Psyllid ID: psy918

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500----
MGVIEKFMPLPHDEKKRRECLTLSLQTSDCTFATSNIKPLSVVSLPRRMPTLRLVSHEPGRNNIHTGRTQAEIQPRIPMAVTNAVSWPNNNNSILFIMSASALYILDVKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLEIQPRIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAKSQFKRRSTANNVEIVIPVPADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHFGLPSVENEDAEGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW
cccccccccccccHHccccEEEEEEEcccEEEEcccccccEEEEccccccccEEEcccccccccccccccccccccccEEEEccEEEccccccEEEEEEEEEEEEEcccccEEEEEcccccccccHHHHHHHHHHHcccccccccEEEEccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHcccccccccHHHHccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEccccEEEEEEcccccccccccccccEEEEccccccccccccccccccEEEEEcccccEEEEEEEEcccccccEEEEEEEEEEccEEEEEEEEEEEcccccccccEEEEEEcccccccccEEEEEccEEEEEccccEEEEEEccccccccEEEEEEEEccccccccccccccEEEEEEEccccccccEEEEEEEEEccccccccc
ccEEEEcccccccHHHHHHHHHEccccccccEEcccccccEEEccccccccEEEEEcccccccccccccHcEccccccEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHHHHcHHccccccEEEEccEEEEEEEcccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccHHcccEcccccccEEcccEEEEEHHHHHEEEEcccccEEEEEEEEEEEEEEEEccccccEEccccEEEEEccccccccEEEEEccEEEEEEEEcccccccEEEEEcccccEEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEEccccccccEEEEEEEccccccccEEEEcEEEEEEcccccEEEEEEEEcccccEEEEEEEEcccccccccccccccEEEEEEEEEEEcccEEEEEEEEEEccccccccc
mgviekfmplphdekkrrECLTlslqtsdctfatsnikplsvvslprrmptlrlvshepgrnnihtgrtqaeiqpripmavtnavswpnnnnSILFIMSASALYILDVKGKVLISrnyrgdvemgVIEKFMPLLMEkeeegmltpllqtsdctfayiKYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELidfgypqttdsKILQEYITqeghkleiqpripmavtNAVSWRsegikyrkneVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLsgmpelrlglndkvlfestgrgksksveledvkfhqcvrlsrfendrtisfippdgefeLMSYRlnthvkpliWIESVIERFVHSRVEYMIKAKSQFkrrstannveivipvpadadspkfkttigsvkytpeqsaITWTiksfpggkeyLMRAHfglpsvenedaegkppiqvkfeipyfttsgIQVRYLKIIEKsgyqalpw
mgviekfmplphdekKRRECLTLSlqtsdctfatsnikplsvvslprrMPTLRlvshepgrnnihtgrtqaeiqprIPMAVTNAVSWPNNNNSILFIMSASALYILDVKGKVLISRnyrgdvemgVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFKeieeesirDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEghkleiqpripmAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLansngnvlrSEIVGAIKMRVYLSGMPELRLGLNDKVLFEStgrgksksveledvkfhqcvrlsrfendrtisfipPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAksqfkrrstannveivipvpadadspkfKTTIgsvkytpeqsaitWTIKSFPGGKEYLMRAHFGLPSVENEDAEGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW
MGVIEKFMPLPHDEKKRRECLTLSLQTSDCTFATSNIKPLSVVSLPRRMPTLRLVSHEPGRNNIHTGRTQAEIQPRIPMAVTNAVSWPNNNNSILFIMSASALYILDVKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLEIQPRIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAKSQFKRRSTANNVEIVIPVPADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHFGLPSVENEDAEGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW
*******************CLTLSLQTSDCTFATSNIKPLSVVSLP**************************IQPRIPMAVTNAVSWPNNNNSILFIMSASALYILDVKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLEIQPRIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFEST*******VELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAKSQFKRRSTANNVEIVIPVPADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHFGLPS**********PIQVKFEIPYFTTSGIQVRYLKIIEKSGY*****
**VIEKFMPLPHDEKKRRECLTLSLQTSDCTFATSNIKPLSVVSLPRR************************IQPRIPMAVTNAVSWPNNNNSILFIMSASALYILDVKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGH***********VT**VSWRSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDK************SVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAKSQFKRRSTANNVEIVIPVPADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMR******************IQVKFEIPYFTTSGIQVRYLKIIEKS*****PW
MGVIEKFMPLPHDEKKRRECLTLSLQTSDCTFATSNIKPLSVVSLPRRMPTLRLVSHEPGRNNIHTGRTQAEIQPRIPMAVTNAVSWPNNNNSILFIMSASALYILDVKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLEIQPRIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAKSQFKRRSTANNVEIVIPVPADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHFGLPSVENEDAEGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW
*GVIEKFMPLPHDEKKRRECLTLSLQTSDCTFATSNIKPLSVVSLPRRMPTLRLVSHEPGRNNIHTGRTQAEIQPRIPMAVTNAVSWPNNNNSILFIMSASALYILDVKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGH***IQPRIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAKSQFKRRSTANNVEIVIPVPADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHFGLPSVENEDAEGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQ****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGVIEKFMPLPHDEKKRRECLTLSLQTSDCTFATSNIKPLSVVSLPRRMPTLRLVSHEPGRNNIHTGRTQAEIQPRIPMAVTNAVSWPNNNNSILFIMSASALYILDVKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLEIQPRIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAKSQFKRRSTANNVEIVIPVPADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHFGLPSVENEDAEGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query504 2.2.26 [Sep-21-2011]
Q9BXS5423 AP-1 complex subunit mu-1 yes N/A 0.807 0.962 0.840 0.0
Q2KJ81423 AP-1 complex subunit mu-1 yes N/A 0.807 0.962 0.840 0.0
Q32Q06423 AP-1 complex subunit mu-1 yes N/A 0.807 0.962 0.835 0.0
P35585423 AP-1 complex subunit mu-1 yes N/A 0.807 0.962 0.833 0.0
P35602422 AP-1 complex subunit mu-1 yes N/A 0.795 0.950 0.764 0.0
Q3SYW1423 AP-1 complex subunit mu-2 no N/A 0.807 0.962 0.769 0.0
Q9Y6Q5423 AP-1 complex subunit mu-2 no N/A 0.807 0.962 0.757 0.0
Q9WVP1423 AP-1 complex subunit mu-2 no N/A 0.807 0.962 0.759 0.0
Q54HS9428 AP-1 complex subunit mu O yes N/A 0.805 0.948 0.695 1e-172
Q9HFE5426 AP-1 complex subunit mu-1 yes N/A 0.799 0.946 0.618 1e-153
>sp|Q9BXS5|AP1M1_HUMAN AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3 Back     alignment and function desciption
 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/408 (84%), Positives = 376/408 (92%), Gaps = 1/408 (0%)

Query: 98  MSASALYILDVKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYI 157
           MSASA+Y+LD+KGKVLI RNYRGDV+M  +E FMP+LMEKEEEGML+P+L      F +I
Sbjct: 1   MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60

Query: 158 KYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDF 217
           K+NNL++V+T+KKNA ++LVF FL K+V+VF+EYFKE+EEESIRDNFV+IYELLDEL+DF
Sbjct: 61  KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120

Query: 218 GYPQTTDSKILQEYITQEGHKLEI-QPRIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVN 276
           GYPQTTDSKILQEYITQEGHKLE   PR P  VTNAVSWRSEGIKYRKNEVFLDVIESVN
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 180

Query: 277 LLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQ 336
           LL ++NGNVLRSEIVG+IKMRV+LSGMPELRLGLNDKVLF++TGRGKSKSVELEDVKFHQ
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 240

Query: 337 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAKSQ 396
           CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIE+  HSR+EYMIKAKSQ
Sbjct: 241 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMIKAKSQ 300

Query: 397 FKRRSTANNVEIVIPVPADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHF 456
           FKRRSTANNVEI IPVP DADSPKFKTT+GSVK+ PE S I W+IKSFPGGKEYLMRAHF
Sbjct: 301 FKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSIKSFPGGKEYLMRAHF 360

Query: 457 GLPSVENEDAEGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW 504
           GLPSVE ED EGKPPI VKFEIPYFTTSGIQVRYLKIIEKSGYQALPW
Sbjct: 361 GLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW 408
Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
Homo sapiens (taxid: 9606)
>sp|Q2KJ81|AP1M1_BOVIN AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3 Back     alignment and function description
>sp|Q32Q06|AP1M1_RAT AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3 Back     alignment and function description
>sp|P35585|AP1M1_MOUSE AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3 Back     alignment and function description
>sp|P35602|AP1M_CAEEL AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2 Back     alignment and function description
>sp|Q3SYW1|AP1M2_BOVIN AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 PE=1 SV=3 Back     alignment and function description
>sp|Q9Y6Q5|AP1M2_HUMAN AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2 PE=1 SV=4 Back     alignment and function description
>sp|Q9WVP1|AP1M2_MOUSE AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2 PE=1 SV=3 Back     alignment and function description
>sp|Q54HS9|AP1M_DICDI AP-1 complex subunit mu OS=Dictyostelium discoideum GN=apm1 PE=1 SV=1 Back     alignment and function description
>sp|Q9HFE5|AP1M1_SCHPO AP-1 complex subunit mu-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apm1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query504
357605857422 hypothetical protein KGM_02865 [Danaus p 0.702 0.838 0.945 0.0
242006021437 clathrin coat assembly protein ap-1, put 0.706 0.814 0.929 0.0
389608807422 clathrin coat assembly protein ap-1 [Pap 0.702 0.838 0.941 0.0
91093575422 PREDICTED: similar to AGAP011374-PA [Tri 0.702 0.838 0.941 0.0
158297760422 AGAP011374-PA [Anopheles gambiae str. PE 0.702 0.838 0.923 0.0
157126991422 clathrin coat assembly protein ap-1 [Aed 0.702 0.838 0.921 0.0
332374524422 unknown [Dendroctonus ponderosae] 0.702 0.838 0.931 0.0
345498300422 PREDICTED: AP-1 complex subunit mu-1-lik 0.702 0.838 0.921 0.0
328781029422 PREDICTED: AP-1 complex subunit mu-1-lik 0.702 0.838 0.923 0.0
380012610469 PREDICTED: AP-1 complex subunit mu-1-lik 0.708 0.761 0.919 0.0
>gi|357605857|gb|EHJ64804.1| hypothetical protein KGM_02865 [Danaus plexippus] Back     alignment and taxonomy information
 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/407 (94%), Positives = 399/407 (98%)

Query: 98  MSASALYILDVKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYI 157
           MS+SA+YILDVKGKVLISRNYRGDV+MGVI+KFMPLLMEKEEEGMLTPLLQTS+CTFAYI
Sbjct: 1   MSSSAIYILDVKGKVLISRNYRGDVDMGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYI 60

Query: 158 KYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDF 217
           K NNL+IVSTTKKNANIALVFVFL KIV V TEYFKE+EEESIRDNFVVIYEL+DEL+DF
Sbjct: 61  KTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELMDELLDF 120

Query: 218 GYPQTTDSKILQEYITQEGHKLEIQPRIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNL 277
           GYPQTTDSKILQEYITQEGHKLE+QPRIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNL
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLEMQPRIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNL 180

Query: 278 LANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQC 337
           LANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQC
Sbjct: 181 LANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQC 240

Query: 338 VRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAKSQF 397
           VRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIER  HSRVEYMIKAKSQF
Sbjct: 241 VRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQF 300

Query: 398 KRRSTANNVEIVIPVPADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHFG 457
           KRRSTANNVEI+IPVPADADSPKFKTTIGSVKYTPEQ+AITW+IKSFPGGKEYLMRAHFG
Sbjct: 301 KRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLMRAHFG 360

Query: 458 LPSVENEDAEGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW 504
           LPSVE ED +GKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW
Sbjct: 361 LPSVECEDTDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW 407

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242006021|ref|XP_002423855.1| clathrin coat assembly protein ap-1, putative [Pediculus humanus corporis] gi|212507089|gb|EEB11117.1| clathrin coat assembly protein ap-1, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|389608807|dbj|BAM18015.1| clathrin coat assembly protein ap-1 [Papilio xuthus] Back     alignment and taxonomy information
>gi|91093575|ref|XP_968639.1| PREDICTED: similar to AGAP011374-PA [Tribolium castaneum] gi|270015574|gb|EFA12022.1| hypothetical protein TcasGA2_TC001437 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|158297760|ref|XP_317947.4| AGAP011374-PA [Anopheles gambiae str. PEST] gi|170066756|ref|XP_001868211.1| conserved hypothetical protein [Culex quinquefasciatus] gi|157014732|gb|EAA13067.4| AGAP011374-PA [Anopheles gambiae str. PEST] gi|167862954|gb|EDS26337.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157126991|ref|XP_001661031.1| clathrin coat assembly protein ap-1 [Aedes aegypti] gi|108873063|gb|EAT37288.1| AAEL010704-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|332374524|gb|AEE62403.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|345498300|ref|XP_003428199.1| PREDICTED: AP-1 complex subunit mu-1-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|328781029|ref|XP_003249906.1| PREDICTED: AP-1 complex subunit mu-1-like isoform 1 [Apis mellifera] gi|328781031|ref|XP_003249907.1| PREDICTED: AP-1 complex subunit mu-1-like isoform 2 [Apis mellifera] gi|380012608|ref|XP_003690371.1| PREDICTED: AP-1 complex subunit mu-1-like isoform 1 [Apis florea] Back     alignment and taxonomy information
>gi|380012610|ref|XP_003690372.1| PREDICTED: AP-1 complex subunit mu-1-like isoform 2 [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query504
FB|FBgn0024833426 AP-1mu "Adaptor Protein comple 0.807 0.955 0.897 6.1e-197
UNIPROTKB|Q2KJ81423 AP1M1 "AP-1 complex subunit mu 0.807 0.962 0.840 1.5e-184
UNIPROTKB|J9P1I0423 AP1M1 "Uncharacterized protein 0.807 0.962 0.840 1.5e-184
UNIPROTKB|Q9BXS5423 AP1M1 "AP-1 complex subunit mu 0.807 0.962 0.840 1.5e-184
UNIPROTKB|F2Z5I7423 AP1M1 "Uncharacterized protein 0.807 0.962 0.840 1.5e-184
RGD|1307653423 Ap1m1 "adaptor-related protein 0.807 0.962 0.835 4.1e-184
MGI|MGI:102776423 Ap1m1 "adaptor-related protein 0.807 0.962 0.833 5.2e-184
UNIPROTKB|F1NZQ2416 AP1M1 "Uncharacterized protein 0.807 0.978 0.838 6.6e-184
UNIPROTKB|F1PYG5463 AP1M1 "Uncharacterized protein 0.809 0.881 0.814 1.4e-181
UNIPROTKB|Q3SYW1423 AP1M2 "AP-1 complex subunit mu 0.807 0.962 0.769 1.3e-171
FB|FBgn0024833 AP-1mu "Adaptor Protein complex 1, mu subunit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1907 (676.4 bits), Expect = 6.1e-197, P = 6.1e-197
 Identities = 369/411 (89%), Positives = 394/411 (95%)

Query:    98 MSASALYILDVKGKVLISRNYRGD-VEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAY 156
             MS+SA+++LDVKGKVLISRNYRGD ++M VI+KFMPLLME+EEEG++TP+LQT++ TFAY
Sbjct:     1 MSSSAIFVLDVKGKVLISRNYRGDNIDMAVIDKFMPLLMEREEEGLITPILQTAETTFAY 60

Query:   157 IKYNNLFIVSTT--KKNANIALVFVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDEL 214
             IK NNL+IVSTT   KN NIALVFVFL+KI +VF EYFKE+EEESIRDNFV+IYELLDEL
Sbjct:    61 IKTNNLYIVSTTPRNKNVNIALVFVFLHKIAQVFVEYFKELEEESIRDNFVIIYELLDEL 120

Query:   215 IDFGYPQTTDSKILQEYITQEGHKLEIQPRIPMAVTNAVSWRSEGIKYRKNEVFLDVIES 274
             +DFGYPQTTDSKILQEYITQEGHKLE+QPRIP+AVTNAVSWRSEGIKYRKNEVFLDVIES
Sbjct:   121 LDFGYPQTTDSKILQEYITQEGHKLELQPRIPVAVTNAVSWRSEGIKYRKNEVFLDVIES 180

Query:   275 VNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKF 334
             VNLLAN+NGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKF
Sbjct:   181 VNLLANANGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKF 240

Query:   335 HQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAK 394
             HQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIER  HSRVEYMIKAK
Sbjct:   241 HQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAK 300

Query:   395 SQFKRRSTANNVEIVIPVPADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRA 454
             SQFKRRSTANNVEIVIPVPADADSPKFKTTIGS KY PEQ+AI WTIKSFPGGKEYLMRA
Sbjct:   301 SQFKRRSTANNVEIVIPVPADADSPKFKTTIGSCKYAPEQNAIIWTIKSFPGGKEYLMRA 360

Query:   455 HFGLPSVENED-AEGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW 504
             HFGLPSVE+ED  EGKPPIQV+FEIPYFTTSGIQVRYLKIIEKSGYQALPW
Sbjct:   361 HFGLPSVESEDNTEGKPPIQVRFEIPYFTTSGIQVRYLKIIEKSGYQALPW 411
GO:0030135 "coated vesicle" evidence=TAS
GO:0016183 "synaptic vesicle coating" evidence=TAS
GO:0008021 "synaptic vesicle" evidence=TAS
GO:0006901 "vesicle coating" evidence=TAS
GO:0007269 "neurotransmitter secretion" evidence=NAS
GO:0030131 "clathrin adaptor complex" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0030136 "clathrin-coated vesicle" evidence=IDA
GO:0045746 "negative regulation of Notch signaling pathway" evidence=IGI
GO:2001136 "negative regulation of endocytic recycling" evidence=IMP
GO:0033363 "secretory granule organization" evidence=IMP
GO:0035976 "AP1 complex" evidence=IMP;IPI
GO:0048749 "compound eye development" evidence=IMP
GO:0046907 "intracellular transport" evidence=IMP
GO:0008565 "protein transporter activity" evidence=IMP
UNIPROTKB|Q2KJ81 AP1M1 "AP-1 complex subunit mu-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P1I0 AP1M1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BXS5 AP1M1 "AP-1 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5I7 AP1M1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1307653 Ap1m1 "adaptor-related protein complex 1, mu 1 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:102776 Ap1m1 "adaptor-related protein complex AP-1, mu subunit 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZQ2 AP1M1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PYG5 AP1M1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SYW1 AP1M2 "AP-1 complex subunit mu-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P35585AP1M1_MOUSENo assigned EC number0.83330.80750.9621yesN/A
Q54HS9AP1M_DICDINo assigned EC number0.69560.80550.9485yesN/A
Q9WVP1AP1M2_MOUSENo assigned EC number0.75980.80750.9621noN/A
P35602AP1M_CAEELNo assigned EC number0.76410.79560.9502yesN/A
Q32Q06AP1M1_RATNo assigned EC number0.83570.80750.9621yesN/A
Q9Y6Q5AP1M2_HUMANNo assigned EC number0.75730.80750.9621noN/A
Q9BXS5AP1M1_HUMANNo assigned EC number0.84060.80750.9621yesN/A
Q00776AP1M1_YEASTNo assigned EC number0.50.80350.8526yesN/A
Q2KJ81AP1M1_BOVINNo assigned EC number0.84060.80750.9621yesN/A
Q9HFE5AP1M1_SCHPONo assigned EC number0.61890.79960.9460yesN/A
Q3SYW1AP1M2_BOVINNo assigned EC number0.76960.80750.9621noN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query504
cd09258270 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med 0.0
cd09250268 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi 1e-180
cd09259264 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of med 1e-168
cd09251263 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi 1e-104
cd07954239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 4e-86
pfam00928228 pfam00928, Adap_comp_sub, Adaptor complexes medium 6e-83
cd09253271 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medi 2e-68
cd09252248 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi 4e-48
cd09255308 cd09255, AP-like_stonins_MHD, Mu homology domain ( 2e-28
cd09260254 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of med 1e-26
cd09261254 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of med 2e-25
cd09262309 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) 8e-16
cd09263314 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) 7e-14
cd09256271 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a 1e-07
>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information 
 Score =  540 bits (1394), Expect = 0.0
 Identities = 237/256 (92%), Positives = 246/256 (96%)

Query: 249 VTNAVSWRSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRL 308
           VTNAVSWRSEGIKYRKNEVFLDVIESVNLL ++NGNVLRSEIVG+IKMRVYLSGMPELRL
Sbjct: 1   VTNAVSWRSEGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVYLSGMPELRL 60

Query: 309 GLNDKVLFESTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTH 368
           GLNDKVLFE+TGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTH
Sbjct: 61  GLNDKVLFENTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTH 120

Query: 369 VKPLIWIESVIERFVHSRVEYMIKAKSQFKRRSTANNVEIVIPVPADADSPKFKTTIGSV 428
           VKPLIWIESVIER  HSRVEYMIKAKSQFKRRSTANNVEI IPVP DADSPKFKTT+GSV
Sbjct: 121 VKPLIWIESVIERHSHSRVEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSV 180

Query: 429 KYTPEQSAITWTIKSFPGGKEYLMRAHFGLPSVENEDAEGKPPIQVKFEIPYFTTSGIQV 488
           KY PE SAI W+IKSFPGGKEYLMRAHFGLPSVE+E+ EG+PPI VKFEIPYFTTSGIQV
Sbjct: 181 KYVPENSAIVWSIKSFPGGKEYLMRAHFGLPSVESEEKEGRPPISVKFEIPYFTTSGIQV 240

Query: 489 RYLKIIEKSGYQALPW 504
           RYLKIIEKSGYQALPW
Sbjct: 241 RYLKIIEKSGYQALPW 256

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, AP-2, AP-3, and AP-4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This subfamily corresponds to the C-terminal domain of heterotetrameric clathrin-associated adaptor protein complex 1 (AP-1) medium mu1A subunit encoded by ap1m1 gene, which is ubiquitously expressed in all mammalian tissues and cells. AP-1 has been implicated in bidirectional transport between the trans-Golgi network (TGN) and endosomes. It is involved in the formation of clathrin-coated vesicles (CCVs) from the trans-Golgi network (TGN). The ubiquitous AP-1 is recruited to the TGN membrane, as well as to immature secretory granules. Recruitment of AP-1 to the TGN membrane is regulated by a small GTPase, ADP-ribosylation factor 1 (ARF1). Phosphorylation/dephosphorylation events can also regulate the function of AP-1. The membrane-anchored cargo molecules can be linked to the outer lattice of CCVs by AP-1. Those cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-1 mu1A subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Length = 270
>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in epithelial cell-specific clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2 Back     alignment and domain information
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4 Back     alignment and domain information
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins Back     alignment and domain information
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in neuron-specific adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-1 (also called Stoned B-like factor) Back     alignment and domain information
>gnl|CDD|211374 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-2 Back     alignment and domain information
>gnl|CDD|211367 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 504
KOG0938|consensus446 100.0
KOG0937|consensus424 100.0
KOG2740|consensus418 100.0
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 100.0
KOG2635|consensus512 100.0
KOG2677|consensus922 100.0
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 99.93
KOG0938|consensus446 99.84
COG5030152 APS2 Clathrin adaptor complex, small subunit [Intr 99.77
KOG0937|consensus424 99.7
KOG3343|consensus175 99.69
KOG0934|consensus145 99.68
KOG0935|consensus143 99.62
KOG0936|consensus182 99.59
KOG2740|consensus418 99.22
COG5541187 RET3 Vesicle coat complex COPI, zeta subunit [Post 99.2
PF10291257 muHD: Muniscin C-terminal mu homology domain; Inte 98.84
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 95.45
PF15001189 AP-5_subunit_s1: AP-5 complex subunit sigma-1 94.29
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 93.13
PF03164415 Mon1: Trafficking protein Mon1; InterPro: IPR00435 90.89
PF1377483 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3 88.36
KOG0859|consensus217 87.81
PF08923119 MAPKK1_Int: Mitogen-activated protein kinase kinas 83.48
>KOG0938|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.8e-96  Score=705.14  Aligned_cols=404  Identities=42%  Similarity=0.749  Sum_probs=375.9

Q ss_pred             heeeeEEEeCCCCeeeeeecccCcchhHHHHHHHHhhcccccCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCccHHHHH
Q psy918           99 SASALYILDVKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYNNLFIVSTTKKNANIALVF  178 (504)
Q Consensus        99 ~i~~~~i~~~~G~vl~~r~y~~~~~~~~~~~f~~~v~~~~~~~~~~pv~~~~~~~~v~~~~~~ly~v~~~~~~~n~l~~~  178 (504)
                      |++++||+|.+|++|++|.||++..+++.|+|+.++++..  ...+|+..++++.|+|++.++||+|++|.+|+|.++++
T Consensus         1 misglfi~n~rGevlink~fr~dlkrs~~diFRv~vi~n~--d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~   78 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINNL--DVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVF   78 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhcc--ccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhHH
Confidence            5899999999999999999999999999999999999873  46899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHhhHHHHHHHHHHHHhCCcccccCHHHHHHhhhccCccccc---------CCCCC---
Q psy918          179 VFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLEI---------QPRIP---  246 (504)
Q Consensus       179 ~~L~~i~~vl~~y~~~l~e~~i~~n~~~i~~lldEiid~G~p~~t~~~~l~~~i~~~~~~~~~---------~~~~~---  246 (504)
                      +||..+..++..|||+++|+.|++||.+|||+||||+|+|+||+|++++|+.+++.+++..+-         .++++   
T Consensus        79 eFl~kl~avm~aYfgk~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~~Vrs~g~~ls~k~s~~sq~~~~~  158 (446)
T KOG0938|consen   79 EFLYKLDAVMNAYFGKDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQKGVRSMGGVLSSKSSPTSQATELR  158 (446)
T ss_pred             HHHHHHHHHHHHHhcccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhhhhhccccccCCcCCCCccccccc
Confidence            999999999999999999999999999999999999999999999999999999987765431         11122   


Q ss_pred             -cccccccccccCCCccccceEEEEEEEeEEEEEccCCceEEEEEEEEEEEEEEeCCCCeEEEEecCcccccccC-C---
Q psy918          247 -MAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTG-R---  321 (504)
Q Consensus       247 -~~~~~~~~WR~~~~~~~~nEI~vdV~E~v~~~~~~~G~v~~~~V~G~I~~ks~LsG~P~~~l~Ln~~~~~~~~~-~---  321 (504)
                       ...+..++||+.|++|++||+|+||+|++|.+++++|++++++|+|.|.|+++|||||+|++||||.+.++..+ .   
T Consensus       159 ssqv~G~i~WRr~Gi~ykknevfldvvErvNlLmS~~GnVLrs~VsG~V~mk~~LSGmPeckfGlNDkl~~e~kq~esks  238 (446)
T KOG0938|consen  159 SSQVTGKIGWRREGIKYKKNEVFLDVVERVNLLMSSDGNVLRSDVSGTVDMKTHLSGMPECKFGLNDKLGMESKQSESKS  238 (446)
T ss_pred             ccccccccccccccceeccceeEeEehheeeeEEcCCCCEEEeecccEEEEEEeccCCcccccccCcccceeeccccccc
Confidence             23456899999999999999999999999999999999999999999999999999999999999999886321 0   


Q ss_pred             ----------CCCCceeeccccccccccccCcCCCceEEEeCCCCceeEEEEEecCCCCCceEEEEEEEecccEEEEEEE
Q psy918          322 ----------GKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMI  391 (504)
Q Consensus       322 ----------~~~~~i~l~d~~fH~cV~~~~f~~~r~i~F~PPdG~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~le~~l  391 (504)
                                .....+.||||+||+||++++|++++.|+|+||||+|+||+||++.+..+||++.|.+++.+.+++||.+
T Consensus       239 ~~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~ELMkYr~~enInlPFrV~PiV~el~r~kie~ri  318 (446)
T KOG0938|consen  239 DFGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSEHIISFVPPDGEFELMKYRVTENINLPFRVTPIVTELGRTKIEYRI  318 (446)
T ss_pred             cccccCCCcccCCceEEeeccchheeeccccccccceEEEeCCCCceEeEeeeeccCcccceEeeeheecccceeEEEEE
Confidence                      1234589999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeccCCCccccceEEEEecCCCCCCCCeEEeeeeEEEEeCCCcEEEEEeceecCCceEEEEEEEEecCCC-CCCCCCCC
Q psy918          392 KAKSQFKRRSTANNVEIVIPVPADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHFGLPSVE-NEDAEGKP  470 (504)
Q Consensus       392 ~l~~~~~~~~~~~~v~I~iP~P~~~~~~~~~~s~G~~~~~~~~~~lvW~I~k~~g~~~~~l~~~~~l~s~~-~~~~~~~~  470 (504)
                      ++++.|+++..+.+|.++||+|.++..+++.++.|+|+|.+++++++|+|+|++|.+|.+|+|++++.+.. +...|.+|
T Consensus       319 ~iks~f~~kl~a~~v~~rIPvP~ntv~~n~~v~~Gkaky~psen~ivWki~kf~G~tE~tlsAevels~Tt~nkq~WtrP  398 (446)
T KOG0938|consen  319 TIKSLFPPKLLAKDVVVRIPVPPNTVKCNISVSNGKAKYVPSENAIVWKINKFNGLTESTLSAEVELSDTTQNKQQWTRP  398 (446)
T ss_pred             EEeccCCchhhhcceEEEecCCCccccceeEEecCccccCcccceEEEEecccCCcccceeEEEEEeccCccccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999998765 44678999


Q ss_pred             CEEEEEEECCccccceEEEEEEeee-cCCCcccCC
Q psy918          471 PIQVKFEIPYFTTSGIQVRYLKIIE-KSGYQALPW  504 (504)
Q Consensus       471 pi~v~F~ip~~t~SGl~V~~l~v~~-~~~y~~~~w  504 (504)
                      ||+++|++|||+.|||.||||+|.| +++|++.||
T Consensus       399 PIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~vkW  433 (446)
T KOG0938|consen  399 PISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAVKW  433 (446)
T ss_pred             CceeEEeeeeecCCceEEEEEEEecccCCCceEEE
Confidence            9999999999999999999999999 478999999

>KOG0937|consensus Back     alignment and domain information
>KOG2740|consensus Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2635|consensus Back     alignment and domain information
>KOG2677|consensus Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0938|consensus Back     alignment and domain information
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0937|consensus Back     alignment and domain information
>KOG3343|consensus Back     alignment and domain information
>KOG0934|consensus Back     alignment and domain information
>KOG0935|consensus Back     alignment and domain information
>KOG0936|consensus Back     alignment and domain information
>KOG2740|consensus Back     alignment and domain information
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1 Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain Back     alignment and domain information
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D Back     alignment and domain information
>KOG0859|consensus Back     alignment and domain information
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query504
1w63_M423 Ap1 Clathrin Adaptor Core Length = 423 0.0
4en2_M266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-134
4emz_A266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-130
2bp5_M435 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 3e-89
2xa7_M446 Ap2 Clathrin Adaptor Core In Active Complex With Ca 6e-88
1bw8_A321 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 6e-59
1i31_A314 Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, 7e-59
2pr9_A299 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 6e-55
1bxx_A285 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 9e-55
1h6e_A288 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-52
3ml6_A385 A Complex Between Dishevlled2 And Clathrin Adaptor 1e-48
4ikn_A261 Crystal Structure Of Adaptor Protein Complex 3 (ap- 2e-24
3l81_A301 Crystal Structure Of Adaptor Protein Complex 4 (Ap- 7e-24
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core Length = 423 Back     alignment and structure 
Iteration: 1

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/408 (82%), Positives = 376/408 (92%), Gaps = 1/408 (0%)
Query: 98  MSASALYILDVKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYI 157
           MSASA+Y+LD+KGKVLI RNYRGDV+M  +E FMP+LMEKEEEGML+P+L      F +I
Sbjct: 1   MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 158 KYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDF 217
           K+NNL++V+T+KKNA ++LVF FL K+V+VF+EYFKE+EEESIRDNFV+IYELLDEL+DF
Sbjct: 61  KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 218 GYPQTTDSKILQEYITQEGHKLEI-QPRIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVN 276
           GYPQTTDSKILQE+ITQEGHKLE   PR P  VTNAVSWRSEGIKYRKNEVFLDVIE+VN
Sbjct: 121 GYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVN 180
Query: 277 LLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQ 336
           LL ++NGNVLRSEIVG+IKMRV+LSGMPELRLGLNDKVLF++TGRGKSKSVELEDVKFHQ
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 240
Query: 337 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAKSQ 396
           CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIE+  HSR+EYM+KAKSQ
Sbjct: 241 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQ 300
Query: 397 FKRRSTANNVEIVIPVPADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHF 456
           FKRRSTANNVEI IPVP DADSPKFKTT+GSVK+ PE S I W++KSFPGGKEYLMRAHF
Sbjct: 301 FKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHF 360
Query: 457 GLPSVENEDAEGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW 504
           GLPSVE ED EGKPPI VKFEIPYFTTSGIQVRYLKIIEKSGYQA+PW
Sbjct: 361 GLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQAIPW 408
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435 Back     alignment and structure
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446 Back     alignment and structure
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321 Back     alignment and structure
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314 Back     alignment and structure
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299 Back     alignment and structure
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285 Back     alignment and structure
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288 Back     alignment and structure
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385 Back     alignment and structure
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a Subunit C- Terminal Domain, In Complex With A Sorting Peptide From Tgn38 Length = 261 Back     alignment and structure
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4 Su Terminal Domain, In Complex With A Sorting Peptide From The Precursor Protein (App) Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query504
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 1e-135
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 1e-125
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 1e-95
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 7e-93
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 8e-91
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 3e-85
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 4e-33
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 5e-28
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 2e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
 Score =  397 bits (1020), Expect = e-135
 Identities = 337/408 (82%), Positives = 375/408 (91%), Gaps = 1/408 (0%)

Query: 98  MSASALYILDVKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYI 157
           MSASA+Y+LD+KGKVLI RNYRGDV+M  +E FMP+LMEKEEEGML+P+L      F +I
Sbjct: 1   MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60

Query: 158 KYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDF 217
           K+NNL++V+T+KKNA ++LVF FL K+V+VF+EYFKE+EEESIRDNFV+IYELLDEL+DF
Sbjct: 61  KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120

Query: 218 GYPQTTDSKILQEYITQEGHKLEIQPRIPMA-VTNAVSWRSEGIKYRKNEVFLDVIESVN 276
           GYPQTTDSKILQE+ITQEGHKLE     P A VTNAVSWRSEGIKYRKNEVFLDVIE+VN
Sbjct: 121 GYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVN 180

Query: 277 LLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQ 336
           LL ++NGNVLRSEIVG+IKMRV+LSGMPELRLGLNDKVLF++TGRGKSKSVELEDVKFHQ
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 240

Query: 337 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAKSQ 396
           CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIE+  HSR+EYM+KAKSQ
Sbjct: 241 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQ 300

Query: 397 FKRRSTANNVEIVIPVPADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHF 456
           FKRRSTANNVEI IPVP DADSPKFKTT+GSVK+ PE S I W++KSFPGGKEYLMRAHF
Sbjct: 301 FKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHF 360

Query: 457 GLPSVENEDAEGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW 504
           GLPSVE ED EGKPPI VKFEIPYFTTSGIQVRYLKIIEKSGYQA+PW
Sbjct: 361 GLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQAIPW 408
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142 Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query504
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 100.0
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 100.0
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 100.0
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 100.0
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 100.0
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 100.0
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 99.96
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 99.96
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 99.95
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 99.4
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 99.37
3g9h_A328 Suppressor of yeast profilin deletion; SYP1, MU, a 98.71
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 97.95
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 97.76
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 97.6
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 97.03
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 95.74
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 95.58
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 92.4
4afi_A173 AP-3 complex subunit delta-1, vesicle-associated p 91.81
4b93_A189 Vesicle-associated membrane protein 7; endocytosis 90.38
2nut_C196 Vesicle-trafficking protein SEC22B; human copii SE 89.74
2vx8_A169 Nucleoporin-like protein RIP, vesicle-associated m 89.21
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
Probab=100.00  E-value=1.5e-90  Score=730.52  Aligned_cols=407  Identities=83%  Similarity=1.300  Sum_probs=356.4

Q ss_pred             hheeeeEEEeCCCCeeeeeecccCcchhHHHHHHHHhhcccccCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCccHHHH
Q psy918           98 MSASALYILDVKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYNNLFIVSTTKKNANIALV  177 (504)
Q Consensus        98 v~i~~~~i~~~~G~vl~~r~y~~~~~~~~~~~f~~~v~~~~~~~~~~pv~~~~~~~~v~~~~~~ly~v~~~~~~~n~l~~  177 (504)
                      ||+++++|+|.+|+++++|+|+++.+++.++.|.+++..+.+.+.++|+++.++++|+|+++++|||+|+++.++||+++
T Consensus         1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~   80 (423)
T 1w63_M            1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV   80 (423)
T ss_dssp             -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred             CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence            68999999999999999999999888888999999988653223689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccHHHHHhhHHHHHHHHHHHHhCCcccccCHHHHHHhhhccCcccccCC-CCCcccccccccc
Q psy918          178 FVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLEIQP-RIPMAVTNAVSWR  256 (504)
Q Consensus       178 ~~~L~~i~~vl~~y~~~l~e~~i~~n~~~i~~lldEiid~G~p~~t~~~~l~~~i~~~~~~~~~~~-~~~~~~~~~~~WR  256 (504)
                      ++|||+|+++|++|||.++|++|++||+.||++||||+|+|+|++||++.|+++|.++++.++.++ +++++.++++|||
T Consensus        81 le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~i~wr  160 (423)
T 1w63_M           81 FSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSWR  160 (423)
T ss_dssp             HHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCCCC-----------CCSS
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCccccccccCCcccccCCCCcc
Confidence            999999999999999999999999999999999999999999999999999999999998753222 3445567789999


Q ss_pred             cCCCccccceEEEEEEEeEEEEEccCCceEEEEEEEEEEEEEEeCCCCeEEEEecCcccccccCCCCCCceeeccccccc
Q psy918          257 SEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQ  336 (504)
Q Consensus       257 ~~~~~~~~nEI~vdV~E~v~~~~~~~G~v~~~~V~G~I~~ks~LsG~P~~~l~Ln~~~~~~~~~~~~~~~i~l~d~~fH~  336 (504)
                      +.|++|++|||||||+|+|+++++++|.+++++|.|.|.|+|+|+|+|+|+|+||++..++..+++...++.|+||+|||
T Consensus       161 ~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~~~~~~v~l~d~~fHp  240 (423)
T 1w63_M          161 SEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ  240 (423)
T ss_dssp             CSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC-------------CEEEEEECT
T ss_pred             ccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccccccCceEcccccccc
Confidence            99999999999999999999999999999999999999999999999999999999887765444445678899999999


Q ss_pred             cccccCcCCCceEEEeCCCCceeEEEEEecCCCCCceEEEEEEEecccEEEEEEEEeeccCCCccccceEEEEecCCCCC
Q psy918          337 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAKSQFKRRSTANNVEIVIPVPADA  416 (504)
Q Consensus       337 cV~~~~f~~~r~i~F~PPdG~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~le~~l~l~~~~~~~~~~~~v~I~iP~P~~~  416 (504)
                      ||++++|+++|+|+|+||||+|+||+||++.+..||+++.++++..+++++||+++++++|+++..+++|.|+||+|+++
T Consensus       241 cV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~~~  320 (423)
T 1w63_M          241 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDA  320 (423)
T ss_dssp             TEEESSSSSCCEEEECCCSEEEEEEEEEEECCCCCTTCCEEEEEEETTTEEEEEEEEECCSCTTSEEESCEEEEECCTTC
T ss_pred             cccHHHhCCCCeEEEECCCCcEEEEEEEecCCcCCCEEEEEEEEecCCCEEEEEEEEcccCCCcceeeEEEEEEeCCCCc
Confidence            99999999999999999999999999999988889999999998766679999999999999888899999999999999


Q ss_pred             CCCeEEeeeeEEEEeCCCcEEEEEeceecCCceEEEEEEEEecCCCCCCCCCCCCEEEEEEECCccccceEEEEEEeeec
Q psy918          417 DSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHFGLPSVENEDAEGKPPIQVKFEIPYFTTSGIQVRYLKIIEK  496 (504)
Q Consensus       417 ~~~~~~~s~G~~~~~~~~~~lvW~I~k~~g~~~~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip~~t~SGl~V~~l~v~~~  496 (504)
                      .+++++++.|+++|++++++++|+|++++|+++++++|++++++......+.++||+|+|++|++++|||+|++|+|.++
T Consensus       321 ~~~~~~~~~G~~~y~~~~~~l~W~I~~i~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~~~t~Sgl~V~~l~v~~~  400 (423)
T 1w63_M          321 DSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEK  400 (423)
T ss_dssp             CCCEEEESSSEEEEETGGGEEEEECSEEETTCEEEEEEEEEC----------CCCEEEEBCCSSCCTTCCCEEEEEEECS
T ss_pred             ccceEEecCccEEEecCCCEEEEEeCcCCCCCcEEEEEEEEccCCCcccccCCCcEEEEEEECCEeCCCCEEEEEEeEcc
Confidence            99999999999999999999999999999999999999999976432345779999999999999999999999999997


Q ss_pred             CCCcccCC
Q psy918          497 SGYQALPW  504 (504)
Q Consensus       497 ~~y~~~~w  504 (504)
                      ++|+|+||
T Consensus       401 ~~y~~~kw  408 (423)
T 1w63_M          401 SGYQAIPW  408 (423)
T ss_dssp             SCCCCEEE
T ss_pred             CCCCCcCc
Confidence            79999999
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Back     alignment and structure
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A Back     alignment and structure
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Back     alignment and structure
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 504
d2pr9a1277 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s 6e-94
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 3e-42
d2vgls_142 d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem 7e-26
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  284 bits (728), Expect = 6e-94
 Identities = 106/264 (40%), Positives = 154/264 (58%), Gaps = 13/264 (4%)

Query: 253 VSWRSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLND 312
           + WR EGIKYR+NE+FLDV+ESVNLL +  G VL + + G + M+ YLSGMPE + G+ND
Sbjct: 1   IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60

Query: 313 KVLFESTGRG--------KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYR 364
           K++ E  G+G          +S+ ++D  FHQCVRLS+F+++R+ISFIPPDGEFELM YR
Sbjct: 61  KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 120

Query: 365 LNTHVKPLIWIESVIERFVHSRVEYMIKAKSQFKRRSTANNVEIVIPVPADADSPKFKTT 424
               +     +  ++     +++E  +  KS FK    A  +E+ IP P +    +    
Sbjct: 121 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICM 180

Query: 425 IGSVKYTPEQSAITWTIKSFPGGKEYLMRAHFGLPSVENEDAEGKPPIQVKFEIPYFTTS 484
            G  KY   ++AI W IK   G KE  + A   L    ++    +PPI + FE+P F  S
Sbjct: 181 KGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP-FAPS 239

Query: 485 GIQVRYLKIIEK----SGYQALPW 504
           G++VRYLK+ E     S +  + W
Sbjct: 240 GLKVRYLKVFEPKLNYSDHDVIKW 263

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query504
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 100.0
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 99.97
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 99.94
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 98.36
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 97.37
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 96.54
d3cpta1116 MEK binding partner 1, MP1 {Human (Homo sapiens) [ 90.93
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.8e-58  Score=456.82  Aligned_cols=251  Identities=41%  Similarity=0.799  Sum_probs=222.6

Q ss_pred             cccccCCCccccceEEEEEEEeEEEEEccCCceEEEEEEEEEEEEEEeCCCCeEEEEecCcccccccC--------CCCC
Q psy918          253 VSWRSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTG--------RGKS  324 (504)
Q Consensus       253 ~~WR~~~~~~~~nEI~vdV~E~v~~~~~~~G~v~~~~V~G~I~~ks~LsG~P~~~l~Ln~~~~~~~~~--------~~~~  324 (504)
                      +|||+.|++|++|||||||+|+++++++++|.++.++|+|+|.|+|+|+|+|+|+|+||++..++...        ....
T Consensus         1 i~WR~~~i~y~~NEi~vDV~E~i~~~~~~~G~~~~~~V~G~I~~~s~LsG~P~~~l~Ln~~~~~~~~~~~~~~~~~~~~~   80 (277)
T d2pr9a1           1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK   80 (277)
T ss_dssp             CTTSCSCCCCSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSSCEEEEEESBC------------------C
T ss_pred             CCccCCCCcccCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEecCCCCeEEEEecchhhccccccccccccccccc
Confidence            58999999999999999999999999999999999999999999999999999999999987664431        1235


Q ss_pred             CceeeccccccccccccCcCCCceEEEeCCCCceeEEEEEecCCCCCceEEEEEEEecccEEEEEEEEeeccCCCccccc
Q psy918          325 KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAKSQFKRRSTAN  404 (504)
Q Consensus       325 ~~i~l~d~~fH~cV~~~~f~~~r~i~F~PPdG~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~le~~l~l~~~~~~~~~~~  404 (504)
                      .++.|+||+||+||+++.|+++|+|+|+||||+|+||+||++.+..+||.+.+++...+..++++.++++++++.+..++
T Consensus        81 ~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Y~~~~~~~~P~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~~  160 (277)
T d2pr9a1          81 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQ  160 (277)
T ss_dssp             CCBCCSEEEECTTSBCC-----CCEEECCCSEEEEEEEEEECSSCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEE
T ss_pred             CceEccceeeeeccccccccccceEeecCCCCcEEEEEEEcCCCcCCCcEEEEEEEeccCcEEEEEEEEEeccCCCeeee
Confidence            68899999999999999999999999999999999999999988889999999988777778999999999999888999


Q ss_pred             eEEEEecCCCCCCCCeEEeeeeEEEEeCCCcEEEEEeceecCCceEEEEEEEEecCCCCCCCCCCCCEEEEEEECCcccc
Q psy918          405 NVEIVIPVPADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHFGLPSVENEDAEGKPPIQVKFEIPYFTTS  484 (504)
Q Consensus       405 ~v~I~iP~P~~~~~~~~~~s~G~~~~~~~~~~lvW~I~k~~g~~~~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip~~t~S  484 (504)
                      +|.|+||+|.++..++++++.|+++|+.++++++|+|++++++++++|+|++++.+......+.++|++|+|++| +++|
T Consensus       161 ~v~I~iP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~k~~~~~~~~l~~~~~~~~~~~~~~~~~~pi~v~F~ip-~t~S  239 (277)
T d2pr9a1         161 KIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP-FAPS  239 (277)
T ss_dssp             EEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEEETTCEEEEEEEEEECCCCSSSCCCCCCEEEEEEES-SCTT
T ss_pred             EEEEEeeCCCcccCceEEecCceEEEeccCCEEEEecccccCCccceEEEEEEeccCCCCccccCCcEEEEEEec-cccc
Confidence            999999999998888999999999999999999999999999999999999999876655667789999999999 8999


Q ss_pred             ceEEEEEEeeecC----CCcccCC
Q psy918          485 GIQVRYLKIIEKS----GYQALPW  504 (504)
Q Consensus       485 Gl~V~~l~v~~~~----~y~~~~w  504 (504)
                      ||+|++|+|.++.    +|+++||
T Consensus       240 gl~V~~l~v~~~~~~~~~~~~~k~  263 (277)
T d2pr9a1         240 GLKVRYLKVFEPKLNYSDHDVIKW  263 (277)
T ss_dssp             CCCEEEEEEECSSSSCCGGGSEEE
T ss_pred             ceEEEEEEEeccccCCCCCCCCCC
Confidence            9999999998753    4999998
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure