Psyllid ID: psy9118

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MFDRGTITAKVLSSRNRREKEDRIGESQPFQERTLSVQDKIRSGRAMADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEG
Secondary Structure (PSIPRED)
ccccccHHHHHccHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcEEEEcccEEEEEEEcccccccccccEEEEEcccccEEEEEEEEEEEEcccccccccccccEEEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEEHHHHcccccHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcEEEEccccEEEEEEcccEcccccccccEEEEEEEEEEEEEEEEEEEcccccccccccccEEEEEEEEEEEEcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mfdrgtitAKVLSSRnrrekedrigesqpfqertLSVQDKIRSGRAMADSLLVGIVSLFSLLLVFNysfhkieeghvgvyfrggallstisgpgfhamipFITTFRHVQVTLqtdevknvpcgtsggvmiyFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVrvtkpkipeTIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEG
Flexible Loop (DISEMBL)
mfdrgtitakvlssrnrrekedrigesqpfqertlsvqDKIRSGRAMADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMapglfiqavrvtkpkipETIRKNYELMEAEKTKLLisiqhqkvvekdaetERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEG
Low Complexity Region (SEG)
MFDRGTITAKVLSSRNRREKEDRIGESQPFQERTLSVQDKIRSGRAMADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEG
Disordered region (IsUnstruct)
**********************************************MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQK**********************************************
Disordered Region (DISOPRED)
*********************************************AMADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKN***GTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETI************************************************************QRVA*I**
Disordered Region (DISEMBL)
MFDRGTITAKVL*********************TLSVQDKIRSGRAMADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQK***************
Disordered Region (DISPRO)
***RGTITAKVLS************ESQPFQERTLSVQDKIRSGRAMADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVA****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFDRGTITAKVLSSRNRREKEDRIGESQPFQERTLSVQDKIRSGRAMADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
Q6DKC0	330	Erlin-2-B OS=Xenopus laev	N/A	N/A	0.767	0.681	0.782	1e-106
Q28J34	335	Erlin-2 OS=Xenopus tropic	yes	N/A	0.767	0.671	0.777	1e-106
Q91X78	346	Erlin-1 OS=Mus musculus G	yes	N/A	0.819	0.693	0.743	1e-106
Q5XH03	335	Erlin-2-A OS=Xenopus laev	N/A	N/A	0.767	0.671	0.777	1e-105
Q5R7C5	339	Erlin-2 OS=Pongo abelii G	yes	N/A	0.819	0.707	0.730	1e-105
O94905	339	Erlin-2 OS=Homo sapiens G	yes	N/A	0.819	0.707	0.730	1e-105
Q8BFZ9	340	Erlin-2 OS=Mus musculus G	no	N/A	0.819	0.705	0.730	1e-104
B5DEH2	339	Erlin-2 OS=Rattus norvegi	no	N/A	0.819	0.707	0.730	1e-104
Q58EG2	342	Erlin-1 OS=Danio rerio GN	yes	N/A	0.836	0.716	0.700	1e-104
O75477	346	Erlin-1 OS=Homo sapiens G	no	N/A	0.767	0.650	0.773	1e-104

>sp|Q6DKC0|ERL2B_XENLA Erlin-2-B OS=Xenopus laevis GN=erlin2-b PE=2 SV=1

 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 176/225 (78%), Positives = 207/225 (92%)

Query: 68  SFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGG 127
           + HKIEEGHVGVY+RGGALL+T SGPGFH M+PFIT+F+ VQ TLQTDEVKNVPCGTSGG
Sbjct: 22  AIHKIEEGHVGVYYRGGALLTTTSGPGFHLMLPFITSFKSVQSTLQTDEVKNVPCGTSGG 81

Query: 128 VMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLF 187
           VMIYFDRIEVVN L  S+VYDIVKNYTADYDKALIFNK+HHELNQFCS+HNL EVYI+LF
Sbjct: 82  VMIYFDRIEVVNYLISSAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHNLQEVYIELF 141

Query: 188 DQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQK 247
           DQIDE+LK ALQ++LN MAPG+ IQAVRVTKP IPE IR+NYELME+EKTKLLI+ Q QK
Sbjct: 142 DQIDEDLKLALQKDLNLMAPGIIIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQK 201

Query: 248 VVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 292
           VVEK+AETERK+A+IEAEK AQ+A+I+Y QKVME+E+++++++IE
Sbjct: 202 VVEKEAETERKKAIIEAEKVAQVAQIKYGQKVMEKETEKKISEIE 246

Mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs).
Xenopus laevis (taxid: 8355)

>sp|Q28J34|ERLN2_XENTR Erlin-2 OS=Xenopus tropicalis GN=erlin2 PE=2 SV=1

 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 175/225 (77%), Positives = 206/225 (91%)

Query: 68  SFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGG 127
           + HKIEEGHVGVY+RGGALL++ SGPGFH M+PFIT+F+ VQ T+QTDEVKNVPCGTSGG
Sbjct: 22  AIHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITSFKSVQSTMQTDEVKNVPCGTSGG 81

Query: 128 VMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLF 187
           VMIYFDRIEVVN L  S+VYDIVKNYTADYDK LIFNK+HHELNQFCS+HNL EVYI+LF
Sbjct: 82  VMIYFDRIEVVNYLIPSAVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHNLQEVYIELF 141

Query: 188 DQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQK 247
           DQIDENLK ALQ++LN MAPGL IQAVRVTKP IPE IR+NYELME+EKTKLLI+ Q QK
Sbjct: 142 DQIDENLKLALQKDLNSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQK 201

Query: 248 VVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 292
           VVEK+AETERK+A+IEAEK AQ+A+I+Y QKVME+E+++++++IE
Sbjct: 202 VVEKEAETERKKAIIEAEKVAQVAEIKYGQKVMEKETEKKISEIE 246

Mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs).

Xenopus tropicalis (taxid: 8364)

>sp|Q91X78|ERLN1_MOUSE Erlin-1 OS=Mus musculus GN=Erlin1 PE=1 SV=1

 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/242 (74%), Positives = 214/242 (88%), Gaps = 2/242 (0%)

Query: 51  LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV 110
           L+  +V L ++LL    S HKIEEGH+ VY+RGGALL++ SGPG+H M+PFITTFR VQ 
Sbjct: 7   LVAAVVGLVAILLYA--SIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQT 64

Query: 111 TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHEL 170
           TLQTDEVKNVPCGTSGGVMIY DRIEVVN+L+  +V+DIV+NYTADYDK LIFNK+HHEL
Sbjct: 65  TLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHEL 124

Query: 171 NQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 230
           NQFCS H L EVYI+LFDQIDENLK ALQ++LN MAPGL IQAVRVTKPKIPE IR+N+E
Sbjct: 125 NQFCSAHTLQEVYIELFDQIDENLKQALQKDLNTMAPGLTIQAVRVTKPKIPEAIRRNFE 184

Query: 231 LMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 290
           LMEAEKTKLLI+ Q QKVVEK+AETERKRAVIEAEK AQ+AKI+++QKVME+E+++R+++
Sbjct: 185 LMEAEKTKLLIAAQKQKVVEKEAETERKRAVIEAEKIAQVAKIRFQQKVMEKETEKRISE 244

Query: 291 IE 292
           IE
Sbjct: 245 IE 246

Component of the ERLIN1/ERLIN2 complex which mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs).

Mus musculus (taxid: 10090)

>sp|Q5XH03|ERL2A_XENLA Erlin-2-A OS=Xenopus laevis GN=erlin2-a PE=2 SV=1

 Score =  380 bits (976), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 175/225 (77%), Positives = 205/225 (91%)

Query: 68  SFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGG 127
           + HKIEEGHVGVY+RGGALLST SGPGFH M PFIT+F+ VQ TLQTDE+KNVPCGTSGG
Sbjct: 22  AIHKIEEGHVGVYYRGGALLSTTSGPGFHLMFPFITSFKSVQSTLQTDEIKNVPCGTSGG 81

Query: 128 VMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLF 187
           VMIYFDRIEVVN L  S+VYDIVKN+TADYDKALIFNK+HHELNQFCS+HNL EVYI+LF
Sbjct: 82  VMIYFDRIEVVNYLISSAVYDIVKNFTADYDKALIFNKIHHELNQFCSVHNLQEVYIELF 141

Query: 188 DQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQK 247
           DQIDENLK ALQ +LN MAPG+ IQAVRVTKPKIPE I +N+ELME EKTKLLI+ Q QK
Sbjct: 142 DQIDENLKLALQEDLNLMAPGIIIQAVRVTKPKIPEAIGRNFELMEGEKTKLLIAAQKQK 201

Query: 248 VVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 292
           VVEK+AETERK+A+IEAEK AQ+A+I+Y+QKVME+E+++++++IE
Sbjct: 202 VVEKEAETERKKAIIEAEKVAQVAQIKYKQKVMEKETEKKISEIE 246

Mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs).

Xenopus laevis (taxid: 8355)

>sp|Q5R7C5|ERLN2_PONAB Erlin-2 OS=Pongo abelii GN=ERLIN2 PE=2 SV=1

 Score =  380 bits (976), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 176/241 (73%), Positives = 212/241 (87%), Gaps = 1/241 (0%)

Query: 52  LVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVT 111
           +V + S F    +F+ + HKIEEGH+GVY+RGGALL++ SGPGFH M+PFIT+++ VQ T
Sbjct: 7   VVAVASSFFCASLFS-AVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTT 65

Query: 112 LQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELN 171
           LQTDEVKNVPCGTSGGVMIYFDRIEVVN L  ++VYDIVKNYTADYDKALIFNK+HHELN
Sbjct: 66  LQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELN 125

Query: 172 QFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 231
           QFCS+H L EVYI+LFDQIDENLK ALQ++L  MAPGL IQAVRVTKP IPE IR+NYEL
Sbjct: 126 QFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYEL 185

Query: 232 MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 291
           ME+EKTKLLI+ Q QKVVEK+AETERK+A+IEAEK AQ+A+I Y QKVME+E+++++++I
Sbjct: 186 MESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEI 245

Query: 292 E 292
           E
Sbjct: 246 E 246

Component of the ERLIN1/ERLIN2 complex which mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs). Also involved in ITPR1 degradation by the ERAD pathway.

Pongo abelii (taxid: 9601)

>sp|O94905|ERLN2_HUMAN Erlin-2 OS=Homo sapiens GN=ERLIN2 PE=1 SV=1

 Score =  380 bits (976), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 176/241 (73%), Positives = 212/241 (87%), Gaps = 1/241 (0%)

Query: 52  LVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVT 111
           +V + S F    +F+ + HKIEEGH+GVY+RGGALL++ SGPGFH M+PFIT+++ VQ T
Sbjct: 7   VVAVASSFFCASLFS-AVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTT 65

Query: 112 LQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELN 171
           LQTDEVKNVPCGTSGGVMIYFDRIEVVN L  ++VYDIVKNYTADYDKALIFNK+HHELN
Sbjct: 66  LQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELN 125

Query: 172 QFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 231
           QFCS+H L EVYI+LFDQIDENLK ALQ++L  MAPGL IQAVRVTKP IPE IR+NYEL
Sbjct: 126 QFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYEL 185

Query: 232 MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 291
           ME+EKTKLLI+ Q QKVVEK+AETERK+A+IEAEK AQ+A+I Y QKVME+E+++++++I
Sbjct: 186 MESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEI 245

Query: 292 E 292
           E
Sbjct: 246 E 246

Component of the ERLIN1/ERLIN2 complex which mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs). Also involved in ITPR1 degradation by the ERAD pathway.

Homo sapiens (taxid: 9606)

>sp|Q8BFZ9|ERLN2_MOUSE Erlin-2 OS=Mus musculus GN=Erlin2 PE=1 SV=1

 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/241 (73%), Positives = 212/241 (87%), Gaps = 1/241 (0%)

Query: 52  LVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVT 111
           +V + S F    +F+ + HKIEEGH+GVY+RGGALL++ SGPGFH M+PFIT+++ VQ T
Sbjct: 7   VVAVASSFFCASLFS-AVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTT 65

Query: 112 LQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELN 171
           LQTDEVKNVPCGTSGGVMIYFDRIEVVN L  ++VYDIVKNYTADYDKALIFNK+HHELN
Sbjct: 66  LQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELN 125

Query: 172 QFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 231
           QFCS+H L EVYI+LFDQIDENLK ALQ++L  MAPGL IQAVRVTKP IPE IR+NYEL
Sbjct: 126 QFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYEL 185

Query: 232 MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 291
           ME+EKTKLLI+ Q QKVVEK+AETERK+A+IEAEK AQ+A+I Y QKVME+E+++++++I
Sbjct: 186 MESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEI 245

Query: 292 E 292
           E
Sbjct: 246 E 246

Component of the ERLIN1/ERLIN2 complex which mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs). Also involved in ITPR1 degradation by the ERAD pathway.

Mus musculus (taxid: 10090)

>sp|B5DEH2|ERLN2_RAT Erlin-2 OS=Rattus norvegicus GN=Erlin2 PE=1 SV=1

 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/241 (73%), Positives = 211/241 (87%), Gaps = 1/241 (0%)

Query: 52  LVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVT 111
           +V + S F    +F+ + HKIEEGH+GVY+RGGALL++ SGPGFH M+PFIT+++ VQ T
Sbjct: 7   VVAVASSFFCASLFS-AVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTT 65

Query: 112 LQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELN 171
           LQTDEVKNVPCGTSGGVMIYFDRIEVVN L   +VYDIVKNYTADYDKALIFNK+HHELN
Sbjct: 66  LQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPHAVYDIVKNYTADYDKALIFNKIHHELN 125

Query: 172 QFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 231
           QFCS+H L EVYI+LFDQIDENLK ALQ++L  MAPGL IQAVRVTKP IPE IR+NYEL
Sbjct: 126 QFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYEL 185

Query: 232 MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 291
           ME+EKTKLLI+ Q QKVVEK+AETERK+A+IEAEK AQ+A+I Y QKVME+E+++++++I
Sbjct: 186 MESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEI 245

Query: 292 E 292
           E
Sbjct: 246 E 246

Component of the ERLIN1/ERLIN2 complex which mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs). Also involved in ITPR1 degradation by the ERAD pathway.

Rattus norvegicus (taxid: 10116)

>sp|Q58EG2|ERLN1_DANRE Erlin-1 OS=Danio rerio GN=erlin1 PE=2 SV=1

 Score =  378 bits (970), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 173/247 (70%), Positives = 218/247 (88%), Gaps = 2/247 (0%)

Query: 46  AMADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTF 105
           A   +++  +  L ++LL  + S HKIEEGH+ VY+RGGALL++ +GPG+H M+PFIT++
Sbjct: 2   AHVGAVVAAMAGLMAILL--HSSIHKIEEGHLAVYYRGGALLTSPNGPGYHIMLPFITSY 59

Query: 106 RHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNK 165
           R VQ TLQTDE+KNVPCGTSGGVMIYFDRIEVVN+L  +SV DIV+NYTADYDK LIFNK
Sbjct: 60  RSVQTTLQTDEIKNVPCGTSGGVMIYFDRIEVVNMLIPTSVVDIVRNYTADYDKTLIFNK 119

Query: 166 VHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETI 225
           +HHELNQFCS+H L EVYI+LFD IDENLKTALQ++LN MAPGL IQAVRVTKPKIPE I
Sbjct: 120 IHHELNQFCSVHTLQEVYIELFDIIDENLKTALQKDLNCMAPGLTIQAVRVTKPKIPEAI 179

Query: 226 RKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESK 285
           R+NYELMEAEKT+LLI++Q QKVVEK+AETERK+A+IEA+K AQ+A+IQ++QKVME+E++
Sbjct: 180 RRNYELMEAEKTRLLITVQTQKVVEKEAETERKKAIIEAQKVAQVAEIQFQQKVMEKETE 239

Query: 286 QRVAKIE 292
           +++++IE
Sbjct: 240 KKISEIE 246

Mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs).

Danio rerio (taxid: 7955)

>sp|O75477|ERLN1_HUMAN Erlin-1 OS=Homo sapiens GN=ERLIN1 PE=1 SV=1

 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 174/225 (77%), Positives = 205/225 (91%)

Query: 68  SFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGG 127
           S HKIEEGH+ VY+RGGALL++ SGPG+H M+PFITTFR VQ TLQTDEVKNVPCGTSGG
Sbjct: 22  SIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQTTLQTDEVKNVPCGTSGG 81

Query: 128 VMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLF 187
           VMIY DRIEVVN+L+  +V+DIV+NYTADYDK LIFNK+HHELNQFCS H L EVYI+LF
Sbjct: 82  VMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQEVYIELF 141

Query: 188 DQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQK 247
           DQIDENLK ALQ++LN MAPGL IQAVRVTKPKIPE IR+N+ELMEAEKTKLLI+ Q QK
Sbjct: 142 DQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAQKQK 201

Query: 248 VVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 292
           VVEK+AETERK+AVIEAEK AQ+AKI+++QKVME+E+++R+++IE
Sbjct: 202 VVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKETEKRISEIE 246

Component of the ERLIN1/ERLIN2 complex which mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
332018226	327	Erlin-1 [Acromyrmex echinatior]	0.839	0.752	0.788	1e-115
340722918	314	PREDICTED: erlin-1-like [Bombus terrestr	0.839	0.783	0.788	1e-115
383850192	328	PREDICTED: erlin-1-like [Megachile rotun	0.839	0.75	0.788	1e-115
380022736	324	PREDICTED: erlin-1-like [Apis florea]	0.839	0.759	0.780	1e-114
110761744	324	PREDICTED: erlin-1-like [Apis mellifera]	0.839	0.759	0.780	1e-114
307198436	326	Erlin-1 [Harpegnathos saltator]	0.839	0.754	0.784	1e-114
307172340	326	Erlin-1 [Camponotus floridanus]	0.839	0.754	0.788	1e-114
350403683	814	PREDICTED: hypothetical protein LOC10074	0.784	0.282	0.821	1e-113
91088039	327	PREDICTED: similar to SPFH domain family	0.836	0.749	0.792	1e-113
427784217	365	Putative prohibitin-related membrane pro	0.839	0.673	0.768	1e-112

>gi|332018226|gb|EGI58831.1| Erlin-1 [Acromyrmex echinatior]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 194/246 (78%), Positives = 222/246 (90%)

Query: 47  MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 106
           M D  ++ I  L   ++VFN+S H+IEEGHVGVYFRGGALL  +S PGFH MIPF+TT+R
Sbjct: 1   MFDQRIIAICFLVCFVIVFNFSLHRIEEGHVGVYFRGGALLPQVSNPGFHMMIPFLTTYR 60

Query: 107 HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 166
            VQVTLQTDEVKNVPCGTSGGV+IYFDRIEVVN+L  +SVY++V+N+TADYD+ LIFNKV
Sbjct: 61  SVQVTLQTDEVKNVPCGTSGGVIIYFDRIEVVNILDANSVYNMVRNFTADYDRTLIFNKV 120

Query: 167 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 226
           HHELNQFCS+H LHEVYIDLFDQIDENLKTALQR+LNE+APGL IQAVRVTKPKIPETIR
Sbjct: 121 HHELNQFCSVHTLHEVYIDLFDQIDENLKTALQRDLNELAPGLNIQAVRVTKPKIPETIR 180

Query: 227 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 286
           KNYELMEAEKTKLLIS QHQKVVEKDAET+RK+A+IEAEKEAQ+AKIQY QK+ME+ES Q
Sbjct: 181 KNYELMEAEKTKLLISTQHQKVVEKDAETDRKKAIIEAEKEAQVAKIQYNQKIMEKESLQ 240

Query: 287 RVAKIE 292
           ++A IE
Sbjct: 241 QMAAIE 246

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722918|ref|XP_003399846.1| PREDICTED: erlin-1-like [Bombus terrestris]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 194/246 (78%), Positives = 221/246 (89%)

Query: 47  MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 106
           M D  ++GI     L +VFN+S H+IEEGHVGVYFRGGALL  +S PGFH MIP +TT+R
Sbjct: 1   MFDQSIIGICFCVCLAIVFNFSLHRIEEGHVGVYFRGGALLPQVSNPGFHMMIPLLTTYR 60

Query: 107 HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 166
            VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN+L  SSVY++V+N+TADYD+ LIFNK+
Sbjct: 61  SVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNILDASSVYNMVRNFTADYDQTLIFNKI 120

Query: 167 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 226
           HHELNQFCS+H LHEVYIDLFDQIDENLKTALQ++LN++APGL I AVRVTKPKIPETIR
Sbjct: 121 HHELNQFCSVHTLHEVYIDLFDQIDENLKTALQKDLNDLAPGLSIHAVRVTKPKIPETIR 180

Query: 227 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 286
           KNYELMEAEKTKLLIS QHQKVVEKDAET+RK+AVIEAEKEAQ+AKIQY QK+ME+ES+Q
Sbjct: 181 KNYELMEAEKTKLLISTQHQKVVEKDAETDRKKAVIEAEKEAQVAKIQYIQKIMEKESQQ 240

Query: 287 RVAKIE 292
           R+A IE
Sbjct: 241 RIAAIE 246

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850192|ref|XP_003700681.1| PREDICTED: erlin-1-like [Megachile rotundata]

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 194/246 (78%), Positives = 220/246 (89%)

Query: 47  MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 106
           M D  ++GI     L +VFN+S H+IEEGHVGVYFRGGALL  +S PGFH MIP +TT+R
Sbjct: 1   MFDQSIIGICFFICLAIVFNFSLHRIEEGHVGVYFRGGALLPQVSNPGFHMMIPLLTTYR 60

Query: 107 HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 166
            VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVL  +SVY++V+N+TADYD+ LIFNK+
Sbjct: 61  SVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLDANSVYNMVRNFTADYDQTLIFNKI 120

Query: 167 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 226
           HHELNQFCS+H LHEVYIDLFDQIDENLKTALQ++LN++APGL I AVRVTKPKIPETIR
Sbjct: 121 HHELNQFCSVHTLHEVYIDLFDQIDENLKTALQKDLNDLAPGLSIHAVRVTKPKIPETIR 180

Query: 227 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 286
           KNYELMEAEKTKLLIS QHQKVVEKDAET+RK+AVIEAEKEAQ+AKIQY QK+ME+ES Q
Sbjct: 181 KNYELMEAEKTKLLISTQHQKVVEKDAETDRKKAVIEAEKEAQVAKIQYSQKIMEKESLQ 240

Query: 287 RVAKIE 292
           R+A IE
Sbjct: 241 RMASIE 246

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022736|ref|XP_003695194.1| PREDICTED: erlin-1-like [Apis florea]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 192/246 (78%), Positives = 221/246 (89%)

Query: 47  MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 106
           M D  ++GI     L +VFN+S H+IEEGHVGVYFRGGALL  +S PGFH MIP +TT+R
Sbjct: 1   MFDQSIIGICFCVCLAIVFNFSLHRIEEGHVGVYFRGGALLPQVSNPGFHMMIPLLTTYR 60

Query: 107 HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 166
            VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN+L  +SVY++V+N+TADYD+ LIFNK+
Sbjct: 61  AVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNILDANSVYNMVRNFTADYDQTLIFNKI 120

Query: 167 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 226
           HHELNQFCS+H LHEVYIDLFDQIDENLKTALQ++LN++APGL I AVRVTKPKIPET+R
Sbjct: 121 HHELNQFCSVHTLHEVYIDLFDQIDENLKTALQKDLNDLAPGLSIHAVRVTKPKIPETLR 180

Query: 227 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 286
           KNYELMEAEKTKLLISIQHQKVVEKDAET+RK+AVIEAEKEAQ+AKIQ+ QK+ME+ES Q
Sbjct: 181 KNYELMEAEKTKLLISIQHQKVVEKDAETDRKKAVIEAEKEAQVAKIQFNQKIMEKESLQ 240

Query: 287 RVAKIE 292
           R+A IE
Sbjct: 241 RIAAIE 246

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110761744|ref|XP_623822.2| PREDICTED: erlin-1-like [Apis mellifera]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 192/246 (78%), Positives = 221/246 (89%)

Query: 47  MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 106
           M D  ++GI     L +VFN+S H+IEEGHVGVYFRGGALL  +S PGFH MIP +TT+R
Sbjct: 1   MFDQSIIGICFCVCLAIVFNFSLHRIEEGHVGVYFRGGALLPQVSNPGFHMMIPLLTTYR 60

Query: 107 HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 166
            VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN+L  +SVY++V+N+TADYD+ LIFNK+
Sbjct: 61  AVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNILDANSVYNMVRNFTADYDQTLIFNKI 120

Query: 167 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 226
           HHELNQFCS+H LHEVYIDLFDQIDENLKTALQ++LN++APGL I AVRVTKPKIPET+R
Sbjct: 121 HHELNQFCSVHTLHEVYIDLFDQIDENLKTALQKDLNDLAPGLSIHAVRVTKPKIPETLR 180

Query: 227 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 286
           KNYELMEAEKTKLLISIQHQKVVEKDAET+RK+AVIEAEKEAQ+AKIQ+ QK+ME+ES Q
Sbjct: 181 KNYELMEAEKTKLLISIQHQKVVEKDAETDRKKAVIEAEKEAQVAKIQFNQKIMEKESLQ 240

Query: 287 RVAKIE 292
           R+A IE
Sbjct: 241 RIATIE 246

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198436|gb|EFN79378.1| Erlin-1 [Harpegnathos saltator]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/246 (78%), Positives = 220/246 (89%)

Query: 47  MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 106
           M +  ++ I  L    +VFN+S H+IEEGHVGVYFRGGALL  +S PGFH MIP +TT+R
Sbjct: 1   MFNQRIIAICFLVCFAIVFNFSLHRIEEGHVGVYFRGGALLPQVSNPGFHMMIPLLTTYR 60

Query: 107 HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 166
            VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN+L  +SVY++V+N+TADYD+ LIFNKV
Sbjct: 61  SVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNILDANSVYNMVRNFTADYDRTLIFNKV 120

Query: 167 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 226
           HHELNQFCS+H LHEVYIDLFDQIDENLKTALQ++LNE+APGL IQAVRVTKPKIPETIR
Sbjct: 121 HHELNQFCSVHTLHEVYIDLFDQIDENLKTALQKDLNELAPGLNIQAVRVTKPKIPETIR 180

Query: 227 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 286
           KNYELMEAEKTKLLIS QHQKVVEKDAET+RK+AVIEAEKEAQ+AKIQY QK+ME+ES Q
Sbjct: 181 KNYELMEAEKTKLLISTQHQKVVEKDAETDRKKAVIEAEKEAQVAKIQYNQKIMEKESLQ 240

Query: 287 RVAKIE 292
           ++A IE
Sbjct: 241 QMAAIE 246

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172340|gb|EFN63828.1| Erlin-1 [Camponotus floridanus]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/246 (78%), Positives = 220/246 (89%)

Query: 47  MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 106
           M D  ++ +  L    +VFN+S H+IEEGHVGVYFRGGALL  +S PGFH MIP +TT+R
Sbjct: 1   MFDQRIIAVGFLVCFAIVFNFSLHRIEEGHVGVYFRGGALLPQVSHPGFHMMIPLLTTYR 60

Query: 107 HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 166
            VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN+L  +SVY++V+N+TADYD+ LIFNKV
Sbjct: 61  AVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNILDANSVYNMVRNFTADYDRTLIFNKV 120

Query: 167 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 226
           HHELNQFCS+H LHEVYIDLFDQIDENLKTALQR+LNE+APGL IQAVRVTKPKIPETIR
Sbjct: 121 HHELNQFCSVHTLHEVYIDLFDQIDENLKTALQRDLNELAPGLNIQAVRVTKPKIPETIR 180

Query: 227 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 286
           KNYELMEAEKTKLLIS QHQKVVEKDAET+RK+AVIEAEKEAQ+AKIQY QK+ME+ES Q
Sbjct: 181 KNYELMEAEKTKLLISTQHQKVVEKDAETDRKKAVIEAEKEAQVAKIQYNQKIMEKESLQ 240

Query: 287 RVAKIE 292
           ++A IE
Sbjct: 241 QMAAIE 246

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403683|ref|XP_003486875.1| PREDICTED: hypothetical protein LOC100747756 [Bombus impatiens]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 189/230 (82%), Positives = 214/230 (93%)

Query: 63  LVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPC 122
           +VFN+S H+IEEGHVGVYFRGGALL  +S PGFH MIP +TT+R VQVTLQTDEVKNVPC
Sbjct: 517 VVFNFSLHRIEEGHVGVYFRGGALLPQVSNPGFHMMIPLLTTYRSVQVTLQTDEVKNVPC 576

Query: 123 GTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEV 182
           GTSGGVMIYFDRIEVVN+L  SSVY++V+N+TADYD+ LIFNK+HHELNQFCS+H LHEV
Sbjct: 577 GTSGGVMIYFDRIEVVNILDASSVYNMVRNFTADYDQTLIFNKIHHELNQFCSVHTLHEV 636

Query: 183 YIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLIS 242
           YIDLFDQIDENLKTALQ++LN++APGL I AVRVTKPKIPETIRKNYELMEAEKTKLLIS
Sbjct: 637 YIDLFDQIDENLKTALQKDLNDLAPGLSIHAVRVTKPKIPETIRKNYELMEAEKTKLLIS 696

Query: 243 IQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 292
            QHQKVVEKDAET+RK+AVIEAEKEAQ+AKIQY QK+ME+ES+QR+A IE
Sbjct: 697 TQHQKVVEKDAETDRKKAVIEAEKEAQVAKIQYIQKIMEKESQQRIAAIE 746

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088039|ref|XP_974446.1| PREDICTED: similar to SPFH domain family, member 1 [Tribolium castaneum] gi|270012079|gb|EFA08527.1| hypothetical protein TcasGA2_TC006180 [Tribolium castaneum]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/246 (79%), Positives = 219/246 (89%), Gaps = 1/246 (0%)

Query: 47  MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 106
           + + L++G V L +L ++FNYS H+IEEGHVGVYFRGGALL   S PG+H MIP +T ++
Sbjct: 4   LTEHLIIGTV-LSTLFIIFNYSLHRIEEGHVGVYFRGGALLPVTSSPGYHMMIPLLTIYK 62

Query: 107 HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 166
            VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN L+ +SV DIV+NYTADYDK LIFNK+
Sbjct: 63  SVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNHLNANSVMDIVRNYTADYDKTLIFNKI 122

Query: 167 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 226
           HHELNQFCSIH LHEVYIDLFDQIDENLK ALQR+L EMAPGL IQAVRVTKPKIPE IR
Sbjct: 123 HHELNQFCSIHTLHEVYIDLFDQIDENLKQALQRDLLEMAPGLTIQAVRVTKPKIPEVIR 182

Query: 227 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 286
           KNYELME EKTKLLI+ QHQKVVEKDAETERKRAVIEAEKEAQ+AKIQY+QK+ME+ES Q
Sbjct: 183 KNYELMEGEKTKLLIATQHQKVVEKDAETERKRAVIEAEKEAQVAKIQYQQKIMEKESLQ 242

Query: 287 RVAKIE 292
           R+A+IE
Sbjct: 243 RIAQIE 248

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427784217|gb|JAA57560.1| Putative prohibitin-related membrane protease subunit [Rhipicephalus pulchellus]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/246 (76%), Positives = 219/246 (89%)

Query: 47  MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 106
           M +S +  +   F+L L+ N+S HKI+EGHVGVY+RGGALL   S PGFH MIPFITT+R
Sbjct: 1   MPNSGVAALTCAFALFLIVNFSLHKIDEGHVGVYYRGGALLKQTSNPGFHMMIPFITTYR 60

Query: 107 HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 166
            +QVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN+LS  SVYD+VKNYTADYDK LIFNKV
Sbjct: 61  SIQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNILSPDSVYDMVKNYTADYDKTLIFNKV 120

Query: 167 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 226
           HHELNQFCS+HNL EVYI+LFDQIDENLKTALQR+LN MAPGLF+QAVRVTKPKIPETIR
Sbjct: 121 HHELNQFCSVHNLQEVYINLFDQIDENLKTALQRDLNVMAPGLFVQAVRVTKPKIPETIR 180

Query: 227 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 286
           +NYE+MEAEKTKLLI+ Q QKVVEKDAET+RK+A+I+AEK AQ+AKIQY QK++EQES +
Sbjct: 181 RNYEMMEAEKTKLLIAEQRQKVVEKDAETDRKKAIIDAEKVAQVAKIQYTQKILEQESLK 240

Query: 287 RVAKIE 292
           +++ IE
Sbjct: 241 KMSHIE 246

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
UNIPROTKB|G3N0U8	348	ERLIN1 "Uncharacterized protei	0.819	0.689	0.747	1.8e-94
UNIPROTKB|F1NBD0	344	ERLIN2 "Uncharacterized protei	0.839	0.715	0.731	3e-94
MGI|MGI:2387613	346	Erlin1 "ER lipid raft associat	0.819	0.693	0.743	3e-94
RGD|1307058	348	Erlin1 "ER lipid raft associat	0.819	0.689	0.743	3e-94
UNIPROTKB|B8XSJ1	348	ERLIN1 "ER lipid raft-associat	0.819	0.689	0.743	3.8e-94
UNIPROTKB|O75477	346	ERLIN1 "Erlin-1" [Homo sapiens	0.819	0.693	0.739	1.3e-93
UNIPROTKB|Q5RCJ9	346	ERLIN1 "Erlin-1" [Pongo abelii	0.819	0.693	0.739	1.3e-93
UNIPROTKB|E5RHW4	338	ERLIN2 "Erlin-2" [Homo sapiens	0.819	0.710	0.730	2.1e-93
UNIPROTKB|O94905	339	ERLIN2 "Erlin-2" [Homo sapiens	0.819	0.707	0.730	2.1e-93
UNIPROTKB|Q5R7C5	339	ERLIN2 "Erlin-2" [Pongo abelii	0.819	0.707	0.730	2.1e-93

UNIPROTKB|G3N0U8 ERLIN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
 Identities = 181/242 (74%), Positives = 214/242 (88%)

Query:    51 LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV 110
             L+ G+V L  +LL    S HKIEEGH+ VY+RGGALL++ SGPG+H M+PFITTFR VQ 
Sbjct:     9 LVAGVVGLVVVLLYA--SIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQT 66

Query:   111 TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHEL 170
             TLQTDEVKNVPCGTSGGVMIY DRIEVVN+L+  +V+DIVKNYTADYDK LIFNK+HHEL
Sbjct:    67 TLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPCAVFDIVKNYTADYDKTLIFNKIHHEL 126

Query:   171 NQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 230
             NQFCS H L EVYI+LFDQIDENLK ALQ++LN MAPGL IQAVRVTKPKIPE IR+N+E
Sbjct:   127 NQFCSAHTLQEVYIELFDQIDENLKQALQKDLNVMAPGLTIQAVRVTKPKIPEAIRRNFE 186

Query:   231 LMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 290
             LMEAEKTKLLI+ Q QKVVEK+AETERK+AVIEAEK AQ+AKI+++QKVME+E+++R+++
Sbjct:   187 LMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKETEKRISE 246

Query:   291 IE 292
             IE
Sbjct:   247 IE 248

GO:0043234 "protein complex" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|F1NBD0 ERLIN2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 180/246 (73%), Positives = 212/246 (86%)

Query:    47 MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 106
             MA    +  + L  L   F  + HKIEEGH+GVY+RGGALL++ SGPGFH M+PFIT+++
Sbjct:     3 MAQLGAIAALVLSFLAAAFLSAIHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK 62

Query:   107 HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 166
              VQ TLQTDEVKNVPCGTSGGVMIYFDRIEVVN L  S+VYDIVKNYTADYDKALIFNK+
Sbjct:    63 SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIQSAVYDIVKNYTADYDKALIFNKI 122

Query:   167 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 226
             HHELNQFCS+H L EVYI+LFDQIDENLK ALQ++L  MAPGL IQAVRVTKP IPETIR
Sbjct:   123 HHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTTMAPGLIIQAVRVTKPNIPETIR 182

Query:   227 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 286
             +NYELME+EKTKLLI+ Q QKVVEK+AETERK+A+IEAEK AQ+A+I Y QKVME+E+++
Sbjct:   183 RNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKIAQVAEITYGQKVMEKETEK 242

Query:   287 RVAKIE 292
             R+++IE
Sbjct:   243 RISEIE 248

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

MGI|MGI:2387613 Erlin1 "ER lipid raft associated 1" [Mus musculus (taxid:10090)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 180/242 (74%), Positives = 214/242 (88%)

Query:    51 LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV 110
             L+  +V L ++LL    S HKIEEGH+ VY+RGGALL++ SGPG+H M+PFITTFR VQ 
Sbjct:     7 LVAAVVGLVAILLYA--SIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQT 64

Query:   111 TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHEL 170
             TLQTDEVKNVPCGTSGGVMIY DRIEVVN+L+  +V+DIV+NYTADYDK LIFNK+HHEL
Sbjct:    65 TLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHEL 124

Query:   171 NQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 230
             NQFCS H L EVYI+LFDQIDENLK ALQ++LN MAPGL IQAVRVTKPKIPE IR+N+E
Sbjct:   125 NQFCSAHTLQEVYIELFDQIDENLKQALQKDLNTMAPGLTIQAVRVTKPKIPEAIRRNFE 184

Query:   231 LMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 290
             LMEAEKTKLLI+ Q QKVVEK+AETERKRAVIEAEK AQ+AKI+++QKVME+E+++R+++
Sbjct:   185 LMEAEKTKLLIAAQKQKVVEKEAETERKRAVIEAEKIAQVAKIRFQQKVMEKETEKRISE 244

Query:   291 IE 292
             IE
Sbjct:   245 IE 246

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

RGD|1307058 Erlin1 "ER lipid raft associated 1" [Rattus norvegicus (taxid:10116)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 180/242 (74%), Positives = 214/242 (88%)

Query:    51 LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV 110
             L+  +V L ++LL    S HKIEEGH+ VY+RGGALL++ SGPG+H M+PFITTFR VQ 
Sbjct:     9 LVAAVVGLVAILLYA--SIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQT 66

Query:   111 TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHEL 170
             TLQTDEVKNVPCGTSGGVMIY DRIEVVN+L+  +V+DIV+NYTADYDK LIFNK+HHEL
Sbjct:    67 TLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHEL 126

Query:   171 NQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 230
             NQFCS H L EVYI+LFDQIDENLK ALQ++LN MAPGL IQAVRVTKPKIPE IR+N+E
Sbjct:   127 NQFCSAHTLQEVYIELFDQIDENLKQALQKDLNTMAPGLTIQAVRVTKPKIPEAIRRNFE 186

Query:   231 LMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 290
             LMEAEKTKLLI+ Q QKVVEK+AETERKRAVIEAEK AQ+AKI+++QKVME+E+++R+++
Sbjct:   187 LMEAEKTKLLIAAQKQKVVEKEAETERKRAVIEAEKIAQVAKIRFQQKVMEKETEKRISE 246

Query:   291 IE 292
             IE
Sbjct:   247 IE 248

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISO

GO:0030433 "ER-associated protein catabolic process" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=IEA;ISO

UNIPROTKB|B8XSJ1 ERLIN1 "ER lipid raft-associated 1" [Sus scrofa (taxid:9823)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 180/242 (74%), Positives = 214/242 (88%)

Query:    51 LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV 110
             L+ G+V L  +LL    S HKIEEGH+ VY+RGGALL++ SGPG+H M+PFITTFR VQ 
Sbjct:     9 LVAGVVGLVVVLLYA--SIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQT 66

Query:   111 TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHEL 170
             TLQTDEVKNVPCGTSGGVMIY DRIEVVN+L+  +V+DIV+NYTADYDK LIFNK+HHEL
Sbjct:    67 TLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPCAVFDIVRNYTADYDKTLIFNKIHHEL 126

Query:   171 NQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 230
             NQFCS H L EVYI+LFDQIDENLK ALQ++LN MAPGL IQAVRVTKPKIPE IR+N+E
Sbjct:   127 NQFCSAHTLQEVYIELFDQIDENLKQALQKDLNVMAPGLTIQAVRVTKPKIPEAIRRNFE 186

Query:   231 LMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 290
             LMEAEKTKLLI+ Q QKVVEK+AETERK+AVIEAEK AQ+AKI+++QKVME+E+++R+++
Sbjct:   187 LMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKETEKRISE 246

Query:   291 IE 292
             IE
Sbjct:   247 IE 248

GO:0043234 "protein complex" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|O75477 ERLIN1 "Erlin-1" [Homo sapiens (taxid:9606)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 179/242 (73%), Positives = 214/242 (88%)

Query:    51 LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV 110
             L+  +V L ++LL    S HKIEEGH+ VY+RGGALL++ SGPG+H M+PFITTFR VQ 
Sbjct:     7 LVAAVVGLVAVLLYA--SIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQT 64

Query:   111 TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHEL 170
             TLQTDEVKNVPCGTSGGVMIY DRIEVVN+L+  +V+DIV+NYTADYDK LIFNK+HHEL
Sbjct:    65 TLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHEL 124

Query:   171 NQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 230
             NQFCS H L EVYI+LFDQIDENLK ALQ++LN MAPGL IQAVRVTKPKIPE IR+N+E
Sbjct:   125 NQFCSAHTLQEVYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFE 184

Query:   231 LMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 290
             LMEAEKTKLLI+ Q QKVVEK+AETERK+AVIEAEK AQ+AKI+++QKVME+E+++R+++
Sbjct:   185 LMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKETEKRISE 244

Query:   291 IE 292
             IE
Sbjct:   245 IE 246

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030433 "ER-associated protein catabolic process" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q5RCJ9 ERLIN1 "Erlin-1" [Pongo abelii (taxid:9601)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 179/242 (73%), Positives = 214/242 (88%)

Query:    51 LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV 110
             L+  +V L ++LL    S HKIEEGH+ VY+RGGALL++ SGPG+H M+PFITTFR VQ 
Sbjct:     7 LVAAVVGLVAVLLYA--SIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQT 64

Query:   111 TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHEL 170
             TLQTDEVKNVPCGTSGGVMIY DRIEVVN+L+  +V+DIV+NYTADYDK LIFNK+HHEL
Sbjct:    65 TLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHEL 124

Query:   171 NQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 230
             NQFCS H L EVYI+LFDQIDENLK ALQ++LN MAPGL IQAVRVTKPKIPE IR+N+E
Sbjct:   125 NQFCSAHTLQEVYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFE 184

Query:   231 LMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 290
             LMEAEKTKLLI+ Q QKVVEK+AETERK+AVIEAEK AQ+AKI+++QKVME+E+++R+++
Sbjct:   185 LMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKETEKRISE 244

Query:   291 IE 292
             IE
Sbjct:   245 IE 246

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

UNIPROTKB|E5RHW4 ERLIN2 "Erlin-2" [Homo sapiens (taxid:9606)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 176/241 (73%), Positives = 212/241 (87%)

Query:    52 LVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVT 111
             +V + S F    +F+ + HKIEEGH+GVY+RGGALL++ SGPGFH M+PFIT+++ VQ T
Sbjct:     7 VVAVASSFFCASLFS-AVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTT 65

Query:   112 LQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELN 171
             LQTDEVKNVPCGTSGGVMIYFDRIEVVN L  ++VYDIVKNYTADYDKALIFNK+HHELN
Sbjct:    66 LQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELN 125

Query:   172 QFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 231
             QFCS+H L EVYI+LFDQIDENLK ALQ++L  MAPGL IQAVRVTKP IPE IR+NYEL
Sbjct:   126 QFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYEL 185

Query:   232 MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 291
             ME+EKTKLLI+ Q QKVVEK+AETERK+A+IEAEK AQ+A+I Y QKVME+E+++++++I
Sbjct:   186 MESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEI 245

Query:   292 E 292
             E
Sbjct:   246 E 246

GO:0005737 "cytoplasm" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|O94905 ERLIN2 "Erlin-2" [Homo sapiens (taxid:9606)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 176/241 (73%), Positives = 212/241 (87%)

Query:    52 LVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVT 111
             +V + S F    +F+ + HKIEEGH+GVY+RGGALL++ SGPGFH M+PFIT+++ VQ T
Sbjct:     7 VVAVASSFFCASLFS-AVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTT 65

Query:   112 LQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELN 171
             LQTDEVKNVPCGTSGGVMIYFDRIEVVN L  ++VYDIVKNYTADYDKALIFNK+HHELN
Sbjct:    66 LQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELN 125

Query:   172 QFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 231
             QFCS+H L EVYI+LFDQIDENLK ALQ++L  MAPGL IQAVRVTKP IPE IR+NYEL
Sbjct:   126 QFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYEL 185

Query:   232 MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 291
             ME+EKTKLLI+ Q QKVVEK+AETERK+A+IEAEK AQ+A+I Y QKVME+E+++++++I
Sbjct:   186 MESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEI 245

Query:   292 E 292
             E
Sbjct:   246 E 246

GO:0008219 "cell death" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q5R7C5 ERLIN2 "Erlin-2" [Pongo abelii (taxid:9601)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 176/241 (73%), Positives = 212/241 (87%)

Query:    52 LVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVT 111
             +V + S F    +F+ + HKIEEGH+GVY+RGGALL++ SGPGFH M+PFIT+++ VQ T
Sbjct:     7 VVAVASSFFCASLFS-AVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTT 65

Query:   112 LQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELN 171
             LQTDEVKNVPCGTSGGVMIYFDRIEVVN L  ++VYDIVKNYTADYDKALIFNK+HHELN
Sbjct:    66 LQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELN 125

Query:   172 QFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 231
             QFCS+H L EVYI+LFDQIDENLK ALQ++L  MAPGL IQAVRVTKP IPE IR+NYEL
Sbjct:   126 QFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYEL 185

Query:   232 MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 291
             ME+EKTKLLI+ Q QKVVEK+AETERK+A+IEAEK AQ+A+I Y QKVME+E+++++++I
Sbjct:   186 MESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEI 245

Query:   292 E 292
             E
Sbjct:   246 E 246

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1RMU4	ERLN2_BOVIN	No assigned EC number	0.7261	0.8191	0.7100	no	N/A
Q6DKC0	ERL2B_XENLA	No assigned EC number	0.7822	0.7679	0.6818	N/A	N/A
Q28DX1	ERLN1_XENTR	No assigned EC number	0.7314	0.8225	0.7554	no	N/A
Q5XH03	ERL2A_XENLA	No assigned EC number	0.7777	0.7679	0.6716	N/A	N/A
Q5RCJ9	ERLN1_PONAB	No assigned EC number	0.7733	0.7679	0.6502	no	N/A
Q91X78	ERLN1_MOUSE	No assigned EC number	0.7438	0.8191	0.6936	yes	N/A
Q5R7C5	ERLN2_PONAB	No assigned EC number	0.7302	0.8191	0.7079	yes	N/A
O94905	ERLN2_HUMAN	No assigned EC number	0.7302	0.8191	0.7079	yes	N/A
A3QK16	ERLN2_DANRE	No assigned EC number	0.7231	0.8020	0.7099	no	N/A
B5DEH2	ERLN2_RAT	No assigned EC number	0.7302	0.8191	0.7079	no	N/A
Q28J34	ERLN2_XENTR	No assigned EC number	0.7777	0.7679	0.6716	yes	N/A
Q58EG2	ERLN1_DANRE	No assigned EC number	0.7004	0.8361	0.7163	yes	N/A
O75477	ERLN1_HUMAN	No assigned EC number	0.7733	0.7679	0.6502	no	N/A
Q8BFZ9	ERLN2_MOUSE	No assigned EC number	0.7302	0.8191	0.7058	no	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	293
cd03406	280	cd03406, Band_7_3, A subgroup of the band 7 domain	1e-152
smart00244	160	smart00244, PHB, prohibitin homologues	2e-25
pfam01145	177	pfam01145, Band_7, SPFH domain / Band 7 family	3e-16
cd02106	121	cd02106, Band_7, The band 7 domain of flotillin (r	2e-07
COG0330	291	COG0330, HflC, Membrane protease subunits, stomati	4e-07
cd03405	242	cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma	3e-06
TIGR01932	317	TIGR01932, hflC, HflC protein	3e-05
cd03403	215	cd03403, Band_7_stomatin_like, Band_7_stomatin_lik	6e-05
PRK11029	334	PRK11029, PRK11029, FtsH protease regulator HflC;	0.003

>gnl|CDD|239500 cd03406, Band_7_3, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score =  425 bits (1094), Expect = e-152
 Identities = 181/228 (79%), Positives = 206/228 (90%)

Query: 65  FNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGT 124
            + + HKIEEGHVGVY+RGGALL++ SGPGFH M+PFITT++ VQVTLQTDEVKNVPCGT
Sbjct: 1   LSSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGT 60

Query: 125 SGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYI 184
           SGGVMIYFDRIEVVN L   SVYDIVKNYTADYDK LIFNK+HHELNQFCS+H L EVYI
Sbjct: 61  SGGVMIYFDRIEVVNFLIPDSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYI 120

Query: 185 DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQ 244
           DLFDQIDENLK ALQ++L  MAPGL IQAVRVTKPKIPE IR+NYELMEAEKTKLLI+IQ
Sbjct: 121 DLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNYELMEAEKTKLLIAIQ 180

Query: 245 HQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 292
            QKVVEK+AETERK+AVIEAEK AQ+AKI + QKVME+E+++R+++IE
Sbjct: 181 KQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIE 228

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 280

>gnl|CDD|214581 smart00244, PHB, prohibitin homologues

 Score = 98.5 bits (246), Expect = 2e-25
 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 7/166 (4%)

Query: 68  SFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGG 127
           +   + EG  GV  R G +L  + GPG H +IPFI   + V +  QTD+V      T   
Sbjct: 2   AIKVVGEGERGVVERLGRVL-RVLGPGLHFLIPFIDDVKKVDLRAQTDDVPPQETITKDN 60

Query: 128 VMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLF 187
           V +  D   VV    +  +  + +   ADY  A+I       L        L E+  D  
Sbjct: 61  VKVSVDA--VVYYRVLDPLRAVYRVLDADY--AVIEQLAQTTLRSVIGKRTLDELLTDQR 116

Query: 188 DQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELME 233
           ++I EN++  L       A G+ ++ V +   ++PE I++  E  +
Sbjct: 117 EKISENIREELNEAAE--AWGIKVEDVEIKDIRLPEEIKEAMEAQQ 160

prohibitin homologues. Length = 160

>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family

 Score = 74.3 bits (183), Expect = 3e-16
 Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 18/193 (9%)

Query: 70  HKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKN-VPCGTSGGV 128
             +  G VGV  R G + S + GPG H  +PFI T   V   LQT EV   +   T  GV
Sbjct: 1   TIVPPGEVGVVTRFGKV-SRVLGPGLHFKLPFIQTITVVDTRLQTLEVTVDITVLTKDGV 59

Query: 129 MIYFDRIEVVNVLSVSSVYDIVKNYT-ADYDKALIFNKVHHELNQFCSIHNLHEVYIDLF 187
            +    ++V     V     +V NYT  +  + L+   V   L +  + + L E+  +  
Sbjct: 60  PV---NVDVTVQYRVEDPAKLVANYTGEEDLQELLRPLVRSALREVIARYTLDELLSNR- 115

Query: 188 DQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQK 247
           ++I + +K ALQ EL +   GL I+ V++T    P  I +  E  +A           Q+
Sbjct: 116 EEIAQEVKEALQEELEKY--GLEIEDVQITDIDPPPEIAEAIEEKQA---------AEQE 164

Query: 248 VVEKDAETERKRA 260
             E + E     A
Sbjct: 165 AEEAEIERAEAEA 177

This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals. Length = 177

>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 111 TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHEL 170
             QT +V      T   V +   R++ V    V      + N     D+  +       L
Sbjct: 5   RRQTLDVPPQEVLTKDNVPV---RVDAVVQYRVVDPVKALYNVRDPEDEEALRQLAQSAL 61

Query: 171 NQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 230
                   L E+  D  D+I   ++ ALQ +L++   G+ +  VR+     PE +++  E
Sbjct: 62  RSVIGKMTLDELLED-RDEIAAEVREALQEDLDKY--GIEVVDVRIKDIDPPEEVQEAME 118

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 121

>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 55/251 (21%), Positives = 94/251 (37%), Gaps = 26/251 (10%)

Query: 51  LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV 110
           L++ I+ L  L+++   S   ++EG  GV  R G    T+  PG H  IPF      V V
Sbjct: 3   LILIIILLVILIVLLFSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVV 62

Query: 111 TLQTDEV-----KNVPCGTSGGVMIYFDRIEVVNVLSVSS--VYDIVKNYTA-DYDKALI 162
            +   E            T   V+        V+V +V    V D  K     +  +A +
Sbjct: 63  RVDLRERTLDVGPPQEVITKDNVI--------VSVDAVVQYRVTDPQKAVYNVENAEAAL 114

Query: 163 FNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIP 222
              V   L        L E+  +   +I+  ++  L    +    G+ +  V +     P
Sbjct: 115 RQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPW--GIKVVDVEIKDIDPP 172

Query: 223 ETIRKNYEL-MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQ-YEQKVM 280
           E ++   E  M AE+ K        +++E + E +      E E EA I   +   +  +
Sbjct: 173 EEVQAAMEKQMAAERDKR------AEILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEV 226

Query: 281 EQESKQRVAKI 291
              ++   AKI
Sbjct: 227 IARAEADAAKI 237

Length = 291

>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 47/219 (21%), Positives = 89/219 (40%), Gaps = 33/219 (15%)

Query: 72  IEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIY 131
           ++EG   V  R G ++  ++ PG H  +PFI   +     + T +       T     + 
Sbjct: 4   VDEGEQAVVLRFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLI 63

Query: 132 FD-----RIEVVNVLSVSSVYDIVKNYTA-----DYDKALIFNKVHHELNQFCSIHNLHE 181
            D     RI            D ++ Y A        +  +   V+  L        L E
Sbjct: 64  VDAYAKWRIT-----------DPLRFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIE 112

Query: 182 VYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKN-YELMEAEKTKLL 240
           +      ++ E ++ A+  E  E+  G+ +  VR+ +  +PE + ++ Y  M AE+ +  
Sbjct: 113 LVSGERGELMEEIRRAVAEEAKEL--GIEVVDVRIKRIDLPEEVSESVYRRMRAERER-- 168

Query: 241 ISIQH-----QKVVEKDAETERKRAVI--EAEKEAQIAK 272
           I+ +      ++     A+ +R+R VI  EA +EAQ  +
Sbjct: 169 IAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIR 207

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Length = 242

>gnl|CDD|233644 TIGR01932, hflC, HflC protein

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 56/275 (20%), Positives = 97/275 (35%), Gaps = 42/275 (15%)

Query: 53  VGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLST------ISGPGFHAMIPFITTFR 106
           +GIV +  L++V    F  I+EG  G+  R G +L        +  PG H  IPFI   +
Sbjct: 4   IGIVVIVLLIVVLFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVK 63

Query: 107 HVQVTLQT--DEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFN 164
                +QT       +P  T     I  D      +      Y      T    + LI  
Sbjct: 64  IFDAKIQTMDGRPDRIP--TKEKKDIIIDTYIRWRIEDFKKYYLSTGGGTISAAEVLIKR 121

Query: 165 KVHHELNQFCSIHNLHEVYIDLFDQID---------------------ENLKTALQRELN 203
           K+   L     +  L E+     DQ+D                        +  L RE++
Sbjct: 122 KIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGREILAREIS 181

Query: 204 EMAP------GLFIQAVRVTKPKIPETIRKN-YELMEAEKTKLLISIQHQKVVEKDAETE 256
           ++A       G+ +  VR+ K    + + ++ Y  M +E+      I      + + + E
Sbjct: 182 QIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSERE----QIARMHRSQGEEKAE 237

Query: 257 RKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 291
                 E E    +++     ++++ E     AKI
Sbjct: 238 EILGKAEYEVRKILSEAYRTARIIKGEGDAEAAKI 272

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described [Protein fate, Degradation of proteins, peptides, and glycopeptides, Regulatory functions, Protein interactions]. Length = 317

>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 52/233 (22%), Positives = 88/233 (37%), Gaps = 41/233 (17%)

Query: 72  IEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVT-LQTDEVKNVPCGTSGGVMI 130
           + +   GV  R G    T+ GPG H +IPFI    +      Q  +V      T   V +
Sbjct: 1   VPQYERGVVERLGKYHRTL-GPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTV 59

Query: 131 YFDRI---EVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYI--- 184
             D +    VV+   V +VY +      DY  A+       +L Q      L  V     
Sbjct: 60  RVDAVLYYRVVDP--VKAVYGV-----EDYRYAIS------QLAQT----TLRSVIGKME 102

Query: 185 --DLF---DQIDENLKTALQRELNEMAP-GLFIQAVRVTKPKIPETIRKNYEL-MEAEKT 237
             +L    ++I+  L   L        P G+ ++ V +    +P+ I++      EAE+ 
Sbjct: 103 LDELLSEREEINAELVEILDE---ATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAERE 159

Query: 238 KLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 290
           K        K++E + E +    + EA K+A I     + + +E   +     
Sbjct: 160 KR------AKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEIAKEA 206

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin localizes to the plasma membrane of podocyte foot processes and, is found in higher order oligomers. Podocin plays a role in regulating glomerular permeability. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. This group also contains proteins similar to three Caenorhabditis elegans proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the unc-1 and unc-24 genes result in abnormal motion and altered patterns of sensitivity to volatile anesthetics. MEC-2 and UNC-24 proteins interact with MEC-4 which is part of the degenerin channel complex required for response to gentle body touch. Length = 215

>gnl|CDD|182913 PRK11029, PRK11029, FtsH protease regulator HflC; Provisional

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 55  IVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALL------STISGPGFHAMIPFITTFRHV 108
           I  +  +L+V   S   ++EG  G+  R G +L        +  PG H  IPFI T + +
Sbjct: 6   IAIIIIVLVVLYMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKML 65

Query: 109 QVTLQT 114
              +QT
Sbjct: 66  DARIQT 71

Length = 334

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
cd03406	280	Band_7_3 A subgroup of the band 7 domain of flotil	100.0
PRK11029	334	FtsH protease regulator HflC; Provisional	100.0
PRK10930	419	FtsH protease regulator HflK; Provisional	100.0
KOG2962|consensus	322		100.0
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	100.0
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	100.0
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	100.0
cd03401	196	Band_7_prohibitin Band_7_prohibitin. A subgroup of	100.0
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	100.0
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	100.0
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	100.0
cd03402	219	Band_7_2 A subgroup of the band 7 domain of flotil	100.0
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	100.0
smart00244	160	PHB prohibitin homologues. prohibitin homologues	99.96
KOG2620|consensus	301		99.96
KOG3090|consensus	290		99.96
KOG2621|consensus	288		99.96
PF01145	179	Band_7: SPFH domain / Band 7 family; InterPro: IPR	99.95
KOG3083|consensus	271		99.91
cd03408	207	Band_7_5 A subgroup of the band 7 domain of flotil	99.82
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	99.78
cd03400	124	Band_7_1 A subgroup of the band 7 domain of flotil	99.77
cd03399	128	Band_7_flotillin Band_7_flotillin: a subgroup of t	99.7
KOG2668|consensus	428		99.69
cd02106	121	Band_7 The band 7 domain of flotillin (reggie) lik	99.47
PF13421	211	Band_7_1: SPFH domain-Band 7 family	99.26
COG4260	345	Membrane protease subunit, stomatin/prohibitin fam	98.66
PTZ00491	850	major vault protein; Provisional	97.99
PF12127	316	YdfA_immunity: SigmaW regulon antibacterial; Inter	95.62
PRK13665	316	hypothetical protein; Provisional	95.57
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	94.78
PRK11029	334	FtsH protease regulator HflC; Provisional	94.5
PRK12785	166	fliL flagellar basal body-associated protein FliL;	93.27
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	92.95
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	92.66
PRK07718	142	fliL flagellar basal body-associated protein FliL;	92.49
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	92.42
COG1580	159	FliL Flagellar basal body-associated protein [Cell	92.08
PRK07021	162	fliL flagellar basal body-associated protein FliL;	91.64
PF03748	99	FliL: Flagellar basal body-associated protein FliL	89.81
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	88.68
PRK10930	419	FtsH protease regulator HflK; Provisional	87.43
PTZ00491	850	major vault protein; Provisional	85.83
COG4864	328	Uncharacterized protein conserved in bacteria [Fun	82.76

>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=1.6e-46  Score=337.41  Aligned_cols=229  Identities=79%  Similarity=1.197  Sum_probs=216.9

Q ss_pred             HhhceEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechh
Q psy9118          65 FNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVS  144 (293)
Q Consensus        65 l~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~  144 (293)
                      +++|+++|++|++||+++||++.+.+++|||||++||+++|..+++++++.+.++..+.|+||.++.+|.+.++|++||+
T Consensus         1 ~~ssv~iV~ege~gVV~RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~   80 (280)
T cd03406           1 LSSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPD   80 (280)
T ss_pred             CCceEEEECCCeEEEEEECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCHH
Confidence            46799999999999999999997678999999999999999999999999988778899999999999987789999999


Q ss_pred             cHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChH
Q psy9118         145 SVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPET  224 (293)
Q Consensus       145 ~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~  224 (293)
                      ++++.+.+|+.++...+|.+.+++++|+++|+++++++++++|+++...+++.+++.++++.+||+|.+|.|++++||++
T Consensus        81 ~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~  160 (280)
T cd03406          81 SVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEA  160 (280)
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHH
Confidence            99999988887777889999999999999999999999987999999999999999999544599999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHhhhcC
Q psy9118         225 IRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEG  293 (293)
Q Consensus       225 v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~~~~e~~~~~~~~~~~~  293 (293)
                      +.++|++|.+||++.++|.|.+...+.+||++|.+.+++|+|+|+.++|+.+|+++|||+++.+|.||+
T Consensus       161 V~~aferM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (280)
T cd03406         161 IRRNYELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIED  229 (280)
T ss_pred             HHHHHHHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999985

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=100.00  E-value=2.7e-39  Score=297.41  Aligned_cols=219  Identities=22%  Similarity=0.326  Sum_probs=181.8

Q ss_pred             HHHHHHHHHhhceEEecCCeEEEEEeCCccccc------cccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeE
Q psy9118          57 SLFSLLLVFNYSFHKIEEGHVGVYFRGGALLST------ISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMI  130 (293)
Q Consensus        57 ~lv~~l~~l~~~~~~V~~ge~gVv~~~Gk~~~~------v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v  130 (293)
                      +++++++|+++|+++|++|++||+++||++.+.      +++|||||++||+++|..+|+|.++++.+.+.++|+|++.|
T Consensus         8 ~~~~~~~~l~~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V   87 (334)
T PRK11029          8 IIIIVLVVLYMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDL   87 (334)
T ss_pred             HHHHHHHHHHheEEEECCCeEEEEEECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEE
Confidence            445567788899999999999999999999853      58999999999999999999999999998888999999999


Q ss_pred             EEEEEEEEEEechhcHHHHHHhhcccc--cchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhh-----
Q psy9118         131 YFDRIEVVNVLSVSSVYDIVKNYTADY--DKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELN-----  203 (293)
Q Consensus       131 ~vd~~~v~~~~d~~~i~~~~~~~~~~~--~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~-----  203 (293)
                      .+|.++.|++.||.+++..+.  +.++  ....|++.++++||+++|+++++++++++|+++..++++.+++.+.     
T Consensus        88 ~VD~~V~yrI~Dp~~~~~~~~--~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~  165 (334)
T PRK11029         88 IVDSYIKWRISDFSRYYLATG--GGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDE  165 (334)
T ss_pred             EEEEEEEEEECCHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhccccc
Confidence            999998888889887764321  2222  3578999999999999999999999977899999999999996531     


Q ss_pred             -----------------------------c---CCCCeEEEEEEecCCCCChHHHHH-HHHHHHHHHHHHHHHHHHH---
Q psy9118         204 -----------------------------E---MAPGLFIQAVRVTKPKIPETIRKN-YELMEAEKTKLLISIQHQK---  247 (293)
Q Consensus       204 -----------------------------~---~~~GI~I~~v~I~~i~~p~~v~~a-~~~~~ae~~~~~~A~q~~~---  247 (293)
                                                   .   .+|||+|.+|.|++++||+++.++ +++|.|||++.  |+..++   
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~--a~~~~aege  243 (334)
T PRK11029        166 VATPAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAV--ARRHRSQGQ  243 (334)
T ss_pred             ccccccccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence                                         0   279999999999999999999999 56888988865  211111   


Q ss_pred             -------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9118         248 -------------VVEKDAETERKRAVIEAEKEAQIAKIQYEQKV  279 (293)
Q Consensus       248 -------------~~e~~AeA~~~~~ii~A~geaea~~i~~~~~~  279 (293)
                                   ..+.+|+|++++.+++|+|+|+++++.+++-.
T Consensus       244 ~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~  288 (334)
T PRK11029        244 EEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFS  288 (334)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence                         12225888888889999999999998876544

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=100.00  E-value=1.9e-38  Score=299.21  Aligned_cols=225  Identities=14%  Similarity=0.164  Sum_probs=185.2

Q ss_pred             HHHHHHHHHHhhceEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEE
Q psy9118          56 VSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRI  135 (293)
Q Consensus        56 ~~lv~~l~~l~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~  135 (293)
                      ++++++++|+++|||+|+|+|+|||++||++. .+++|||||++||+++|..+|++.+........++|+|++.|.+|.+
T Consensus        84 i~~~~v~i~l~sg~yiV~e~E~gVV~rFGk~~-~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~  162 (419)
T PRK10930         84 AAAAVVIIWAASGFYTIKEAERGVVTRFGKFS-HLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMN  162 (419)
T ss_pred             HHHHHHHHHHHheEEEECCCeEEEEEECCcCc-ceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEEE
Confidence            44556677899999999999999999999997 79999999999999999999998776555567899999999999999


Q ss_pred             EEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEE
Q psy9118         136 EVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVR  215 (293)
Q Consensus       136 ~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~  215 (293)
                      +.|++.||.++.     |...+.+..|+++++++||+++|+++++++++++|++|..++.+.+++.++.+.+||+|++|.
T Consensus       163 VqYrI~Dp~~~l-----f~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~  237 (419)
T PRK10930        163 VQYRVTDPEKYL-----FSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVN  237 (419)
T ss_pred             EEEEECCHHHHH-----HhccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence            888888887753     333344678999999999999999999999987899999999999999999666799999999


Q ss_pred             ecCCCCChHHHHHHHHHHHHHHHHH----HHHHHHH-----------HHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHH
Q psy9118         216 VTKPKIPETIRKNYELMEAEKTKLL----ISIQHQK-----------VVEKDAETERKRAVIEAEKEAQI-AKIQYEQKV  279 (293)
Q Consensus       216 I~~i~~p~~v~~a~~~~~ae~~~~~----~A~q~~~-----------~~e~~AeA~~~~~ii~A~geaea-~~i~~~~~~  279 (293)
                      |++++||+++.+||++|.++++...    .|+.++.           ....+|||++++.+++|+|+|++ ++|..+.+.
T Consensus       238 I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~k  317 (419)
T PRK10930        238 FQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKA  317 (419)
T ss_pred             EeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence            9999999999999999988776541    1222221           11236788888888888888865 677776665


Q ss_pred             HhHHHHH
Q psy9118         280 MEQESKQ  286 (293)
Q Consensus       280 ~e~~~~~  286 (293)
                      .-.-+..
T Consensus       318 aP~vtr~  324 (419)
T PRK10930        318 APEITRE  324 (419)
T ss_pred             CHHHHHH
Confidence            5555443

>KOG2962|consensus

Probab=100.00  E-value=9.4e-39  Score=270.31  Aligned_cols=241  Identities=73%  Similarity=1.122  Sum_probs=227.9

Q ss_pred             HHHHHHHHHHHHHhhceEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEE
Q psy9118          53 VGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYF  132 (293)
Q Consensus        53 ~~~~~lv~~l~~l~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~v  132 (293)
                      .++.++.+++.+++++++.|++|++||++|.|.....+.+||+|+++||+.++..+.++.|+-++.+.+|.|+.|+.+.+
T Consensus         7 ~v~~~~a~~~~~~~s~vHkieEGHvgvYyRGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyf   86 (322)
T KOG2962|consen    7 LVAAAIALLVAFLSSAVHKIEEGHVGVYYRGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYF   86 (322)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCceEEEEecceeeeccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEE
Confidence            33344455666788899999999999999999988778999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEE
Q psy9118         133 DRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQ  212 (293)
Q Consensus       133 d~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~  212 (293)
                      |-+-++++..|+.+++++++|+.+|+..+|.+-+...+...|+.+|+.++|-.-.++|.++++++|+++|.+|..|++|.
T Consensus        87 drIEVVN~L~~d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iq  166 (322)
T KOG2962|consen   87 DRIEVVNFLRPDAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQ  166 (322)
T ss_pred             ehhhhhhhhchhHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEE
Confidence            98888888889999999999999999999999999999999999999999977889999999999999999999999999


Q ss_pred             EEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHhhhc
Q psy9118         213 AVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE  292 (293)
Q Consensus       213 ~v~I~~i~~p~~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~~~~e~~~~~~~~~~~  292 (293)
                      .|+++....|+.++..|+.|++|+.+.++|.+.+..+|++||.+|+.++++|+..|+.++|..+|++.|||+++.+|.||
T Consensus       167 aVRVTKPkIPEaiRrN~E~ME~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa~I~~qqkl~EKetekr~~eiE  246 (322)
T KOG2962|consen  167 AVRVTKPKIPEAIRRNFELMEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAKILMQQKLMEKETEKRISEIE  246 (322)
T ss_pred             EEEecCCCChHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q psy9118         293 G  293 (293)
Q Consensus       293 ~  293 (293)
                      +
T Consensus       247 ~  247 (322)
T KOG2962|consen  247 D  247 (322)
T ss_pred             H
Confidence            5

>TIGR01932 hflC HflC protein

Probab=100.00  E-value=9.4e-38  Score=287.36  Aligned_cols=214  Identities=22%  Similarity=0.303  Sum_probs=172.4

Q ss_pred             HHHHHHHHHhhceEEecCCeEEEEEeCCcccccc------ccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeE
Q psy9118          57 SLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTI------SGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMI  130 (293)
Q Consensus        57 ~lv~~l~~l~~~~~~V~~ge~gVv~~~Gk~~~~v------~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v  130 (293)
                      +++++++|+++||++|+||++||+++||++.+..      ++|||||++||++++..+|+++++++.+...++|+|++++
T Consensus         8 ~~~~~~~~l~~~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~~V   87 (317)
T TIGR01932         8 VIVLLIVVLFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKKDI   87 (317)
T ss_pred             HHHHHHHHHHheEEEECCCeEEEEEecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCCEE
Confidence            3445677888999999999999999999997432      4899999999999999999999999988889999999999


Q ss_pred             EEEEEEEEEEechhcHHHHHHhhcc---cccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHH-----------------
Q psy9118         131 YFDRIEVVNVLSVSSVYDIVKNYTA---DYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQI-----------------  190 (293)
Q Consensus       131 ~vd~~~v~~~~d~~~i~~~~~~~~~---~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i-----------------  190 (293)
                      .+|.++.|++.|+.+++   ..++.   .+.+..|++.+++++|+++|+|+++++++++|+++                 
T Consensus        88 ~Vd~~V~yrV~d~~~~~---~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~  164 (317)
T TIGR01932        88 IIDTYIRWRIEDFKKYY---LSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINK  164 (317)
T ss_pred             EEEEEEEEEECCHHHHH---HHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccc
Confidence            99999888777765443   23331   23467899999999999999999999997667666                 


Q ss_pred             ------------HHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHH-HHHHHHHHHHHHHHHHH-----------
Q psy9118         191 ------------DENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNY-ELMEAEKTKLLISIQHQ-----------  246 (293)
Q Consensus       191 ------------~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~-~~~~ae~~~~~~A~q~~-----------  246 (293)
                                  ...+.+.+.+.+.  +|||+|++|.|++++||+++.+++ ++|.+||++.  |.+.+           
T Consensus       165 ~~~~~~~~r~~l~~~i~~~~~~~~~--~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~--a~~~r~ege~~a~~i~  240 (317)
T TIGR01932       165 IAMTITKGREILAREISQIANSQLK--DIGIEVVDVRIKKINYSDELSESIYNRMRSEREQI--ARMHRSQGEEKAEEIL  240 (317)
T ss_pred             cccccchhhhhHHHHHHHHHHHHHh--cCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence                        4567777788888  899999999999999999999994 6788887653  22221           


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9118         247 -----KVVEKDAETERKRAVIEAEKEAQIAKIQYEQ  277 (293)
Q Consensus       247 -----~~~e~~AeA~~~~~ii~A~geaea~~i~~~~  277 (293)
                           +.....|+|++++.+++|+|+|+++++.+++
T Consensus       241 a~A~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a  276 (317)
T TIGR01932       241 GKAEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDA  276 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                 1122356777778888888888888887664

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=2.5e-36  Score=268.36  Aligned_cols=202  Identities=19%  Similarity=0.275  Sum_probs=166.0

Q ss_pred             eEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHH
Q psy9118          69 FHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYD  148 (293)
Q Consensus        69 ~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~  148 (293)
                      ||+|+||++||+++||++.+.+++||+||++||+++++.+|+++++++.++..++|+|++++.++.++.|++.||.+++.
T Consensus         1 ~~iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~   80 (242)
T cd03405           1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDPLRFYQ   80 (242)
T ss_pred             CEEeCCCeEEEEEEcCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCHHHHHH
Confidence            68999999999999999985579999999999999999999999999888889999999999999998777878765443


Q ss_pred             HHHhhcccc--cchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHH
Q psy9118         149 IVKNYTADY--DKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR  226 (293)
Q Consensus       149 ~~~~~~~~~--~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~  226 (293)
                         .++...  .+..|.+.+++++|+++|+++++++++++|++|++.+.+.+++.++  +|||+|++|.|.+|+||+++.
T Consensus        81 ---~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~--~~Gi~i~~v~i~~i~~p~~i~  155 (242)
T cd03405          81 ---AVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAK--ELGIEVVDVRIKRIDLPEEVS  155 (242)
T ss_pred             ---HhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHH--ccCcEEEEEEEEeccCCHHHH
Confidence               333221  1478999999999999999999999965599999999999999999  889999999999999999999


Q ss_pred             HHH-HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9118         227 KNY-ELMEAEKTKLLISIQHQ----------------KVVEKDAETERKRAVIEAEKEAQIAKIQYEQ  277 (293)
Q Consensus       227 ~a~-~~~~ae~~~~~~A~q~~----------------~~~e~~AeA~~~~~ii~A~geaea~~i~~~~  277 (293)
                      +++ +++.++|++.  |++.+                .....+|+|++++.+++|+|+|+++++.+++
T Consensus       156 ~ai~~~~~ae~~~~--a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a  221 (242)
T cd03405         156 ESVYRRMRAERERI--AAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEA  221 (242)
T ss_pred             HHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            996 5677777754  22111                1122366666666777777777777766643

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=5.2e-36  Score=269.94  Aligned_cols=216  Identities=15%  Similarity=0.182  Sum_probs=161.6

Q ss_pred             HHHHHHHHHhhceEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEE-EeEEEEE------------ecCCcccc
Q psy9118          57 SLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHV-QVTLQTD------------EVKNVPCG  123 (293)
Q Consensus        57 ~lv~~l~~l~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v-~~r~q~~------------~~~~~~v~  123 (293)
                      +++++++|+++||++|+||++|||++||++. .+++||+||++||++++..+ +++.++.            ..+...+.
T Consensus         3 ~~~~~~~~~~~s~~~V~~ge~gVV~~fGk~~-~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (266)
T cd03404           3 AALLVILWLLSGFYIVQPGERGVVLRFGKYS-RTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLML   81 (266)
T ss_pred             HHHHHHHHHHcEEEEECCCceEEeEEcCccc-cccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceE
Confidence            3456667888999999999999999999998 79999999999999887544 3432211            11235689


Q ss_pred             cCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhh
Q psy9118         124 TSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELN  203 (293)
Q Consensus       124 T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~  203 (293)
                      |+||+.+.+|.++.|++.||.++.     |+..+.+..|.+.+++++|+++|+++++++++++|+++++.|.+.+++.++
T Consensus        82 T~D~~~v~vd~~v~yrI~d~~~~~-----~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~  156 (266)
T cd03404          82 TGDENIVDVEFAVQYRISDPYDYL-----FNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILD  156 (266)
T ss_pred             eCCCCEEEEEEEEEEEECCHHHHH-----hhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence            999999999999888888887542     233334678999999999999999999999965699999999999999999


Q ss_pred             cCCCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9118         204 EMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISI----QHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQK  278 (293)
Q Consensus       204 ~~~~GI~I~~v~I~~i~~p~~v~~a~~~~~ae~~~~~~A~----q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~~  278 (293)
                      .+.+||+|++|.|++++||+++.++++++.++++....+.    ..+.....+|++++++.+++|+|++++..+.++.+
T Consensus       157 ~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~  235 (266)
T cd03404         157 AYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGE  235 (266)
T ss_pred             ccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHH
Confidence            4445999999999999999999999998877665432111    11111223444444444455555555544444433

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03401 Band_7_prohibitin Band_7_prohibitin

Probab=100.00  E-value=2.7e-36  Score=259.81  Aligned_cols=195  Identities=22%  Similarity=0.307  Sum_probs=168.6

Q ss_pred             ceEEecCCeEEEEEeCCcccc-ccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcH
Q psy9118          68 SFHKIEEGHVGVYFRGGALLS-TISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSV  146 (293)
Q Consensus        68 ~~~~V~~ge~gVv~~~Gk~~~-~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i  146 (293)
                      ||++|++|++||+++||+.+. .+++||+||++||++++..+|++.++++++ ..+.|+|++.|.++.. +.|.+++..+
T Consensus         1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~-~~~~t~d~~~V~v~~~-v~y~v~~~~~   78 (196)
T cd03401           1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIE-STTGSKDLQMVNITLR-VLFRPDASQL   78 (196)
T ss_pred             CEEEECCCcEEEEEEecCccccCccCCceEEEccccceeEEEEeeeeEEEEe-ecccCCCCeEEEEEEE-EEEEeCHHHH
Confidence            689999999999999998764 389999999999999999999999988875 4678999999999866 4555678888


Q ss_pred             HHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHH
Q psy9118         147 YDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR  226 (293)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~  226 (293)
                      ...+.+|+.++.+..|.+.+++++|+++|+|+++|++ ++|++|++.|.+.+++.+.  +|||+|++|.|++++||+++.
T Consensus        79 ~~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~-~~R~~i~~~i~~~l~~~l~--~~Gi~i~~v~i~~i~~p~~~~  155 (196)
T cd03401          79 PRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELI-TQREEVSALIREALTERAK--DFGIILDDVSITHLTFSKEFT  155 (196)
T ss_pred             HHHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHH-hhHHHHHHHHHHHHHHHHH--hCCeEEEEEEEEeccCCHHHH
Confidence            8888888866667789999999999999999999999 6999999999999999999  899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy9118         227 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIA  271 (293)
Q Consensus       227 ~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~  271 (293)
                      +++++++.+++..++|+    ....+|++++++.+++|+|+|+|+
T Consensus       156 ~ai~~k~~a~q~~~~a~----~~~~~a~~ea~~~~~~A~gea~a~  196 (196)
T cd03401         156 KAVEAKQVAQQEAERAK----FVVEKAEQEKQAAVIRAEGEAEAA  196 (196)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhcC
Confidence            99987766555442222    233578888888899999999874

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.

>TIGR01933 hflK HflK protein

Probab=100.00  E-value=5.2e-35  Score=262.81  Aligned_cols=202  Identities=14%  Similarity=0.162  Sum_probs=161.4

Q ss_pred             eEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHH
Q psy9118          69 FHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYD  148 (293)
Q Consensus        69 ~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~  148 (293)
                      +++|+||++||+++||++. .+++||+||++||+++++.+|++.+....+...++|+||+.|.+|.++.|++.||.++. 
T Consensus         1 ~~iV~~ge~~Vv~~fGk~~-~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~~~~~-   78 (261)
T TIGR01933         1 IYTIGEAERGVVLRFGKYH-RTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDPYKYL-   78 (261)
T ss_pred             CEEeCCCeEEEEEEcCccc-cccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCHHHHH-
Confidence            5899999999999999997 78999999999999999999997654333344689999999999999888888887642 


Q ss_pred             HHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHH
Q psy9118         149 IVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKN  228 (293)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a  228 (293)
                          |+..+....|++.+++++|+++|+++++++++++|++|++.+.+.+++.++.+++||+|++|.|++++||+++.++
T Consensus        79 ----~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a  154 (261)
T TIGR01933        79 ----FSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEA  154 (261)
T ss_pred             ----HhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHH
Confidence                3444456789999999999999999999999669999999999999999995456999999999999999999999


Q ss_pred             HHHHHHHHHHHHH----HHHHHH-----------HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy9118         229 YELMEAEKTKLLI----SIQHQK-----------VVEKDAETERKRAVIEAEKEAQIAKIQYE  276 (293)
Q Consensus       229 ~~~~~ae~~~~~~----A~q~~~-----------~~e~~AeA~~~~~ii~A~geaea~~i~~~  276 (293)
                      |+++.++++....    |+..+.           ....+|+|++++.+++|+|+|++..+.++
T Consensus       155 ~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~  217 (261)
T TIGR01933       155 FDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLA  217 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            9988776554311    111111           11235666666666777777777666554

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=2.4e-33  Score=252.09  Aligned_cols=201  Identities=16%  Similarity=0.174  Sum_probs=165.1

Q ss_pred             CCeEEEEEeCCccccccccCceEEEcCCcCeEE-EEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHHHHHh
Q psy9118          74 EGHVGVYFRGGALLSTISGPGFHAMIPFITTFR-HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKN  152 (293)
Q Consensus        74 ~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~-~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~  152 (293)
                      +|+.|||++||++. .+++|||||++||++++. .+|+++++++++. .++|+||+.|.+|.++.|++.|+. +...+.+
T Consensus         1 q~~~~Vv~rfGk~~-~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~-~~lTkD~~~V~vd~~v~yrI~d~~-~~~~~~~   77 (262)
T cd03407           1 QSQVAIIERFGKFF-KVAWPGCHFVIPLVETVAGRLSLRVQQLDVRV-ETKTKDNVFVTVVGQIQYRVSEEN-ATDAFYK   77 (262)
T ss_pred             CcEEEEEeecCccc-ccCCCCeEEEeccccceeeEEeeeEEEecCCC-ceEcCCCCEEEEEEEEEEEECCcH-HHHHHHH
Confidence            58999999999998 789999999999999984 8999999999875 579999999999999777776665 2222222


Q ss_pred             hcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHH-
Q psy9118         153 YTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL-  231 (293)
Q Consensus       153 ~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~-  231 (293)
                      ++  +....|.+.+++++|+++|++++++++ ++|+.|+..+.+.+++.++  +|||.|++|.|++++||+++.+++++ 
T Consensus        78 ~~--~~~~~l~~~~~s~lR~vig~~~l~eil-~~R~~I~~~i~~~l~~~l~--~~GI~V~~v~I~~i~~p~~v~~A~~~~  152 (262)
T cd03407          78 LG--NPEEQIQSYVFDVLRARIPKLTLDELF-EQKDEIAKAVEEELREAMS--RYGFEIVATLITDIDPDAEVKRAMNEI  152 (262)
T ss_pred             cC--CHHHHHHHHHHHHHHHHhcCccHHHHH-hhHHHHHHHHHHHHHHHHH--hcCcEEEEEEEEecCCCHHHHHHHHHH
Confidence            32  235689999999999999999999999 6899999999999999999  88999999999999999999999765 


Q ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhH
Q psy9118         232 MEAEKTKL---LISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQ  282 (293)
Q Consensus       232 ~~ae~~~~---~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~~~~e~  282 (293)
                      +.|++++.   .+|+..+.....+|++++++.+++|+|+|++..+.++....+-
T Consensus       153 ~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~  206 (262)
T cd03407         153 NAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESI  206 (262)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            45555543   1222222234458888888889999999999888887665543

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=100.00  E-value=1.6e-32  Score=239.66  Aligned_cols=184  Identities=23%  Similarity=0.260  Sum_probs=157.5

Q ss_pred             ecCCeEEEEEeCCccccccccCceEEEcCCcCeE-EEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHHHH
Q psy9118          72 IEEGHVGVYFRGGALLSTISGPGFHAMIPFITTF-RHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIV  150 (293)
Q Consensus        72 V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v-~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~  150 (293)
                      |+||++||+++||++. .+++||+||++||++++ +.||++.+++++++.++.|+|++++.++..+.|++.||.++... 
T Consensus         1 V~~ge~~Vv~~~G~~~-~~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~-   78 (215)
T cd03403           1 VPQYERGVVERLGKYH-RTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDPVKAVYG-   78 (215)
T ss_pred             CCcceEEEEEEcCcCc-cccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecHHHHHhc-
Confidence            6899999999999998 57999999999999999 99999999999988889999999999999887777788866432 


Q ss_pred             HhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHH
Q psy9118         151 KNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE  230 (293)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~  230 (293)
                          .++....|.+.+++++|+++|++++++++ ++|+.+++.+.+.+++.+.  +|||+|++|.|+++++|+++.++++
T Consensus        79 ----~~~~~~~l~~~~~~~lr~~i~~~~~~el~-~~R~~i~~~i~~~l~~~l~--~~Gi~v~~v~i~~i~~p~~~~~ai~  151 (215)
T cd03403          79 ----VEDYRYAISQLAQTTLRSVIGKMELDELL-SEREEINAELVEILDEATD--PWGVKVERVEIKDIILPQEIQEAMA  151 (215)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHccccHHHHH-hhHHHHHHHHHHHHHHHHh--ccCeEEEEEEEeeecCCHHHHHHHH
Confidence                22235689999999999999999999999 6999999999999999999  8899999999999999999999976


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy9118         231 -LMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAK  272 (293)
Q Consensus       231 -~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~  272 (293)
                       ++.|++++.        ....+|++++++.++.|+|++++..
T Consensus       152 ~~~~A~~~~~--------a~i~~A~ge~~a~~~~aea~~~~~~  186 (215)
T cd03403         152 KQAEAEREKR--------AKIIEAEGERQAAILLAEAAKQAAI  186 (215)
T ss_pred             HHHHHHHHHH--------HHHHHhHHHHHHHHHHHHHHHHHcc
Confidence             445544432        2335777777777788888777654

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=1.7e-32  Score=239.69  Aligned_cols=169  Identities=16%  Similarity=0.196  Sum_probs=149.3

Q ss_pred             ceEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHH
Q psy9118          68 SFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVY  147 (293)
Q Consensus        68 ~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~  147 (293)
                      |+++|+||++||+++||++.+++.+|||||++||++ ...+|+|+++++.+.+.+.|+||+++.++.+++|++.||.++.
T Consensus         1 g~~iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~~~-~~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp~ka~   79 (219)
T cd03402           1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFSS-KKRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDTAKAV   79 (219)
T ss_pred             CeEEECCCeeEEEEEcCcCcccccCCceEEEeccce-EEEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCHHHHH
Confidence            689999999999999999986566999999999985 4789999999999988999999999999999989898998874


Q ss_pred             HHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHh------hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCC
Q psy9118         148 DIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYI------DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKI  221 (293)
Q Consensus       148 ~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~------~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~  221 (293)
                      .     +.++....|.+.+++++|+++|+|+++++++      ++|+++++++.+.+++.++  .|||+|.++.|+++.|
T Consensus        80 ~-----~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~--~~GI~V~~v~I~~l~~  152 (219)
T cd03402          80 F-----NVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLA--VAGVEVVEARITHLAY  152 (219)
T ss_pred             H-----HcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHH--hhCcEEEEEEEEeecC
Confidence            3     3333367899999999999999999999985      3589999999999999999  8999999999999999


Q ss_pred             ChHHHHH-HHHHHHHHHHHHHHHHHH
Q psy9118         222 PETIRKN-YELMEAEKTKLLISIQHQ  246 (293)
Q Consensus       222 p~~v~~a-~~~~~ae~~~~~~A~q~~  246 (293)
                      |+++.+| +++|+|+++..  |++..
T Consensus       153 p~ei~~am~~R~~Ae~~~~--Ar~~~  176 (219)
T cd03402         153 APEIAQAMLQRQQASAIIA--ARRKI  176 (219)
T ss_pred             CHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            9999999 56788887765  54433

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.4e-31  Score=240.23  Aligned_cols=206  Identities=25%  Similarity=0.327  Sum_probs=165.3

Q ss_pred             HHHHHHHHHhhceEEecCCeEEEEEeCCcccccccc-CceEEEcCC---c-CeEEEEEeEEEEEec-CCcccccCCCCeE
Q psy9118          57 SLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISG-PGFHAMIPF---I-TTFRHVQVTLQTDEV-KNVPCGTSGGVMI  130 (293)
Q Consensus        57 ~lv~~l~~l~~~~~~V~~ge~gVv~~~Gk~~~~v~~-pGlh~~~P~---i-~~v~~v~~r~q~~~~-~~~~v~T~D~~~v  130 (293)
                      +++++++++++++++|+|++.|++++||++. .+++ ||+||++||   + ..+..++.+.++++. +++.+.|+|+..|
T Consensus         9 ~l~~~~~~~~~~~~~v~~~~~~vv~r~G~~~-~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V   87 (291)
T COG0330           9 LLVILIVLLFSSIFVVKEGERGVVLRFGRYT-RTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIV   87 (291)
T ss_pred             HHHHHHHHHHceeEEEcCCceEEEEEeccee-eecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEE
Confidence            4566778999999999999999999999998 5777 999999999   3 334677888899999 7899999999999


Q ss_pred             EEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeE
Q psy9118         131 YFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLF  210 (293)
Q Consensus       131 ~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~  210 (293)
                      .+|.++.|++.|+.+..     |..++....|.+.+++.||+++|++++++++++.+..++..+.+.+++.++  +|||.
T Consensus        88 ~vd~~v~~rv~d~~~~~-----~~v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~--~~Gi~  160 (291)
T COG0330          88 SVDAVVQYRVTDPQKAV-----YNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAAD--PWGIK  160 (291)
T ss_pred             EEEEEEEEEEcCHHHHH-----HhcCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhh--hcCcE
Confidence            99999888888888443     233335778999999999999999999999964444999999999999999  89999


Q ss_pred             EEEEEecCCCCChHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9118         211 IQAVRVTKPKIPETIRKNY-ELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQK  278 (293)
Q Consensus       211 I~~v~I~~i~~p~~v~~a~-~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~~  278 (293)
                      |.+|.|++++||+++.+++ ++|.+++++.  +..      .+|++++++.+++|+|+++++.+.++..
T Consensus       161 V~~V~i~~i~~p~ev~~a~~~~~~Aer~~r--a~i------~~Ae~~~~~~~~~a~g~~~a~~i~aea~  221 (291)
T COG0330         161 VVDVEIKDIDPPEEVQAAMEKQMAAERDKR--AEI------LEAEGEAQAAILRAEGEAEAAIILAEAE  221 (291)
T ss_pred             EEEEEEeecCCCHHHHHHHHHHHHHHHHHH--HHH------HHhHhHHhhhhhhhhhhHHHHHHHHHHH
Confidence            9999999999999999996 4677776654  222      2444444444455555555555544443

>smart00244 PHB prohibitin homologues

Probab=99.96  E-value=1.5e-28  Score=203.99  Aligned_cols=159  Identities=28%  Similarity=0.398  Sum_probs=141.8

Q ss_pred             hceEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcH
Q psy9118          67 YSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSV  146 (293)
Q Consensus        67 ~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i  146 (293)
                      +||++|+||++||+++||++. .+++||+||++||++++..+|++.++++.+...+.|+|++++.++..+.|++.||.+.
T Consensus         1 ~~~~~V~~g~~~v~~~~G~~~-~~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~~~   79 (160)
T smart00244        1 AAIKVVGEGEAGVVERLGRVL-RVLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPLKA   79 (160)
T ss_pred             CcEEEEcccEEEEEEecCccc-cccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccHHHH
Confidence            489999999999999999998 4899999999999999999999999999887889999999999999988887888654


Q ss_pred             HHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHH
Q psy9118         147 YDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR  226 (293)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~  226 (293)
                      .  +..++.+  ...|++.+++++|+++|+++++++++++|+++++.+.+.+++.++  ++|++|.++.|+++++|+++.
T Consensus        80 ~--~~~~~~~--~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~--~~Gi~i~~v~i~~i~~p~~i~  153 (160)
T smart00244       80 V--YRVLDAD--YAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAE--AWGIEVEDVEIKDIRLPEEIQ  153 (160)
T ss_pred             h--hhcCCHH--HHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHH--hCCCEEEEEEEEecCCCHHHH
Confidence            2  2222221  258999999999999999999999954799999999999999999  789999999999999999999


Q ss_pred             HHHHHH
Q psy9118         227 KNYELM  232 (293)
Q Consensus       227 ~a~~~~  232 (293)
                      ++++++
T Consensus       154 ~ai~~k  159 (160)
T smart00244      154 EAMEQQ  159 (160)
T ss_pred             HHHHhh
Confidence            998753

prohibitin homologues

>KOG2620|consensus

Probab=99.96  E-value=2.3e-30  Score=223.20  Aligned_cols=203  Identities=17%  Similarity=0.196  Sum_probs=167.2

Q ss_pred             hceEE--ecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEE-eEEEEEecCCcccccCCCCeEEEEEEEEEEEech
Q psy9118          67 YSFHK--IEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQ-VTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSV  143 (293)
Q Consensus        67 ~~~~~--V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~-~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~  143 (293)
                      +|+.+  ||+.+++|+.||||+. ++++||+||..|+++++..+. ++-.....+.+...|+|++.+.+|.+++++++||
T Consensus         5 ~n~vi~~VpQ~~a~VvER~GkF~-~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~dp   83 (301)
T KOG2620|consen    5 TNTVIRFVPQQEAAVVERFGKFH-RILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVDP   83 (301)
T ss_pred             ceeeEEeechhHhHHHHHhhhhh-hhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEecc
Confidence            34444  9999999999999998 899999999999988876443 2222334456788999999999999998899999


Q ss_pred             hcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCCh
Q psy9118         144 SSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPE  223 (293)
Q Consensus       144 ~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~  223 (293)
                      ++- |.  +|+..+....|..++++.+|+.+|++|||.++ +.|+.++..|.++|+..+.  .||++|....|.||.||+
T Consensus        84 ~~~-dA--sYgvenp~~aI~qlaqttmRsevgkltLD~vF-eer~~ln~sI~eainkA~~--~wG~~clr~eIrDI~pp~  157 (301)
T KOG2620|consen   84 YAD-DA--SYGVENPEYAIQQLAQTTMRSEVGKLTLDKVF-EERNSLNKSIVEAINKAME--AWGYECLRYEIRDIEPPP  157 (301)
T ss_pred             ccc-cc--ccccCCHHHHHHHHHHHHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHHHH--HhHHHHHHHhhhhcCCCH
Confidence            984 22  67877777889999999999999999999999 8999999999999999999  999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHH
Q psy9118         224 TIRKNYEL-MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQES  284 (293)
Q Consensus       224 ~v~~a~~~-~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~~~~e~~~  284 (293)
                      .+..||+- .+|||.+.  |+      .-++|++|++.|-+|+|++++.-+-.+...+|..+
T Consensus       158 ~V~~AM~~q~~AeR~kr--Aa------ilesEger~~~InrAEGek~s~iL~seg~~~qr~n  211 (301)
T KOG2620|consen  158 SVKRAMNMQNEAERMKR--AA------ILESEGERIAQINRAEGEKESKILASEGIARQRQN  211 (301)
T ss_pred             HHHHHHHHHHHHHHHHH--HH------HhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHH
Confidence            99999862 33444332  32      25788888999999999998877766665555544

>KOG3090|consensus

Probab=99.96  E-value=2.5e-27  Score=200.10  Aligned_cols=215  Identities=17%  Similarity=0.209  Sum_probs=188.1

Q ss_pred             HHHHHHHHHHhhceEEecCCeEEEEEe-CCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEE
Q psy9118          56 VSLFSLLLVFNYSFHKIEEGHVGVYFR-GGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDR  134 (293)
Q Consensus        56 ~~lv~~l~~l~~~~~~V~~ge~gVv~~-~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~  134 (293)
                      +++.+.+..+..|+|.|+-|+++|+++ +|++...+++.|+||.+||+++.+.||+|-+...+. .+..|+|-++|+++.
T Consensus        25 ~~~G~~~y~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~-S~tGskDLQmVnI~l  103 (290)
T KOG3090|consen   25 LIGGLGAYGVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDVRARPRLIS-SPTGSKDLQMVNIGL  103 (290)
T ss_pred             HHhchhhheecceeEeecCCceEEEEeccccchhccccCCceEeeeccccceeeeeccCccccc-CCCCCcceeEEEeee
Confidence            344556677788999999999999997 899988899999999999999999999998877665 356899999999864


Q ss_pred             EEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Q psy9118         135 IEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAV  214 (293)
Q Consensus       135 ~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v  214 (293)
                      - ++.+.++...+.+|+.+|.+|++..|-+++.+.|+.++++|+..+++ +.|+.++..|++.|.++..  +..|.++||
T Consensus       104 R-VLsRP~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLI-TQRe~VSrliRk~L~eRA~--~Fni~LDDV  179 (290)
T KOG3090|consen  104 R-VLSRPMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLI-TQREQVSRLIRKILTERAA--DFNIALDDV  179 (290)
T ss_pred             E-EecCCChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHh--ccceEeecc
Confidence            4 45667889999999999999999999999999999999999999999 7999999999999999999  779999999


Q ss_pred             EecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9118         215 RVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKV  279 (293)
Q Consensus       215 ~I~~i~~p~~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~~~  279 (293)
                      .|+.++|.+++..|++.++-++|.+    |.......+|+.+++..|++|+|||+++++..++..
T Consensus       180 SiT~l~F~~efTaAiEaKQvA~QeA----qRA~F~VekA~qek~~~ivrAqGEaksAqliGeAi~  240 (290)
T KOG3090|consen  180 SITELTFGKEFTAAIEAKQVAAQEA----QRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIK  240 (290)
T ss_pred             eeeeeecCHHHHHHHHHHHHHHHHH----hhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHHHh
Confidence            9999999999999998877665543    233334458999999999999999999999988643

>KOG2621|consensus

Probab=99.96  E-value=3.8e-28  Score=211.83  Aligned_cols=191  Identities=20%  Similarity=0.281  Sum_probs=161.9

Q ss_pred             HHHHHhhceEEecCCeEEEEEeCCcccc-ccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEE
Q psy9118          61 LLLVFNYSFHKIEEGHVGVYFRGGALLS-TISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN  139 (293)
Q Consensus        61 ~l~~l~~~~~~V~~ge~gVv~~~Gk~~~-~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~  139 (293)
                      ..+-++.|+.+|+++|++|++|+|++.. ...|||+.|.+|++++..++|+|+++++++++.++|+|...+.+|++++++
T Consensus        47 fP~S~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyr  126 (288)
T KOG2621|consen   47 FPISIWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYR  126 (288)
T ss_pred             hHHHHHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEE
Confidence            3467778999999999999999999873 367999999999999999999999999999999999999999999998777


Q ss_pred             EechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCC
Q psy9118         140 VLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP  219 (293)
Q Consensus       140 ~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i  219 (293)
                      +.||.-...-     .++.....+-.++..||+++|+.++.|++ ++|+.++.++...|.+...  .|||+|++|.|+|+
T Consensus       127 i~dpi~sv~~-----V~Da~~sTr~lAqttLrn~lgtk~L~eil-s~r~~is~~~~~~Ld~~T~--~WGvkVeRVEikDv  198 (288)
T KOG2621|consen  127 ISDPIIAVNN-----VGDADNATRLLAQTTLRNYLGTKTLSEIL-SSREVIAQEAQKALDEATE--PWGVKVERVEIKDV  198 (288)
T ss_pred             ecCHHHHHHh-----ccCHHHHHHHHHHHHHHHHHccCcHHHHH-HhHHHHHHHHHHHhhhccc--ccceEEEEEEEeee
Confidence            7777654322     22234567788899999999999999999 6999999999999999988  99999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9118         220 KIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQ  277 (293)
Q Consensus       220 ~~p~~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~  277 (293)
                      .+|.+...++.            .      |++|.+++.+.++.|+||..|.+-.+++
T Consensus       199 rlp~qlqrama------------a------eAeA~reA~Akviaaege~~as~al~~a  238 (288)
T KOG2621|consen  199 RLPAQLQRAMA------------A------EAEATREARAKVIAAEGEKKASEALKEA  238 (288)
T ss_pred             echHhhhhhhh------------c------hhhhhhhhhhhHHHHHhhhHHHHHHHHh
Confidence            99999888762            1      2456666677778888888776655554

>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance

Probab=99.95  E-value=1.9e-27  Score=200.75  Aligned_cols=158  Identities=25%  Similarity=0.379  Sum_probs=101.3

Q ss_pred             EEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCC--cccccCCCCeEEEEEEEEEEEechhcHH
Q psy9118          70 HKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKN--VPCGTSGGVMIYFDRIEVVNVLSVSSVY  147 (293)
Q Consensus        70 ~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~--~~v~T~D~~~v~vd~~~v~~~~d~~~i~  147 (293)
                      ++|+||++||++++|++. .+++||+||.+||++++..+|++.+++++..  ..+.|+|+.++.++..+.|++.++..+.
T Consensus         1 ~~V~~g~~~V~~~~G~~~-~~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~~~~   79 (179)
T PF01145_consen    1 YTVPPGEVGVVVRFGKVK-DVLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPPKFV   79 (179)
T ss_dssp             --------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CCCCC
T ss_pred             CEeCCCEEEEEEECCeEe-EEECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEechHHHHH
Confidence            589999999999999998 5899999999999999999999999999886  7999999999999988777665555543


Q ss_pred             HHHHhh--cccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHH
Q psy9118         148 DIVKNY--TADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETI  225 (293)
Q Consensus       148 ~~~~~~--~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v  225 (293)
                      .   .|  +.......|++.+++++|++++++++++++ ++|.++.+.+++.+++.+.  ++||+|.+|.|.++++|+++
T Consensus        80 ~---~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~-~~r~~~~~~v~~~l~~~~~--~~Gi~i~~v~i~~~~~~~~~  153 (179)
T PF01145_consen   80 Q---NYEGGEEDPENLLRQIVESALREVISSYSLEEIY-SNREEIADEVREQLQEALE--EYGIEITSVQITDIDPPQEV  153 (179)
T ss_dssp             C---CCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHH-HTHHHHHHHHHHHHHHHHG--GGTEEEEEEEEEEEEECTTH
T ss_pred             H---hhhcchhhhhhhhhhhhhhhhheEeeeeehHHhh-hhhhhhhHhHHHHHhhhcc--ccEEEEEEEEEeecCCCHHH
Confidence            3   33  223457899999999999999999999999 5799999999999999999  78999999999999999999


Q ss_pred             HHHHHHHHH
Q psy9118         226 RKNYELMEA  234 (293)
Q Consensus       226 ~~a~~~~~a  234 (293)
                      .++++....
T Consensus       154 ~~~i~~~~~  162 (179)
T PF01145_consen  154 EEAIEEKQR  162 (179)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999865444

A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.

>KOG3083|consensus

Probab=99.91  E-value=8.6e-24  Score=178.57  Aligned_cols=212  Identities=18%  Similarity=0.218  Sum_probs=183.2

Q ss_pred             HHHHHHHHHhhceEEecCCeEEEEEe-CCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEE
Q psy9118          57 SLFSLLLVFNYSFHKIEEGHVGVYFR-GGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRI  135 (293)
Q Consensus        57 ~lv~~l~~l~~~~~~V~~ge~gVv~~-~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~  135 (293)
                      .+.++..++-++.|.|+-|+++|++. |-++.+.+.+.|-||.+||.++.+.||+|.+..+++. ...|+|-++|++..-
T Consensus        15 ~l~v~~~~~~s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~-itGskdLQ~VniTlr   93 (271)
T KOG3083|consen   15 ALAVAGGVVNSALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPV-ITGSKDLQNVNITLR   93 (271)
T ss_pred             hhHHhhhhhhhhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCcEEEeccCCCccccc-ccCchhhhcccceEE
Confidence            34455668889999999999999997 8888878999999999999999999999887666642 347889888887644


Q ss_pred             EEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEE
Q psy9118         136 EVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVR  215 (293)
Q Consensus       136 ~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~  215 (293)
                       ++....+.+.+.++.+.|.+|++..|-++..+.|++++++++..+++ +.|+-++..+.+.+.+...  ..||.+++|.
T Consensus        94 -il~rp~~sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eli-TqRe~vS~~v~~~lt~rA~--~Fgl~Lddvs  169 (271)
T KOG3083|consen   94 -ILFRPVVSQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELI-TQRELVSRQVSNDLTERAA--TFGLILDDVS  169 (271)
T ss_pred             -EEecccccccchHHHhhcccccccccccchHHHHHHHHHhccccchh-hhhHHHHHHHHHHHHHHHH--hhCeeechhh
Confidence             44555678999999999999999999999999999999999999999 7999999999999999999  7899999999


Q ss_pred             ecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9118         216 VTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQ  277 (293)
Q Consensus       216 I~~i~~p~~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~  277 (293)
                      |+.++|-.++.+|.+.++-+||..++|    .....+||.++++.+|.|||+++|+++.+..
T Consensus       170 iThltfGkEFt~AvE~KQVAQQEAEra----rFvVeKAeQqk~aavIsAEGds~aA~li~~s  227 (271)
T KOG3083|consen  170 ITHLTFGKEFTEAVEAKQVAQQEAERA----RFVVEKAEQQKKAAVISAEGDSKAAELIANS  227 (271)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhheeecccchHHHHHHHHH
Confidence            999999999999998888777654332    2344589999999999999999999998753

>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.82  E-value=2.2e-19  Score=155.70  Aligned_cols=164  Identities=16%  Similarity=0.161  Sum_probs=130.7

Q ss_pred             HHhhceEEecCCeEEEEEeCCccccccccCceEEEc----CCc---------------CeEEEEEeEEEEEecC--C---
Q psy9118          64 VFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMI----PFI---------------TTFRHVQVTLQTDEVK--N---  119 (293)
Q Consensus        64 ~l~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~----P~i---------------~~v~~v~~r~q~~~~~--~---  119 (293)
                      +.++|.++|++|+.||++++|++. .+++||.|+.+    |++               ..|+.++++.+.....  +   
T Consensus        11 i~~~s~~iV~e~~~av~~~~Gk~~-~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   89 (207)
T cd03408          11 IKNGSQLIVREGQAAVFVNEGKVA-DVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPV   89 (207)
T ss_pred             cccCCEEEEcCCcEEEEEECCEEE-EEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCe
Confidence            456799999999999999999998 56677666544    543               3478899988776431  1   


Q ss_pred             -cccccCCCCeEEEEEEEEEEEechhcHHHHHHh----hcccccchhHHHHHHHHHHHHhhcCcHHHHHhhh-HHHHHHH
Q psy9118         120 -VPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKN----YTADYDKALIFNKVHHELNQFCSIHNLHEVYIDL-FDQIDEN  193 (293)
Q Consensus       120 -~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~----~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~-R~~i~~~  193 (293)
                       ....|.|++++.+++.+.|++.||.+++.-+..    |..+.....|++.+++++|+++|++++++++... |+++++.
T Consensus        90 ~~~~~~~~~v~v~v~~~~~~kI~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~  169 (207)
T cd03408          90 FGRDSEFGGVPLRAFGTYSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKA  169 (207)
T ss_pred             eeeCCccceEEEEeeEEEEEEEcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHH
Confidence             123677889999998877888899877543321    1111236789999999999999999999999544 9999999


Q ss_pred             HHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHH
Q psy9118         194 LKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE  230 (293)
Q Consensus       194 i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~  230 (293)
                      +.+.+.+.++  .+||+|.+|.|+++++|+++.+++.
T Consensus       170 v~~~l~~~~~--~~Gi~i~~v~I~~i~~p~e~~~ai~  204 (207)
T cd03408         170 VREALAPWFA--SFGLELVSVYIESISYPDEVQKLID  204 (207)
T ss_pred             HHHHHHHHHH--hcCcEEEEEEEEeecCCHHHHHHHH
Confidence            9999999999  7899999999999999999998875

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.78  E-value=5.1e-17  Score=155.56  Aligned_cols=159  Identities=12%  Similarity=0.144  Sum_probs=125.8

Q ss_pred             ceEEecCCeEEEEEeC---------CccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEE
Q psy9118          68 SFHKIEEGHVGVYFRG---------GALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVV  138 (293)
Q Consensus        68 ~~~~V~~ge~gVv~~~---------Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~  138 (293)
                      .+|++.+...+++..+         |.- ..++.+|+||.+|++++..++++++..+++....+.|+||.+++++.+.++
T Consensus        33 ~~y~~a~~~~aLI~~g~~~g~~~~~g~~-~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v  111 (548)
T COG2268          33 RFYIIARPNEALIRTGSKLGSKDEAGGG-QKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYV  111 (548)
T ss_pred             eeEEecCCCceEEEeccccCCcccccCC-ccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEEE
Confidence            6666555555555554         332 257889999999999999999999999888767899999999998766544


Q ss_pred             EEec-hhcHHHHHHhhccc----ccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEE
Q psy9118         139 NVLS-VSSVYDIVKNYTAD----YDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQA  213 (293)
Q Consensus       139 ~~~d-~~~i~~~~~~~~~~----~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~  213 (293)
                      .+-+ ..-+......++..    .....+...++++||.+++++|+.+++ ++|..|++.+.+.+..+|+  ..|+.|++
T Consensus       112 ~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~-edR~~F~~~V~~~v~~dL~--k~Gl~l~s  188 (548)
T COG2268         112 KIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELN-EDRLGFAQVVQEVVGDDLS--KMGLVLDS  188 (548)
T ss_pred             EecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHh-hHHhhHHHHHHHHHHHHHH--hcCeeeee
Confidence            4422 23333334445433    226778999999999999999999999 7999999999999999999  66999999


Q ss_pred             EEecCCCCC-------hHHHHHHH
Q psy9118         214 VRVTKPKIP-------ETIRKNYE  230 (293)
Q Consensus       214 v~I~~i~~p-------~~v~~a~~  230 (293)
                      +.|.++..+       ..|.++..
T Consensus       189 ~~I~~i~d~~~~~~d~~~yLda~G  212 (548)
T COG2268         189 LAINDINDTSKENQDPNNYLDALG  212 (548)
T ss_pred             eeecccccccccccChhhhhhhcC
Confidence            999999999       88998843

>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.77  E-value=6.7e-18  Score=134.98  Aligned_cols=120  Identities=16%  Similarity=0.243  Sum_probs=106.2

Q ss_pred             EEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhH
Q psy9118         108 VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLF  187 (293)
Q Consensus       108 v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R  187 (293)
                      +|+|.++.+. ...++|+||.++.+|.++.|+ +++.++...+..++.++.+..|++.+++++|+++|+|+++++++++|
T Consensus         3 ~~~r~~~~~~-~~~v~T~D~~~v~vd~~v~y~-V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R   80 (124)
T cd03400           3 YSTRLQEVDE-KIDVLSKEGLSINADVSVQYR-INPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKR   80 (124)
T ss_pred             ccceeeeccc-ceEEECCCCCEEEEEEEEEEE-EChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhH
Confidence            6788887765 468999999999999885555 47777888887787665677899999999999999999999996689


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHH
Q psy9118         188 DQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL  231 (293)
Q Consensus       188 ~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~  231 (293)
                      ++|++.+.+.+++.+.  +|||+|.+|.|++++||+++.+|++.
T Consensus        81 ~~i~~~i~~~l~~~~~--~~Gi~v~~v~i~~i~~P~~v~~aI~~  122 (124)
T cd03400          81 KEIESAIKKELIEEFV--GDGLILEEVLLRNIKLPDQIADAIEA  122 (124)
T ss_pred             HHHHHHHHHHHHHHhc--cCCeEEEEEEEecccCCHHHHHHHHh
Confidence            9999999999999999  88999999999999999999999874

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.70  E-value=1.6e-16  Score=127.73  Aligned_cols=119  Identities=15%  Similarity=0.185  Sum_probs=105.3

Q ss_pred             EEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHH-HHHHhhcc---cccchhHHHHHHHHHHHHhhcCcHHHHH
Q psy9118         108 VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVY-DIVKNYTA---DYDKALIFNKVHHELNQFCSIHNLHEVY  183 (293)
Q Consensus       108 v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~-~~~~~~~~---~~~~~~l~~~~~~~lr~~~~~~tl~eil  183 (293)
                      +|+|+++++++++.+.|+|++++.+++++.|++.|+.+++ ..+..|+.   +.....+.+.+++++|+++|++++++++
T Consensus         2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~   81 (128)
T cd03399           2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIY   81 (128)
T ss_pred             ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            5788999999989999999999999999888888887654 44445532   2347889999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHH
Q psy9118         184 IDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNY  229 (293)
Q Consensus       184 ~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~  229 (293)
                       ++|++|.+++.+.+++.++  +|||+|.+|.|++|++|++|.+++
T Consensus        82 -~~R~~i~~~i~~~v~~~~~--~~Gi~i~~v~I~~i~~~~~~~~~~  124 (128)
T cd03399          82 -EDRDKFAEQVQEVVAPDLN--KMGLELDSFTIKDITDTDGYLNNL  124 (128)
T ss_pred             -HhHHHHHHHHHHHHHHHHH--HCCCEEEEEeeEEecCCCCCHHHc
Confidence             6999999999999999999  899999999999999999988875

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.

>KOG2668|consensus

Probab=99.69  E-value=2.4e-15  Score=135.03  Aligned_cols=208  Identities=14%  Similarity=0.110  Sum_probs=147.3

Q ss_pred             ceEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEe--chh-
Q psy9118          68 SFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVL--SVS-  144 (293)
Q Consensus        68 ~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~--d~~-  144 (293)
                      +|++..+++.-++..+|.-. ..+-+| .|.+|| +++..+|+.+.++++....+.|+.|+++.+.++....+.  |+. 
T Consensus         1 ~f~~~~~~~~l~itg~g~~~-~~lv~~-~wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e   77 (428)
T KOG2668|consen    1 MFKVAGASQYLAITGGGIED-IKLVKK-SWVFPW-QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE   77 (428)
T ss_pred             CCccCCccceEEeecccccC-ceeccc-ceeeee-eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence            35667788888888887643 334444 356677 999999999999999887899999999999887666642  222 


Q ss_pred             -cHHHHHHhhcccc--cchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCC
Q psy9118         145 -SVYDIVKNYTADY--DKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKI  221 (293)
Q Consensus       145 -~i~~~~~~~~~~~--~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~  221 (293)
                       ..+-...++|...  -+.++..++++.+|.+.|++|++++| .+|.+|...+.+..+.+|.  ..||.|.+++|+|+..
T Consensus        78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIy-Kdrk~F~k~Vfeva~~dl~--~mGi~I~s~tiKdl~D  154 (428)
T KOG2668|consen   78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIY-KDRKEFKKEVFEVAQLDLG--QMGIVIYSATIKDLVD  154 (428)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHH-hhHHHHHHHHHHHhhhhhh--hcceEEEEeEhhhhhc
Confidence             2233334555432  26788999999999999999999999 8999999999999999999  6699999999999988


Q ss_pred             Ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHhHHHHHHH
Q psy9118         222 PE--TIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKE--AQIAKIQYEQKVMEQESKQRV  288 (293)
Q Consensus       222 p~--~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~ge--aea~~i~~~~~~~e~~~~~~~  288 (293)
                      .+  +|..++...+...       -.+......|||.+++-|-+|.|.  ..++++.++.++....+.+.+
T Consensus       155 ~~g~~YlssLGka~tae-------v~rdArIgvAEAk~eaGikEa~~~~~~~aak~~aetkI~~~qR~~el  218 (428)
T KOG2668|consen  155 VPGHEYLSSLGKATTAE-------VARDARIGVAEAKREAGIKEATGLTEQNAAKIDAETKIASAQRTKEL  218 (428)
T ss_pred             ccchHHHHHhhhHHHHH-------HHhhcccchHHhhhhcchhhhhHHHHHhHHhhhhhhhHHHhhhhHHH
Confidence            88  6888865432211       001111134555556555555554  334555555555554444433

>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins

Probab=99.47  E-value=1.7e-12  Score=101.74  Aligned_cols=116  Identities=19%  Similarity=0.217  Sum_probs=95.7

Q ss_pred             eEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHH
Q psy9118         110 VTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQ  189 (293)
Q Consensus       110 ~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~  189 (293)
                      .+..+.+.+...+.|+||.++.++.++.|++.++..+  .+.+.+..+ ...|.+.+.+++|+++++++++++. ++|.+
T Consensus         4 ~~~~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~~~~--~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~-~~r~~   79 (121)
T cd02106           4 LRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKA--LYNVRDPED-EEALRQLAQSALRSVIGKMTLDELL-EDRDE   79 (121)
T ss_pred             ceeEEecCCCceEEecCCCEEEEEEEEEEEEeCHHHH--HHhcCCccH-HHHHHHHHHHHHHHHHccccHHHHH-hhHHH
Confidence            3445556666789999999999998877777666612  222222222 5789999999999999999999998 79999


Q ss_pred             HHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHH
Q psy9118         190 IDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL  231 (293)
Q Consensus       190 i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~  231 (293)
                      +++.+++.+...++  .+|++|.+|.|.++++|+++.+++++
T Consensus        80 i~~~v~~~l~~~~~--~~Gi~i~~v~i~~i~~~~~~~~ai~~  119 (121)
T cd02106          80 IAAEVREALQEDLD--KYGIEVVDVRIKDIDPPEEVQEAMED  119 (121)
T ss_pred             HHHHHHHHHHHHHH--hcCCEEEEEEEEecCCCHHHHHHHHh
Confidence            99999999999999  88999999999999999999999864

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i

>PF13421 Band_7_1: SPFH domain-Band 7 family

Probab=99.26  E-value=7.1e-10  Score=96.46  Aligned_cols=162  Identities=15%  Similarity=0.206  Sum_probs=116.4

Q ss_pred             hhceEEecCCeEEEEEeCCccccccccCceEEE-------------------cCCcCeEEEEEeEEEE-EecC-Cccc--
Q psy9118          66 NYSFHKIEEGHVGVYFRGGALLSTISGPGFHAM-------------------IPFITTFRHVQVTLQT-DEVK-NVPC--  122 (293)
Q Consensus        66 ~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~-------------------~P~i~~v~~v~~r~q~-~~~~-~~~v--  122 (293)
                      .+|-.+|++||.||+++-|++. .+++||.|-.                   .||-..|+.++++... +.+. +.++  
T Consensus        13 ~GS~LiV~egQ~Avfv~~G~i~-d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi~~   91 (211)
T PF13421_consen   13 NGSQLIVREGQCAVFVNDGKIA-DVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPIPY   91 (211)
T ss_pred             CCCEEEECCCCEEEEEECCEEE-EEecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCeee
Confidence            5678899999999999999998 5999999943                   3555678888887653 2221 1122  


Q ss_pred             ccCCCCeEEEE--EEEEEEEechhcHHHHHHhhcccc----cchhHHHHHHHHHHHHhhc--CcHHHHHhhhHHHHHHHH
Q psy9118         123 GTSGGVMIYFD--RIEVVNVLSVSSVYDIVKNYTADY----DKALIFNKVHHELNQFCSI--HNLHEVYIDLFDQIDENL  194 (293)
Q Consensus       123 ~T~D~~~v~vd--~~~v~~~~d~~~i~~~~~~~~~~~----~~~~l~~~~~~~lr~~~~~--~tl~eil~~~R~~i~~~i  194 (293)
                      ...+-..|.+.  +..-+++.||..+..-+..-...+    ...++++.+..++.+.+++  +++.++- .+-.+|++.+
T Consensus        92 ~D~~~~~v~lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~-a~~~eis~~~  170 (211)
T PF13421_consen   92 RDPEYGPVRLRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIP-AHLDEISEAL  170 (211)
T ss_pred             cCCCCCcEEEEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHH
Confidence            22222233333  333345678877754322111111    2567888888888888885  6888888 6889999999


Q ss_pred             HHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHH
Q psy9118         195 KTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL  231 (293)
Q Consensus       195 ~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~  231 (293)
                      ++.+++.++  .+||+|+++.|.+|++|++..+++++
T Consensus       171 ~~~l~~~~~--~~Gi~l~~f~I~~i~~pee~~~~i~~  205 (211)
T PF13421_consen  171 KEKLNPEFE--RYGIELVDFGIESISFPEEVQKAIDK  205 (211)
T ss_pred             HHHHHHHHH--hcCcEEEEEEEEeecCCHHHHHHHHH
Confidence            999999998  78999999999999999999998864

>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]

Probab=98.66  E-value=1.1e-06  Score=77.87  Aligned_cols=164  Identities=10%  Similarity=0.122  Sum_probs=114.9

Q ss_pred             HhhceEEecCCeEEEEEeCCccccccccCceE-------------------EEcCCcCeEEEEEeEEEE-EecC-Ccccc
Q psy9118          65 FNYSFHKIEEGHVGVYFRGGALLSTISGPGFH-------------------AMIPFITTFRHVQVTLQT-DEVK-NVPCG  123 (293)
Q Consensus        65 l~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh-------------------~~~P~i~~v~~v~~r~q~-~~~~-~~~v~  123 (293)
                      --.|...|.|++-++.+.-|++.+..-++|.+                   |..|+-+.|+.++++.+. +.+. ++++.
T Consensus        37 ~nGs~l~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qpin  116 (345)
T COG4260          37 QNGSILHVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQPIN  116 (345)
T ss_pred             ccCcEEEEecCceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEEecceecceecCCCCCee
Confidence            35678899999999999999998655568875                   224556788888887665 4332 22222


Q ss_pred             cCC---C--CeEEEEEEEEEEEechhcHHHHHHhhcccc----cchhHHHHHHHHHHHHhhcCcH--HHHHhhhHHHHHH
Q psy9118         124 TSG---G--VMIYFDRIEVVNVLSVSSVYDIVKNYTADY----DKALIFNKVHHELNQFCSIHNL--HEVYIDLFDQIDE  192 (293)
Q Consensus       124 T~D---~--~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~----~~~~l~~~~~~~lr~~~~~~tl--~eil~~~R~~i~~  192 (293)
                      --|   .  ..+....+.-+.+.||-.+++.+..-.+.|    -++.+-+.+..+|...++++-.  ..+ ..+.-+|+.
T Consensus       117 ~~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~l-tan~~elsk  195 (345)
T COG4260         117 YFDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFL-TANQMELSK  195 (345)
T ss_pred             cccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhh-hhhHHHHHH
Confidence            222   2  233333332344567776655443322223    2667788888999998888743  333 357789999


Q ss_pred             HHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHH
Q psy9118         193 NLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL  231 (293)
Q Consensus       193 ~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~  231 (293)
                      .+.+.|.+++.  .+|..|++|.|-+|++|++.++.+++
T Consensus       196 ~m~e~Ld~q~~--q~Gm~v~sfqvaSisypde~Q~lin~  232 (345)
T COG4260         196 YMAEVLDEQWT--QYGMAVDSFQVASISYPDESQALINM  232 (345)
T ss_pred             HHHHHHhHHHH--hhCceEeeEEEEEecCcHHHHHHHHh
Confidence            99999999999  66999999999999999999998763

>PTZ00491 major vault protein; Provisional

Probab=97.99  E-value=0.0011  Score=67.31  Aligned_cols=159  Identities=11%  Similarity=0.054  Sum_probs=93.3

Q ss_pred             EEecCCeEEEEEeC--CccccccccCceEEEcCCcCeEEEEEeE---------EEEEec--------CCcccccCCCCeE
Q psy9118          70 HKIEEGHVGVYFRG--GALLSTISGPGFHAMIPFITTFRHVQVT---------LQTDEV--------KNVPCGTSGGVMI  130 (293)
Q Consensus        70 ~~V~~ge~gVv~~~--Gk~~~~v~~pGlh~~~P~i~~v~~v~~r---------~q~~~~--------~~~~v~T~D~~~v  130 (293)
                      |.||-+...=++.+  ++- +.++||-+.+.-|- +.+..++++         +..+-+        +...+-|+|...+
T Consensus       465 ~~vphn~avqvydyk~~~~-Rvv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL  542 (850)
T PTZ00491        465 YKVPHNAAVQLYDYKTKKS-RVVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARL  542 (850)
T ss_pred             EEcCCCcEEEEEEcccCce-EEEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceE
Confidence            45665555555553  333 36789999888886 555555542         111111        1235789999988


Q ss_pred             EEEEEEEEEEe-chhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHH------hh
Q psy9118         131 YFDRIEVVNVL-SVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRE------LN  203 (293)
Q Consensus       131 ~vd~~~v~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~------l~  203 (293)
                      .+.....|++- ++..-.+..+-|...+.-..+-..+.+.+|..+++.+.+++..+.-.-|.+.|.....+.      +.
T Consensus       543 ~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~  622 (850)
T PTZ00491        543 ALQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLR  622 (850)
T ss_pred             EEEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceE
Confidence            88766556552 333232333334433333346677888999999999999998432333444444311111      11


Q ss_pred             cCCCCeEEEEEEecCCCCChHH-HHHHH
Q psy9118         204 EMAPGLFIQAVRVTKPKIPETI-RKNYE  230 (293)
Q Consensus       204 ~~~~GI~I~~v~I~~i~~p~~v-~~a~~  230 (293)
                      =-..|+-|++|.|+++.+-++- +++++
T Consensus       623 F~~N~lvit~VDvqsvEpvD~~tr~~Lq  650 (850)
T PTZ00491        623 FPANNLVITNVDVQSVEPVDERTRDSLQ  650 (850)
T ss_pred             EccCCeEEEEEeeeeeeecCHHHHHHHH
Confidence            0146899999999999987653 33443

>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365

Probab=95.62  E-value=0.33  Score=43.53  Aligned_cols=108  Identities=12%  Similarity=0.156  Sum_probs=73.6

Q ss_pred             EecCCcccccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHH
Q psy9118         115 DEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENL  194 (293)
Q Consensus       115 ~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i  194 (293)
                      ++-|......+||..+.+.+    +++....+.   +..|...+++.+-.+-++.+..+-+.-+-.+++ ++-+.|+..+
T Consensus       127 I~~P~i~aVAkdGIql~~kA----rVTVRaNi~---rLVGGAgEeTIiARVGEgIVttiGSa~~hk~VL-EnPd~ISk~V  198 (316)
T PF12127_consen  127 IDTPTIAAVAKDGIQLKVKA----RVTVRANID---RLVGGAGEETIIARVGEGIVTTIGSAESHKEVL-ENPDSISKTV  198 (316)
T ss_pred             ecCcchhhhhcCCeEEEEEE----EEEEEecHH---HhccCCCcHHHHHHHccceeeeeccchhHHHHh-cCHHHHHHHH
Confidence            33444556789998887643    333333333   235655567778778788877777777889999 7888888776


Q ss_pred             HHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHHHHH
Q psy9118         195 KTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEA  234 (293)
Q Consensus       195 ~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~~~a  234 (293)
                      .   .+-|+. +.-++|.++.|-|++.-+.+-..++.-|+
T Consensus       199 L---~kgLDa-gTAFeIlSIDIaDidVG~NIGA~Lq~dQA  234 (316)
T PF12127_consen  199 L---EKGLDA-GTAFEILSIDIADIDVGENIGAKLQTDQA  234 (316)
T ss_pred             H---hhCCCc-CceeEEEEeeeeccccchhhchhhhHHHH
Confidence            5   445654 56799999999999988766555443333

Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.

>PRK13665 hypothetical protein; Provisional

Probab=95.57  E-value=0.12  Score=46.12  Aligned_cols=109  Identities=13%  Similarity=0.135  Sum_probs=72.9

Q ss_pred             EEecCCcccccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHH
Q psy9118         114 TDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDEN  193 (293)
Q Consensus       114 ~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~  193 (293)
                      .++-|......+||..+.+.+    +++....+..   ..|...+++.+-.+-++.+..+-+.-+-.+++ ++-+.|+..
T Consensus       131 VI~~P~i~aVAkdGIql~~kA----RVTVRaNi~r---LVGGAgEeTIiARVGEgIVttIGSa~~hk~VL-EnPd~ISk~  202 (316)
T PRK13665        131 VIETPFIAAVAKDGIEVKAKA----RVTVRANIDR---LVGGAGEETIIARVGEGIVSTIGSSESHKEVL-ENPDSISKT  202 (316)
T ss_pred             eecCCcchhhcccCeEEEEEE----EEEeehhHHH---HhCCCcceeeEeeecCceeecccCcchHHHHh-cCHHHHHHH
Confidence            344455566789998887643    3333334433   34554556666666677777777777888999 788888855


Q ss_pred             HHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHHHHH
Q psy9118         194 LKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEA  234 (293)
Q Consensus       194 i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~~~a  234 (293)
                      +   +.+-|+. +.-++|.++.|-|++.-+.+-.-++.-|+
T Consensus       203 V---L~kGLDa-gTAFeIlSIDIADvdVG~NIGA~Lq~dQA  239 (316)
T PRK13665        203 V---LSKGLDA-GTAFEILSIDIADVDVGKNIGAKLQTDQA  239 (316)
T ss_pred             H---HhccCCc-CceeEEEEEeeeccccchhhchhhhHHHH
Confidence            4   4566764 56799999999999988776655543333

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=94.78  E-value=0.44  Score=41.96  Aligned_cols=168  Identities=15%  Similarity=0.107  Sum_probs=73.6

Q ss_pred             cCCcCeEEEEEeEEEEEecCCcccccCCCCe-EEEEEE-EEEEEechhcHHHHHHhhcccccchhH-HHHHHHHHHHHhh
Q psy9118          99 IPFITTFRHVQVTLQTDEVKNVPCGTSGGVM-IYFDRI-EVVNVLSVSSVYDIVKNYTADYDKALI-FNKVHHELNQFCS  175 (293)
Q Consensus        99 ~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~-v~vd~~-~v~~~~d~~~i~~~~~~~~~~~~~~~l-~~~~~~~lr~~~~  175 (293)
                      -|.++-+.++-.++..++..... .+.+..+ ++-|.. +.+.....|++.++..+|..-...... ...+...+++.  
T Consensus        24 ~pG~~~~~P~i~~v~~v~~r~~~-~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~~~i~~~~~~~--  100 (242)
T cd03405          24 EPGLHFKLPFIQQVKKFDKRILT-LDSDPQRVLTKDKKRLIVDAYAKWRITDPLRFYQAVGGEERAAETRLDQIVNSA--  100 (242)
T ss_pred             CCCeeEEcCCcceEEEEcCEEEe-ccCCcceEEccCCcEEEEEEEEEEEEcCHHHHHHHhcChHHHHHHHHHHHHHHH--
Confidence            46555444444445555543222 1212222 233332 223334567777776665432222211 12333333332  


Q ss_pred             cCcHHHHHhh-hHHHH----HHHHHHHHHHHhhcCCCCeEEEEEEecCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9118         176 IHNLHEVYID-LFDQI----DENLKTALQRELNEMAPGLFIQAVRVTKPKIPE-TIRKNYELMEAEKTKLLISIQHQKVV  249 (293)
Q Consensus       176 ~~tl~eil~~-~R~~i----~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~-~v~~a~~~~~ae~~~~~~A~q~~~~~  249 (293)
                         +.++++. .-+++    ...+.+.+.+.+.+   -+.=..+.|.++.+.+ .+-+.+.+...++.   .|++.+...
T Consensus       101 ---lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~---~l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~---~ae~~~~a~  171 (242)
T cd03405         101 ---LRAEFGKRTLIELVSGERGELMEEIRRAVAE---EAKELGIEVVDVRIKRIDLPEEVSESVYRRM---RAERERIAA  171 (242)
T ss_pred             ---HHHHHccCCHHHHHHhHHHHHHHHHHHHHHH---HHHccCcEEEEEEEEeccCCHHHHHHHHHHH---HHHHHHHHH
Confidence               3344421 12233    23455566666652   2333578888888643 22334543222222   244433333


Q ss_pred             HHHHH-----------HHHHHHHHHHHhHHHHHHHHHHHH
Q psy9118         250 EKDAE-----------TERKRAVIEAEKEAQIAKIQYEQK  278 (293)
Q Consensus       250 e~~Ae-----------A~~~~~ii~A~geaea~~i~~~~~  278 (293)
                      +.+|+           |++++.++.|+|+|++..++++.+
T Consensus       172 ~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~ge  211 (242)
T cd03405         172 EFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGD  211 (242)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            33444           444444555555555555555433

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=94.50  E-value=1.7  Score=40.53  Aligned_cols=64  Identities=6%  Similarity=0.094  Sum_probs=37.6

Q ss_pred             EEEecCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9118         213 AVRVTKPKIPE-TIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKV  279 (293)
Q Consensus       213 ~v~I~~i~~p~-~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~~~  279 (293)
                      .+.|.++.+-+ .+-..+.+-..   +..+|++.+.....+||+++++..++|+|++++.++.+++..
T Consensus       202 GI~V~~V~i~~i~~P~~v~~ai~---~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~  266 (334)
T PRK11029        202 GIEVVDVRIKQINLPTEVSDAIY---NRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAER  266 (334)
T ss_pred             CcEEEEEEEEecCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            46666666544 22233332111   122355555555567888888888888888888888777543

>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=93.27  E-value=2.4  Score=35.40  Aligned_cols=53  Identities=11%  Similarity=0.107  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhhcCcHHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCC
Q psy9118         163 FNKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP  219 (293)
Q Consensus       163 ~~~~~~~lr~~~~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i  219 (293)
                      .+.+++.+-..+++.+.+++.+ +.+..+.+++.+.++..|.+   | .|.+|.++++
T Consensus       110 ~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~---~-~V~~VlFt~F  163 (166)
T PRK12785        110 MPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAP---A-QVNAVLFKEV  163 (166)
T ss_pred             chHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCC---C-ceeEEEEEee
Confidence            3556777788889999999985 46899999999999998873   3 3788877764

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=92.95  E-value=0.73  Score=41.28  Aligned_cols=31  Identities=19%  Similarity=0.199  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9118         248 VVEKDAETERKRAVIEAEKEAQIAKIQYEQK  278 (293)
Q Consensus       248 ~~e~~AeA~~~~~ii~A~geaea~~i~~~~~  278 (293)
                      ....+|+|++++.+++|+|++++.++.+++-
T Consensus       216 ~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~  246 (266)
T cd03404         216 RIIQEAEAYKEEVIAEAQGEAARFESLLAEY  246 (266)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            3445777777777777777777777665543

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>TIGR01932 hflC HflC protein

Probab=92.66  E-value=4.3  Score=37.55  Aligned_cols=36  Identities=25%  Similarity=0.187  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9118         242 SIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQ  277 (293)
Q Consensus       242 A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~  277 (293)
                      |++.+.....++++++++..+.|++++++.++.+++
T Consensus       219 aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA  254 (317)
T TIGR01932       219 SEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEA  254 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344456666666666666666666666654

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=92.49  E-value=3.9  Score=33.25  Aligned_cols=52  Identities=17%  Similarity=0.172  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHhhcCcHHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCC
Q psy9118         164 NKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP  219 (293)
Q Consensus       164 ~~~~~~lr~~~~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i  219 (293)
                      +.+++.+-..+++.+.+++-+ +.++.+.+++.+.++..+.+   | .|.+|.++++
T Consensus        87 p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~---g-~V~~Vyft~f  139 (142)
T PRK07718         87 FQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE---G-KVEKVYITSF  139 (142)
T ss_pred             hhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc---C-ceEEEEEEee
Confidence            456778888899999999985 46899999999999998873   4 5778877664

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=92.42  E-value=0.8  Score=41.08  Aligned_cols=31  Identities=3%  Similarity=-0.133  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy9118         246 QKVVEKDAETERKRAVIEAEKEAQIAKIQYE  276 (293)
Q Consensus       246 ~~~~e~~AeA~~~~~ii~A~geaea~~i~~~  276 (293)
                      ++....+|++++++.++.|+|+++......+
T Consensus       181 a~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~  211 (262)
T cd03407         181 AEAKRLQGVGAAEQRQAIADGLRESILSLAD  211 (262)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3334446677777777777777766655543

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]

Probab=92.08  E-value=0.59  Score=38.85  Aligned_cols=55  Identities=16%  Similarity=0.167  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHhhcCcHHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCC
Q psy9118         163 FNKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPK  220 (293)
Q Consensus       163 ~~~~~~~lr~~~~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~  220 (293)
                      .+.+++++...+++.|.+++-+ ..++++..++++.|+..|.  . |-.|.+|..+++.
T Consensus       102 ~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~--~-g~~V~dV~fT~fi  157 (159)
T COG1580         102 KPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILK--E-GQVVKDVLFTNFI  157 (159)
T ss_pred             hHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHh--c-CCeeEEEeeehhh
Confidence            4678899999999999999986 6799999999999999998  3 4488999888764

>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=91.64  E-value=6.9  Score=32.46  Aligned_cols=56  Identities=18%  Similarity=0.143  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhhcCcHHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCC
Q psy9118         164 NKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP  219 (293)
Q Consensus       164 ~~~~~~lr~~~~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i  219 (293)
                      +.+++.+-..+++.+.+++.+ +.+..+.+++.+.++..+......-.|.+|.++++
T Consensus       103 p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f  159 (162)
T PRK07021        103 PEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF  159 (162)
T ss_pred             HHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence            457777888899999999974 46889999999999999873211246778877764

>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []

Probab=89.81  E-value=1.1  Score=33.63  Aligned_cols=53  Identities=11%  Similarity=0.187  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhhcCcHHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCC
Q psy9118         163 FNKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP  219 (293)
Q Consensus       163 ~~~~~~~lr~~~~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i  219 (293)
                      .+.+++++...+++++.+++-+ +.+..+.+++.+.+++.+.+    -.|.+|.++++
T Consensus        43 ~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~----~~V~~V~ft~f   96 (99)
T PF03748_consen   43 MPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGK----GKVKDVYFTDF   96 (99)
T ss_pred             cHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhcc----CcEEEEEEEEE
Confidence            3567888888999999999986 67899999999999999973    23777777654

FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body

>TIGR01933 hflK HflK protein

Probab=88.68  E-value=3.3  Score=36.96  Aligned_cols=81  Identities=15%  Similarity=0.150  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHhhcCCCCeEEEEEEecCCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy9118         192 ENLKTALQRELNEMAPGLFIQAVRVTKPKIPET-IRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQI  270 (293)
Q Consensus       192 ~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~-v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea  270 (293)
                      +.|.+.+.+.+++. ..-.=..+.|.++.+-.- +-+.+...   =++...|++.+.....+|+++++..+.+|+|+|+.
T Consensus       114 ~~i~~~i~~~l~~~-~~~~~~GI~V~~v~I~~i~~p~~v~~a---~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~  189 (261)
T TIGR01933       114 SQIREDTKERLNEI-IDNYDLGITVTDVNFQSARPPEEVKEA---FDDVIIAREDEERYINEAEAYANEVVPKARGDAQR  189 (261)
T ss_pred             HHHHHHHHHHHHHH-HhhhcCCcEEEEEEEEecCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556666666631 111112577788776552 22233222   12222244444443444555555544445554444


Q ss_pred             HHHHHH
Q psy9118         271 AKIQYE  276 (293)
Q Consensus       271 ~~i~~~  276 (293)
                      ..+.++
T Consensus       190 ~~~~Ae  195 (261)
T TIGR01933       190 IIEEAR  195 (261)
T ss_pred             HHHHHH
Confidence            444443

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=87.43  E-value=3.8  Score=39.52  Aligned_cols=81  Identities=15%  Similarity=0.107  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy9118         192 ENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIA  271 (293)
Q Consensus       192 ~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~  271 (293)
                      +.|...+.+.+.+.--.. =..+.|.++.+-+--.-  +.++.+=++...|++.++....+||++++..+.+|+|+|+..
T Consensus       210 ~~I~~~i~~~l~e~l~~y-~~GI~V~~V~I~di~pP--~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~i  286 (419)
T PRK10930        210 TVIRSDTQRELEETIRPY-DMGITLLDVNFQAARPP--EEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRI  286 (419)
T ss_pred             HHHHHHHHHHHHHHHhhc-CCCeEEEEEEEeecCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777777310111 13578888875442211  223333444444666666555677777777666666666554


Q ss_pred             HHHH
Q psy9118         272 KIQY  275 (293)
Q Consensus       272 ~i~~  275 (293)
                      ...+
T Consensus       287 i~~A  290 (419)
T PRK10930        287 LEEA  290 (419)
T ss_pred             HHHH
Confidence            4433

>PTZ00491 major vault protein; Provisional

Probab=85.83  E-value=3.9  Score=42.37  Aligned_cols=37  Identities=27%  Similarity=0.337  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHH
Q psy9118         251 KDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQR  287 (293)
Q Consensus       251 ~~AeA~~~~~ii~A~geaea~~i~~~~~~~e~~~~~~  287 (293)
                      ++|+|.+++..|+++++-+++++.+++...+.+++..
T Consensus       719 a~a~a~aea~~ie~e~~v~~a~lra~a~~i~~~ael~  755 (850)
T PTZ00491        719 AEALAEAEARLIEAEAEVEQAELRAKALRIEAEAELE  755 (850)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHhhhHHHHHhhHHHHH
Confidence            4666666777788888877777777766665555443

>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.76  E-value=11  Score=32.86  Aligned_cols=94  Identities=11%  Similarity=0.141  Sum_probs=59.1

Q ss_pred             ccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHh
Q psy9118         123 GTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQREL  202 (293)
Q Consensus       123 ~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l  202 (293)
                      ...||..+..-    -++.....+.++   .|...++..+...-++.+..+-++..-.+++ ++-+.+++.+.   .+-|
T Consensus       139 vam~gievkak----aritvrani~rl---vggageetviarvgegivstigss~~h~~vl-enpd~isktvl---~kgl  207 (328)
T COG4864         139 VAMNGIEVKAK----ARITVRANIERL---VGGAGEETVIARVGEGIVSTIGSSDEHTKVL-ENPDSISKTVL---EKGL  207 (328)
T ss_pred             eeccceEEEEE----EEEEehhhHHHH---hCCCCchhhhhhhccceeeccCCCcchhhHh-cCccHHHHHHH---HccC
Confidence            34577666542    244444444443   3444456666666666655555566677888 67777776654   3455


Q ss_pred             hcCCCCeEEEEEEecCCCCChHHHHH
Q psy9118         203 NEMAPGLFIQAVRVTKPKIPETIRKN  228 (293)
Q Consensus       203 ~~~~~GI~I~~v~I~~i~~p~~v~~a  228 (293)
                      ++ +..++|.++.|-+++....+-.-
T Consensus       208 d~-gtafeilsidiadvdigkniga~  232 (328)
T COG4864         208 DS-GTAFEILSIDIADVDIGKNIGAK  232 (328)
T ss_pred             CC-CceeEEEEeeeeccccccccccc
Confidence            53 56699999999999988766544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 44.8 bits (105), Expect = 7e-06
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 24/78 (30%)

Query: 222 PETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVI--EAEKE---------AQI 270
           PE+IRK       E+ +  +        E DA ++        +A+K+          Q+
Sbjct: 84  PESIRK-----WREEQRKRLQ-------ELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131

Query: 271 AKIQYEQKVMEQE-SKQR 287
            K +   ++ ++   +Q 
Sbjct: 132 EKNKINNRIADKAFYQQP 149

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 7e-05
 Identities = 53/353 (15%), Positives = 95/353 (26%), Gaps = 111/353 (31%)

Query: 2   FDRGTITAKVL-SSRNRREKEDRIGESQPFQERTLSVQDKIRSGRAMADSLLVGIVSLFS 60
           F+   ++ K+L ++R ++     + +       T    D         +       SL  
Sbjct: 262 FN---LSCKILLTTRFKQ-----VTDFLSAATTTHISLDHHSMTLTPDEVK-----SLLL 308

Query: 61  LLLVFNYSFHKI-EEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV--------- 110
             L  +     +  E            LS I        +     ++HV           
Sbjct: 309 KYL--DCRPQDLPREVLTTNPR----RLSII-AESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 111 ---TLQTDEVK-------------NVPCGTSG---GVMIYFDRIEVVNVL---------- 141
               L+  E +             ++P          +I  D + VVN L          
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 142 --SVSSVYDIVKNY--TADYDKALIFNKVHHEL-------NQFCSIHNLHEVYID--LFD 188
             S  S+  I        + + AL     H  +         F S  +L   Y+D   + 
Sbjct: 422 KESTISIPSIYLELKVKLENEYAL-----HRSIVDHYNIPKTFDS-DDLIPPYLDQYFYS 475

Query: 189 QIDENLKTALQRELNEMAPGL-----FIQA-VRVTKPKIPET----------------IR 226
            I  +LK     E   +   +     F++  +R        +                I 
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535

Query: 227 KN---YELMEAEKTKLLISIQHQKVVEKDAE-------TERKRAVIEAEKEAQ 269
            N   YE +       L  I+   +  K  +        E +    EA K+ Q
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	99.91
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	99.9
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	99.83
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	99.73
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	98.16

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}

Probab=99.91  E-value=6e-24  Score=180.80  Aligned_cols=151  Identities=17%  Similarity=0.162  Sum_probs=128.4

Q ss_pred             CcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHH
Q psy9118         101 FITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLH  180 (293)
Q Consensus       101 ~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~  180 (293)
                      |++++..+|+|+++++++.+.++|+||++|.+++++.|++.||.++.     +...+....+.+.++++||+++|+++++
T Consensus         2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp~~~~-----~~v~~~~~~i~~~~~~~lR~vig~~~l~   76 (188)
T 3bk6_A            2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAV-----TQVKNYIMATSQISQTTLRSVIGQAHLD   76 (188)
T ss_dssp             CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHH-----HSSSCHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred             ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCHHHHH-----HHhcCHHHHHHHHHHHHHHHHHccCCHH
Confidence            57899999999999999888999999999999999888888887664     2222234568899999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9118         181 EVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRA  260 (293)
Q Consensus       181 eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~  260 (293)
                      +++ ++|++|+..+.+.+++.++  +|||+|++|.|++++||+++.+++.+.                  .+||.++++.
T Consensus        77 ell-~~R~~i~~~i~~~l~~~~~--~~GI~v~~v~I~~i~~p~ev~~a~~~~------------------~~Aere~~A~  135 (188)
T 3bk6_A           77 ELL-SERDKLNMQLQRIIDEATD--PWGIKVTAVEIKDVELPAGMQKAMARQ------------------AEAERERRAR  135 (188)
T ss_dssp             HHH-HCHHHHHHHHHHHHHHHTG--GGTEEEEEEEEEEEEEETTHHHHHHHH------------------HHHHHHHHHH
T ss_pred             HHH-hhHHHHHHHHHHHHHHHHH--hcCeEEEEEEEEecCCCHHHHHHHHHH------------------HHHHHHHHHH
Confidence            999 5899999999999999999  889999999999999999999997521                  2455566667


Q ss_pred             HHHHHhHHHHHHHHHHH
Q psy9118         261 VIEAEKEAQIAKIQYEQ  277 (293)
Q Consensus       261 ii~A~geaea~~i~~~~  277 (293)
                      +++|+|+++|+++.+++
T Consensus       136 i~~Aege~~a~~~~a~a  152 (188)
T 3bk6_A          136 ITLAEAERQAAEKLREA  152 (188)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHH
Confidence            77888888877777665

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A

Probab=99.90  E-value=8.4e-24  Score=170.17  Aligned_cols=126  Identities=13%  Similarity=0.141  Sum_probs=100.9

Q ss_pred             EEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhc
Q psy9118          97 AMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSI  176 (293)
Q Consensus        97 ~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~  176 (293)
                      ++.||+++|.++|+|+++++++++.++|+|++.+.+|+++.|++.||.+++     |+..+.+..+..+++++||+++|+
T Consensus         3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp~~~~-----~~v~~~~~~l~~~~~~~lR~vig~   77 (133)
T 4fvg_A            3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAV-----ANITNADSATRLLAQTTLRNALGT   77 (133)
T ss_dssp             -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCHHHHH-----HSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeehHHhH-----hhhhhHHHHHHHHHHHHHHHHhcc
Confidence            678999999999999999999989999999999999999999999988763     344455778999999999999999


Q ss_pred             CcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHH
Q psy9118         177 HNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE  230 (293)
Q Consensus       177 ~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~  230 (293)
                      +++++++ ++|++++..+++.+++.++  +|||+|.+|.|++++||+++.+|+.
T Consensus        78 ~~ldeil-~~r~~i~~~i~~~l~~~~~--~~GI~V~~V~ikdi~~P~~v~~am~  128 (133)
T 4fvg_A           78 KNLSQIL-SDREEIAHHMQSTLDDATD--DWGIKVERVEIKDVKLPVQLQRAMA  128 (133)
T ss_dssp             SCHHHHH-HCHHHHHHHHHHHHHHHHG--GGTEEEEEEEEEEEECCCC------
T ss_pred             ccHHHHH-hhHHHHHHHHHHHHHHHHh--cCCEEEEEEEEEecCCCHHHHHHHH
Confidence            9999999 5899999999999999999  8899999999999999999999974

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1

Probab=99.83  E-value=1.8e-20  Score=152.52  Aligned_cols=127  Identities=9%  Similarity=0.122  Sum_probs=115.0

Q ss_pred             CcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEe-chhcHHHHHHhh-ccc--ccchhHHHHHHHHHHHHhhc
Q psy9118         101 FITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVL-SVSSVYDIVKNY-TAD--YDKALIFNKVHHELNQFCSI  176 (293)
Q Consensus       101 ~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~-d~~~i~~~~~~~-~~~--~~~~~l~~~~~~~lr~~~~~  176 (293)
                      |++++.++|+|+++++++++.+.|+|+.++.+|++++|++. ||.++.....+| +..  ..+..+.+.++++||+++|+
T Consensus         3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~   82 (143)
T 1win_A            3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT   82 (143)
T ss_dssp             CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999999999999987 688887777654 322  23677899999999999999


Q ss_pred             CcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHH
Q psy9118         177 HNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE  230 (293)
Q Consensus       177 ~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~  230 (293)
                      +++++++ ++|++|++.+.+.+.+.++  +|||+|.+|.|++|++|+++.+|+.
T Consensus        83 ~tldeil-s~R~~i~~~v~~~~~~~~~--~~Gi~V~~v~IkdI~~p~~~~~am~  133 (143)
T 1win_A           83 LTVEQIY-QDRDQFAKLVREVAAPDVG--RMGIEILSFTIKDVYDKVDYLSSLG  133 (143)
T ss_dssp             SCHHHHH-HTHHHHHHHHHHHHHHHHT--TTTEEEEEEECCCEECTTCHHHHHC
T ss_pred             CCHHHHH-HHHHHHHHHHHHHHHHHHH--hCCCEEEEEEEEeecChHHHHHHHH
Confidence            9999999 5999999999999999999  8999999999999999999999985

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}

Probab=99.73  E-value=5.6e-18  Score=132.01  Aligned_cols=110  Identities=17%  Similarity=0.154  Sum_probs=98.3

Q ss_pred             EEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhh
Q psy9118         107 HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDL  186 (293)
Q Consensus       107 ~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~  186 (293)
                      .+|+|+++++++.+.+.|+|++++.+++++.|++.||.++..-+     ......|.+.+++++|+++|++++++++ ++
T Consensus         4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp~~~~~~v-----~~~~~~l~~~~~~~lR~vig~~~l~ei~-~~   77 (113)
T 2rpb_A            4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNV-----SDFLMAIVKLAQTNLRAIIGEMELDETL-SG   77 (113)
T ss_dssp             CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESCTTTCTTTT-----THHHHHHHHHHHHHHHHHHTSCCTTHHH-HC
T ss_pred             EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECCHHHHHHhc-----CCHHHHHHHHHHHHHHHHHhcCcHHHHH-hC
Confidence            47899999999989999999999999999888888987764322     2235679999999999999999999999 59


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChH
Q psy9118         187 FDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPET  224 (293)
Q Consensus       187 R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~  224 (293)
                      |+++++.+++.+++.++  +|||+|.+|.|++++||++
T Consensus        78 R~~i~~~i~~~l~~~~~--~~Gi~v~~v~I~~i~~p~e  113 (113)
T 2rpb_A           78 RDIINARLREELDKITD--RWGVKITRVEIQRIDPPKD  113 (113)
T ss_dssp             HHHHHHHHHHHHHHHHG--GGTEECCCEEECCCBCCCC
T ss_pred             HHHHHHHHHHHHHHHHH--hcCeEEEEEEEEEecCCCC
Confidence            99999999999999999  7899999999999999974

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=98.16  E-value=0.00032  Score=69.84  Aligned_cols=151  Identities=8%  Similarity=0.046  Sum_probs=95.5

Q ss_pred             eEEecCCeEEEEEeC--CccccccccCceEEEcCCcCeEEEEEeE---------EEEE--ec------CCcccccCCCCe
Q psy9118          69 FHKIEEGHVGVYFRG--GALLSTISGPGFHAMIPFITTFRHVQVT---------LQTD--EV------KNVPCGTSGGVM  129 (293)
Q Consensus        69 ~~~V~~ge~gVv~~~--Gk~~~~v~~pGlh~~~P~i~~v~~v~~r---------~q~~--~~------~~~~v~T~D~~~  129 (293)
                      .|.||.+...-++.+  |+. +.++||-+.+.-|- +.+..++++         +.++  ..      +-..|-|+|...
T Consensus       459 ~~rvphnaaVqvyDy~~~~~-RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhAr  536 (861)
T 2zuo_A          459 SYRVPHNAAVQVYDYRAKRA-RVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHAR  536 (861)
T ss_dssp             EEECCTTEEEEEECSSSCCE-EEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCE
T ss_pred             EEEcCCCeEEEEEecCCCce-EEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceE
Confidence            357888888888875  443 36889999666553 444444432         2332  11      124678999999


Q ss_pred             EEEEEEEEEEE-e-chhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHH-HHHHHHH---------
Q psy9118         130 IYFDRIEVVNV-L-SVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQI-DENLKTA---------  197 (293)
Q Consensus       130 v~vd~~~v~~~-~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i-~~~i~~~---------  197 (293)
                      +.+.....|++ + |+....+..+-|...+.-.-+=..+.+.+|..+++.+++++. .+...| ...+...         
T Consensus       537 L~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FH-knsa~iir~aVFg~~~~~~~~~~  615 (861)
T 2zuo_A          537 LQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFH-KNSARIIRMAVFGFEMSEDTGPD  615 (861)
T ss_dssp             EEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHH-HHHHHHHHHHSSCCC--------
T ss_pred             EEEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHh-hhHHHHHHHhhcCCCcccccccc
Confidence            98876655665 2 665555555555543333346677888999999999999998 344333 2222110         


Q ss_pred             ------HHHH--hhcCCCCeEEEEEEecCCCCChH
Q psy9118         198 ------LQRE--LNEMAPGLFIQAVRVTKPKIPET  224 (293)
Q Consensus       198 ------l~~~--l~~~~~GI~I~~v~I~~i~~p~~  224 (293)
                            +...  +.  ..|+-|++|.|+.+.+-++
T Consensus       616 ~~~~~~~~~~~~F~--~N~lvitsVDvqsvEpvDq  648 (861)
T 2zuo_A          616 GTLLPKARDQAVFP--QNGLVVSSVDVQSVEPVDQ  648 (861)
T ss_dssp             -----CCCSCEECT--TTCEEEEEEEEEEEEESSH
T ss_pred             cccccCcccceEEc--cCCeEEEEEeeeeecccCH
Confidence                  0001  22  4699999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d1wina_	143	Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.73

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=4.7e-18  Score=136.21  Aligned_cols=126  Identities=10%  Similarity=0.118  Sum_probs=108.7

Q ss_pred             CeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcH-HHHHH-hhcc--cccchhHHHHHHHHHHHHhhcCc
Q psy9118         103 TTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSV-YDIVK-NYTA--DYDKALIFNKVHHELNQFCSIHN  178 (293)
Q Consensus       103 ~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i-~~~~~-~~~~--~~~~~~l~~~~~~~lr~~~~~~t  178 (293)
                      .++.++|+++++++++.+.++|+||.++.+++++.|++.|+.+. ..... +.+.  .+.+..|++.+++++|+++|+++
T Consensus         5 ~s~~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~   84 (143)
T d1wina_           5 SSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLT   84 (143)
T ss_dssp             CCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CceeEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcccc
Confidence            35677899999999998899999999999999988888876554 33332 2222  23467899999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHH
Q psy9118         179 LHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL  231 (293)
Q Consensus       179 l~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~  231 (293)
                      +++++ ++|++|++.+++.+++.+.  +|||+|++|.|+||++|++|.+++.+
T Consensus        85 l~el~-~~R~~i~~~v~~~i~~~l~--~~Gi~v~~v~I~dI~~~~~~~~a~~~  134 (143)
T d1wina_          85 VEQIY-QDRDQFAKLVREVAAPDVG--RMGIEILSFTIKDVYDKVDYLSSLGK  134 (143)
T ss_dssp             HHHHH-HTHHHHHHHHHHHHHHHHT--TTTEEEEEEECCCEECTTCHHHHHCC
T ss_pred             HHHHH-hCHHHHHHHHHHHHHHHHH--HhCeEEEEEEEEecCCcHHHHHHHHH
Confidence            99999 6999999999999999999  89999999999999999999999864