Psyllid ID: psy9380

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEATADEDAEFDEEQEAEVDEN
cccEEEEEEccccccccccHHHHHHcccccccccccccccccccccEEEEEEEcccccEEEcEEEEccccccccccccccccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHcccccccccEEEEEEccccccccHHHHHHHHHHHHHccccccEEEEEcccccccccccEEEEEccccccccc
ccEEEEEEEccccHHHcHHHHHHHHHHcccccccccccccccccccEEEEEEcccccccccEEEEEEcccccHHHccccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccccccEEEEEEccccEccc
MREIVHIQagqcgnqiGAKFWEIisdehgidptgayhgdsdlqLERINVYYneasgskyvprailvdlepgtmdsvrsgpfgqifrpdnfvfgqsgagnnwakghytegaeLVDSVLDVVRKEAescdclqgfqlthslgggtgsgmGTLLISKIReeypdrimntysvvpspkeatadedaefdeeqeaevden
mreivhiqagqcgnqiGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNeasgskyvpRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFqlthslgggtgsGMGTLLISKIREEYPDRIMNtysvvpspkeatADEDAEfdeeqeaevden
MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQlthslgggtgsgmgtllisKIREEYPDRIMNTYSVVPSPKeatadedaefdeeqeaevdeN
***IVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYS***************************
MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEATADEDAEFDEEQEAEVD**
MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPS***********************
*REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEATADEDAEFDEEQEAEVD*N
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEATADEDAEFDEEQEAEVDEN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query195 2.2.26 [Sep-21-2011]
O17449 447 Tubulin beta-1 chain OS=M N/A N/A 0.892 0.389 0.994 1e-92
Q27U48 447 Tubulin beta-1 chain OS=G N/A N/A 0.892 0.389 0.982 2e-91
Q24560 447 Tubulin beta-1 chain OS=D yes N/A 0.892 0.389 0.982 2e-91
P30883 445 Tubulin beta-4 chain OS=X N/A N/A 0.892 0.391 0.965 3e-91
P02554 445 Tubulin beta chain OS=Sus yes N/A 0.892 0.391 0.965 3e-91
P85108 445 Tubulin beta-2A chain OS= yes N/A 0.892 0.391 0.959 5e-91
Q7TMM9 445 Tubulin beta-2A chain OS= yes N/A 0.892 0.391 0.959 5e-91
Q4R5B3 445 Tubulin beta-2A chain OS= N/A N/A 0.892 0.391 0.959 5e-91
Q13885 445 Tubulin beta-2A chain OS= yes N/A 0.892 0.391 0.959 5e-91
P32882 445 Tubulin beta-2 chain OS=G yes N/A 0.892 0.391 0.959 7e-91
>sp|O17449|TBB1_MANSE Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1 Back     alignment and function desciption
 Score =  338 bits (867), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 173/174 (99%), Positives = 173/174 (99%)

Query: 1   MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
           MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASG KYV
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 60

Query: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPK 174
           RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPK
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPK 174
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Manduca sexta (taxid: 7130)
>sp|Q27U48|TBB1_GLOMM Tubulin beta-1 chain OS=Glossina morsitans morsitans PE=2 SV=1 Back     alignment and function description
>sp|Q24560|TBB1_DROME Tubulin beta-1 chain OS=Drosophila melanogaster GN=betaTub56D PE=1 SV=2 Back     alignment and function description
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE=2 SV=1 Back     alignment and function description
>sp|P02554|TBB_PIG Tubulin beta chain OS=Sus scrofa PE=1 SV=1 Back     alignment and function description
>sp|P85108|TBB2A_RAT Tubulin beta-2A chain OS=Rattus norvegicus GN=Tubb2a PE=1 SV=1 Back     alignment and function description
>sp|Q7TMM9|TBB2A_MOUSE Tubulin beta-2A chain OS=Mus musculus GN=Tubb2a PE=1 SV=1 Back     alignment and function description
>sp|Q4R5B3|TBB2A_MACFA Tubulin beta-2A chain OS=Macaca fascicularis GN=TUBB2A PE=2 SV=1 Back     alignment and function description
>sp|Q13885|TBB2A_HUMAN Tubulin beta-2A chain OS=Homo sapiens GN=TUBB2A PE=1 SV=1 Back     alignment and function description
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
359843284 424 beta-tubulin, partial [Schistocerca greg 0.892 0.410 0.988 2e-99
109290430 443 beta tubulin [Culex pipiens pipiens] 0.892 0.392 0.982 1e-98
188529361189 beta-tubulin [Drosophila silvestris] 0.892 0.920 0.982 1e-97
156389348 442 predicted protein [Nematostella vectensi 0.871 0.384 0.919 5e-92
74223737 444 unnamed protein product [Mus musculus] 0.892 0.391 0.954 3e-91
3399724 447 beta-tubulin [Bombyx mori] 0.892 0.389 0.994 5e-91
164683616 447 beta1-tubulin [Monochamus alternatus] 0.871 0.380 0.994 6e-91
91086093 447 PREDICTED: similar to beta1-tubulin [Tri 0.871 0.380 0.994 6e-91
12585365 447 RecName: Full=Tubulin beta-1 chain; AltN 0.892 0.389 0.994 7e-91
112983318 447 beta-tubulin [Bombyx mori] gi|19773428|d 0.892 0.389 0.994 7e-91
>gi|359843284|gb|AEV89777.1| beta-tubulin, partial [Schistocerca gregaria] Back     alignment and taxonomy information
 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 172/174 (98%), Positives = 173/174 (99%)

Query: 1   MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
           MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASG KYV
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 60

Query: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAILVDLEPGTMDSVRSGPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPK 174
           RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPK
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPK 174

Source: Schistocerca gregaria

Species: Schistocerca gregaria

Genus: Schistocerca

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|109290430|gb|ABG29421.1| beta tubulin [Culex pipiens pipiens] Back     alignment and taxonomy information
>gi|188529361|gb|ACD62426.1| beta-tubulin [Drosophila silvestris] Back     alignment and taxonomy information
>gi|156389348|ref|XP_001634953.1| predicted protein [Nematostella vectensis] gi|156222042|gb|EDO42890.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|74223737|dbj|BAE28709.1| unnamed protein product [Mus musculus] Back     alignment and taxonomy information
>gi|3399724|dbj|BAA32102.1| beta-tubulin [Bombyx mori] Back     alignment and taxonomy information
>gi|164683616|gb|ABY66392.1| beta1-tubulin [Monochamus alternatus] Back     alignment and taxonomy information
>gi|91086093|ref|XP_967267.1| PREDICTED: similar to beta1-tubulin [Tribolium castaneum] gi|270010215|gb|EFA06663.1| hypothetical protein TcasGA2_TC009589 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|12585365|sp|O17449.1|TBB1_MANSE RecName: Full=Tubulin beta-1 chain; AltName: Full=Beta-1-tubulin gi|2613141|gb|AAB84297.1| beta-1 tubulin [Manduca sexta] Back     alignment and taxonomy information
>gi|112983318|ref|NP_001036964.1| beta-tubulin [Bombyx mori] gi|19773428|dbj|BAB86853.1| beta-tubulin [Bombyx mori] gi|389608419|dbj|BAM17819.1| beta-tubulin [Papilio xuthus] gi|389611111|dbj|BAM19166.1| beta-tubulin [Papilio polytes] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
FB|FBgn0003887 447 betaTub56D "beta-Tubulin at 56 0.892 0.389 0.873 3.7e-80
UNIPROTKB|P02554 445 P02554 "Tubulin beta chain" [S 0.892 0.391 0.856 9.7e-80
UNIPROTKB|F1NYB1 444 TUBB3 "Uncharacterized protein 0.892 0.391 0.850 1.6e-79
UNIPROTKB|G1K342 445 TUBB3 "Uncharacterized protein 0.892 0.391 0.850 1.6e-79
UNIPROTKB|Q3MHM5 445 TUBB4B "Tubulin beta-4B chain" 0.892 0.391 0.850 1.6e-79
UNIPROTKB|L7N0I7 445 TUBB4B "Uncharacterized protei 0.892 0.391 0.850 1.6e-79
UNIPROTKB|P68371 445 TUBB4B "Tubulin beta-4B chain" 0.892 0.391 0.850 1.6e-79
UNIPROTKB|F2Z571 445 TUBB4B "Uncharacterized protei 0.892 0.391 0.850 1.6e-79
MGI|MGI:1915472 445 Tubb4b "tubulin, beta 4B class 0.892 0.391 0.850 1.6e-79
RGD|735101 445 Tubb4b "tubulin, beta 4B class 0.892 0.391 0.850 1.6e-79
FB|FBgn0003887 betaTub56D "beta-Tubulin at 56D" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 152/174 (87%), Positives = 153/174 (87%)

Query:     1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
             MREIVHIQAGQCGNQIGAKFWEIISDEHGID TGAYHGDSDLQLERINVYYNEASG KYV
Sbjct:     1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDATGAYHGDSDLQLERINVYYNEASGGKYV 60

Query:    61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
             PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct:    61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query:   121 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 174
             RKEAESCDCLQGFQ                   KIREEYPDRIMNTYSVVPSPK
Sbjct:   121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPK 174
GO:0005200 "structural constituent of cytoskeleton" evidence=IEA;IC;ISS
GO:0007017 "microtubule-based process" evidence=ISS
GO:0045298 "tubulin complex" evidence=ISS
GO:0005525 "GTP binding" evidence=ISS
GO:0016203 "muscle attachment" evidence=TAS
GO:0005874 "microtubule" evidence=ISS;NAS;IDA
GO:0003924 "GTPase activity" evidence=IEA
GO:0006184 "GTP catabolic process" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0051298 "centrosome duplication" evidence=IMP
UNIPROTKB|P02554 P02554 "Tubulin beta chain" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYB1 TUBB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G1K342 TUBB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MHM5 TUBB4B "Tubulin beta-4B chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|L7N0I7 TUBB4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P68371 TUBB4B "Tubulin beta-4B chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z571 TUBB4B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1915472 Tubb4b "tubulin, beta 4B class IVB" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|735101 Tubb4b "tubulin, beta 4B class IVb" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P85108TBB2A_RATNo assigned EC number0.95970.89230.3910yesN/A
Q9YHC3TBB1_GADMONo assigned EC number0.94820.89230.3910N/AN/A
P33188TBB1_PARTENo assigned EC number0.90800.89230.3936N/AN/A
Q4R5B3TBB2A_MACFANo assigned EC number0.95970.89230.3910N/AN/A
Q13885TBB2A_HUMANNo assigned EC number0.95970.89230.3910yesN/A
Q6P9T8TBB4B_RATNo assigned EC number0.95970.89230.3910yesN/A
P68372TBB4B_MOUSENo assigned EC number0.95970.89230.3910yesN/A
P32882TBB2_CHICKNo assigned EC number0.95970.89230.3910yesN/A
P04350TBB4A_HUMANNo assigned EC number0.94250.89230.3918yesN/A
Q2KJD0TBB5_BOVINNo assigned EC number0.95970.89230.3918yesN/A
P99024TBB5_MOUSENo assigned EC number0.95970.89230.3918yesN/A
Q24560TBB1_DROMENo assigned EC number0.98270.89230.3892yesN/A
P02554TBB_PIGNo assigned EC number0.96550.89230.3910yesN/A
Q7JJU6TBB5_PANTRNo assigned EC number0.95970.89230.3918yesN/A
Q5R943TBB5_PONABNo assigned EC number0.95970.89230.3918yesN/A
Q3KRE8TBB2B_RATNo assigned EC number0.95970.89230.3910yesN/A
P69897TBB5_RATNo assigned EC number0.95970.89230.3918yesN/A
Q6B856TBB2B_BOVINNo assigned EC number0.95970.89230.3910noN/A
Q27U48TBB1_GLOMMNo assigned EC number0.98270.89230.3892N/AN/A
P41937TBB4_CAEELNo assigned EC number0.94250.89230.3918yesN/A
P09206TBB3_CHICKNo assigned EC number0.95400.89230.3910yesN/A
P69893TBB5_CRIGRNo assigned EC number0.95970.89230.3918yesN/A
P09203TBB1_CHICKNo assigned EC number0.95970.89230.3910yesN/A
P69895TBB5_MACMUNo assigned EC number0.95970.89230.3918noN/A
P68371TBB4B_HUMANNo assigned EC number0.95970.89230.3910yesN/A
O44388TBB_TRITRNo assigned EC number0.93670.89230.3918N/AN/A
P10876TBB_TETPYNo assigned EC number0.90800.89230.3927N/AN/A
Q3ZBU7TBB4A_BOVINNo assigned EC number0.94250.89230.3918noN/A
P09244TBB7_CHICKNo assigned EC number0.95970.89230.3918yesN/A
O17449TBB1_MANSENo assigned EC number0.99420.89230.3892N/AN/A
Q9NFZ6TBB2_ECHMUNo assigned EC number0.96550.89230.3910N/AN/A
Q767L7TBB5_PIGNo assigned EC number0.95970.89230.3918yesN/A
Q6GLE7TBB5_XENTRNo assigned EC number0.95970.89230.3918yesN/A
Q4R4X8TBB4A_MACFANo assigned EC number0.94250.89230.3918N/AN/A
P11833TBB_PARLINo assigned EC number0.95970.89230.3892N/AN/A
P41352TBB_TETTHNo assigned EC number0.90800.89230.3927N/AN/A
Q9BVA1TBB2B_HUMANNo assigned EC number0.95970.89230.3910yesN/A
Q9CWF2TBB2B_MOUSENo assigned EC number0.95970.89230.3910yesN/A
Q91240TBB_PSEAMNo assigned EC number0.93100.89230.3910N/AN/A
Q91575TBB5_XENLANo assigned EC number0.95970.89230.3918N/AN/A
P07436TBB1_PHYPONo assigned EC number0.91950.89230.3725N/AN/A
P07437TBB5_HUMANNo assigned EC number0.95970.89230.3918yesN/A
P13602TBB2_XENLANo assigned EC number0.94820.89230.3927N/AN/A
Q3MHM5TBB4B_BOVINNo assigned EC number0.95970.89230.3910noN/A
Q9D6F9TBB4A_MOUSENo assigned EC number0.94250.89230.3918yesN/A
P30883TBB4_XENLANo assigned EC number0.96550.89230.3910N/AN/A
Q7TMM9TBB2A_MOUSENo assigned EC number0.95970.89230.3910yesN/A
P36221TBB1_NOTCONo assigned EC number0.94820.89230.3901N/AN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
cd02187 425 cd02187, beta_tubulin, The tubulin superfamily inc 1e-144
PLN00220 447 PLN00220, PLN00220, tubulin beta chain; Provisiona 1e-140
PTZ00010 445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 1e-138
COG5023 443 COG5023, COG5023, Tubulin [Cytoskeleton] 1e-110
cd02188 431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 1e-66
cd06059 382 cd06059, Tubulin, The tubulin superfamily includes 6e-62
cd00286 328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 2e-61
cd02186 434 cd02186, alpha_tubulin, The tubulin superfamily in 3e-60
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 2e-58
PTZ00335 448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 3e-58
PLN00222 454 PLN00222, PLN00222, tubulin gamma chain; Provision 5e-55
PLN00221 450 PLN00221, PLN00221, tubulin alpha chain; Provision 1e-54
PTZ00387 465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 1e-50
cd02190 379 cd02190, epsilon_tubulin, The tubulin superfamily 1e-49
cd02189 446 cd02189, delta_tubulin, The tubulin superfamily in 3e-49
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 5e-40
cd06060 493 cd06060, misato, Human Misato shows similarity wit 1e-07
cd02202 349 cd02202, FtsZ_type2, FtsZ is a GTPase that is simi 5e-05
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information 
 Score =  407 bits (1048), Expect = e-144
 Identities = 162/173 (93%), Positives = 168/173 (97%)

Query: 2   REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVP 61
           REIVHIQAGQCGNQIGAKFWE+ISDEHG+DPTG Y GDSDLQLERINVY+NEASG KYVP
Sbjct: 1   REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVP 60

Query: 62  RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 121
           RAILVDLEPGTMDSVRSGPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVR
Sbjct: 61  RAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 120

Query: 122 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPK 174
           KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM T+SV PSPK
Sbjct: 121 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPK 173

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 425
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 195
COG5023 443 Tubulin [Cytoskeleton] 100.0
PLN00221 450 tubulin alpha chain; Provisional 100.0
KOG1374|consensus 448 100.0
PTZ00335 448 tubulin alpha chain; Provisional 100.0
PLN00220 447 tubulin beta chain; Provisional 100.0
PLN00222 454 tubulin gamma chain; Provisional 100.0
cd02188 431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
PTZ00010 445 tubulin beta chain; Provisional 100.0
cd02186 434 alpha_tubulin The tubulin superfamily includes fiv 100.0
PTZ00387 465 epsilon tubulin; Provisional 100.0
cd02187 425 beta_tubulin The tubulin superfamily includes five 100.0
cd02189 446 delta_tubulin The tubulin superfamily includes fiv 100.0
KOG1376|consensus 407 100.0
cd02190 379 epsilon_tubulin The tubulin superfamily includes f 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
cd06059 382 Tubulin The tubulin superfamily includes five dist 100.0
cd00286 328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
cd06060 493 misato Human Misato shows similarity with Tubulin/ 100.0
KOG2530|consensus 483 99.97
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 99.91
KOG1375|consensus 369 99.88
cd02202 349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.79
PF14881180 Tubulin_3: Tubulin domain 99.73
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 99.61
cd02191 303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.38
cd02201 304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.16
TIGR00065 349 ftsZ cell division protein FtsZ. This family consi 99.15
PRK13018 378 cell division protein FtsZ; Provisional 98.96
PRK09330 384 cell division protein FtsZ; Validated 98.75
COG0206 338 FtsZ Cell division GTPase [Cell division and chrom 97.14
PF13809 345 Tubulin_2: Tubulin like 96.98
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=6.8e-72  Score=478.86  Aligned_cols=183  Identities=57%  Similarity=1.083  Sum_probs=179.8

Q ss_pred             CeeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCC
Q psy9380           1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGP   80 (195)
Q Consensus         1 M~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~   80 (195)
                      |||||+||+||||||||++||+++|.||||+++|.+++.++.+.++.++||+|++.+||+||||+|||||+||+.+++++
T Consensus         1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~   80 (443)
T COG5023           1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP   80 (443)
T ss_pred             CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence            99999999999999999999999999999999999888777777899999999999999999999999999999999999


Q ss_pred             CccccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcC
Q psy9380          81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP  160 (195)
Q Consensus        81 ~~~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~  160 (195)
                      |+.+|+|+|++++|+|||||||+|+|+.|+++.+.++|+|||++|.||.||||+++||++|||||||||.||++|++|||
T Consensus        81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp  160 (443)
T COG5023          81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP  160 (443)
T ss_pred             cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceEEEEecCCCCCCcccccc
Q psy9380         161 DRIMNTYSVVPSPKEATADEDAE  183 (195)
Q Consensus       161 k~~i~~~~v~P~~~~~~~v~~~~  183 (195)
                      ||.+.+|+|||+|++|++|||||
T Consensus       161 kK~~~tfSV~P~p~~Sd~VVePY  183 (443)
T COG5023         161 KKIKLTFSVFPAPKVSDVVVEPY  183 (443)
T ss_pred             hhheeEEEeccCCccCcceeccc
Confidence            99999999999999999999998

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>KOG2530|consensus Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
1z2b_B 445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 2e-87
1ffx_B 445 Tubulin:stathmin-Like Domain Complex Length = 445 3e-87
2xrp_A 445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 3e-87
1tub_B 427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 3e-87
3du7_B 445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 4e-87
4f61_B 445 Tubulin:stathmin-Like Domain Complex Length = 445 4e-87
3ryc_B 445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 4e-87
4drx_B 431 Gtp-Tubulin In Complex With A Darpin Length = 431 4e-87
4i4t_B 445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 5e-87
4ffb_B 463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 3e-65
1tub_A 440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 1e-31
2xrp_B 452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 1e-31
1jff_A 451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 1e-31
1ffx_A 451 Tubulin:stathmin-Like Domain Complex Length = 451 1e-31
1sa0_A 451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 1e-31
3du7_A 449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 1e-31
3ryc_A 451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 2e-31
4drx_A 437 Gtp-Tubulin In Complex With A Darpin Length = 437 2e-31
3hkb_A 451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 2e-31
1z2b_A 448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 2e-31
4i4t_A 450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 2e-31
4ffb_A 447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 1e-30
2btq_B 426 Structure Of Btubab Heterodimer From Prosthecobacte 2e-30
1z5v_A 474 Crystal Structure Of Human Gamma-Tubulin Bound To G 6e-30
3cb2_A 475 Crystal Structure Of Human Gamma-Tubulin Bound To G 6e-30
2bto_A 473 Structure Of Btuba From Prosthecobacter Dejongeii L 7e-20
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure 
Iteration: 1

 Score =  318 bits (814), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 149/174 (85%), Positives = 155/174 (89%)
Query: 1   MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
           MREIVHIQAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 174
           RKE+ESCDCLQGFQ                   KIREEYPDRIMNT+SVVPSPK
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPK 174
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
3ryc_A 451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 1e-116
3ryc_B 445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 1e-115
2btq_B 426 Tubulin btubb; structural protein, cytoskeletal pr 1e-114
3cb2_A 475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 1e-111
2bto_A 473 Tubulin btuba; bacterial tubulin, polymerization, 1e-111
3v3t_A 360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 2e-05
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
 Score =  335 bits (862), Expect = e-116
 Identities = 78/180 (43%), Positives = 112/180 (62%), Gaps = 2/180 (1%)

Query: 1   MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSK 58
           MRE + I  GQ G QIG   WE+   EHGI P G    D  +    +  N +++E    K
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 59  YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
           +VPRA+ VDLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E++D VLD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 119 VVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEATA 178
            +RK A+ C  LQGF + HS GGGTGSG  +LL+ ++  +Y  +    +S+ P+P+ +TA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
3ryc_B 445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3ryc_A 451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
2btq_B 426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
3cb2_A 475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2bto_A 473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
3m89_A 427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 99.86
1w5f_A 353 Cell division protein FTSZ; complete proteome, GTP 99.82
1rq2_A 382 Cell division protein FTSZ; cell cycle, tubulin, G 99.8
2vap_A 364 FTSZ, cell division protein FTSZ homolog 1; polyme 99.79
1ofu_A 320 FTSZ, cell division protein FTSZ; bacterial cell d 99.79
2vaw_A 394 FTSZ, cell division protein FTSZ; bacterial cell d 99.78
2vxy_A 382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 99.77
2r75_1 338 Cell division protein FTSZ; GTPase, tubulin-like, 99.76
3v3t_A 360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.68
4dxd_A 396 Cell division protein FTSZ; rossmann fold, GTPase, 99.37
4ei7_A 389 Plasmid replication protein REPX; GTP hydrolase, p 98.5
3r4v_A 315 Putative uncharacterized protein; tubulin, unknown 96.03
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
Probab=100.00  E-value=2.6e-65  Score=456.41  Aligned_cols=183  Identities=91%  Similarity=1.456  Sum_probs=178.7

Q ss_pred             CeeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCchhhccccceeeccCCCccccceEEecCCCCeeeccccCC
Q psy9380           1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRSGP   80 (195)
Q Consensus         1 M~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~~~   80 (195)
                      |||||+||+||||||||++||+++|.||+|+++|.+.++++++.+++++||+|++.++|+||||||||||+||++|+.++
T Consensus         1 mrEii~i~vGQcGnQiG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRavlvDlEp~vid~i~~g~   80 (445)
T 3ryc_B            1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGP   80 (445)
T ss_dssp             CCEEEEEEEHHHHHHHHHHHHHHHHHHTTBCTTSBBCCSCTHHHHTGGGTEEECSTTBEEECEEEEESSSHHHHHHHTST
T ss_pred             CceEEEEecCCcHHHHHHHHHHHHHHHhCCCCCCCccCCccccccchhhccccCCCCccccceeEecCCchhhhhhhccc
Confidence            99999999999999999999999999999999999988888778899999999999999999999999999999999999


Q ss_pred             CccccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHHcC
Q psy9380          81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP  160 (195)
Q Consensus        81 ~~~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~dey~  160 (195)
                      |+.+|+|+|++++++|||||||+|||+.|+++.+.++|+|||++|+||.||||+++||++||||||+|+.|+++|+++||
T Consensus        81 ~~~lf~p~~~i~g~~gAgNN~A~G~yt~G~e~~d~v~d~IRk~~E~cd~lqGf~i~hSlgGGTGSG~gs~lle~L~~ey~  160 (445)
T 3ryc_B           81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP  160 (445)
T ss_dssp             TGGGSCGGGEEECSSCCTTCHHHHHHSHHHHHHHHHHHHHHHHHHTCSSEEEEEEEEESSSSHHHHHHHHHHHHHHHHCT
T ss_pred             ccceecccceEEccccccCCccccchhhhHHHHHHHHHHHHHHHHcCCccceEEEEeecCCCCCCcHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceEEEEecCCCCCCcccccc
Q psy9380         161 DRIMNTYSVVPSPKEATADEDAE  183 (195)
Q Consensus       161 k~~i~~~~v~P~~~~~~~v~~~~  183 (195)
                      |+.+++++|+|++++++++|++|
T Consensus       161 kk~~~~~sV~Psp~~s~~vvepY  183 (445)
T 3ryc_B          161 DRIMNTFSVMPSPKVSDTVVEPY  183 (445)
T ss_dssp             TSEEEEEEEECCGGGCSCTTHHH
T ss_pred             ccccceEEEEeCCccccccccch
Confidence            99999999999999899888875
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 195
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 1e-95
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 2e-86
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 8e-78
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  276 bits (706), Expect = 1e-95
 Identities = 168/178 (94%), Positives = 175/178 (98%)

Query: 1   MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
           MREIVHIQAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60

Query: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKEATA 178
           RKE+ESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNT+SVVPSPK +  
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 97.99
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 97.83
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 97.63
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 97.35
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=7.4e-66  Score=427.28  Aligned_cols=183  Identities=43%  Similarity=0.788  Sum_probs=175.0

Q ss_pred             CeeEEEEecCchhHHHHHHHHHHHHHhcCCCCCCCcCCCCc--hhhccccceeeccCCCccccceEEecCCCCeeecccc
Q psy9380           1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSD--LQLERINVYYNEASGSKYVPRAILVDLEPGTMDSVRS   78 (195)
Q Consensus         1 M~EiI~iq~Gq~GnqIG~~~W~~~~~e~~i~~~g~~~~~~~--~~~~~~~~~f~e~~~~~~~PRai~vDle~~~i~~i~~   78 (195)
                      |||||+||+||||||||.+||++++.||+|+++|....++.  ..+..+++||+|.++++|+||||+||+||++|+++++
T Consensus         1 MrEII~iqvGQcGnQIG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRavlvD~E~~vI~~i~~   80 (245)
T d1tuba1           1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (245)
T ss_dssp             CCCCCEECCSHHHHHHHHHHHHHHTTTCCTTTCCCCSCCTTSSTTCCCSCCSSCSSSCTTTSCSCCEEESSHHHHHHHSG
T ss_pred             CCcEEEEeccCHHHHHHHHHHHHHHHHhCcCCCCCccCccccccccccchhhhhcccCCccccceeEecCCcceeeeecc
Confidence            99999999999999999999999999999999998765443  3466789999999999999999999999999999999


Q ss_pred             CCCccccCCCceeeccCCCCccCCCCCcccchhhhHHHHHHhhhhhhccccccceeeEeecCCCcCCcchHHHHHHhHHH
Q psy9380          79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREE  158 (195)
Q Consensus        79 ~~~~~lf~p~~~~~~~~~s~nn~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~L~de  158 (195)
                      ++++++|+|++++++++|+|||||+|||..|+++.+.++|.|||++|+||+||||+++||++||||||+||+++++|+|+
T Consensus        81 ~~~~~~f~~~~~i~~~~gsgNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~i~hSl~GGTGSGlGs~l~e~l~d~  160 (245)
T d1tuba1          81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVD  160 (245)
T ss_dssp             GGCSCCCCSSSEEECCSCCCCSSSTTTTSHHHHTTHHHHHHHHHHTTSSSCCCCEEEECCSSCGGGTHHHHHHTHHHHHH
T ss_pred             CcchhccCccccccCCCCcccchHhhhhccchhhHHHHHHHHHHHHHhCCCcCceeeeeecCCcCcCchhHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccceEEEEecCCCCCCcccccc
Q psy9380         159 YPDRIMNTYSVVPSPKEATADEDAE  183 (195)
Q Consensus       159 y~k~~i~~~~v~P~~~~~~~v~~~~  183 (195)
                      ||++.+++++|+|++..+++||++|
T Consensus       161 yp~~~~~~~~V~P~~~~~~~vvqpY  185 (245)
T d1tuba1         161 YGKKSKLEFSIYPAPQVSTAVVEPY  185 (245)
T ss_dssp             TTTSCEEEEECCCCSSCSTTTTHHH
T ss_pred             cccccccceEEeccccCCCcccccc
Confidence            9999999999999998899998876
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure