Psyllid ID: psy936

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
MSKSQPLTIRSACQVYLIPDEHTRYQVDLTLTGRPDQAYQQSGLPDSWLIIEQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHESATGSGLLAPFEIEVWFLILISLVLIGPIMHAIMRVRRWLSGTQSELYPISACTWFVYGALMKQGSTLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFTLPIHSVEDIANPTNTWCAEAGGAVEYSIKLYRFQTPEHFTIFWFD
cccccccccccccEEEEEEcccccEEEEEEEEccccccccccccccccEEEEEEEccccccccEEEEEcccccEEEEEccccccEEEEEEHHHHHHHHHHHcccEEEEEEcccccccccccccccEEEccEEEEEEEccHHHHHHHHHHHHHHccccccccEEEEEEEEEEEcccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHcccccEEEEEcccHHHHHHHHHccccHHHHHHHccc
ccccccccccEEEEEEEEccccEEEEEEEEEEEcccccEEEcccccccEEcccccccccccEEEEEEEEcccEEEEEccccccccccccHHHHHHHHHHHHcccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEEccccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccEEEEEccccHHHHHHHcHHHHHHHHHHHHcc
msksqpltiRSACQVylipdehtryqvdltltgrpdqayqqsglpdsWLIIEQLrlpieptipsflfqdqkpmswvttnnktgklegHGIAFEILNTLSAKYEFSYEIilpsrktlldqdgsIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKrphesatgsgllapFEIEVWFLILISLVLIGPIMHAIMRVRRWlsgtqselypisaCTWFVYGALmkqgstlnprtdstrIMFASWWIFIMILTAFYTANLTAFLTLSqftlpihsvedianptntwcaeaggaVEYSIKLYrfqtpehftifwfd
msksqpltiRSACQVYLIPDEHTRYQVDLTLTGRPDQAYQQSGLPDSWLIIEQLRLPIEPTIPsflfqdqkpmSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHESATGSGLLAPFEIEVWFLILISLVLIGPIMHAIMRVRRWLSGTQSELYPISACTWFVYGALMKQGSTLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFTLPIHSVEDIANPTNTWCAEAGGAVEYSIKLYRFQTPEHFTIFWFD
MSKSQPLTIRSACQVYLIPDEHTRYQVDLTLTGRPDQAYQQSGLPDSWLIIEQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSeeeelklqlqqeeAMKWKWGIELGQSQYVVMMKRPHESATGSGLLAPFEIEVWFLILISLVLIGPIMHAIMRVRRWLSGTQSELYPISACTWFVYGALMKQGSTLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFTLPIHSVEDIANPTNTWCAEAGGAVEYSIKLYRFQTPEHFTIFWFD
*******TIRSACQVYLIPDEHTRYQVDLTLTGRPDQAYQQSGLPDSWLIIEQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALV********LQLQQEEAMKWKWGIELGQSQYVVMMKRPHESATGSGLLAPFEIEVWFLILISLVLIGPIMHAIMRVRRWLSGTQSELYPISACTWFVYGALMKQGSTLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFTLPIHSVEDIANPTNTWCAEAGGAVEYSIKLYRFQTPEHFTIFWF*
***********ACQVYLIPDEHTRYQVDLTLTGRPDQAYQQSGLPDSWLIIEQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPH**ATGSGLLAPFEIEVWFLILISLVLIGPIMHAIMRVRRWLSGTQSELYPISACTWFVYGALMKQGSTLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFTLPIHSVEDIANPTNTWCAEAGGAVEYSIKLYRFQTPEHFTIFWFD
MSKSQPLTIRSACQVYLIPDEHTRYQVDLTLTGRPDQAYQQSGLPDSWLIIEQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHESATGSGLLAPFEIEVWFLILISLVLIGPIMHAIMRVRRWLSGTQSELYPISACTWFVYGALMKQGSTLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFTLPIHSVEDIANPTNTWCAEAGGAVEYSIKLYRFQTPEHFTIFWFD
******LTIRSACQVYLIPDEHTRYQVDLTLTGRPDQAYQQSGLPDSWLIIEQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHESATGSGLLAPFEIEVWFLILISLVLIGPIMHAIMRVRRWLSGTQSELYPISACTWFVYGALMKQGSTLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFTLPIHSVEDIANPTNTWCAEAGGAVEYSIKLYRFQTPEHFTIFWFD
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSKSQPLTIRSACQVYLIPDEHTRYQVDLTLTGRPDQAYQQSGLPDSWLIIEQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMxxxxxxxxxxxxxxxxxxxxxKWKWGIELGQSQYVVMMKRPHESATGSGLLAPFEIEVWFLILISLVLIGPIMHAIMRVRRWLSGTQSELYPISACTWFVYGALMKQGSTLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFTLPIHSVEDIANPTNTWCAEAGGAVEYSIKLYRFQTPEHFTIFWFD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query344 2.2.26 [Sep-21-2011]
P34299 962 Glutamate receptor 1 OS=C yes N/A 0.706 0.252 0.264 1e-17
P23818 907 Glutamate receptor 1 OS=M yes N/A 0.473 0.179 0.322 3e-17
P19490 907 Glutamate receptor 1 OS=R yes N/A 0.473 0.179 0.322 3e-17
Q38PU8 906 Glutamate receptor 1 OS=M N/A N/A 0.473 0.179 0.322 3e-17
P42261 906 Glutamate receptor 1 OS=H yes N/A 0.473 0.179 0.322 3e-17
Q68Y21 1009 Glutamate receptor ionotr yes N/A 0.642 0.219 0.28 4e-17
Q61627 1009 Glutamate receptor ionotr no N/A 0.363 0.123 0.323 4e-17
Q62640 1009 Glutamate receptor ionotr no N/A 0.363 0.123 0.315 5e-17
Q9ULK0 1009 Glutamate receptor ionotr no N/A 0.363 0.123 0.315 9e-17
Q38PU7 883 Glutamate receptor 2 OS=M N/A N/A 0.436 0.169 0.315 4e-16
>sp|P34299|GLR1_CAEEL Glutamate receptor 1 OS=Caenorhabditis elegans GN=glr-1 PE=1 SV=2 Back     alignment and function desciption
 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 121/284 (42%), Gaps = 41/284 (14%)

Query: 73  MSWVTTNNKTGKLEGHGIAFEILNTLSAKYE-FSYEIILPSRKTLLDQDGS---IMNILK 128
           M+ +T      K EG  I  ++L  L+ K E F+YEI L ++      DGS   ++  L 
Sbjct: 480 MANLTECQGNNKFEGFCI--DLLKLLADKIEEFNYEIKLGTKAGSKQADGSWDGMIGELL 537

Query: 129 TGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMK 188
           +G    V A                        L + QE      +      +   +M+K
Sbjct: 538 SGRAHAVVA-----------------------SLTINQERERVVDFSKPFMTTGISIMIK 574

Query: 189 RPHESATGS-GLLAPFEIEVWFLILISLVLIGPIMHAIMR-------VRRWLSG--TQSE 238
           +P +        + P   E+W  I+ + + +  ++  + R       V     G  T S 
Sbjct: 575 KPDKQEFSVFSFMQPLSTEIWMYIIFAYIGVSVVIFLVSRFSPYEWRVEETSRGGFTISN 634

Query: 239 LYPISACTWFVYGALMKQGSTLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQF 298
            + +  C WF   A M+QG+ + PR+ S RI  ++WW F MI+ + YTANL AFLTL + 
Sbjct: 635 DFSVYNCLWFTLAAFMQQGTDILPRSISGRIASSAWWFFTMIIVSSYTANLAAFLTLEKM 694

Query: 299 TLPIHSVEDIANPTNTWCAEAGGAVEYSIKLYRFQTPEHFTIFW 342
             PI SVED+A  +       GG    S   +++ + + +   W
Sbjct: 695 QAPIESVEDLAKQSKIKYGIQGGGSTAS--FFKYSSVQIYQRMW 736
Non-NMDA (N-methyl-D-aspartate) ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. The postsynaptic actions of glutamate are mediated by a variety of receptors that are named according to their selective agonists. May contribute to a sensory discrimination between mechanical and chemical stimuli.
Caenorhabditis elegans (taxid: 6239)
>sp|P23818|GRIA1_MOUSE Glutamate receptor 1 OS=Mus musculus GN=Gria1 PE=1 SV=1 Back     alignment and function description
>sp|P19490|GRIA1_RAT Glutamate receptor 1 OS=Rattus norvegicus GN=Gria1 PE=1 SV=2 Back     alignment and function description
>sp|Q38PU8|GRIA1_MACFA Glutamate receptor 1 OS=Macaca fascicularis GN=GRIA1 PE=2 SV=1 Back     alignment and function description
>sp|P42261|GRIA1_HUMAN Glutamate receptor 1 OS=Homo sapiens GN=GRIA1 PE=1 SV=2 Back     alignment and function description
>sp|Q68Y21|GRID2_DANRE Glutamate receptor ionotropic, delta-2 OS=Danio rerio GN=grid2 PE=2 SV=1 Back     alignment and function description
>sp|Q61627|GRID1_MOUSE Glutamate receptor ionotropic, delta-1 OS=Mus musculus GN=Grid1 PE=1 SV=2 Back     alignment and function description
>sp|Q62640|GRID1_RAT Glutamate receptor ionotropic, delta-1 OS=Rattus norvegicus GN=Grid1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ULK0|GRID1_HUMAN Glutamate receptor ionotropic, delta-1 OS=Homo sapiens GN=GRID1 PE=2 SV=2 Back     alignment and function description
>sp|Q38PU7|GRIA2_MACFA Glutamate receptor 2 OS=Macaca fascicularis GN=GRIA2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
328714709338 PREDICTED: glutamate receptor delta-1 su 0.729 0.742 0.539 6e-76
24667182 636 ionotropic receptor 76b [Drosophila mela 0.656 0.355 0.436 1e-54
195591725 637 GD12224 [Drosophila simulans] gi|1941975 0.688 0.372 0.421 2e-54
170070632 523 conserved hypothetical protein [Culex qu 0.674 0.443 0.432 2e-54
195348125 636 GM22253 [Drosophila sechellia] gi|194122 0.656 0.355 0.432 4e-54
195427275 647 GK17045 [Drosophila willistoni] gi|19415 0.654 0.347 0.422 5e-54
312377806 702 hypothetical protein AND_10781 [Anophele 0.694 0.340 0.431 9e-54
194748022 634 GF25213 [Drosophila ananassae] gi|190623 0.656 0.356 0.428 2e-53
194874599 636 GG13346 [Drosophila erecta] gi|190655212 0.656 0.355 0.436 3e-53
195015753 630 GH16353 [Drosophila grimshawi] gi|193897 0.656 0.358 0.412 1e-52
>gi|328714709|ref|XP_001952331.2| PREDICTED: glutamate receptor delta-1 subunit-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  290 bits (742), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 149/276 (53%), Positives = 192/276 (69%), Gaps = 25/276 (9%)

Query: 67  FQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNI 126
           F + KP+SWVT     G L GHGIAFEI+ TL  +Y F+Y++++P+R+TLL+++GSI+ +
Sbjct: 70  FPNSKPLSWVT-KEINGTLIGHGIAFEIVETLRQRYGFTYDVVVPTRETLLNENGSIIYM 128

Query: 127 LKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVM 186
           L  GEVDM AAF+PVL    + +                       KWGI+L Q QYVV+
Sbjct: 129 LVNGEVDMAAAFIPVLPGLDDIV-----------------------KWGIDLTQFQYVVL 165

Query: 187 MKRPHESATGSGLLAPFEIEVWFLILISLVLIGPIMHAIMRVRRWLSGTQSE-LYPISAC 245
           MKRP ESATGSGLLAPFE+EVW LIL+SL+ +GPI++ IM +R  L G  S  +Y I  C
Sbjct: 166 MKRPKESATGSGLLAPFEMEVWLLILMSLIAVGPIIYGIMMLRHKLCGHDSGIIYSIPTC 225

Query: 246 TWFVYGALMKQGSTLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFTLPIHSV 305
            WFVYGALMKQGS+LNP TDS R++FA+WWIFIMILT+FYTANLTAFLTLS+FTLPI  +
Sbjct: 226 VWFVYGALMKQGSSLNPDTDSARLIFATWWIFIMILTSFYTANLTAFLTLSKFTLPIKRI 285

Query: 306 EDIANPTNTWCAEAGGAVEYSIKLYRFQTPEHFTIF 341
           +DIA+    W +  G AVEY +K+     P   ++F
Sbjct: 286 DDIASNEYRWISSEGSAVEYIVKVDNDLKPLKQSMF 321

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|24667182|ref|NP_649176.1| ionotropic receptor 76b [Drosophila melanogaster] gi|7293701|gb|AAF49071.1| ionotropic receptor 76b [Drosophila melanogaster] gi|66771743|gb|AAY55183.1| IP13856p [Drosophila melanogaster] gi|66771759|gb|AAY55191.1| IP13956p [Drosophila melanogaster] gi|316994957|gb|ADU79033.1| ionotropic receptor 76b [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195591725|ref|XP_002085589.1| GD12224 [Drosophila simulans] gi|194197598|gb|EDX11174.1| GD12224 [Drosophila simulans] Back     alignment and taxonomy information
>gi|170070632|ref|XP_001869653.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167866543|gb|EDS29926.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|195348125|ref|XP_002040601.1| GM22253 [Drosophila sechellia] gi|194122111|gb|EDW44154.1| GM22253 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|195427275|ref|XP_002061702.1| GK17045 [Drosophila willistoni] gi|194157787|gb|EDW72688.1| GK17045 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|312377806|gb|EFR24546.1| hypothetical protein AND_10781 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|194748022|ref|XP_001956448.1| GF25213 [Drosophila ananassae] gi|190623730|gb|EDV39254.1| GF25213 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|194874599|ref|XP_001973429.1| GG13346 [Drosophila erecta] gi|190655212|gb|EDV52455.1| GG13346 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195015753|ref|XP_001984268.1| GH16353 [Drosophila grimshawi] gi|193897750|gb|EDV96616.1| GH16353 [Drosophila grimshawi] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
FB|FBgn0036937 636 Ir76b "Ionotropic receptor 76b 0.438 0.237 0.578 2.9e-56
UNIPROTKB|I3L7T2229 LOC100623470 "Uncharacterized 0.316 0.475 0.313 5.1e-19
UNIPROTKB|I3L657237 LOC100739538 "Uncharacterized 0.343 0.497 0.317 1.3e-18
WB|WBGene00001612 962 glr-1 [Caenorhabditis elegans 0.453 0.162 0.297 2.5e-16
UNIPROTKB|F1PEI5 922 GRID2 "Uncharacterized protein 0.363 0.135 0.305 3.9e-16
MGI|MGI:95813 1007 Grid2 "glutamate receptor, ion 0.363 0.124 0.305 5e-16
RGD|68368 1007 Grid2 "glutamate receptor, ion 0.363 0.124 0.305 5e-16
UNIPROTKB|Q63226 1007 Grid2 "Glutamate receptor iono 0.363 0.124 0.305 5e-16
UNIPROTKB|E9PH24 912 GRID2 "Glutamate receptor iono 0.360 0.135 0.308 5e-16
UNIPROTKB|O43424 1007 GRID2 "Glutamate receptor iono 0.360 0.123 0.308 6.6e-16
FB|FBgn0036937 Ir76b "Ionotropic receptor 76b" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 470 (170.5 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
 Identities = 88/152 (57%), Positives = 118/152 (77%)

Query:   178 LGQSQYVVMMKRPHESATGSGLLAPFEIEVWFLILISLVLIGPIMHAIMRVRRWLSGT-Q 236
             L + +++++M+RP ESA+GSGLLAPFE  VW LIL+SL+ +GPI++A++ +R  L+G  Q
Sbjct:   180 LDEGEWIMVMQRPRESASGSGLLAPFEFWVWILILVSLLAVGPIIYALIILRNRLTGDGQ 239

Query:   237 SELYPISACTWFVYGALMKQGSTLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLS 296
                Y +  C WFVYGALMKQGSTL+P  DSTR++FA+WWIFI ILT+FYTANLTAFLTLS
Sbjct:   240 QTPYSLGHCAWFVYGALMKQGSTLSPIADSTRLLFATWWIFITILTSFYTANLTAFLTLS 299

Query:   297 QFTLPIHSVEDIANPTNTWCAEAGGAVEYSIK 328
             +FTLP ++V DI      + +  GG VEY+I+
Sbjct:   300 KFTLPYNTVNDILTKNKHFVSMRGGGVEYAIR 331
GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA
GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA
GO:0009593 "detection of chemical stimulus" evidence=ISS
GO:0016021 "integral to membrane" evidence=ISM
GO:0015276 "ligand-gated ion channel activity" evidence=ISM
UNIPROTKB|I3L7T2 LOC100623470 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3L657 LOC100739538 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
WB|WBGene00001612 glr-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1PEI5 GRID2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:95813 Grid2 "glutamate receptor, ionotropic, delta 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|68368 Grid2 "glutamate receptor, ionotropic, delta 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q63226 Grid2 "Glutamate receptor ionotropic, delta-2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E9PH24 GRID2 "Glutamate receptor ionotropic, delta-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O43424 GRID2 "Glutamate receptor ionotropic, delta-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
pfam00060 268 pfam00060, Lig_chan, Ligand-gated ion channel 1e-26
>gnl|CDD|215685 pfam00060, Lig_chan, Ligand-gated ion channel Back     alignment and domain information 
 Score =  106 bits (266), Expect = 1e-26
 Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 3/108 (2%)

Query: 206 EVWFLILISLVLIGPIMHAIMRV--RRW-LSGTQSELYPISACTWFVYGALMKQGSTLNP 262
           EVW  IL + +L+G ++  + R     W     +   + +S   WF +GAL++QG    P
Sbjct: 1   EVWLCILAAYLLVGVVLFLLERFSPYEWRGPPEEPNQFTLSNSLWFSFGALVQQGHRELP 60

Query: 263 RTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFTLPIHSVEDIAN 310
           R+ S RI+   WW F +IL + YTANL AFLT+ +   PI S+ED+A 
Sbjct: 61  RSLSGRILVGVWWFFALILLSSYTANLAAFLTVERMQSPIQSLEDLAK 108

This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors. Length = 268

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 344
KOG1054|consensus 897 100.0
KOG1052|consensus 656 100.0
KOG4440|consensus 993 99.97
KOG1053|consensus 1258 99.97
PF00060148 Lig_chan: Ligand-gated ion channel; InterPro: IPR0 99.65
PF00497225 SBP_bac_3: Bacterial extracellular solute-binding 99.18
PRK11917259 bifunctional adhesin/ABC transporter aspartate/glu 98.84
PRK15010260 ABC transporter lysine/arginine/ornithine binding 98.82
PRK15437259 histidine ABC transporter substrate-binding protei 98.75
PRK10797302 glutamate and aspartate transporter subunit; Provi 98.75
PRK15007243 putative ABC transporter arginine-biding protein; 98.73
PRK09495247 glnH glutamine ABC transporter periplasmic protein 98.73
PRK11260266 cystine transporter subunit; Provisional 98.66
PF1061365 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- 98.64
TIGR02995275 ectoine_ehuB ectoine/hydroxyectoine ABC transporte 98.64
TIGR01096250 3A0103s03R lysine-arginine-ornithine-binding perip 98.63
TIGR03870246 ABC_MoxJ methanol oxidation system protein MoxJ. T 98.44
PRK10859 482 membrane-bound lytic transglycosylase F; Provision 98.38
PRK09959 1197 hybrid sensory histidine kinase in two-component r 98.21
PRK09959 1197 hybrid sensory histidine kinase in two-component r 98.19
cd00134218 PBPb Bacterial periplasmic transport systems use m 98.1
TIGR03871232 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associa 98.09
TIGR02285268 conserved hypothetical protein. Members of this fa 98.07
smart00062219 PBPb Bacterial periplasmic substrate-binding prote 97.97
COG0834275 HisJ ABC-type amino acid transport/signal transduc 97.9
COG4623 473 Predicted soluble lytic transglycosylase fused to 97.2
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 95.74
TIGR01098254 3A0109s03R phosphate/phosphite/phosphonate ABC tra 93.9
PRK00489287 hisG ATP phosphoribosyltransferase; Reviewed 84.41
>KOG1054|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.4e-41  Score=335.75  Aligned_cols=234  Identities=23%  Similarity=0.444  Sum_probs=217.4

Q ss_pred             CceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCC------chhhhhhcccceecEEEeeccchhhhhHHHhhhhhhH
Q psy936           83 GKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQ------DGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSE  156 (344)
Q Consensus        83 g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~------~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~  156 (344)
                      |.-++.|+++|++.+||++.+.+|++....++.||..      |+||+|.|..|++|+++++++++.+|++         
T Consensus       441 gn~ryEGyCvdLa~~iAkhi~~~Y~l~iv~dgkyGardaD~k~WnGMvGeLv~grAdiavApLTIt~~REe---------  511 (897)
T KOG1054|consen  441 GNERYEGYCVDLAAEIAKHIGIKYKLFIVGDGKYGARDADTKIWNGMVGELVYGRADIAVAPLTITLVREE---------  511 (897)
T ss_pred             CCcccceeHHHHHHHHHHhcCceEEEEEecCCcccccCCCcccccchhHHHhcCccceEEeeeeeehhhhh---------
Confidence            4445669999999999999999999999989889974      6799999999999999999999999999         


Q ss_pred             HHHHHHHhhhccccEEEeceeeccceeEEEEeCCCCCC-CcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy936          157 EEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHESA-TGSGLLAPFEIEVWFLILISLVLIGPIMHAIMRVRRWLSGT  235 (344)
Q Consensus       157 ~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~~~-~~~~~l~PF~~~vWl~il~~~i~~~~vl~~i~r~~~~~~~~  235 (344)
                                    .+|||.||+..++.+|.++|..+. ..++|+.|...++|+|++.+++.++++++++.|++|++|+.
T Consensus       512 --------------viDFSKPfMslGISIMIKKPqKsk~gVFSFldPLa~eIWm~ivfaYiGVSvvlFLVSrFSPYEwh~  577 (897)
T KOG1054|consen  512 --------------VIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHT  577 (897)
T ss_pred             --------------hhccccchhhcCeEEEEeCcccCCCCeeeecchhHHHHHHHHHHHHhcceEEEEEEeccCchheec
Confidence                          999999999999999999998765 77899999999999999999999999999999999988864


Q ss_pred             C------------CCCcCchhHHHHHHHHHHcCCCCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeecCCCCCCCC
Q psy936          236 Q------------SELYPISACTWFVYGALMKQGSTLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFTLPIH  303 (344)
Q Consensus       236 ~------------~~~~~i~~~~~~~~~~ll~qg~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~~~I~  303 (344)
                      +            .+.+++.+|+|++++++|+||.+..||+.|+||+.++||+|+||++++|||||+++||..++.+||+
T Consensus       578 Ee~~rg~~t~~~~~NeFgifNsLWFsLgAFMQQG~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLTvErMvsPIE  657 (897)
T KOG1054|consen  578 EEFERGRFTPSDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIE  657 (897)
T ss_pred             cccccCCCCCCCCCccchhhHHHHHHHHHHHhcCCCCCccccccceeccchhhhhhhhhhhhhhHHHHHHhHHhhcCcch
Confidence            2            2367899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHhCCC-CcEEEEcCchhhHhhhhccCCCcccccccc
Q psy936          304 SVEDIANPT-NTWCAEAGGAVEYSIKLYRFQTPEHFTIFW  342 (344)
Q Consensus       304 TledL~~s~-~~~g~~~~~~~e~~l~~~~~~~~~~~~~~~  342 (344)
                      |.|||++++ +.||+..++++..|++.   .+...|+|+|
T Consensus       658 SaEDLAkQteIaYGt~~~GSTkeFFr~---Skiavy~kMW  694 (897)
T KOG1054|consen  658 SAEDLAKQTEIAYGTLDSGSTKEFFRR---SKIAVYEKMW  694 (897)
T ss_pred             hHHHHhhcceeeeeecCCCchHHHHhh---hhHHHHHHHH
Confidence            999999987 79999999999999988   5566777777

>KOG1052|consensus Back     alignment and domain information
>KOG4440|consensus Back     alignment and domain information
>KOG1053|consensus Back     alignment and domain information
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory Back     alignment and domain information
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed Back     alignment and domain information
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional Back     alignment and domain information
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional Back     alignment and domain information
>PRK10797 glutamate and aspartate transporter subunit; Provisional Back     alignment and domain information
>PRK15007 putative ABC transporter arginine-biding protein; Provisional Back     alignment and domain information
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed Back     alignment and domain information
>PRK11260 cystine transporter subunit; Provisional Back     alignment and domain information
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ] Back     alignment and domain information
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein Back     alignment and domain information
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein Back     alignment and domain information
>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ Back     alignment and domain information
>PRK10859 membrane-bound lytic transglycosylase F; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein Back     alignment and domain information
>TIGR02285 conserved hypothetical protein Back     alignment and domain information
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein Back     alignment and domain information
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
3kg2_A 823 Ampa Subtype Ionotropic Glutamate Receptor In Compl 4e-17
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With Competitive Antagonist Zk 200775 Length = 823 Back     alignment and structure 
Iteration: 1

 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 14/142 (9%)
Query: 185 VMMKRPHESATGS-GLLAPFEIEVWFLILISLVLIGPIMHAIMRV-------------RR 230
           +M+K+P +S  G    L P   E+W  I+ + + +  ++  + R              R 
Sbjct: 493 IMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRE 552
Query: 231 WLSGTQSELYPISACTWFVYGALMKQGSTLNPRTDSTRIMFASWWIFIMILTAFYTANLT 290
             S   +  + I    WF  GA M+QG+ ++PR+ S RI+   WW F +I+ + YTANL 
Sbjct: 553 TQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLA 612
Query: 291 AFLTLSQFTLPIHSVEDIANPT 312
           AFLT+ +   PI S ED++  T
Sbjct: 613 AFLTVERMVSPIESAEDLSKQT 634

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
3kg2_A 823 Glutamate receptor 2; ION channel, membrane protei 1e-24
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Length = 823 Back     alignment and structure
 Score =  104 bits (259), Expect = 1e-24
 Identities = 58/297 (19%), Positives = 112/297 (37%), Gaps = 46/297 (15%)

Query: 64  SFLFQDQKPMSWVTTNNK--TGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDG 121
                 + P   +  N+    G     G   ++   ++    F Y++ +        +D 
Sbjct: 387 VVTTILESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDA 446

Query: 122 S------IMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWG 175
                  ++  L  G+ D+  A + +  + + ++    K                     
Sbjct: 447 DTKIWNGMVGELVYGKADIAIAPLTI-TLVREEVIDFSKPFMS----------------- 488

Query: 176 IELGQSQYVVMMKRPHESATGS-GLLAPFEIEVWFLILISLVLIGPIMHAIMRV------ 228
                    +M+K+P +S  G    L P   E+W  I+ + + +  ++  + R       
Sbjct: 489 -----LGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWH 543

Query: 229 -------RRWLSGTQSELYPISACTWFVYGALMKQGSTLNPRTDSTRIMFASWWIFIMIL 281
                  R   S   +  + I    WF  GA M+QG+ ++PR+ S RI+   WW F +I+
Sbjct: 544 TEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLII 603

Query: 282 TAFYTANLTAFLTLSQFTLPIHSVEDIANPTN-TWCAEAGGAVEYSIKLYRFQTPEH 337
            + YTANL AFLT+ +   PI S ED++  T   +     G+ +   +  +    + 
Sbjct: 604 ISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDK 660

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
3kg2_A 823 Glutamate receptor 2; ION channel, membrane protei 100.0
1yae_A312 Glutamate receptor, ionotropic kainate 2; kainate 99.62
2rc8_A294 Glutamate [NMDA] receptor subunit 3A; membrane pro 99.45
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 99.45
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 99.28
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 99.28
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 99.26
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 99.19
4h5g_A243 Amino acid ABC superfamily ATP binding cassette tr 99.12
3k4u_A245 Binding component of ABC transporter; structural g 99.11
4gvo_A243 LMO2349 protein; structural genomics, IDP05245, L- 99.06
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 99.0
3hv1_A268 Polar amino acid ABC uptake transporter substrate 98.99
2q88_A257 EHUB, putative ABC transporter amino acid-binding 98.98
3i6v_A232 Periplasmic His/Glu/Gln/Arg/opine family-binding; 98.94
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 98.92
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 98.89
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 98.86
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 98.86
3kzg_A237 Arginine 3RD transport system periplasmic binding 98.85
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 98.83
3tql_A227 Arginine-binding protein; transport and binding pr 98.83
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 98.82
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 98.77
3del_B242 Arginine binding protein; alpha and beta protein ( 98.72
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 98.72
4eq9_A246 ABC transporter substrate-binding protein-amino A 98.71
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 98.69
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 98.69
2vha_A287 Periplasmic binding transport protein; periplasmic 98.51
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 98.49
2yln_A283 Putative ABC transporter, periplasmic binding Pro 98.42
1xt8_A292 Putative amino-acid transporter periplasmic solut 98.41
2v25_A259 Major cell-binding factor; antigen, adhesin, aspar 98.39
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 98.38
3qax_A268 Probable ABC transporter arginine-binding protein; 98.38
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 98.33
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 96.51
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 96.49
2a9h_A155 Voltage-gated potassium channel; potassium channel 96.37
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 96.1
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 95.91
3ouf_A97 Potassium channel protein; ION channel, membrane, 95.19
2q67_A114 Potassium channel protein; inverted teepee, helix 95.16
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 95.07
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 94.84
1xl4_A 301 Inward rectifier potassium channel; integral membr 93.37
2ozz_A231 Hypothetical protein YHFZ; alpha-beta structure, s 93.34
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 92.76
2qks_A 321 KIR3.1-prokaryotic KIR channel chimera; G-protein 92.64
1p7b_A 333 Integral membrane channel and cytosolic domains; t 92.28
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 91.99
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 90.72
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 89.48
3n5l_A310 Binding protein component of ABC phosphonate TRAN; 87.14
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 86.34
3ukm_A280 Potassium channel subfamily K member 1; membrane p 86.13
3p7i_A321 PHND, subunit of alkylphosphonate ABC transporter; 85.33
3sya_A 340 G protein-activated inward rectifier potassium CH; 80.21
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=1.8e-36  Score=320.60  Aligned_cols=255  Identities=22%  Similarity=0.404  Sum_probs=211.4

Q ss_pred             CccccCCCceEEEEecCCCcccccCCCceeeeec--CCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCC----
Q psy936           46 DSWLIIEQLRLPIEPTIPSFLFQDQKPMSWVTTN--NKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQ----  119 (344)
Q Consensus        46 ~~~~~l~g~~L~v~~~~P~~~~~~~~P~~~~~~~--~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~----  119 (344)
                      ++..+++|++|+|+      + ...+||.+...+  ..++...+.|+++||++++|+++||+++++..+++.||..    
T Consensus       376 ~~~~~~~~~~l~v~------~-~~~~P~~~~~~~~~~~~~~~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~  448 (823)
T 3kg2_A          376 DDTSGLEQKTVVVT------T-ILESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADT  448 (823)
T ss_dssp             CCCSSCCCCCEEEE------E-CCCTTTSEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTT
T ss_pred             CcccccCCCEEEEE------E-ecCCCcEEEecCccccCCCCceEEEHHHHHHHHHHHcCCcEEEEEccCCcccccCCCC
Confidence            56678999999999      6 567888765321  1123334569999999999999999999999998888873    


Q ss_pred             --chhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCCC-CCc
Q psy936          120 --DGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHES-ATG  196 (344)
Q Consensus       120 --~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~~-~~~  196 (344)
                        +.|++++|.+|++|+++++++++.+|.+                       .+|||.||..++.+++++++... ..+
T Consensus       449 g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~-----------------------~~dfs~py~~~~~~~~v~~~~~~~~~~  505 (823)
T 3kg2_A          449 KIWNGMVGELVYGKADIAIAPLTITLVREE-----------------------VIDFSKPFMSLGISIMIKKPQKSKPGV  505 (823)
T ss_dssp             CCBCHHHHHHHTTSCSEECSCCBCCHHHHT-----------------------TEEECSCSEEECEEEEEECCCCCCCCG
T ss_pred             CchhhHHHhhccccCcEEecceecchhhee-----------------------eEEeccchhhCCEEEEEECCCcccccc
Confidence              5699999999999999999999999999                       99999999999999999998754 477


Q ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC-------------CCcCchhHHHHHHHHHHcCCCCCCCC
Q psy936          197 SGLLAPFEIEVWFLILISLVLIGPIMHAIMRVRRWLSGTQS-------------ELYPISACTWFVYGALMKQGSTLNPR  263 (344)
Q Consensus       197 ~~~l~PF~~~vWl~il~~~i~~~~vl~~i~r~~~~~~~~~~-------------~~~~i~~~~~~~~~~ll~qg~~~~p~  263 (344)
                      +.+++||++.+|++++++++++++++|++.|+.+..|..+.             +.+++.+++|++++++++||.+..|+
T Consensus       506 ~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~p~  585 (823)
T 3kg2_A          506 FSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPR  585 (823)
T ss_dssp             GGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC------CC
T ss_pred             hHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHhcCCCcCCc
Confidence            89999999999999999999999999999998766554321             23458899999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHHHhhcccceeeeeecCCCCCCCCCHHHHhCCC-CcEEEEcCchhhHhhhhc
Q psy936          264 TDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFTLPIHSVEDIANPT-NTWCAEAGGAVEYSIKLY  330 (344)
Q Consensus       264 s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~~~I~TledL~~s~-~~~g~~~~~~~e~~l~~~  330 (344)
                      +.++|+++++|++++++++++|+|+|+|+||.+++.++|+|++||++++ +++|+..+++.+.++++.
T Consensus       586 ~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~  653 (823)
T 3kg2_A          586 SLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRS  653 (823)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHC
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999865 789999888888888763
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Back     alignment and structure
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Back     alignment and structure
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Back     alignment and structure
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A* Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 Back     alignment and structure
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Back     alignment and structure
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0 Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Back     alignment and structure
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1 Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
d2a5sa1277 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 99.51
d1pb7a_289 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 99.24
d1mqia_260 Glutamate receptor ligand binding core {Rat (Rattu 99.21
d2f34a1246 Glutamate receptor ligand binding core {Rat (Rattu 99.12
d1ii5a_226 Glutamate receptor ligand binding core {Synechocys 98.96
d1wdna_223 Glutamine-binding protein {Escherichia coli [TaxId 98.91
d1lsta_238 Lysine-,arginine-,ornithine-binding (LAO) protein 98.87
d1xt8a1248 Putative amino-acid transporter CjaA {Campylobacte 98.8
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 96.55
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 96.07
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 92.63
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 87.6
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: N-methyl-D-aspartate receptor subunit 1
species: Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]

Probab=99.51  E-value=1.3e-14  Score=132.74  Aligned_cols=100  Identities=13%  Similarity=0.193  Sum_probs=90.6

Q ss_pred             EEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCC----chhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHH
Q psy936           86 EGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQ----DGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELK  161 (344)
Q Consensus        86 ~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~----~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~  161 (344)
                      +..|+++||++.||+++|++++++..+++.||..    |+++++.|.+|++|+++++++++.+|.+              
T Consensus        52 ~~~G~~iDl~~~ia~~lg~~~e~~~v~~~~~g~~~~~~w~~~l~~l~~g~~Di~i~~~tit~eR~~--------------  117 (277)
T d2a5sa1          52 CCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSE--------------  117 (277)
T ss_dssp             EEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHT--------------
T ss_pred             ceeeeHHHHHHHHHHHhCCCEEEEEccCCCcCccCCCCHHHHHhhhhcccEEEEEEccEeehhhhh--------------
Confidence            4679999999999999999999999999888874    6799999999999999999999999999              


Q ss_pred             HHhhhccccEEEeceeeccceeEEEEeCCCCCCCcccccccchhhHH
Q psy936          162 LQLQQEEAMKWKWGIELGQSQYVVMMKRPHESATGSGLLAPFEIEVW  208 (344)
Q Consensus       162 ~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW  208 (344)
                               .++||.||+..+..++++++........+..|++...|
T Consensus       118 ---------~v~Fs~Py~~~~~~ilv~k~~~~~~~~~~~~~~~~~~~  155 (277)
T d2a5sa1         118 ---------VVDFSVPFVETGISVMVSRQVTGLSDKKFQRPHDYSPP  155 (277)
T ss_dssp             ---------TEEECCCCEEECEEEEEETCCCSTTSHHHHSGGGSSSC
T ss_pred             ---------hhcccCCceecceEEEEecCcccCChhHhcCccccchh
Confidence                     99999999999999999998877777778888876554
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Back     information, alignment and structure
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Back     information, alignment and structure
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure