Psyllid ID: psy9095

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
MNSISGRYLVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAESLQNVLIV
cccccccccccccEEEEEEEEEEccccEEEEEEEEccccccccccEEEEcccccHHHHHHHHHccccEEEEEEEcccEEEEEEEccEEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHcccccccHHHHHHcccEEEccccccHHHHHHHHHHHHHHcccccc
cccHHHHcccccccEEEEEEEEEcccccEEEEEEEEcccccccEEEEEccccccHHHHHHHHHccccEEEEEEEcccEEEEEEEccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccHHHHHccccccHHHHHHHHHEEEEccccccHHHHHHHHHHHHHHccccc
mnsisgrylvppnglviycgtivteegkekkvnidfepfkpintslylcdnKFHTEALTALLaddnkfgfivmdgngalfgtlqgntREVLHKFTvdlpkkhgrggqsALRFARLRMEKRHNYVRKVAEVATTLFitndkpniaGLILagsadfktelsqsdmfdprLQAKIIKLVDvsyggengFNQAIELAAESLQNVLIV
mnsisgrylvppnglVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTREVLHKFtvdlpkkhgrggqSALRFARLRMEKRHNYVRKVAEVATTlfitndkpnIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAEslqnvliv
MNSISGRYLVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAESLQNVLIV
******RYLVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAESL******
*NSISGRYLVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTREVLHKFTV*L************RFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAESLQNVLIV
MNSISGRYLVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAESLQNVLIV
MNSISGRYLVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKH***GQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAESLQNVLIV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNSISGRYLVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAESLQNVLIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query203 2.2.26 [Sep-21-2011]
Q9VPH7 438 Eukaryotic peptide chain yes N/A 0.955 0.442 0.969 1e-109
Q9GR88 435 Eukaryotic peptide chain N/A N/A 0.955 0.445 0.902 1e-103
P35615 437 Eukaryotic peptide chain N/A N/A 0.955 0.443 0.871 1e-99
Q5R4C7 437 Eukaryotic peptide chain yes N/A 0.955 0.443 0.871 1e-99
Q5U2Q7 437 Eukaryotic peptide chain yes N/A 0.955 0.443 0.871 1e-99
P62497 437 Eukaryotic peptide chain yes N/A 0.955 0.443 0.871 1e-99
Q8BWY3 437 Eukaryotic peptide chain yes N/A 0.955 0.443 0.871 1e-99
P62496 437 Eukaryotic peptide chain N/A N/A 0.955 0.443 0.871 1e-99
P62495 437 Eukaryotic peptide chain yes N/A 0.955 0.443 0.871 1e-99
Q0VCX5 437 Eukaryotic peptide chain yes N/A 0.955 0.443 0.871 1e-99
>sp|Q9VPH7|ERF1_DROME Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2 Back     alignment and function desciption
 Score =  394 bits (1012), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/194 (96%), Positives = 191/194 (98%)

Query: 10  VPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFG 69
           VPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFG
Sbjct: 88  VPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFG 147

Query: 70  FIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE 129
           FIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE
Sbjct: 148 FIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE 207

Query: 130 VATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQA 189
           VAT LFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQ+K+IKLVDVSYGGENGFNQA
Sbjct: 208 VATQLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQSKVIKLVDVSYGGENGFNQA 267

Query: 190 IELAAESLQNVLIV 203
           IELAAESLQNV  +
Sbjct: 268 IELAAESLQNVKFI 281
Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.
Drosophila melanogaster (taxid: 7227)
>sp|Q9GR88|ERF1_POLMI Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1 Back     alignment and function description
>sp|P35615|ERF1_XENLA Eukaryotic peptide chain release factor subunit 1 OS=Xenopus laevis GN=etf1 PE=2 SV=1 Back     alignment and function description
>sp|Q5R4C7|ERF1_PONAB Eukaryotic peptide chain release factor subunit 1 OS=Pongo abelii GN=ETF1 PE=2 SV=3 Back     alignment and function description
>sp|Q5U2Q7|ERF1_RAT Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3 Back     alignment and function description
>sp|P62497|ERF1_RABIT Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=1 SV=3 Back     alignment and function description
>sp|Q8BWY3|ERF1_MOUSE Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4 Back     alignment and function description
>sp|P62496|ERF1_MESAU Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3 Back     alignment and function description
>sp|P62495|ERF1_HUMAN Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3 Back     alignment and function description
>sp|Q0VCX5|ERF1_BOVIN Eukaryotic peptide chain release factor subunit 1 OS=Bos taurus GN=ETF1 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
157130302 438 eukaryotic peptide chain release factor 0.940 0.436 0.989 1e-108
312376908 395 hypothetical protein AND_11947 [Anophele 0.955 0.491 0.969 1e-108
442633656 447 eukaryotic release factor 1, isoform I [ 0.940 0.427 0.984 1e-108
170039548 438 eukaryotic peptide chain release factor 0.955 0.442 0.969 1e-108
442633654 437 eukaryotic release factor 1, isoform H [ 0.940 0.437 0.984 1e-108
289743055 438 eukaryotic release factor 1 [Glossina mo 0.955 0.442 0.969 1e-108
195591813 438 GD14876 [Drosophila simulans] gi|1941976 0.955 0.442 0.969 1e-108
350408757 437 PREDICTED: eukaryotic peptide chain rele 0.940 0.437 0.984 1e-107
156548282 437 PREDICTED: eukaryotic peptide chain rele 0.955 0.443 0.974 1e-107
195495938 438 GE19667 [Drosophila yakuba] gi|194181581 0.955 0.442 0.969 1e-107
>gi|157130302|ref|XP_001661879.1| eukaryotic peptide chain release factor subunit [Aedes aegypti] gi|108871939|gb|EAT36164.1| AAEL011742-PA [Aedes aegypti] Back     alignment and taxonomy information
 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/191 (98%), Positives = 190/191 (99%)

Query: 10  VPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFG 69
           VPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFG
Sbjct: 88  VPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFG 147

Query: 70  FIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE 129
           FIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE
Sbjct: 148 FIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE 207

Query: 130 VATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQA 189
           VAT LFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQ+KIIKLVDVSYGGENGFNQA
Sbjct: 208 VATQLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQSKIIKLVDVSYGGENGFNQA 267

Query: 190 IELAAESLQNV 200
           IELAAESLQNV
Sbjct: 268 IELAAESLQNV 278

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|312376908|gb|EFR23865.1| hypothetical protein AND_11947 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|442633656|ref|NP_001262105.1| eukaryotic release factor 1, isoform I [Drosophila melanogaster] gi|440216072|gb|AGB94798.1| eukaryotic release factor 1, isoform I [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|170039548|ref|XP_001847593.1| eukaryotic peptide chain release factor subunit [Culex quinquefasciatus] gi|167863111|gb|EDS26494.1| eukaryotic peptide chain release factor subunit [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|442633654|ref|NP_001262104.1| eukaryotic release factor 1, isoform H [Drosophila melanogaster] gi|198464677|ref|XP_001353321.2| GA19001 [Drosophila pseudoobscura pseudoobscura] gi|198149827|gb|EAL30824.2| GA19001 [Drosophila pseudoobscura pseudoobscura] gi|440216071|gb|AGB94797.1| eukaryotic release factor 1, isoform H [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|289743055|gb|ADD20275.1| eukaryotic release factor 1 [Glossina morsitans morsitans] Back     alignment and taxonomy information
>gi|195591813|ref|XP_002085633.1| GD14876 [Drosophila simulans] gi|194197642|gb|EDX11218.1| GD14876 [Drosophila simulans] Back     alignment and taxonomy information
>gi|350408757|ref|XP_003488503.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like [Bombus impatiens] gi|380018201|ref|XP_003693023.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like [Apis florea] Back     alignment and taxonomy information
>gi|156548282|ref|XP_001605843.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like isoform 1 [Nasonia vitripennis] gi|345485977|ref|XP_003425379.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|195495938|ref|XP_002095480.1| GE19667 [Drosophila yakuba] gi|194181581|gb|EDW95192.1| GE19667 [Drosophila yakuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
FB|FBgn0036974 438 eRF1 "eukaryotic release facto 0.955 0.442 0.969 4.5e-98
ZFIN|ZDB-GENE-021029-1 442 etf1 "eukaryotic translation t 0.955 0.438 0.886 5e-92
UNIPROTKB|E1BTM1 437 ETF1 "Uncharacterized protein" 0.955 0.443 0.871 6.5e-90
UNIPROTKB|Q0VCX5 437 ETF1 "Eukaryotic peptide chain 0.955 0.443 0.871 6.5e-90
UNIPROTKB|E2RBM3 437 ETF1 "Uncharacterized protein" 0.955 0.443 0.871 6.5e-90
UNIPROTKB|B7Z7P8 423 ETF1 "Eukaryotic peptide chain 0.955 0.458 0.871 6.5e-90
UNIPROTKB|P62495 437 ETF1 "Eukaryotic peptide chain 0.955 0.443 0.871 6.5e-90
UNIPROTKB|Q96CG1 404 ETF1 "Eukaryotic peptide chain 0.955 0.480 0.871 6.5e-90
UNIPROTKB|F2Z505 437 ETF1 "Uncharacterized protein" 0.955 0.443 0.871 6.5e-90
MGI|MGI:2385071 437 Etf1 "eukaryotic translation t 0.955 0.443 0.871 6.5e-90
FB|FBgn0036974 eRF1 "eukaryotic release factor 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
 Identities = 188/194 (96%), Positives = 191/194 (98%)

Query:    10 VPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFG 69
             VPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFG
Sbjct:    88 VPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFG 147

Query:    70 FIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE 129
             FIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE
Sbjct:   148 FIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE 207

Query:   130 VATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQA 189
             VAT LFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQ+K+IKLVDVSYGGENGFNQA
Sbjct:   208 VATQLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQSKVIKLVDVSYGGENGFNQA 267

Query:   190 IELAAESLQNVLIV 203
             IELAAESLQNV  +
Sbjct:   268 IELAAESLQNVKFI 281
GO:0003747 "translation release factor activity" evidence=NAS
GO:0018444 "translation release factor complex" evidence=NAS
GO:0006415 "translational termination" evidence=ISS;IMP;NAS
GO:0005829 "cytosol" evidence=ISS
GO:0008079 "translation termination factor activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=IEA;NAS
GO:0006605 "protein targeting" evidence=NAS
GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP
GO:0048102 "autophagic cell death" evidence=IEP
GO:0016149 "translation release factor activity, codon specific" evidence=IEA
GO:0007224 "smoothened signaling pathway" evidence=IGI
ZFIN|ZDB-GENE-021029-1 etf1 "eukaryotic translation termination factor 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BTM1 ETF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VCX5 ETF1 "Eukaryotic peptide chain release factor subunit 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RBM3 ETF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z7P8 ETF1 "Eukaryotic peptide chain release factor subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P62495 ETF1 "Eukaryotic peptide chain release factor subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q96CG1 ETF1 "Eukaryotic peptide chain release factor subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z505 ETF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2385071 Etf1 "eukaryotic translation termination factor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8BWY3ERF1_MOUSENo assigned EC number0.87110.95560.4439yesN/A
Q5U2Q7ERF1_RATNo assigned EC number0.87110.95560.4439yesN/A
Q5R4C7ERF1_PONABNo assigned EC number0.87110.95560.4439yesN/A
Q9VPH7ERF1_DROMENo assigned EC number0.96900.95560.4429yesN/A
P79063ERF1_SCHPONo assigned EC number0.74220.95560.4480yesN/A
Q9BMX0ERF1_DICDINo assigned EC number0.78350.95560.4399yesN/A
P35614ERF1Z_ARATHNo assigned EC number0.80610.95560.4459yesN/A
O59948ERF1_PODASNo assigned EC number0.79380.95560.4459yesN/A
Q9GR88ERF1_POLMINo assigned EC number0.90200.95560.4459N/AN/A
P62498ERF1_XENTRNo assigned EC number0.87110.95560.4439yesN/A
Q0VCX5ERF1_BOVINNo assigned EC number0.87110.95560.4439yesN/A
P12385ERF1_YEASTNo assigned EC number0.77310.95560.4439yesN/A
P62495ERF1_HUMANNo assigned EC number0.87110.95560.4439yesN/A
P62497ERF1_RABITNo assigned EC number0.87110.95560.4439yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
COG1503 411 COG1503, eRF1, Peptide chain release factor 1 (eRF 2e-83
TIGR03676357 TIGR03676, aRF1/eRF1, peptide chain release factor 3e-79
PRK04011 411 PRK04011, PRK04011, peptide chain release factor 1 1e-51
pfam03464129 pfam03464, eRF1_2, eRF1 domain 2 3e-51
pfam03463133 pfam03463, eRF1_1, eRF1 domain 1 2e-18
>gnl|CDD|224420 COG1503, eRF1, Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  253 bits (647), Expect = 2e-83
 Identities = 84/194 (43%), Positives = 115/194 (59%)

Query: 10  VPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFG 69
            P NGLV++ G ++   GK KKV +  EP +PINT LY CD+KF+ E L  +L D + +G
Sbjct: 83  TPENGLVLFVGDVLGGGGKTKKVTVVIEPPEPINTFLYRCDSKFYLEPLEEMLEDKDLYG 142

Query: 70  FIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE 129
            IV+D   A  G L+G   EVL + T D+P KH  GGQSA RF RL  E  H + +KV E
Sbjct: 143 LIVLDRIEATIGLLKGKRIEVLKELTSDVPGKHRAGGQSARRFERLIEEAAHEFYKKVGE 202

Query: 130 VATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQA 189
            A+  F+   K  + G+IL G    K E  + D     L+ K++ LVDVSY GE+G  + 
Sbjct: 203 AASEAFLPIAKKELKGIILGGPGPTKEEFVEGDYLHHELKKKVLGLVDVSYTGESGLREL 262

Query: 190 IELAAESLQNVLIV 203
           IE A ++L++V  V
Sbjct: 263 IEKAEDALKDVDYV 276

Length = 411
>gnl|CDD|234307 TIGR03676, aRF1/eRF1, peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information
>gnl|CDD|235198 PRK04011, PRK04011, peptide chain release factor 1; Provisional Back     alignment and domain information
>gnl|CDD|217575 pfam03464, eRF1_2, eRF1 domain 2 Back     alignment and domain information
>gnl|CDD|217574 pfam03463, eRF1_1, eRF1 domain 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 203
TIGR03676 403 aRF1/eRF1 peptide chain release factor 1, archaeal 100.0
PRK04011 411 peptide chain release factor 1; Provisional 100.0
TIGR00108 409 eRF peptide chain release factor eRF/aRF, subunit 100.0
COG1503 411 eRF1 Peptide chain release factor 1 (eRF1) [Transl 100.0
KOG0688|consensus 431 100.0
TIGR00111351 pelota probable translation factor pelota. This mo 100.0
PF03464133 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This do 99.97
COG1537352 PelA Predicted RNA-binding proteins [General funct 99.92
KOG2869|consensus 379 99.9
PF03463132 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This do 98.69
PF10116138 Host_attach: Protein required for attachment to ho 97.27
COG2433 652 Uncharacterized conserved protein [Function unknow 90.74
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information 
Probab=100.00  E-value=1.5e-51  Score=369.41  Aligned_cols=194  Identities=38%  Similarity=0.647  Sum_probs=184.7

Q ss_pred             CCCCCeEEEEEeeEecCCCeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcCCCcEEEEEEECCceEEEEEeCCeE
Q psy9095           9 LVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTR   88 (203)
Q Consensus         9 ~~p~~Glv~f~G~~~~~~G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~~~~~~vvvvd~g~a~i~~~~g~~~   88 (203)
                      ++|+||||+|||+++.++|+..+.|++++||.||++++|.||++|+++||.++++.+.++++|+||+++|.||+++|+.+
T Consensus        75 ~~p~nGlv~f~g~~~~~~~~~~~~t~~iep~~pi~~~~y~cd~~f~lepL~e~l~~~~~~g~VvvD~~~A~i~~l~g~~~  154 (403)
T TIGR03676        75 KPPENGLVLFAGMVPTGGGTEKMETYVIEPPEPINTYLYRCDSKFYLEPLEEMLEEKDVYGLIVLDRREATIGLLKGKRI  154 (403)
T ss_pred             CCCCCeEEEEEeeecCCCCceeEEEEEEeCCCceEEEEecCCChHHHHHHHHHhcCCCCEEEEEEecCceEEEEEcCCEE
Confidence            69999999999999998886666699999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccCCCChhh
Q psy9095          89 EVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRL  168 (203)
Q Consensus        89 ~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~L~~~l  168 (203)
                      +.++++++++|+||++||||++||+|+|++.+++||++||+.+.++|...+..++++|||||||++|++|.+++||++++
T Consensus       155 e~~~~i~~~vp~K~~~GGqS~~Rf~R~~e~~~~~f~~~Vae~~~~~f~~~~~~~v~~lILaGpg~~K~~f~~~~~L~~~l  234 (403)
T TIGR03676       155 EVLKELTSGVPGKHRAGGQSARRFERLIEIAAHEFYKRVGEAANEAFLPLKDKKLKGILIGGPGPTKEEFAEGDYLHHEL  234 (403)
T ss_pred             EEEEEEEeeCCCCccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccEEEEeCCHHHHHHHhhhhhhhHHH
Confidence            99999999999999999999999999999999999999999999998765445799999999999999999777999999


Q ss_pred             hhceeEEEECCCCCcchHHHHHHHHHhhhccccc
Q psy9095         169 QAKIIKLVDVSYGGENGFNQAIELAAESLQNVLI  202 (203)
Q Consensus       169 ~~k~i~~~~~s~~~~~gl~E~l~~~~~~l~~~~~  202 (203)
                      +++++.++|+||++++|++|++++++++|++.++
T Consensus       235 ~~kvi~~vd~s~~~~~Gl~Evl~~~~~~L~~~k~  268 (403)
T TIGR03676       235 KKKILGLFDVSYTGESGLRELVEKAEDLLKDLEL  268 (403)
T ss_pred             HhhEEEEEecCCCCccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998765

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
>PRK04011 peptide chain release factor 1; Provisional Back     alignment and domain information
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1 Back     alignment and domain information
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0688|consensus Back     alignment and domain information
>TIGR00111 pelota probable translation factor pelota Back     alignment and domain information
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information
>KOG2869|consensus Back     alignment and domain information
>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ] Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
3j2k_6 411 Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ 1e-101
3e1y_A 451 Crystal Structure Of Human Erf1ERF3 COMPLEX Length 1e-101
1dt9_A 437 The Crystal Structure Of Human Eukaryotic Release F 1e-100
3e20_C 441 Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX Lengt 1e-84
2hst_A143 Solution Structure Of The Middle Domain Of Human Eu 1e-66
2llx_A150 Solution Structure Of The N-Terminal Domain Of Huma 6e-28
2lgt_A144 Backbone 1h, 13c, And 15n Chemical Shift Assignment 1e-25
3agk_A373 Crystal Structure Of Archaeal Translation Terminati 7e-22
>pdb|3J2K|6 Chain 6, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 411 Back     alignment and structure 
Iteration: 1

 Score =  362 bits (930), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 169/191 (88%), Positives = 182/191 (95%)
Query: 10  VPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFG 69
           VPPNGLV+YCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALL+DD+KFG
Sbjct: 79  VPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFG 138
Query: 70  FIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE 129
           FIV+DG+GALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE
Sbjct: 139 FIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE 198
Query: 130 VATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQA 189
            A  LFI+ DK N+AGL+LAGSADFKTELSQSDMFD RLQ+K++KLVD+SYGGENGFNQA
Sbjct: 199 TAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQA 258
Query: 190 IELAAESLQNV 200
           IEL+ E L NV
Sbjct: 259 IELSTEVLSNV 269
>pdb|3E1Y|A Chain A, Crystal Structure Of Human Erf1ERF3 COMPLEX Length = 451 Back     alignment and structure
>pdb|1DT9|A Chain A, The Crystal Structure Of Human Eukaryotic Release Factor Erf1-Mechanism Of Stop Codon Recognition And Peptidyl-Trna Hydrolysis Length = 437 Back     alignment and structure
>pdb|3E20|C Chain C, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX Length = 441 Back     alignment and structure
>pdb|2HST|A Chain A, Solution Structure Of The Middle Domain Of Human Eukaryotic Translation Termination Factor Erf1 Length = 143 Back     alignment and structure
>pdb|2LLX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Polypeptide Chain Release Factor Erf1 Length = 150 Back     alignment and structure
>pdb|2LGT|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For Qfm(Y)f Length = 144 Back     alignment and structure
>pdb|3AGK|A Chain A, Crystal Structure Of Archaeal Translation Termination Factor, Arf1 Length = 373 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
1dt9_A 437 ERF1, protein (eukaryotic peptide chain release fa 2e-58
3e20_C 441 Eukaryotic peptide chain release factor subunit 1; 2e-58
3agk_A373 Peptide chain release factor subunit 1; translatio 2e-42
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 7e-35
2vgn_A 386 DOM34; translation termination factor, protein bio 1e-30
3mca_B 390 Protein DOM34, elongation factor 1 alpha-like prot 1e-30
3oby_A 352 Protein pelota homolog; SM fold, hydrolase; 2.90A 2e-29
3agj_B 358 Protein pelota homolog; GTP binding, translation-h 2e-27
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 2e-27
2qi2_A 347 Pelota, cell division protein pelota related prote 8e-25
3ir9_A 166 Peptide chain release factor subunit 1; structural 5e-04
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Length = 437 Back     alignment and structure
 Score =  188 bits (478), Expect = 2e-58
 Identities = 169/191 (88%), Positives = 182/191 (95%)

Query: 10  VPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFG 69
           VPPNGLV+YCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALL+DD+KFG
Sbjct: 88  VPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFG 147

Query: 70  FIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE 129
           FIV+DG+GALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE
Sbjct: 148 FIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE 207

Query: 130 VATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQA 189
            A  LFI+ DK N+AGL+LAGSADFKTELSQSDMFD RLQ+K++KLVD+SYGGENGFNQA
Sbjct: 208 TAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQA 267

Query: 190 IELAAESLQNV 200
           IEL+ E L NV
Sbjct: 268 IELSTEVLSNV 278
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Length = 441 Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Length = 373 Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Length = 357 Back     alignment and structure
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Length = 386 Back     alignment and structure
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 390 Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Length = 352 Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Length = 358 Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Length = 364 Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Length = 347 Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Length = 166 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
3e20_C 441 Eukaryotic peptide chain release factor subunit 1; 100.0
3agk_A373 Peptide chain release factor subunit 1; translatio 100.0
1dt9_A 437 ERF1, protein (eukaryotic peptide chain release fa 100.0
3mca_B 390 Protein DOM34, elongation factor 1 alpha-like prot 100.0
2vgn_A 386 DOM34; translation termination factor, protein bio 100.0
3agj_B 358 Protein pelota homolog; GTP binding, translation-h 100.0
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 100.0
3oby_A 352 Protein pelota homolog; SM fold, hydrolase; 2.90A 100.0
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 100.0
2qi2_A347 Pelota, cell division protein pelota related prote 99.97
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=2.5e-46  Score=338.10  Aligned_cols=192  Identities=73%  Similarity=1.170  Sum_probs=51.5

Q ss_pred             CCCCCeEEEEEeeEecCC--CeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcCCCcEEEEEEECCceEEEEEeCC
Q psy9095           9 LVPPNGLVIYCGTIVTEE--GKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGN   86 (203)
Q Consensus         9 ~~p~~Glv~f~G~~~~~~--G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~~~~~~vvvvd~g~a~i~~~~g~   86 (203)
                      ++|+||+|+|||.+++++  |++|  |++|+||.||++++|.||++|+++||+++++++.++++|+||+++|+++++.|+
T Consensus        92 ~vp~~g~v~~~G~~~~e~~~~~~~--T~~iep~~pi~i~k~~~w~~~~le~L~eal~~~~~~gvVvvD~~ga~i~~l~g~  169 (441)
T 3e20_C           92 KVPDNGLVIYCGEVIMEGNKTRKL--NIDFEPFKPINTSQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGS  169 (441)
T ss_dssp             SCTTSCCEEEEEEECCGGGCCEEE--EEEECCSCCTTCCEEEEESSCCCTTGGGGC------------------------
T ss_pred             cCCCCCEEEEeceeeccCCceeEE--EEEecCCCceEEEEEccCCHHHHHHHHHHhCccCcEEEEEEecCCeEEEEEecC
Confidence            699999999999998776  6666  999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccCCCCh
Q psy9095          87 TREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDP  166 (203)
Q Consensus        87 ~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~L~~  166 (203)
                      .++++++++.++|+||++|||||+||+|+|++++++||++|++.+.++|...++..+++|||||||++|++|.+.++|++
T Consensus       170 ~~evl~~i~~~vPkK~~~GG~S~~RF~R~ree~~~~f~~~Vae~l~~~~~~~~~~~v~~lVlaGPg~~k~~f~~~~~l~~  249 (441)
T 3e20_C          170 AREVLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFITDDKPNVAGIVLAGSADFKTELGQSDLFDQ  249 (441)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEEEEEEecCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcCEEEEECCHHHHHHHHHhcccCH
Confidence            99999999999999999999999999999999999999999999999986544568999999999999999997779999


Q ss_pred             hhhhceeEEEECCCCCcchHHHHHHHHHhhhccccc
Q psy9095         167 RLQAKIIKLVDVSYGGENGFNQAIELAAESLQNVLI  202 (203)
Q Consensus       167 ~l~~k~i~~~~~s~~~~~gl~E~l~~~~~~l~~~~~  202 (203)
                      +++++++.++|+||++++|++|+|++++++|++.++
T Consensus       250 ~L~~kvv~~vdvs~gg~~Gl~EvL~~~~~~L~d~k~  285 (441)
T 3e20_C          250 RLQSRIIKTVDVSYGGDAGFNQAIELAADTLSNVKY  285 (441)
T ss_dssp             --------------------------------CHHH
T ss_pred             HHHhheEEEEECCCCCccCHHHHHHHHHHHHHHHHH
Confidence            999998889999999999999999999999988764
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Back     alignment and structure
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Back     alignment and structure
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Back     alignment and structure
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 203
d1dt9a1134 c.55.4.2 (A:143-276) Middle domain of eukaryotic p 3e-66
d1dt9a3138 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic 1e-29
d2vgna2142 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisi 4e-20
d2qi2a2117 c.55.4.2 (A:127-243) Cell division protein pelota 7e-16
>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: ERF1/Dom34 middle domain-like
domain: Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  197 bits (503), Expect = 3e-66
 Identities = 114/133 (85%), Positives = 125/133 (93%)

Query: 65  DNKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYV 124
           D+KFGFIV+DG+GALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYV
Sbjct: 1   DSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYV 60

Query: 125 RKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGEN 184
           RKVAE A  LFI+ DK N+AGL+LAGSADFKTELSQSDMFD RLQ+K++KLVD+SYGGEN
Sbjct: 61  RKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGEN 120

Query: 185 GFNQAIELAAESL 197
           GFNQAIEL+ E L
Sbjct: 121 GFNQAIELSTEVL 133
>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 138 Back     information, alignment and structure
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 142 Back     information, alignment and structure
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 117 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
d1dt9a1134 Middle domain of eukaryotic peptide chain release 100.0
d2vgna2142 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 99.95
d2qi2a2117 Cell division protein pelota {Thermoplasma acidoph 99.91
d1dt9a3138 N-terminal domain of eukaryotic peptide chain rele 99.71
d2vgna1135 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 97.77
d2qi2a1126 Cell division protein pelota {Thermoplasma acidoph 97.42
>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: ERF1/Dom34 middle domain-like
domain: Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-43  Score=265.13  Aligned_cols=133  Identities=85%  Similarity=1.279  Sum_probs=129.0

Q ss_pred             CcEEEEEEECCceEEEEEeCCeEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccE
Q psy9095          66 NKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAG  145 (203)
Q Consensus        66 ~~~~vvvvd~g~a~i~~~~g~~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~  145 (203)
                      .+||+||||+++|+||++.|+.+++++.++++||+||++|||||+||+|+|++++++||++|+|.+.++|++.+..++++
T Consensus         2 ~~yGliviD~~~a~ig~l~G~~~~v~~~~~~~VpgKh~~GGQS~~RF~Rlre~~~~~~~kkVae~a~~~Fl~~~~~~~~g   81 (134)
T d1dt9a1           2 SKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAG   81 (134)
T ss_dssp             CEEEEEECCSSCCCEEEEETTEEEEEECCCCCCSCCCCSSCSCSHHHHHHHHHHTTTTTTHHHHHTTTTTSCSSSCSSSC
T ss_pred             CcEEEEEEECCCcEEEEEeCCeEEEEEEEeeccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999998766678999


Q ss_pred             EEEecChhhHHhhhccCCCChhhhhceeEEEECCCCCcchHHHHHHHHHhhhc
Q psy9095         146 LILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAESLQ  198 (203)
Q Consensus       146 iIiaGpg~~k~~f~~~~~L~~~l~~k~i~~~~~s~~~~~gl~E~l~~~~~~l~  198 (203)
                      |||||||++|++|++++||++++++++++++|++|++++||+|++++|+|+|+
T Consensus        82 iilgGpg~~K~~f~~~~~l~~~l~~kii~~~d~~y~ge~Gl~e~i~~s~d~L~  134 (134)
T d1dt9a1          82 LVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLS  134 (134)
T ss_dssp             CEEEESTTTTHHHHSCSSSCTTTTTTCCCEEECSSCTTHHHHHHHHHHSSTTT
T ss_pred             EEEeCChHHHHHHhhccccCHHHHhceeEEEECCCCCchhHHHHHHHHHhhhC
Confidence            99999999999999999999999999999999999999999999999999985
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure