Psyllid ID: psy9323

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
MSVMPTNANLKQTSTTSLILSDLLSNHTLTAAIAPTLRKPNASIYFTNGSVFNYLLTEANATSGVISNDSYFPLYDYDERSFALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLFR
ccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHcccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEccEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
msvmptnanlkqtSTTSLILSDLlsnhtltaaiaptlrkpnasiyftnGSVFNYLLTEAnatsgvisndsyfplydydERSFALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAhqlfrshnpnscifVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLFR
msvmptnanlkqtSTTSLILSDLLSNHTLTAAIAPTLRKPNASIYFTNGSVFNYLLTEANATSGVISNDSYFPLYDYDERSFALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLFR
MSVMPTNANLKQtsttslilsdllsNHTLTAAIAPTLRKPNASIYFTNGSVFNYLLTEANATSGVISNDSYFPLYDYDERSFAlsllitlkillmlfiiVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLFR
****************SLILSDLLSNHTLTAAIAPTLRKPNASIYFTNGSVFNYLLTEANATSGVISNDSYFPLYDYDERSFALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKE**********
*********LKQTSTTSLILSDLLSNHT****************YFTNGSVFNYLLTE*****************DYDERSFALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQE*****
************TSTTSLILSDLLSNHTLTAAIAPTLRKPNASIYFTNGSVFNYLLTEANATSGVISNDSYFPLYDYDERSFALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLFR
*********LKQTSTTSLILSDLLSNHTLTAAIAPTLRKPNASIYFTNGSVFNYLLTEANATS****************RSFALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEH****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
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MSVMPTNANLKQTSTTSLILSDLLSNHTLTAAIAPTLRKPNASIYFTNGSVFNYLLTEANATSGVISNDSYFPLYDYDERSFALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLFR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query289 2.2.26 [Sep-21-2011]
Q9VCZ3 508 Octopamine receptor beta- yes N/A 0.702 0.399 0.665 4e-77
Q4LBB9 536 Octopamine receptor beta- no N/A 0.865 0.466 0.548 5e-72
Q4LBB6 1256 Octopamine receptor beta- no N/A 0.927 0.213 0.517 1e-70
Q9TST6 474 Beta-1 adrenergic recepto N/A N/A 0.788 0.481 0.381 1e-41
P79148 473 Beta-1 adrenergic recepto yes N/A 0.788 0.482 0.377 5e-41
P07700 483 Beta-1 adrenergic recepto yes N/A 0.681 0.407 0.404 9e-41
Q28927 467 Beta-1 adrenergic recepto N/A N/A 0.660 0.408 0.401 2e-40
Q9TT96 467 Beta-1 adrenergic recepto yes N/A 0.768 0.475 0.352 2e-40
P47899 480 Beta-1 adrenergic recepto yes N/A 0.768 0.462 0.360 3e-40
P08588 477 Beta-1 adrenergic recepto yes N/A 0.660 0.400 0.401 3e-40
>sp|Q9VCZ3|OCTB1_DROME Octopamine receptor beta-1R OS=Drosophila melanogaster GN=oa2 PE=2 SV=1 Back     alignment and function desciption
 Score =  288 bits (736), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 135/203 (66%), Positives = 166/203 (81%)

Query: 87  LITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNL 146
           L+ +K  ++ FII++AI GN+LVIVSVMRHRKLR+ITNYFVVSLA ADMLVA  AM FN 
Sbjct: 106 LVFVKCFIIGFIILAAILGNMLVIVSVMRHRKLRIITNYFVVSLAVADMLVALCAMTFNA 165

Query: 147 SVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLL 206
           SV I  +W+FG  MCD+WNS DVYFS+ASI+HLCCISVDRYYAIVQPLDY LIMT+ R+ 
Sbjct: 166 SVMISGKWMFGSVMCDMWNSFDVYFSTASIMHLCCISVDRYYAIVQPLDYPLIMTQRRVF 225

Query: 207 IMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWIPG 266
           IML +VWLSPAL+SFLPI  GWYTT  +  +   NP+ C F VN+ Y +VSS +SFWIPG
Sbjct: 226 IMLLMVWLSPALLSFLPICSGWYTTTENYKYLKSNPHICEFKVNKAYAIVSSSMSFWIPG 285

Query: 267 VIMIYMYYQIYKEADRQEHMLFR 289
           ++M+ MYY+IY+EADRQE +++R
Sbjct: 286 IVMLSMYYRIYQEADRQERLVYR 308
Receptor for octopamine. Octopamine (OA) is a neurotransmitter, neurohormone, and neuromodulator in invertebrates. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase. Octopamine does not cause Ca(2+) release in oa2-expressing cells.
Drosophila melanogaster (taxid: 7227)
>sp|Q4LBB9|OCTB2_DROME Octopamine receptor beta-2R OS=Drosophila melanogaster GN=Octbeta2R PE=2 SV=2 Back     alignment and function description
>sp|Q4LBB6|OCTB3_DROME Octopamine receptor beta-3R OS=Drosophila melanogaster GN=Octbeta3R PE=2 SV=4 Back     alignment and function description
>sp|Q9TST6|ADRB1_FELCA Beta-1 adrenergic receptor OS=Felis catus GN=ADRB1 PE=3 SV=1 Back     alignment and function description
>sp|P79148|ADRB1_CANFA Beta-1 adrenergic receptor OS=Canis familiaris GN=ADRB1 PE=3 SV=1 Back     alignment and function description
>sp|P07700|ADRB1_MELGA Beta-1 adrenergic receptor OS=Meleagris gallopavo GN=ADRB1 PE=1 SV=1 Back     alignment and function description
>sp|Q28927|ADRB1_SHEEP Beta-1 adrenergic receptor OS=Ovis aries GN=ADRB1 PE=2 SV=2 Back     alignment and function description
>sp|Q9TT96|ADRB1_BOVIN Beta-1 adrenergic receptor OS=Bos taurus GN=ADRB1 PE=3 SV=2 Back     alignment and function description
>sp|P47899|ADRB1_MACMU Beta-1 adrenergic receptor OS=Macaca mulatta GN=ADRB1 PE=3 SV=1 Back     alignment and function description
>sp|P08588|ADRB1_HUMAN Beta-1 adrenergic receptor OS=Homo sapiens GN=ADRB1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query289
91090658 527 PREDICTED: similar to GA19956-PA [Tribol 0.840 0.461 0.650 2e-84
350413453 427 PREDICTED: octopamine receptor beta-1R-l 0.771 0.522 0.681 5e-84
383862143 428 PREDICTED: octopamine receptor beta-1R-l 0.754 0.509 0.697 8e-84
332025956 418 Octopamine receptor beta-1R [Acromyrmex 0.705 0.488 0.735 1e-83
380012226 474 PREDICTED: octopamine receptor beta-1R-l 0.747 0.455 0.700 2e-83
66548399 428 PREDICTED: octopamine receptor beta-1R [ 0.747 0.504 0.700 5e-83
375364606282 beta adrenergic-like octopamine receptor 0.702 0.719 0.789 1e-82
307210570253 Octopamine receptor beta-1R [Harpegnatho 0.854 0.976 0.596 1e-82
307171444242 Octopamine receptor beta-1R [Camponotus 0.795 0.950 0.640 3e-81
340717342335 PREDICTED: octopamine receptor beta-1R-l 0.771 0.665 0.681 9e-81
>gi|91090658|ref|XP_974265.1| PREDICTED: similar to GA19956-PA [Tribolium castaneum] gi|270014323|gb|EFA10771.1| hypothetical protein TcasGA2_TC012600 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 160/246 (65%), Positives = 189/246 (76%), Gaps = 3/246 (1%)

Query: 47  TNGSVFNYLLTEANATSGV-ISNDSYFPLYD-YDERSFALSLLITLKILLMLFIIVSAIF 104
           T  S+ N      + +  + ISN+  + L   + + S+ L  L+T+K  +M  II++A+F
Sbjct: 87  TQASLKNSTDNPNDTSEAIHISNNYAYSLQPTWAKNSWLLCFLLTVKTTVMALIIIAALF 146

Query: 105 GNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFN-RWLFGYFMCDV 163
           GNLLVIVSVMRHRKLRVITNYFVVSLA ADMLVA  AM FN SVEI   RW+FGYFMCDV
Sbjct: 147 GNLLVIVSVMRHRKLRVITNYFVVSLALADMLVAIWAMCFNFSVEITGGRWIFGYFMCDV 206

Query: 164 WNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLP 223
           WNSLDVYFS+ASILHLCCISVDRYYAIVQPLDY LIMT +RL +ML +VW SPALVSFLP
Sbjct: 207 WNSLDVYFSTASILHLCCISVDRYYAIVQPLDYPLIMTNARLAVMLAVVWCSPALVSFLP 266

Query: 224 IFLGWYTTHAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQ 283
           IF+ WYTT  H  FR  +P  C F VNR Y V+SS VSFW+PG++MI+MYY+IY EADRQ
Sbjct: 267 IFMEWYTTEEHLQFRRKHPYICTFTVNRTYSVISSSVSFWVPGMVMIFMYYRIYVEADRQ 326

Query: 284 EHMLFR 289
           E ML+R
Sbjct: 327 ERMLYR 332

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350413453|ref|XP_003489997.1| PREDICTED: octopamine receptor beta-1R-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383862143|ref|XP_003706543.1| PREDICTED: octopamine receptor beta-1R-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|332025956|gb|EGI66112.1| Octopamine receptor beta-1R [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|380012226|ref|XP_003690187.1| PREDICTED: octopamine receptor beta-1R-like [Apis florea] Back     alignment and taxonomy information
>gi|66548399|ref|XP_397139.2| PREDICTED: octopamine receptor beta-1R [Apis mellifera] Back     alignment and taxonomy information
>gi|375364606|gb|AFA55165.1| beta adrenergic-like octopamine receptor 1, partial [Mythimna unipuncta] Back     alignment and taxonomy information
>gi|307210570|gb|EFN87040.1| Octopamine receptor beta-1R [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307171444|gb|EFN63288.1| Octopamine receptor beta-1R [Camponotus floridanus] Back     alignment and taxonomy information
>gi|340717342|ref|XP_003397143.1| PREDICTED: octopamine receptor beta-1R-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query289
FB|FBgn0038980 508 oa2 "octopamine receptor 2" [D 0.657 0.374 0.684 3e-69
FB|FBgn0038063 536 Octbeta2R "Octbeta2R" [Drosoph 0.650 0.350 0.664 2.3e-64
FB|FBgn0250910 1256 Octbeta3R "Octbeta3R" [Drosoph 0.892 0.205 0.518 2.9e-62
UNIPROTKB|F1RLA8 366 HTR4 "5-hydroxytryptamine rece 0.487 0.385 0.503 1.5e-39
UNIPROTKB|F1RLB0 402 HTR4 "5-hydroxytryptamine rece 0.487 0.350 0.503 1.5e-39
ZFIN|ZDB-GENE-081022-145 390 adrb1 "adrenergic receptor, be 0.622 0.461 0.419 1.8e-39
MGI|MGI:109246 388 Htr4 "5 hydroxytryptamine (ser 0.650 0.484 0.482 3.7e-39
UNIPROTKB|F1NJL4 371 HTR4 "Uncharacterized protein" 0.629 0.490 0.473 6.1e-39
UNIPROTKB|E2RK32 360 HTR4 "Uncharacterized protein" 0.643 0.516 0.474 6.1e-39
UNIPROTKB|J9P6F0 357 HTR4 "Uncharacterized protein" 0.643 0.521 0.474 6.1e-39
FB|FBgn0038980 oa2 "octopamine receptor 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 130/190 (68%), Positives = 157/190 (82%)

Query:   100 VSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYF 159
             ++AI GN+LVIVSVMRHRKLR+ITNYFVVSLA ADMLVA  AM FN SV I  +W+FG  
Sbjct:   119 LAAILGNMLVIVSVMRHRKLRIITNYFVVSLAVADMLVALCAMTFNASVMISGKWMFGSV 178

Query:   160 MCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALV 219
             MCD+WNS DVYFS+ASI+HLCCISVDRYYAIVQPLDY LIMT+ R+ IML +VWLSPAL+
Sbjct:   179 MCDMWNSFDVYFSTASIMHLCCISVDRYYAIVQPLDYPLIMTQRRVFIMLLMVWLSPALL 238

Query:   220 SFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKE 279
             SFLPI  GWYTT  +  +   NP+ C F VN+ Y +VSS +SFWIPG++M+ MYY+IY+E
Sbjct:   239 SFLPICSGWYTTTENYKYLKSNPHICEFKVNKAYAIVSSSMSFWIPGIVMLSMYYRIYQE 298

Query:   280 ADRQEHMLFR 289
             ADRQE +++R
Sbjct:   299 ADRQERLVYR 308
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA;ISS
GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS
GO:0071875 "adrenergic receptor signaling pathway" evidence=IEA
GO:0004935 "adrenergic receptor activity" evidence=IEA
GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IDA
GO:0005887 "integral to plasma membrane" evidence=IC
GO:0004989 "octopamine receptor activity" evidence=IDA
GO:0051482 "elevation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway" evidence=IDA
GO:0045886 "negative regulation of synaptic growth at neuromuscular junction" evidence=IMP
FB|FBgn0038063 Octbeta2R "Octbeta2R" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0250910 Octbeta3R "Octbeta3R" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1RLA8 HTR4 "5-hydroxytryptamine receptor 4" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1RLB0 HTR4 "5-hydroxytryptamine receptor 4" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081022-145 adrb1 "adrenergic receptor, beta 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:109246 Htr4 "5 hydroxytryptamine (serotonin) receptor 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJL4 HTR4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RK32 HTR4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P6F0 HTR4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9VCZ3OCTB1_DROMENo assigned EC number0.66500.70240.3996yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query289
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 1e-36
PHA03087335 PHA03087, PHA03087, G protein-coupled chemokine re 3e-13
PHA02638 417 PHA02638, PHA02638, CC chemokine receptor-like pro 1e-07
pfam10320257 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR 0.002
pfam10328275 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR 0.004
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score =  130 bits (330), Expect = 1e-36
 Identities = 52/174 (29%), Positives = 86/174 (49%)

Query: 111 VSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVY 170
           + ++R +KLR  TN F+++LA AD+L       + L   +   W FG  +C +   L V 
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60

Query: 171 FSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYT 230
              ASIL L  IS+DRY AIV PL Y  I T  R  +++ +VW+   L+S  P+   W  
Sbjct: 61  NGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLR 120

Query: 231 THAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQE 284
           T       +   +       R Y ++S+ + F +P ++++  Y  I +   ++ 
Sbjct: 121 TVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRA 174

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor Srsx Back     alignment and domain information
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor Srx Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 289
KOG4219|consensus 423 100.0
KOG4220|consensus 503 99.98
PHA03234 338 DNA packaging protein UL33; Provisional 99.97
PHA02834323 chemokine receptor-like protein; Provisional 99.97
PHA03235 409 DNA packaging protein UL33; Provisional 99.97
PHA02638 417 CC chemokine receptor-like protein; Provisional 99.97
PHA03087335 G protein-coupled chemokine receptor-like protein; 99.96
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.95
KOG2087|consensus 363 99.78
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.65
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.47
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.4
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 99.28
PF11710201 Git3: G protein-coupled glucose receptor regulatin 99.26
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 99.04
PF05462 303 Dicty_CAR: Slime mold cyclic AMP receptor 98.99
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 98.33
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 98.31
PF10292 324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 98.31
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 98.27
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 98.17
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 98.16
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 98.06
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 97.69
KOG4193|consensus 610 97.5
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 97.4
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 97.22
PF02117328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 97.2
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 96.28
PF02101 405 Ocular_alb: Ocular albinism type 1 protein; InterP 96.13
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 96.1
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 96.08
KOG4564|consensus 473 96.05
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 95.88
PF02076283 STE3: Pheromone A receptor; InterPro: IPR001499 G- 95.15
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 95.07
PF01534 328 Frizzled: Frizzled/Smoothened family membrane regi 95.02
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 94.64
PF03125 365 Sre: C. elegans Sre G protein-coupled chemorecepto 93.54
>KOG4219|consensus Back     alignment and domain information 
Probab=100.00  E-value=9.9e-33  Score=236.23  Aligned_cols=199  Identities=24%  Similarity=0.428  Sum_probs=167.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhHH
Q psy9323          84 LSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDV  163 (289)
Q Consensus        84 ~~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~  163 (289)
                      ..+...+.+++++++.++++.||++|++++..+|++|+.+|++++|||+||++.+++..++...+...+.|.+|...|++
T Consensus        31 p~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f  110 (423)
T KOG4219|consen   31 PAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRF  110 (423)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeee
Confidence            34567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc------ccc
Q psy9323         164 WNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAH------QLF  237 (289)
Q Consensus       164 ~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~------~~~  237 (289)
                      ..|+......+|++++++||+|||+||.||++.+  .++|..+.+++++|+.+++++.|..+.........      ..+
T Consensus       111 ~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~  188 (423)
T KOG4219|consen  111 VNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVC  188 (423)
T ss_pred             ccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEE
Confidence            9999999999999999999999999999999854  69999999999999999999987776432211111      001


Q ss_pred             ccCCC-Cccccccc----ceehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9323         238 RSHNP-NSCIFVVN----RIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQE  284 (289)
Q Consensus       238 ~~~~~-~~c~~~~~----~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~  284 (289)
                      ....+ ..|....+    ..|.....++.|++|++++..+|.+|.+++|+.+
T Consensus       189 ~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~  240 (423)
T KOG4219|consen  189 VTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRR  240 (423)
T ss_pred             EEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            11111 11322222    2388888899999999999999999999998754

>KOG4220|consensus Back     alignment and domain information
>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ] Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query289
2y00_B 315 Turkey Beta1 Adrenergic Receptor With Stabilising M 2e-39
2vt4_A313 Turkey Beta1 Adrenergic Receptor With Stabilising M 2e-39
2r4r_A 365 Crystal Structure Of The Human Beta2 Adrenoceptor L 3e-38
3pds_A 458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 3e-38
2r4s_A 342 Crystal Structure Of The Human Beta2 Adrenoceptor L 3e-38
3p0g_A 501 Structure Of A Nanobody-Stabilized Active State Of 4e-38
2rh1_A 500 High Resolution Crystal Structure Of Human B2-Adren 4e-38
3sn6_R 514 Crystal Structure Of The Beta2 Adrenergic Receptor- 5e-38
3d4s_A 490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 6e-38
3kj6_A 366 Crystal Structure Of A Methylated Beta2 Adrenergic 1e-37
4gbr_A 309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 2e-37
4daj_A 479 Structure Of The M3 Muscarinic Acetylcholine Recept 1e-24
3pbl_A 481 Structure Of The Human Dopamine D3 Receptor In Comp 8e-23
3rze_A 452 Structure Of The Human Histamine H1 Receptor In Com 4e-18
3uon_A 467 Structure Of The Human M2 Muscarinic Acetylcholine 7e-18
2ks9_A 364 Solution Conformation Of Substance P In Water Compl 6e-14
3pwh_A 329 Thermostabilised Adenosine A2a Receptor Length = 32 2e-13
4eiy_A 447 Crystal Structure Of The Chimeric Protein Of A2aar- 1e-12
3eml_A 488 The 2.6 A Crystal Structure Of A Human A2a Adenosin 1e-12
2ydo_A 325 Thermostabilised Human A2a Receptor With Adenosine 2e-12
3vg9_A 326 Crystal Structure Of Human Adenosine A2a Receptor W 3e-12
4djh_A 480 Structure Of The Human Kappa Opioid Receptor In Com 3e-12
4dkl_A 464 Crystal Structure Of The Mu-Opioid Receptor Bound T 6e-11
2z73_A 448 Crystal Structure Of Squid Rhodopsin Length = 448 1e-10
2ziy_A 372 Crystal Structure Of Squid Rhodopsin Length = 372 1e-10
4ej4_A 461 Structure Of The Delta Opioid Receptor Bound To Nal 3e-10
4ea3_B 434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 3e-10
3oax_A 349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 5e-08
1jfp_A 348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 5e-08
2x72_A 349 Crystal Structure Of The Constitutively Active E113 5e-08
2j4y_A 349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 6e-08
3c9m_A 348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 6e-08
4a4m_A 349 Crystal Structure Of The Light-Activated Constituti 7e-08
3odu_A 502 The 2.5 A Structure Of The Cxcr4 Chemokine Receptor 2e-06
3oe6_A 508 Crystal Structure Of The Cxcr4 Chemokine Receptor I 2e-06
3oe0_A 499 Crystal Structure Of The Cxcr4 Chemokine Receptor I 2e-06
2lnl_A296 Structure Of Human Cxcr1 In Phospholipid Bilayers L 6e-04
4grv_A 510 The Crystal Structure Of The Neurotensin Receptor N 9e-04
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure 
Iteration: 1

 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 118/188 (62%), Gaps = 1/188 (0%)
Query: 103 IFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCD 162
           + GN+LVI ++   ++L+ +TN F+ SLA AD++V    + F  ++ +   WL+G F+C+
Sbjct: 26  VAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCE 85
Query: 163 VWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFL 222
           +W SLDV   +ASI  LC I++DRY AI  P  Y  +MT++R  +++C VW   ALVSFL
Sbjct: 86  LWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFL 145
Query: 223 PIFLGWYTTHAHQLFRS-HNPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEAD 281
           PI + W+     Q  +   +P  C FV NR Y + SS +SF+IP +IMI++  ++Y+EA 
Sbjct: 146 PIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAK 205
Query: 282 RQEHMLFR 289
            Q   + R
Sbjct: 206 EQIRKIDR 213
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479 Back     alignment and structure
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467 Back     alignment and structure
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447 Back     alignment and structure
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480 Back     alignment and structure
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461 Back     alignment and structure
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502 Back     alignment and structure
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508 Back     alignment and structure
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499 Back     alignment and structure
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers Length = 296 Back     alignment and structure
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In Complex With Neurotensin (8-13) Length = 510 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query289
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 1e-86
3sn6_R 514 Lysozyme, beta-2 adrenergic receptor; seven transm 4e-85
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 2e-80
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 2e-79
4amj_A 315 Beta-1 adrenergic receptor; membrane protein, 7TMR 1e-78
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 2e-73
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 3e-73
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 6e-72
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 7e-51
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 2e-36
2ks9_A 364 Substance-P receptor; water, autodock, NK1, neurop 5e-36
1u19_A 349 Rhodopsin; G protein-coupled receptor, membrane pr 2e-35
4ea3_A 434 Fusion protein of nociceptin receptor and cytochr; 5e-30
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 4e-28
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 5e-26
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 8e-10
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
 Score =  266 bits (682), Expect = 1e-86
 Identities = 77/227 (33%), Positives = 131/227 (57%), Gaps = 1/227 (0%)

Query: 62  TSGVISNDSYFPLYDYDERSFALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRV 121
            S  +   +     D+D       + +    ++M  I+++ +FGN+LVI ++ +  +L+ 
Sbjct: 14  GSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQT 73

Query: 122 ITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCC 181
           +TNYF+ SLA AD+++    + F  +  +   W FG F C+ W S+DV   +ASI  LC 
Sbjct: 74  VTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCV 133

Query: 182 ISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYT-THAHQLFRSH 240
           I+VDRY+AI  P  Y  ++TK++  +++ +VW+   L SFLPI + WY  TH   +    
Sbjct: 134 IAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYA 193

Query: 241 NPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHML 287
               C F  N+ Y + SS VSF++P VIM+++Y ++++EA RQ ++ 
Sbjct: 194 EETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIF 240
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Length = 32 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query289
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 100.0
4grv_A 510 Neurotensin receptor type 1, lysozyme chimera; G-p 100.0
1u19_A 349 Rhodopsin; G protein-coupled receptor, membrane pr 99.98
4amj_A 315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.98
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 99.98
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 99.98
3vw7_A 484 Proteinase-activated receptor 1, lysozyme; high re 99.97
2ks9_A 364 Substance-P receptor; water, autodock, NK1, neurop 99.97
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 99.97
4ea3_A 434 Fusion protein of nociceptin receptor and cytochr; 99.97
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 99.97
3sn6_R 514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.97
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.97
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 99.97
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.97
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 99.97
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.97
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.97
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.71
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 96.52
2rdd_B37 UPF0092 membrane protein YAJC; drug resistance, mu 82.41
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
Probab=100.00  E-value=1e-33  Score=261.65  Aligned_cols=200  Identities=36%  Similarity=0.773  Sum_probs=170.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhHHHHH
Q psy9323          87 LITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNS  166 (289)
Q Consensus        87 ~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~  166 (289)
                      ...+..+++.+++++|++||+++++++.++|++|++.|+|++|||++|++.+++.+|+.+.....+.|.+|...|++..+
T Consensus        39 ~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~~~~  118 (500)
T 2rh1_A           39 WVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTS  118 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhHHHH
Confidence            44556688999999999999999999999999999999999999999999999899999988888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-ccccCCCCcc
Q psy9323         167 LDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQ-LFRSHNPNSC  245 (289)
Q Consensus       167 ~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~c  245 (289)
                      +..++..+|++++++||+|||+||++|++|++.++++++..+++++|+++++++++|.+.+|....... ..|......|
T Consensus       119 ~~~~~~~~Si~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~p~~~~~~~~~~~~~~~c~~~~~~~  198 (500)
T 2rh1_A          119 IDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCC  198 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHeeccCcCCeeecccceeehhhHHHHHHHHHHhcchheeeecccccCcceeccccccc
Confidence            999999999999999999999999999999999999999999999999999999878766654432211 1122122112


Q ss_pred             cccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy9323         246 IFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHM  286 (289)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~~~  286 (289)
                      .......|.+...++.|++|+++|++||.+|++++||+.++
T Consensus       199 ~~~~~~~y~~~~~~~~~~iPl~ii~~~Y~~I~~~l~~~~~~  239 (500)
T 2rh1_A          199 DFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNI  239 (500)
T ss_dssp             CCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCSH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23344567777778889999999999999999999998776
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 289
d1u19a_ 348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 3e-16
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.8 bits (185), Expect = 3e-16
 Identities = 35/204 (17%), Positives = 81/204 (39%), Gaps = 1/204 (0%)

Query: 75  YDYDERSFALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFAD 134
           ++  +   A     ++    M  +I+     N L +   ++H+KLR   NY +++LA AD
Sbjct: 24  FEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVAD 83

Query: 135 MLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPL 194
           + + FG     L   +   ++FG   C++           ++  L  ++++RY  + +P+
Sbjct: 84  LFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPM 143

Query: 195 DYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSC-IFVVNRIY 253
                     ++ +     ++ A  +   +    Y     Q     +  +      N  +
Sbjct: 144 SNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESF 203

Query: 254 CVVSSCVSFWIPGVIMIYMYYQIY 277
            +    V F IP +++ + Y Q+ 
Sbjct: 204 VIYMFVVHFIIPLIVIFFCYGQLV 227

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query289
d1u19a_ 348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.95
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=8.4e-28  Score=209.16  Aligned_cols=207  Identities=17%  Similarity=0.317  Sum_probs=164.5

Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccc
Q psy9323          78 DERSFALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFG  157 (289)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~  157 (289)
                      .+.+..+.+...+.++++.+++++|++||+++++++.++|++|++.|++++|||++|++.++...|..+.....+.|..+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~  106 (348)
T d1u19a_          27 PQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFG  106 (348)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTH
T ss_pred             CccccccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccC
Confidence            34444445556677788999999999999999999999999999999999999999999999899998888888899999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy9323         158 YFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLF  237 (289)
Q Consensus       158 ~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~~~~  237 (289)
                      ...|+...++...+..+|+++++++++|||.+|++|++++.. ++++....+..+|..+++...++.+. ......+...
T Consensus       107 ~~~c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  184 (348)
T d1u19a_         107 PTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAPPLVG-WSRYIPEGMQ  184 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHHSGGGTT-SSCCEEETTT
T ss_pred             chhhhhhhhccccceeeecchhhhhhcccceeeecccccccc-ccccccccceeeehhhhheecccccc-cceeccCCcc
Confidence            999999999999999999999999999999999999998765 66777788888898888888777763 3222221111


Q ss_pred             --ccC-CCCcccccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy9323         238 --RSH-NPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHM  286 (289)
Q Consensus       238 --~~~-~~~~c~~~~~~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~~~  286 (289)
                        +.. ............+.+....+.+++|+++++++|.++.+++||+.++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~  236 (348)
T d1u19a_         185 CSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQ  236 (348)
T ss_dssp             TEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCS
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence              111 1111112233455667777888999999999999999998877543