999988876653
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=100.00 E-value=5.8e-36 Score=348.85 Aligned_cols=244 Identities=16% Similarity=0.219 Sum_probs=186.6
Q ss_pred CCCCCCceEEEEecCCccCC----------------------CCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeeccccc
Q psy9001 173 PKKPDNLKIYESHVGICTQE----------------------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDE 230 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~ft~~----------------------~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~ 230 (1351)
|.+++++||||+|||.|+.. ...|||+|++++ |||||+||||+ |||||||+
T Consensus 5 P~w~~~~viY~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~k-Ldyl~~lGi~~----I~l~Pv~~-- 77 (382)
T d1wzla3 5 PEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDR-LPYLEELGVTA----LYFTPIFA-- 77 (382)
T ss_dssp CSGGGGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHT-HHHHHHHTCCE----EEECCCEE--
T ss_pred CccccCCEEEEEEcchhcCCCCCCCCccccccccccccccCCCCCcCHHHHHHh-hHHHHHCCCCE----EEECCcCC--
Confidence 45678899999999999632 124999999999 99999999999 99999543
Q ss_pred ccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCcccccccccc
Q psy9001 231 DWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDEC 310 (1351)
Q Consensus 231 ~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~ 310 (1351)
. + .+|||++.+|+ +++
T Consensus 78 ------------------~--~-------~~~gY~~~~~~---------------------~vd---------------- 93 (382)
T d1wzla3 78 ------------------S--P-------SHHKYDTADYL---------------------AID---------------- 93 (382)
T ss_dssp ------------------C--S-------SSSCCSCSEEE---------------------EEC----------------
T ss_pred ------------------C--C-------cccCCcccccc---------------------ccc----------------
Confidence 2 1 24999999999 777
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC----CCCCCcCcccCC-------CCCCCCC----
Q psy9001 311 HKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF----DGTQACFFHDGP-------RGTHPLW---- 375 (1351)
Q Consensus 311 ~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f----~g~~~~yy~~~~-------~~~~~~w---- 375 (1351)
|++|+++|||+||++||++||+||||+|+||++.++.+..... ......||.... ...+..+
T Consensus 94 ---~~~Gt~~d~~~lv~~~H~~Gi~vilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (382)
T d1wzla3 94 ---PQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQV 170 (382)
T ss_dssp ---TTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSCCSBCBSSSSC
T ss_pred ---cCCCCHHHHHHHHHHHHhcccceEeeeeecccccccccccchhhcCccccccccccccccccccCCCCccccccccc
Confidence 9999999999999999999999999999999998875432100 001112222111 1111111
Q ss_pred -CCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHH
Q psy9001 376 -DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLH 454 (1351)
Q Consensus 376 -~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~ 454 (1351)
..++||+.+|+|+++|+++++||++ +||||||+|++..+ ...+++.+...++
T Consensus 171 ~~~~dLn~~n~~v~~~~~~~~~~w~~-~gvDGfR~D~~~~~--------------------------~~~~~~~~~~~~~ 223 (382)
T d1wzla3 171 PAMPKLRTENPEVKEYLFDVARFWME-QGIDGWRLDVANEV--------------------------DHAFWREFRRLVK 223 (382)
T ss_dssp TTCBBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGS--------------------------CHHHHHHHHHHHH
T ss_pred ccCCccCCCCHHHHHHHHHHHHHHHH-cCCCceeecchhhc--------------------------chhhhhHHHHHHH
Confidence 1368999999999999999999997 89999999999987 2357888888888
Q ss_pred hhCCCeEEEEEcC-------------------------------------------------------------------
Q psy9001 455 DKYPEIITIAEDV------------------------------------------------------------------- 467 (1351)
Q Consensus 455 ~~~P~~~~iaE~~------------------------------------------------------------------- 467 (1351)
+.+|++++|||.+
T Consensus 224 ~~~p~~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~ 303 (382)
T d1wzla3 224 SLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTE 303 (382)
T ss_dssp HHCTTCEEEECCSSCCGGGCSSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHTTSCHHHHTTCEEESCCTTSC
T ss_pred hhCCceEEeeecccccchhhcccccchhhhhhHHHHHHHhhhcCccchhhHHHHHHhhhhcccccccccceeeecCCCcc
Confidence 8899999999886
Q ss_pred -----------------------CCCCCcccccccCCCCCCCcCC-----cCCCCCCCcHHHHHHHHHHhhhcccccc
Q psy9001 468 -----------------------SGMPASCRPVTEGGTGFDYRLE-----IRPDMSDMTVGTFDAAMNTTEERFKWLS 517 (1351)
Q Consensus 468 -----------------------~~~p~~~~~~~~gg~gfd~~~~-----~~~d~~~~sl~~f~k~L~~Lr~~~~~L~ 517 (1351)
+|.|.|+++.|.|-.|-.-..+ |......+.|.+|+|+||+||+++|+|+
T Consensus 304 r~~~~~~~~~~~~~~a~~~llt~pG~P~iy~G~E~g~~g~~~~~~r~~~~W~~~~~~~~l~~~~~~L~~lR~~~paL~ 381 (382)
T d1wzla3 304 RFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAGATDPDCLRPMIWEEKEQNRGLFEFYKELIRLRHRLASLT 381 (382)
T ss_dssp CHHHHTTTCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCGGGSCHHHHHHHHHHHHHHHHCHHHH
T ss_pred chHhhcCCCHHHHHHHHHHHHHcCCCCEEEcCcccCCCCCCCccccCCCCCCccccChHHHHHHHHHHHHHhhCHhhC
Confidence 5788888888776322221111 4333355678999999999999999996
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.7e-36 Score=352.76 Aligned_cols=257 Identities=19% Similarity=0.181 Sum_probs=156.8
Q ss_pred Ccccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCC-----------------CC
Q psy9001 1012 TPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG-----------------TQ 1073 (1351)
Q Consensus 1012 sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg-----------------~~ 1073 (1351)
++.+||| ++||++|+|+|||.+|||+||++||++||+||||+|+||++..+.......++ ..
T Consensus 48 ~~~~~GY~~~d~~~vd~~~Gt~~d~~~lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (391)
T d1lwha2 48 SISFHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDE 127 (391)
T ss_dssp CSSSSCCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECTTBCCTTSHHHHHHHTTCHHHHTTBCBCCTTCCTTC
T ss_pred CCCCCCCCccCCCCcCcccCCHHHHHHHHHHHHhcCCEEeecccccccccccccccccccCCccccccceecCCccccCc
Confidence 3457899 99999999999999999999999999999999999999999876321100000 00
Q ss_pred C------ccccCCCCCC-C-CCC--CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCc
Q psy9001 1074 A------CFFHDGPRGT-H-PLW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY 1143 (1351)
Q Consensus 1074 ~------~yf~~~~~g~-~-~~w--~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~ 1143 (1351)
. .++....++. . ..+ +..+||++||+||++|+++++||+ ++||||||||+|.+|..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~n~~v~~~i~~~~~~w~-e~gvDGfR~Daa~~~~~------------- 193 (391)
T d1lwha2 128 RREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQVFDEMKRLVLHLL-DMGVDGFRFDAAKHMRD------------- 193 (391)
T ss_dssp BCSSSCCBCEEECTTSCEEECTTCTTSCBBCTTSHHHHHHHHHHHHHHH-HHTCCEEEETTGGGSSS-------------
T ss_pred cccCCCCccccccCCCcccccccCCcCCccccccchhhHHHHHHHHHHh-hcCCCcceechHHHHHH-------------
Confidence 0 0011111111 1 111 346899999999999999999998 58999999999998821
Q ss_pred ccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchh
Q psy9001 1144 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKY 1223 (1351)
Q Consensus 1144 ~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~ 1223 (1351)
.......+|+.+.+. ...+.++|.|........ .+..|++.+.. . +...+
T Consensus 194 -------~~~~~~~~~~~~~~~-----~~~~~~~e~~~~~~~~~~----~~~~~~~~~~~---------~-----~~~~~ 243 (391)
T d1lwha2 194 -------TIEQNVRFWKYFLSD-----LKGIFLAEIWAEARMVDE----HGRIFGYMLNF---------D-----TSHCI 243 (391)
T ss_dssp -------SHHHHHHHHHHHHTT-----CCSEEEECCCSCSSSHHH----HHHHHEEEECH---------H-----HHHHH
T ss_pred -------hhhhhhHHHHHHHHH-----hhhhhhhhhhcccceeec----cccccCceecc---------c-----HHHHH
Confidence 112344555444332 245789998743322211 11122211111 1 01122
Q ss_pred HhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHH
Q psy9001 1224 KVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGF 1303 (1351)
Q Consensus 1224 rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~ 1303 (1351)
+.++.+. ....+ ..... + ...+. . ...++|++|||..+... .......++.++|+
T Consensus 244 ~~~~~~~-----~~~~~----~~~~~------~-----~~~~~-~--~~~~~f~~nhD~~~~~~--~~~~~~~~~~~~a~ 298 (391)
T d1lwha2 244 KEAVWKE-----NTRVL----IESIE------R-----AVIAK-D--YLPVNFTSNHDMSRLAS--FEGGFSKEKIKLSI 298 (391)
T ss_dssp HHHHHHT-----CTHHH----HHHHH------H-----HTSSC-S--SEEEEESCCTTSCCGGG--GGGCCCHHHHHHHH
T ss_pred HHHHhhc-----cHHHH----HHHHH------h-----hcccC-C--ccccccccccccccccc--ccccchhhHHHHHH
Confidence 2222110 00000 00000 0 00000 0 11289999999876421 12223567899999
Q ss_pred HHHHccCCccEEEee-cccCCCC----ccceeeccCCcc
Q psy9001 1304 GIQTLPTQSPLYLVA-KIEKPCS----TREVVKAPLPFG 1337 (1351)
Q Consensus 1304 allltspGiP~If~g-~~~~~~~----~~~~~~~p~~~~ 1337 (1351)
+++||+||+||||+| |+...+. .+..++.||||+
T Consensus 299 ~lllt~pG~P~IyyGdE~G~~~~~~~~~~~~~r~pm~W~ 337 (391)
T d1lwha2 299 SILFTLPGVPLVFYGDELGMKGVYQKPNTEVVLDPFPWN 337 (391)
T ss_dssp HHHTTSSSEEEEETTGGGTCCCCCCSSCGGGGSCCCCSS
T ss_pred HHhhcCCCCCEEecchhcCCcCCCCCCCcccccCCCCCC
Confidence 999999999999999 7765443 456789999995
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=100.00 E-value=7.3e-36 Score=358.00 Aligned_cols=193 Identities=19% Similarity=0.240 Sum_probs=143.0
Q ss_pred CCCC-CCCCceEEEEecCCccCC------CCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccc
Q psy9001 171 SKPK-KPDNLKIYESHVGICTQE------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTN 243 (1351)
Q Consensus 171 ~~p~-~~~~~vIYE~hvr~ft~~------~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~ 243 (1351)
.+|+ +.+++||||+|||+|++. +.+|||+||++| |||||+||||+ |||||||+....
T Consensus 8 ~~~~~~~~d~viYei~v~~f~~~~~~~~~~~~Gd~~Gi~~k-Ldyl~~LGvna----iwl~Pi~~~~~~----------- 71 (475)
T d1bf2a3 8 TKPTRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLK-ASYLASLGVTA----VEFLPVQETQND----------- 71 (475)
T ss_dssp CCCCCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHT-HHHHHHHTCCE----EEESCCBCBSCT-----------
T ss_pred CCCCCCCcceEEEEEEhhHhccCCCCCCccccCCHHHHHhh-hHHHHHcCCCE----EEeCCCCcCCCc-----------
Confidence 3553 579999999999999643 457999999999 99999999999 999997752100
Q ss_pred cccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHH
Q psy9001 244 RRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLK 323 (1351)
Q Consensus 244 ~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk 323 (1351)
.... .........+|||++.||+ +++++|++.. ..+|+++|||
T Consensus 72 -~~~~---~~~~~~~~~y~GY~~~d~~---------------------~vdp~y~~~~------------~~~Gt~~d~~ 114 (475)
T d1bf2a3 72 -ANDV---VPNSDANQNYWGYMTENYF---------------------SPDRRYAYNK------------AAGGPTAEFQ 114 (475)
T ss_dssp -TTTS---STTCCTTCCCSCCCBSCSS---------------------CBCGGGCSCC------------STTHHHHHHH
T ss_pred -cccc---ccccccCcCCCCCCcccCC---------------------CcCcccccCC------------CCCCCHHHHH
Confidence 0000 0111234578999999999 7776565432 4569999999
Q ss_pred HHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCC---------CcCcccCCCCCCC---C-CCCccCCCCCHHHHHH
Q psy9001 324 YLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ---------ACFFHDGPRGTHP---L-WDSRLFNYSEIEVLRF 390 (1351)
Q Consensus 324 ~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~---------~~yy~~~~~~~~~---~-w~~~~ln~~~p~v~~~ 390 (1351)
+||++||++||+||||+|+||++.++.+....-.-.. ..+|... .+... . +..++||+.||+|+++
T Consensus 115 ~LV~~aH~~GIrVilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dln~~np~V~~~ 193 (475)
T d1bf2a3 115 AMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYELT-SGNQYFYDNTGIGANFNTYNTVAQNL 193 (475)
T ss_dssp HHHHHHHHTTCEEEEEECCSSCTTCSBSSSSCSSCBBCSSHHHHHHHHHBCBC-TTSSSBCCSSSSSCCBCTTSHHHHHH
T ss_pred HHHHHHHhcCcEEEEEeccccccCCCcccccCCCcCccccccCcccccccccC-CCccccccCCCccCccchhhhHHHHH
Confidence 9999999999999999999999998765421110000 0011111 12211 1 2247899999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccccc
Q psy9001 391 LLSNLRWYLDEYQFDGFRFDGVTSMLY 417 (1351)
Q Consensus 391 l~~~l~~W~~e~~vDGfR~D~a~~~~~ 417 (1351)
+++++++|++++||||||+|++..|..
T Consensus 194 ~~~~~~~w~~~~gvDGfR~D~~~~~~~ 220 (475)
T d1bf2a3 194 IVDSLAYWANTMGVDGFRFDLASVLGN 220 (475)
T ss_dssp HHHHHHHHHHTSCCCEEEETTGGGGGB
T ss_pred HHHHHHhhhhhcCCceEEEehHhhhch
Confidence 999999999999999999999998853
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Probab=100.00 E-value=3.3e-35 Score=346.49 Aligned_cols=252 Identities=16% Similarity=0.162 Sum_probs=184.4
Q ss_pred CCCCCCceEEEEecCCccCCC-----------------------CCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccc
Q psy9001 173 PKKPDNLKIYESHVGICTQEQ-----------------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKD 229 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~ft~~~-----------------------~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~ 229 (1351)
|.+.++.||||++++.|...+ ..|||+||+++ |||||+||||+ |||||||+.
T Consensus 3 ~~~~~~~v~Y~i~~drF~~gd~~~~~~~~~~~~~~~~~~~~~~~~gGd~~gi~~k-Ldyl~~LGv~~----I~L~Pi~~~ 77 (407)
T d1qhoa4 3 SASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQK-LPYLKQLGVTT----IWLSPVLDN 77 (407)
T ss_dssp TSCCTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHT-HHHHHHHTCCE----EEECCCEEE
T ss_pred chhhcCCEEEEechhhhcCCCCCCCcccccccccCCcccccCccCCcCHHHHHHH-HHHHHHcCCCE----EEeCccccC
Confidence 446789999999999994211 12899999999 99999999999 999997642
Q ss_pred cccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccc
Q psy9001 230 EDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDE 309 (1351)
Q Consensus 230 ~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~ 309 (1351)
. . ...+.....+|||++.+|+ +++
T Consensus 78 ~----------------~----~~~~~~~~~~~gY~~~d~~---------------------~id--------------- 101 (407)
T d1qhoa4 78 L----------------D----TLAGTDNTGYHGYWTRDFK---------------------QIE--------------- 101 (407)
T ss_dssp C----------------S----SCSSTTCCCTTSCSEEEEE---------------------EEC---------------
T ss_pred C----------------c----ccCCCCCCCCCceeeeecC---------------------CCC---------------
Confidence 1 0 1112223467999999999 777
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCC--------CcCcccCC------CCCCCCC
Q psy9001 310 CHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ--------ACFFHDGP------RGTHPLW 375 (1351)
Q Consensus 310 ~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~--------~~yy~~~~------~~~~~~w 375 (1351)
|+||+++|||+||++||++||+||||+|+||++..+.+......+.. ..|+.... .+...+|
T Consensus 102 ----~~~Gt~~d~k~Lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (407)
T d1qhoa4 102 ----EHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDATKGYFHHNGDISNW 177 (407)
T ss_dssp ----TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEECSSSCTTTCCBCCSCBCSCT
T ss_pred ----CCCCCHHHHHHHHHHhhhcccceeeccccccccCCccccccccccCcccccCccccccccccccccccccCCCCCc
Confidence 99999999999999999999999999999999976544322211110 01111111 1122233
Q ss_pred C-----------------CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCcc
Q psy9001 376 D-----------------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV 438 (1351)
Q Consensus 376 ~-----------------~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~ 438 (1351)
. .++||+.+|+|+++|++++++|++ +||||||+|++..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~-~gvDGfR~D~~~~~----------------------- 233 (407)
T d1qhoa4 178 DDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVA-HGADGLRIDAVKHF----------------------- 233 (407)
T ss_dssp TCHHHHHHSBCEETTTEEEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGS-----------------------
T ss_pred ccccccccccccCCccccCchhhhhhhhHHHHHHHhHHHHhh-hccccccccccccc-----------------------
Confidence 2 147899999999999999999996 89999999999877
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEEcC---------------------------------------------------
Q psy9001 439 DTDALIYLMVANKFLHDKYPEIITIAEDV--------------------------------------------------- 467 (1351)
Q Consensus 439 ~~~~~~f~~~~~~~v~~~~P~~~~iaE~~--------------------------------------------------- 467 (1351)
..+||+++++.+++ .|+++++||.+
T Consensus 234 ---~~~f~~~~~~~i~~-~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 309 (407)
T d1qhoa4 234 ---NSGFSKSLADKLYQ-KKDIFLVGEWYGDDPGTANHLEKVRYANNSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNMVN 309 (407)
T ss_dssp ---CHHHHHHHHHHHHH-HCCCEEEECCCCCCTTSTTHHHHHHHHHHSSCEEBCHHHHHHHHHHHTSCSSCHHHHHHHHH
T ss_pred ---chhHHHHHHHHHHh-ccCcceeeeecCCChhhhHHHHhhccccccccceehhhHHHHHHHHhhhcchhhhHHHHHHH
Confidence 23567777777765 36777788765
Q ss_pred --------------------------------------------CCCCCcccccccCCCCCCCcCC---cCCCCCCCcHH
Q psy9001 468 --------------------------------------------SGMPASCRPVTEGGTGFDYRLE---IRPDMSDMTVG 500 (1351)
Q Consensus 468 --------------------------------------------~~~p~~~~~~~~gg~gfd~~~~---~~~d~~~~sl~ 500 (1351)
+|.|.|+++.|.|-.|.....+ +.+.....++.
T Consensus 310 ~~~~~~~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~a~a~ll~~pGiP~iyyGdE~G~~g~~d~~~r~~~~~~~~~~~~~ 389 (407)
T d1qhoa4 310 QTGNEYKYKENLITFIDNHDMSRFLSVNSNKANLHQALAFILTSRGTPSIYYGTEQYMAGGNDPYNRGMMPAFDTTTTAF 389 (407)
T ss_dssp HHHHHCTTGGGCEECSCCTTSCCHHHHCCCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCCCCCCTTSHHH
T ss_pred HhhhccccchhhceecccCCccccccccCCHHHHHHHHHHHHHcCCCcEEecCHhhCCCCCCCccccccCCcccCChHHH
Confidence 4777777777766433333222 22223456789
Q ss_pred HHHHHHHHhhhcccccc
Q psy9001 501 TFDAAMNTTEERFKWLS 517 (1351)
Q Consensus 501 ~f~k~L~~Lr~~~~~L~ 517 (1351)
+|+|+|++||+++|+|+
T Consensus 390 ~~~~~L~~lR~~~paLr 406 (407)
T d1qhoa4 390 KEVSTLAGLRRNNAAIQ 406 (407)
T ss_dssp HHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhhCHhhC
Confidence 99999999999999997
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Probab=100.00 E-value=4.5e-36 Score=351.08 Aligned_cols=269 Identities=18% Similarity=0.249 Sum_probs=169.2
Q ss_pred Ccccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc---CcCCCCCCCccccC-CCCCC--
Q psy9001 1012 TPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG---LNEFDGTQACFFHD-GPRGT-- 1084 (1351)
Q Consensus 1012 sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~---l~~~dg~~~~yf~~-~~~g~-- 1084 (1351)
++++||| +.||++|||+|||.+|||+||++||++||+||||||+||++.++... ...+......||.. ++...
T Consensus 60 ~~~~~GY~~~d~~~vd~~~G~~~dlk~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (409)
T d1wzaa2 60 SPSYHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTK 139 (409)
T ss_dssp CSSSSCCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCC
T ss_pred CCCCCCcCcccCCCcCcccCCHHHHHHHHHHHHhcCCEEEEecccccccccCcchhhhhccccccccccccccccccccC
Confidence 3457899 99999999999999999999999999999999999999999987321 11111111222221 11100
Q ss_pred -------------------CCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcc
Q psy9001 1085 -------------------HPLW-DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD 1144 (1351)
Q Consensus 1085 -------------------~~~w-~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~ 1144 (1351)
...| +..+||+.||+||++|++++++|++ +||||||||++.++...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~vr~~~~~~~~~wi~-~gVDGfR~D~~~~i~~~------------- 205 (409)
T d1wzaa2 140 ETKLDGGRVWHYSPTGMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLK-QGVDGFRLDGAMHIFPP------------- 205 (409)
T ss_dssp BCSSSCBCSEEEETTEEEECSSCTTSCBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEEECCCTTSCG-------------
T ss_pred ccccCCCccccccccccccccCCCCCcccccccHHHHHHHHHHHHHHHH-cCCCeecccchhhcccc-------------
Confidence 1122 3458999999999999999999997 59999999999988321
Q ss_pred cccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhH
Q psy9001 1145 EYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYK 1224 (1351)
Q Consensus 1145 ~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~r 1224 (1351)
........+|+++++.+++..| +++++|.+........ +. +.||+..+.. .+.
T Consensus 206 -----~~~~~~~~~~~~~~~~~~~~~~-~~~~~E~~~~~~~~~~-~~--~~~~~~~~~~------------------~~~ 258 (409)
T d1wzaa2 206 -----AQYDKNFTWWEKFRQEIEEVKP-VYLVGEVWDISETVAP-YF--KYGFDSTFNF------------------KLA 258 (409)
T ss_dssp -----GGTTHHHHHHHHHHHHHTTTSC-CEEEEECCSCHHHHGG-GG--TTTCSEEBCH------------------HHH
T ss_pred -----hhccchhHHHHHHHHhhccCCC-cEEEEEeecCccchhh-hh--hcccccchhh------------------hHH
Confidence 0123477899999999987665 8899998754433322 22 2334432222 111
Q ss_pred hhhccCCC--CCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccC-CHHHHHH
Q psy9001 1225 VVLDSDCS--HFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI-QTESNMN 1301 (1351)
Q Consensus 1225 d~l~~d~~--~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~-~~~~~r~ 1301 (1351)
..+..... ...++...... ..... .+. ..+.+.. .++|++|||+.|.. ..+. ..++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~---~~~~~~~-----~~~f~~nhD~~r~~----~~~~~~~~~~~~ 320 (409)
T d1wzaa2 259 EAVIATAKAGFPFGFNKKAKH-IYGVY-----DRE---VGFGNYI-----DAPFLTNHDQNRIL----DQLGQDRNKARV 320 (409)
T ss_dssp HHHHHHHHHTCSHHHHHHHHH-HHHHH-----HHH---TCTTSCC-----CBCBSCCTTSCCHH----HHTTTCHHHHHH
T ss_pred HHHHHHHhccCccchHHHHHH-HHHhh-----hhh---hcccccc-----ccccccccccCccc----cccCCchHHHHH
Confidence 11100000 00000000000 00000 000 0001111 16899999987531 1111 3578999
Q ss_pred HHHHHHccCCccEEEee-cccCCCC-ccceeeccCCccee
Q psy9001 1302 GFGIQTLPTQSPLYLVA-KIEKPCS-TREVVKAPLPFGVR 1339 (1351)
Q Consensus 1302 A~allltspGiP~If~g-~~~~~~~-~~~~~~~p~~~~~~ 1339 (1351)
|++++||+||+||||+| |+...+. ....+|.||+|+-.
T Consensus 321 ~~~~~lt~pG~P~iy~G~E~G~~~~~~~~~~R~p~~w~~~ 360 (409)
T d1wzaa2 321 AASIYLTLPGNPFIYYGEEIGMRGQGPHEVIREPFQWYNG 360 (409)
T ss_dssp HHHHHTTSSSCCEEETTGGGTCCCCSSHHHHTCCCCCSSS
T ss_pred HHHHHHhCCCCCEEecChhhCccCCCCCccccCCCCCCCC
Confidence 99999999999999999 5666654 44578999999844
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Probab=100.00 E-value=5.1e-36 Score=351.37 Aligned_cols=253 Identities=18% Similarity=0.140 Sum_probs=165.4
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccC---cCCCC-CCCccccCCCCCCCC--
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL---NEFDG-TQACFFHDGPRGTHP-- 1086 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l---~~~dg-~~~~yf~~~~~g~~~-- 1086 (1351)
.+||| +.||++|+|+|||++|||+||++||++||+||||+|+||++.++.... ..+.. ...++|+........
T Consensus 78 ~~~gY~~~d~~~vd~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (381)
T d2guya2 78 AYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYED 157 (381)
T ss_dssp CTTSCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCCSGGGBCCSCBCCCTTC
T ss_pred CCCCcccccccccccCCCCHHHHHHHHHHHHhhccceeeeccccccccccCcccccccccCCCCcccceecccccccccc
Confidence 46899 899999999999999999999999999999999999999998763211 11111 112333321111000
Q ss_pred ------------CCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChh
Q psy9001 1087 ------------LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD 1154 (1351)
Q Consensus 1087 ------------~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~ 1154 (1351)
..+..+||++||+||++|++++++|+.++||||||||++.++
T Consensus 158 ~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~~~giDGfR~D~~~~~-------------------------- 211 (381)
T d2guya2 158 QTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHV-------------------------- 211 (381)
T ss_dssp HHHHHHSBEECSSEEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGS--------------------------
T ss_pred ccccceeeccCCccccchhccccHHHHHHHHHHhhhccccccccceeeehHhhc--------------------------
Confidence 002347999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCC-cccccccccccccccccccccccccCchhHhhhccCCCC
Q psy9001 1155 ALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGG-TGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSH 1233 (1351)
Q Consensus 1155 ~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg-~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~ 1233 (1351)
...||+.+++. |++++|||.|.+.+.......... ..||+.+. ..+...+.+..
T Consensus 212 ~~~f~~~~~~~-----~~~~~igE~~~~~~~~~~~~~~~~~~~~d~~~~------------------~~~~~~~~~~~-- 266 (381)
T d2guya2 212 QKDFWPGYNKA-----AGVYCIGEVLDGDPAYTCPYQNVMDGVLNYPIY------------------YPLLNAFKSTS-- 266 (381)
T ss_dssp CGGGHHHHHHH-----HTSEEEECCCCSCHHHHGGGGGTSSEEBCHHHH------------------HHHHHHHSSTT--
T ss_pred CHHHHHhhhhc-----ceeeeeeecccccHhhhccccccccceecchhH------------------HHHHHHHhccC--
Confidence 22455666554 578999999977666554433211 11221111 12222221100
Q ss_pred CCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccCCcc
Q psy9001 1234 FGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPTQSP 1313 (1351)
Q Consensus 1234 ~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltspGiP 1313 (1351)
... .... ..........|... ..++|++|||+.|.. ......+++|+|++++||+||||
T Consensus 267 --------~~~-~~~~-----~~~~~~~~~~~~~~---~~~~f~enHD~~R~~----s~~~~~~~~~~a~~~l~t~pGiP 325 (381)
T d2guya2 267 --------GSM-DDLY-----NMINTVKSDCPDST---LLGTFVENHDNPRFA----SYTNDIALAKNVAAFIILNDGIP 325 (381)
T ss_dssp --------CCH-HHHH-----HHHHHHHHHSSCGG---GSEECSCCTTSCCGG----GTCCCHHHHHHHHHHHHHSSSEE
T ss_pred --------Cch-HHHH-----HHHHHHHhhcCccc---cceeeccCcCccccc----cccCCHHHHHHHHHHHHHcCCCc
Confidence 000 0000 00000000011111 117899999987641 12234678999999999999999
Q ss_pred EEEee-cccCCCCccceeeccCCcce
Q psy9001 1314 LYLVA-KIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1314 ~If~g-~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
|||+| |+...+.....++.|++|+-
T Consensus 326 ~iy~G~E~g~~g~~~~~~r~~~~~~~ 351 (381)
T d2guya2 326 IIYAGQEQHYAGGNDPANREATWLSG 351 (381)
T ss_dssp EEETTGGGTCCCCSTTTTCCCGGGGT
T ss_pred EEEcccccCcCCCCCcchhccccccc
Confidence 99999 88888888888888888763
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Probab=100.00 E-value=1.3e-35 Score=349.55 Aligned_cols=334 Identities=14% Similarity=0.094 Sum_probs=205.2
Q ss_pred CCceEEEeecCCcccCC-----CcccccccccccccceeccCCCcccccccc--cccccCCceEEEe-cCCCCCCCCccc
Q psy9001 889 ENLKIYESHVGICTQEQ-----KCASYEDFVRVVIPRIVKQGDFNNWNREEF--AYKKLDFGKWELV-LPPNPDGDFNNW 960 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~-----~~gty~~f~~~~lp~ik~lG~fn~~~~~~~--~l~~lg~giwel~-ip~~~~g~~Y~~ 960 (1351)
+++||||++|+-|.... ..+.+..- .-...-..-|||.++.++++ ||++||++.++|+ | .
T Consensus 13 ~~~viY~i~~drF~~g~~~~d~~~~~~~~~--~~~~~~~~gGdl~Gi~~kLd~~YLk~LGv~~I~L~Pi--~-------- 80 (406)
T d3bmva4 13 STDVIYQIVTDRFVDGNTSNNPTGDLYDPT--HTSLKKYFGGDWQGIINKINDGYLTGMGVTAIWIPQP--V-------- 80 (406)
T ss_dssp TTCCEEECCGGGTCCCCGGGSCCGGGBCTT--SCSTTSBCCCCHHHHHHHHHTSTTGGGTCCEEEECCC--E--------
T ss_pred ccCeEEEechhhccCCCCCCCCCCCccCCC--CCccCccCCcCHHHHHHhcCHHHHHHcCCCEEEECCc--c--------
Confidence 78899999999886321 11111100 00011123589999999998 9999998655554 2 0
Q ss_pred ccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHH
Q psy9001 961 NREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLV 1039 (1351)
Q Consensus 961 ~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV 1039 (1351)
+... + ..+ ..+...+.++||| ++||++|+|+|||++|||+||
T Consensus 81 ---~~~~-----~--------------------------~~~---~~~~~~~~~~~gY~~~d~~~vdp~~Gt~~dfk~LV 123 (406)
T d3bmva4 81 ---ENIY-----A--------------------------VLP---DSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLI 123 (406)
T ss_dssp ---EECC-----C--------------------------CEE---ETTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHH
T ss_pred ---cccc-----c--------------------------ccC---CCCCCCChhhcCcccccccccCcccccHHHHHHHH
Confidence 0000 0 000 0011122368999 999999999999999999999
Q ss_pred HHHHHcCCEEEEEeecccccCCccccCcCCCCCC----Cccc---cCCCCCCC-----CC------------CCCCCCCC
Q psy9001 1040 DECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ----ACFF---HDGPRGTH-----PL------------WDSRLFNY 1095 (1351)
Q Consensus 1040 ~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~----~~yf---~~~~~g~~-----~~------------w~~~dlN~ 1095 (1351)
++||++||+||||+|+|||+..+.......+... ..++ ........ .. ++..+||+
T Consensus 124 ~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~ 203 (406)
T d3bmva4 124 NTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFHHYGGTDFSSYEDGIYRNLFDLADLNQ 203 (406)
T ss_dssp HHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTCCBCCSCBCCCSSHHHHHHSBSTTEEEBCT
T ss_pred HHHHhccccceeeeecccccccccchhhhcccCccccCCccccccccccccccccccCcccccccccccccccccccccc
Confidence 9999999999999999999988742211111000 0000 00001100 01 12347999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEE
Q psy9001 1096 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1175 (1351)
Q Consensus 1096 ~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~il 1175 (1351)
++++||++|+++++||++ +||||||||++.++ +..+|+++++.+++..| .++
T Consensus 204 ~~~~v~~~l~~~~~~~~~-~giDGfR~D~~~~~--------------------------~~~~~~~~~~~~~~~~~-~~~ 255 (406)
T d3bmva4 204 QNSTIDSYLKSAIKVWLD-MGIDGIRLDAVKHM--------------------------PFGWQKNFMDSILSYRP-VFT 255 (406)
T ss_dssp TSHHHHHHHHHHHHHHHH-TTCCEEEESCGGGS--------------------------CHHHHHHHHHHHHHHSC-CEE
T ss_pred ccHHHHHHHHHHHHHHhh-cCCCcccccccccc--------------------------chhhHHHHHHHHHHhhh-ccc
Confidence 999999999999999996 79999999999987 45788999999999987 577
Q ss_pred EEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCccc
Q psy9001 1176 IAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNN 1255 (1351)
Q Consensus 1176 IaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~ 1255 (1351)
++|.+.+......... +.....+. ..++++. ...++..+..... . ..... .+..
T Consensus 256 ~~e~~~~~~~~~~~~~-------~~~~~~~~-~~~d~~~-----~~~~~~~~~~~~~----------~-~~~~~--~~~~ 309 (406)
T d3bmva4 256 FGEWFLGTNEIDVNNT-------YFANESGM-SLLDFRF-----SQKVRQVFRDNTD----------T-MYGLD--SMIQ 309 (406)
T ss_dssp EECCCCCTTCCCHHHH-------HHHHHSSS-EEBCHHH-----HHHHHHHHTSCSS----------C-HHHHH--HHHH
T ss_pred cccccccccccccccc-------cccCCCcc-ceecchh-----hHHHHHhhccCcc----------h-hHHHH--HHHh
Confidence 8898754432211000 00000000 0111111 1122222211000 0 00000 0000
Q ss_pred ccCcccccc-CCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccCCccEEEee-cccCCCCccceeecc
Q psy9001 1256 RRNSIKLYL-PTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCSTREVVKAP 1333 (1351)
Q Consensus 1256 r~~s~~~y~-p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~~~~~~~~~~p 1333 (1351)
+ ....+. +.. .++|++|||+.|. ......+++|+|++++||+||+||||+| |+...+.....++.|
T Consensus 310 ~--~~~~~~~~~~-----~~~fl~nHD~~R~-----~~~~~~~~~~~a~~~~lt~pG~P~IyyGdE~g~~g~~dp~~r~~ 377 (406)
T d3bmva4 310 S--TASDYNFIND-----MVTFIDNHDMDRF-----YNGGSTRPVEQALAFTLTSRGVPAIYYGTEQYMTGNGDPYNRAM 377 (406)
T ss_dssp H--HHHHCTTGGG-----CEECSCCSSSCCS-----CCSSCSHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCC
T ss_pred h--hcccccchhh-----hcccccCCchhhh-----ccCCCHHHHHHHHHHHHHhCCCCEEecChhhCcCCCCChhhhhc
Confidence 0 000011 111 2899999998754 3345567899999999999999999999 899999999999999
Q ss_pred CCcc
Q psy9001 1334 LPFG 1337 (1351)
Q Consensus 1334 ~~~~ 1337 (1351)
|+|.
T Consensus 378 ~~~~ 381 (406)
T d3bmva4 378 MTSF 381 (406)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9985
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.3e-35 Score=341.74 Aligned_cols=162 Identities=19% Similarity=0.287 Sum_probs=127.6
Q ss_pred ceEEEEecCCcc--CCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCC
Q psy9001 179 LKIYESHVGICT--QEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 256 (1351)
Q Consensus 179 ~vIYE~hvr~ft--~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s 256 (1351)
|||||+||++|+ ..++.|||+||++| |||||+||||+ |||||||+ .
T Consensus 1 ~v~Yei~~~~F~d~~~dg~Gd~~gi~~k-Ldyl~~LGv~~----I~l~Pi~~--------------------~------- 48 (391)
T d1lwha2 1 MIGYQIYVRSFRDGNLDGVGDFRGLKNA-VSYLKELGIDF----VWLMPVFS--------------------S------- 48 (391)
T ss_dssp CCEEEECGGGTCCSSSSSSCCHHHHHHT-HHHHHHTTCSE----EEECCCEE--------------------C-------
T ss_pred CEEEEEccccccCCCCCCccCHHHHHHh-hHHHHHcCCCE----EEECCCCC--------------------C-------
Confidence 699999999996 44668999999999 99999999999 99999553 1
Q ss_pred CCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEE
Q psy9001 257 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 336 (1351)
Q Consensus 257 ~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~V 336 (1351)
..+|||+++||+ +++ |+||+.+|||+||++||++||+|
T Consensus 49 --~~~~GY~~~d~~---------------------~vd-------------------~~~Gt~~d~~~lv~~~h~~gi~V 86 (391)
T d1lwha2 49 --ISFHGYDVVDFY---------------------SFK-------------------AEYGSEREFKEMIEAFHDSGIKV 86 (391)
T ss_dssp --SSSSCCSCSEEE---------------------EEC-------------------GGGCCHHHHHHHHHHHHHTTCEE
T ss_pred --CCCCCCCccCCC---------------------CcC-------------------cccCCHHHHHHHHHHHHhcCCEE
Confidence 135999999999 777 89999999999999999999999
Q ss_pred EEEeeccccccCCcCCcccCCCC-----------------C------CcCcccCCCCC-CCCC---CCccCCCCCHHHHH
Q psy9001 337 LLDVVHSHASKNVLDGLNEFDGT-----------------Q------ACFFHDGPRGT-HPLW---DSRLFNYSEIEVLR 389 (1351)
Q Consensus 337 ILDvV~NH~~~~~~~~~~~f~g~-----------------~------~~yy~~~~~~~-~~~w---~~~~ln~~~p~v~~ 389 (1351)
|||+|+||++..+.+......+. . ..++.....+. +..| ..++||+.+|+||+
T Consensus 87 ilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~n~~v~~ 166 (391)
T d1lwha2 87 VLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQVFD 166 (391)
T ss_dssp EEEECTTBCCTTSHHHHHHHTTCHHHHTTBCBCCTTCCTTCBCSSSCCBCEEECTTSCEEECTTCTTSCBBCTTSHHHHH
T ss_pred eecccccccccccccccccccCCccccccceecCCccccCccccCCCCccccccCCCcccccccCCcCCccccccchhhH
Confidence 99999999998764321111100 0 00111111111 1111 24689999999999
Q ss_pred HHHHHHHHHHHHcCCCcccccccccc
Q psy9001 390 FLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 390 ~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
+|+++++||++ +||||||+|+|.+|
T Consensus 167 ~i~~~~~~w~e-~gvDGfR~Daa~~~ 191 (391)
T d1lwha2 167 EMKRLVLHLLD-MGVDGFRFDAAKHM 191 (391)
T ss_dssp HHHHHHHHHHH-HTCCEEEETTGGGS
T ss_pred HHHHHHHHHhh-cCCCcceechHHHH
Confidence 99999999995 99999999999987
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Probab=100.00 E-value=1.5e-34 Score=338.00 Aligned_cols=197 Identities=18% Similarity=0.290 Sum_probs=151.8
Q ss_pred CCceEEEEecCCccCC--CCCCCHHHHHHhhhHHH--------HHcCCCcCceeEEEeecccccccCccceEEEcccccc
Q psy9001 177 DNLKIYESHVGICTQE--QKCASYEDFVRVVIPRI--------VKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRY 246 (1351)
Q Consensus 177 ~~~vIYE~hvr~ft~~--~~~G~~~gi~~~~L~yL--------k~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~ 246 (1351)
+++||||+|||+|+.. ...|||+|+++| |||| |+||||+ |||||||+
T Consensus 3 k~~v~Y~~~~~~f~d~~~~~~Gd~~g~~~k-Ldyl~~~~~~~i~~LGv~~----i~l~Pi~~------------------ 59 (409)
T d1wzaa2 3 KHGTYYEIFVRSFYDSDGDGIGDLKGIIEK-LDYLNDGDPETIADLGVNG----IWLMPIFK------------------ 59 (409)
T ss_dssp CCCCEEEECGGGSCCSSSSSCCCHHHHHHT-HHHHCCSCTTCCSSCCCSE----EEECCCEE------------------
T ss_pred CccEEEEEecchhcCCCCCCCcCHHHHHHh-ccccccccccHHhhcCccE----EEECCCCC------------------
Confidence 5789999999999754 557999999999 9998 7999999 99999553
Q ss_pred ccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHH
Q psy9001 247 MEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 326 (1351)
Q Consensus 247 ~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV 326 (1351)
. ..+|||++.+|+ +++ |+||+.+|||+||
T Consensus 60 --~---------~~~~GY~~~d~~---------------------~vd-------------------~~~G~~~dlk~lv 88 (409)
T d1wzaa2 60 --S---------PSYHGYDVTDYY---------------------KIN-------------------PDYGTLEDFHKLV 88 (409)
T ss_dssp --C---------SSSSCCSCSEEE---------------------EEC-------------------GGGCCHHHHHHHH
T ss_pred --C---------CCCCCcCcccCC---------------------CcC-------------------cccCCHHHHHHHH
Confidence 2 134999999999 777 8999999999999
Q ss_pred HHHHHcCCEEEEEeeccccccCCcCCc---ccCCCCCCcCcccC-CCCC---------------------CCCCC-CccC
Q psy9001 327 DECHKAGLYVLLDVVHSHASKNVLDGL---NEFDGTQACFFHDG-PRGT---------------------HPLWD-SRLF 380 (1351)
Q Consensus 327 ~~~H~~GI~VILDvV~NH~~~~~~~~~---~~f~g~~~~yy~~~-~~~~---------------------~~~w~-~~~l 380 (1351)
++||++||+||||||+||++.++.+.. ..+......||... +... ...|. .++|
T Consensus 89 ~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 168 (409)
T d1wzaa2 89 EAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGYFWSGMPDL 168 (409)
T ss_dssp HHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCCBCSSSCBCSEEEETTEEEECSSCTTSCBB
T ss_pred HHHHhcCCEEEEecccccccccCcchhhhhccccccccccccccccccccCccccCCCccccccccccccccCCCCCccc
Confidence 999999999999999999998874332 11111111222111 0000 11222 3689
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCe
Q psy9001 381 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEI 460 (1351)
Q Consensus 381 n~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~ 460 (1351)
|+.+|+||++|++++++|++ +||||||+|++..+... ........||+++++.+++..| +
T Consensus 169 n~~n~~vr~~~~~~~~~wi~-~gVDGfR~D~~~~i~~~------------------~~~~~~~~~~~~~~~~~~~~~~-~ 228 (409)
T d1wzaa2 169 NYNNPEVQEKVIGIAKYWLK-QGVDGFRLDGAMHIFPP------------------AQYDKNFTWWEKFRQEIEEVKP-V 228 (409)
T ss_dssp CTTSHHHHHHHHHHHHHHHH-TTCCEEEEECCCTTSCG------------------GGTTHHHHHHHHHHHHHTTTSC-C
T ss_pred ccccHHHHHHHHHHHHHHHH-cCCCeecccchhhcccc------------------hhccchhHHHHHHHHhhccCCC-c
Confidence 99999999999999999997 69999999999987321 1122466899999999987765 7
Q ss_pred EEEEEcC
Q psy9001 461 ITIAEDV 467 (1351)
Q Consensus 461 ~~iaE~~ 467 (1351)
++++|.+
T Consensus 229 ~~~~E~~ 235 (409)
T d1wzaa2 229 YLVGEVW 235 (409)
T ss_dssp EEEEECC
T ss_pred EEEEEee
Confidence 8889986
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=4e-35 Score=351.62 Aligned_cols=168 Identities=20% Similarity=0.210 Sum_probs=113.0
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc---CcCCCCCCCc--cccCCCCCC-CC
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG---LNEFDGTQAC--FFHDGPRGT-HP 1086 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~---l~~~dg~~~~--yf~~~~~g~-~~ 1086 (1351)
++||| ++||++|+|+|||++|||+||++||++||+||||||+||++.++... ....+..... ++..+..+. ..
T Consensus 59 ~~~GY~~~d~~~vd~~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (479)
T d1uoka2 59 DDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPN 138 (479)
T ss_dssp TTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSSCSS
T ss_pred CCCCcCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEecccccccccccchhhhhhhccCCccccceeccccccCcCcC
Confidence 36899 99999999999999999999999999999999999999999987321 1111111111 111111110 00
Q ss_pred -------------------------CCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCC
Q psy9001 1087 -------------------------LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSG 1141 (1351)
Q Consensus 1087 -------------------------~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~ 1141 (1351)
..+..+||+++|+||++|+++++||++ +||||||+|++.+|...... ......
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~i~~~~~~W~e-~gvDGfR~D~~~~i~~~~~~-~~~~~~ 216 (479)
T d1uoka2 139 NWGAAFSGSAWQYDEMTDEYYLHLFSKKQPDLNWDNEKVRQDVYEMMKFWLE-KGIDGFRMDVINFISKEEGL-PTVETE 216 (479)
T ss_dssp CBBCTTSSBSEEEETTTTEEEECSSCTTSCBBCTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCCCTTC-CCCCCC
T ss_pred CccccCCCCccccccccCcceecccCCCccccccCCHHHHHHHHHHHHHHHH-cCCCCcccccceeeeccccC-cccccc
Confidence 013458999999999999999999975 89999999999988543211 111110
Q ss_pred CcccccCC---cCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCC
Q psy9001 1142 HYDEYFGL---NVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMP 1184 (1351)
Q Consensus 1142 ~~~~~~g~---~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p 1184 (1351)
......+. ....+...+++++++.+.. .++..+++|.+...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~ 261 (479)
T d1uoka2 217 EEGYVSGHKHFMNGPNIHKYLHEMNEEVLS-HYDIMTVGEMPGVTT 261 (479)
T ss_dssp CSSCBCCGGGTTTCTTHHHHHHHHHHHTGG-GSCCEEEEECTTCCH
T ss_pred cccccccchhhccChhHHHHHHHHHHHHHh-cCccceeecccCCch
Confidence 11111111 1223466777888877765 567888999765443
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Probab=100.00 E-value=2.9e-35 Score=352.76 Aligned_cols=166 Identities=19% Similarity=0.222 Sum_probs=109.5
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCc---CCCCCCCccc-c-CCC------
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN---EFDGTQACFF-H-DGP------ 1081 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~---~~dg~~~~yf-~-~~~------ 1081 (1351)
++||| ++||++|||+|||++|||+||++||++||+||||+|+||++.+|..... ........+| . ...
T Consensus 59 ~~~GY~~~d~~~vd~~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~ 138 (478)
T d1m53a2 59 TDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPN 138 (478)
T ss_dssp TTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSSCSS
T ss_pred CCCCcCccCCCCcCcccCCHHHHHHHHHHHHHCCCEEEeccccccccccCchhhhcccCCCCCccccccccCCCcCCCCc
Confidence 46899 9999999999999999999999999999999999999999987622110 0000001111 0 000
Q ss_pred ----------------CC-CCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCC--
Q psy9001 1082 ----------------RG-THP---LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGF-- 1139 (1351)
Q Consensus 1082 ----------------~g-~~~---~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~-- 1139 (1351)
.+ ... ..+..++|+++|+|+++|+++++||+ ++||||||||+|.+|.....-.....
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~V~~~i~~~~~~w~-e~gvDGfR~D~~~~~~~~~~~~~~~~~~ 217 (478)
T d1m53a2 139 NYPSFFGGSAWQKDAKSGQYYLHYFARQQPDLNWDNPKVREDLYAMLRFWL-DKGVSGMRFDTVATYSKIPGFPNLTPEQ 217 (478)
T ss_dssp CCBCTTSSBSEEECTTTCCEEECSSCTTCCBBCTTSHHHHHHHHHHHHHHH-TTTCCEEEETTGGGSSCCTTCCCCCHHH
T ss_pred cccccCCCCccccccccCcccccCcCCCCCcccchhHHHHHHHHHHHHHHH-hcCCceeccccceeecccccccccchhh
Confidence 00 000 11345899999999999999999999 58999999999998843211000000
Q ss_pred CCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCC
Q psy9001 1140 SGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 1183 (1351)
Q Consensus 1140 ~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~ 1183 (1351)
.....+.+ ........+++++++.+.. .++..++||.+...
T Consensus 218 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~ 258 (478)
T d1m53a2 218 QKNFAEQY--TMGPNIHRYIQEMNRKVLS-RYDVATAGEIFGVP 258 (478)
T ss_dssp HHTHHHHT--TCCTTHHHHHHHHHHHTGG-GSCCEEEEECTTCC
T ss_pred hhccchhh--ccchhHHHHHHHHHHHHhh-ccccceeeeecCCC
Confidence 00000000 0123345677888877765 46889999987544
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=100.00 E-value=1.8e-35 Score=354.64 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=92.2
Q ss_pred cccccc-ccccccccCCC-------CCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccc-------
Q psy9001 1013 PEQLKY-LVDECHKAGLF-------GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFF------- 1077 (1351)
Q Consensus 1013 p~~hgY-~~Dy~~idp~y-------Gt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf------- 1077 (1351)
..+||| ++||++|||+| ||++|||+||++||++||+||||+|+||++..|.. ..... ....++
T Consensus 83 ~~y~GY~~~d~~~vdp~y~~~~~~~Gt~~d~~~LV~~aH~~GIrVilD~V~NH~~~~~~~-~~~~~-~~~~~~~~~~~~~ 160 (475)
T d1bf2a3 83 QNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTW-TSSDP-TTATIYSWRGLDN 160 (475)
T ss_dssp CCCSCCCBSCSSCBCGGGCSCCSTTHHHHHHHHHHHHHHHTTCEEEEEECCSSCTTCSBS-SSSCS-SCBBCSSHHHHHH
T ss_pred cCCCCCCcccCCCcCcccccCCCCCCCHHHHHHHHHHHHhcCcEEEEEeccccccCCCcc-cccCC-CcCccccccCccc
Confidence 357999 99999999999 99999999999999999999999999999998732 22111 111111
Q ss_pred ---cCCCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccC
Q psy9001 1078 ---HDGPRGTHP----LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHN 1132 (1351)
Q Consensus 1078 ---~~~~~g~~~----~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~ 1132 (1351)
.....+... .+...+||+.||+|+++++++++||++++||||||+|++.+|.+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~~~~~~~~w~~~~gvDGfR~D~~~~~~~~~ 222 (475)
T d1bf2a3 161 ATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGNSC 222 (475)
T ss_dssp HHHBCBCTTSSSBCCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTSCCCEEEETTGGGGGBCC
T ss_pred ccccccCCCccccccCCCccCccchhhhHHHHHHHHHHHhhhhhcCCceEEEehHhhhchhh
Confidence 111112111 1235689999999999999999999999999999999999997543
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Probab=100.00 E-value=6.2e-35 Score=342.09 Aligned_cols=174 Identities=17% Similarity=0.189 Sum_probs=132.1
Q ss_pred CCCCceEEEEecCCccCCCC--------------CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEE
Q psy9001 175 KPDNLKIYESHVGICTQEQK--------------CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHT 240 (1351)
Q Consensus 175 ~~~~~vIYE~hvr~ft~~~~--------------~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~ 240 (1351)
.|++.+|||++|++|+..+. .|||+||+++ |||||+||||+ |||||||+..
T Consensus 5 ~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gGd~~gi~~~-Ldyl~~LGv~~----I~L~Pi~~~~---------- 69 (381)
T d2guya2 5 DWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDK-LDYIQGMGFTA----IWITPVTAQL---------- 69 (381)
T ss_dssp HHTTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHT-HHHHHTTTCCE----EEECCCEEEC----------
T ss_pred cccCCeEEEEEcchhcCCCCCCCCCCCCccCccCCcCHHHHHHh-HHHHHHCCCCE----EEeCCCCCCC----------
Confidence 34667899999999964322 1899999999 99999999999 9999966421
Q ss_pred ccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHH
Q psy9001 241 LTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPE 320 (1351)
Q Consensus 241 ~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~ 320 (1351)
+........+|||++.+|+ +++ |++|+++
T Consensus 70 -----------~~~~~~~~~~~gY~~~d~~---------------------~vd-------------------~~~Gt~~ 98 (381)
T d2guya2 70 -----------PQTTAYGDAYHGYWQQDIY---------------------SLN-------------------ENYGTAD 98 (381)
T ss_dssp -----------CCCBTTBCCTTSCSEEEEE---------------------EEC-------------------TTSCCHH
T ss_pred -----------cccCCCCCCCCCccccccc---------------------ccc-------------------cCCCCHH
Confidence 0001112346999999999 777 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCc---ccCCCCC-CcCcccCCCCCCCCC----------------CCccC
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL---NEFDGTQ-ACFFHDGPRGTHPLW----------------DSRLF 380 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~---~~f~g~~-~~yy~~~~~~~~~~w----------------~~~~l 380 (1351)
|||+||++||++||+||||+|+||++.++.+.. ..+.... ..+|+... ....| +.++|
T Consensus 99 dfk~lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~dl 176 (381)
T d2guya2 99 DLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFC--FIQNYEDQTQVEDCWLGDNTVSLPDL 176 (381)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCCSGGGBCCSC--BCCCTTCHHHHHHSBEECSSEEECBB
T ss_pred HHHHHHHHHHhhccceeeeccccccccccCcccccccccCCCCcccceeccc--cccccccccccceeeccCCccccchh
Confidence 999999999999999999999999997764432 1122211 12232211 11111 12579
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccccccccccc
Q psy9001 381 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 416 (1351)
Q Consensus 381 n~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~ 416 (1351)
|+.+|+||+++++++++|+.++||||||+|+|..+.
T Consensus 177 n~~n~~v~~~~~~~~~~w~~~~giDGfR~D~~~~~~ 212 (381)
T d2guya2 177 DTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQ 212 (381)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSC
T ss_pred ccccHHHHHHHHHHhhhccccccccceeeehHhhcC
Confidence 999999999999999999999999999999999883
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=2.4e-34 Score=344.78 Aligned_cols=169 Identities=15% Similarity=0.234 Sum_probs=131.9
Q ss_pred CCCCCceEEEEecCCccC--CCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccc
Q psy9001 174 KKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTV 251 (1351)
Q Consensus 174 ~~~~~~vIYE~hvr~ft~--~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~ 251 (1351)
.+++++||||+||+.|+. ....|||+||+++ |||||+||||+ |||||||+ .
T Consensus 4 ~W~~~~viYei~~~~F~d~~~~~~Gd~~gi~~k-LdYLk~LGv~~----I~l~Pi~~--------------------~-- 56 (479)
T d1uoka2 4 QWWKESVVYQIYPRSFMDSNGDGIGDLRGIISK-LDYLKELGIDV----IWLSPVYE--------------------S-- 56 (479)
T ss_dssp CHHHHCCEEEECGGGTCCSSSSSSCCHHHHHTT-HHHHHHHTCCE----EEECCCEE--------------------C--
T ss_pred hhhccCeEEEEEcchhcCCCCCCCcCHHHHHHh-hHHHHHcCCCE----EEECCCcC--------------------C--
Confidence 346889999999999964 4567999999999 99999999999 99999553 2
Q ss_pred cccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHH
Q psy9001 252 AYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 331 (1351)
Q Consensus 252 ~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~ 331 (1351)
+ ..+|||+++||+ +++ |+||+++|||+||++||+
T Consensus 57 ~------~~~~GY~~~d~~---------------------~vd-------------------~~~Gt~~df~~Lv~~aH~ 90 (479)
T d1uoka2 57 P------NDDNGYDISDYC---------------------KIM-------------------NEFGTMEDWDELLHEMHE 90 (479)
T ss_dssp C------CTTTTSSCSEEE---------------------EEC-------------------GGGCCHHHHHHHHHHHHH
T ss_pred C------CCCCCcCccccC---------------------CcC-------------------cccCCHHHHHHHHHHHHH
Confidence 1 135999999999 777 999999999999999999
Q ss_pred cCCEEEEEeeccccccCCcCCcccCC---CCCC-cC-cccCCCCCC-----------------------C---CCCCccC
Q psy9001 332 AGLYVLLDVVHSHASKNVLDGLNEFD---GTQA-CF-FHDGPRGTH-----------------------P---LWDSRLF 380 (1351)
Q Consensus 332 ~GI~VILDvV~NH~~~~~~~~~~~f~---g~~~-~y-y~~~~~~~~-----------------------~---~w~~~~l 380 (1351)
+||+||||+|+||++.++.+...... .... .| +.....+.. . ....+++
T Consensus 91 ~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 170 (479)
T d1uoka2 91 RNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDEYYLHLFSKKQPDL 170 (479)
T ss_dssp TTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSSCSSCBBCTTSSBSEEEETTTTEEEECSSCTTSCBB
T ss_pred CCCEEEecccccccccccchhhhhhhccCCccccceeccccccCcCcCCccccCCCCccccccccCcceecccCCCcccc
Confidence 99999999999999988754321111 1111 11 111100000 0 0124689
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccccccccccc
Q psy9001 381 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 416 (1351)
Q Consensus 381 n~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~ 416 (1351)
|+.+|+||++|++++++|++ +||||||+|++..|.
T Consensus 171 n~~~~~v~~~i~~~~~~W~e-~gvDGfR~D~~~~i~ 205 (479)
T d1uoka2 171 NWDNEKVRQDVYEMMKFWLE-KGIDGFRMDVINFIS 205 (479)
T ss_dssp CTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSC
T ss_pred ccCCHHHHHHHHHHHHHHHH-cCCCCcccccceeee
Confidence 99999999999999999976 999999999999884
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Probab=100.00 E-value=5.5e-35 Score=342.75 Aligned_cols=319 Identities=18% Similarity=0.173 Sum_probs=197.0
Q ss_pred CceEEEeecCCcccCCCcccccccccccccceeccCCCcccccccccccccCCceEEEe-cCCCCCCCCcccccCcccee
Q psy9001 890 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELV-LPPNPDGDFNNWNREEFAYK 968 (1351)
Q Consensus 890 d~iIYE~HV~~~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~-ip~~~~g~~Y~~~~~~~~y~ 968 (1351)
+.+|||+||+.|......+....-. .+....=|+|.++..++++|+++|++.++|+ | +.
T Consensus 8 ~~~iY~i~~~~F~~~~~~~~~~~~~---~~~~~~gG~~~g~~~kLdyL~~LGv~~I~L~Pi-----------------~~ 67 (381)
T d2aaaa2 8 TQSIYFLLTDRFGRTDNSTTATCNT---GNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPI-----------------TE 67 (381)
T ss_dssp TCCEEECCHHHHCCTTCCSCCCCCG---GGCSCCCCCHHHHHHTHHHHHTTTCCEEEECCC-----------------EE
T ss_pred CCcEEEEEeCcccCCCCCCCCCCCC---CcCCcCCcCHHHHHHHHHHHHHcCCCEEEeCCC-----------------cc
Confidence 5579999999886443222111000 0111223788888888888888887544444 2 00
Q ss_pred cCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCC
Q psy9001 969 KLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGL 1047 (1351)
Q Consensus 969 ~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI 1047 (1351)
. .+. .......+||| +.||++|+|+|||.+|||+||++||++||
T Consensus 68 ~---------~~~--------------------------~~~~~~~~~gY~~~d~~~id~~~Gt~~~~k~lv~~aH~~Gi 112 (381)
T d2aaaa2 68 Q---------LPQ--------------------------DTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARGM 112 (381)
T ss_dssp E---------CCC--------------------------CBTTBCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHTTTC
T ss_pred C---------Ccc--------------------------CCCCCCCCcccccccccccccccCCHHHHHHHHHHHhhhhh
Confidence 0 000 00111246889 99999999999999999999999999999
Q ss_pred EEEEEeecccccCCccccCc---CCCCCC-CccccCCCCCCCCCC----------------CCCCCCCCCHHHHHHHHHH
Q psy9001 1048 YVLLDVVHSHASKNVLDGLN---EFDGTQ-ACFFHDGPRGTHPLW----------------DSRLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1048 ~VILDVV~NHts~~~~~~l~---~~dg~~-~~yf~~~~~g~~~~w----------------~~~dlN~~np~Vr~~lid~ 1107 (1351)
+||||+|+||++..+..... .++..+ ..+++... ...+| ...+||+.+|+||++|+++
T Consensus 113 ~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pdln~~np~v~~~~~~~ 190 (381)
T d2aaaa2 113 YLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYC--LITDWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDW 190 (381)
T ss_dssp EEEEEECCSBCCBSSCGGGCCGGGSBSCCSGGGBCCCC--BCCCTTCHHHHHHSBEECSSSEECBBCTTSHHHHHHHHHH
T ss_pred cccccccccccccccCCccccccccCCcccccccCCCc--cccccccccccCCCccCCccccCccccccchhhhhHHhhh
Confidence 99999999999987622111 111111 12222111 11111 1237999999999999999
Q ss_pred HHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q psy9001 1108 LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASC 1187 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~ 1187 (1351)
+++|+++|||||||||++.+|. ..||+.+++ .|+++++||.+...+...
T Consensus 191 ~~~~~~~~giDGfR~D~~~~~~--------------------------~~f~~~~~~-----~~~~~~igE~~~~~~~~~ 239 (381)
T d2aaaa2 191 VADLVSNYSVDGLRIDSVLEVQ--------------------------PDFFPGYNK-----ASGVYCVGEIDNGNPASD 239 (381)
T ss_dssp HHHHHHHHTCCEEEESCSTTSC--------------------------GGGHHHHHH-----HHTSEEEECCCCSCHHHH
T ss_pred hhhcccceeeeeeeeccccccc--------------------------HHHHHHHHh-----cccccccccccCCCchhh
Confidence 9999999999999999999871 234444433 378899999987766655
Q ss_pred cccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccccCcccccc-CC
Q psy9001 1188 RPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYL-PT 1266 (1351)
Q Consensus 1188 ~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~-p~ 1266 (1351)
.+...+ |+. +++++.. ..++.++..... .+..+.. .. ......+. +.
T Consensus 240 ~~~~~~---~~~---------~~d~~~~-----~~l~~~~~~~~~---~~~~~~~-----~~-------~~~~~~~~~~~ 287 (381)
T d2aaaa2 240 CPYQKV---LDG---------VLNYPIY-----WQLLYAFESSSG---SISNLYN-----MI-------KSVASDCSDPT 287 (381)
T ss_dssp GGGGGT---SSE---------EBCHHHH-----HHHHHHHSSTTS---CHHHHHH-----HH-------HHHHHHCSCGG
T ss_pred hccccc---ccc---------ccchhHH-----HHHHHHHhcCCc---cHHHHHH-----HH-------HhhhhccCCch
Confidence 544322 221 1112211 122222211100 0000000 00 00000111 11
Q ss_pred CCccceeeecccCCCCCcCCccccccc-CCHHHHHHHHHHHHccCCccEEEee-cccCCCCccceeeccCCcce
Q psy9001 1267 RTGIIDEVNLLNNVREERNNENNMKRY-IQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1267 ~~~~~~~vnfv~nHD~~rn~~~r~~~~-~~~~~~r~A~allltspGiP~If~g-~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
.. ++|++|||+.|. ... ...+++|+|++++||+||+||||+| |+...+.....+|.++.|.-
T Consensus 288 ~~-----~~fl~nHD~~R~-----~~~~~~~~~~~~a~a~llt~pG~P~iy~G~E~g~~g~~~p~~r~~~~~~~ 351 (381)
T d2aaaa2 288 LL-----GNFIENHDNPRF-----AKYTSDYSQAKNVLSYIFLSDGIPIVYAGEEQHYAGGKVPYNREATWLSG 351 (381)
T ss_dssp GS-----EECSCCTTSCCG-----GGTCCCHHHHHHHHHHHHHSSSEEEEETTTTTTCCCCTTTTTCCCGGGGT
T ss_pred hh-----ccccccCCchhh-----hcccCCHHHHHHHHHHHHHcCCCcEeEcCcccCCCCCCCcccccccCcCC
Confidence 12 799999998753 332 3457899999999999999999999 68888877777788887753
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Probab=100.00 E-value=1.2e-34 Score=347.41 Aligned_cols=170 Identities=19% Similarity=0.264 Sum_probs=132.0
Q ss_pred CCCCCCceEEEEecCCccC--CCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccc
Q psy9001 173 PKKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 250 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~ft~--~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~ 250 (1351)
|.+++++||||+||++|+. +...|||+||+++ |||||+||||+ |||||||+ .
T Consensus 3 P~W~~~~viYei~~~~F~d~~~~~~Gd~~Gi~~k-LdyLk~LGv~~----I~L~Pi~~--------------------~- 56 (478)
T d1m53a2 3 PAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEK-LDYLKSLGIDA----IWINPHYD--------------------S- 56 (478)
T ss_dssp CCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHT-HHHHHHHTCCE----EEECCCEE--------------------C-
T ss_pred CcccccCeEEEEecchhcCCCCCCccCHHHHHHh-hHHHHHcCCCE----EEECCCCC--------------------C-
Confidence 4467899999999999964 4568999999999 99999999999 99999553 2
Q ss_pred ccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHH
Q psy9001 251 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 330 (1351)
Q Consensus 251 ~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H 330 (1351)
+ ..+|||++.||| +++ |+||+++|||+||++||
T Consensus 57 -~------~~~~GY~~~d~~---------------------~vd-------------------~~~Gt~~df~~Lv~~aH 89 (478)
T d1m53a2 57 -P------NTDNGYDISNYR---------------------QIM-------------------KEYGTMEDFDSLVAEMK 89 (478)
T ss_dssp -C------CTTTTSSCSEEE---------------------EEC-------------------GGGCCHHHHHHHHHHHH
T ss_pred -C------CCCCCcCccCCC---------------------CcC-------------------cccCCHHHHHHHHHHHH
Confidence 1 235999999999 777 99999999999999999
Q ss_pred HcCCEEEEEeeccccccCCcCCcccCCCC-CC--cCc--ccC---------------------C-CCC-CC---CCCCcc
Q psy9001 331 KAGLYVLLDVVHSHASKNVLDGLNEFDGT-QA--CFF--HDG---------------------P-RGT-HP---LWDSRL 379 (1351)
Q Consensus 331 ~~GI~VILDvV~NH~~~~~~~~~~~f~g~-~~--~yy--~~~---------------------~-~~~-~~---~w~~~~ 379 (1351)
++||+||||+|+||++.++.+......+. .+ .+| .+. . .+. +. ....++
T Consensus 90 ~~Gi~VilD~V~NH~~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (478)
T d1m53a2 90 KRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQYYLHYFARQQPD 169 (478)
T ss_dssp HTTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSSCSSCCBCTTSSBSEEECTTTCCEEECSSCTTCCB
T ss_pred HCCCEEEeccccccccccCchhhhcccCCCCCccccccccCCCcCCCCccccccCCCCccccccccCcccccCcCCCCCc
Confidence 99999999999999998764432111000 00 000 000 0 000 00 112468
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccc
Q psy9001 380 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 416 (1351)
Q Consensus 380 ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~ 416 (1351)
+|+.+|+|+++|+++++||++ +||||||+|+|..+.
T Consensus 170 ln~~~~~V~~~i~~~~~~w~e-~gvDGfR~D~~~~~~ 205 (478)
T d1m53a2 170 LNWDNPKVREDLYAMLRFWLD-KGVSGMRFDTVATYS 205 (478)
T ss_dssp BCTTSHHHHHHHHHHHHHHHT-TTCCEEEETTGGGSS
T ss_pred ccchhHHHHHHHHHHHHHHHh-cCCceeccccceeec
Confidence 999999999999999999995 999999999999873
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Probab=100.00 E-value=2.9e-34 Score=338.02 Aligned_cols=179 Identities=16% Similarity=0.233 Sum_probs=129.9
Q ss_pred CCCCceEEEEecCCccCCC--------------------CCCCHHHHHHhhhH--HHHHcCCCcCceeEEEeeccccccc
Q psy9001 175 KPDNLKIYESHVGICTQEQ--------------------KCASYEDFVRVVIP--RIVKQGMAIPDKWIELLKKFKDEDW 232 (1351)
Q Consensus 175 ~~~~~vIYE~hvr~ft~~~--------------------~~G~~~gi~~~~L~--yLk~LGvt~~~~~I~L~Pif~~~~~ 232 (1351)
.+++.||||++|+.|...+ ..|||+||++| || |||+||||+ |||||||+....
T Consensus 11 ~~~~~viY~i~~drF~~g~~~~d~~~~~~~~~~~~~~~~~gGdl~Gi~~k-Ld~~YLk~LGv~~----I~L~Pi~~~~~~ 85 (406)
T d3bmva4 11 NYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINK-INDGYLTGMGVTA----IWIPQPVENIYA 85 (406)
T ss_dssp CCTTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHH-HHTSTTGGGTCCE----EEECCCEEECCC
T ss_pred CCccCeEEEechhhccCCCCCCCCCCCccCCCCCccCccCCcCHHHHHHh-cCHHHHHHcCCCE----EEECCccccccc
Confidence 5678899999999994210 14999999999 99 999999999 999996641100
Q ss_pred CccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCcccccccccccc
Q psy9001 233 NMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHK 312 (1351)
Q Consensus 233 ~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~i 312 (1351)
.... .++.+ ...+|||+++||+ +++
T Consensus 86 -------------~~~~-~~~~~--~~~~~gY~~~d~~---------------------~vd------------------ 110 (406)
T d3bmva4 86 -------------VLPD-STFGG--STSYHGYWARDFK---------------------RTN------------------ 110 (406)
T ss_dssp -------------CEEE-TTTEE--ECSTTSCSEEEEE---------------------EEC------------------
T ss_pred -------------ccCC-CCCCC--ChhhcCccccccc---------------------ccC------------------
Confidence 0000 01111 2356899999999 666
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCC---CcCc----ccCCCC-----CCCCC-----
Q psy9001 313 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ---ACFF----HDGPRG-----THPLW----- 375 (1351)
Q Consensus 313 d~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~---~~yy----~~~~~~-----~~~~w----- 375 (1351)
|+||+++|||+||++||++||+||||+|+|||+..+.+......... ..++ ...... ....|
T Consensus 111 -p~~Gt~~dfk~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (406)
T d3bmva4 111 -PYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFHHYGGTDFSSYED 189 (406)
T ss_dssp -TTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTCCBCCSCBCCCSSHHH
T ss_pred -cccccHHHHHHHHHHHHhccccceeeeecccccccccchhhhcccCccccCCccccccccccccccccccCcccccccc
Confidence 99999999999999999999999999999999988765433222110 0000 000000 00111
Q ss_pred -------CCccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 376 -------DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 376 -------~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
+..+||+.+|+|+++|++++++|++ +||||||+|++..+
T Consensus 190 ~~~~~~~~~~dln~~~~~v~~~l~~~~~~~~~-~giDGfR~D~~~~~ 235 (406)
T d3bmva4 190 GIYRNLFDLADLNQQNSTIDSYLKSAIKVWLD-MGIDGIRLDAVKHM 235 (406)
T ss_dssp HHHSBSTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEESCGGGS
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHhh-cCCCcccccccccc
Confidence 2357999999999999999999996 99999999999987
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=1.1e-33 Score=344.12 Aligned_cols=145 Identities=15% Similarity=0.182 Sum_probs=112.8
Q ss_pred ccccc-ccccccccCCCCC-------HHHHHHHHHHH-HHcCCEEEEEeecccccCCccccCcCCCC--CCCccccCCC-
Q psy9001 1014 EQLKY-LVDECHKAGLFGT-------PEQLKYLVDEC-HKAGLYVLLDVVHSHASKNVLDGLNEFDG--TQACFFHDGP- 1081 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt-------~edfK~LV~~a-H~~GI~VILDVV~NHts~~~~~~l~~~dg--~~~~yf~~~~- 1081 (1351)
.+||| ++|||+|+|+||| ++|||+||++| |++||+||||+|+||||..|......... ....||....
T Consensus 153 ~~wGYdv~dy~~i~p~~Gt~~d~~~~l~Efk~lV~a~~H~rGIkVIlD~V~NHts~~h~wf~~~~~~~~~~~~y~~~~~~ 232 (563)
T d2fhfa5 153 YNWGYDPFHYTVPEGSYATDPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNET 232 (563)
T ss_dssp CCCCCCEEEEEEECSTTSSCCSTTHHHHHHHHHHHHHHHTSCCEEEEEECTTEESCCSSSCTTCCHHHHSTTTSBCBCTT
T ss_pred CCCCCChhhcccccCccCcCcchhhHHHHHHHHHHHHhhccCceeeecCcccccCCCCCchhhcccCCCCCcceeccCCC
Confidence 46899 9999999999999 78999999987 99999999999999999998433221111 1122333222
Q ss_pred CCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHH
Q psy9001 1082 RGTHPLW-DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLM 1160 (1351)
Q Consensus 1082 ~g~~~~w-~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~ 1160 (1351)
.+....| +++.+++.++.++.++++++++|+.++++||||+|++..+ ...++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~dg~r~D~~~~~--------------------------~~~~~~ 286 (563)
T d2fhfa5 233 TGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYH--------------------------PKAQIL 286 (563)
T ss_dssp TCCBCCTTSSEEBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS--------------------------BHHHHH
T ss_pred CCcccCCCCCcccCccchhHHHHHHHhhHHHHhhhcccccchhhhhhc--------------------------chhhhh
Confidence 2222233 6778999999999999999999999999999999999877 234445
Q ss_pred HHHHHHHhhCCCeEEEEccCCCCC
Q psy9001 1161 VANKFLHDKYPEIITIAEDVSGMP 1184 (1351)
Q Consensus 1161 ~~~~~l~~~~Pd~ilIaE~~~~~p 1184 (1351)
.+...+....|++..++|.+...+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~ 310 (563)
T d2fhfa5 287 SAWERIKALNPDIYFFGEGWDSNQ 310 (563)
T ss_dssp HHHHHHHTTCTTCEEEECCCCCSC
T ss_pred hhhHHHhhhCcccccccccccccc
Confidence 667778888999999999875443
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Probab=100.00 E-value=3.8e-34 Score=335.53 Aligned_cols=172 Identities=21% Similarity=0.260 Sum_probs=130.2
Q ss_pred CCCceEEEEecCCccCC--CC------------CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEc
Q psy9001 176 PDNLKIYESHVGICTQE--QK------------CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTL 241 (1351)
Q Consensus 176 ~~~~vIYE~hvr~ft~~--~~------------~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~ 241 (1351)
|++.+|||+||+.|... .. .|||+|++++ |||||+||||+ |||||||+.
T Consensus 6 W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gG~~~g~~~k-LdyL~~LGv~~----I~L~Pi~~~------------ 68 (381)
T d2aaaa2 6 WRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDH-LDYIEGMGFTA----IWISPITEQ------------ 68 (381)
T ss_dssp HTTCCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHT-HHHHHTTTCCE----EEECCCEEE------------
T ss_pred hCCCcEEEEEeCcccCCCCCCCCCCCCCcCCcCCcCHHHHHHH-HHHHHHcCCCE----EEeCCCccC------------
Confidence 45678999999988532 11 2999999999 99999999999 999996641
Q ss_pred cccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHH
Q psy9001 242 TNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQ 321 (1351)
Q Consensus 242 ~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~e 321 (1351)
.. ........+|||++.+|+ +++ +++|+.++
T Consensus 69 ----~~-----~~~~~~~~~~gY~~~d~~---------------------~id-------------------~~~Gt~~~ 99 (381)
T d2aaaa2 69 ----LP-----QDTADGEAYHGYWQQKIY---------------------DVN-------------------SNFGTADN 99 (381)
T ss_dssp ----CC-----CCBTTBCSTTSCSEEEEE---------------------EEC-------------------TTTCCHHH
T ss_pred ----Cc-----cCCCCCCCCccccccccc---------------------ccc-------------------cccCCHHH
Confidence 10 111112356999999999 777 99999999
Q ss_pred HHHHHHHHHHcCCEEEEEeeccccccCCcCCcc---cCCCCC-CcCcccCCCCCCCCCC----------------CccCC
Q psy9001 322 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN---EFDGTQ-ACFFHDGPRGTHPLWD----------------SRLFN 381 (1351)
Q Consensus 322 fk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~---~f~g~~-~~yy~~~~~~~~~~w~----------------~~~ln 381 (1351)
||+||++||++||+||||+|+||++.++.+... .+...+ ..|++.. ....+|. .++||
T Consensus 100 ~k~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pdln 177 (381)
T d2aaaa2 100 LKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPY--CLITDWDNLTMVEDCWEGDTIVSLPDLD 177 (381)
T ss_dssp HHHHHHHHHTTTCEEEEEECCSBCCBSSCGGGCCGGGSBSCCSGGGBCCC--CBCCCTTCHHHHHHSBEECSSSEECBBC
T ss_pred HHHHHHHHhhhhhcccccccccccccccCCccccccccCCcccccccCCC--ccccccccccccCCCccCCccccCcccc
Confidence 999999999999999999999999987644221 112211 1222211 1111121 25799
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 382 YSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 382 ~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
+.+|+||++|++++++|+++|||||||||++..|
T Consensus 178 ~~np~v~~~~~~~~~~~~~~~giDGfR~D~~~~~ 211 (381)
T d2aaaa2 178 TTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEV 211 (381)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTS
T ss_pred ccchhhhhHHhhhhhhcccceeeeeeeecccccc
Confidence 9999999999999999999999999999999887
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Probab=100.00 E-value=8e-34 Score=332.36 Aligned_cols=211 Identities=27% Similarity=0.384 Sum_probs=165.9
Q ss_pred CCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccc
Q psy9001 174 KKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 253 (1351)
Q Consensus 174 ~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~ 253 (1351)
.+.+++||||+|||+|+++ |||+||+++ |||||+||||+ |||||||+ + |.
T Consensus 7 ~~~~~~viYe~~v~~f~~~---Gd~~gi~~~-ldyi~~LGv~~----i~l~Pv~~--------------------~--~~ 56 (400)
T d1eh9a3 7 LKKEDLIIYEIHVGTFTPE---GTFEGVIRK-LDYLKDLGITA----IEIMPIAQ--------------------F--PG 56 (400)
T ss_dssp CCSSSCCEEEECTTTSSSS---CSHHHHHHT-HHHHHHHTCCE----EEECCCBC--------------------C--SS
T ss_pred CCCcCeEEEEEehhhhCCC---CCHHHHHHH-hHHHHHcCCCE----EEeCCcCc--------------------C--CC
Confidence 3567899999999999875 999999999 99999999999 99999553 3 32
Q ss_pred cCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcC
Q psy9001 254 AESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 333 (1351)
Q Consensus 254 ~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~G 333 (1351)
..+|||++.||+ +++ |+|||++|||+||++||++|
T Consensus 57 -----~~~~GY~~~d~~---------------------~vd-------------------~~~Gt~~dlk~lv~~~h~~g 91 (400)
T d1eh9a3 57 -----KRDWGYDGVYLY---------------------AVQ-------------------NSYGGPEGFRKLVDEAHKKG 91 (400)
T ss_dssp -----SCCCSTTCCCTT---------------------CBC-------------------STTCCHHHHHHHHHHHHHTT
T ss_pred -----CCCCCCCCCCCC---------------------CcC-------------------cccCCHHHHHHHHHHHHhcC
Confidence 235999999999 777 99999999999999999999
Q ss_pred CEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccc
Q psy9001 334 LYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 334 I~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~ 413 (1351)
|+||||+|+|||+.++.+.... ..||....... ..+..+..++.+|+|+++|+++++||++++||||||+|+|.
T Consensus 92 i~VilD~V~NH~s~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~np~v~~~l~d~~~~Wl~~~gvDGfR~Daa~ 165 (400)
T d1eh9a3 92 LGVILDVVYNHVGPEGNYMVKL-----GPYFSQKYKTP-WGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVH 165 (400)
T ss_dssp CEEEEEECCSCCCSSSCCHHHH-----SCCSCSSCCCS-SSCCCCSSSTTHHHHHHHHHHHHHHHHHHSCCCCEEETTGG
T ss_pred CceeeecccccccCCCcchhhh-----ccccccccccc-cccccccccccccHHHHHHHHHHHHHHhhcccceEEeechh
Confidence 9999999999999987653211 12332211111 11223456778999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC
Q psy9001 414 SMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE 489 (1351)
Q Consensus 414 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~ 489 (1351)
.|... ....+++++++.+++. +.++++|.+...|.++.+.+.++.+++..++
T Consensus 166 ~i~~~----------------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (400)
T d1eh9a3 166 AIIDT----------------------SPKHILEEIADVVHKY--NRIVIAESDLNDPRVVNPKEKCGYNIDAQWV 217 (400)
T ss_dssp GCCCC----------------------SSSCHHHHHHHHHHHT--TCCEEECCCSCCTTTTSCGGGTCCCCSEEEC
T ss_pred hhcch----------------------hhhhhHHHHHHHHhhh--hhhhhhhccccCccccchhhhccceeccccc
Confidence 88311 1224678888888765 4677788888888888888777777776654
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=100.00 E-value=1.1e-33 Score=326.10 Aligned_cols=249 Identities=15% Similarity=0.138 Sum_probs=152.1
Q ss_pred cccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCC-CCC-------
Q psy9001 1013 PEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG-PRG------- 1083 (1351)
Q Consensus 1013 p~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~-~~g------- 1083 (1351)
..+||| +.|| .|+|+|||++|||+||++||++||+||||+|+||++..+.............|+... ..+
T Consensus 73 ~~~hgY~~~dy-~vd~~~Gt~~df~~LV~~aH~~GI~VIlD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (357)
T d1gcya2 73 GGGEGYFWHDF-NKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPNDCD 151 (357)
T ss_dssp BCCSSTTCSSS-CSCSSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCSSCSCCCCSSSSCBGGGSCCCSSSCBTTB
T ss_pred CCCCCcChhhc-ccCccCCCHHHHHHHHHHHHhcCCeEEEEEeccccCCCCCccccccccCCCccccccCCCCCCCCCCC
Confidence 367999 8886 799999999999999999999999999999999999988544333322222232211 111
Q ss_pred CCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHH
Q psy9001 1084 THP--LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMV 1161 (1351)
Q Consensus 1084 ~~~--~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~ 1161 (1351)
... .++..+||++||+|++++++++++|++++||||||||+|.++ ...+++.
T Consensus 152 ~~~~~~~~~~dln~~np~v~~~~~~~~~~~~~~~giDGfR~Daa~~i--------------------------~~~~~~~ 205 (357)
T d1gcya2 152 DGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGY--------------------------APERVNS 205 (357)
T ss_dssp SSCCSTTSTTBBCTTSHHHHHHHHHHHHHHHHHSCEEEEEESCGGGS--------------------------CHHHHHH
T ss_pred ccccccccccccCCCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhcC--------------------------CHHHHHH
Confidence 011 113458999999999999999999999999999999999988 2334443
Q ss_pred HHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccC
Q psy9001 1162 ANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLD 1241 (1351)
Q Consensus 1162 ~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~ 1241 (1351)
.++...|++.++||.|.+.+...........++...+...... ... ......+...+..
T Consensus 206 ---~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~------------ 264 (357)
T d1gcya2 206 ---WMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQIIKDWSDR-----AKC-PVFDFALKERMQN------------ 264 (357)
T ss_dssp ---HHHHHCTTSEEEECCCCCGGGSCTTSGGGGSCHHHHHHHHHHH-----HTS-CEECHHHHHHHHH------------
T ss_pred ---HHhhcCCCceeeeeeccCccchhhhhhhccchhhhhhHhHhhh-----ccc-cccchhhhhhhhh------------
Confidence 3556689999999998665444333222111111000000000 000 0000011111100
Q ss_pred CCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCc---ccccccCCHHHHHHHHHHHHccCCccEEEee
Q psy9001 1242 PGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNE---NNMKRYIQTESNMNGFGIQTLPTQSPLYLVA 1318 (1351)
Q Consensus 1242 ~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~---~r~~~~~~~~~~r~A~allltspGiP~If~g 1318 (1351)
+...... ...........+.. ++||++|||+.|... .........+++|+|++++||+||+||||+|
T Consensus 265 -~~~~~~~----~~~~~~~~~~~~~~-----~v~fl~NHD~~r~~~~~~~~~~~~~~~~~~~la~alllt~pGiP~IyyG 334 (357)
T d1gcya2 265 -GSIADWK----HGLNGNPDPRWREV-----AVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWD 334 (357)
T ss_dssp -SCGGGGG----GSGGGCSSHHHHTT-----EEECSCCTTTSBCSSGGGBCCSSCCCGGGHHHHHHHHHHSSSEEEEEHH
T ss_pred -hhHHHHH----HHHhhCccccccce-----eEEeecCCCcccccccCCccccccCHHHHHHHHHHHHHhCCCccEEEcC
Confidence 0000000 00000000011222 289999999987622 1222223457789999999999999999999
Q ss_pred c
Q psy9001 1319 K 1319 (1351)
Q Consensus 1319 ~ 1319 (1351)
+
T Consensus 335 d 335 (357)
T d1gcya2 335 H 335 (357)
T ss_dssp H
T ss_pred C
Confidence 5
|
| >d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
Probab=100.00 E-value=1.4e-33 Score=334.01 Aligned_cols=278 Identities=14% Similarity=0.165 Sum_probs=169.0
Q ss_pred Ccccccc-ccccccccCCCCCHHHHHHHHHHHHHcC----CEEEEEeecccccCCccccCcCCCC---------CCCccc
Q psy9001 1012 TPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG----LYVLLDVVHSHASKNVLDGLNEFDG---------TQACFF 1077 (1351)
Q Consensus 1012 sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~G----I~VILDVV~NHts~~~~~~l~~~dg---------~~~~yf 1077 (1351)
++++||| ++||++|||+|||++|||+||++||++| |+||||+|+||++..+.. +..... ....|+
T Consensus 95 ~~~~~GY~~~d~~~id~~~Gt~~d~~~lv~~~H~~g~~~~I~VilD~V~NH~s~~~~~-~~~~~~~~~~~~~~~~~~~~~ 173 (432)
T d1ji1a3 95 APTNHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHPW-FDKYNNFSSQGAYESQSSPWY 173 (432)
T ss_dssp CSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHCSSSSSCCEEEEEECCSBCCTTSTT-TCTTCCSSSCCTTTCTTCTTG
T ss_pred CCCCCCcccccccccCcccCCHHHHHHHHHHHHHhhhhcceeEeccccccccCCCchh-HhhccCccccccccccccccc
Confidence 4567999 9999999999999999999999999987 889999999999998732 221111 111111
Q ss_pred cCC-----CCCCCCCC---CCCCCCCCC--HHHHHHHH----HHHHHHH-HHhCCCeEEEcCcccccccCCCCCCCCCCC
Q psy9001 1078 HDG-----PRGTHPLW---DSRLFNYSE--IEVLRFLL----SNLRWYL-EEYQFDGFRFDGVTSMLYHNHGCGEGFSGH 1142 (1351)
Q Consensus 1078 ~~~-----~~g~~~~w---~~~dlN~~n--p~Vr~~li----d~l~yWl-~eygVDGFRfD~a~~m~~~~~g~~~~~~~~ 1142 (1351)
... +......+ ...++|+.+ +.||++++ +++++|+ +++||||||+|++.++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~ln~~n~~~~v~~~~~~~~~~~~~~wl~~~~gvDGfR~D~~~~i~~~----------- 242 (432)
T d1ji1a3 174 NYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVDAN----------- 242 (432)
T ss_dssp GGBCEEETTTEECEETTEEEEEBBBCCSTTCHHHHHHTTSTTSHHHHHHSTTTCCCEEEETTGGGCBST-----------
T ss_pred ccccccccccccccccccCccCccccCCCcHHHHHHHHHHHHHHHHHhhhhhcCccceeeeceeeeccC-----------
Confidence 100 00000011 123788887 45666665 5667666 5799999999999987321
Q ss_pred cccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCch
Q psy9001 1143 YDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGK 1222 (1351)
Q Consensus 1143 ~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~ 1222 (1351)
+....+.....+|+++++.+++.+|++++|||.+........... .++.... +. .+...
T Consensus 243 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igE~~~~~~~~~~~~~----~~~~~~~---------~~----~~~~~ 301 (432)
T d1ji1a3 243 ----GNNGSDVTNHQIWSEFRNAVKGVNSNAAIIGEYWGNANPWTAQGN----QWDAATN---------FD----GFTQP 301 (432)
T ss_dssp ----TCCCSSHHHHHHHHHHHHHHHHHCTTCEEEECCSSCCGGGTTTSS----SCSEEBC---------TT----TTHHH
T ss_pred ----CCCcccccchhHHHHHHHHHHhhCCCeEEEeeeccCccceecccc----ccchhhh---------hh----hhhHH
Confidence 111235678899999999999999999999998855443322211 1110000 00 00111
Q ss_pred hHhhhccCCCCCCCccccCCCcccccccCCcccc-cCccccccCCCCccceeeecccCCCCCcCCcccccccC--CHHHH
Q psy9001 1223 YKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR-RNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI--QTESN 1299 (1351)
Q Consensus 1223 ~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r-~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~--~~~~~ 1299 (1351)
....+... .+............ ..+... ......-.+... ++|++|||+.|. .... ...++
T Consensus 302 ~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~f~~nHD~~R~-----~s~~~~~~~~~ 365 (432)
T d1ji1a3 302 VSEWITGK-----DYQNNSASISTTQF-DSWLRGTRANYPTNVQQSM-----MNFLSNHDITRF-----ATRSGGDLWKT 365 (432)
T ss_dssp HHHHHTSB-----CTTSCBCCCCHHHH-HHHHHHHHTTSCHHHHTTC-----EEESCCTTSCCH-----HHHTTTCHHHH
T ss_pred HHHHhhcc-----hhhcccccccHHHH-HHHHHHhHhhccccccccc-----ccccccCCccch-----hhhcCCHHHHH
Confidence 12222110 00000000000000 000000 000000011222 899999998753 2222 23678
Q ss_pred HHHHHHHHccCCccEEEee-cccCCCCccceeeccCCcce
Q psy9001 1300 MNGFGIQTLPTQSPLYLVA-KIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1300 r~A~allltspGiP~If~g-~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
++|++++||+||+||||+| |+...+.....+|.||+|.-
T Consensus 366 ~~a~~~llt~pG~P~iyyGdE~G~~g~~d~~~R~~~~W~~ 405 (432)
T d1ji1a3 366 YLALIFQMTYVGTPTIYYGDEYGMQGGADPDNRRSFDWSQ 405 (432)
T ss_dssp HHHHHHHTTSSSEEEEETTGGGTCCCCSTTGGGCCCCTTS
T ss_pred HHHHHHHHHcCCCcEEEcCHhhCCCCCCCcccccCCCCCc
Confidence 9999999999999999999 88888888899999999964
|
| >d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
Probab=99.98 E-value=2.8e-33 Score=331.40 Aligned_cols=258 Identities=16% Similarity=0.118 Sum_probs=187.0
Q ss_pred CCCCCCceEEEEecCCccCCC--------------------------------------CCCCHHHHHHhhhHHHHH-cC
Q psy9001 173 PKKPDNLKIYESHVGICTQEQ--------------------------------------KCASYEDFVRVVIPRIVK-QG 213 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~ft~~~--------------------------------------~~G~~~gi~~~~L~yLk~-LG 213 (1351)
|.++++.||||++++.|...+ .-|||+||+++ |||||+ ||
T Consensus 5 p~W~~~~viY~i~~drF~dgd~~nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGdl~Gi~~k-LdYl~~~LG 83 (432)
T d1ji1a3 5 PDWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFGGDLAGIDQK-LGYIKKTLG 83 (432)
T ss_dssp CHHHHHCCEEEECGGGTCCSCGGGCCCTTSCEETTEECEECCTTSCCSCCTTSCGGGEECCCCHHHHHHT-HHHHHTTTC
T ss_pred CccccCCeEEEEeccccCCCCCccccccccccccCCccccccccccccccccccccccccCcCHHHHHHH-hhHHHhhcC
Confidence 446789999999999984210 13999999998 999987 99
Q ss_pred CCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccc
Q psy9001 214 MAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRA 293 (1351)
Q Consensus 214 vt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~ 293 (1351)
||+ |||||||+ . ..+|||++.||+ ++
T Consensus 84 v~~----I~L~Pi~~--------------------~---------~~~~GY~~~d~~---------------------~i 109 (432)
T d1ji1a3 84 ANI----LYLNPIFK--------------------A---------PTNHKYDTQDYM---------------------AV 109 (432)
T ss_dssp CCE----EEESCCEE--------------------C---------SSSSCCSCSEEE---------------------EE
T ss_pred CCE----EEeCCCCc--------------------C---------CCCCCccccccc---------------------cc
Confidence 999 99999553 2 135999999999 77
Q ss_pred cccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcC----CEEEEEeeccccccCCcCCcccC--------CCCCC
Q psy9001 294 CEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG----LYVLLDVVHSHASKNVLDGLNEF--------DGTQA 361 (1351)
Q Consensus 294 ~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~G----I~VILDvV~NH~~~~~~~~~~~f--------~g~~~ 361 (1351)
+ |+|||++|||+||++||++| |+||||+|+||++..+.+....- .....
T Consensus 110 d-------------------~~~Gt~~d~~~lv~~~H~~g~~~~I~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~ 170 (432)
T d1ji1a3 110 D-------------------PAFGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHPWFDKYNNFSSQGAYESQSS 170 (432)
T ss_dssp C-------------------TTTCCHHHHHHHHHHHHCSSSSSCCEEEEEECCSBCCTTSTTTCTTCCSSSCCTTTCTTC
T ss_pred C-------------------cccCCHHHHHHHHHHHHHhhhhcceeEeccccccccCCCchhHhhccCcccccccccccc
Confidence 7 99999999999999999987 78999999999999876542111 11111
Q ss_pred cCcccCC-----CCCCCCCC---CccCCCCC--HHHHHHHH----HHHHHHH-HHcCCCccccccccccccccCCCCCCC
Q psy9001 362 CFFHDGP-----RGTHPLWD---SRLFNYSE--IEVLRFLL----SNLRWYL-DEYQFDGFRFDGVTSMLYHNHGCGEGF 426 (1351)
Q Consensus 362 ~yy~~~~-----~~~~~~w~---~~~ln~~~--p~v~~~l~----~~l~~W~-~e~~vDGfR~D~a~~~~~~~~~~~~~f 426 (1351)
.|+.... ......+. .+++|+.+ +.||.+++ +++++|+ +++||||||+|++..+.. .+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~n~~~~v~~~~~~~~~~~~~~wl~~~~gvDGfR~D~~~~i~~-------~~ 243 (432)
T d1ji1a3 171 PWYNYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVDA-------NG 243 (432)
T ss_dssp TTGGGBCEEETTTEECEETTEEEEEBBBCCSTTCHHHHHHTTSTTSHHHHHHSTTTCCCEEEETTGGGCBS-------TT
T ss_pred cccccccccccccccccccccCccCccccCCCcHHHHHHHHHHHHHHHHHhhhhhcCccceeeeceeeecc-------CC
Confidence 2221110 00000111 25788877 45665555 5677776 469999999999998721 11
Q ss_pred CCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcC---------------------------------------
Q psy9001 427 SGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV--------------------------------------- 467 (1351)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~--------------------------------------- 467 (1351)
. ...+....++|+++++.++..+|++++|||.+
T Consensus 244 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~igE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (432)
T d1ji1a3 244 N--------NGSDVTNHQIWSEFRNAVKGVNSNAAIIGEYWGNANPWTAQGNQWDAATNFDGFTQPVSEWITGKDYQNNS 315 (432)
T ss_dssp C--------CCSSHHHHHHHHHHHHHHHHHCTTCEEEECCSSCCGGGTTTSSSCSEEBCTTTTHHHHHHHHTSBCTTSCB
T ss_pred C--------CcccccchhHHHHHHHHHHhhCCCeEEEeeeccCccceeccccccchhhhhhhhhHHHHHHhhcchhhccc
Confidence 1 12344567899999999999999999999975
Q ss_pred ------------------------------------------------------------CCCCCcccccccCCCCCCCc
Q psy9001 468 ------------------------------------------------------------SGMPASCRPVTEGGTGFDYR 487 (1351)
Q Consensus 468 ------------------------------------------------------------~~~p~~~~~~~~gg~gfd~~ 487 (1351)
+|.|.|+++.|.|-.|....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~R~~s~~~~~~~~~~~a~~~llt~pG~P~iyyGdE~G~~g~~d~ 395 (432)
T d1ji1a3 316 ASISTTQFDSWLRGTRANYPTNVQQSMMNFLSNHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQGGADP 395 (432)
T ss_dssp CCCCHHHHHHHHHHHHTTSCHHHHTTCEEESCCTTSCCHHHHTTTCHHHHHHHHHHHTTSSSEEEEETTGGGTCCCCSTT
T ss_pred ccccHHHHHHHHHHhHhhcccccccccccccccCCccchhhhcCCHHHHHHHHHHHHHHcCCCcEEEcCHhhCCCCCCCc
Confidence 46777777777663333332
Q ss_pred CC-----cCCCCCCCcHHHHHHHHHHhhhcccccccC
Q psy9001 488 LE-----IRPDMSDMTVGTFDAAMNTTEERFKWLSAD 519 (1351)
Q Consensus 488 ~~-----~~~d~~~~sl~~f~k~L~~Lr~~~~~L~~g 519 (1351)
.+ |.......++++|+|+|++||+++|+|+.|
T Consensus 396 ~~R~~~~W~~~~~~~~l~~~~~~L~~lR~~~paL~~G 432 (432)
T d1ji1a3 396 DNRRSFDWSQATPSNSAVALTQKLITIRNQYPALRTG 432 (432)
T ss_dssp GGGCCCCTTSSSTTSHHHHHHHHHHHHHHHCHHHHHS
T ss_pred ccccCCCCCcCCCchHHHHHHHHHHHHHhcCHHhhCC
Confidence 22 444445678899999999999999999865
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.98 E-value=9.9e-33 Score=335.62 Aligned_cols=196 Identities=17% Similarity=0.205 Sum_probs=136.5
Q ss_pred CCCCceEEEEecCCccC------CCCCCCHHH-------HHHhhhHHHHHcCCCcCceeEEEeecccccccCc--cc---
Q psy9001 175 KPDNLKIYESHVGICTQ------EQKCASYED-------FVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNM--GN--- 236 (1351)
Q Consensus 175 ~~~~~vIYE~hvr~ft~------~~~~G~~~g-------i~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~--~~--- 236 (1351)
+++++||||+|||+|+. ++.+|||++ ++++ |||||+||||+ |||||||++..-+- +.
T Consensus 18 ~~~~~viYei~vr~F~d~~~d~~~~~~G~f~~~~~~~~~~i~~-LdyL~~LGVta----iwL~Pi~~~~~~d~~~~~~~~ 92 (563)
T d2fhfa5 18 DLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQH-LKQLSASGVTH----IELLPVFDLATVNEFSDKVAD 92 (563)
T ss_dssp HHHTCEEEEECHHHHHTTCTTSCGGGTTSGGGGGCTTSHHHHH-HHHHHHHTCCE----EEESCCEEESSSCCCGGGCCC
T ss_pred CHHHcEEEEecchhhhccCCCCccccCcChhhccccCcchhhh-HHHHHHcCCCE----EEeCCcccCCccccccccccc
Confidence 45799999999999963 234578876 6776 99999999999 99999875311000 00
Q ss_pred ----------------------------eEEE-ccccccccc--------cccccCCCCccccCcccccccccchhhhcc
Q psy9001 237 ----------------------------IVHT-LTNRRYMEK--------TVAYAESHDQALVGDKTIAFWLMDKEMYTH 279 (1351)
Q Consensus 237 ----------------------------ii~~-~~~~~~~e~--------~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~ 279 (1351)
++.. +.+....++ ..+.......++|||+++|||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wGYdv~dy~--------- 163 (563)
T d2fhfa5 93 IQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYT--------- 163 (563)
T ss_dssp TTSBHHHHHHHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEEEEE---------
T ss_pred cccccccccccccccchhhhhhhccccchhhhhhhcccccccchhhhhhcccccccccCcCCCCCChhhcc---------
Confidence 0000 000000000 000011123568999999999
Q ss_pred cccCCCCchhcccccccCCCCccccccccccccCCCCCC-------HHHHHHHHHHH-HHcCCEEEEEeeccccccCCcC
Q psy9001 280 MSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGT-------PEQLKYLVDEC-HKAGLYVLLDVVHSHASKNVLD 351 (1351)
Q Consensus 280 ~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~-------~~efk~LV~~~-H~~GI~VILDvV~NH~~~~~~~ 351 (1351)
+++ |+||| ++|||+||++| |++||+||||+|+|||+..|.|
T Consensus 164 ------------~i~-------------------p~~Gt~~d~~~~l~Efk~lV~a~~H~rGIkVIlD~V~NHts~~h~w 212 (563)
T d2fhfa5 164 ------------VPE-------------------GSYATDPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPT 212 (563)
T ss_dssp ------------EEC-------------------STTSSCCSTTHHHHHHHHHHHHHHHTSCCEEEEEECTTEESCCSSS
T ss_pred ------------ccc-------------------CccCcCcchhhHHHHHHHHHHHHhhccCceeeecCcccccCCCCCc
Confidence 777 77777 78999999987 8999999999999999999887
Q ss_pred CcccCCC-CCC-cCcccCCCCC-CCCC-CCccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 352 GLNEFDG-TQA-CFFHDGPRGT-HPLW-DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 352 ~~~~f~g-~~~-~yy~~~~~~~-~~~w-~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
+...... ..+ .||....... ...| +++.+++.++.++.++++++++|+.++++||||+|++..+
T Consensus 213 f~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~dg~r~D~~~~~ 280 (563)
T d2fhfa5 213 DRTSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYH 280 (563)
T ss_dssp CTTCCHHHHSTTTSBCBCTTTCCBCCTTSSEEBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS
T ss_pred hhhcccCCCCCcceeccCCCCCcccCCCCCcccCccchhHHHHHHHhhHHHHhhhcccccchhhhhhc
Confidence 6433211 112 2333333222 2223 4678999999999999999999999999999999999876
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=3.1e-33 Score=342.48 Aligned_cols=240 Identities=14% Similarity=0.069 Sum_probs=162.3
Q ss_pred cCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEEecCCC-CccceeeeeeCCCCCCCCccCC-C-C
Q psy9001 96 LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPV-VGHAYEQRIWNPKPQDKHKWTS-S-K 172 (1351)
Q Consensus 96 ~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~-~~~~~~~~~~~p~~~~~~~w~~-~-~ 172 (1351)
...|.|...||+..... .+.+..+ ..|. +++||||+.++..+. .+.+.+. +. ..+..|.. . .
T Consensus 13 ~~~g~~~y~~~~~~~~~-------~~~~~~~-~~~~--~~~DPya~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~ 77 (572)
T d1gjwa2 13 KATGKRIYAVPKLWIPG-------FFKKFDE-KSGR--CFVDPYELGAEITDWILNQSREW---DY--SQPLSFLKGEKT 77 (572)
T ss_dssp HCCCCCCEEECGGGSCT-------TCCCCEE-ETTE--EEECHHHHHHHHHHHHHTTCCSS---CT--TSCHHHHHTCCS
T ss_pred hccCceEEEeCCCcCCc-------ccceecc-CCCe--EEecCcccccccccccccccccc---cc--ccccchhcCCCC
Confidence 34688999998874331 2222222 3454 567999998754322 1111111 11 12234432 2 2
Q ss_pred CCCCCCceEEEEecCCccCCC----------------CCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccc
Q psy9001 173 PKKPDNLKIYESHVGICTQEQ----------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGN 236 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~ft~~~----------------~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ 236 (1351)
|.+++++||||+|||+|+..+ ..|||+|++++ |||||+||||+ |||||||++.
T Consensus 78 p~w~~~~viYei~v~~F~~~~~~g~~~~~~~~~~g~~~~Gd~~Gi~~k-LdYLk~LGvta----I~L~Pi~~~~------ 146 (572)
T d1gjwa2 78 PDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLL-LPFVKSLGADA----IYLLPVSRMS------ 146 (572)
T ss_dssp GGGGGGCCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHT-HHHHHHHTCCE----EEECCCEEEC------
T ss_pred CccccCcEEEEEechhhcCCCCCCCcccccCcccCccCCCCHHHHHHh-hHHHHHcCCCE----EEeCCcccCc------
Confidence 346799999999999997321 24999999998 99999999999 9999976531
Q ss_pred eEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCC
Q psy9001 237 IVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLF 316 (1351)
Q Consensus 237 ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~ 316 (1351)
.......++|||++.+|| +++++|++. .++++
T Consensus 147 ----------------~~~~~~~~~~GY~~~dy~---------------------~~dp~~~~~-----------~~~~~ 178 (572)
T d1gjwa2 147 ----------------DLFKKGDAPSPYSVKNPM---------------------ELDERYHDP-----------LLEPF 178 (572)
T ss_dssp ----------------CSSCSSSSCCTTSEEEEE---------------------EECGGGSCG-----------GGTTS
T ss_pred ----------------cccCCCCCCCCCCccCCC---------------------CCCcccccc-----------cccCC
Confidence 111123567999999999 666555542 23889
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccC-----CCCCC---C---------------
Q psy9001 317 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG-----PRGTH---P--------------- 373 (1351)
Q Consensus 317 G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~-----~~~~~---~--------------- 373 (1351)
|+++|||+||++||++||+||||||+|||+.++.+... .+.||... .++.. .
T Consensus 179 Gt~~dfk~lV~~~H~~GI~VIlDvV~NHts~~~~~~~~-----~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 253 (572)
T d1gjwa2 179 KVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIRE-----HPDWFYWIKVEELADYTPPRAEELPFKVPDEDELEII 253 (572)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEECTTEEETTCGGGTT-----CGGGSCCEEGGGSTTCCCCCCTTSCSBCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcEEEEEeeecccccCCHHHHh-----CccccccccccccccCCCCCCCCCcccCCCCcccccc
Confidence 99999999999999999999999999999998765321 11222110 00000 0
Q ss_pred ----------CCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 374 ----------LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 374 ----------~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
....+++|+.+|+|+..+.+++.+|++ ++|||||+|++..+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgfr~d~~~~~ 304 (572)
T d1gjwa2 254 YNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNILE-LIVKEFGIITPPGF 304 (572)
T ss_dssp HTSHHHHHHHTTBCCCHHHHCHHHHHHHHTCSSCHHH-HHHHHHSEECCCBC
T ss_pred cCCceeeeeccccCCCccccCHHHHHHHHHHhhhHHh-cccceeeccccccc
Confidence 011245677899999999999999986 79999999998654
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Probab=99.97 E-value=1e-32 Score=323.49 Aligned_cols=249 Identities=16% Similarity=0.199 Sum_probs=152.7
Q ss_pred ccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccC------------------------cCCC--C-----
Q psy9001 1023 CHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL------------------------NEFD--G----- 1071 (1351)
Q Consensus 1023 ~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l------------------------~~~d--g----- 1071 (1351)
+.|+|+|||++|||+||++||++||+||||||+|||+..+.... ..++ +
T Consensus 69 ~~vd~~~Gt~~df~~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (394)
T d2d3na2 69 GTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTH 148 (394)
T ss_dssp TBSSBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSS
T ss_pred CCcCCCCCCHHHHHHHHHHHHHCCCEEEEEEecccccCccccccccccccCcccccccccccccccccccccCccccCCC
Confidence 46999999999999999999999999999999999986531100 0000 0
Q ss_pred --CCCccccCC-----C-----------CCCCCCC--------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCe
Q psy9001 1072 --TQACFFHDG-----P-----------RGTHPLW--------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDG 1119 (1351)
Q Consensus 1072 --~~~~yf~~~-----~-----------~g~~~~w--------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDG 1119 (1351)
....|++.. . .+....| +..+||++||+||++|+++++||++++||||
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~~~~~~~~w~~~~giDG 228 (394)
T d2d3na2 149 SSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDG 228 (394)
T ss_dssp CCCCBCGGGEEEESCCTTTCCSSCEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCSE
T ss_pred CccccccccCCCcccccccCCCCCcceecCCCCccccccccccccccccCCcccccCCHHHHHHHHHhhhhhhcccCcce
Confidence 000111100 0 0001111 2347899999999999999999999999999
Q ss_pred EEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHh-hCCCeEEEEccCCCCCCcccccccCCcccc
Q psy9001 1120 FRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD-KYPEIITIAEDVSGMPASCRPVTEGGTGFD 1198 (1351)
Q Consensus 1120 FRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~-~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFd 1198 (1351)
||||+|.++ +..||+++.+.+++ ..|+++++||.|.+.+.....+...+.+.+
T Consensus 229 fR~D~a~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~ 282 (394)
T d2d3na2 229 FRIDAVKHI--------------------------KYSFTRDWINHVRSATGKNMFAVAEFWKNDLGAIENYLQKTNWNH 282 (394)
T ss_dssp EEETTGGGS--------------------------CHHHHHHHHHHHHHHHTCCCEEEECCCCSCHHHHHHHHHHTTTCS
T ss_pred EEecccccC--------------------------ChHHHHHHHHHHHHhcCCceeecccccccccccccchhccccccc
Confidence 999999988 45677787777764 568999999999766555444322111100
Q ss_pred cccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeeccc
Q psy9001 1199 YRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLN 1278 (1351)
Q Consensus 1199 y~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~ 1278 (1351)
...+|+.. ..++.+++.. +...+.. .. ........|.+. ++|++
T Consensus 283 ---------~~~df~~~-----~~l~~~~~~~-----~~~~l~~-----~~-------~~~~~~~~~~~~-----v~fl~ 326 (394)
T d2d3na2 283 ---------SVFDVPLH-----YNLYNASKSG-----GNYDMRN-----IF-------NGTVVQRHPSHA-----VTFVD 326 (394)
T ss_dssp ---------EEECHHHH-----HHHHHHHHTT-----TCSCGGG-----TT-------TTCHHHHCGGGE-----EECSC
T ss_pred ---------eeehHHHH-----HHHHHHHhcC-----cchhHHH-----HH-------hccccccCHhHe-----eEeCc
Confidence 01122221 2334444211 0001100 00 000011122222 89999
Q ss_pred CCCCCcCCcccccccCCHHHHHHHHHHHHc-cCCccEEEee-cccCCCCccceeeccCC
Q psy9001 1279 NVREERNNENNMKRYIQTESNMNGFGIQTL-PTQSPLYLVA-KIEKPCSTREVVKAPLP 1335 (1351)
Q Consensus 1279 nHD~~rn~~~r~~~~~~~~~~r~A~alllt-spGiP~If~g-~~~~~~~~~~~~~~p~~ 1335 (1351)
|||+.|... ..........++|++++|| +|||||||+| |+...+...+.++.+++
T Consensus 327 NHD~~r~~~--~~~~~~~~~~~la~a~~l~~~pGiP~iyyGdE~G~~~~~~p~~r~~~~ 383 (394)
T d2d3na2 327 NHDSQPEEA--LESFVEEWFKPLAYALTLTREQGYPSVFYGDYYGIPTHGVPAMRSKID 383 (394)
T ss_dssp CTTTSTTST--TCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHHH
T ss_pred CCcCccccc--cccCccHHHHHHHHHHHHHcCCCeEEEEhhHhcCCCCCCCcchHHHHH
Confidence 999877521 1122222334566666555 6999999999 89888887776665553
|
| >d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.97 E-value=9.5e-33 Score=319.90 Aligned_cols=241 Identities=14% Similarity=0.142 Sum_probs=154.8
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCC----
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW---- 1088 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w---- 1088 (1351)
.+||| ++||+.++|+|||++|||+||++||++||+||||+|+||++.++......... ...||+.... ..+|
T Consensus 55 ~y~gY~~~dy~~vd~~~Gt~~df~~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~ 131 (344)
T d1ua7a2 55 WYWLYQPTSYQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKS-IPNWTHGNTQ--IKNWSDRW 131 (344)
T ss_dssp GGGGGCEEEEEEEETTTEEHHHHHHHHHHHHTTTCEEEEEECCSBCCSCTTTSCHHHHT-STTCEEECCB--CCCTTCHH
T ss_pred CccccccccCCCCCCCCCCHHHHHHHHHHhcccceeEeeccceeeecCCCchhhccccC-CcccccCCCC--CCCCCCCc
Confidence 47899 99999999999999999999999999999999999999999987432221111 1234442221 1222
Q ss_pred --------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHH
Q psy9001 1089 --------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLM 1160 (1351)
Q Consensus 1089 --------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~ 1160 (1351)
+..|||++||+||++|+++++||++ +||||||||+|++|... ....++.
T Consensus 132 ~~~~~~~~~l~Dln~~np~Vr~~l~~~~~~w~~-~giDGfR~Daakhv~~~----------------------~~~~~~~ 188 (344)
T d1ua7a2 132 DVTQNSLLGLYDWNTQNTQVQSYLKRFLERALN-DGADGFRFDAAKHIELP----------------------DDGSYGS 188 (344)
T ss_dssp HHHHSBBTTBCEECTTSHHHHHHHHHHHHHHHH-TTCCEEEETTGGGSCCT----------------------TSGGGCC
T ss_pred CcccCccccCCccccCChHHHHHHHHHHHHHHh-cCCCeEEEeeeeccCch----------------------hhHHHHH
Confidence 3458999999999999999999996 79999999999988211 1122334
Q ss_pred HHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCcccc
Q psy9001 1161 VANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRL 1240 (1351)
Q Consensus 1161 ~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~ 1240 (1351)
+++..+++..| .+++||.|.+.+.....+..-+... .+ .+...+++++.+... ....+
T Consensus 189 ~~~~~~~~~~~-~~~~gE~~~~~~~~~~~~~~~~~~~-------------~~-----~f~~~l~~~~~~~~~---~~~~~ 246 (344)
T d1ua7a2 189 QFWPNITNTSA-EFQYGEILQDSASRDAAYANYMDVT-------------AS-----NYGHSIRSALKNRNL---GVSNI 246 (344)
T ss_dssp SHHHHHTCSSC-SEEEECCCCSTTCCHHHHHTTSEEE-------------CH-----HHHHHHHHHHHHTCC---CHHHH
T ss_pred HHHHHHHhcCC-ceEEEEEeeccchhhhhhccCCccc-------------cc-----cccchHHHHHhcCCc---chhhH
Confidence 55566665544 5789999877665543322111000 01 112334555522110 00000
Q ss_pred CCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccC-CccEEEee-
Q psy9001 1241 DPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPT-QSPLYLVA- 1318 (1351)
Q Consensus 1241 ~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltsp-GiP~If~g- 1318 (1351)
. .+.. ...+.+ +++|++|||+.|+.. +..........|+|++++|+++ |+||||+|
T Consensus 247 ~----------~~~~------~~~~~~-----~v~f~~NHD~~r~~~-~~~~~~~~~~~~la~a~ll~~~~G~P~iY~G~ 304 (344)
T d1ua7a2 247 S----------HYAS------DVSADK-----LVTWVESHDTYANDD-EESTWMSDDDIRLGWAVIASRSGSTPLFFSRP 304 (344)
T ss_dssp S----------SCSS------SSCGGG-----EEECSSCHHHHHSTT-CSSTTCCHHHHHHHHHHHHTSSSSEEEEECCC
T ss_pred H----------HHHh------cCCHhh-----hchHhhcCCCCCCcc-cccccCCHHHHHHHHHHHHHhCCCeEEEEech
Confidence 0 0000 001112 289999999876532 3333445677889999899877 99999999
Q ss_pred cccCCC
Q psy9001 1319 KIEKPC 1324 (1351)
Q Consensus 1319 ~~~~~~ 1324 (1351)
|+...+
T Consensus 305 E~G~~~ 310 (344)
T d1ua7a2 305 EGGGNG 310 (344)
T ss_dssp TTCBTT
T ss_pred hccCCC
Confidence 444433
|
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Probab=99.97 E-value=8.7e-32 Score=307.12 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=91.3
Q ss_pred CCCCcccccc-ccccccccC-CCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcC---CCCCCC-ccccC---
Q psy9001 1009 RFGTPEQLKY-LVDECHKAG-LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE---FDGTQA-CFFHD--- 1079 (1351)
Q Consensus 1009 ~~~sp~~hgY-~~Dy~~idp-~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~---~dg~~~-~yf~~--- 1079 (1351)
++.++++||| +.||++|+| +|||++|||+||++||++||+||||+|+||++..+...... +.+... .++..
T Consensus 43 i~~~~~~~gY~~~d~~~id~~~~G~~~~f~~lv~~~H~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (347)
T d1ht6a2 43 PSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPH 122 (347)
T ss_dssp CSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCSEECTTSCEEECCCSSSSSTTCCCGG
T ss_pred CCcCCCCCCCCccCcCcCCcccCCCHHHHHHHHHHHhhcceEEeeeccccccCCCCcccccccccccCCCCCCCcCcCcc
Confidence 3445678999 999999998 79999999999999999999999999999999987432111 111111 11110
Q ss_pred ----------C-CCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccc
Q psy9001 1080 ----------G-PRGTHP---LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1080 ----------~-~~g~~~---~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m 1128 (1351)
. ...... ..+.++||++|++||++|++++++|++++||||||+|++.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~n~~v~~~l~~~~~~wi~~~gvDGfR~D~~~~~ 185 (347)
T d1ht6a2 123 MICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDFARGY 185 (347)
T ss_dssp GBCTTCTTTCCSCSCCCSSCCCTTSCBBCTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS
T ss_pred ccCCCcccccccccccccccccCCCCcccccchhhhhhhhhhhhhhcccCCcceEEEechhhc
Confidence 0 000111 113568999999999999999999999999999999999977
|
| >d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Probab=99.97 E-value=1.7e-31 Score=328.06 Aligned_cols=164 Identities=16% Similarity=0.185 Sum_probs=120.3
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCC---Ccccc-CCC-------
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ---ACFFH-DGP------- 1081 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~---~~yf~-~~~------- 1081 (1351)
++||| ++||++|||+|||++|||+||++||++||+||||+|+||||..|........+.. .+||. .+.
T Consensus 143 sd~GY~v~dy~~Vdp~lGt~edl~~Lv~~aH~rGI~VilD~V~NHts~~h~w~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 222 (554)
T d1g5aa2 143 SDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYD 222 (554)
T ss_dssp STTTTSCSCSSSBCTTTCCHHHHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCGGGTTSBCEESSSHHHHHHT
T ss_pred CCCCcCcccCCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECcCCCCCCccchhhhhccCCccccceEEcCCCCCCcccc
Confidence 46899 9999999999999999999999999999999999999999998743211111111 11111 100
Q ss_pred -----------CCCCC-----CC-------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCC
Q psy9001 1082 -----------RGTHP-----LW-------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEG 1138 (1351)
Q Consensus 1082 -----------~g~~~-----~w-------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~ 1138 (1351)
.+... .| +..+||++||+|+++|+++++||++ +||||||+|++.++.+.....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~dln~~np~V~~~~~~~~~~w~~-~gvDGfRlDa~~~~~~~~~~~--- 298 (554)
T d1g5aa2 223 RTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPWVFRAMAGEMLFLAN-LGVDILRMDAVAFIWKQMGTS--- 298 (554)
T ss_dssp TTCCCSSTTTCSTTEEECTTSCEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHT-TTCSEEEETTGGGSCCCTTSC---
T ss_pred CCCcccCCCCCCcceeecCCCceeecccCCcccccccCCHHHHHHHHhhhhhhhh-ccccccccccchhhccccccc---
Confidence 00000 00 1237999999999999999999995 799999999999884321110
Q ss_pred CCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccc
Q psy9001 1139 FSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVT 1191 (1351)
Q Consensus 1139 ~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~ 1191 (1351)
.....+...++++++..++..+|+++++||.+.....+..++.
T Consensus 299 ----------~~n~p~~~~~~~~~~~~~~~~~p~~~l~aE~~~~~~~~~~y~g 341 (554)
T d1g5aa2 299 ----------CENLPQAHALIRAFNAVMRIAAPAVFFKSEAIVHPDQVVQYIG 341 (554)
T ss_dssp ----------SSSCHHHHHHHHHHHHHHHHHCTTCEEEECCCSCHHHHGGGBS
T ss_pred ----------cccCchhhHHHHHHHHHHhhhCCCceeeccccCCHHHHHHHhC
Confidence 0123567889999999999999999999998865555555443
|
| >d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Probab=99.97 E-value=5.1e-31 Score=323.71 Aligned_cols=200 Identities=17% Similarity=0.211 Sum_probs=153.3
Q ss_pred CCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccC
Q psy9001 176 PDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 255 (1351)
Q Consensus 176 ~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~ 255 (1351)
.+.+++|.++++.|. |||+||++| |||||+||||+ |||||||+ + |..
T Consensus 95 ~~~~~~~~~y~~~fg-----GDl~Gi~~k-LdYLk~LGVt~----I~L~Pi~~--------------------~--p~~- 141 (554)
T d1g5aa2 95 SNKQVGGVCYVDLFA-----GDLKGLKDK-IPYFQELGLTY----LHLMPLFK--------------------C--PEG- 141 (554)
T ss_dssp CTTCCEEEECHHHHH-----SSHHHHHTT-HHHHHHHTCSE----EEECCCBC--------------------C--CSS-
T ss_pred CcCceeEEEeccccC-----cCHHHHHHh-hHHHHHcCCCE----EEECCCCC--------------------C--CCC-
Confidence 468899999998884 899999999 99999999999 99999553 2 211
Q ss_pred CCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9001 256 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 335 (1351)
Q Consensus 256 s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~ 335 (1351)
..+|||+++||+ +++ |+|||++|||+||++||++||+
T Consensus 142 ---~sd~GY~v~dy~---------------------~Vd-------------------p~lGt~edl~~Lv~~aH~rGI~ 178 (554)
T d1g5aa2 142 ---KSDGGYAVSSYR---------------------DVN-------------------PALGTIGDLREVIAALHEAGIS 178 (554)
T ss_dssp ---CSTTTTSCSCSS---------------------SBC-------------------TTTCCHHHHHHHHHHHHHTTCE
T ss_pred ---CCCCCcCcccCC---------------------CCC-------------------cccCCHHHHHHHHHHHHHCCCE
Confidence 246999999999 676 9999999999999999999999
Q ss_pred EEEEeeccccccCCcCCcccCCCCC---CcCccc-------------------CCCCCC-----CCC-------CCccCC
Q psy9001 336 VLLDVVHSHASKNVLDGLNEFDGTQ---ACFFHD-------------------GPRGTH-----PLW-------DSRLFN 381 (1351)
Q Consensus 336 VILDvV~NH~~~~~~~~~~~f~g~~---~~yy~~-------------------~~~~~~-----~~w-------~~~~ln 381 (1351)
||||+|+|||+.+++|+.....+.. ..||.. ...+.. ..| ...+||
T Consensus 179 VilD~V~NHts~~h~w~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~dln 258 (554)
T d1g5aa2 179 AVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLN 258 (554)
T ss_dssp EEEEECCSEEETTSHHHHHHHTTCGGGTTSBCEESSSHHHHHHTTTCCCSSTTTCSTTEEECTTSCEEECSSSTTEEEBC
T ss_pred EEEEECcCCCCCCccchhhhhccCCccccceEEcCCCCCCccccCCCcccCCCCCCcceeecCCCceeecccCCcccccc
Confidence 9999999999998866532222211 111110 000000 000 125799
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccC-chHHHHHHHHHHHHHhhCCCe
Q psy9001 382 YSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDKYPEI 460 (1351)
Q Consensus 382 ~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~f~~~~~~~v~~~~P~~ 460 (1351)
+.||+|+++|++++++|++ +||||||+|++..+.... + ....+ .+...+++.+++.++...|++
T Consensus 259 ~~np~V~~~~~~~~~~w~~-~gvDGfRlDa~~~~~~~~-----~---------~~~~n~p~~~~~~~~~~~~~~~~~p~~ 323 (554)
T d1g5aa2 259 YSNPWVFRAMAGEMLFLAN-LGVDILRMDAVAFIWKQM-----G---------TSCENLPQAHALIRAFNAVMRIAAPAV 323 (554)
T ss_dssp TTSHHHHHHHHHHHHHHHT-TTCSEEEETTGGGSCCCT-----T---------SCSSSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred cCCHHHHHHHHhhhhhhhh-ccccccccccchhhcccc-----c---------cccccCchhhHHHHHHHHHHhhhCCCc
Confidence 9999999999999999996 899999999999872210 0 00112 346789999999999999999
Q ss_pred EEEEEc
Q psy9001 461 ITIAED 466 (1351)
Q Consensus 461 ~~iaE~ 466 (1351)
+++||.
T Consensus 324 ~l~aE~ 329 (554)
T d1g5aa2 324 FFKSEA 329 (554)
T ss_dssp EEEECC
T ss_pred eeeccc
Confidence 999995
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Probab=99.97 E-value=4.8e-31 Score=309.68 Aligned_cols=140 Identities=21% Similarity=0.256 Sum_probs=102.0
Q ss_pred ccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccC--------------------------cCCCCCC---
Q psy9001 1023 CHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL--------------------------NEFDGTQ--- 1073 (1351)
Q Consensus 1023 ~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l--------------------------~~~dg~~--- 1073 (1351)
..|||+|||.+|||+||++||++||+||||+|+|||+..+.... ..+.+..
T Consensus 69 ~~vd~~~Gt~~df~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (393)
T d1e43a2 69 GTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTY 148 (393)
T ss_dssp TBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSS
T ss_pred CccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccCCCccccccccccCccccccccccccccccccccccCCCCCCC
Confidence 46999999999999999999999999999999999998652100 0000000
Q ss_pred C----cccc-----------------CCCCCCCCCC------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeE
Q psy9001 1074 A----CFFH-----------------DGPRGTHPLW------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGF 1120 (1351)
Q Consensus 1074 ~----~yf~-----------------~~~~g~~~~w------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGF 1120 (1351)
. .+++ ....+....| +..+||++||+|+++|++++++|++++|||||
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~np~v~~~~~~~~~~w~~~~GiDGf 228 (393)
T d1e43a2 149 SDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGF 228 (393)
T ss_dssp CCCCBCGGGEEEESCBTTTTBCCEEEECSSSCCCCSSSCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred cccccccccCCCCCccccCCcCCcccccCcccccccccccccceeccccccccccCChhhhHHHHHHHHhhhhhcCcceE
Confidence 0 0000 0000000111 23378999999999999999999999999999
Q ss_pred EEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHh-hCCCeEEEEccCCCCCCccc
Q psy9001 1121 RFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD-KYPEIITIAEDVSGMPASCR 1188 (1351)
Q Consensus 1121 RfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~-~~Pd~ilIaE~~~~~p~~~~ 1188 (1351)
|+|++.++ ...||+++.+.+++ ..|+++++||.|...+....
T Consensus 229 R~Da~~~~--------------------------~~~f~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~ 271 (393)
T d1e43a2 229 RIDAAKHI--------------------------KFSFLRDWVQAVRQATGKEMFTVAEYWQNNAGKLE 271 (393)
T ss_dssp EETTGGGS--------------------------CHHHHHHHHHHHHHHHCSCCEEEECCCCSCHHHHH
T ss_pred EeeccccC--------------------------CHHHHHHHHHHHHHhcCcceEEeeeecCCcHHhhh
Confidence 99999988 45677887777765 57899999999876654443
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.97 E-value=2e-31 Score=312.57 Aligned_cols=138 Identities=23% Similarity=0.324 Sum_probs=97.1
Q ss_pred cccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCc-cccCc-------------------------CCCC------
Q psy9001 1024 HKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV-LDGLN-------------------------EFDG------ 1071 (1351)
Q Consensus 1024 ~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~-~~~l~-------------------------~~dg------ 1071 (1351)
+|+|+|||.+|||+||++||++||+||||||+|||+... ..++. .+.+
T Consensus 73 ~vd~~~Gt~~df~~LV~~aH~~GIkVIlDvV~NHt~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (393)
T d1hvxa2 73 AVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYS 152 (393)
T ss_dssp BSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSC
T ss_pred CcCCCCCCHHHHHHHHHHHHHCCCEEEEEEecccccccCCccceeecccCccccccccCCCcccccccccCCCCCCCCCC
Confidence 699999999999999999999999999999999997521 01000 0000
Q ss_pred -CCCccccCC---------------CCCCCCCC--------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEE
Q psy9001 1072 -TQACFFHDG---------------PRGTHPLW--------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFR 1121 (1351)
Q Consensus 1072 -~~~~yf~~~---------------~~g~~~~w--------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFR 1121 (1351)
....|++.+ ..+....| ...+||++||+|+++|++++++|++++||||||
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~giDGfR 232 (393)
T d1hvxa2 153 SFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFR 232 (393)
T ss_dssp CCCBCGGGEEEEEEETTTTEEEEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred CcccccccCCCCcccccCCcCccccccCCcCccccccccccceeeccccceeccCChHHHHHHHHHHHHHHHhhCCceee
Confidence 000111100 00111111 124799999999999999999999999999999
Q ss_pred EcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHh-hCCCeEEEEccCCCCCCcc
Q psy9001 1122 FDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD-KYPEIITIAEDVSGMPASC 1187 (1351)
Q Consensus 1122 fD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~-~~Pd~ilIaE~~~~~p~~~ 1187 (1351)
||+|.++ ...||+++.+.+++ ..++++++||.|.+.+...
T Consensus 233 ~D~a~~i--------------------------~~~f~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~ 273 (393)
T d1hvxa2 233 LDAVKHI--------------------------KFSFFPDWLSYVRSQTGKPLFTVGEYWSYDINKL 273 (393)
T ss_dssp ETTGGGS--------------------------CTTHHHHHHHHHHHHHCCCCEEEECCCCSCHHHH
T ss_pred eeccccC--------------------------ChhHHHHHHHHHHHhcCCcceeeeeccCccHHHH
Confidence 9999988 23456666666654 4568899999987655443
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Probab=99.97 E-value=2.6e-30 Score=301.64 Aligned_cols=240 Identities=13% Similarity=0.068 Sum_probs=151.1
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccC--cCCCCCCCccc-------cCCCCC
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL--NEFDGTQACFF-------HDGPRG 1083 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l--~~~dg~~~~yf-------~~~~~g 1083 (1351)
.+++| ++|| +|+|+|||++|||+||++||++||+||||+|+||++..+..+. ...+.....+. ......
T Consensus 56 ~~~~Y~~~dY-~id~~~Gt~~df~~LV~~aH~~GI~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (378)
T d1jaea2 56 WWERYQPVSY-IINTRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDFHSPC 134 (378)
T ss_dssp GGGGGSBCCS-CSEETTEEHHHHHHHHHHHHHTTCEEEEEECCSBCCSSCEEBTTSCEEBTTTTBBTTTTBCGGGBCCCC
T ss_pred CccccCCccc-eeCCCCCCHHHHHHHHHHHHhcCceeeeeecccccccccCCCccccccCCCcccCcCCCCCccccCCCC
Confidence 46889 6775 7999999999999999999999999999999999998763211 11111100000 001111
Q ss_pred CCCCC------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcC
Q psy9001 1084 THPLW------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV 1151 (1351)
Q Consensus 1084 ~~~~w------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~ 1151 (1351)
...+| +.++||+++|+||++|+++++||+ ++||||||||+|++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~l~Dln~~np~V~~~l~~~~~~w~-e~gvDGfR~Daa~~i----------------------- 190 (378)
T d1jaea2 135 EVNNYQDADNVRNCELVGLRDLNQGSDYVRGVLIDYMNHMI-DLGVAGFRVDAAKHM----------------------- 190 (378)
T ss_dssp BCCCTTCHHHHHHSBBTTBCBBCTTSHHHHHHHHHHHHHHH-HTTCCEEEETTGGGS-----------------------
T ss_pred CcCCCCCccccccccccccCccccCCHHHHHHHHHHHHHHH-HhCCCceeeeeeccc-----------------------
Confidence 11222 235899999999999999999999 599999999999988
Q ss_pred ChhHHHHHHHHHHHHHhhCC--------CeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchh
Q psy9001 1152 DTDALIYLMVANKFLHDKYP--------EIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKY 1223 (1351)
Q Consensus 1152 d~~~~~fl~~~~~~l~~~~P--------d~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~ 1223 (1351)
...+++.+...++...| +.++++|.+.+.+.........+. + . ...|+.. ..+
T Consensus 191 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~--~----~-----~~~~~~~-----~~~ 251 (378)
T d1jaea2 191 ---SPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGGEAISKNEYTGF--G----C-----VLEFQFG-----VSL 251 (378)
T ss_dssp ---CHHHHHHHHHTCCCCCGGGTCCTTCCCEEEEECCCCSSSSCCGGGTTTS--S----E-----EECHHHH-----HHH
T ss_pred ---CHHHHHHHHHhhhhhccccccccccccceeeehhccccccccchhcccc--c----h-----hcchhhh-----hhh
Confidence 34566666666655433 578999987655444333222111 0 0 1112111 222
Q ss_pred HhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHH
Q psy9001 1224 KVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGF 1303 (1351)
Q Consensus 1224 rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~ 1303 (1351)
+.++... ..+..+.. .........+.+ +++|++|||+.|..+.........++.|+|+
T Consensus 252 ~~~~~~~----~~~~~l~~-------------~~~~~~~~~~~~-----~v~Fl~NHD~~R~~~~~~~~~~~~~~~~lA~ 309 (378)
T d1jaea2 252 GNAFQGG----NQLKNLAN-------------WGPEWGLLEGLD-----AVVFVDNHDNQRTGGSQILTYKNPKPYKMAI 309 (378)
T ss_dssp HHHHTTT----SCGGGGGG-------------CSGGGTCCCGGG-----EEECSCCTTHHHHSCTTCCCTTSHHHHHHHH
T ss_pred hhhhccC----ccHHHHHH-------------HhhhhccCCccc-----eeEeeccCCCCCcCCCcccccCCHHHHHHHH
Confidence 3333111 00000000 000000111222 2899999999886544444445668899999
Q ss_pred HHHHccC-CccEEEeec
Q psy9001 1304 GIQTLPT-QSPLYLVAK 1319 (1351)
Q Consensus 1304 allltsp-GiP~If~g~ 1319 (1351)
+++||.| |+|+||+|.
T Consensus 310 af~lt~p~G~P~iy~g~ 326 (378)
T d1jaea2 310 AFMLAHPYGTTRIMSSF 326 (378)
T ss_dssp HHHHHSCSSEEEEEECB
T ss_pred HHHHHcCCCEEEEEecc
Confidence 9999999 999999994
|
| >d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.96 E-value=4e-30 Score=297.72 Aligned_cols=199 Identities=16% Similarity=0.130 Sum_probs=144.5
Q ss_pred CCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCC
Q psy9001 177 DNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 256 (1351)
Q Consensus 177 ~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s 256 (1351)
.+-+|||.. .++|++|+++ |||||+||||+ |||||||+.. . .. ...++
T Consensus 4 ~~~~i~~~f---------~~~f~~i~~~-ldyl~~lGv~a----Iwl~Pi~~~~------------~----~~--~~~~~ 51 (344)
T d1ua7a2 4 KSGTILHAW---------NWSFNTLKHN-MKDIHDAGYTA----IQTSPINQVK------------E----GN--QGDKS 51 (344)
T ss_dssp TTSCEEECT---------TBCHHHHHHT-HHHHHHTTCSE----EEECCCEEEC------------C----TG--GGCCB
T ss_pred CCCeEEEec---------CCcHHHHHHh-HHHHHHcCCCE----EEeCCCeeCC------------C----cC--CCCCC
Confidence 445787744 3689999999 99999999999 9999966521 0 00 11112
Q ss_pred CCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEE
Q psy9001 257 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 336 (1351)
Q Consensus 257 ~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~V 336 (1351)
....||||++.+|+ +++ ++||+++|||+||++||++||+|
T Consensus 52 ~~~~y~gY~~~dy~---------------------~vd-------------------~~~Gt~~df~~LV~~aH~~Gi~V 91 (344)
T d1ua7a2 52 MSNWYWLYQPTSYQ---------------------IGN-------------------RYLGTEQEFKEMCAAAEEYGIKV 91 (344)
T ss_dssp GGGGGGGGCEEEEE---------------------EEE-------------------TTTEEHHHHHHHHHHHHTTTCEE
T ss_pred CCCCccccccccCC---------------------CCC-------------------CCCCCHHHHHHHHHHhcccceeE
Confidence 23457999999999 777 99999999999999999999999
Q ss_pred EEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCC------------CCccCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy9001 337 LLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW------------DSRLFNYSEIEVLRFLLSNLRWYLDEYQF 404 (1351)
Q Consensus 337 ILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w------------~~~~ln~~~p~v~~~l~~~l~~W~~e~~v 404 (1351)
|||+|+||++.++.+........ +.||+... ...+| +.++||+.+|+||++|++++++|++ +||
T Consensus 92 ilD~V~NH~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~l~Dln~~np~Vr~~l~~~~~~w~~-~gi 167 (344)
T d1ua7a2 92 IVDAVINHTTFDYAAISNEVKSI-PNWTHGNT--QIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLERALN-DGA 167 (344)
T ss_dssp EEEECCSBCCSCTTTSCHHHHTS-TTCEEECC--BCCCTTCHHHHHHSBBTTBCEECTTSHHHHHHHHHHHHHHHH-TTC
T ss_pred eeccceeeecCCCchhhccccCC-cccccCCC--CCCCCCCCcCcccCccccCCccccCChHHHHHHHHHHHHHHh-cCC
Confidence 99999999999876654332222 22333221 11222 2357999999999999999999996 899
Q ss_pred CccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCcc
Q psy9001 405 DGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASC 474 (1351)
Q Consensus 405 DGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~~ 474 (1351)
||||||+|.+|.. .. ...|+++++..+++..| .+++||.|.+.+...
T Consensus 168 DGfR~Daakhv~~-------~~---------------~~~~~~~~~~~~~~~~~-~~~~gE~~~~~~~~~ 214 (344)
T d1ua7a2 168 DGFRFDAAKHIEL-------PD---------------DGSYGSQFWPNITNTSA-EFQYGEILQDSASRD 214 (344)
T ss_dssp CEEEETTGGGSCC-------TT---------------SGGGCCSHHHHHTCSSC-SEEEECCCCSTTCCH
T ss_pred CeEEEeeeeccCc-------hh---------------hHHHHHHHHHHHHhcCC-ceEEEEEeeccchhh
Confidence 9999999998821 10 11234455666666554 578999887766443
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=99.96 E-value=3.4e-29 Score=289.53 Aligned_cols=239 Identities=13% Similarity=0.086 Sum_probs=146.3
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcC-------CCCCCCccccCCCCCCC
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE-------FDGTQACFFHDGPRGTH 1085 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~-------~dg~~~~yf~~~~~g~~ 1085 (1351)
-+||| ++|| +|+|+|||++|||+||++||++||+||||||+||++.++...... ........|+.......
T Consensus 46 ~y~gY~~~dy-~vd~~~Gt~~dfk~LV~~aH~~GI~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (354)
T d1g94a2 46 WWTRYQPVSY-ELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHESCTINN 124 (354)
T ss_dssp GGGGGSBSCS-CSCBTTBCHHHHHHHHHHHHHTTCEEEEEEECSEECSSCEEBTTSCEEBTTBCSSCCGGGBCCCCBCCT
T ss_pred CcccCCCCcc-eeCCCCCCHHHHHHHHHHHhccCceeEEEeeccccccccCCCcccccccccCCCcCCccccccCCCCCC
Confidence 37999 8885 799999999999999999999999999999999999887322110 00001111221111111
Q ss_pred CC------------C-CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCC
Q psy9001 1086 PL------------W-DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 1152 (1351)
Q Consensus 1086 ~~------------w-~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d 1152 (1351)
.. + +..+||++||+||++|+++++||++ +||||||+|++.++
T Consensus 125 ~~~~~~~~~~~~~~~~~l~dln~~n~~Vr~~l~d~~~~~~e-~gvdGfR~Da~~~~------------------------ 179 (354)
T d1g94a2 125 SDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYINDLQA-IGVKGFRFDASKHV------------------------ 179 (354)
T ss_dssp THHHHCHHHHHHSBSTTCEEBCTTSHHHHHHHHHHHHHHHH-HTCCEEEEETGGGS------------------------
T ss_pred ccccccccceeccccCCCCccccCCHHHHHHHHHHHHHhhh-hccchhhccchhhC------------------------
Confidence 10 1 2348999999999999999999985 89999999999988
Q ss_pred hhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCC
Q psy9001 1153 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCS 1232 (1351)
Q Consensus 1153 ~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~ 1232 (1351)
...+|+.+. .+..++..+++|.+...+..+......+.+. +.+++.. .....++...
T Consensus 180 --~~~~~~~~~---~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-----------~~~~~~~-----~~~~~~~~~~-- 236 (354)
T d1g94a2 180 --AASDIQSLM---AKVNGSPVVFQEVIDQGGEAVGASEYLSTGL-----------VTEFKYS-----TELGNTFRNG-- 236 (354)
T ss_dssp --CHHHHHHHH---HTSCSCCEEEECCCCSSCCSSCGGGGGGGSE-----------EECHHHH-----HHHHHHHHHS--
T ss_pred --CHHHHHHHH---hhhcccceeEEEEeccCcccccchhhcCCCc-----------ccchhhc-----chhhhHhhhh--
Confidence 234555444 4557788999999877665554332211110 0011100 1111111100
Q ss_pred CCCCccccCCCcccccccCCcccccCcccccc-CCCCccceeeecccCCCCCcCCccc--ccccCCHHHHHHHHHHHHcc
Q psy9001 1233 HFGGFNRLDPGTVYETYPEPWNNRRNSIKLYL-PTRTGIIDEVNLLNNVREERNNENN--MKRYIQTESNMNGFGIQTLP 1309 (1351)
Q Consensus 1233 ~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~-p~~~~~~~~vnfv~nHD~~rn~~~r--~~~~~~~~~~r~A~alllts 1309 (1351)
.+..+. . + .....+. +.+ +|+|++|||++|+.... .......++.++|.+++|+.
T Consensus 237 ---~~~~l~-----~-----~----~~~~~~~~~~~-----~v~Fl~NHD~~R~~~~~~~~~~~~~~~~~~lA~afil~~ 294 (354)
T d1g94a2 237 ---SLAWLS-----N-----F----GEGWGFMPSSS-----AVVFVDNHDNQRGHGGAGNVITFEDGRLYDLANVFMLAY 294 (354)
T ss_dssp ---CGGGGG-----G-----T----TGGGTCCCGGG-----EEECSCCTTGGGTSSCCTTSCCGGGTHHHHHHHHHHHHS
T ss_pred ---hHHHHH-----H-----H----hhhhccCCccc-----eEEeecccccccccccCcccccccchHHHHHHHHHHHHc
Confidence 000000 0 0 0000111 222 38999999998863211 11122346778899988887
Q ss_pred C-CccEEEee-cccCC
Q psy9001 1310 T-QSPLYLVA-KIEKP 1323 (1351)
Q Consensus 1310 p-GiP~If~g-~~~~~ 1323 (1351)
| |+||||+| |....
T Consensus 295 p~G~P~iyyG~ef~~~ 310 (354)
T d1g94a2 295 PYGYPKVMSSYDFHGD 310 (354)
T ss_dssp CSSEEEEEECBCCTTC
T ss_pred CCCEEEEEeecCcCCC
Confidence 7 99999999 54433
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=2.5e-30 Score=316.58 Aligned_cols=234 Identities=14% Similarity=0.051 Sum_probs=146.3
Q ss_pred eeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEEEec-CCCCCeeeeeeeeCCCCCCCCccccCC-CC-C
Q psy9001 811 SIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTE-PPVVGHAYEQRIWNPKPQDKHKWTSSK-PK-K 887 (1351)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~-~~~~~~~~d~~~~~p~~~~~~~w~~~~-p~-~ 887 (1351)
...+++.....++ .+..+ ..| ...+||||+++.. +...+.+.+... ..+..|.... .+ -
T Consensus 19 ~y~~~~~~~~~~~-------~~~~~-~~~-----~~~~DPya~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~w 80 (572)
T d1gjwa2 19 IYAVPKLWIPGFF-------KKFDE-KSG-----RCFVDPYELGAEITDWILNQSREWDY-----SQPLSFLKGEKTPDW 80 (572)
T ss_dssp CEEECGGGSCTTC-------CCCEE-ETT-----EEEECHHHHHHHHHHHHHTTCCSSCT-----TSCHHHHHTCCSGGG
T ss_pred EEEeCCCcCCccc-------ceecc-CCC-----eEEecCcccccccccccccccccccc-----ccccchhcCCCCCcc
Confidence 7888877654222 22222 244 3578999998753 222233333321 1233443322 11 1
Q ss_pred CCCceEEEeecCCcccCCC-------cccccccccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCccc
Q psy9001 888 PENLKIYESHVGICTQEQK-------CASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNW 960 (1351)
Q Consensus 888 p~d~iIYE~HV~~~s~~~~-------~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~ 960 (1351)
-+++||||+|||.|+.... .+++.+ +..-|||.++..+++||++||++.++|+ | .+.+
T Consensus 81 ~~~~viYei~v~~F~~~~~~g~~~~~~~~~~g--------~~~~Gd~~Gi~~kLdYLk~LGvtaI~L~-P------i~~~ 145 (572)
T d1gjwa2 81 IKRSVVYGSLPRTTAAYNHKGSGYYEENDVLG--------FREAGTFFKMMLLLPFVKSLGADAIYLL-P------VSRM 145 (572)
T ss_dssp GGGCCEEEECHHHHTCCCTTSSSCCCSBCTTS--------CBCSCCHHHHHHTHHHHHHHTCCEEEEC-C------CEEE
T ss_pred ccCcEEEEEechhhcCCCCCCCcccccCcccC--------ccCCCCHHHHHHhhHHHHHcCCCEEEeC-C------cccC
Confidence 2799999999999986433 233333 3346899999999999999998666655 1 0000
Q ss_pred ccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCC--------CCC
Q psy9001 961 NREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGL--------FGT 1031 (1351)
Q Consensus 961 ~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~--------yGt 1031 (1351)
++. . -....++|| +.||++++|+ |||
T Consensus 146 -------------------~~~------------------~--------~~~~~~~GY~~~dy~~~dp~~~~~~~~~~Gt 180 (572)
T d1gjwa2 146 -------------------SDL------------------F--------KKGDAPSPYSVKNPMELDERYHDPLLEPFKV 180 (572)
T ss_dssp -------------------CCS------------------S--------CSSSSCCTTSEEEEEEECGGGSCGGGTTSCH
T ss_pred -------------------ccc------------------c--------CCCCCCCCCCccCCCCCCcccccccccCCCC
Confidence 000 0 001135788 8889888875 799
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccC-----CCCCCCC--------------------
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHD-----GPRGTHP-------------------- 1086 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~-----~~~g~~~-------------------- 1086 (1351)
++|||+||++||++||+||||||+|||+.+|.. +.. .+.||.. ...+...
T Consensus 181 ~~dfk~lV~~~H~~GI~VIlDvV~NHts~~~~~-~~~----~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 255 (572)
T d1gjwa2 181 DEEFKAFVEACHILGIRVILDFIPRTAARDSDL-IRE----HPDWFYWIKVEELADYTPPRAEELPFKVPDEDELEIIYN 255 (572)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTEEETTCGG-GTT----CGGGSCCEEGGGSTTCCCCCCTTSCSBCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCcEEEEEeeecccccCCHH-HHh----CccccccccccccccCCCCCCCCCcccCCCCcccccccC
Confidence 999999999999999999999999999998732 211 1122210 0011000
Q ss_pred --------CCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccc
Q psy9001 1087 --------LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1087 --------~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m 1128 (1351)
..+..++|+.+|+|++.+.+++.+|++ ++|||||+|++..+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgfr~d~~~~~ 304 (572)
T d1gjwa2 256 KENVKRHLKKFTLPPNLIDPQKWEKIKREEGNILE-LIVKEFGIITPPGF 304 (572)
T ss_dssp SHHHHHHHTTBCCCHHHHCHHHHHHHHTCSSCHHH-HHHHHHSEECCCBC
T ss_pred CceeeeeccccCCCccccCHHHHHHHHHHhhhHHh-cccceeeccccccc
Confidence 011236777788888888888888875 58888888887543
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.96 E-value=3.5e-29 Score=294.28 Aligned_cols=241 Identities=14% Similarity=0.132 Sum_probs=152.2
Q ss_pred cccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCC-CC-------------C-cc
Q psy9001 1013 PEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG-TQ-------------A-CF 1076 (1351)
Q Consensus 1013 p~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg-~~-------------~-~y 1076 (1351)
+.+||| .+| |+|+|+|||++|||+||++||++||+||||||+||++.++......... .. . ..
T Consensus 57 ~~y~gY~~~d-Y~v~~~~Gt~~dfk~Lv~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (403)
T d1hx0a2 57 PWWERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWD 135 (403)
T ss_dssp CGGGGGSBSC-SCSCBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEEEETTCCCBSCBSSCCCBBGGGTBBTTTTBCGGG
T ss_pred CCceeecCCC-CccCCCCCCHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccCcccccccccCCCCCCCCcc
Confidence 457999 888 5899999999999999999999999999999999999876322111100 00 0 00
Q ss_pred ccCCC----CCCCCCCC------------CCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCC
Q psy9001 1077 FHDGP----RGTHPLWD------------SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFS 1140 (1351)
Q Consensus 1077 f~~~~----~g~~~~w~------------~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~ 1140 (1351)
|.... .+....|. ..+||++||+||++|+++++||++ +||||||+|++.++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pDLn~~np~Vr~~~~~~l~~~~~-~GvdGfR~Da~~~~------------ 202 (403)
T d1hx0a2 136 FNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLID-IGVAGFRIDASKHM------------ 202 (403)
T ss_dssp BCTTTCCSTTSBCCCTTCHHHHHHSBGGGEEEBCTTSHHHHHHHHHHHHHHHH-HTCCEEEETTGGGS------------
T ss_pred CCCCcccCCCCCccccCCccceeeccccccCcccCCCHHHHHHHHHHHHHHHH-cCCCcccccccccc------------
Confidence 11000 01111221 237999999999999999999995 79999999999988
Q ss_pred CCcccccCCcCChhHHHHHHHHHHHHHhhC-------CCeEEEEccCCCCCCcccccccCCccccccccccccccccccc
Q psy9001 1141 GHYDEYFGLNVDTDALIYLMVANKFLHDKY-------PEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFP 1213 (1351)
Q Consensus 1141 ~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~-------Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~ 1213 (1351)
...+++.+...++... ++.++++|.+...+....+....+.+. +.+|+
T Consensus 203 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~-----------~~df~ 257 (403)
T d1hx0a2 203 --------------WPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVIDLGGEAIKSSEYFGNGR-----------VTEFK 257 (403)
T ss_dssp --------------CHHHHHHHHTTCCCCCTTTSCTTCCCEEEECCCCCSSSSSCGGGGTTTSE-----------EECHH
T ss_pred --------------CHHHHHHHHHHHHhhCcccccccCCceEEEEEeccCcchhhcccccCCCc-----------ccccc
Confidence 3355666666655433 467899998877666665554333220 11122
Q ss_pred ccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccccCcccccc-CCCCccceeeecccCCCCCcCCcc---c
Q psy9001 1214 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYL-PTRTGIIDEVNLLNNVREERNNEN---N 1289 (1351)
Q Consensus 1214 ~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~-p~~~~~~~~vnfv~nHD~~rn~~~---r 1289 (1351)
. ...+++++.... ....+. .........+. |.+. |+|++|||++|.... .
T Consensus 258 ~-----~~~~~~~~~~~~---~~~~~~-------------~~~~~~~~~~~~~~~~-----v~Fl~NHD~~R~~~~~~~~ 311 (403)
T d1hx0a2 258 Y-----GAKLGTVVRKWS---GEKMSY-------------LKNWGEGWGFMPSDRA-----LVFVDNHDNQRGHGAGGSS 311 (403)
T ss_dssp H-----HHHHHHHHTTCT---TCCGGG-------------GGGTTGGGTCCCGGGE-----EECSCCTTGGGTCSSCGGG
T ss_pred c-----cchhhHHHhhcc---chhHHH-------------HHHhccccccCCccce-----EEecccCCCcccccCCCcc
Confidence 1 133444442110 000000 00000011111 2222 899999999886322 2
Q ss_pred ccccCCHHHHHHHHHHHHccC-CccEEEee
Q psy9001 1290 MKRYIQTESNMNGFGIQTLPT-QSPLYLVA 1318 (1351)
Q Consensus 1290 ~~~~~~~~~~r~A~allltsp-GiP~If~g 1318 (1351)
.......+.+++|.+++||.| |+|+||.|
T Consensus 312 ~~~~~~~~~~~~a~af~lt~p~G~P~iy~g 341 (403)
T d1hx0a2 312 ILTFWDARLYKIAVGFMLAHPYGFTRVMSS 341 (403)
T ss_dssp CCCGGGHHHHHHHHHHHHHSCSSEEEEEEC
T ss_pred ccccccHHHHHHHHHHHHHCCCCccceEee
Confidence 222234478899999999999 99999887
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=99.96 E-value=9.3e-29 Score=284.66 Aligned_cols=202 Identities=19% Similarity=0.162 Sum_probs=142.6
Q ss_pred CceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCC
Q psy9001 178 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 257 (1351)
Q Consensus 178 ~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~ 257 (1351)
+-||++.+-.........|+|++|+++ |||||+||||+ |||||+|+.. .. ...++.
T Consensus 16 ~~~~~~~f~w~~~~~~~~~~~~~i~~k-l~yl~~lGv~a----Iwl~P~~~~~----------------~~---~~~~~~ 71 (357)
T d1gcya2 16 DEIILQGFHWNVVREAPNDWYNILRQQ-AATIAADGFSA----IWMPVPWRDF----------------SS---WSDGSK 71 (357)
T ss_dssp CCCEEECCCTTHHHHSTTTHHHHHHHH-HHHHHHTTCSE----EEECCCSCCC----------------CC---BC---C
T ss_pred CEEEEeeeecCCCCCCCCcHHHHHHHH-HHHHHHcCCCE----EEeCcCeeCC----------------cc---CCCCCC
Confidence 446665432111222334679999999 99999999999 9999966521 00 111222
Q ss_pred CccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9001 258 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 337 (1351)
Q Consensus 258 ~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VI 337 (1351)
...+|||++.||. + ||+|||++|||+||++||++||+||
T Consensus 72 ~~~~hgY~~~dy~----------------------v-------------------d~~~Gt~~df~~LV~~aH~~GI~VI 110 (357)
T d1gcya2 72 SGGGEGYFWHDFN----------------------K-------------------NGRYGSDAQLRQAASALGGAGVKVL 110 (357)
T ss_dssp CBCCSSTTCSSSC----------------------S-------------------CSSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCcChhhcc----------------------c-------------------CccCCCHHHHHHHHHHHHhcCCeEE
Confidence 3456888888743 3 3999999999999999999999999
Q ss_pred EEeeccccccCCcCCcccCCCCCCcCcccCC-CC---------CCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Q psy9001 338 LDVVHSHASKNVLDGLNEFDGTQACFFHDGP-RG---------THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGF 407 (1351)
Q Consensus 338 LDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~-~~---------~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGf 407 (1351)
||+|+||++.++.+....+......|+.... .+ ....+..++||+.+|+|++++++++++|++++|||||
T Consensus 111 lD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~~~~~~~~~~~~~giDGf 190 (357)
T d1gcya2 111 YDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGF 190 (357)
T ss_dssp EEECCSBCCTTCSSCSCCCCSSSSCBGGGSCCCSSSCBTTBSSCCSTTSTTBBCTTSHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred EEEeccccCCCCCccccccccCCCccccccCCCCCCCCCCCccccccccccccCCCCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999876654433322222322111 00 0111224689999999999999999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCc
Q psy9001 408 RFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPAS 473 (1351)
Q Consensus 408 R~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~ 473 (1351)
|||+|.++ ...||+.. ++...|++.+++|.|...+..
T Consensus 191 R~Daa~~i--------------------------~~~~~~~~---~~~~~~~~~~~gE~~~~~~~~ 227 (357)
T d1gcya2 191 RFDFVRGY--------------------------APERVNSW---MTDSADNSFCVGELWKGPSEY 227 (357)
T ss_dssp EESCGGGS--------------------------CHHHHHHH---HHHHCTTSEEEECCCCCGGGS
T ss_pred EEeehhcC--------------------------CHHHHHHH---HhhcCCCceeeeeeccCccch
Confidence 99999987 12455443 566789999999988765443
|
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Probab=99.95 E-value=1.4e-28 Score=280.24 Aligned_cols=160 Identities=17% Similarity=0.174 Sum_probs=124.5
Q ss_pred EEEecCCcc---CCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCC
Q psy9001 182 YESHVGICT---QEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHD 258 (1351)
Q Consensus 182 YE~hvr~ft---~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~ 258 (1351)
||+-++.|. .....|+|++|++| |||||+||||+ |||||||+ . +
T Consensus 1 ~~~~~~~f~~~~~~~~~g~~~~i~~k-Ldyl~~lGv~~----i~L~Pi~~--------------------~--~------ 47 (347)
T d1ht6a2 1 HQVLFQGFNWESWKQSGGWYNMMMGK-VDDIAAAGVTH----VWLPPPSH--------------------S--V------ 47 (347)
T ss_dssp CCCEEECCCTTGGGCTTCHHHHHHTT-HHHHHHTTCCE----EEECCCSC--------------------B--S------
T ss_pred CeeEEeccccCcCCCCCCCHHHHHHh-HHHHHHcCCCE----EEECCCCc--------------------C--C------
Confidence 677777775 34567999999999 99999999999 99999553 2 1
Q ss_pred ccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCC-CCCCHHHHHHHHHHHHHcCCEEE
Q psy9001 259 QALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAG-LFGTPEQLKYLVDECHKAGLYVL 337 (1351)
Q Consensus 259 ~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~-~~G~~~efk~LV~~~H~~GI~VI 337 (1351)
.+|||++.||+ +++ | ++|++++|++||++||++||+||
T Consensus 48 -~~~gY~~~d~~---------------------~id-------------------~~~~G~~~~f~~lv~~~H~~gi~Vi 86 (347)
T d1ht6a2 48 -SNEGYMPGRLY---------------------DID-------------------ASKYGNAAELKSLIGALHGKGVQAI 86 (347)
T ss_dssp -STTSSSBCCTT---------------------CGG-------------------GCTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred -CCCCCCccCcC---------------------cCC-------------------cccCCCHHHHHHHHHHHhhcceEEe
Confidence 24999999999 665 5 79999999999999999999999
Q ss_pred EEeeccccccCCcCCc---ccCCCCCC-cCccc-------------CCCCCC----CCCCCccCCCCCHHHHHHHHHHHH
Q psy9001 338 LDVVHSHASKNVLDGL---NEFDGTQA-CFFHD-------------GPRGTH----PLWDSRLFNYSEIEVLRFLLSNLR 396 (1351)
Q Consensus 338 LDvV~NH~~~~~~~~~---~~f~g~~~-~yy~~-------------~~~~~~----~~w~~~~ln~~~p~v~~~l~~~l~ 396 (1351)
||+|+||++..+.+.. ..+.+... .|+.. .....+ ..++.++||+.+++||++|+++++
T Consensus 87 lD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~n~~v~~~l~~~~~ 166 (347)
T d1ht6a2 87 ADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLL 166 (347)
T ss_dssp EEECCSBCCCSEECTTSCEEECCCSSSSSTTCCCGGGBCTTCTTTCCSCSCCCSSCCCTTSCBBCTTCHHHHHHHHHHHH
T ss_pred eeccccccCCCCcccccccccccCCCCCCCcCcCccccCCCcccccccccccccccccCCCCcccccchhhhhhhhhhhh
Confidence 9999999998876542 12222211 11110 000111 111247899999999999999999
Q ss_pred HHHHHcCCCcccccccccc
Q psy9001 397 WYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 397 ~W~~e~~vDGfR~D~a~~~ 415 (1351)
+|++++||||||+|++.++
T Consensus 167 ~wi~~~gvDGfR~D~~~~~ 185 (347)
T d1ht6a2 167 WLKSDLGFDAWRLDFARGY 185 (347)
T ss_dssp HHHHHHCCCEEEETTGGGS
T ss_pred hhcccCCcceEEEechhhc
Confidence 9999999999999999877
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Probab=99.95 E-value=4.5e-28 Score=283.67 Aligned_cols=207 Identities=18% Similarity=0.227 Sum_probs=144.6
Q ss_pred CceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCC
Q psy9001 178 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 257 (1351)
Q Consensus 178 ~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~ 257 (1351)
+.+|+|.+ -..++.+ .|+|++|+++ |||||+||||+ |||+|||+ . +
T Consensus 2 ~~~~~q~f-~w~~~~~-g~~~~~i~~k-LdyL~~LGv~a----IwL~Pi~~--------------------~--~----- 47 (394)
T d2d3na2 2 NGTMMQYF-EWYLPND-GNHWNRLNSD-ASNLKSKGITA----VWIPPAWK--------------------G--A----- 47 (394)
T ss_dssp CCCEEECC-CTTCCSS-SCHHHHHHHH-HHHHHHHTCCE----EEECCCSE--------------------E--S-----
T ss_pred CccEEEEE-ecccCCC-CCcHHHHHHH-HHHHHHcCCCE----EEECcCcc--------------------C--C-----
Confidence 45777764 1123333 4789999999 99999999999 99999654 2 1
Q ss_pred CccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9001 258 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 337 (1351)
Q Consensus 258 ~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VI 337 (1351)
....|||++.++|.. . ... ....|||+|||++|||+||++||++||+||
T Consensus 48 ~~~~~gY~~~~~yd~--------------~----~~~-------------~~~~vd~~~Gt~~df~~Lv~~aH~~GIkVi 96 (394)
T d2d3na2 48 SQNDVGYGAYDLYDL--------------G----EFN-------------QKGTVRTKYGTRSQLQAAVTSLKNNGIQVY 96 (394)
T ss_dssp STTCCSCSEEETTCS--------------S----CSC-------------BTTBSSBTTBCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCCcccCccc--------------c----ccc-------------ccCCcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 123489999888811 0 111 123467999999999999999999999999
Q ss_pred EEeeccccccCCcCCc--------------------------ccCCCCCC-------cCcccC-----C-----------
Q psy9001 338 LDVVHSHASKNVLDGL--------------------------NEFDGTQA-------CFFHDG-----P----------- 368 (1351)
Q Consensus 338 LDvV~NH~~~~~~~~~--------------------------~~f~g~~~-------~yy~~~-----~----------- 368 (1351)
||+|+||++..+.+.. ..+.+... .+++.. .
T Consensus 97 lDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (394)
T d2d3na2 97 GDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKF 176 (394)
T ss_dssp EEECCSEECSCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEEESCCTTTCCSSCEEEE
T ss_pred EEEecccccCccccccccccccCcccccccccccccccccccccCccccCCCCccccccccCCCcccccccCCCCCccee
Confidence 9999999986431100 00111000 011000 0
Q ss_pred CCCCCCC--------------CCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccC
Q psy9001 369 RGTHPLW--------------DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 434 (1351)
Q Consensus 369 ~~~~~~w--------------~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~ 434 (1351)
.+....| ..++||+.||+||++|++++++|++++||||||+|+|.++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~~~~~~~~w~~~~giDGfR~D~a~~~------------------- 237 (394)
T d2d3na2 177 RGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHI------------------- 237 (394)
T ss_dssp CSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGGS-------------------
T ss_pred cCCCCccccccccccccccccCCcccccCCHHHHHHHHHhhhhhhcccCcceEEecccccC-------------------
Confidence 0000111 1357899999999999999999999999999999999887
Q ss_pred CCccCchHHHHHHHHHHHHHh-hCCCeEEEEEcCCCCCCccc
Q psy9001 435 GLNVDTDALIYLMVANKFLHD-KYPEIITIAEDVSGMPASCR 475 (1351)
Q Consensus 435 ~~~~~~~~~~f~~~~~~~v~~-~~P~~~~iaE~~~~~p~~~~ 475 (1351)
+.+||+++.+.+++ ..|+++++||.|.+.+....
T Consensus 238 -------~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~ 272 (394)
T d2d3na2 238 -------KYSFTRDWINHVRSATGKNMFAVAEFWKNDLGAIE 272 (394)
T ss_dssp -------CHHHHHHHHHHHHHHHTCCCEEEECCCCSCHHHHH
T ss_pred -------ChHHHHHHHHHHHHhcCCceeeccccccccccccc
Confidence 34688888777764 56899999999876555443
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=99.95 E-value=4e-29 Score=290.34 Aligned_cols=224 Identities=20% Similarity=0.205 Sum_probs=139.4
Q ss_pred cccc-ccccc---------cccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCc--------CCCCCC---
Q psy9001 1015 QLKY-LVDEC---------HKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN--------EFDGTQ--- 1073 (1351)
Q Consensus 1015 ~hgY-~~Dy~---------~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~--------~~dg~~--- 1073 (1351)
+||| +.||| +|+|+|||++|||+||++||++||+||||+|+||++..+...-. .+....
T Consensus 59 ~~gY~~~dy~~~~~~~~~~~vd~~~Gt~~d~~~LV~~aH~~GikVIlD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (361)
T d1mxga2 59 SMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGK 138 (361)
T ss_dssp CCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCCEEEEETTTTEEEEEECTTCTTCC
T ss_pred CCCCCcccccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeeeccccCCccccCCccccccccccccccCCC
Confidence 5778 77887 68999999999999999999999999999999999976522100 000000
Q ss_pred --CccccCCCC---CC-CCC-CCCCCCCCCCHHHHHHHHH---HHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCc
Q psy9001 1074 --ACFFHDGPR---GT-HPL-WDSRLFNYSEIEVLRFLLS---NLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY 1143 (1351)
Q Consensus 1074 --~~yf~~~~~---g~-~~~-w~~~dlN~~np~Vr~~lid---~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~ 1143 (1351)
..+....+. .. ... ++..++|+.++.|+.++.+ .+.+|++++||||||||+|.+|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~giDGfR~Daa~~v--------------- 203 (361)
T d1mxga2 139 YTANYLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGY--------------- 203 (361)
T ss_dssp SCCCGGGBSSSSSCSCCSCCCTTSCBBCTTSHHHHHHHTSSTTSHHHHHHHTTCCEEEETTGGGS---------------
T ss_pred CCccccccCcccccccccccccCcccccCCcchhHHHHHHHHHHHhhhhhhcCCcceeecchhhC---------------
Confidence 011110010 00 111 1345899999999999964 4568889999999999999988
Q ss_pred ccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCccccccc--CCcccccccccccccccccccccccccCc
Q psy9001 1144 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTE--GGTGFDYRLGQYLHQHSILFPRVGVEQAG 1221 (1351)
Q Consensus 1144 ~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~--gg~GFdy~~~~~~h~~~~~f~~~~~e~n~ 1221 (1351)
+..||+++.+.+ ...++||.|.+.+.....+.. +...|| |+.. .
T Consensus 204 -----------~~~f~~~~~~~~-----~~~~~gE~~~~~~~~~~~~~~~~~~~~~d-------------f~~~-----~ 249 (361)
T d1mxga2 204 -----------GAWVVRDWLNWW-----GGWAVGEYWDTNVDALLSWAYESGAKVFD-------------FPLY-----Y 249 (361)
T ss_dssp -----------CHHHHHHHHHHH-----CCCEEECCCCSCHHHHHHHHHHHTSEEEC-------------HHHH-----H
T ss_pred -----------CHHHHHHHHhhc-----CCceecccccCCHHHHhhhhhccCCcccc-------------chHH-----H
Confidence 346777777654 457899998776555443321 111233 2211 2
Q ss_pred hhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHH
Q psy9001 1222 KYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMN 1301 (1351)
Q Consensus 1222 ~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~ 1301 (1351)
.+++++... ..... ..... . ........|.+. ++|++|||+.|.. ..++
T Consensus 250 ~l~~~~~~~-----~~~~~----~~~~~-----~-~~~~~~~~~~~~-----v~fl~NHD~~R~~-----------~~~~ 298 (361)
T d1mxga2 250 KMDEAFDNN-----NIPAL----VYALQ-----N-GQTVVSRDPFKA-----VTFVANHDTDIIW-----------NKYP 298 (361)
T ss_dssp HHHHHHTTT-----CHHHH----HHHHH-----T-TCSSTTTCTTTE-----EEESCCSSCCCCS-----------CHHH
T ss_pred HHHHHHhcC-----ChHHH----HHHHh-----h-ccccccCCHHHh-----eeeCcccCCcccc-----------cHHH
Confidence 233333111 00000 00000 0 000000112222 8999999987642 1467
Q ss_pred HHHHHHccCCccEEEee
Q psy9001 1302 GFGIQTLPTQSPLYLVA 1318 (1351)
Q Consensus 1302 A~allltspGiP~If~g 1318 (1351)
|++++||+||+||||+|
T Consensus 299 a~a~llt~pGiP~iyYG 315 (361)
T d1mxga2 299 AYAFILTYEGQPVIFYR 315 (361)
T ss_dssp HHHHHHHSSSEEEEEHH
T ss_pred HHHHHHcCCCccEEEeC
Confidence 99999999999999999
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Probab=99.95 E-value=9.5e-28 Score=281.43 Aligned_cols=191 Identities=18% Similarity=0.223 Sum_probs=139.0
Q ss_pred CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccch
Q psy9001 195 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 274 (1351)
Q Consensus 195 ~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~ 274 (1351)
-|+|+||+++ |||||+||||+ |||||||+ . +. ...+||++.++|
T Consensus 17 gg~~~gi~~k-Ldylk~LGvta----I~L~Pi~~--------------------~--~~-----~~~~gy~~~~~Y---- 60 (393)
T d1e43a2 17 GQHWKRLQND-AEHLSDIGITA----VWIPPAYK--------------------G--LS-----QSDNGYGPYDLY---- 60 (393)
T ss_dssp SCHHHHHHHH-HHHHHHHTCCE----EEECCCSE--------------------E--SS-----TTCCSSSEEETT----
T ss_pred CCCHHHHHHH-HHHHHHcCCCE----EEeCcCcc--------------------C--CC-----CCCCCCCcccCc----
Confidence 4899999999 99999999999 99999664 2 11 234899999988
Q ss_pred hhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCc-
Q psy9001 275 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL- 353 (1351)
Q Consensus 275 e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~- 353 (1351)
.+.. ..++..|||++|+.+|||+||++||++||+||||+|+|||+..+.+..
T Consensus 61 -----------------~~~~----------~~~~~~vd~~~Gt~~df~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~ 113 (393)
T d1e43a2 61 -----------------DLGE----------FQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDV 113 (393)
T ss_dssp -----------------CSSC----------SCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEE
T ss_pred -----------------cccc----------ccccCccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeeccccCCCccccc
Confidence 3320 011234779999999999999999999999999999999997654310
Q ss_pred -------------------------ccCCCCCCc-------Ccc-----------------cCCCCCCCCC---------
Q psy9001 354 -------------------------NEFDGTQAC-------FFH-----------------DGPRGTHPLW--------- 375 (1351)
Q Consensus 354 -------------------------~~f~g~~~~-------yy~-----------------~~~~~~~~~w--------- 375 (1351)
..+.+.... +++ ....+....|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (393)
T d1e43a2 114 TAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWDWEVSSENGNY 193 (393)
T ss_dssp EEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEEESCBTTTTBCCEEEECSSSCCCCSSSCCTTSCC
T ss_pred cccccCccccccccccccccccccccccCCCCCCCcccccccccCCCCCccccCCcCCcccccCccccccccccccccee
Confidence 001110000 000 0000000011
Q ss_pred ---CCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHH
Q psy9001 376 ---DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKF 452 (1351)
Q Consensus 376 ---~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~ 452 (1351)
..++||+.||+|+++|++++++|++++||||||+|++..+ ...||+.+.+.
T Consensus 194 ~~~~~pdln~~np~v~~~~~~~~~~w~~~~GiDGfR~Da~~~~--------------------------~~~f~~~~~~~ 247 (393)
T d1e43a2 194 DYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHI--------------------------KFSFLRDWVQA 247 (393)
T ss_dssp CCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGS--------------------------CHHHHHHHHHH
T ss_pred ccccccccccCChhhhHHHHHHHHhhhhhcCcceEEeeccccC--------------------------CHHHHHHHHHH
Confidence 1356899999999999999999999999999999999877 24688887777
Q ss_pred HHh-hCCCeEEEEEcCCCCCCcc
Q psy9001 453 LHD-KYPEIITIAEDVSGMPASC 474 (1351)
Q Consensus 453 v~~-~~P~~~~iaE~~~~~p~~~ 474 (1351)
+++ ..|+++++||.|...+...
T Consensus 248 ~~~~~~~~~~~~gE~~~~~~~~~ 270 (393)
T d1e43a2 248 VRQATGKEMFTVAEYWQNNAGKL 270 (393)
T ss_dssp HHHHHCSCCEEEECCCCSCHHHH
T ss_pred HHHhcCcceEEeeeecCCcHHhh
Confidence 765 5789999999987655443
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=99.95 E-value=1.4e-28 Score=282.54 Aligned_cols=244 Identities=14% Similarity=0.112 Sum_probs=142.3
Q ss_pred ccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcC--------------------------CC------
Q psy9001 1023 CHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE--------------------------FD------ 1070 (1351)
Q Consensus 1023 ~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~--------------------------~d------ 1070 (1351)
++++|+|||++|||+||++||++||+||||||+|||+..+...... ..
T Consensus 71 ~~vd~~~Gt~~efk~lV~~~H~~GI~VilDvV~NHt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (390)
T d1ud2a2 71 GTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAY 150 (390)
T ss_dssp TBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCGGGTTSS
T ss_pred CCcCCCCCCHHHHHHHHHHHHhcCCceEEEEccccccCcccchhhhhcccCcccccccccccccccccccccCCccCCcC
Confidence 5899999999999999999999999999999999999865221000 00
Q ss_pred -CCCCccccC-----------------CCCC----------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy9001 1071 -GTQACFFHD-----------------GPRG----------THPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRF 1122 (1351)
Q Consensus 1071 -g~~~~yf~~-----------------~~~g----------~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRf 1122 (1351)
.....+++. .... ....-...++|..++.+++++.+++.+|+.++|+||||+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~dg~r~ 230 (390)
T d1ud2a2 151 SDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRL 230 (390)
T ss_dssp CCCCBCGGGEEEEEEETTTTEEEEEEETTCCCCSSCCCTTSCCCCCSSEEECTTSHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCcccccccCCCCccccCCCCceeeccCCccccccccccccccccccccccccCHHHHHHHHHhhhhccceeccccccc
Confidence 000011110 0000 000012347899999999999999999999999999999
Q ss_pred cCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHH-HHhhCCCeEEEEccCCCCCCcccccccCCccccccc
Q psy9001 1123 DGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKF-LHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1201 (1351)
Q Consensus 1123 D~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~-l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~ 1201 (1351)
|++.++ ...++..+.+. .....+.+..++|.+................ .
T Consensus 231 D~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~--- 280 (390)
T d1ud2a2 231 DAIKHI--------------------------PFWYTSDWVRHQRNEADQDLFVVGEYWKDDVGALEFYLDEMNW-E--- 280 (390)
T ss_dssp TTGGGS--------------------------CHHHHHHHHHHHHHHCSSCCEEEECCCCSCHHHHHHHHHHTTT-C---
T ss_pred cchhhc--------------------------ChHHHHHHHHHHhhhhhhheeeeccccCCcccccccccccccc-c---
Confidence 999877 23444555544 3456788999999876543333222111100 0
Q ss_pred ccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCC
Q psy9001 1202 GQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVR 1281 (1351)
Q Consensus 1202 ~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD 1281 (1351)
... ..+.. ...+..++.... ...+... . ........|.+ +++|++|||
T Consensus 281 -~~~----~~~~~-----~~~~~~~~~~~~-----~~~~~~~-----~-------~~~~~~~~~~~-----~v~fl~nHD 328 (390)
T d1ud2a2 281 -MSL----FDVPL-----NYNFYRASQQGG-----SYDMRNI-----L-------RGSLVEAHPMH-----AVTFVDNHD 328 (390)
T ss_dssp -SEE----ECHHH-----HHHHHHHHHHCT-----TSCGGGT-----T-------TTCHHHHCGGG-----EEECSCCTT
T ss_pred -cch----hhHHH-----HHHHHHHhcccc-----hHHHHHH-----H-------hhccccCCccc-----eEEEccCCc
Confidence 000 00110 112222221100 0000000 0 00000011222 289999999
Q ss_pred CCcCCcccccccCCHHHHHHHHHHHHccCCccEEEee-cccCCCCccce
Q psy9001 1282 EERNNENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCSTREV 1329 (1351)
Q Consensus 1282 ~~rn~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~~~~~~~ 1329 (1351)
+.|... +.....+..+.++|++|+||+||+|||||| |+...++....
T Consensus 329 ~~r~~~-~~~~~~~~~~~~~~~~il~~~pG~P~iy~GdE~G~~~~~~~~ 376 (390)
T d1ud2a2 329 TQPGES-LESWVADWFKPLAYATILTREGGYPNVFYGDYYGIPNDNISA 376 (390)
T ss_dssp TSTTST-TCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCC
T ss_pred cccccc-cccCcCHHHHHHHHHHHHHhCCCCeEEEchhhcCCCCCCCcc
Confidence 987521 111122234556777888999999999999 88777665543
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.94 E-value=2.5e-27 Score=277.44 Aligned_cols=191 Identities=20% Similarity=0.244 Sum_probs=134.4
Q ss_pred CCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccc
Q psy9001 194 KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMD 273 (1351)
Q Consensus 194 ~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~ 273 (1351)
..|.|++|+++ |||||+||||+ |||||||+ . +. ...|||++.+||
T Consensus 19 ~~~~~~~i~~k-LdyLk~LGv~a----I~L~Pi~~--------------------~--~~-----~~~~GY~~~d~y--- 63 (393)
T d1hvxa2 19 DGTLWTKVANE-ANNLSSLGITA----LWLPPAYK--------------------G--TS-----RSDVGYGVYDLY--- 63 (393)
T ss_dssp SSCHHHHHHHH-HHHHHHTTCCE----EEECCCSE--------------------E--SS-----TTCCSSSEEETT---
T ss_pred CCChHHHHHHH-HHHHHHcCCCE----EEECCCCc--------------------C--CC-----CCCCCCCccCcc---
Confidence 35789999999 99999999999 99999653 2 11 234999999999
Q ss_pred hhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccC--CcC
Q psy9001 274 KEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN--VLD 351 (1351)
Q Consensus 274 ~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~--~~~ 351 (1351)
.+...+ ....|||+|||.+|||+||++||++||+||||+|+||++.. +.|
T Consensus 64 ------------------~~~~~~----------~~~~vd~~~Gt~~df~~LV~~aH~~GIkVIlDvV~NHt~~~~~~~w 115 (393)
T d1hvxa2 64 ------------------DLGEFN----------QKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEW 115 (393)
T ss_dssp ------------------CSSCSC----------BTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEE
T ss_pred ------------------cccccc----------ccCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEEecccccccCCccc
Confidence 322111 11246799999999999999999999999999999999742 111
Q ss_pred Cc------------------------ccCCCCCC-------cCcccC---------------CCCCCCCC----------
Q psy9001 352 GL------------------------NEFDGTQA-------CFFHDG---------------PRGTHPLW---------- 375 (1351)
Q Consensus 352 ~~------------------------~~f~g~~~-------~yy~~~---------------~~~~~~~w---------- 375 (1351)
.. ..+.+... .+++.. ..+....|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (393)
T d1hvxa2 116 VDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGN 195 (393)
T ss_dssp EEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEEEEEETTTTEEEEEEECSTTCCCCSSCCCTTSC
T ss_pred eeecccCccccccccCCCcccccccccCCCCCCCCCCCcccccccCCCCcccccCCcCccccccCCcCccccccccccce
Confidence 00 00000000 000000 00000111
Q ss_pred ----CCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHH
Q psy9001 376 ----DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANK 451 (1351)
Q Consensus 376 ----~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~ 451 (1351)
..++||+.||+|+++|++++++|++++||||||+|+|.++ ...||+.+.+
T Consensus 196 ~~~~~~~dln~~np~V~~~l~~~~~~w~~~~giDGfR~D~a~~i--------------------------~~~f~~~~~~ 249 (393)
T d1hvxa2 196 YDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHI--------------------------KFSFFPDWLS 249 (393)
T ss_dssp CCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS--------------------------CTTHHHHHHH
T ss_pred eeccccceeccCChHHHHHHHHHHHHHHHhhCCceeeeeccccC--------------------------ChhHHHHHHH
Confidence 1357899999999999999999999999999999999987 1246777666
Q ss_pred HHHh-hCCCeEEEEEcCCCCCCc
Q psy9001 452 FLHD-KYPEIITIAEDVSGMPAS 473 (1351)
Q Consensus 452 ~v~~-~~P~~~~iaE~~~~~p~~ 473 (1351)
.+++ ..++++++||.|.+.+..
T Consensus 250 ~~~~~~~~~~~~~gE~~~~~~~~ 272 (393)
T d1hvxa2 250 YVRSQTGKPLFTVGEYWSYDINK 272 (393)
T ss_dssp HHHHHHCCCCEEEECCCCSCHHH
T ss_pred HHHHhcCCcceeeeeccCccHHH
Confidence 6654 456789999988765443
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=99.94 E-value=1.2e-26 Score=269.39 Aligned_cols=202 Identities=17% Similarity=0.157 Sum_probs=134.8
Q ss_pred CCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCC
Q psy9001 177 DNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 256 (1351)
Q Consensus 177 ~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s 256 (1351)
++-+|+|.+- |......|.|++|+++ |||||+||||+ |||||||+ . .
T Consensus 8 ~~~~~~q~f~--w~~~~~~~~~~gi~~k-Ldylk~LGv~~----Iwl~Pv~~--------------------~--~---- 54 (361)
T d1mxga2 8 EGGVIMQAFY--WDVPGGGIWWDHIRSK-IPEWYEAGISA----IWLPPPSK--------------------G--M---- 54 (361)
T ss_dssp GTCCEEECCC--TTCCCSSCHHHHHHHH-HHHHHHHTCCE----EECCCCSE--------------------E--T----
T ss_pred cCCEEEEeee--cCCCCCCchHHHHHHH-HHHHHhcCCCE----EEeCcCee--------------------C--C----
Confidence 4556666433 1112233568999999 99999999999 99999553 1 1
Q ss_pred CCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEE
Q psy9001 257 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 336 (1351)
Q Consensus 257 ~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~V 336 (1351)
....+|||++.+|| .+...++. ..|||+|||.+|||+||++||++||+|
T Consensus 55 ~~~~~~gY~~~dy~---------------------~~~~~~~~----------~~vd~~~Gt~~d~~~LV~~aH~~GikV 103 (361)
T d1mxga2 55 SGGYSMGYDPYDYF---------------------DLGEYYQK----------GTVETRFGSKEELVRLIQTAHAYGIKV 103 (361)
T ss_dssp TGGGCCSSSEEETT---------------------CSSCSCBT----------TBSSCSSCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCCCCCccccc---------------------ccCccccc----------cCCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 11245999999999 33311111 136799999999999999999999999
Q ss_pred EEEeeccccccCCcCCc--------ccCCCCCC-c----Cc--ccCCC-CC-CCC-CCCccCCCCCHHHHHHHHH---HH
Q psy9001 337 LLDVVHSHASKNVLDGL--------NEFDGTQA-C----FF--HDGPR-GT-HPL-WDSRLFNYSEIEVLRFLLS---NL 395 (1351)
Q Consensus 337 ILDvV~NH~~~~~~~~~--------~~f~g~~~-~----yy--~~~~~-~~-~~~-w~~~~ln~~~p~v~~~l~~---~l 395 (1351)
|||+|+||++..+.+.. ..+..... . |. +.+.. .. ... +.-+++++.++.|+.++++ .+
T Consensus 104 IlD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~~ 183 (361)
T d1mxga2 104 IADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESY 183 (361)
T ss_dssp EEEECCSBCCCCEEEEETTTTEEEEEECTTCTTCCSCCCGGGBSSSSSCSCCSCCCTTSCBBCTTSHHHHHHHTSSTTSH
T ss_pred EEEeeeccccCCccccCCccccccccccccccCCCCCccccccCcccccccccccccCcccccCCcchhHHHHHHHHHHH
Confidence 99999999986542210 01111111 1 11 11100 00 011 1236789999999999964 45
Q ss_pred HHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCc
Q psy9001 396 RWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPAS 473 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~ 473 (1351)
.+|++++||||||+|+|.+| +..||+++.+.+ ...++||.|.+.+..
T Consensus 184 ~~~~~~~giDGfR~Daa~~v--------------------------~~~f~~~~~~~~-----~~~~~gE~~~~~~~~ 230 (361)
T d1mxga2 184 AAYLRSIGFDGWRFDYVKGY--------------------------GAWVVRDWLNWW-----GGWAVGEYWDTNVDA 230 (361)
T ss_dssp HHHHHHTTCCEEEETTGGGS--------------------------CHHHHHHHHHHH-----CCCEEECCCCSCHHH
T ss_pred hhhhhhcCCcceeecchhhC--------------------------CHHHHHHHHhhc-----CCceecccccCCHHH
Confidence 67888999999999999987 235777776544 346789988665433
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Probab=99.94 E-value=6.9e-27 Score=272.48 Aligned_cols=182 Identities=15% Similarity=0.107 Sum_probs=130.6
Q ss_pred CHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhh
Q psy9001 197 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEM 276 (1351)
Q Consensus 197 ~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~ 276 (1351)
+|++|++++.+|||+||||+ ||||| +.|+ +...+ ..++|||++.+|-
T Consensus 20 ~~~~i~~~~~~yl~~lG~ta----i~l~P--------------------~~e~--~~~~~-~~~~~~Y~~~dY~------ 66 (378)
T d1jaea2 20 KWNDIADECERFLQPQGFGG----VQISP--------------------PNEY--LVADG-RPWWERYQPVSYI------ 66 (378)
T ss_dssp CHHHHHHHHHHTTTTTTEEE----EECCC--------------------CSCB--BCCTT-CCGGGGGSBCCSC------
T ss_pred cHHHHHHHHHHHHHHhCCCE----EEeCc--------------------cccc--CCCCC-CCCccccCCccce------
Confidence 69999999555999999999 99999 4444 32222 2356789888843
Q ss_pred hcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCc--c
Q psy9001 277 YTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL--N 354 (1351)
Q Consensus 277 ~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~--~ 354 (1351)
++ ++|||++|||+||++||++||+||||+|+||++.++.++. .
T Consensus 67 ----------------id-------------------~~~Gt~~df~~LV~~aH~~GI~VilDvV~NH~~~~~~~~~~~~ 111 (378)
T d1jaea2 67 ----------------IN-------------------TRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGS 111 (378)
T ss_dssp ----------------SE-------------------ETTEEHHHHHHHHHHHHHTTCEEEEEECCSBCCSSCEEBTTSC
T ss_pred ----------------eC-------------------CCCCCHHHHHHHHHHHHhcCceeeeeecccccccccCCCcccc
Confidence 44 8999999999999999999999999999999998765432 1
Q ss_pred cCCCCCCcCc----c---cCCCCCCCCCC------------CccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 355 EFDGTQACFF----H---DGPRGTHPLWD------------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 355 ~f~g~~~~yy----~---~~~~~~~~~w~------------~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
.++.....++ . ........+|. .++||+++|+||++|++++++|+ ++||||||||+|.+|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dln~~np~V~~~l~~~~~~w~-e~gvDGfR~Daa~~i 190 (378)
T d1jaea2 112 SADHDGMNYPAVPYGSGDFHSPCEVNNYQDADNVRNCELVGLRDLNQGSDYVRGVLIDYMNHMI-DLGVAGFRVDAAKHM 190 (378)
T ss_dssp EEBTTTTBBTTTTBCGGGBCCCCBCCCTTCHHHHHHSBBTTBCBBCTTSHHHHHHHHHHHHHHH-HTTCCEEEETTGGGS
T ss_pred ccCCCcccCcCCCCCccccCCCCCcCCCCCccccccccccccCccccCCHHHHHHHHHHHHHHH-HhCCCceeeeeeccc
Confidence 1111111110 0 01111112222 25899999999999999999999 599999999999988
Q ss_pred ccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhC--------CCeEEEEEcCCCCCCc
Q psy9001 416 LYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY--------PEIITIAEDVSGMPAS 473 (1351)
Q Consensus 416 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~--------P~~~~iaE~~~~~p~~ 473 (1351)
...|++.+.+.++... ++..+++|.+.+.+..
T Consensus 191 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~ 230 (378)
T d1jaea2 191 --------------------------SPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGGEA 230 (378)
T ss_dssp --------------------------CHHHHHHHHHTCCCCCGGGTCCTTCCCEEEEECCCCSSSS
T ss_pred --------------------------CHHHHHHHHHhhhhhccccccccccccceeeehhcccccc
Confidence 2346666666665443 3578999987665443
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=99.93 E-value=4.9e-26 Score=262.85 Aligned_cols=179 Identities=14% Similarity=0.141 Sum_probs=131.7
Q ss_pred CHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhh
Q psy9001 197 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEM 276 (1351)
Q Consensus 197 ~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~ 276 (1351)
+|++|++++++|||+||||+ ||||| +.|+ +..+ +.+|||++++ |
T Consensus 12 ~~~~i~~~~~dyl~~lG~ta----i~l~P--------------------~~~~--~~~~---~~y~gY~~~d-y------ 55 (354)
T d1g94a2 12 NWQDVAQECEQYLGPKGYAA----VQVSP--------------------PNEH--ITGS---QWWTRYQPVS-Y------ 55 (354)
T ss_dssp CHHHHHHHHHHTHHHHTCCE----EEECC--------------------CSCB--BCSS---SGGGGGSBSC-S------
T ss_pred CHHHHHHHHHHHHHHcCCCE----EEeCc--------------------CccC--CCCC---CCcccCCCCc-c------
Confidence 49999999779999999999 99999 4444 3222 3567999988 6
Q ss_pred hcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcc--
Q psy9001 277 YTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN-- 354 (1351)
Q Consensus 277 ~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~-- 354 (1351)
+++ |+||+++|||+||++||++||+||||+|+||++.++.++..
T Consensus 56 ---------------~vd-------------------~~~Gt~~dfk~LV~~aH~~GI~VilDvV~NH~~~~~~~~~~~~ 101 (354)
T d1g94a2 56 ---------------ELQ-------------------SRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAGN 101 (354)
T ss_dssp ---------------CSC-------------------BTTBCHHHHHHHHHHHHHTTCEEEEEEECSEECSSCEEBTTSC
T ss_pred ---------------eeC-------------------CCCCCHHHHHHHHHHHhccCceeEEEeeccccccccCCCcccc
Confidence 455 99999999999999999999999999999999988755421
Q ss_pred cC-CCCCC----cCcccCCCCCCC------------CC-CCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccc
Q psy9001 355 EF-DGTQA----CFFHDGPRGTHP------------LW-DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 416 (1351)
Q Consensus 355 ~f-~g~~~----~yy~~~~~~~~~------------~w-~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~ 416 (1351)
.+ ....+ ..|+........ .+ +.++||+.+|+||++|++++++|++ +||||||+|++.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dln~~n~~Vr~~l~d~~~~~~e-~gvdGfR~Da~~~~- 179 (354)
T d1g94a2 102 SFGNKSFPIYSPQDFHESCTINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYINDLQA-IGVKGFRFDASKHV- 179 (354)
T ss_dssp EEBTTBCSSCCGGGBCCCCBCCTTHHHHCHHHHHHSBSTTCEEBCTTSHHHHHHHHHHHHHHHH-HTCCEEEEETGGGS-
T ss_pred cccccCCCcCCccccccCCCCCCccccccccceeccccCCCCccccCCHHHHHHHHHHHHHhhh-hccchhhccchhhC-
Confidence 11 11001 111111110000 01 1357999999999999999999885 99999999999987
Q ss_pred cccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCccc
Q psy9001 417 YHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCR 475 (1351)
Q Consensus 417 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~~~ 475 (1351)
...||+.+. ....+...+++|.+...+....
T Consensus 180 -------------------------~~~~~~~~~---~~~~~~~~~~~e~~~~~~~~~~ 210 (354)
T d1g94a2 180 -------------------------AASDIQSLM---AKVNGSPVVFQEVIDQGGEAVG 210 (354)
T ss_dssp -------------------------CHHHHHHHH---HTSCSCCEEEECCCCSSCCSSC
T ss_pred -------------------------CHHHHHHHH---hhhcccceeEEEEeccCccccc
Confidence 234565554 4567788999998877665444
|
| >d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Sucrose phosphorylase species: Bifidobacterium adolescentis [TaxId: 1680]
Probab=99.92 E-value=8e-26 Score=260.33 Aligned_cols=158 Identities=12% Similarity=0.035 Sum_probs=115.3
Q ss_pred CCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCC
Q psy9001 177 DNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 256 (1351)
Q Consensus 177 ~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s 256 (1351)
++.|.|.++.-++ .-|+|+||+++ |||||+||||+ |||||||++ +
T Consensus 2 ~~~~~~~~y~d~~----~~Gdl~g~~~~-Ldyl~~LGv~~----I~L~Pi~~~----------------------~---- 46 (434)
T d1r7aa2 2 KNKVQLITYADRL----GDGTIKSMTDI-LRTRFDGVYDG----VHILPFFTP----------------------F---- 46 (434)
T ss_dssp CSSCEEEECSSSB----SSSSHHHHHHH-HHHHSTTTCCE----EEECCCEEC----------------------S----
T ss_pred CCceEEEEecCCC----CCCCHHHHHHH-HHHHHHcCCCE----EEECCCCCC----------------------C----
Confidence 3556677666544 24999999999 99999999999 999996641 1
Q ss_pred CCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEE
Q psy9001 257 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 336 (1351)
Q Consensus 257 ~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~V 336 (1351)
...+|||++.||+ +++ |+|||++|||+| ++||+|
T Consensus 47 -~~~d~GY~~~Dy~---------------------~vd-------------------p~~Gt~~d~k~L-----~rGi~V 80 (434)
T d1r7aa2 47 -DGADAGFDPIDHT---------------------KVD-------------------ERLGSWDDVAEL-----SKTHNI 80 (434)
T ss_dssp -SSSSTTSSCSEEE---------------------EEC-------------------TTTCCHHHHHHH-----HTTSEE
T ss_pred -CCCCCCcCccccc---------------------ccC-------------------cccCCHHHHHHH-----HhCCee
Confidence 1245999999999 776 999999999999 379999
Q ss_pred EEEeeccccccCCcCCcccC---CCC-CCcCccc-------------------CCCCC----------------CCCCCC
Q psy9001 337 LLDVVHSHASKNVLDGLNEF---DGT-QACFFHD-------------------GPRGT----------------HPLWDS 377 (1351)
Q Consensus 337 ILDvV~NH~~~~~~~~~~~f---~g~-~~~yy~~-------------------~~~~~----------------~~~w~~ 377 (1351)
|||+|+|||+..+.+..... ... ...+|.. ...+. ......
T Consensus 81 IlDvV~NHt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (434)
T d1r7aa2 81 MVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKTRLVWVSFTPQQ 160 (434)
T ss_dssp EEEEECSEEETTSHHHHHHHHHGGGSTTGGGBCBHHHHCTTCBCHHHHHTSCCSSSSCSEEEEEETTEEEEEECSSSTTE
T ss_pred eEEecccccccccchhhhhhhccCCCcccccccccCCCCCCccccCCCCcccccCCcccccccccccccceeeecccccc
Confidence 99999999998774432100 000 0000000 00000 000113
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccc
Q psy9001 378 RLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 416 (1351)
Q Consensus 378 ~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~ 416 (1351)
.++|+.+|+|++++.+++++|++ +|+||||+|++..+.
T Consensus 161 ~~ln~~~p~v~~~~~~~~~~w~~-~g~dg~r~d~~~~~~ 198 (434)
T d1r7aa2 161 VDIDTDSDKGWEYLMSIFDQMAA-SHVSYIRLDAVGYGA 198 (434)
T ss_dssp EEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEEETGGGSC
T ss_pred chhcccchhhhhhhhhHhhhhhc-cCCcccccccccccc
Confidence 57999999999999999999997 799999999999873
|
| >d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Sucrose phosphorylase species: Bifidobacterium adolescentis [TaxId: 1680]
Probab=99.92 E-value=6.5e-26 Score=261.12 Aligned_cols=148 Identities=10% Similarity=0.007 Sum_probs=102.2
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCc---CCC-CCCCccccC----C----
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN---EFD-GTQACFFHD----G---- 1080 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~---~~d-g~~~~yf~~----~---- 1080 (1351)
++||| ++||++|||+|||++|||+| ++||+||||||+|||+..+..... ... +....+|.. .
T Consensus 49 ~d~GY~~~Dy~~vdp~~Gt~~d~k~L-----~rGi~VIlDvV~NHt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (434)
T d1r7aa2 49 ADAGFDPIDHTKVDERLGSWDDVAEL-----SKTHNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGA 123 (434)
T ss_dssp SSTTSSCSEEEEECTTTCCHHHHHHH-----HTTSEEEEEEECSEEETTSHHHHHHHHHGGGSTTGGGBCBHHHHCTTCB
T ss_pred CCCCcCcccccccCcccCCHHHHHHH-----HhCCeeeEEecccccccccchhhhhhhccCCCcccccccccCCCCCCcc
Confidence 57999 99999999999999999999 479999999999999987732110 000 000011100 0
Q ss_pred ---------C--CCC----------------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCC
Q psy9001 1081 ---------P--RGT----------------HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNH 1133 (1351)
Q Consensus 1081 ---------~--~g~----------------~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~ 1133 (1351)
. .+. .......++|+.+|+|++++.+++++|++ +|+||||+|++.++.....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~~~~~~~~w~~-~g~dg~r~d~~~~~~~~~~ 202 (434)
T d1r7aa2 124 TEEDLAGIYRPRPGLPFTHYKFAGKTRLVWVSFTPQQVDIDTDSDKGWEYLMSIFDQMAA-SHVSYIRLDAVGYGAKEAG 202 (434)
T ss_dssp CHHHHHTSCCSSSSCSEEEEEETTEEEEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHH-TTCCEEEEETGGGSCCCTT
T ss_pred ccCCCCcccccCCcccccccccccccceeeeccccccchhcccchhhhhhhhhHhhhhhc-cCCcccccccccccccccc
Confidence 0 000 00011237999999999999999999997 5999999999998843211
Q ss_pred CCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccC
Q psy9001 1134 GCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV 1180 (1351)
Q Consensus 1134 g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~ 1180 (1351)
.. .........+++.+...+.+..+.....++.+
T Consensus 203 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (434)
T d1r7aa2 203 TS-------------CFMTPKTFKLISRLREEGVKRGLEILIEVHSY 236 (434)
T ss_dssp SC-------------SSSCHHHHHHHHHHHHHHHHTTCEEEECCCSC
T ss_pred cc-------------cccccchhhHHHHHHHHHhccccccccccccc
Confidence 10 11245567778888888888777777766643
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=99.91 E-value=9.7e-25 Score=250.16 Aligned_cols=188 Identities=19% Similarity=0.242 Sum_probs=133.9
Q ss_pred CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccch
Q psy9001 195 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 274 (1351)
Q Consensus 195 ~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~ 274 (1351)
-|+|++|++| |||||+||||+ |||||||+ . +. ..+|||++.+||
T Consensus 19 ~~~~~~i~~k-LdyLk~LGvt~----I~l~Pi~~--------------------~--~~-----~~~~gY~~~d~~---- 62 (390)
T d1ud2a2 19 GQHWNRLHDD-AAALSDAGITA----IWIPPAYK--------------------G--NS-----QADVGYGAYDLY---- 62 (390)
T ss_dssp SCHHHHHHHH-HHHHHHHTCCE----EEECCCSE--------------------E--SS-----TTCCSSSEEETT----
T ss_pred CCCHHHHHHH-HHHHHHcCCCE----EEeCCCcc--------------------C--CC-----CCCCCCCccCCc----
Confidence 3899999999 99999999999 99999554 2 21 234999999999
Q ss_pred hhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcc
Q psy9001 275 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN 354 (1351)
Q Consensus 275 e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~ 354 (1351)
++...+ +...+||++|+++|||+||++||++||+||||||+|||+..+.+...
T Consensus 63 -----------------~~~~~~----------~~~~vd~~~Gt~~efk~lV~~~H~~GI~VilDvV~NHt~~~~~~~~~ 115 (390)
T d1ud2a2 63 -----------------DLGEFN----------QKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAV 115 (390)
T ss_dssp -----------------CSSCSC----------BTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEE
T ss_pred -----------------cccccc----------ccCCcCCCCCCHHHHHHHHHHHHhcCCceEEEEccccccCcccchhh
Confidence 332111 12356799999999999999999999999999999999977643210
Q ss_pred --------------------------cCCCCCC-------cCccc-----------------CCC----------CCCCC
Q psy9001 355 --------------------------EFDGTQA-------CFFHD-----------------GPR----------GTHPL 374 (1351)
Q Consensus 355 --------------------------~f~g~~~-------~yy~~-----------------~~~----------~~~~~ 374 (1351)
.+.+..+ .+++. ... .....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (390)
T d1ud2a2 116 QAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDY 195 (390)
T ss_dssp EEEEEETTEEEEECSCCEEEEEEEEBCCGGGTTSSCCCCBCGGGEEEEEEETTTTEEEEEEETTCCCCSSCCCTTSCCCC
T ss_pred hhcccCcccccccccccccccccccccCCccCCcCCCCcccccccCCCCccccCCCCceeeccCCccccccccccccccc
Confidence 0000000 01100 000 00000
Q ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHH-H
Q psy9001 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKF-L 453 (1351)
Q Consensus 375 w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~-v 453 (1351)
-....+|+.++.+++++.+++.+|+.++++||||+|++..+ ...++..+... .
T Consensus 196 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~dg~r~D~~~~~--------------------------~~~~~~~~~~~~~ 249 (390)
T d1ud2a2 196 LLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHI--------------------------PFWYTSDWVRHQR 249 (390)
T ss_dssp CSSEEECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGS--------------------------CHHHHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHhhhhccceeccccccccchhhc--------------------------ChHHHHHHHHHHh
Confidence 11356899999999999999999999999999999999876 12455555444 4
Q ss_pred HhhCCCeEEEEEcCCCCC
Q psy9001 454 HDKYPEIITIAEDVSGMP 471 (1351)
Q Consensus 454 ~~~~P~~~~iaE~~~~~p 471 (1351)
+...+.+..++|.+....
T Consensus 250 ~~~~~~~~~~~e~~~~~~ 267 (390)
T d1ud2a2 250 NEADQDLFVVGEYWKDDV 267 (390)
T ss_dssp HHCSSCCEEEECCCCSCH
T ss_pred hhhhhheeeeccccCCcc
Confidence 566788999999876543
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.91 E-value=4.7e-25 Score=258.81 Aligned_cols=198 Identities=15% Similarity=0.155 Sum_probs=138.1
Q ss_pred CceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCC-
Q psy9001 178 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES- 256 (1351)
Q Consensus 178 ~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s- 256 (1351)
.-+|++++ .| +|++|++++++||++||||+ ||||| +.|+ +...+
T Consensus 10 ~~~i~~~f--~w-------~~~~i~~e~~~yL~~lG~ta----Iwl~P--------------------~~e~--~~~~~~ 54 (403)
T d1hx0a2 10 RTSIVHLF--EW-------RWVDIALECERYLGPKGFGG----VQVSP--------------------PNEN--IVVTNP 54 (403)
T ss_dssp CCEEEEET--TC-------CHHHHHHHHHHTTTTTTCCE----EEECC--------------------CSCB--BCCTTT
T ss_pred CeeEEEee--cC-------cHHHHHHHHHHHHHHhCCCE----EEeCc--------------------CccC--ccCCCC
Confidence 45777653 23 59999998789999999999 99999 4443 21111
Q ss_pred CCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEE
Q psy9001 257 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 336 (1351)
Q Consensus 257 ~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~V 336 (1351)
....++||++.+ | +++ ++|||++|||+||++||++||+|
T Consensus 55 ~~~~y~gY~~~d-Y---------------------~v~-------------------~~~Gt~~dfk~Lv~~aH~~GI~V 93 (403)
T d1hx0a2 55 SRPWWERYQPVS-Y---------------------KLC-------------------TRSGNENEFRDMVTRCNNVGVRI 93 (403)
T ss_dssp TSCGGGGGSBSC-S---------------------CSC-------------------BTTBCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCceeecCCC-C---------------------ccC-------------------CCCCCHHHHHHHHHHHHhcCCEE
Confidence 123456999988 6 455 99999999999999999999999
Q ss_pred EEEeeccccccCCcCCcccCC-CCC--------------CcCcccCC----CCCCCCCC------------CccCCCCCH
Q psy9001 337 LLDVVHSHASKNVLDGLNEFD-GTQ--------------ACFFHDGP----RGTHPLWD------------SRLFNYSEI 385 (1351)
Q Consensus 337 ILDvV~NH~~~~~~~~~~~f~-g~~--------------~~yy~~~~----~~~~~~w~------------~~~ln~~~p 385 (1351)
|||||+||++.++.+...... +.. ...|.... .+....|. .++||+.||
T Consensus 94 IlDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pDLn~~np 173 (403)
T d1hx0a2 94 YVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKD 173 (403)
T ss_dssp EEEECCSEEEETTCCCBSCBSSCCCBBGGGTBBTTTTBCGGGBCTTTCCSTTSBCCCTTCHHHHHHSBGGGEEEBCTTSH
T ss_pred EEEEecccccccccccccccccCcccccccccCCCCCCCCccCCCCcccCCCCCccccCCccceeeccccccCcccCCCH
Confidence 999999999987644321111 100 00011111 11112232 257999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhh-------CC
Q psy9001 386 EVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDK-------YP 458 (1351)
Q Consensus 386 ~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~-------~P 458 (1351)
+||++|++++++|++ +||||||+|++.++ ...|++.....++.. .+
T Consensus 174 ~Vr~~~~~~l~~~~~-~GvdGfR~Da~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 226 (403)
T d1hx0a2 174 YVRSMIADYLNKLID-IGVAGFRIDASKHM--------------------------WPGDIKAVLDKLHNLNTNWFPAGS 226 (403)
T ss_dssp HHHHHHHHHHHHHHH-HTCCEEEETTGGGS--------------------------CHHHHHHHHTTCCCCCTTTSCTTC
T ss_pred HHHHHHHHHHHHHHH-cCCCcccccccccc--------------------------CHHHHHHHHHHHHhhCcccccccC
Confidence 999999999999995 89999999999987 234566666555443 34
Q ss_pred CeEEEEEcCCCCCCcccccc
Q psy9001 459 EIITIAEDVSGMPASCRPVT 478 (1351)
Q Consensus 459 ~~~~iaE~~~~~p~~~~~~~ 478 (1351)
+..+++|.+.+.+......+
T Consensus 227 ~~~~~~E~~~~~~~~~~~~~ 246 (403)
T d1hx0a2 227 RPFIFQEVIDLGGEAIKSSE 246 (403)
T ss_dssp CCEEEECCCCCSSSSSCGGG
T ss_pred CceEEEEEeccCcchhhccc
Confidence 57899998877665555443
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=99.85 E-value=1.3e-22 Score=249.45 Aligned_cols=82 Identities=21% Similarity=0.273 Sum_probs=72.8
Q ss_pred CCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchh
Q psy9001 196 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 275 (1351)
Q Consensus 196 G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e 275 (1351)
+||++++++ |||||+||||+ |||+|||+ +..+| +|||+++||+
T Consensus 14 ftF~~~~~~-LpYL~~LGVs~----IyLsPi~~-----------------------a~~gS----~HGYDv~D~~----- 56 (653)
T d1iv8a2 14 FNFGDVIDN-LWYFKDLGVSH----LYLSPVLM-----------------------ASPGS----NHGYDVIDHS----- 56 (653)
T ss_dssp BCHHHHHHT-HHHHHHHTCCE----EEECCCEE-----------------------ECTTC----SSCCSEEEEE-----
T ss_pred CCHHHHHHh-hHHHHHCCCCE----EEECccCC-----------------------CCCCC----CCCccccCcc-----
Confidence 699999998 99999999999 99999663 11233 5999999999
Q ss_pred hhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCC
Q psy9001 276 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV 349 (1351)
Q Consensus 276 ~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~ 349 (1351)
.++ |++|++++|++||++||++||+||||+|+||++.++
T Consensus 57 ----------------~Vd-------------------p~lGt~edf~~LV~aaH~~Gm~VIlDiVpNH~g~d~ 95 (653)
T d1iv8a2 57 ----------------RIN-------------------DELGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVNS 95 (653)
T ss_dssp ----------------EEC-------------------TTTTHHHHHHHHHHHHHHTTCEEEEEECCSEEECCT
T ss_pred ----------------ccc-------------------hhcCCHHHHHHHHHHHHHCCCEEEEEECCCcccCCc
Confidence 666 999999999999999999999999999999999765
|
| >d1m7xa2 b.71.1.1 (A:623-728) 1,4-alpha-glucan branching enzyme {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: 1,4-alpha-glucan branching enzyme species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=6.8e-20 Score=175.95 Aligned_cols=97 Identities=27% Similarity=0.460 Sum_probs=88.4
Q ss_pred CcceEeecCCCcEEEEEeC-----ceEEEEeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEcc
Q psy9001 520 PGYVSTKHEGDKVIIFERA-----GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLD 594 (1351)
Q Consensus 520 ~~~~~~~~~~~~Vlaf~R~-----~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vln 594 (1351)
..|+...+.+++|++|.|. .||||+||+|. .+.+|+ ||||.+|+|++|||
T Consensus 4 F~Wi~~~d~~~sV~af~R~~~~~~~~vvV~Nfsp~-~~~~Y~------------------------igvp~~G~~~~ilN 58 (106)
T d1m7xa2 4 FEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPV-PRHDYR------------------------FGINQPGKWREILN 58 (106)
T ss_dssp EEEEEEEETTTTEEEEEEECTTCCEEEEEEECSSC-CEEEEC------------------------CBCSSCSEEEEEEE
T ss_pred CEEeeCCCCCCCEEEEEEeCCCCCEEEEEEeCCCC-ccCcEE------------------------cCCCCCCeEEEEEc
Confidence 3456667788999999996 59999999997 899999 99999999999999
Q ss_pred CCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEECC
Q psy9001 595 SDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTTSP 642 (1351)
Q Consensus 595 sD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~~~ 642 (1351)
||+..|||++..+.. .+++++.+++|+++||+|+|||+|++||+++.
T Consensus 59 TD~~~ygGsg~~~~~-~~~~~~~~~~g~~~si~l~lPp~sav~~k~~~ 105 (106)
T d1m7xa2 59 TDSMHYHGSNAGNGG-TVHSDEIASHGRQHSLSLTLPPLATIWLVREA 105 (106)
T ss_dssp TTSTGGGCCCCSCCS-CEECBSCCBTTBSCBCCEEECTTEEEEEEEEC
T ss_pred CCccccCCcCcCCCC-eEEeeecCcCCcceEEEEEcCCCEEEEEEEcC
Confidence 999999999999876 57899999999999999999999999999874
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=99.72 E-value=4e-19 Score=218.21 Aligned_cols=49 Identities=22% Similarity=0.457 Sum_probs=47.1
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCc
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV 1062 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~ 1062 (1351)
++||| ++||+.|||+|||++||++||++||++||+||||+|+||+|.++
T Consensus 46 S~HGYDv~D~~~Vdp~lGt~edf~~LV~aaH~~Gm~VIlDiVpNH~g~d~ 95 (653)
T d1iv8a2 46 SNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVNS 95 (653)
T ss_dssp CSSCCSEEEEEEECTTTTHHHHHHHHHHHHHHTTCEEEEEECCSEEECCT
T ss_pred CCCCccccCccccchhcCCHHHHHHHHHHHHHCCCEEEEEECCCcccCCc
Confidence 57999 99999999999999999999999999999999999999999766
|
| >d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=1.6e-14 Score=139.20 Aligned_cols=97 Identities=26% Similarity=0.419 Sum_probs=77.9
Q ss_pred hhhccccceeecCC---cEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCc
Q psy9001 692 TSYNKYGIHVQADN---SVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASI 767 (1351)
Q Consensus 692 ~~y~~~G~~~~~~~---~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1351)
+.|+.+|+|.+..+ +++||+|||+|++|+|+|+ |+|
T Consensus 4 ~~y~~lGah~~~~~g~~Gv~FrvwAP~A~~V~l~gdfn~~---------------------------------------- 43 (110)
T d1m7xa1 4 RPYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYW---------------------------------------- 43 (110)
T ss_dssp CGGGTSEEEEEESSSCEEEEEEEECSSCSCEEEEEGGGTS----------------------------------------
T ss_pred chHHHcCCEEeecCCcceEEEEEECCCCCEEEEEEECCCC----------------------------------------
Confidence 57999999987532 3999999999999999995 553
Q ss_pred ccccccccccCCCCCCccccccc-c-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEE
Q psy9001 768 HIPELHKLLERDPYLNPYQYEMK-R-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFL 845 (1351)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~m~-~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 845 (1351)
+..+++|+ + +.|+| +++|++...| ..|+|+|+..+| ++.
T Consensus 44 ---------------~~~~~~m~~~~~~G~W--------------~~~i~~~~~G-------~~Y~y~v~~~~G---~~~ 84 (110)
T d1m7xa1 44 ---------------DGRRHPMRLRKESGIW--------------ELFIPGAHNG-------QLYKYEMIDANG---NLR 84 (110)
T ss_dssp ---------------CTTTCBCCCCTTTTEE--------------EEEEETCCTT-------CEEEEEEECTTS---CEE
T ss_pred ---------------CCceEEeEEecCCCcE--------------EEEecCCCCC-------CEEEEEEEcCCC---cEe
Confidence 11335674 3 48999 8888877665 678999998888 789
Q ss_pred EecCcceEEEecCCC-CCeeeee
Q psy9001 846 EQLSPWATYVTEPPV-VGHAYEQ 867 (1351)
Q Consensus 846 ~~~dPya~~v~~~~~-~~~~~d~ 867 (1351)
+++||||+++.+++. .|+|+|+
T Consensus 85 ~~~DPYA~~~e~~p~~aSvv~dl 107 (110)
T d1m7xa1 85 LKSDPYAFEAQMRPETASLICGL 107 (110)
T ss_dssp EECCTTCSSEECTTTCEEECCCC
T ss_pred EEcChhhcccccCCCCeEEEecC
Confidence 999999999998755 5788887
|
| >d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=1.3e-14 Score=139.81 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=71.5
Q ss_pred ceeEEE-----EEEEEEEeecCCCCccccceee-cCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcce
Q psy9001 68 AGLLCF-----MHVVCAAGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWAT 141 (1351)
Q Consensus 68 ~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k-~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~ 141 (1351)
.||+|+ |++|+|+||||+|+...++|.+ .+.|+|+++||++..| ..|+|+|++.+|++..++||||+
T Consensus 20 ~Gv~FrvwAP~A~~V~l~gdfn~~~~~~~~m~~~~~~G~W~~~i~~~~~G-------~~Y~y~v~~~~G~~~~~~DPYA~ 92 (110)
T d1m7xa1 20 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNG-------QLYKYEMIDANGNLRLKSDPYAF 92 (110)
T ss_dssp EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCTTTTEEEEEEETCCTT-------CEEEEEEECTTSCEEEECCTTCS
T ss_pred ceEEEEEECCCCCEEEEEEECCCCCCceEEeEEecCCCcEEEEecCCCCC-------CEEEEEEEcCCCcEeEEcChhhc
Confidence 689999 9999999999999999999986 5689999999988765 69999999999999999999999
Q ss_pred EEecCCC-Ccccee
Q psy9001 142 YVTEPPV-VGHAYE 154 (1351)
Q Consensus 142 ~~~~~~~-~~~~~~ 154 (1351)
+++.+|. +|+|+|
T Consensus 93 ~~e~~p~~aSvv~d 106 (110)
T d1m7xa1 93 EAQMRPETASLICG 106 (110)
T ss_dssp SEECTTTCEEECCC
T ss_pred ccccCCCCeEEEec
Confidence 9999987 456554
|
| >d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.25 E-value=2.6e-12 Score=124.48 Aligned_cols=102 Identities=23% Similarity=0.185 Sum_probs=74.5
Q ss_pred hccccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccc
Q psy9001 694 YNKYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELH 773 (1351)
Q Consensus 694 y~~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (1351)
--.||++++++| +.|++|||+|++|.|++|+.. ..
T Consensus 7 ~~~lGa~~~~~g-~~F~lwAP~A~~V~L~l~~~~-------------------------~~------------------- 41 (115)
T d2fhfa1 7 ALSYGAQLTDSG-VTFRVWAPTAQQVELVIYSAD-------------------------KK------------------- 41 (115)
T ss_dssp TSCCEEEEETTE-EEEEEECTTCSEEEEEEECTT-------------------------CC-------------------
T ss_pred ccCCCeEEeCCc-EEEEEECCCCCEEEEEEECCC-------------------------CC-------------------
Confidence 346899999877 999999999999999995320 00
Q ss_pred ccccCCCCCCcccccc-cc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCC--ceeeEEEecC
Q psy9001 774 KLLERDPYLNPYQYEM-KR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYG--LMVNFLEQLS 849 (1351)
Q Consensus 774 ~~~~~~~~~~~~~~~m-~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~--~~~~~~~~~d 849 (1351)
......| .+ +.|+| ++.|+++.+| ..|.|+|+...+ ...+..+.+|
T Consensus 42 ---------~~~~~~~~~~~~~GvW--------------~~~i~~~~~G-------~~Y~y~v~~~~~~~~~~~~~~~~D 91 (115)
T d2fhfa1 42 ---------VIASHPMTRDSASGAW--------------SWQGGSDLKG-------AFYRYAMTVYHPQSRKVEQYEVTD 91 (115)
T ss_dssp ---------EEEEEECEECTTTCEE--------------EEEECGGGTT-------CEEEEEEEEEETTTTEEEEEEECC
T ss_pred ---------ccceeeeeEcCCCCEE--------------EEEECCCCCC-------CEEEEEEEcccccccCCcceEecc
Confidence 0011233 33 47999 8888887776 556888875432 1124678899
Q ss_pred cceEEEecCCCCCeeeeeeee
Q psy9001 850 PWATYVTEPPVVGHAYEQRIW 870 (1351)
Q Consensus 850 Pya~~v~~~~~~~~~~d~~~~ 870 (1351)
||||++++|+.+|+|+|....
T Consensus 92 PYA~a~~~~~~~s~vvD~~~~ 112 (115)
T d2fhfa1 92 PYAHSLSTNSEYSQVVDLNDS 112 (115)
T ss_dssp TTCSCBCGGGSSEECBCTTCG
T ss_pred eeeEEEccCCCceEEEeCCcC
Confidence 999999999999999998543
|
| >d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Probab=98.98 E-value=3.2e-11 Score=111.65 Aligned_cols=84 Identities=20% Similarity=0.347 Sum_probs=63.0
Q ss_pred ccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcccccccccc
Q psy9001 697 YGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKLL 776 (1351)
Q Consensus 697 ~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (1351)
||+++.++| ++||+|||+|++|.|++++.
T Consensus 2 ~Ga~~~~~g-v~FrvwAP~A~~V~l~~~~~-------------------------------------------------- 30 (90)
T d1eh9a1 2 FAYKIDGNE-VIFTLWAPYQKSVKLKVLEK-------------------------------------------------- 30 (90)
T ss_dssp CSCCBSSSC-EECCEECTTCSCCBCCCSSS--------------------------------------------------
T ss_pred cceEEeCCC-EEEEEECCCCCEEEEEeecC--------------------------------------------------
Confidence 899998887 99999999999999998321
Q ss_pred cCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEEE
Q psy9001 777 ERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYV 855 (1351)
Q Consensus 777 ~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v 855 (1351)
..++|++ +.|+| ++++++...| ..|+|+| .++ .++.||||++.
T Consensus 31 --------~~~~m~~~~~G~W--------------~~~v~~~~~G-------~~Y~y~v--~~~-----~~~~DP~s~~~ 74 (90)
T d1eh9a1 31 --------GLYEMERDEKGYF--------------TITLNNVKVR-------DRYKYVL--DDA-----SEIPDPASRYQ 74 (90)
T ss_dssp --------CCCCCCCCTTSEE--------------CCEESSCCSC-------CEECEEC--TTS-----CEECCTTCSCC
T ss_pred --------CcccceeCCCCEE--------------EEEeCCCCCC-------ceeEEEE--eCC-----cCcCCccHhcC
Confidence 2256765 59999 8889887666 5678888 233 46789999985
Q ss_pred ecC-CCCCeeeee
Q psy9001 856 TEP-PVVGHAYEQ 867 (1351)
Q Consensus 856 ~~~-~~~~~~~d~ 867 (1351)
..+ ...|+|+|.
T Consensus 75 ~~~~~g~S~Vvd~ 87 (90)
T d1eh9a1 75 PEGVHGPSQIIQE 87 (90)
T ss_dssp TTCSSSCEECCCC
T ss_pred CCCCCCceEEeCC
Confidence 433 224677776
|
| >d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N species: Deinococcus radiodurans [TaxId: 1299]
Probab=98.78 E-value=2.5e-09 Score=100.00 Aligned_cols=87 Identities=13% Similarity=0.221 Sum_probs=63.2
Q ss_pred hhhccccceeecCC-cEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcccc
Q psy9001 692 TSYNKYGIHVQADN-SVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIP 770 (1351)
Q Consensus 692 ~~y~~~G~~~~~~~-~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (1351)
+-|..+|+|..+++ +|+||+|||.|++|.|.++.
T Consensus 7 dp~~~lGa~~~~~~~g~~FrvwAP~A~~V~l~~~~--------------------------------------------- 41 (97)
T d2bhua1 7 DPRTRLGATPLPGGAGTRFRLWTSTARTVAVRVNG--------------------------------------------- 41 (97)
T ss_dssp CGGGCSEEEECGGGCCEEEEEECSSCSSEEEEETT---------------------------------------------
T ss_pred CCccccCCeEeCCCCeEEEEEECCCCCEeEEEeeC---------------------------------------------
Confidence 35678999987653 49999999999999999931
Q ss_pred cccccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecC
Q psy9001 771 ELHKLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLS 849 (1351)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~d 849 (1351)
..++|++ +.|.| +++++.. . |..|+|+| +| .++.|
T Consensus 42 --------------~~~~m~~~~~G~w--------------~~~~~~~-~-------G~~Y~y~v---dg-----~~~~D 77 (97)
T d2bhua1 42 --------------TEHVMTSLGGGIY--------------ELELPVG-P-------GARYLFVL---DG-----VPTPD 77 (97)
T ss_dssp --------------EEEECEEEETTEE--------------EEEESCC-T-------TCEEEEEE---TT-----EEECC
T ss_pred --------------CccCCEEccCEEE--------------EEEcCCC-C-------CCEEEEEE---CC-----eEccC
Confidence 1256866 48999 7777632 3 46679988 67 36789
Q ss_pred cceEEEecC-CCCCeeeee
Q psy9001 850 PWATYVTEP-PVVGHAYEQ 867 (1351)
Q Consensus 850 Pya~~v~~~-~~~~~~~d~ 867 (1351)
|||++.... ...|+|+|.
T Consensus 78 Pyar~~~~~v~g~S~vvDp 96 (97)
T d2bhua1 78 PYARFLPDGVHGEAEVVDF 96 (97)
T ss_dssp TTCSCCTTCTTSCEECCCT
T ss_pred CchhcCCCCCCCCeEEeCC
Confidence 999996532 125777764
|
| >d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Isoamylase, N-terminal domain N species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=98.71 E-value=3.2e-09 Score=108.46 Aligned_cols=138 Identities=14% Similarity=0.085 Sum_probs=93.6
Q ss_pred ccccceeecCCc-EEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccc
Q psy9001 695 NKYGIHVQADNS-VRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELH 773 (1351)
Q Consensus 695 ~~~G~~~~~~~~-~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (1351)
..+|++++++|. ++|++|||+|++|.|++|.. ..
T Consensus 5 ~~LGa~~~~~g~~v~F~vwAp~A~~V~L~ly~~-------------------------~~-------------------- 39 (162)
T d1bf2a1 5 MSLGASYDAQQANITFRVYSSQATRIVLYLYSA-------------------------GY-------------------- 39 (162)
T ss_dssp TCCEEEECTTSSEEEEEEECSSCSEEEEEEESS-------------------------SS--------------------
T ss_pred cCCccEEeCCCeeEEEEEECCCCCEEEEEEEcC-------------------------CC--------------------
Confidence 368999999884 68999999999999999521 00
Q ss_pred ccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcce
Q psy9001 774 KLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWA 852 (1351)
Q Consensus 774 ~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya 852 (1351)
... ....++|++ ..|+| .++++....+..++.+|..|.|++. | .+....+||+
T Consensus 40 ---~~~---~~~~~~l~~~~~gvW--------------~~~v~~~~~~~~g~~~G~~Y~yrv~---G---p~~p~~~~~~ 93 (162)
T d1bf2a1 40 ---GVQ---ESATYTLSPAGSGVW--------------AVTVPVSSIKAAGITGAVYYGYRAW---G---PNWPYASNWG 93 (162)
T ss_dssp ---SCC---CSEEEECEECSTTEE--------------EEEEEHHHHHHTTCCSCCEEEEEEE---B---TTBCCCTTCC
T ss_pred ---CCc---ceeEEEcccccccEE--------------EEEecccccccccCCCCcEEEEEEc---c---ccCccccccc
Confidence 000 113467855 58999 6666644444445566788899984 4 3567899999
Q ss_pred EEEecCCCCCeeeeeeeeCCCCC--CCCccccCCCCCCCCceEEEeecCCccc
Q psy9001 853 TYVTEPPVVGHAYEQRIWNPKPQ--DKHKWTSSKPKKPENLKIYESHVGICTQ 903 (1351)
Q Consensus 853 ~~v~~~~~~~~~~d~~~~~p~~~--~~~~w~~~~p~~p~d~iIYE~HV~~~s~ 903 (1351)
++...+...++..++..++|.+- ++|.-.-.......++++++.+.++.+.
T Consensus 94 ~~~~~~~~~~~~~~g~rfnp~~~llDPyak~i~~~~~~~~~~~~~~~~~~~s~ 146 (162)
T d1bf2a1 94 KGSQAGFVSDVDANGDRFNPNKLLLDPYAQEVSQDPLNPSNQNGNVFASGASY 146 (162)
T ss_dssp TTCCTTCCCSSCTTCCCCCTTSCBCCTTCSCBSCCSSCSSCCCGGGGBCSTTT
T ss_pred ccccccccccccccceeeChhheecccchhhcCCCcCCchhhccccccccCCC
Confidence 99999998888889988988641 3332211111122466777777776653
|
| >d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.69 E-value=2.5e-09 Score=103.12 Aligned_cols=87 Identities=9% Similarity=0.069 Sum_probs=65.1
Q ss_pred ccccccCceeEEE-----EEEEEEEe-ecCCCCcccccee-ecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecC----
Q psy9001 61 LVDECHKAGLLCF-----MHVVCAAG-DFNNWNREEFAYK-KLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQH---- 129 (1351)
Q Consensus 61 l~~~~~~~gv~F~-----A~~V~LvG-DFN~Wd~~~~~M~-k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~---- 129 (1351)
++.....+||+|+ |++|.|+. |.+++.....+|. +..+|+|+++|++..+| .+|+|+|+..+
T Consensus 10 lGa~~~~~g~~F~lwAP~A~~V~L~l~~~~~~~~~~~~~~~~~~~GvW~~~i~~~~~G-------~~Y~y~v~~~~~~~~ 82 (115)
T d2fhfa1 10 YGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGGSDLKG-------AFYRYAMTVYHPQSR 82 (115)
T ss_dssp CEEEEETTEEEEEEECTTCSEEEEEEECTTCCEEEEEECEECTTTCEEEEEECGGGTT-------CEEEEEEEEEETTTT
T ss_pred CCeEEeCCcEEEEEECCCCCEEEEEEECCCCCccceeeeeEcCCCCEEEEEECCCCCC-------CEEEEEEEccccccc
Confidence 3556788999999 99999864 4444433444554 45679999999987655 69999998543
Q ss_pred -CceeeccCCcceEEecCCCCcccee
Q psy9001 130 -GHLLDRLSPWATYVTEPPVVGHAYE 154 (1351)
Q Consensus 130 -g~~~~~~DPyA~~~~~~~~~~~~~~ 154 (1351)
+...+++||||+++..+...|+++|
T Consensus 83 ~~~~~~~~DPYA~a~~~~~~~s~vvD 108 (115)
T d2fhfa1 83 KVEQYEVTDPYAHSLSTNSEYSQVVD 108 (115)
T ss_dssp EEEEEEECCTTCSCBCGGGSSEECBC
T ss_pred CCcceEecceeeEEEccCCCceEEEe
Confidence 3445789999999998887777765
|
| >d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Probab=98.55 E-value=3.2e-09 Score=97.96 Aligned_cols=75 Identities=11% Similarity=0.047 Sum_probs=58.4
Q ss_pred cccCceeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCC
Q psy9001 64 ECHKAGLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSP 138 (1351)
Q Consensus 64 ~~~~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DP 138 (1351)
..+++||+|+ |++|.|+++. +..++|++.++|+|++++|++..| ..|+|+|. ++ ..+.||
T Consensus 5 ~~~~~gv~FrvwAP~A~~V~l~~~~----~~~~~m~~~~~G~W~~~v~~~~~G-------~~Y~y~v~--~~--~~~~DP 69 (90)
T d1eh9a1 5 KIDGNEVIFTLWAPYQKSVKLKVLE----KGLYEMERDEKGYFTITLNNVKVR-------DRYKYVLD--DA--SEIPDP 69 (90)
T ss_dssp CBSSSCEECCEECTTCSCCBCCCSS----SCCCCCCCCTTSEECCEESSCCSC-------CEECEECT--TS--CEECCT
T ss_pred EEeCCCEEEEEECCCCCEEEEEeec----CCcccceeCCCCEEEEEeCCCCCC-------ceeEEEEe--CC--cCcCCc
Confidence 4567899999 9999998753 456899999999999999988765 69999994 23 357899
Q ss_pred cceEEecCCC-Cccce
Q psy9001 139 WATYVTEPPV-VGHAY 153 (1351)
Q Consensus 139 yA~~~~~~~~-~~~~~ 153 (1351)
||+.....+. .|+|+
T Consensus 70 ~s~~~~~~~~g~S~Vv 85 (90)
T d1eh9a1 70 ASRYQPEGVHGPSQII 85 (90)
T ss_dssp TCSCCTTCSSSCEECC
T ss_pred cHhcCCCCCCCceEEe
Confidence 9999766543 34444
|
| >d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N species: Deinococcus radiodurans [TaxId: 1299]
Probab=98.37 E-value=1.2e-07 Score=88.31 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=54.4
Q ss_pred cCceeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcc
Q psy9001 66 HKAGLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140 (1351)
Q Consensus 66 ~~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA 140 (1351)
..+||+|+ |++|.|++++ ..++|++.+.|+|++++| ...| ..|+|+| +|. .+.||||
T Consensus 19 ~~~g~~FrvwAP~A~~V~l~~~~-----~~~~m~~~~~G~w~~~~~-~~~G-------~~Y~y~v---dg~--~~~DPya 80 (97)
T d2bhua1 19 GGAGTRFRLWTSTARTVAVRVNG-----TEHVMTSLGGGIYELELP-VGPG-------ARYLFVL---DGV--PTPDPYA 80 (97)
T ss_dssp GGCCEEEEEECSSCSSEEEEETT-----EEEECEEEETTEEEEEES-CCTT-------CEEEEEE---TTE--EECCTTC
T ss_pred CCCeEEEEEECCCCCEeEEEeeC-----CccCCEEccCEEEEEEcC-CCCC-------CEEEEEE---CCe--EccCCch
Confidence 34689999 9999999864 357999998999999997 4444 6999999 454 5789999
Q ss_pred eEEecCCC-Cccce
Q psy9001 141 TYVTEPPV-VGHAY 153 (1351)
Q Consensus 141 ~~~~~~~~-~~~~~ 153 (1351)
+....... .|+++
T Consensus 81 r~~~~~v~g~S~vv 94 (97)
T d2bhua1 81 RFLPDGVHGEAEVV 94 (97)
T ss_dssp SCCTTCTTSCEECC
T ss_pred hcCCCCCCCCeEEe
Confidence 99765543 45554
|
| >d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Isoamylase, N-terminal domain N species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=97.61 E-value=2.9e-05 Score=78.54 Aligned_cols=76 Identities=8% Similarity=0.050 Sum_probs=48.0
Q ss_pred eeEEE-----EEEEEEEeecCCCCc---cccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcc
Q psy9001 69 GLLCF-----MHVVCAAGDFNNWNR---EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140 (1351)
Q Consensus 69 gv~F~-----A~~V~LvGDFN~Wd~---~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA 140 (1351)
+|+|+ |++|.|+.-.+.++. ..++|.+.++|+|++++|....+.-.+.+|.+|.|+|.++. ....|||+
T Consensus 17 ~v~F~vwAp~A~~V~L~ly~~~~~~~~~~~~~l~~~~~gvW~~~v~~~~~~~~g~~~G~~Y~yrv~Gp~---~p~~~~~~ 93 (162)
T d1bf2a1 17 NITFRVYSSQATRIVLYLYSAGYGVQESATYTLSPAGSGVWAVTVPVSSIKAAGITGAVYYGYRAWGPN---WPYASNWG 93 (162)
T ss_dssp EEEEEEECSSCSEEEEEEESSSSSCCCSEEEECEECSTTEEEEEEEHHHHHHTTCCSCCEEEEEEEBTT---BCCCTTCC
T ss_pred eEEEEEECCCCCEEEEEEEcCCCCCcceeEEEcccccccEEEEEecccccccccCCCCcEEEEEEcccc---Cccccccc
Confidence 45899 999999975555543 44889888899999999831000001234579999998542 23444554
Q ss_pred eEEecCC
Q psy9001 141 TYVTEPP 147 (1351)
Q Consensus 141 ~~~~~~~ 147 (1351)
+....+.
T Consensus 94 ~~~~~~~ 100 (162)
T d1bf2a1 94 KGSQAGF 100 (162)
T ss_dssp TTCCTTC
T ss_pred ccccccc
Confidence 4443333
|
| >d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: AMPK-beta glycogen binding domain-like domain: SIP2 species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=97.57 E-value=2.7e-05 Score=70.57 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=47.4
Q ss_pred eeEEE----EEEEEEEeecCCCCccccceee-cCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEE
Q psy9001 69 GLLCF----MHVVCAAGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYV 143 (1351)
Q Consensus 69 gv~F~----A~~V~LvGDFN~Wd~~~~~M~k-~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~ 143 (1351)
.|+|+ |++|+|+|+||+|++...+|+. ..+|+|++.++. .+|. .+|||.| ||+ ++.||-+..+
T Consensus 5 pv~f~w~~~g~~V~v~GsFn~W~~~~~~~~~~~~~g~~~~~l~l-~~G~------y~YKFiV---DG~--w~~d~~~p~~ 72 (87)
T d2qlvb1 5 PVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRL-LPGT------HRFRFIV---DNE--LRVSDFLPTA 72 (87)
T ss_dssp EEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEE-CSEE------EEEEEEE---TTE--EECCTTSCEE
T ss_pred EEEEEECCCCeEEEEEEEecCcCcccccccccCCCccEEEEEeC-CCCC------EEEEEEE---CCc--EEcCCCCCee
Confidence 47888 8999999999999987655554 458999999954 3453 4677776 565 5779987754
|
| >d1ji1a2 b.71.1.1 (A:555-637) Maltogenic amylase {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Maltogenic amylase species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
Probab=97.36 E-value=0.00018 Score=64.32 Aligned_cols=73 Identities=8% Similarity=0.214 Sum_probs=46.1
Q ss_pred ecCCCcEEEEEeC----ceEEEEeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEccCCCCccC
Q psy9001 526 KHEGDKVIIFERA----GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFG 601 (1351)
Q Consensus 526 ~~~~~~Vlaf~R~----~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vlnsD~~~yg 601 (1351)
.++++++++|.|. .++|++|++..+.....+ ....+.+..+.|+.+++.+
T Consensus 7 ad~~~~v~ay~R~~~~e~vlV~~N~s~~~~~v~l~---------------------~~~~~~~~~~~~~dll~g~----- 60 (83)
T d1ji1a2 7 TDDTNKIYSYGRFDNVNRIAVVLNNDSVSHTVNVP---------------------VWQLSMPNGSTVTDKITGH----- 60 (83)
T ss_dssp EETTTTEEEEEEECSSCEEEEEEECSSSCEEEEEC---------------------GGGGTCCTTCEEEETTTCC-----
T ss_pred ecCCCCEEEEEEEcCCcEEEEEEeCCCCCEEEEec---------------------ccccccccCcEEEEccCCC-----
Confidence 4456789999996 799999998772221111 0012333445687777421
Q ss_pred cccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEE
Q psy9001 602 GFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTT 640 (1351)
Q Consensus 602 G~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~ 640 (1351)
.+.. ..++|+|+|||++++||.+
T Consensus 61 ---------~~~v-------~~G~l~ltlpp~s~~vL~k 83 (83)
T d1ji1a2 61 ---------SYTV-------QNGMVTVAVDGHYGAVLAQ 83 (83)
T ss_dssp ---------EEEC-------BTTBEEEEECTTEEEEEEC
T ss_pred ---------EEEE-------ECCEEEEEECCCEEEEEEC
Confidence 1111 2235999999999999963
|
| >d1wzla2 b.71.1.1 (A:503-585) Maltogenic amylase {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Maltogenic amylase species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=97.18 E-value=0.00033 Score=62.50 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=20.9
Q ss_pred eecCCCcEEEEEeC----ceEEEEeCCCC
Q psy9001 525 TKHEGDKVIIFERA----GLLFAFNFNGT 549 (1351)
Q Consensus 525 ~~~~~~~Vlaf~R~----~ll~v~Nf~~~ 549 (1351)
..+++.+|+||.|. .++||+|++..
T Consensus 7 ~ad~~~~v~af~R~~~~e~vlVv~N~s~~ 35 (83)
T d1wzla2 7 HADKQANLYAFVRTVQDQHVGVVLNNRGE 35 (83)
T ss_dssp EEETTTTEEEEEEEETTEEEEEEEECSSS
T ss_pred EECCCCCEEEEEEECCCCEEEEEEECCCc
Confidence 34556789999996 79999999986
|
| >d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: AMPK-beta glycogen binding domain-like domain: 5'-AMP-activated protein kinase subunit beta-1 species: Rattus norvegicus [TaxId: 10116]
Probab=97.17 E-value=0.0001 Score=66.74 Aligned_cols=60 Identities=25% Similarity=0.423 Sum_probs=44.3
Q ss_pred eeEEE----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEE
Q psy9001 69 GLLCF----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYV 143 (1351)
Q Consensus 69 gv~F~----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~ 143 (1351)
.|+|+ |++|+|+|+||+|++ .+|.+ .+|.|++.|+ +.+|. .+|||.| ||+ ++.||-...+
T Consensus 3 P~~f~w~~~a~~V~v~Gsfn~W~~--~~~~~-~~g~~~~tl~-L~~G~------y~YKFiV---DG~--w~~d~~~~~~ 66 (87)
T d1z0na1 3 PTVFRWTGGGKEVYLSGSFNNWSK--LPMTR-SQNNFVAILD-LPEGE------HQYKFFV---DGQ--WTHDPSEPIV 66 (87)
T ss_dssp EEEEEECSCCSCEEEEEGGGTTCC--EECEE-ETTEEEEEEE-ECSEE------EEEEEEE---TTE--EECCTTSCEE
T ss_pred CEEEEEcCCCEEEEEEEEeCCCCc--ccccc-CCCcEEEEEE-CCCce------EEEEEEE---CCE--EEeCCCCCee
Confidence 57888 999999999999974 46655 4689999995 55663 5677776 575 5667755443
|
| >d1ea9c2 b.71.1.1 (C:504-583) Maltogenic amylase {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Maltogenic amylase species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Probab=97.10 E-value=0.00015 Score=64.35 Aligned_cols=66 Identities=14% Similarity=0.263 Sum_probs=45.7
Q ss_pred CCCcEEEEEeC----ceEEEEeCCCCCcccccccccccCcccccccccccccccceEeeeccC-CceEEEccCCCCccCc
Q psy9001 528 EGDKVIIFERA----GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQA-GKYKVVLDSDCSHFGG 602 (1351)
Q Consensus 528 ~~~~Vlaf~R~----~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-g~~~~vlnsD~~~ygG 602 (1351)
++.+++||.|. ++|||+|++.. .+ . |.+|.. ++|+.+++...
T Consensus 9 ~d~~v~ay~R~~~~e~vlVv~N~S~~-~~---t------------------------v~lp~~~~~~~~l~~g~~----- 55 (80)
T d1ea9c2 9 KNSRQIAYLREDDQDTILVVMNNDKA-GH---T------------------------LTLPVRHAQWTHLWQDDV----- 55 (80)
T ss_dssp SSCCEEEEEEECSSCEEEEEEECSSS-CE---E------------------------EEEECCSSSCCEEBSTTC-----
T ss_pred CCCCEEEEEEecCCCEEEEEEECCCC-CE---E------------------------EEecCCCCeEEEeecCce-----
Confidence 45679999997 89999999987 22 1 556644 57888875211
Q ss_pred ccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEECC
Q psy9001 603 FNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTTSP 642 (1351)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~~~ 642 (1351)
+.. ..+.++|+|||.+++||+-..
T Consensus 56 ---------~~~-------~~~~~tltLpp~~~~il~a~~ 79 (80)
T d1ea9c2 56 ---------LTA-------AHGQLTVKLPAYGFAVLKASS 79 (80)
T ss_dssp ---------CEE-------CCCSSEEEEEECSSCCCEECC
T ss_pred ---------eec-------cCCcEEEEECCccEEEEEEeC
Confidence 111 112367999999999998753
|
| >d1j0ha2 b.71.1.1 (A:506-588) Neopullulanase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Neopullulanase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.61 E-value=0.0013 Score=58.24 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=19.5
Q ss_pred cCCCcEEEEEeC----ceEEEEeCCCC
Q psy9001 527 HEGDKVIIFERA----GLLFAFNFNGT 549 (1351)
Q Consensus 527 ~~~~~Vlaf~R~----~ll~v~Nf~~~ 549 (1351)
+++.+|+||.|. ++|||+|||..
T Consensus 9 ~d~~~v~ay~R~~~~~~vLVv~N~S~~ 35 (83)
T d1j0ha2 9 DDEMNYLIYKKTDGDETVLVIINRSDQ 35 (83)
T ss_dssp SCTTTEEEEEEECSSCEEEEEEECSSS
T ss_pred CCCCCEEEEEEECCCCEEEEEEeCCCC
Confidence 344579999996 89999999987
|
| >d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: YicI catalytic domain-like domain: Alpha-galactosidase GalA catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.18 E-value=0.0048 Score=69.02 Aligned_cols=89 Identities=11% Similarity=0.071 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCC---CCCCCC--CccCCCCCHHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRG---THPLWD--SRLFNYSEIEVLRFLLSNL 395 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~---~~~~w~--~~~ln~~~p~v~~~l~~~l 395 (1351)
.+|.|++.+|++||++.|-+.+......+... .. .+.|....... ....|. ...+|+.+|++++++.+.+
T Consensus 62 glk~l~~~~h~~G~k~gl~~~p~~~~~~s~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~lD~~~p~~~~~~~~~~ 136 (348)
T d1zy9a2 62 SVEEMAKVIAENGFIPGIWTAPFSVSETSDVF----NE-HPDWVVKENGEPKMAYRNWNKKIYALDLSKDEVLNWLFDLF 136 (348)
T ss_dssp CHHHHHHHHHHTTCEEEEEECTTEEETTCHHH----HH-CGGGBCEETTEECEEEEETTEEEEEBCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEeeeccccCCcHHH----Hh-CccceeccCCCCccccccCCCCeeccCCCcHHHHHHHHHHH
Confidence 58999999999999999998776655432110 00 01121111100 011222 2468999999999999999
Q ss_pred HHHHHHcCCCcccccccccc
Q psy9001 396 RWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~~~ 415 (1351)
+.+. ++|||+|.+|.....
T Consensus 137 ~~~~-~~Gvd~~K~D~~~~~ 155 (348)
T d1zy9a2 137 SSLR-KMGYRYFKIDFLFAG 155 (348)
T ss_dssp HHHH-HTTCCEEEECCGGGG
T ss_pred HHHH-hcCCCEEEeCCCCCc
Confidence 9866 599999999976543
|
| >d1uoka1 b.71.1.1 (A:480-558) Oligo-1,6-glucosidase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Oligo-1,6-glucosidase species: Bacillus cereus [TaxId: 1396]
Probab=95.98 E-value=0.0066 Score=53.01 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=23.2
Q ss_pred ceEeecCCCcEEEEEeC----ceEEEEeCCCC
Q psy9001 522 YVSTKHEGDKVIIFERA----GLLFAFNFNGT 549 (1351)
Q Consensus 522 ~~~~~~~~~~Vlaf~R~----~ll~v~Nf~~~ 549 (1351)
|..+..++++|+||.|. ++|||+|||..
T Consensus 3 ~~~l~~~~~~V~aY~R~~~~~~~lVv~NfS~~ 34 (79)
T d1uoka1 3 YDLILENNPSIFAYVRTYGVEKLLVIANFTAE 34 (79)
T ss_dssp EEEESTTCSSEEEEEEEETTEEEEEEEECSSS
T ss_pred eEEccCCCCcEEEEEEECCCcEEEEEEeCCCC
Confidence 45555667789999997 89999999987
|
| >d1m53a1 b.71.1.1 (A:521-598) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Probab=95.80 E-value=0.013 Score=51.03 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=23.0
Q ss_pred ceEeecCCCcEEEEEeC----ceEEEEeCCCC
Q psy9001 522 YVSTKHEGDKVIIFERA----GLLFAFNFNGT 549 (1351)
Q Consensus 522 ~~~~~~~~~~Vlaf~R~----~ll~v~Nf~~~ 549 (1351)
+..+..++++|+||.|. ++|||+|||+.
T Consensus 3 y~~l~~~~~~v~aY~R~~~~~~~lVv~NfS~~ 34 (78)
T d1m53a1 3 YQDLNPQDNTVYAYTRTLGNERYLVVVNFKEY 34 (78)
T ss_dssp EEESCTTCSSEEEEEEEETTEEEEEEEECSSS
T ss_pred eEEccCCCCcEEEEEEEcCCeEEEEEEeCCCC
Confidence 44555567789999997 89999999987
|
| >d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: YicI catalytic domain-like domain: Alpha-galactosidase GalA catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.70 E-value=0.0084 Score=66.94 Aligned_cols=89 Identities=12% Similarity=0.105 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCC---CCCCC--CCCCCCCCHHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~---~~~w~--~~dlN~~np~Vr~~lid~l 1108 (1351)
++|.|++.+|++||++.+-+.+...+..... .. ..+.|......+. ...|. ..-+|+.+|++++++.+.+
T Consensus 62 glk~l~~~~h~~G~k~gl~~~p~~~~~~s~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~~p~~~~~~~~~~ 136 (348)
T d1zy9a2 62 SVEEMAKVIAENGFIPGIWTAPFSVSETSDV-FN----EHPDWVVKENGEPKMAYRNWNKKIYALDLSKDEVLNWLFDLF 136 (348)
T ss_dssp CHHHHHHHHHHTTCEEEEEECTTEEETTCHH-HH----HCGGGBCEETTEECEEEEETTEEEEEBCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEeeeccccCCcHH-HH----hCccceeccCCCCccccccCCCCeeccCCCcHHHHHHHHHHH
Confidence 5899999999999999999877655443310 00 0112222111110 11222 2258999999999999999
Q ss_pred HHHHHHhCCCeEEEcCcccc
Q psy9001 1109 RWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~~m 1128 (1351)
+.+. ++|||+|.+|.....
T Consensus 137 ~~~~-~~Gvd~~K~D~~~~~ 155 (348)
T d1zy9a2 137 SSLR-KMGYRYFKIDFLFAG 155 (348)
T ss_dssp HHHH-HTTCCEEEECCGGGG
T ss_pred HHHH-hcCCCEEEeCCCCCc
Confidence 9865 689999999988654
|
| >d1g5aa1 b.71.1.1 (A:555-628) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Probab=94.87 E-value=0.026 Score=48.84 Aligned_cols=27 Identities=22% Similarity=0.237 Sum_probs=22.7
Q ss_pred EeecCCCcEEEEEeC-ceEEEEeCCCCC
Q psy9001 524 STKHEGDKVIIFERA-GLLFAFNFNGTQ 550 (1351)
Q Consensus 524 ~~~~~~~~Vlaf~R~-~ll~v~Nf~~~~ 550 (1351)
.+..++++|++|.|. +++||+|||..+
T Consensus 4 ~l~~~N~~vlaf~R~~~ilvi~NfS~~~ 31 (74)
T d1g5aa1 4 TFNTNNKHIIGYIRNNALLAFGNFSEYP 31 (74)
T ss_dssp ECCCSCTTEEEEEETTTEEEEEECSSSC
T ss_pred EecCCCCeEEEEEeCCeEEEEEeCCCCC
Confidence 345567899999998 899999999873
|
| >d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endocellulase E1 species: Acidothermus cellulolyticus [TaxId: 28049]
Probab=94.39 E-value=0.27 Score=53.44 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEe
Q psy9001 317 GTPEQLKYLVDECHKAGLYVLLDV 340 (1351)
Q Consensus 317 G~~~efk~LV~~~H~~GI~VILDv 340 (1351)
...+.|+++|+.|+++||+||||+
T Consensus 92 ~~~~~ld~~v~~a~~~Gl~Vildl 115 (358)
T d1ecea_ 92 TSLQVMDKIVAYAGQIGLRIILDR 115 (358)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHHHHHHHHCCCceeeec
Confidence 347889999999999999999998
|
| >d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Yeast (Candida albicans) [TaxId: 5476]
Probab=94.34 E-value=0.1 Score=58.75 Aligned_cols=110 Identities=16% Similarity=0.268 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHH
Q psy9001 317 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 396 (1351)
Q Consensus 317 G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~ 396 (1351)
+..+.|+++|+.|.++||+||||+ |.......+ ++ +.+..+ ...+.++.-++..++.++
T Consensus 105 ~~~~~ld~~i~~a~~~gl~VilDl---H~~pg~~~~---~~-------~~g~~~--------~~~~~~~~~~~~~~~~~~ 163 (394)
T d2pb1a1 105 GQVQYLEKALGWARKNNIRVWIDL---HGAPGSQNG---FD-------NSGLRD--------SYNFQNGDNTQVTLNVLN 163 (394)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEE---EECTTCSSC---CG-------GGSSTT--------CCCTTSTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCcEEEEEe---eccCCcccC---cC-------CcCccC--------ccccccHHHHHHHHHHHH
Confidence 346889999999999999999998 544432111 00 000000 112334455666777777
Q ss_pred HHHHHcCCCccc-----cccccccccccCCCCCCCCCCccccCCCccCc-hHHHHHHHHHHHHHhhCCCeEEEEE
Q psy9001 397 WYLDEYQFDGFR-----FDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT-DALIYLMVANKFLHDKYPEIITIAE 465 (1351)
Q Consensus 397 ~W~~e~~vDGfR-----~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~f~~~~~~~v~~~~P~~~~iaE 465 (1351)
..+++|.-...+ +|+..+ . .....+. .-..|.+.+.++||+..|+..++-.
T Consensus 164 ~ia~~~~~~~~~~~v~g~el~NE----------P--------~~~~~~~~~~~~~~~~~~~~IR~~~~~~~I~i~ 220 (394)
T d2pb1a1 164 TIFKKYGGNEYSDVVIGIELLNE----------P--------LGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIH 220 (394)
T ss_dssp HHHHHHSSGGGTTTEEEEESCSC----------C--------CGGGSCHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHccCCCCCceEEEeeccc----------C--------CcccccHHHHHHHHHHHHHHHHHhCCCCeEEEc
Confidence 777776532211 122111 1 0111111 2357888999999999999866544
|
| >d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: YicI catalytic domain-like domain: Putative glucosidase YicI, domain 2 species: Escherichia coli [TaxId: 562]
Probab=94.21 E-value=0.022 Score=63.05 Aligned_cols=90 Identities=10% Similarity=0.208 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCC---CCCC--CCCCCCCCHHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~---~~w~--~~dlN~~np~Vr~~lid~l 1108 (1351)
|.+.||+++|++|++|++-+.+ |.+.++... . .+....|+.....+.. ..|. ..-+|+.||++++...+.+
T Consensus 80 dp~~~i~~l~~~G~~~~l~~~P-~i~~~~~~~-~--~~~~~g~~~~~~~g~~~~~~~~~~~~~~~D~tnp~a~~w~~~~~ 155 (338)
T d2f2ha4 80 DPEGMIRRLKAKGLKICVWINP-YIGQKSPVF-K--ELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKL 155 (338)
T ss_dssp CHHHHHHHHHHTTCEEEEEECS-EECTTSTTH-H--HHHHHTCBCBCTTSSBCCBSSSSTTBEEBCTTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCeEEEeecC-ccCCCChhH-H--HHHhCCEEEECCCCCceeeecCCCCccccccCCHHHHHHHHHHh
Confidence 5789999999999999999754 444433100 0 0011223333333321 1232 2368999999999999999
Q ss_pred HHHHHHhCCCeEEEcCcccc
Q psy9001 1109 RWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~~m 1128 (1351)
+..+ +.|||||-+|.-...
T Consensus 156 ~~~~-~~Gidg~w~D~~e~~ 174 (338)
T d2f2ha4 156 KGLV-AMGVDCFKTDFGERI 174 (338)
T ss_dssp HHHH-HTTCCEEEECCCCCC
T ss_pred hccc-ccCCceEEecCCCCC
Confidence 9866 579999999976533
|
| >d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: YicI catalytic domain-like domain: Putative glucosidase YicI, domain 2 species: Escherichia coli [TaxId: 562]
Probab=94.08 E-value=0.016 Score=64.18 Aligned_cols=89 Identities=10% Similarity=0.190 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCC---CCCC--CccCCCCCHHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSNL 395 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~---~~w~--~~~ln~~~p~v~~~l~~~l 395 (1351)
+.++||+++|++|++|++-+.+ |.+.++.... .+....|+...+.+.. ..|. ...+|+.||++++++.+.+
T Consensus 80 dp~~~i~~l~~~G~~~~l~~~P-~i~~~~~~~~---~~~~~g~~~~~~~g~~~~~~~~~~~~~~~D~tnp~a~~w~~~~~ 155 (338)
T d2f2ha4 80 DPEGMIRRLKAKGLKICVWINP-YIGQKSPVFK---ELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKL 155 (338)
T ss_dssp CHHHHHHHHHHTTCEEEEEECS-EECTTSTTHH---HHHHHTCBCBCTTSSBCCBSSSSTTBEEBCTTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCeEEEeecC-ccCCCChhHH---HHHhCCEEEECCCCCceeeecCCCCccccccCCHHHHHHHHHHh
Confidence 4789999999999999999765 4444321100 0011123333333221 2232 2468999999999999999
Q ss_pred HHHHHHcCCCccccccccc
Q psy9001 396 RWYLDEYQFDGFRFDGVTS 414 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~~ 414 (1351)
+..++ .|||||-+|....
T Consensus 156 ~~~~~-~Gidg~w~D~~e~ 173 (338)
T d2f2ha4 156 KGLVA-MGVDCFKTDFGER 173 (338)
T ss_dssp HHHHH-TTCCEEEECCCCC
T ss_pred hcccc-cCCceEEecCCCC
Confidence 98765 8999999997653
|
| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Bacillus licheniformis [TaxId: 1402]
Probab=94.04 E-value=0.24 Score=55.38 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 397 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~ 397 (1351)
..+.++++|+.||++||+||||+ |-+.. |. +. ........|.+ ....+..+.+.+-.+.
T Consensus 77 ~l~~~~~~~~~a~~~Gl~v~ldl---H~sd~--wa----dp--------~~q~~p~~w~~----~~~~~~~~~~~~~~~~ 135 (387)
T d1ur4a_ 77 DLEKAIQIGKRATANGMKLLADF---HYSDF--WA----DP--------AKQKAPKAWAN----LNFEDKKTALYQYTKQ 135 (387)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEE---CSSSS--CC----SS--------SCCCCCGGGTT----CCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCEEEEEe---CCCCC--Cc----CC--------CCCCCchhhhc----cchhHHHHHHHHHHHH
Confidence 47899999999999999999998 43321 10 00 01111123332 2334444445544455
Q ss_pred HHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchH-HHHHHHHHHHHHhhCCCeEEEE
Q psy9001 398 YLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDA-LIYLMVANKFLHDKYPEIITIA 464 (1351)
Q Consensus 398 W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~f~~~~~~~v~~~~P~~~~ia 464 (1351)
.+.++.-.|...++....- ....++. ...+.+. ..+++...++|++..|.+.++-
T Consensus 136 ~~~~~~~~~~~~~~~eigN----E~~~~~~--------~~~~~~~~~~ll~~~~~avr~~dp~~~vi~ 191 (387)
T d1ur4a_ 136 SLKAMKAAGIDIGMVQVGN----ETNGGLA--------GETDWAKMSQLFNAGSQAVRETDSNILVAL 191 (387)
T ss_dssp HHHHHHHTTCCEEEEEESS----SCSSCBT--------TBCCHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHhhcCCCccEEEEec----CCCcCcc--------CcCCHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 5555544555555443220 0001110 1112222 3678888999999999976653
|
| >d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase CelC species: Clostridium thermocellum [TaxId: 1515]
Probab=93.93 E-value=0.19 Score=54.95 Aligned_cols=103 Identities=12% Similarity=0.129 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 398 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W 398 (1351)
.+.|+++|+.|.++||+||||+ |....... .. . ....-+.++..++.+++..+..
T Consensus 68 ~~~ld~~v~~a~~~gi~vild~---H~~p~~~~-----~~-----~------------~~~~~~~~~~~~~~~~~~~~~l 122 (340)
T d1ceoa_ 68 LSYIDRCLEWCKKYNLGLVLDM---HHAPGYRF-----QD-----F------------KTSTLFEDPNQQKRFVDIWRFL 122 (340)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE---EECCC------------------------------CCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEEe---cCCCcccc-----cc-----c------------ccccccccHHHHHHHHHHHHHH
Confidence 5679999999999999999998 43322100 00 0 0012245678888888888888
Q ss_pred HHHcCCC-c-cccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEE
Q psy9001 399 LDEYQFD-G-FRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 465 (1351)
Q Consensus 399 ~~e~~vD-G-fR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE 465 (1351)
++.|+=. . +-+++.++. . . ....+-..+.+++.++||+..|+.+++.+
T Consensus 123 a~ry~~~p~v~~~el~NEP----------~--------~-~~~~~~~~~~~~~~~aIR~~dp~~~I~v~ 172 (340)
T d1ceoa_ 123 AKRYINEREHIAFELLNQV----------V--------E-PDSTRWNKLMLECIKAIREIDSTMWLYIG 172 (340)
T ss_dssp HHHTTTCCSSEEEECCSCC----------C--------C-SSSHHHHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred HHhcCCCCcEEEEeeeeec----------C--------C-CCHHHHHHHHHHHHHHHHhcCCCcEEEeC
Confidence 8876311 1 112222211 0 0 00112346788899999999999877655
|
| >d1edta_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Streptomyces plicatus, endoglycosidase H [TaxId: 1922]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Endo-beta-N-acetylglucosaminidase species: Streptomyces plicatus, endoglycosidase H [TaxId: 1922]
Probab=92.80 E-value=0.18 Score=53.78 Aligned_cols=64 Identities=22% Similarity=0.362 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 1111 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yW 1111 (1351)
..+++..|+.||++||||||=|==+|.+.. | -+..+++-|+.+++++.-.
T Consensus 64 ~~~~~~~i~~l~~~g~KvllsiGG~~~~~~---------------f---------------~~~~s~~~~~~Fa~~~~~~ 113 (265)
T d1edta_ 64 LDNAVTQIRPLQQQGIKVLLSVLGNHQGAG---------------F---------------ANFPSQQAASAFAKQLSDA 113 (265)
T ss_dssp HHTHHHHTHHHHHTTCEEEEEEEECTTSCC---------------T---------------TCCSSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCEEEEEEccCcCCCC---------------c---------------eecCCHHHHHHHHHHHHHH
Confidence 456778899999999999998732222111 0 1234678888888888889
Q ss_pred HHHhCCCeEEEcCc
Q psy9001 1112 LEEYQFDGFRFDGV 1125 (1351)
Q Consensus 1112 l~eygVDGFRfD~a 1125 (1351)
+++|++||+-||--
T Consensus 114 ~~~~~~DGiDiD~E 127 (265)
T d1edta_ 114 VAKYGLDGVDFDDE 127 (265)
T ss_dssp HHHHTCCEEEEECS
T ss_pred HHhcCCCceEeccc
Confidence 99999999999965
|
| >d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=92.12 E-value=0.23 Score=57.89 Aligned_cols=88 Identities=24% Similarity=0.397 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCEEEEEeec--cccccCCcCC---cccC---------CCCCCcCcccCCCCCCCCCCCccCCCCCHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVH--SHASKNVLDG---LNEF---------DGTQACFFHDGPRGTHPLWDSRLFNYSEIE 386 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~--NH~~~~~~~~---~~~f---------~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~ 386 (1351)
+++++-+.|+++||++|.|+-+ +|-+.+. |. +... .|..+.+|.. .| .+|+.+.+|+..-+
T Consensus 222 Q~~~~~~~A~~~Gi~L~gDlpi~V~~dsaDv-W~~~~lF~l~~~~~~~~~~GaPPD~Fs~--~G--Q~WG~P~y~w~~l~ 296 (523)
T d1x1na1 222 QWKKVRDYARSKGISIMGDMPIYVGYHSADV-WANKKQFLLNRKGFPLIVSGVPPDAFSE--TG--QLWGSPLYDWKAME 296 (523)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESSCCSSSHHH-HTCGGGBCBCTTSCBSEEEEBCCSSSSS--CC--BCCCCBCBCHHHHH
T ss_pred HHHHHHHHHHhhCCceEEeeeeeecCCchhh-hcCchhhhccccCCCccccCCCCCCCCc--cc--cccCCCCCCHHHHh
Confidence 5788889999999999999887 5544331 11 1111 2334455532 22 46876666653211
Q ss_pred --HHHHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 387 --VLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 387 --v~~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
-.+.+++-++.=++ ++|++|+|-+.-+
T Consensus 297 ~~gy~ww~~rlr~~~~--~~d~lRIDH~~Gf 325 (523)
T d1x1na1 297 KDGFSWWVRRIQRATD--LFDEFRIDHFRGF 325 (523)
T ss_dssp HTTSHHHHHHHHHHHH--HCSEEEEETGGGG
T ss_pred ccchHHHHHHHHHHHH--hCCeeeehhHHHH
Confidence 11446666666666 6899999976655
|
| >d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=91.70 E-value=0.24 Score=53.50 Aligned_cols=127 Identities=11% Similarity=0.083 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 398 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W 398 (1351)
.+.|+++|+.|.++||+||+|+...-....+.... ..+...... ........+.+|.+++.+.+.++..
T Consensus 81 l~~ld~~l~~a~~~Gi~vi~~l~~~~~~~~~~~~~-------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (370)
T d1rh9a1 81 FQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQY-------VEWAVQRGQ----KLTSDDDFFTNPMVKGFYKNNVKVV 149 (370)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCBSSSSSSBHHHH-------HHHHHHTTC----CCCCGGGGGTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEecccccccccCCccc-------ccccccCCC----cCCccccccCCHHHHHHHHHHHHHH
Confidence 68899999999999999999985321111100000 001111000 0112245677899999999999988
Q ss_pred HHHcCC-Cc--cccccccccccccCCCCCCCCCCccccCCCccCc-hHHHHHHHHHHHHHhhCCCeEEEEEc
Q psy9001 399 LDEYQF-DG--FRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT-DALIYLMVANKFLHDKYPEIITIAED 466 (1351)
Q Consensus 399 ~~e~~v-DG--fR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~f~~~~~~~v~~~~P~~~~iaE~ 466 (1351)
++.+.- .+ ++-+ ..++-.+-. ++.. .+...+. ....+++.+.+.+|+..|+..++.+.
T Consensus 150 v~r~~~~~~~~~~~~--~~v~~~~l~-NEp~-------~~~~~~~~~~~~~~~~~~~~ir~~dp~~~v~~~~ 211 (370)
T d1rh9a1 150 LTRVNTITKVAYKDD--PTILSWELI-NEPR-------CPSDLSGKTFQNWVLEMAGYLKSIDSNHLLEIGL 211 (370)
T ss_dssp HHCBCTTTCSBGGGC--TTEEEEESC-BSCC-------CTTCTTSHHHHHHHHHHHHHHHHHCCSSEEECCC
T ss_pred HHhhhhhhHhhhcCC--ceeeeeccc-cccc-------cCCccchHHHHHHHHHHHHHHHhhCCCCeEEEec
Confidence 874311 11 1100 011100000 0000 0111122 23467888999999999998777653
|
| >d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Aquifex aeolicus [TaxId: 63363]
Probab=91.24 E-value=0.2 Score=57.87 Aligned_cols=134 Identities=22% Similarity=0.334 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCC-cCC---cccCC---------CCCCcCcccCCCCCCCCCCCccCCCCCHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNV-LDG---LNEFD---------GTQACFFHDGPRGTHPLWDSRLFNYSEIEV 387 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~-~~~---~~~f~---------g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v 387 (1351)
+++++.+.|+++||++|.|+-+.=..... -|. +...+ |..+.+|.. .| .+|+.+.+|...-+-
T Consensus 188 Q~~~~~~~a~~~gI~L~gDLpigv~~dsaDvW~~~~lF~l~~~~~~~~~~GaPPD~Fs~--~G--Q~WG~P~y~w~~l~~ 263 (485)
T d1tz7a1 188 QWEKLRRYARERGISIVGDLPMYPSYSSADVWTNPELFKLDGDLKPLFVAGVPPDFFSK--TG--QLWGNPVYNWEEHEK 263 (485)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSCCSSSHHHHHCGGGBCBCTTSCBSEEEEECCCSSSS--SC--EEEEEECBCHHHHHH
T ss_pred HHHHHHHHHHhcCCeeeeeccccCCCChhhhhcCHHHhhcCCccCcceeecCCCCCCCc--cc--ccCCCCCcCHHHHhh
Confidence 47778888999999999999875332211 111 11112 334455532 22 346655555421111
Q ss_pred --HHHHHHHHHHHHHHcCCCccccccccccccc---cCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEE
Q psy9001 388 --LRFLLSNLRWYLDEYQFDGFRFDGVTSMLYH---NHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 462 (1351)
Q Consensus 388 --~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~ 462 (1351)
.+.+++-+++=++ ..|++|+|-+.-+.+. ..+......+.+ +.....++++ ++.+..++..+
T Consensus 264 ~gy~ww~~rl~~~~~--~~d~lRIDH~~Gf~r~W~iP~g~~~a~~G~~-------v~~p~~~l~~----~l~~~~~~~~i 330 (485)
T d1tz7a1 264 EGFRWWIRRVLHNLK--LFDFLRLDHFRGFEAYWEVPYGEETAVNGRW-------VKAPGKTLFK----KLLSYFPKNPF 330 (485)
T ss_dssp TTTHHHHHHHHHHHT--TCSEEEETTGGGGTEEEEEETTCSSSTTCEE-------EECCHHHHHH----HHHHHSTTCCE
T ss_pred cCcHHHHHHHHHHHH--hcchHHHHHHHHHHHhhcccCCCCCcccccc-------cccCHHHHHH----HHHHHcCCCce
Confidence 1346666666555 7899999976654221 111111111111 1112333443 44567788999
Q ss_pred EEEcCCCCC
Q psy9001 463 IAEDVSGMP 471 (1351)
Q Consensus 463 iaE~~~~~p 471 (1351)
|||+..-.|
T Consensus 331 igEDLG~vp 339 (485)
T d1tz7a1 331 IAEDLGFIT 339 (485)
T ss_dssp EECCCSSCC
T ss_pred eccchhhcC
Confidence 999874433
|
| >d1cyga3 b.71.1.1 (A:403-491) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.04 E-value=0.13 Score=45.85 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=18.6
Q ss_pred CCcEEEEEeC----ceEEEEeCCCCC
Q psy9001 529 GDKVIIFERA----GLLFAFNFNGTQ 550 (1351)
Q Consensus 529 ~~~Vlaf~R~----~ll~v~Nf~~~~ 550 (1351)
+++|++|+|+ .+||++|.++.+
T Consensus 9 ~~DvyvyeR~fg~~~vlVAiNr~~~~ 34 (89)
T d1cyga3 9 NGDVYVYERQFGKDVVLVAVNRSSSS 34 (89)
T ss_dssp CSSEEEEEEEETTEEEEEEEECCSSC
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCC
Confidence 3569999996 799999999874
|
| >d1edta_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Streptomyces plicatus, endoglycosidase H [TaxId: 1922]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Endo-beta-N-acetylglucosaminidase species: Streptomyces plicatus, endoglycosidase H [TaxId: 1922]
Probab=90.90 E-value=0.38 Score=51.18 Aligned_cols=64 Identities=20% Similarity=0.343 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 398 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W 398 (1351)
..++...|+.||++||||||=+==+|.+.. + -+...++-|+-+++++.-+
T Consensus 64 ~~~~~~~i~~l~~~g~KvllsiGG~~~~~~--------------------------f----~~~~s~~~~~~Fa~~~~~~ 113 (265)
T d1edta_ 64 LDNAVTQIRPLQQQGIKVLLSVLGNHQGAG--------------------------F----ANFPSQQAASAFAKQLSDA 113 (265)
T ss_dssp HHTHHHHTHHHHHTTCEEEEEEEECTTSCC--------------------------T----TCCSSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCEEEEEEccCcCCCC--------------------------c----eecCCHHHHHHHHHHHHHH
Confidence 346778899999999999987633332221 0 1234677788888888899
Q ss_pred HHHcCCCccccccc
Q psy9001 399 LDEYQFDGFRFDGV 412 (1351)
Q Consensus 399 ~~e~~vDGfR~D~a 412 (1351)
+++|++||+-||--
T Consensus 114 ~~~~~~DGiDiD~E 127 (265)
T d1edta_ 114 VAKYGLDGVDFDDE 127 (265)
T ss_dssp HHHHTCCEEEEECS
T ss_pred HHhcCCCceEeccc
Confidence 99999999999853
|
| >d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.41 E-value=0.49 Score=53.35 Aligned_cols=64 Identities=23% Similarity=0.414 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 398 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W 398 (1351)
.+-|+++|+.|.++||+||||+ |.......+ ++ +.+.. . ...+.++.-++..++.++..
T Consensus 113 ~~~ld~~v~~a~~~gl~VilDl---H~~pG~~~~---~~-------~~~~~-~-------~~~~~~~~~~~~~~~~~~~i 171 (408)
T d1h4pa_ 113 ESYLDQAIGWARNNSLKVWVDL---HGAAGSQNG---FD-------NSGLR-D-------SYKFLEDSNLAVTINVLNYI 171 (408)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE---EECTTCSSC---CG-------GGSST-T-------CCCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEe---CCCCCCCcC---CC-------CCCcc-c-------ccccCCchHHHHHHHHHHHH
Confidence 4669999999999999999998 655542211 11 00100 1 11233456667778888888
Q ss_pred HHHcC
Q psy9001 399 LDEYQ 403 (1351)
Q Consensus 399 ~~e~~ 403 (1351)
+++|.
T Consensus 172 a~r~~ 176 (408)
T d1h4pa_ 172 LKKYS 176 (408)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 88764
|
| >d3bmva3 b.71.1.1 (A:407-495) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Probab=90.35 E-value=0.23 Score=44.13 Aligned_cols=74 Identities=23% Similarity=0.262 Sum_probs=43.9
Q ss_pred CCcEEEEEeC----ceEEEEeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEccCCCCccCccc
Q psy9001 529 GDKVIIFERA----GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFN 604 (1351)
Q Consensus 529 ~~~Vlaf~R~----~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~ 604 (1351)
+++|++|+|+ .+||++|.++...+. .. .-.-.+| .|.|..+|..
T Consensus 9 n~DvyvyeR~~~~~~vlVAiNr~~~~~~~-i~---------------------~l~t~LP-~G~y~d~L~g--------- 56 (89)
T d3bmva3 9 NNDVYIYERKFGNNVALVAINRNLSTSYN-IT---------------------GLYTALP-AGTYTDVLGG--------- 56 (89)
T ss_dssp CSSEEEEEEEETTEEEEEEEECCSSCCEE-EC---------------------SCBCSSC-SEEECCTTTT---------
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCcEE-ee---------------------eeeccCC-CcEEEeeecc---------
Confidence 3569999998 799999999873332 11 0002333 4889877752
Q ss_pred ccCCCCceeeeecccCCcccEEE-EEeCCcEEEEEEEC
Q psy9001 605 RLDPGTVYETYPEPWNNRRNSIK-LYLPTRTGLILTTS 641 (1351)
Q Consensus 605 ~~~~~~~~~~~~~~~~g~~~si~-l~LPpls~~vl~~~ 641 (1351)
.++... +.. -.+| ++. ++|||-++.||...
T Consensus 57 ~l~G~~-~~V---~~~G---~v~~~~L~~~~v~Vw~~~ 87 (89)
T d3bmva3 57 LLNGNS-ISV---ASDG---SVTPFTLSAGEVAVWQYV 87 (89)
T ss_dssp TTSCCC-EEE---CTTS---BBCCEEECTTCEEEEEEC
T ss_pred ccCCce-EEE---EeCC---cEeEEEECCCeEEEEEEe
Confidence 111110 111 1122 244 89999999999864
|
| >d2aama1 c.1.8.15 (A:28-312) Hypothetical protein TM1410 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: TM1410-like domain: Hypothetical protein TM1410 species: Thermotoga maritima [TaxId: 2336]
Probab=89.59 E-value=0.065 Score=58.00 Aligned_cols=84 Identities=15% Similarity=0.351 Sum_probs=57.7
Q ss_pred CCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHH
Q psy9001 1085 HPLW-DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVAN 1163 (1351)
Q Consensus 1085 ~~~w-~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~ 1163 (1351)
.+.| +..-+|+.+++.|+.|..-+.--++ .|+|||=+|.+....+.......++ .....+-+.++..+.
T Consensus 91 ~~~W~~~~~vd~~~~~w~~il~~ri~~~~~-~GfDGvflD~lD~y~~~~~~~~~~~---------~~~~~~m~~~v~~I~ 160 (285)
T d2aama1 91 DPAWPGNYFVKYWYNEWKEIVFSYLDRVID-QGFKGIYLDRIDSFEYWAQEGVISR---------RSAARKMINFVLEIA 160 (285)
T ss_dssp ETTEEEEEEECTTSHHHHHHHHHHHHHHHH-TTCSEEEEECTTHHHHHHHHTSSCH---------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCeeEecCcHHHHHHHHHHHHHHHH-cCCCeEEecccchhhhhcccCCCcc---------hhHHHHHHHHHHHHH
Confidence 4567 4557899999999999998887555 5999999999976521100000000 000122366888999
Q ss_pred HHHHhhCCCeEEEEc
Q psy9001 1164 KFLHDKYPEIITIAE 1178 (1351)
Q Consensus 1164 ~~l~~~~Pd~ilIaE 1178 (1351)
+.+|+.+|++.+|.-
T Consensus 161 ~~~r~~~P~~~ii~n 175 (285)
T d2aama1 161 EYVRERKPDMLIIPQ 175 (285)
T ss_dssp HHHHHHCTTCEEEEB
T ss_pred HHHHHhCCCCEEEEc
Confidence 999999999988875
|
| >d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Thermus aquaticus [TaxId: 271]
Probab=89.41 E-value=0.67 Score=53.57 Aligned_cols=134 Identities=19% Similarity=0.298 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCC-cCC---cccC---------CCCCCcCcccCCCCCCCCCCCccCCCCCHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNV-LDG---LNEF---------DGTQACFFHDGPRGTHPLWDSRLFNYSEIEV 387 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~-~~~---~~~f---------~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v 387 (1351)
+++++-+.|+++||++|.|+-+.=..... -|. +... .|..+.+|.. .| .+|+.+.+|...-+-
T Consensus 195 Q~~~~~~~A~~~gI~L~gDlpigv~~~saDvW~~~~lF~ld~~~~~~~~~GaPPD~fs~--~G--Q~WG~P~y~w~~l~~ 270 (500)
T d1eswa_ 195 QWGALKAEAEALGIRIIGDMPIFVAEDSAEVWAHPEWFHLDEEGRPTVVAGVPPDYFSE--TG--QRWGNPLYRWDVLER 270 (500)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESSCCSSSHHHHHCGGGBCBCTTSCBSEECEECCCSSCS--SC--EECCCCCBCHHHHHH
T ss_pred HHHHHHHHHHhcCCceeeeeeeeecCCcHHHHcCHHHhhhcccCCCccccCCCCCCCCc--cc--ccCCCCCCCHHHHHH
Confidence 47778888999999999999875332211 111 1111 2334455532 22 357766665542111
Q ss_pred --HHHHHHHHHHHHHHcCCCccccccccccccc---cCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEE
Q psy9001 388 --LRFLLSNLRWYLDEYQFDGFRFDGVTSMLYH---NHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 462 (1351)
Q Consensus 388 --~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~ 462 (1351)
-+.+++-+++=++ .+|++|+|-+.-+.+. ..+....-. |.-+....-+++. ++.+...+..+
T Consensus 271 ~gy~ww~~rl~~~~~--~~~~lRIDH~~Gf~r~W~iP~g~~~a~~-------G~~v~~p~~~l~~----~l~~~~~~~~v 337 (500)
T d1eswa_ 271 EGFSFWIRRLEKALE--LFHLVRIDHFRGFEAYWEIPASCPTAVE-------GRWVKAPGEKLFQ----KIQEVFGEVPV 337 (500)
T ss_dssp TTTHHHHHHHHHHHH--HCSEEEEETGGGGTEEEEEETTCSSSTT-------CEEEECCHHHHHH----HHHHHHSSCCE
T ss_pred hCcHHHHHHHHHHHH--hcchhhhHhHHHHHHHhhcccCCccccC-------CccccccHHHHHH----HHHHHhcCCce
Confidence 1456677777666 6899999976655321 011000000 1111222334444 34455678899
Q ss_pred EEEcCCCCC
Q psy9001 463 IAEDVSGMP 471 (1351)
Q Consensus 463 iaE~~~~~p 471 (1351)
|||+....|
T Consensus 338 iaEDLG~vp 346 (500)
T d1eswa_ 338 LAEDLGVIT 346 (500)
T ss_dssp EECCTTCCC
T ss_pred ehhhhccCC
Confidence 999875433
|
| >d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Outer surface protein, N-terminal domain domain: Outer surface protein, N-terminal domain species: Bacillus cereus [TaxId: 1396]
Probab=89.16 E-value=0.22 Score=52.25 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecc
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHS 1056 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~N 1056 (1351)
.+.|++|++.||+.||+||+||.++
T Consensus 49 ~~~~~~l~~~a~~~g~~vi~DIsp~ 73 (244)
T d1x7fa2 49 VAEFKEIINHAKDNNMEVILDVAPA 73 (244)
T ss_dssp -HHHHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCHH
Confidence 6789999999999999999999655
|
| >d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Fungus (Aspergillus aculeatus) [TaxId: 5053]
Probab=88.95 E-value=0.53 Score=51.66 Aligned_cols=112 Identities=12% Similarity=0.062 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 397 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~ 397 (1351)
..+..+++++.|+++||+|+||+.+..+-.+. ........|.+..+..-..++.++..+++..
T Consensus 58 ~~~~~~~~~~~a~~~Gm~vll~~hysd~Wadp-----------------~~q~~P~aw~~~~~~~~~~~~~~~t~~v~~~ 120 (334)
T d1foba_ 58 DLDYNLELAKRVKAAGMSLYLDLHLSDTWADP-----------------SDQTTPSGWSTTDLGTLKWQLYNYTLEVCNT 120 (334)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSSSCCBT-----------------TBCBCCTTSCSSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCEEEEEecCCCcccCC-----------------CcCCCcccccccccccHHHHHHHHHHHHHHH
Confidence 56889999999999999999999876554321 0111223466544444456777888888888
Q ss_pred HHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCch-HHHHHHHHHHHHHhhCC
Q psy9001 398 YLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD-ALIYLMVANKFLHDKYP 458 (1351)
Q Consensus 398 W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~f~~~~~~~v~~~~P 458 (1351)
.-+ +++ +.+.+..=-..+.+ +.+. .+...+.+ -..+++...++||+..|
T Consensus 121 ~k~-~~~---~~~~vqIgNE~n~g----~~w~----~g~~~~~~~~a~ll~a~~~aVr~~~~ 170 (334)
T d1foba_ 121 FAE-NDI---DIEIISIGNEIRAG----LLWP----LGETSSYSNIGALLHSGAWGVKDSNL 170 (334)
T ss_dssp HHH-TTC---CCSEEEESSSGGGC----SSBT----TTSTTCHHHHHHHHHHHHHHHHTSCC
T ss_pred HHh-cCC---CceEEEcccccCcc----ccCC----CCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 666 444 44444321000111 1000 01112222 23677777888888764
|
| >d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase homologue TM1752 species: Thermotoga maritima [TaxId: 2336]
Probab=88.90 E-value=1.9 Score=45.59 Aligned_cols=110 Identities=10% Similarity=0.119 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 397 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~ 397 (1351)
..+-++++|++|.++||+||||+ |....... ... +......+.+...++..+...+.
T Consensus 59 ~l~~ld~~v~~~~~~gi~vildl---H~~pg~~~---~~~-----------------~~~~~~~~~~~~~~~~~~~~w~~ 115 (325)
T d1vjza_ 59 FFEKIDRVIFWGEKYGIHICISL---HRAPGYSV---NKE-----------------VEEKTNLWKDETAQEAFIHHWSF 115 (325)
T ss_dssp GHHHHHHHHHHHHHHTCEEEEEE---EEETTEES---CTT-----------------SCCSSCTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEee---cccccccc---Ccc-----------------cccccccccchhhHHHHHHHHHH
Confidence 36789999999999999999998 43222100 000 00011223345556666666666
Q ss_pred HHHHcC-CCc--cccccccccccccCCCCCCCCCCccccCCCccCc-hHHHHHHHHHHHHHhhCCCeEEEEE
Q psy9001 398 YLDEYQ-FDG--FRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT-DALIYLMVANKFLHDKYPEIITIAE 465 (1351)
Q Consensus 398 W~~e~~-vDG--fR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~f~~~~~~~v~~~~P~~~~iaE 465 (1351)
.+++|. ... .=+|+..+- ... ....... +...+.+.+.++|++..|+.+++-+
T Consensus 116 ~a~~~~~~~~~i~~~el~NEP---------~~~------~~~~~~~~~~~~~~~~~~~~ir~~~p~~~v~v~ 172 (325)
T d1vjza_ 116 IARRYKGISSTHLSFNLINEP---------PFP------DPQIMSVEDHNSLIKRTITEIRKIDPERLIIID 172 (325)
T ss_dssp HHHHHTTSCTTTEEEECSSCC---------CCC------BTTTBCHHHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHhcccceeEEeeeccccC---------CCC------ccccchhhhhhhHHHHHHHHHhccCCCcEEEec
Confidence 666542 111 123332221 000 0001111 2335778888899999999877655
|
| >d2ebna_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Endo-beta-N-acetylglucosaminidase species: Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]
Probab=88.59 E-value=1.3 Score=47.04 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 1111 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yW 1111 (1351)
.+++..+|+.||++||||+|=|==+|.+.. +.--+++-|+.+.+++.-.
T Consensus 66 ~~~~~~~i~~~q~~g~KvllsigG~~~~~~-------------------------------~~~~~~~~~~~F~~~~~~~ 114 (285)
T d2ebna_ 66 LTNRAKYLKPLQDKGIKVILSILGNHDRSG-------------------------------IANLSTARAKAFAQELKNT 114 (285)
T ss_dssp HHTHHHHTHHHHHTTCEEEEEEECCSSSCC-------------------------------TTCBCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCEEEEEeccCCCCcc-------------------------------cccCCHHHHHHHHHHHHHH
Confidence 566889999999999999998732221110 1111567788888888888
Q ss_pred HHHhCCCeEEEcCc
Q psy9001 1112 LEEYQFDGFRFDGV 1125 (1351)
Q Consensus 1112 l~eygVDGFRfD~a 1125 (1351)
+++|++||+-+|-=
T Consensus 115 ~~~y~lDGiDiD~E 128 (285)
T d2ebna_ 115 CDLYNLDGVFFDDE 128 (285)
T ss_dssp HHHHTCCEEEEECC
T ss_pred HHHcCCcEEecccc
Confidence 99999999999954
|
| >d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase CelC species: Clostridium thermocellum [TaxId: 1515]
Probab=87.84 E-value=1.4 Score=47.64 Aligned_cols=103 Identities=13% Similarity=0.136 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 1111 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yW 1111 (1351)
.+.|+++|+.|.++||+||||+ |...... .. .. ....-++++..++..++..+..
T Consensus 68 ~~~ld~~v~~a~~~gi~vild~---H~~p~~~-----~~-----~~------------~~~~~~~~~~~~~~~~~~~~~l 122 (340)
T d1ceoa_ 68 LSYIDRCLEWCKKYNLGLVLDM---HHAPGYR-----FQ-----DF------------KTSTLFEDPNQQKRFVDIWRFL 122 (340)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE---EECCC------------------------------CCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEEe---cCCCccc-----cc-----cc------------ccccccccHHHHHHHHHHHHHH
Confidence 6779999999999999999998 4333210 00 00 0012345678888888888888
Q ss_pred HHHhCCC-e-EEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEc
Q psy9001 1112 LEEYQFD-G-FRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 1178 (1351)
Q Consensus 1112 l~eygVD-G-FRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE 1178 (1351)
+++|+=. . +=++.+... .......-..+.+++.++||+..|+.+++-+
T Consensus 123 a~ry~~~p~v~~~el~NEP-------------------~~~~~~~~~~~~~~~~~aIR~~dp~~~I~v~ 172 (340)
T d1ceoa_ 123 AKRYINEREHIAFELLNQV-------------------VEPDSTRWNKLMLECIKAIREIDSTMWLYIG 172 (340)
T ss_dssp HHHTTTCCSSEEEECCSCC-------------------CCSSSHHHHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred HHhcCCCCcEEEEeeeeec-------------------CCCCHHHHHHHHHHHHHHHHhcCCCcEEEeC
Confidence 8876411 0 112222211 1111233455788899999999999766554
|
| >d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: AMPK-beta glycogen binding domain-like domain: 5'-AMP-activated protein kinase subunit beta-1 species: Rattus norvegicus [TaxId: 10116]
Probab=87.61 E-value=0.31 Score=43.03 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=15.3
Q ss_pred EEEEeecCCccEEEEEec-chh
Q psy9001 707 VRCFEWAPSAQQLYLTGY-NAV 727 (1351)
Q Consensus 707 ~~~~~WaP~A~~v~l~~~-~~~ 727 (1351)
|+| .|.+.|++|+|.|. |+|
T Consensus 4 ~~f-~w~~~a~~V~v~Gsfn~W 24 (87)
T d1z0na1 4 TVF-RWTGGGKEVYLSGSFNNW 24 (87)
T ss_dssp EEE-EECSCCSCEEEEEGGGTT
T ss_pred EEE-EEcCCCEEEEEEEEeCCC
Confidence 444 59999999999993 553
|
| >d1cxla3 b.71.1.1 (A:407-496) Cyclodextrin glycosyltransferase {Bacillus circulans, different strains [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Cyclodextrin glycosyltransferase species: Bacillus circulans, different strains [TaxId: 1397]
Probab=87.53 E-value=0.34 Score=43.11 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=44.2
Q ss_pred CCcEEEEEeC----ceEEEEeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEccCCCCccCccc
Q psy9001 529 GDKVIIFERA----GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFN 604 (1351)
Q Consensus 529 ~~~Vlaf~R~----~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~ 604 (1351)
+++|++|+|+ .+||++|.++.+.+. .. .-...+| .|+|..+|. |.
T Consensus 9 ~~DvyvyeR~~g~~~vlVAiNr~~~~~~~-i~---------------------~l~t~LP-~Gty~d~L~-------g~- 57 (90)
T d1cxla3 9 NNDVLIYERKFGSNVAVVAVNRNLNAPAS-IS---------------------GLVTSLP-QGSYNDVLG-------GL- 57 (90)
T ss_dssp CSSEEEEEEEETTEEEEEEEECCSSCCEE-EC---------------------SCBCSCC-SEEECCTTT-------TT-
T ss_pred CCCEEEEEEEcCCCEEEEEEECCCCCCEE-ec---------------------ceeccCC-CcEEEeeec-------cc-
Confidence 3569999996 799999998773331 11 0012333 488877764 21
Q ss_pred ccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEECC
Q psy9001 605 RLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTTSP 642 (1351)
Q Consensus 605 ~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~~~ 642 (1351)
++.. .+... .+|. ...++|||-++.|+....
T Consensus 58 -l~G~-~itV~---~~g~--~~~~~L~~~~v~Vw~~~~ 88 (90)
T d1cxla3 58 -LNGN-TLSVG---SGGA--ASNFTLAAGGTAVWQYTA 88 (90)
T ss_dssp -TSCC-CEEEC---GGGB--BCCEEECTTCEEEEEEEC
T ss_pred -cCCc-eEEEE---eCCc--EEEEEECCCcEEEEEEec
Confidence 1111 11111 1121 234899999999998754
|
| >d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: AMPK-beta glycogen binding domain-like domain: SIP2 species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=87.02 E-value=0.45 Score=41.77 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=16.5
Q ss_pred EEEEeecCCccEEEEEec-chh
Q psy9001 707 VRCFEWAPSAQQLYLTGY-NAV 727 (1351)
Q Consensus 707 ~~~~~WaP~A~~v~l~~~-~~~ 727 (1351)
++|+ |.+.|++|+|.|. |+|
T Consensus 6 v~f~-w~~~g~~V~v~GsFn~W 26 (87)
T d2qlvb1 6 VEIR-WQQGGSKVYVTGSFTKW 26 (87)
T ss_dssp EEEE-ECSCCSCEEEEEGGGTT
T ss_pred EEEE-ECCCCeEEEEEEEecCc
Confidence 6676 9999999999994 664
|
| >d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Outer surface protein, N-terminal domain domain: Outer surface protein, N-terminal domain species: Bacillus cereus [TaxId: 1396]
Probab=87.01 E-value=0.17 Score=53.16 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccc
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHAS 346 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~ 346 (1351)
.+.|++|++.||+.||+||+||.++-..
T Consensus 49 ~~~~~~l~~~a~~~g~~vi~DIsp~~l~ 76 (244)
T d1x7fa2 49 VAEFKEIINHAKDNNMEVILDVAPAVFD 76 (244)
T ss_dssp -HHHHHHHHHHHHTTCEEEEEECTTCC-
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCHHHHH
Confidence 5789999999999999999999887443
|
| >d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=86.60 E-value=0.7 Score=53.71 Aligned_cols=133 Identities=19% Similarity=0.258 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeec--ccccCCc---cccCc--------CCCCCCCccccCCCCCCCCCCCCCCCCCCCH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVH--SHASKNV---LDGLN--------EFDGTQACFFHDGPRGTHPLWDSRLFNYSEI 1098 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~--NHts~~~---~~~l~--------~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np 1098 (1351)
-++++++-+.|+++||+++.|+-+ +|-|.+. .+-+. ..-|.++++|... | .+|+...+|.
T Consensus 220 ~~Q~~~~~~~A~~~Gi~L~gDlpi~V~~dsaDvW~~~~lF~l~~~~~~~~~~GaPPD~Fs~~--G--Q~WG~P~y~w--- 292 (523)
T d1x1na1 220 QRQWKKVRDYARSKGISIMGDMPIYVGYHSADVWANKKQFLLNRKGFPLIVSGVPPDAFSET--G--QLWGSPLYDW--- 292 (523)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESSCCSSSHHHHTCGGGBCBCTTSCBSEEEEBCCSSSSSC--C--BCCCCBCBCH---
T ss_pred HHHHHHHHHHHHhhCCceEEeeeeeecCCchhhhcCchhhhccccCCCccccCCCCCCCCcc--c--cccCCCCCCH---
Confidence 478999999999999999999987 5544432 11011 0134556666432 2 4676655554
Q ss_pred HHHH-----HHHHHHHHHHHHhCCCeEEEcCccccccc---CCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhC
Q psy9001 1099 EVLR-----FLLSNLRWYLEEYQFDGFRFDGVTSMLYH---NHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY 1170 (1351)
Q Consensus 1099 ~Vr~-----~lid~l~yWl~eygVDGFRfD~a~~m~~~---~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~ 1170 (1351)
+..+ ..++-++.=++ .+|++|+|-+.-+.+. ..+...+..|.+..+. ...++. .|.+..
T Consensus 293 ~~l~~~gy~ww~~rlr~~~~--~~d~lRIDH~~Gf~r~W~iP~~~~~a~~G~~~~~p-------~~~l~~----~l~~~~ 359 (523)
T d1x1na1 293 KAMEKDGFSWWVRRIQRATD--LFDEFRIDHFRGFAGFWAVPSEEKIAILGRWKVGP-------GKPLFD----AILQAV 359 (523)
T ss_dssp HHHHHTTSHHHHHHHHHHHH--HCSEEEEETGGGGTEEEEEETTCSSSSSCEEEECC-------CHHHHH----HHHHHH
T ss_pred HHHhccchHHHHHHHHHHHH--hCCeeeehhHHHHHHHhccccCCCccccCcccccc-------HHHHHH----HHHHHc
Confidence 3322 23344444444 6899999988655432 0111112222222221 222333 344445
Q ss_pred CCeEEEEccCCCCC
Q psy9001 1171 PEIITIAEDVSGMP 1184 (1351)
Q Consensus 1171 Pd~ilIaE~~~~~p 1184 (1351)
.+..+|||+....|
T Consensus 360 ~~~~vigEDLG~vp 373 (523)
T d1x1na1 360 GKINIIAEDLGVIT 373 (523)
T ss_dssp CCCEEEECCCSSCC
T ss_pred CCCceEehhhccCC
Confidence 67899999864333
|
| >d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exomannosidase species: Cellvibrio mixtus [TaxId: 39650]
Probab=86.46 E-value=0.67 Score=50.16 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeec
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVH 342 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~ 342 (1351)
.+.+.++|++|+++||+||+|+..
T Consensus 89 l~~~d~~l~~a~~~Gi~vi~~l~~ 112 (410)
T d1uuqa_ 89 LQGLDYLLVELAKRDMTVVLYFNN 112 (410)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCB
T ss_pred HHHHHHHHHHHHHcCCeeEEeccc
Confidence 567899999999999999999863
|
| >d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]
Probab=86.36 E-value=0.49 Score=50.76 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeec
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVVH 342 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV~ 342 (1351)
..+.++++|+.|+++||+||||+.+
T Consensus 58 ~~~~~~~~v~~a~~~gl~vil~~h~ 82 (332)
T d1hjsa_ 58 NLDYNIAIAKRAKAAGLGVYIDFHY 82 (332)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecC
Confidence 4688999999999999999999843
|
| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Bacillus licheniformis [TaxId: 1402]
Probab=85.07 E-value=1.4 Score=48.87 Aligned_cols=114 Identities=14% Similarity=0.134 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1110 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~y 1110 (1351)
..+.++++++.||++||+||||+ |-++. |...+.......|.. ....+..+.+.+-.+.
T Consensus 77 ~l~~~~~~~~~a~~~Gl~v~ldl---H~sd~--------------wadp~~q~~p~~w~~----~~~~~~~~~~~~~~~~ 135 (387)
T d1ur4a_ 77 DLEKAIQIGKRATANGMKLLADF---HYSDF--------------WADPAKQKAPKAWAN----LNFEDKKTALYQYTKQ 135 (387)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEE---CSSSS--------------CCSSSCCCCCGGGTT----CCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCEEEEEe---CCCCC--------------CcCCCCCCCchhhhc----cchhHHHHHHHHHHHH
Confidence 48999999999999999999998 33321 111111111222322 2334455555555555
Q ss_pred HHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChh-HHHHHHHHHHHHHhhCCCeEEEE
Q psy9001 1111 YLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD-ALIYLMVANKFLHDKYPEIITIA 1177 (1351)
Q Consensus 1111 Wl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~-~~~fl~~~~~~l~~~~Pd~ilIa 1177 (1351)
.+.++.-.|...+++...=.-.. ++ ++ ..+.+ -..+++.+.+.|++..|++.++-
T Consensus 136 ~~~~~~~~~~~~~~~eigNE~~~----~~-------~~-~~~~~~~~~ll~~~~~avr~~dp~~~vi~ 191 (387)
T d1ur4a_ 136 SLKAMKAAGIDIGMVQVGNETNG----GL-------AG-ETDWAKMSQLFNAGSQAVRETDSNILVAL 191 (387)
T ss_dssp HHHHHHHTTCCEEEEEESSSCSS----CB-------TT-BCCHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHhhcCCCccEEEEecCCCc----Cc-------cC-cCCHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 55555444555554432200000 00 11 12333 34577888999999999865553
|
| >d1ua7a1 b.71.1.1 (A:348-425) Bacterial alpha-Amylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Bacterial alpha-Amylase species: Bacillus subtilis [TaxId: 1423]
Probab=83.92 E-value=1 Score=38.88 Aligned_cols=69 Identities=10% Similarity=0.174 Sum_probs=44.3
Q ss_pred ecCCCcEEEEEeC-ceEEEEeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEccCCCCccCccc
Q psy9001 526 KHEGDKVIIFERA-GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFN 604 (1351)
Q Consensus 526 ~~~~~~Vlaf~R~-~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~ 604 (1351)
...+++++.|.|. +-+||+|......-..+. .++| +|+|..|+.. +.
T Consensus 8 ~~g~nqi~~~~RG~kGfvaiN~~~~~~~~~~~------------------------T~Lp-~GtYcDvisg------~~- 55 (78)
T d1ua7a1 8 PQGNNQIFMNQRGSHGVVLANAGSSSVSINTA------------------------TKLP-DGRYDNKAGA------GS- 55 (78)
T ss_dssp GGGCTTEEEEEETTTEEEEEECSSSCEEEEEE------------------------CCSC-SEEEECTTSS------CE-
T ss_pred CCCCeEEEEEecCCcEEEEEeCCCCcEEeeEE------------------------ccCC-CcceeEEecC------CE-
Confidence 3446778888998 677778887652222222 5664 6999888752 21
Q ss_pred ccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEE
Q psy9001 605 RLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTT 640 (1351)
Q Consensus 605 ~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~ 640 (1351)
+.. .+ ..++.+||+.++++|-.
T Consensus 56 -------~tV----s~---G~~t~tVp~~s~~vl~~ 77 (78)
T d1ua7a1 56 -------FQV----ND---GKLTGTINARSVAVLYP 77 (78)
T ss_dssp -------EEE----ET---TEEEEEECTTEEEEECC
T ss_pred -------EEE----eC---CEEEEEECCCcEEEEec
Confidence 111 12 35889999999999853
|
| >d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Yeast (Candida albicans) [TaxId: 5476]
Probab=83.81 E-value=1.7 Score=48.22 Aligned_cols=112 Identities=14% Similarity=0.212 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy9001 1030 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 1109 (1351)
Q Consensus 1030 Gt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~ 1109 (1351)
+..+-|+++|+.|.++||+||||+ |.......+. -+.+..+ ...+.++.-++..++.++
T Consensus 105 ~~~~~ld~~i~~a~~~gl~VilDl---H~~pg~~~~~----------~~~g~~~--------~~~~~~~~~~~~~~~~~~ 163 (394)
T d2pb1a1 105 GQVQYLEKALGWARKNNIRVWIDL---HGAPGSQNGF----------DNSGLRD--------SYNFQNGDNTQVTLNVLN 163 (394)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEE---EECTTCSSCC----------GGGSSTT--------CCCTTSTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCcEEEEEe---eccCCcccCc----------CCcCccC--------ccccccHHHHHHHHHHHH
Confidence 457889999999999999999998 5544331111 0111111 122344556677777888
Q ss_pred HHHHHhCCCe-----EEEcCcccccccCCCCCCCCCCCcccccCCcCCh-hHHHHHHHHHHHHHhhCCCeEE-EEccC
Q psy9001 1110 WYLEEYQFDG-----FRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT-DALIYLMVANKFLHDKYPEIIT-IAEDV 1180 (1351)
Q Consensus 1110 yWl~eygVDG-----FRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~-~~~~fl~~~~~~l~~~~Pd~il-IaE~~ 1180 (1351)
..+++|.-.. .=+|++..- .+...+. .-..+.+.+.++||+..|+..+ |+..+
T Consensus 164 ~ia~~~~~~~~~~~v~g~el~NEP------------------~~~~~~~~~~~~~~~~~~~~IR~~~~~~~I~i~~~~ 223 (394)
T d2pb1a1 164 TIFKKYGGNEYSDVVIGIELLNEP------------------LGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAF 223 (394)
T ss_dssp HHHHHHSSGGGTTTEEEEESCSCC------------------CGGGSCHHHHHHHHHHHHHHHHHTTCCCCEEEECTT
T ss_pred HHHHHHccCCCCCceEEEeecccC------------------CcccccHHHHHHHHHHHHHHHHHhCCCCeEEEcCCC
Confidence 8888775221 112333211 1111122 2456778899999999998755 55444
|
| >d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Trichoderma reesei [TaxId: 51453]
Probab=83.80 E-value=3 Score=44.13 Aligned_cols=112 Identities=8% Similarity=0.098 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 398 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W 398 (1351)
.+.+..++++|+++||+||+|+.-. .+.. .+. ..|... . +.....-+.++++++...+.++..
T Consensus 89 ~~~ld~~~~~a~~~Gi~vi~~l~~~-~~~~--~~~-------~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~ 151 (344)
T d1qnra_ 89 LQTLDYVVQSAEQHNLKLIIPFVNN-WSDY--GGI-------NAYVNA-F------GGNATTWYTNTAAQTQYRKYVQAV 151 (344)
T ss_dssp THHHHHHHHHHHHHTCEEEEESCBS-SSTT--SHH-------HHHHHH-H------CSCTTGGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeeEeeccCC-cccc--ccc-------cccccc-c------ccccccccCCHHHHHHHHHHHHHH
Confidence 5789999999999999999998632 1111 000 000000 0 000122356789999988988888
Q ss_pred HHHcCCCc-c-ccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEE
Q psy9001 399 LDEYQFDG-F-RFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 464 (1351)
Q Consensus 399 ~~e~~vDG-f-R~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~ia 464 (1351)
++.|.=.- . =+|+..+. .. ..........+++.+.+.+|+..|+..++.
T Consensus 152 ~~r~~~~p~v~~~~l~NEp---------~~--------~~~~~~~~~~~~~~~~~~ir~~d~~~~v~~ 202 (344)
T d1qnra_ 152 VSRYANSTAIFAWELGNEP---------RC--------NGCSTDVIVQWATSVSQYVKSLDSNHLVTL 202 (344)
T ss_dssp HHHHTTCTTEEEEESCBSC---------CC--------TTCCTHHHHHHHHHHHHHHHHHCSSSEEEC
T ss_pred HHHhCCCCceeeeccCCcc---------CC--------CCCchhhhhHHHHHHHHHHHhhCCCCEEEE
Confidence 88642111 0 01111111 00 111122345678888999999999876544
|
| >d2ebna_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Endo-beta-N-acetylglucosaminidase species: Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]
Probab=83.24 E-value=3.8 Score=43.29 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 398 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W 398 (1351)
.+++..+|+.||++||||+|=+==+|.+.. +. .+ +++-|+.+++++.-.
T Consensus 66 ~~~~~~~i~~~q~~g~KvllsigG~~~~~~--------------------------~~--~~---~~~~~~~F~~~~~~~ 114 (285)
T d2ebna_ 66 LTNRAKYLKPLQDKGIKVILSILGNHDRSG--------------------------IA--NL---STARAKAFAQELKNT 114 (285)
T ss_dssp HHTHHHHTHHHHHTTCEEEEEEECCSSSCC--------------------------TT--CB---CHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCEEEEEeccCCCCcc--------------------------cc--cC---CHHHHHHHHHHHHHH
Confidence 456788899999999999987643332111 10 11 567788888888888
Q ss_pred HHHcCCCcccccc
Q psy9001 399 LDEYQFDGFRFDG 411 (1351)
Q Consensus 399 ~~e~~vDGfR~D~ 411 (1351)
+++|+.||+-+|-
T Consensus 115 ~~~y~lDGiDiD~ 127 (285)
T d2ebna_ 115 CDLYNLDGVFFDD 127 (285)
T ss_dssp HHHHTCCEEEEEC
T ss_pred HHHcCCcEEeccc
Confidence 9999999998884
|
| >d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=82.83 E-value=2.2 Score=45.43 Aligned_cols=128 Identities=10% Similarity=0.050 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccCC-ccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKN-VLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 1109 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV~NHts~~-~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~ 1109 (1351)
..+.|+++|+.|.++||+||+|+.. +.... .... ...|...... ........+.+|.+++.+++.++
T Consensus 80 ~l~~ld~~l~~a~~~Gi~vi~~l~~-~~~~~~~~~~-------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 147 (370)
T d1rh9a1 80 MFQGLDFVISEAKKYGIHLIMSLVN-NWDAFGGKKQ-------YVEWAVQRGQ----KLTSDDDFFTNPMVKGFYKNNVK 147 (370)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCB-SSSSSSBHHH-------HHHHHHHTTC----CCCCGGGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEeccc-ccccccCCcc-------cccccccCCC----cCCccccccCCHHHHHHHHHHHH
Confidence 3789999999999999999999842 22111 1000 0011111100 11123456788999999999999
Q ss_pred HHHHHhCCC-eEEEcCcccccccCCCCCCCCCCCccccc-CCc-CChhHHHHHHHHHHHHHhhCCCeEEEEcc
Q psy9001 1110 WYLEEYQFD-GFRFDGVTSMLYHNHGCGEGFSGHYDEYF-GLN-VDTDALIYLMVANKFLHDKYPEIITIAED 1179 (1351)
Q Consensus 1110 yWl~eygVD-GFRfD~a~~m~~~~~g~~~~~~~~~~~~~-g~~-~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~ 1179 (1351)
..++++.-- +-++-.-..++-... .++.. +.. ....-..+++.+.+.+++..|+.+++.+.
T Consensus 148 ~~v~r~~~~~~~~~~~~~~v~~~~l---------~NEp~~~~~~~~~~~~~~~~~~~~~ir~~dp~~~v~~~~ 211 (370)
T d1rh9a1 148 VVLTRVNTITKVAYKDDPTILSWEL---------INEPRCPSDLSGKTFQNWVLEMAGYLKSIDSNHLLEIGL 211 (370)
T ss_dssp HHHHCBCTTTCSBGGGCTTEEEEES---------CBSCCCTTCTTSHHHHHHHHHHHHHHHHHCCSSEEECCC
T ss_pred HHHHhhhhhhHhhhcCCceeeeecc---------ccccccCCccchHHHHHHHHHHHHHHHhhCCCCeEEEec
Confidence 988753110 000000000100000 01110 011 12233467788888999999998887654
|
| >d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: endo-1,4-beta-mannosidase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=82.61 E-value=1 Score=47.43 Aligned_cols=24 Identities=0% Similarity=0.256 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeec
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVH 342 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~ 342 (1351)
.+.++++|+.|.++||.||+|+..
T Consensus 87 ~~~~d~~~~~a~~~gi~vi~d~~~ 110 (350)
T d2c0ha1 87 ISDMRAYLHAAQRHNILIFFTLWN 110 (350)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred hHHHHHHHHHHHHCCCEEEEEecc
Confidence 688999999999999999999843
|
| >d2aama1 c.1.8.15 (A:28-312) Hypothetical protein TM1410 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: TM1410-like domain: Hypothetical protein TM1410 species: Thermotoga maritima [TaxId: 2336]
Probab=82.27 E-value=0.34 Score=52.11 Aligned_cols=85 Identities=16% Similarity=0.359 Sum_probs=58.1
Q ss_pred CCCCCC-CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHH
Q psy9001 371 THPLWD-SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVA 449 (1351)
Q Consensus 371 ~~~~w~-~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~ 449 (1351)
..+.|. ..-+|+.+|+.|++|..-+.--++ .|+||+=+|.+....+.......++. ....+-+.|+..+
T Consensus 90 ~~~~W~~~~~vd~~~~~w~~il~~ri~~~~~-~GfDGvflD~lD~y~~~~~~~~~~~~---------~~~~~m~~~v~~I 159 (285)
T d2aama1 90 EDPAWPGNYFVKYWYNEWKEIVFSYLDRVID-QGFKGIYLDRIDSFEYWAQEGVISRR---------SAARKMINFVLEI 159 (285)
T ss_dssp EETTEEEEEEECTTSHHHHHHHHHHHHHHHH-TTCSEEEEECTTHHHHHHHHTSSCHH---------HHHHHHHHHHHHH
T ss_pred CCCCCCCCeeEecCcHHHHHHHHHHHHHHHH-cCCCeEEecccchhhhhcccCCCcch---------hHHHHHHHHHHHH
Confidence 356774 457899999999999998887555 89999999987764211000000000 0011225688889
Q ss_pred HHHHHhhCCCeEEEEE
Q psy9001 450 NKFLHDKYPEIITIAE 465 (1351)
Q Consensus 450 ~~~v~~~~P~~~~iaE 465 (1351)
.+.+|+.+|+..+|.-
T Consensus 160 ~~~~r~~~P~~~ii~n 175 (285)
T d2aama1 160 AEYVRERKPDMLIIPQ 175 (285)
T ss_dssp HHHHHHHCTTCEEEEB
T ss_pred HHHHHHhCCCCEEEEc
Confidence 9999999999999875
|
| >d1eoka_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Endo-beta-N-acetylglucosaminidase species: Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]
Probab=81.50 E-value=0.8 Score=48.15 Aligned_cols=70 Identities=13% Similarity=0.138 Sum_probs=49.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy9001 1027 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLS 1106 (1351)
Q Consensus 1027 p~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid 1106 (1351)
..+-+.++|+.-|++||++|++|||-+==.+... .+.. -......+++..
T Consensus 53 ~~~~~~~~~~~~i~~~q~~g~kVllSiGG~~~~~---------------~~~~---------------~~~~~~~~~~~~ 102 (282)
T d1eoka_ 53 GSFKSYKDLDTQIRSLQSRGIKVLQNIDDDVSWQ---------------SSKP---------------GGFASAAAYGDA 102 (282)
T ss_dssp TTCSSHHHHHHHHHHHHTTTCEEEEEEECCGGGG---------------SSSG---------------GGSSSHHHHHHH
T ss_pred ecccchhHHHHHHHHHhhcCceEEEEEecCCCCC---------------ccCC---------------ccHHHHHHHHHH
Confidence 3456789999999999999999999862111000 0000 001146778888
Q ss_pred HHHHHHHHhCCCeEEEcCcc
Q psy9001 1107 NLRWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1107 ~l~yWl~eygVDGFRfD~a~ 1126 (1351)
++.-.+++|++|||=||.=.
T Consensus 103 ~~~~~i~~yglDGiDiD~E~ 122 (282)
T d1eoka_ 103 IKSIVIDKWKLDGISLDIEH 122 (282)
T ss_dssp HHHHHTTTTCCCEEEEECCC
T ss_pred HHHHHHHHhCCCceeecccC
Confidence 88888999999999999754
|
| >d1wzla1 b.1.18.2 (A:1-120) Maltogenic amylase, N-terminal domain N {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Maltogenic amylase, N-terminal domain N species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=81.32 E-value=1.2 Score=41.50 Aligned_cols=78 Identities=10% Similarity=0.053 Sum_probs=47.4
Q ss_pred cCCCCCcccccccccccc-CceeEEE-----EEEEEEE-eecCCCC---ccccceeec----CCCeEEEEcCCCCCCCcc
Q psy9001 49 AGLFGTPEQLKYLVDECH-KAGLLCF-----MHVVCAA-GDFNNWN---REEFAYKKL----DFGKWELVLPPNPDGSCK 114 (1351)
Q Consensus 49 ~~~f~~~~~l~~l~~~~~-~~gv~F~-----A~~V~Lv-GDFN~Wd---~~~~~M~k~----~~GvW~~~ip~~~~G~~~ 114 (1351)
+.+||.|++ .|...... +--++++ +++|.|+ ||=-.|+ ....+|++. ....|++.|+.....
T Consensus 4 ~Ai~H~p~s-~y~y~~~~~~l~IRLRT~k~dv~~V~l~~gDpy~~~~~~~~~~~M~k~~s~~~fDywe~~i~~~~~r--- 79 (120)
T d1wzla1 4 EAIFHEAKG-SYAYPISETQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKR--- 79 (120)
T ss_dssp GGCBCCSST-TTEEEEETTEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSC---
T ss_pred heEEEcCCc-cceEecCCCEEEEEEEeccCCccEEEEEEcCCccCCCCCEEEEEEEEeccCCCeeEEEEEEECCCCe---
Confidence 345666633 45433222 2245555 7788886 7633343 244689873 257999999754332
Q ss_pred cCcccEEEEEEEecCCceee
Q psy9001 115 LTHLSQVKLVVRNQHGHLLD 134 (1351)
Q Consensus 115 ~~~g~~Y~y~i~~~~g~~~~ 134 (1351)
..|.|+|.+.+|+..+
T Consensus 80 ----~~Y~F~l~~~~g~~~~ 95 (120)
T d1wzla1 80 ----VKYVFLLTGPQGEAVY 95 (120)
T ss_dssp ----EEEEEEEECTTSCEEE
T ss_pred ----EEEEEEEEcCCccEEE
Confidence 5899999987777553
|
| >d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Aquifex aeolicus [TaxId: 63363]
Probab=80.58 E-value=1 Score=51.83 Aligned_cols=136 Identities=21% Similarity=0.273 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCcccc----CcCCC---------CCCCccccCCCCCCCCCCCCCCCCCCCH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG----LNEFD---------GTQACFFHDGPRGTHPLWDSRLFNYSEI 1098 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~----l~~~d---------g~~~~yf~~~~~g~~~~w~~~dlN~~np 1098 (1351)
-++++++-+.|+++||++|.|+-+-=......-| +-..+ |.++++|... | .+|+..-+|...-
T Consensus 186 ~~Q~~~~~~~a~~~gI~L~gDLpigv~~dsaDvW~~~~lF~l~~~~~~~~~~GaPPD~Fs~~--G--Q~WG~P~y~w~~l 261 (485)
T d1tz7a1 186 FKQWEKLRRYARERGISIVGDLPMYPSYSSADVWTNPELFKLDGDLKPLFVAGVPPDFFSKT--G--QLWGNPVYNWEEH 261 (485)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSCCSSSHHHHHCGGGBCBCTTSCBSEEEEECCCSSSSS--C--EEEEEECBCHHHH
T ss_pred HHHHHHHHHHHHhcCCeeeeeccccCCCChhhhhcCHHHhhcCCccCcceeecCCCCCCCcc--c--ccCCCCCcCHHHH
Confidence 4678999999999999999999875322211111 11111 4555666422 2 3455444443211
Q ss_pred HHH--HHHHHHHHHHHHHhCCCeEEEcCcccccccC---CCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCe
Q psy9001 1099 EVL--RFLLSNLRWYLEEYQFDGFRFDGVTSMLYHN---HGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEI 1173 (1351)
Q Consensus 1099 ~Vr--~~lid~l~yWl~eygVDGFRfD~a~~m~~~~---~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ 1173 (1351)
+-. +..++-++.=++ .+|++|+|-+.-+.+.= .|...+..|.+. ..+...++. .|.+..++.
T Consensus 262 ~~~gy~ww~~rl~~~~~--~~d~lRIDH~~Gf~r~W~iP~g~~~a~~G~~v-------~~p~~~l~~----~l~~~~~~~ 328 (485)
T d1tz7a1 262 EKEGFRWWIRRVLHNLK--LFDFLRLDHFRGFEAYWEVPYGEETAVNGRWV-------KAPGKTLFK----KLLSYFPKN 328 (485)
T ss_dssp HHTTTHHHHHHHHHHHT--TCSEEEETTGGGGTEEEEEETTCSSSTTCEEE-------ECCHHHHHH----HHHHHSTTC
T ss_pred hhcCcHHHHHHHHHHHH--hcchHHHHHHHHHHHhhcccCCCCCccccccc-------ccCHHHHHH----HHHHHcCCC
Confidence 111 124444444333 78999999886553320 111111112122 222333433 455667888
Q ss_pred EEEEccCCCCC
Q psy9001 1174 ITIAEDVSGMP 1184 (1351)
Q Consensus 1174 ilIaE~~~~~p 1184 (1351)
.+|||+....|
T Consensus 329 ~iigEDLG~vp 339 (485)
T d1tz7a1 329 PFIAEDLGFIT 339 (485)
T ss_dssp CEEECCCSSCC
T ss_pred ceeccchhhcC
Confidence 99999874443
|
| >d1wzaa1 b.71.1.1 (A:437-515) Bacterial alpha-Amylase {Halothermothrix orenii [TaxId: 31909]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Bacterial alpha-Amylase species: Halothermothrix orenii [TaxId: 31909]
Probab=80.44 E-value=5.3 Score=32.07 Aligned_cols=69 Identities=20% Similarity=0.365 Sum_probs=46.8
Q ss_pred cCCCcEEEEEeC----ceEEEEeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEccCCCCccCc
Q psy9001 527 HEGDKVIIFERA----GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGG 602 (1351)
Q Consensus 527 ~~~~~Vlaf~R~----~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vlnsD~~~ygG 602 (1351)
+.+-.|++|.|- .|.|-.|+-..+ .+ |.| ..|.|..++||-+.+.
T Consensus 7 ngglnvvafrryndkrdlyvyhnlvnrp----vk------------------------ikv-asgnwtllfnsgdkei-- 55 (79)
T d1wzaa1 7 NGGLNVVAFRRYNDKRDLYVYHNLVNRP----VK------------------------IKV-ASGNWTLLFNSGDKEI-- 55 (79)
T ss_dssp CCCTTEEEEEEECSSCEEEEEEECSSSC----EE------------------------EEE-ESSCEEEEEESSSSCC--
T ss_pred cCCeeEEEEEeecCcccEEEEehhcCCc----EE------------------------EEE-ecCcEEEEEccCCcee--
Confidence 345569999995 788888986541 12 666 4699999999732211
Q ss_pred ccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEEC
Q psy9001 603 FNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTTS 641 (1351)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~~ 641 (1351)
.+.+- .+.+.-+||+.+++||.++
T Consensus 56 ------------tpved---nnklmytipayttivleke 79 (79)
T d1wzaa1 56 ------------TPVED---NNKLMYTIPAYTTIVLEKE 79 (79)
T ss_dssp ------------CCEEC---SSEEEEEECTTCEEEEEEC
T ss_pred ------------ccccc---CCEEEEEecceEEEEEecC
Confidence 11112 2358889999999999764
|
| >d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase homologue TM1752 species: Thermotoga maritima [TaxId: 2336]
Probab=80.14 E-value=5.8 Score=41.61 Aligned_cols=110 Identities=10% Similarity=0.095 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1110 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~y 1110 (1351)
..+-|+++|++|.++||+||||+ |........ . .+......+.+...++..+...+.
T Consensus 59 ~l~~ld~~v~~~~~~gi~vildl---H~~pg~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~~w~~ 115 (325)
T d1vjza_ 59 FFEKIDRVIFWGEKYGIHICISL---HRAPGYSVN---K-----------------EVEEKTNLWKDETAQEAFIHHWSF 115 (325)
T ss_dssp GHHHHHHHHHHHHHHTCEEEEEE---EEETTEESC---T-----------------TSCCSSCTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEee---ccccccccC---c-----------------ccccccccccchhhHHHHHHHHHH
Confidence 37889999999999999999997 433221000 0 000112234455667777776777
Q ss_pred HHHHhC-CC--eEEEcCcccccccCCCCCCCCCCCcccccCCcCCh-hHHHHHHHHHHHHHhhCCCeEEEEc
Q psy9001 1111 YLEEYQ-FD--GFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT-DALIYLMVANKFLHDKYPEIITIAE 1178 (1351)
Q Consensus 1111 Wl~eyg-VD--GFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~-~~~~fl~~~~~~l~~~~Pd~ilIaE 1178 (1351)
.+++|. .. -.=+++...-. .. -+..... .-..+.+.+.+++++..|+.+++-+
T Consensus 116 ~a~~~~~~~~~i~~~el~NEP~---------~~------~~~~~~~~~~~~~~~~~~~~ir~~~p~~~v~v~ 172 (325)
T d1vjza_ 116 IARRYKGISSTHLSFNLINEPP---------FP------DPQIMSVEDHNSLIKRTITEIRKIDPERLIIID 172 (325)
T ss_dssp HHHHHTTSCTTTEEEECSSCCC---------CC------BTTTBCHHHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHhcccceeEEeeeccccCC---------CC------ccccchhhhhhhHHHHHHHHHhccCCCcEEEec
Confidence 777652 11 12233332110 00 0001112 2344677888899999999877654
|