Psyllid ID: psy9568

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MRLNVAVVSLMTILLFVSGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTCSQRSDSGEDKSTFYHDDEEGPPVRNLYSSLLGSDSGEDKSTFYHDDEEGPPVRNKPRRRKIFV
Secondary Structure (PSIPRED)
cEEEEccccccccccccccccccccccccEEccccEEEcccccccccccccccccccccccEEccccEEEcccccccccccccccccccccccEEcccccEEcccccccccccccccccccccccccccccEEcccccEEccccccccccccccccccccccccccEEccccEEEcccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccEEccccEEEcccccccccccccccccccccccEEccccEEEcccccccccccccccccccccccEEccccEEEcccccccccccccccccccccccccccccEEccccEEEcccccccccccccccccccccccccccEccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MRLNVAVVSLMTILLFVSGICtekclnggkcvqkdtcecqkgfyglrcefcictekclnggkcvqkdtcecqkgfyglrcefskciipclnggrckgvnkcrcppgflgdyceiwqrpyiskciipclnggrckgvnkcrcppgflgdyceiwqrpyicpkpckqgvcsaartcacyegwfgrtcsqrsdsgedkstfyhddeegppvrNLYSSllgsdsgedkstfyhddeegppvrnkprrrkifv
Flexible Loop (DISEMBL)
MRLNVAVVSLMTILLFVSGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTCSQRSDSGEDKSTfyhddeegppvRNLYSSLLGSDSGEDKSTfyhddeegppvrnkprrrkifv
Low Complexity Region (SEG)
MRLNVAVVSLMTILLFVSGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTCSQRSDSGEDKSTFYHDDEEGPPVRNLYSSLLGSDSGEDKSTFYHDDEEGPPVRNKPRRRKIFV
Disordered region (IsUnstruct)
***NVAVVSLMTILLFVSGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTC***************************************************************
Disordered Region (DISOPRED)
MRLNVAVVSLMTILLFVSGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTCSQRSDSGEDKSTFYHDDEEGPPVRNLYSSLLGSDSGEDKSTFYHDDEEGPPVRNKPRRRKIFV
Disordered Region (DISEMBL)
MRLNVAVVSLMTILLFVSGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTC****************DEEGPPVRNLYSSLLGSDSGEDKS***********************
Disordered Region (DISPRO)
MRLNVAVVSLMTILLFVSGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTCSQRSDSGEDKSTFYHDDEEGPPVRNLYSSLLGSDSGEDKSTFYHDDEEGPPVRNKPRRRKIFV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRLNVAVVSLMTILLFVSGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTCSQRSDSGEDKSTFYHDDEEGPPVRNLYSSLLGSDSGEDKSTFYHDDEEGPPVRNKPRRRKIFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
Q9W3W5	456	Protein shifted OS=Drosop	yes	N/A	0.552	0.300	0.503	1e-32
Q9Y5W5	379	Wnt inhibitory factor 1 O	yes	N/A	0.766	0.501	0.399	4e-31
Q9WUA1	379	Wnt inhibitory factor 1 O	yes	N/A	0.641	0.419	0.446	5e-31
Q6IN38	379	Wnt inhibitory factor 1 O	yes	N/A	0.641	0.419	0.446	6e-31
Q9W6F8	374	Wnt inhibitory factor 1 O	N/A	N/A	0.721	0.478	0.408	3e-30
Q9W6F9	378	Wnt inhibitory factor 1 O	yes	N/A	0.669	0.439	0.429	4e-30
Q8N2E2	1590	von Willebrand factor D a	no	N/A	0.633	0.098	0.385	8e-24
Q8TER0	1413	Sushi, nidogen and EGF-li	no	N/A	0.673	0.118	0.340	2e-17
Q5ZQU0	1403	Sushi, nidogen and EGF-li	no	N/A	0.673	0.119	0.327	2e-16
P98157	4543	Low-density lipoprotein r	no	N/A	0.653	0.035	0.346	3e-16

>sp|Q9W3W5|WIF1_DROME Protein shifted OS=Drosophila melanogaster GN=shf PE=1 SV=2

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/141 (50%), Positives = 91/141 (64%), Gaps = 4/141 (2%)

Query: 18  SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYG 77
           +  C  +CLNGG C     C C +G+ G +CE  IC +KCLNGGKC+QKD C+C KG+YG
Sbjct: 312 TAFCFPQCLNGGNCTAPSVCTCPEGYQGTQCEGGICKDKCLNGGKCIQKDKCQCSKGYYG 371

Query: 78  LRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVN 137
           LRCE+SKC+IPC N GRC G N CRCP G  GD+CEI ++    + I  C N G C    
Sbjct: 372 LRCEYSKCVIPCKNEGRCIGNNLCRCPNGLRGDHCEIGRK---QRSICKCRN-GTCVSHK 427

Query: 138 KCRCPPGFLGDYCEIWQRPYI 158
            C+C PGF G +C   +R ++
Sbjct: 428 HCKCHPGFYGRHCNGRKRRHV 448

Required for normal accumulation and movement of lipid-modified hedgehog (hh) morphogen. May act by stabilizing the interaction between heparan sulfate proteoglycans (HSPGs) and hh, HSPGs being required for diffusion of hh morphogen. Not involved in wingless (wg) morphogen movement, suggesting that it may provide HSPG specificity for Hh.
Drosophila melanogaster (taxid: 7227)

>sp|Q9Y5W5|WIF1_HUMAN Wnt inhibitory factor 1 OS=Homo sapiens GN=WIF1 PE=1 SV=3

 Score =  134 bits (338), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/203 (39%), Positives = 104/203 (51%), Gaps = 13/203 (6%)

Query: 21  CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
           C   C NGG C ++  CEC  GF+G  CE  +CT +C+NGG CV    C C  GFYG+ C
Sbjct: 182 CPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNC 241

Query: 81  EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCR 140
           + + C   C NGG C    KC CPPG  G+ CE      ISKC  PC NGG+C G +KC+
Sbjct: 242 DKANCSTTCFNGGTCFYPGKCICPPGLEGEQCE------ISKCPQPCRNGGKCIGKSKCK 295

Query: 141 CPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTCSQRSDSGEDKSTFYH 200
           C  G+ GD C    +P   P     G C     C C EGW GR C++R ++    S  + 
Sbjct: 296 CSKGYQGDLCS---KPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEA----SLIHA 348

Query: 201 DDEEGPPVRNLYSSLLGSDSGED 223
               G  +R    SL  ++   D
Sbjct: 349 LRPAGAQLRQHTPSLKKAEERRD 371

Binds to WNT proteins and inhibits their activities. May be involved in mesoderm segmentation.

Homo sapiens (taxid: 9606)

>sp|Q9WUA1|WIF1_MOUSE Wnt inhibitory factor 1 OS=Mus musculus GN=Wif1 PE=2 SV=1

 Score =  134 bits (338), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 92/168 (54%), Gaps = 9/168 (5%)

Query: 21  CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
           C   C NGG C ++  CEC  GFYG  CE  +C  +C+NGG CV    C C  GFYG+ C
Sbjct: 182 CPGGCRNGGFCNERRVCECPDGFYGPHCEKALCIPRCMNGGLCVTPGFCICPPGFYGVNC 241

Query: 81  EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCR 140
           + + C   C NGG C    KC CPPG  G+ CE      +SKC  PC NGG+C G +KC+
Sbjct: 242 DKANCSTTCFNGGTCFYPGKCICPPGLEGEQCE------LSKCPQPCRNGGKCIGKSKCK 295

Query: 141 CPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTCSQR 188
           CP G+ GD C    +P   P     G C     C C EGW GR C++R
Sbjct: 296 CPKGYQGDLCS---KPVCEPGCGAHGTCHEPNKCQCREGWHGRHCNKR 340

Binds to WNT proteins and inhibits their activities. May be involved in mesoderm segmentation.

Mus musculus (taxid: 10090)

>sp|Q6IN38|WIF1_RAT Wnt inhibitory factor 1 OS=Rattus norvegicus GN=Wif1 PE=2 SV=1

 Score =  134 bits (337), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 92/168 (54%), Gaps = 9/168 (5%)

Query: 21  CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
           C   C NGG C ++  CEC  GFYG  CE  +C  +C+NGG CV    C C  GFYG+ C
Sbjct: 182 CPGGCRNGGFCNERRVCECPDGFYGPHCEKALCIPRCMNGGLCVTPGFCICPPGFYGVNC 241

Query: 81  EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCR 140
           + + C   C NGG C    KC CPPG  G+ CE      +SKC  PC NGG+C G +KC+
Sbjct: 242 DKANCSATCFNGGTCFYPGKCICPPGLEGEQCE------LSKCPQPCRNGGKCIGKSKCK 295

Query: 141 CPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTCSQR 188
           CP G+ GD C    +P   P     G C     C C EGW GR C++R
Sbjct: 296 CPKGYQGDLCS---KPVCEPGCGAHGTCHEPNKCQCREGWHGRHCNKR 340

Binds to WNT proteins and inhibits their activities. May be involved in mesoderm segmentation.

Rattus norvegicus (taxid: 10116)

>sp|Q9W6F8|WIF1_XENLA Wnt inhibitory factor 1 OS=Xenopus laevis GN=wif1 PE=2 SV=1

 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 98/191 (51%), Gaps = 12/191 (6%)

Query: 4   NVAVVSLMTILLFVS---GICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNG 60
           NV + +    + F +     CT  C NGG C  +  CEC  GFYG  CE  +C  +C+NG
Sbjct: 157 NVILQTPQNAIFFKTCQQAKCTGGCRNGGFCNDRHVCECPDGFYGPHCEKALCMPRCMNG 216

Query: 61  GKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYI 120
           G CV    C C  G+YG+ C+   C   CLNGG C    KC CP G+ G+ CE       
Sbjct: 217 GLCVTPGLCICPPGYYGINCDKVNCTTHCLNGGTCFYPGKCICPSGYEGEQCE------T 270

Query: 121 SKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGW 180
           SKC  PC NGG+C G NKC+C  G+ GD C    +P   P     G C     C C EGW
Sbjct: 271 SKCQQPCRNGGKCSGKNKCKCSKGYQGDLCS---KPVCEPSCGAHGTCIEPNKCQCKEGW 327

Query: 181 FGRTCSQRSDS 191
            GR C+++  S
Sbjct: 328 NGRYCNKKYGS 338

Binds to WNT proteins and inhibits their activities. May be involved in mesoderm segmentation.

Xenopus laevis (taxid: 8355)

>sp|Q9W6F9|WIF1_DANRE Wnt inhibitory factor 1 OS=Danio rerio GN=wif1 PE=2 SV=1

 Score =  131 bits (330), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/177 (42%), Positives = 93/177 (52%), Gaps = 11/177 (6%)

Query: 21  CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
           C   C NGG C ++  CECQ GFYG+ CE  +C+ +CLNGG C+    C C  G++G  C
Sbjct: 180 CPGGCRNGGYCNERQVCECQDGFYGVHCEKALCSPRCLNGGLCMSPGVCICPPGYFGSSC 239

Query: 81  EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCR 140
           E + C   CLNGG C    KC C   F G  CE      +SKC  PC NGG+C G NKC+
Sbjct: 240 ERANCSTTCLNGGTCFHPGKCICAVSFEGVRCE------LSKCRQPCRNGGKCTGRNKCK 293

Query: 141 CPPGFLGDYCEIWQRPYICPKPC-KQGVCSAARTCACYEGWFGRTCSQRSDSGEDKS 196
           C  G+ GD C       +C   C   G C     C C EGW GR C++R   G   S
Sbjct: 294 CSKGYHGDLCS----KAVCEPSCGAHGTCVEPNRCQCREGWHGRHCNKRFRGGVSNS 346

Binds to WNT proteins and inhibits their activities. May be involved in mesoderm segmentation.

Danio rerio (taxid: 7955)

>sp|Q8N2E2|VWDE_HUMAN von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4

 Score =  110 bits (276), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 84/166 (50%), Gaps = 9/166 (5%)

Query: 21   CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
            C   C +GG C+  + C C  GF G RCE  +C   C NGG+C+  D C+C+ G+YG  C
Sbjct: 1362 CNPPCQHGGTCLAGNLCTCPYGFVGPRCETMVCNRHCENGGQCLTPDICQCKPGWYGPTC 1421

Query: 81   EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCR 140
              + C   CLNGG C   N C CP GF G++C+       + C  PC NGG C   N C 
Sbjct: 1422 STALCDPVCLNGGSCNKPNTCLCPNGFFGEHCQ------NAFCHPPCKNGGHCMRNNVCV 1475

Query: 141  CPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTCS 186
            C  G+ G     +Q+    P     G C    TC+C  GW G+ C+
Sbjct: 1476 CREGYTG---RRFQKSICDPTCMNGGKCVGPSTCSCPSGWSGKRCN 1518

Homo sapiens (taxid: 9606)

>sp|Q8TER0|SNED1_HUMAN Sushi, nidogen and EGF-like domain-containing protein 1 OS=Homo sapiens GN=SNED1 PE=2 SV=2

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 97/229 (42%), Gaps = 62/229 (27%)

Query: 24  KCLNGGKCVQKDT--CECQKGFYGLRCEF---------------------------CIC- 53
           +C NGG+C+  +T  C+C  GF+GL CEF                           C+C 
Sbjct: 473 ECRNGGRCLGANTTLCQCPLGFFGLLCEFEITAMPCNMNTQCPDGGYCMEHGGSYLCVCH 532

Query: 54  --------------TEKCLNGGKCVQKD---TCECQKGFYGLRCEFSKCII----PCLNG 92
                         ++ C NGG C   D   TCEC +GF+G  CE ++  +    PC NG
Sbjct: 533 TDHNASHSLPSPCDSDPCFNGGSCDAHDDSYTCECPRGFHGKHCEKARPHLCSSGPCRNG 592

Query: 93  GRCK---GVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRC---KGVNKCRCPPGFL 146
           G CK   G   C CP  F G +CEI +    +    PC NGG C    G  KC CPPGF 
Sbjct: 593 GTCKEAGGEYHCSCPYRFTGRHCEIGKPDSCASG--PCHNGGTCFHYIGKYKCDCPPGFS 650

Query: 147 GDYCEIWQRPYICPKPCKQGVCSAART---CACYEGWFGRTCSQRSDSG 192
           G +CEI   P         G C    T   C C  G+ GR C    D G
Sbjct: 651 GRHCEIAPSPCFRSPCVNGGTCEDRDTDFFCHCQAGYMGRRCQAEVDCG 699

Homo sapiens (taxid: 9606)

>sp|Q5ZQU0|SNED1_RAT Sushi, nidogen and EGF-like domain-containing protein 1 OS=Rattus norvegicus GN=Sned1 PE=2 SV=2

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 97/229 (42%), Gaps = 62/229 (27%)

Query: 25  CLNGGKCVQKDT--CECQKGFYGLRCEF---------------------------CIC-- 53
           C NGG+C+  +T  C+C  GF+GL CEF                           C+C  
Sbjct: 474 CRNGGRCLGANTTICQCPPGFFGLLCEFEVTATPCNMNTQCPDGGYCMEYGGSYLCVCHT 533

Query: 54  -------------TEKCLNGGKCVQKD---TCECQKGFYGLRCEFSKCII----PCLNGG 93
                        ++ C NGG C   +   TCEC +GF+G  CE ++  +    PC NGG
Sbjct: 534 DHNISHSLPSPCDSDPCFNGGSCDAHEDSYTCECPRGFHGRHCEKARPHLCSSGPCRNGG 593

Query: 94  RCKGVN---KCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRC---KGVNKCRCPPGFLG 147
            CK      +C CP  F G +CEI +    +    PC NGG C    G  KC CPPGF G
Sbjct: 594 TCKETGDEYRCTCPYRFTGRHCEIGKPDSCASG--PCHNGGTCFHYIGKYKCDCPPGFSG 651

Query: 148 DYCEIWQRPYICPKPCKQGVCSAART---CACYEGWFGRTCSQRSDSGE 193
            +CEI   P         G+C    T   C C  G+ G  C    D G+
Sbjct: 652 RHCEIAPSPCFRSPCMNGGICEDLGTDFSCHCQPGYTGHRCQAEVDCGQ 700

Rattus norvegicus (taxid: 10116)

>sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 92/196 (46%), Gaps = 34/196 (17%)

Query: 12   TILLFVSGICTEKCLNGGKCV----QKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQK- 66
            + ++  +  C   CLNGG C     ++  C CQ  + G RC+   C++ C NGG C    
Sbjct: 4190 SAVVPTTDTCDLVCLNGGSCFLNARKQAKCRCQPRYNGERCQINQCSDYCQNGGLCTASP 4249

Query: 67   ---DTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNK-----CRCPPGFLGDYCEIWQRP 118
                TC C  GF G RC+   C   C N G C  VN+     CRCPP F+GD C+  Q  
Sbjct: 4250 SGMPTCRCPTGFTGSRCDQQVCTNYCHNNGSCT-VNQGNQPNCRCPPTFIGDRCQYQQ-- 4306

Query: 119  YISKCIIPCLNGGRCK----GVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAAR-- 172
                C   C N G C+    GV +CRCPP F G  C+       C + C++G C+  R  
Sbjct: 4307 ----CFNYCENNGVCQMSRDGVKQCRCPPQFEGAQCQ----DNKCSR-CQEGKCNINRQS 4357

Query: 173  ---TCACYEGWFGRTC 185
               +C C +G    +C
Sbjct: 4358 GDVSCICPDGKIAPSC 4373

Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
321454596	335	hypothetical protein DAPPUDRAFT_116992 [	0.572	0.423	0.488	2e-36
156546349	342	PREDICTED: protein shifted-like [Nasonia	0.532	0.385	0.611	8e-36
328700417	394	PREDICTED: protein shifted-like [Acyrtho	0.657	0.413	0.476	5e-35
383863725	338	PREDICTED: protein shifted-like isoform	0.532	0.390	0.597	3e-34
340714439	358	PREDICTED: protein shifted-like isoform	0.532	0.368	0.589	4e-34
350399172	338	PREDICTED: protein shifted-like isoform	0.532	0.390	0.589	5e-34
340714437	338	PREDICTED: protein shifted-like isoform	0.532	0.390	0.589	7e-34
328788311	352	PREDICTED: protein shifted isoform 1 [Ap	0.532	0.375	0.589	7e-34
328788309	338	PREDICTED: protein shifted isoform 3 [Ap	0.532	0.390	0.589	1e-33
157129179	379	hypothetical protein AaeL_AAEL011386 [Ae	0.693	0.453	0.430	4e-33

>gi|321454596|gb|EFX65761.1| hypothetical protein DAPPUDRAFT_116992 [Daphnia pulex]

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/176 (48%), Positives = 104/176 (59%), Gaps = 34/176 (19%)

Query: 18  SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYG 77
           + +C  +C+NGG C     C C  GF G  CE  IC +KCLNGGKC+QKDTC+C KGFYG
Sbjct: 193 TALCYPQCMNGGSCTSPGMCSCPSGFQGRHCEGGICKDKCLNGGKCIQKDTCDCPKGFYG 252

Query: 78  LRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVN 137
           LRCEF+KC+IPCLNGGRCKGVNKCRC PGF GD+CE+                       
Sbjct: 253 LRCEFTKCVIPCLNGGRCKGVNKCRCSPGFKGDHCEV----------------------- 289

Query: 138 KCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTCSQRSDSGE 193
               PPG L       QR ++C +PC+ G C     C C+EGW G+ C  RS + E
Sbjct: 290 ---TPPGRLA------QR-HLCQRPCRHGTCVGQNRCLCHEGWHGKLC-HRSMTNE 334

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546349|ref|XP_001606619.1| PREDICTED: protein shifted-like [Nasonia vitripennis]

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 82/134 (61%), Positives = 92/134 (68%), Gaps = 2/134 (1%)

Query: 19  GICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGL 78
            +C   C+NGG C     C C  GF G  CE  ICTEKCLNGGKCVQKDTCEC KGF+GL
Sbjct: 204 ALCYPNCMNGGNCTAPGVCSCPPGFQGPYCEGGICTEKCLNGGKCVQKDTCECPKGFFGL 263

Query: 79  RCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQR-PYISKCIIPCLNGGRCKGVN 137
           RCEFSKC+IPCLNGG+CKG N CRCP GF G++CEI +R P  S C  PC N G C+  N
Sbjct: 264 RCEFSKCVIPCLNGGKCKGNNICRCPTGFKGNHCEIGRRSPQRSACTKPCRN-GTCQPDN 322

Query: 138 KCRCPPGFLGDYCE 151
            C C PG+ G  C 
Sbjct: 323 TCHCEPGWFGKLCN 336

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328700417|ref|XP_003241249.1| PREDICTED: protein shifted-like [Acyrthosiphon pisum]

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 82/172 (47%), Positives = 105/172 (61%), Gaps = 9/172 (5%)

Query: 20  ICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLR 79
           +C +KC N G C     C+C +G+ G  C+  +C  +C+N G CV    C C +GF G  
Sbjct: 191 VCDKKCENNGWCNADKICQCPEGYMGQYCKTALCYPQCMNNGTCVAPGVCRCPQGFQGPH 250

Query: 80  CEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKC 139
           CE   C   CLNGG+C   + C+CP GF G  CE       SKCIIPCLNGG+CKGVNKC
Sbjct: 251 CEGGICAEKCLNGGKCIQKDTCQCPKGFYGLRCE------YSKCIIPCLNGGKCKGVNKC 304

Query: 140 RCPPGFLGDYCEIWQ---RPYICPKPCKQGVCSAARTCACYEGWFGRTCSQR 188
           RC  GF GD+CEI Q   + Y C +PC+ G C+A R C C +GWFG+ C ++
Sbjct: 305 RCIFGFQGDHCEIGQPIKQYYNCKRPCRHGYCTANRICRCQQGWFGKFCQRK 356

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863725|ref|XP_003707330.1| PREDICTED: protein shifted-like isoform 1 [Megachile rotundata]

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/134 (59%), Positives = 90/134 (67%), Gaps = 2/134 (1%)

Query: 19  GICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGL 78
            +C   C+NGG C     C C  GF G  CE  IC EKCLNGGKCVQKDTCEC KG++GL
Sbjct: 200 ALCYPNCMNGGNCTAPGICSCPPGFQGPYCEGGICAEKCLNGGKCVQKDTCECPKGYFGL 259

Query: 79  RCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQR-PYISKCIIPCLNGGRCKGVN 137
           RCEFSKC+IPCLNGG+CKG N CRCP GF GD+CEI +R P  S C   C N G C+  N
Sbjct: 260 RCEFSKCVIPCLNGGKCKGNNVCRCPAGFKGDHCEIGRRSPQRSACTRACRN-GTCQPDN 318

Query: 138 KCRCPPGFLGDYCE 151
            C C PG+ G  C 
Sbjct: 319 TCLCEPGWFGKLCN 332

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714439|ref|XP_003395736.1| PREDICTED: protein shifted-like isoform 2 [Bombus terrestris]

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/134 (58%), Positives = 90/134 (67%), Gaps = 2/134 (1%)

Query: 19  GICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGL 78
            +C   C+NGG C     C C  GF G  CE  IC EKCLNGGKC+QKDTCEC KG++GL
Sbjct: 220 ALCYPNCMNGGNCTAPGICSCPPGFQGPYCEGGICAEKCLNGGKCIQKDTCECPKGYFGL 279

Query: 79  RCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQR-PYISKCIIPCLNGGRCKGVN 137
           RCEFSKC+IPCLNGG+CKG N CRCP GF GD+CEI +R P  S C   C N G C+  N
Sbjct: 280 RCEFSKCVIPCLNGGKCKGNNVCRCPTGFKGDHCEIGRRSPQRSACTRACRN-GTCQPDN 338

Query: 138 KCRCPPGFLGDYCE 151
            C C PG+ G  C 
Sbjct: 339 TCLCEPGWFGKLCN 352

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399172|ref|XP_003485441.1| PREDICTED: protein shifted-like isoform 1 [Bombus impatiens]

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 79/134 (58%), Positives = 90/134 (67%), Gaps = 2/134 (1%)

Query: 19  GICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGL 78
            +C   C+NGG C     C C  GF G  CE  IC EKCLNGGKC+QKDTCEC KG++GL
Sbjct: 200 ALCYPNCMNGGNCTAPGVCSCPPGFQGPYCEGGICAEKCLNGGKCIQKDTCECPKGYFGL 259

Query: 79  RCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQR-PYISKCIIPCLNGGRCKGVN 137
           RCEFSKC+IPCLNGG+CKG N CRCP GF GD+CEI +R P  S C   C N G C+  N
Sbjct: 260 RCEFSKCVIPCLNGGKCKGNNVCRCPTGFKGDHCEIGRRSPQRSACTRACRN-GTCQPDN 318

Query: 138 KCRCPPGFLGDYCE 151
            C C PG+ G  C 
Sbjct: 319 TCLCEPGWFGKLCN 332

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714437|ref|XP_003395735.1| PREDICTED: protein shifted-like isoform 1 [Bombus terrestris]

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 79/134 (58%), Positives = 90/134 (67%), Gaps = 2/134 (1%)

Query: 19  GICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGL 78
            +C   C+NGG C     C C  GF G  CE  IC EKCLNGGKC+QKDTCEC KG++GL
Sbjct: 200 ALCYPNCMNGGNCTAPGICSCPPGFQGPYCEGGICAEKCLNGGKCIQKDTCECPKGYFGL 259

Query: 79  RCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQR-PYISKCIIPCLNGGRCKGVN 137
           RCEFSKC+IPCLNGG+CKG N CRCP GF GD+CEI +R P  S C   C N G C+  N
Sbjct: 260 RCEFSKCVIPCLNGGKCKGNNVCRCPTGFKGDHCEIGRRSPQRSACTRACRN-GTCQPDN 318

Query: 138 KCRCPPGFLGDYCE 151
            C C PG+ G  C 
Sbjct: 319 TCLCEPGWFGKLCN 332

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788311|ref|XP_003251103.1| PREDICTED: protein shifted isoform 1 [Apis mellifera]

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 79/134 (58%), Positives = 89/134 (66%), Gaps = 2/134 (1%)

Query: 19  GICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGL 78
            +C   C+NGG C     C C  GF G  CE  IC EKCLNGGKCVQKDTCEC KG++GL
Sbjct: 214 ALCYPNCMNGGNCTAPGVCSCPPGFQGPYCEGGICAEKCLNGGKCVQKDTCECPKGYFGL 273

Query: 79  RCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQR-PYISKCIIPCLNGGRCKGVN 137
            CEFSKC+IPCLNGG+CKG N CRCP GF GD+CEI +R P  S C   C N G C+  N
Sbjct: 274 HCEFSKCVIPCLNGGKCKGNNVCRCPAGFKGDHCEIGRRSPQRSACTRACRN-GTCQPDN 332

Query: 138 KCRCPPGFLGDYCE 151
            C C PG+ G  C 
Sbjct: 333 TCLCEPGWFGKLCN 346

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788309|ref|XP_625183.2| PREDICTED: protein shifted isoform 3 [Apis mellifera] gi|380025843|ref|XP_003696673.1| PREDICTED: protein shifted-like [Apis florea]

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/134 (58%), Positives = 89/134 (66%), Gaps = 2/134 (1%)

Query: 19  GICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGL 78
            +C   C+NGG C     C C  GF G  CE  IC EKCLNGGKCVQKDTCEC KG++GL
Sbjct: 200 ALCYPNCMNGGNCTAPGVCSCPPGFQGPYCEGGICAEKCLNGGKCVQKDTCECPKGYFGL 259

Query: 79  RCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQR-PYISKCIIPCLNGGRCKGVN 137
            CEFSKC+IPCLNGG+CKG N CRCP GF GD+CEI +R P  S C   C N G C+  N
Sbjct: 260 HCEFSKCVIPCLNGGKCKGNNVCRCPAGFKGDHCEIGRRSPQRSACTRACRN-GTCQPDN 318

Query: 138 KCRCPPGFLGDYCE 151
            C C PG+ G  C 
Sbjct: 319 TCLCEPGWFGKLCN 332

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157129179|ref|XP_001655311.1| hypothetical protein AaeL_AAEL011386 [Aedes aegypti] gi|108872308|gb|EAT36533.1| AAEL011386-PB [Aedes aegypti]

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 101/179 (56%), Gaps = 7/179 (3%)

Query: 21  CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
           C +KC N G C +   C C +G+ G  C+  +C  +C+NGG C     C C  G+ G  C
Sbjct: 204 CDKKCANKGVCNEDKICVCPEGYMGQYCQTALCYPQCMNGGNCTAPGNCSCPPGYQGRHC 263

Query: 81  EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCR 140
           E   C   CLNGG+C   +KC C  G+ G  CE       SKC+IPCL+ G+CKGVNKCR
Sbjct: 264 EGGICAEKCLNGGKCIQKDKCECTKGYYGLRCE------FSKCVIPCLHDGKCKGVNKCR 317

Query: 141 CPPGFLGDYCEIWQRP-YICPKPCKQGVCSAARTCACYEGWFGRTCSQRSDSGEDKSTF 198
           C PG  GD+C+I +R    C +PCK G C    TC+C  GWFG+ C++R     + S  
Sbjct: 318 CKPGLSGDHCQIGRRQRSTCKRPCKHGTCQPDHTCSCDNGWFGKLCNRREKKKRNGSKL 376

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
UNIPROTKB|F1NHY7	384	WIF1 "Uncharacterized protein"	0.637	0.411	0.455	5.2e-42
MGI|MGI:1344332	379	Wif1 "Wnt inhibitory factor 1"	0.637	0.416	0.449	4.6e-41
RGD|619774	379	Wif1 "Wnt inhibitory factor 1"	0.637	0.416	0.449	4.6e-41
UNIPROTKB|Q9Y5W5	379	WIF1 "Wnt inhibitory factor 1"	0.649	0.424	0.441	1.2e-40
UNIPROTKB|E2R4E3	379	WIF1 "Uncharacterized protein"	0.637	0.416	0.455	1.6e-40
UNIPROTKB|E1BNM8	381	WIF1 "Uncharacterized protein"	0.637	0.414	0.449	1.6e-40
FB|FBgn0003390	456	shf "shifted" [Drosophila mela	0.552	0.300	0.503	4.2e-40
ZFIN|ZDB-GENE-990712-17	378	wif1 "wnt inhibitory factor 1"	0.669	0.439	0.429	1.1e-39
UNIPROTKB|F1NA43	866	F1NA43 "Uncharacterized protei	0.649	0.185	0.424	8.5e-37
ZFIN|ZDB-GENE-050208-577	1983	si:ch211-246m6.5 "si:ch211-246	0.649	0.081	0.430	8.8e-37

UNIPROTKB|F1NHY7 WIF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 77/169 (45%), Positives = 95/169 (56%)

Query:    21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
             C   C NGG C ++  CEC  GFYG  CE  +C  +C+NGG C+    C C  GFYG+ C
Sbjct:   187 CPGGCRNGGFCNERHVCECPDGFYGPHCEKALCAPRCMNGGLCITPGLCICPPGFYGINC 246

Query:    81 EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCR 140
             + + C   C NGG C  + KC CP GF GD CEI      SKC  PC NGG+C G NKC+
Sbjct:   247 DKANCTTTCFNGGTCFYLGKCICPSGFEGDQCEI------SKCHQPCRNGGKCMGKNKCK 300

Query:   141 CPPGFLGDYCEIWQRPYICPKPCK-QGVCSAARTCACYEGWFGRTCSQR 188
             C  G+ GD C    +P +C   C   G C+    C C EGW GR C++R
Sbjct:   301 CSKGYQGDLCS---KP-VCEPGCGLYGTCAEPNKCHCKEGWHGRHCNKR 345

GO:0045600 "positive regulation of fat cell differentiation" evidence=IEA

MGI|MGI:1344332 Wif1 "Wnt inhibitory factor 1" [Mus musculus (taxid:10090)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 76/169 (44%), Positives = 94/169 (55%)

Query:    21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
             C   C NGG C ++  CEC  GFYG  CE  +C  +C+NGG CV    C C  GFYG+ C
Sbjct:   182 CPGGCRNGGFCNERRVCECPDGFYGPHCEKALCIPRCMNGGLCVTPGFCICPPGFYGVNC 241

Query:    81 EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCR 140
             + + C   C NGG C    KC CPPG  G+ CE+      SKC  PC NGG+C G +KC+
Sbjct:   242 DKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEL------SKCPQPCRNGGKCIGKSKCK 295

Query:   141 CPPGFLGDYCEIWQRPYICPKPC-KQGVCSAARTCACYEGWFGRTCSQR 188
             CP G+ GD C    +P +C   C   G C     C C EGW GR C++R
Sbjct:   296 CPKGYQGDLCS---KP-VCEPGCGAHGTCHEPNKCQCREGWHGRHCNKR 340

GO:0005576 "extracellular region" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0017147 "Wnt-protein binding" evidence=ISO

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISO

GO:0045600 "positive regulation of fat cell differentiation" evidence=IDA

RGD|619774 Wif1 "Wnt inhibitory factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 76/169 (44%), Positives = 94/169 (55%)

Query:    21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
             C   C NGG C ++  CEC  GFYG  CE  +C  +C+NGG CV    C C  GFYG+ C
Sbjct:   182 CPGGCRNGGFCNERRVCECPDGFYGPHCEKALCIPRCMNGGLCVTPGFCICPPGFYGVNC 241

Query:    81 EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCR 140
             + + C   C NGG C    KC CPPG  G+ CE+      SKC  PC NGG+C G +KC+
Sbjct:   242 DKANCSATCFNGGTCFYPGKCICPPGLEGEQCEL------SKCPQPCRNGGKCIGKSKCK 295

Query:   141 CPPGFLGDYCEIWQRPYICPKPC-KQGVCSAARTCACYEGWFGRTCSQR 188
             CP G+ GD C    +P +C   C   G C     C C EGW GR C++R
Sbjct:   296 CPKGYQGDLCS---KP-VCEPGCGAHGTCHEPNKCQCREGWHGRHCNKR 340

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0045600 "positive regulation of fat cell differentiation" evidence=IEA;ISO

UNIPROTKB|Q9Y5W5 WIF1 "Wnt inhibitory factor 1" [Homo sapiens (taxid:9606)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 76/172 (44%), Positives = 96/172 (55%)

Query:    21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
             C   C NGG C ++  CEC  GF+G  CE  +CT +C+NGG CV    C C  GFYG+ C
Sbjct:   182 CPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNC 241

Query:    81 EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCR 140
             + + C   C NGG C    KC CPPG  G+ CEI      SKC  PC NGG+C G +KC+
Sbjct:   242 DKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEI------SKCPQPCRNGGKCIGKSKCK 295

Query:   141 CPPGFLGDYCEIWQRPYICPKPC-KQGVCSAARTCACYEGWFGRTCSQRSDS 191
             C  G+ GD C    +P +C   C   G C     C C EGW GR C++R ++
Sbjct:   296 CSKGYQGDLCS---KP-VCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEA 343

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0045600 "positive regulation of fat cell differentiation" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0007165 "signal transduction" evidence=NAS

UNIPROTKB|E2R4E3 WIF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 77/169 (45%), Positives = 93/169 (55%)

Query:    21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
             C   C NGG C ++  CEC  GFYG  CE  +CT  C+NGG CV    C C  GFYG+ C
Sbjct:   182 CPGGCRNGGFCNERRICECPDGFYGPHCEKALCTPWCMNGGLCVTPGFCICPPGFYGVNC 241

Query:    81 EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCR 140
             + + C   C NGG C    KC CPPG  G+ CEI      SKC  PC NGG+C G +KC+
Sbjct:   242 DKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEI------SKCPQPCRNGGKCIGKSKCK 295

Query:   141 CPPGFLGDYCEIWQRPYICPKPC-KQGVCSAARTCACYEGWFGRTCSQR 188
             C  G+ GD C    +P +C   C   G C     C C EGW GR C++R
Sbjct:   296 CSKGYQGDLCS---KP-VCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKR 340

GO:0045600 "positive regulation of fat cell differentiation" evidence=IEA

UNIPROTKB|E1BNM8 WIF1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 76/169 (44%), Positives = 93/169 (55%)

Query:    21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
             C   C NGG C ++  CEC  GFYG  CE  +C+ +C+NGG CV    C C  GFYG+ C
Sbjct:   184 CPGGCRNGGFCNERRVCECPDGFYGPHCEKVLCSPRCMNGGLCVTPGFCICPPGFYGVNC 243

Query:    81 EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCR 140
             + + C   C NGG C    KC CPPG  G+ CE       SKC  PC NGG+C G NKC+
Sbjct:   244 DKANCSATCFNGGTCFYPGKCICPPGLEGEQCET------SKCPQPCRNGGKCIGKNKCK 297

Query:   141 CPPGFLGDYCEIWQRPYICPKPC-KQGVCSAARTCACYEGWFGRTCSQR 188
             C  G+ GD C    +P +C   C   G C     C C EGW GR C++R
Sbjct:   298 CSKGYQGDLCS---KP-VCKPGCGTHGTCHEPNKCQCREGWHGRHCNKR 342

GO:0045600 "positive regulation of fat cell differentiation" evidence=IEA

FB|FBgn0003390 shf "shifted" [Drosophila melanogaster (taxid:7227)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 71/141 (50%), Positives = 91/141 (64%)

Query:    18 SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYG 77
             +  C  +CLNGG C     C C +G+ G +CE  IC +KCLNGGKC+QKD C+C KG+YG
Sbjct:   312 TAFCFPQCLNGGNCTAPSVCTCPEGYQGTQCEGGICKDKCLNGGKCIQKDKCQCSKGYYG 371

Query:    78 LRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVN 137
             LRCE+SKC+IPC N GRC G N CRCP G  GD+CEI ++    + I  C NG  C    
Sbjct:   372 LRCEYSKCVIPCKNEGRCIGNNLCRCPNGLRGDHCEIGRK---QRSICKCRNG-TCVSHK 427

Query:   138 KCRCPPGFLGDYCEIWQRPYI 158
              C+C PGF G +C   +R ++
Sbjct:   428 HCKCHPGFYGRHCNGRKRRHV 448

GO:0050821 "protein stabilization" evidence=IMP

GO:0005578 "proteinaceous extracellular matrix" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016055 "Wnt receptor signaling pathway" evidence=IMP

GO:0007224 "smoothened signaling pathway" evidence=IGI;IMP

GO:0008589 "regulation of smoothened signaling pathway" evidence=IMP

GO:0005576 "extracellular region" evidence=IDA

GO:0008039 "synaptic target recognition" evidence=IMP

GO:0045880 "positive regulation of smoothened signaling pathway" evidence=IMP

ZFIN|ZDB-GENE-990712-17 wif1 "wnt inhibitory factor 1" [Danio rerio (taxid:7955)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 76/177 (42%), Positives = 93/177 (52%)

Query:    21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
             C   C NGG C ++  CECQ GFYG+ CE  +C+ +CLNGG C+    C C  G++G  C
Sbjct:   180 CPGGCRNGGYCNERQVCECQDGFYGVHCEKALCSPRCLNGGLCMSPGVCICPPGYFGSSC 239

Query:    81 EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCR 140
             E + C   CLNGG C    KC C   F G  CE+      SKC  PC NGG+C G NKC+
Sbjct:   240 ERANCSTTCLNGGTCFHPGKCICAVSFEGVRCEL------SKCRQPCRNGGKCTGRNKCK 293

Query:   141 CPPGFLGDYCEIWQRPYICPKPC-KQGVCSAARTCACYEGWFGRTCSQRSDSGEDKS 196
             C  G+ GD C       +C   C   G C     C C EGW GR C++R   G   S
Sbjct:   294 CSKGYHGDLCS----KAVCEPSCGAHGTCVEPNRCQCREGWHGRHCNKRFRGGVSNS 346

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IDA

GO:0005576 "extracellular region" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|F1NA43 F1NA43 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 405 (147.6 bits), Expect = 8.5e-37, P = 8.5e-37
 Identities = 73/172 (42%), Positives = 96/172 (55%)

Query:    18 SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYG 77
             + +C   CLNGG CV+ +TC C  GFYG RC+  +C   C NGG CV+ + C C +G+ G
Sbjct:   699 TAVCNPVCLNGGICVRPNTCTCPYGFYGPRCQRAVCIPPCKNGGHCVRTNVCSCTEGYTG 758

Query:    78 LRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVN 137
              RC+ S C   C+NGG+C   N C CP G+ G +C    +P    C+  CLNGG C G N
Sbjct:   759 RRCQKSVCDPVCMNGGKCVSPNVCDCPSGWRGKHCN---KPV---CLQKCLNGGECIGPN 812

Query:   138 KCRCPPGFLGDYCEIWQRPYICPKPCKQGV-CSAARTCACYEGWFGRTCSQR 188
              C CP G++G  C   Q P IC + C  G  C     CAC  G+ G  C ++
Sbjct:   813 ICECPEGWVGMLC---QTP-ICEQKCLFGSRCIKPNVCACRSGYTGSACGKK 860

GO:0005509 "calcium ion binding" evidence=IEA

ZFIN|ZDB-GENE-050208-577 si:ch211-246m6.5 "si:ch211-246m6.5" [Danio rerio (taxid:7955)]

 Score = 411 (149.7 bits), Expect = 8.8e-37, P = 8.8e-37
 Identities = 74/172 (43%), Positives = 98/172 (56%)

Query:    18 SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYG 77
             + +C   CLNGG CV+ ++C CQ GFYG RC+  +C   C NGG CV+ + C C +G+ G
Sbjct:  1816 TALCDPVCLNGGTCVRPNSCTCQHGFYGARCQNAVCNPPCKNGGHCVRNNVCSCVEGYSG 1875

Query:    78 LRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVN 137
              RCE S C   C+NGGRC G + C C  G+ G  C+   +P    C+  C+NGG C G N
Sbjct:  1876 QRCEKSVCEPVCVNGGRCIGPDVCDCASGWRGKRCD---KPV---CVQKCVNGGECVGPN 1929

Query:   138 KCRCPPGFLGDYCEIWQRPYICPKPCKQGV-CSAARTCACYEGWFGRTCSQR 188
              C C PG+ G  C+I   P IC + C  G  C     CAC  G+ G  CS++
Sbjct:  1930 SCLCSPGWRGTICQI---P-ICEQRCLFGSRCVRPNVCACRSGYMGTLCSRK 1977

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9W3W5	WIF1_DROME	No assigned EC number	0.5035	0.5524	0.3004	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
KOG1225|consensus	525		99.68
KOG1225|consensus	525		99.67
KOG1226|consensus	783		99.41
KOG1226|consensus	783		99.21
KOG1219|consensus	4289		99.11
KOG1219|consensus	4289		99.08
KOG4289|consensus	2531		98.91
KOG4289|consensus	2531		98.89
KOG1217|consensus	487		98.51
KOG1217|consensus	487		98.35
KOG1214|consensus	1289		98.19
KOG1214|consensus	1289		98.12
KOG4260|consensus	350		98.08
KOG0994|consensus	1758		97.86
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	97.8
KOG4260|consensus	350		97.75
KOG0994|consensus	1758		97.49
smart00051	63	DSL delta serrate ligand.	97.29
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	97.25
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	96.98
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	96.89
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	96.85
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	96.73
smart00051	63	DSL delta serrate ligand.	96.58
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	96.27
KOG1836|consensus	1705		96.13
KOG1218|consensus	316		96.06
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	95.86
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	95.84
cd00053	36	EGF Epidermal growth factor domain, found in epide	95.39
KOG1218|consensus	316		95.12
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	94.75
PF12662	24	cEGF: Complement Clr-like EGF-like	94.51
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	94.46
smart00181	35	EGF Epidermal growth factor-like domain.	94.29
cd00055	50	EGF_Lam Laminin-type epidermal growth factor-like	94.07
PF01414	63	DSL: Delta serrate ligand; InterPro: IPR001774 Lig	93.37
cd00053	36	EGF Epidermal growth factor domain, found in epide	93.34
KOG1836|consensus	1705		93.17
smart00181	35	EGF Epidermal growth factor-like domain.	93.07
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	92.88
PF00053	49	Laminin_EGF: Laminin EGF-like (Domains III and V);	92.83
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	92.61
PHA02887	126	EGF-like protein; Provisional	92.29
smart00180	46	EGF_Lam Laminin-type epidermal growth factor-like	91.94
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	90.99
PF01414	63	DSL: Delta serrate ligand; InterPro: IPR001774 Lig	90.98
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	90.46
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	89.64
PHA02887	126	EGF-like protein; Provisional	85.57
KOG3607|consensus	716		85.48
cd00055	50	EGF_Lam Laminin-type epidermal growth factor-like	80.57
PF01683	52	EB: EB module; InterPro: IPR006149 The EB domain h	80.19

>KOG1225|consensus

Probab=99.68  E-value=4.4e-16  Score=137.81  Aligned_cols=130  Identities=35%  Similarity=0.987  Sum_probs=66.2

Q ss_pred             ceeeCCCCcCCCCCcCCCCCCCCCCCeecCCCceeeCCCCccCCCCcCCCCCCCCCCceecCCCceeCCCCcccCCCCcc
Q psy9568          36 TCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIW  115 (248)
Q Consensus        36 ~C~C~~G~~G~~C~~~~c~~~C~~~g~C~~~~~C~C~~g~~G~~C~~~~C~~~C~~~g~C~~~~~C~C~~g~~g~~C~~~  115 (248)
                      .|.|+.+|+|+.|....|...|.++|.|++ ++|+|++||.|..|+...|...|++++.+.. +.|+|++||.|..|++.
T Consensus       235 ic~c~~~~~g~~c~~~~C~~~c~~~g~c~~-G~CIC~~Gf~G~dC~e~~Cp~~cs~~g~~~~-g~CiC~~g~~G~dCs~~  312 (525)
T KOG1225|consen  235 ICECPEGYFGPLCSTIYCPGGCTGRGQCVE-GRCICPPGFTGDDCDELVCPVDCSGGGVCVD-GECICNPGYSGKDCSIR  312 (525)
T ss_pred             eeecCCceeCCccccccCCCCCcccceEeC-CeEeCCCCCcCCCCCcccCCcccCCCceecC-CEeecCCCccccccccc
Confidence            455555555555554445555555555554 5555555555555554445544555555543 35555555555555432


Q ss_pred             CCCCCCCCCCCCCCCceeeCCCeeeCCCCCCCCCCCcCCCCCCCCCCCCC-CccCCCCeeecCCCCccCC
Q psy9568         116 QRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQ-GVCSAARTCACYEGWFGRT  184 (248)
Q Consensus       116 ~~~~~~~c~~~C~~~g~C~~~~~C~C~~g~~g~~C~~~~~~~~c~~~C~~-g~C~~~~~C~C~~g~~G~~  184 (248)
                      .      |...|.++|.|+ .++|.|.+||+|..|+..       . |.+ |.|+ .+ |.|..||.|.+
T Consensus       313 ~------cpadC~g~G~Ci-~G~C~C~~Gy~G~~C~~~-------~-C~~~g~cv-~g-C~C~~Gw~G~d  365 (525)
T KOG1225|consen  313 R------CPADCSGHGKCI-DGECLCDEGYTGELCIQR-------A-CSGGGQCV-NG-CKCKKGWRGPD  365 (525)
T ss_pred             c------CCccCCCCCccc-CCceEeCCCCcCCccccc-------c-cCCCceec-cC-ceeccCccCCC
Confidence            1      223455555555 355555555555555541       1 444 3444 23 55555555554

>KOG1225|consensus

Probab=99.67  E-value=3e-16  Score=138.80  Aligned_cols=118  Identities=33%  Similarity=0.932  Sum_probs=107.5

Q ss_pred             ccCCCCcCCCCCCEeecCCceeeCCCCcCCCCCcCCCCCCCCCCCeecCCCceeeCCCCccCCCCcCCCCCCCCCCceec
Q psy9568          17 VSGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCK   96 (248)
Q Consensus        17 ~~~~C~~~C~~~g~C~~~~~C~C~~G~~G~~C~~~~c~~~C~~~g~C~~~~~C~C~~g~~G~~C~~~~C~~~C~~~g~C~   96 (248)
                      ....|+..|.++|.|+. +.|+|++||+|.+|++..|...|++++.+++ +.|.|++||+|..|++..|...|.++|.|+
T Consensus       248 ~~~~C~~~c~~~g~c~~-G~CIC~~Gf~G~dC~e~~Cp~~cs~~g~~~~-g~CiC~~g~~G~dCs~~~cpadC~g~G~Ci  325 (525)
T KOG1225|consen  248 STIYCPGGCTGRGQCVE-GRCICPPGFTGDDCDELVCPVDCSGGGVCVD-GECICNPGYSGKDCSIRRCPADCSGHGKCI  325 (525)
T ss_pred             ccccCCCCCcccceEeC-CeEeCCCCCcCCCCCcccCCcccCCCceecC-CEeecCCCccccccccccCCccCCCCCccc
Confidence            46788888999999998 8999999999999998889888999999998 599999999999999988999999999999


Q ss_pred             CCCceeCCCCcccCCCCccCCCCCCCCCCCCCCCceeeCCCeeeCCCCCCCCC
Q psy9568          97 GVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDY  149 (248)
Q Consensus        97 ~~~~C~C~~g~~g~~C~~~~~~~~~~c~~~C~~~g~C~~~~~C~C~~g~~g~~  149 (248)
                       .++|.|.+||+|..|...          .|.+++.|+. + |.|..||.|.+
T Consensus       326 -~G~C~C~~Gy~G~~C~~~----------~C~~~g~cv~-g-C~C~~Gw~G~d  365 (525)
T KOG1225|consen  326 -DGECLCDEGYTGELCIQR----------ACSGGGQCVN-G-CKCKKGWRGPD  365 (525)
T ss_pred             -CCceEeCCCCcCCccccc----------ccCCCceecc-C-ceeccCccCCC
Confidence             689999999999999862          3888888987 4 99999999998

>KOG1226|consensus

Probab=99.41  E-value=3.3e-12  Score=115.57  Aligned_cols=178  Identities=30%  Similarity=0.714  Sum_probs=123.1

Q ss_pred             CceeEEEEEeEEE-eeeccCCCCcCC-----------CCCCEeecCCceeeCCCCcCCCCCc-----------CCC----
Q psy9568           1 MRLNVAVVSLMTI-LLFVSGICTEKC-----------LNGGKCVQKDTCECQKGFYGLRCEF-----------CIC----   53 (248)
Q Consensus         1 ~~~~~~~~~~~~~-~~~~~~~C~~~C-----------~~~g~C~~~~~C~C~~G~~G~~C~~-----------~~c----   53 (248)
                      ++|.|++|.|..+ .+.+...|.-+|           +.+|...= |.|.|.+||.|+.|+-           ..|    
T Consensus       433 ~~~~i~pvgf~e~l~v~v~~~C~C~C~~~~e~~s~~C~g~G~~~C-G~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~  511 (783)
T KOG1226|consen  433 GSFIIRPVGFTETLEVIVQYNCECDCQDQGEPNSALCHGNGTFVC-GQCRCDEGWLGKKCECSTDELSSSEEEDKCRENS  511 (783)
T ss_pred             ceEEEccCCCCcceEEEeeccccccccccCCCCccccCCCCcEEe-cceecCCCCCCCcccCCccccCcHhHHhhccCCC
Confidence            4689999988555 456667775444           33444433 6899999999999971           112    


Q ss_pred             -CCCCCCCCeecCCCceeeCCCCc----cCCCCcCC--CC----CCCCCCceecCCCceeCCCCcccCCCCccCCC--CC
Q psy9568          54 -TEKCLNGGKCVQKDTCECQKGFY----GLRCEFSK--CI----IPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRP--YI  120 (248)
Q Consensus        54 -~~~C~~~g~C~~~~~C~C~~g~~----G~~C~~~~--C~----~~C~~~g~C~~~~~C~C~~g~~g~~C~~~~~~--~~  120 (248)
                       ..+|++.|.|+- ++|.|.+...    |..|+.+.  |.    ..|.++|.|.- ++|+|.+||+|+.|+.....  +.
T Consensus       512 ~~~vCSgrG~C~C-GqC~C~~~~~~~i~G~fCECDnfsC~r~~g~lC~g~G~C~C-G~CvC~~GwtG~~C~C~~std~C~  589 (783)
T KOG1226|consen  512 DSPVCSGRGDCVC-GQCVCHKPDNGKIYGKFCECDNFSCERHKGVLCGGHGRCEC-GRCVCNPGWTGSACNCPLSTDTCE  589 (783)
T ss_pred             CCCCcCCCCcEeC-CceEecCCCCCceeeeeeeccCcccccccCcccCCCCeEeC-CcEEcCCCCccCCCCCCCCCcccc
Confidence             236999999997 8999998766    89998653  44    44999999874 79999999999998754322  22


Q ss_pred             CCCCCCCCCCceeeCCCeeeCCCC-CCCCCCCcCCCCCCCCCCCCC-CccCCCCee-ecCCCCccCCCCCC
Q psy9568         121 SKCIIPCLNGGRCKGVNKCRCPPG-FLGDYCEIWQRPYICPKPCKQ-GVCSAARTC-ACYEGWFGRTCSQR  188 (248)
Q Consensus       121 ~~c~~~C~~~g~C~~~~~C~C~~g-~~g~~C~~~~~~~~c~~~C~~-g~C~~~~~C-~C~~g~~G~~C~~~  188 (248)
                      ..-...|+..|+|.- ++|.|... |.|..|+.   .+.|+++|.. ..|+   +| ....|+.+..|...
T Consensus       590 ~~~G~iCSGrG~C~C-g~C~C~~~~~sG~~CE~---cptc~~~C~~~~~Cv---eC~~~~~g~~~~~C~~~  653 (783)
T KOG1226|consen  590 SSDGQICSGRGTCEC-GRCKCTDPPYSGEFCEK---CPTCPDPCAENKSCV---ECQAFETGPVGDTCVEE  653 (783)
T ss_pred             CCCCceeCCCceeeC-CceEcCCCCcCcchhhc---CCCCCCcccccccch---hhcccccccccchHHHH
Confidence            211245777788774 67888766 99999997   3566777753 5554   11 22345666666543

>KOG1226|consensus

Probab=99.21  E-value=1.1e-10  Score=105.78  Aligned_cols=135  Identities=29%  Similarity=0.700  Sum_probs=101.3

Q ss_pred             CCCCCCCeecCCCceeeCCCCccCCCCcC-----------CCC-----CCCCCCceecCCCceeCCCCcc----cCCCCc
Q psy9568          55 EKCLNGGKCVQKDTCECQKGFYGLRCEFS-----------KCI-----IPCLNGGRCKGVNKCRCPPGFL----GDYCEI  114 (248)
Q Consensus        55 ~~C~~~g~C~~~~~C~C~~g~~G~~C~~~-----------~C~-----~~C~~~g~C~~~~~C~C~~g~~----g~~C~~  114 (248)
                      ..|+++|+.+- +.|.|.+||.|..|+.+           .|.     .+|+++|.|.- ++|+|.+...    |..|+-
T Consensus       467 ~~C~g~G~~~C-G~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~C-GqC~C~~~~~~~i~G~fCEC  544 (783)
T KOG1226|consen  467 ALCHGNGTFVC-GQCRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVC-GQCVCHKPDNGKIYGKFCEC  544 (783)
T ss_pred             cccCCCCcEEe-cceecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeC-CceEecCCCCCceeeeeeec
Confidence            45888888886 89999999999999732           243     36999999984 6899988766    899987


Q ss_pred             cCCCCCCCCCCCCCCCceeeCCCeeeCCCCCCCCCCCcCCCCCCCC----CCCCC-CccCCCCeeecCCC-CccCCCCCC
Q psy9568         115 WQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICP----KPCKQ-GVCSAARTCACYEG-WFGRTCSQR  188 (248)
Q Consensus       115 ~~~~~~~~c~~~C~~~g~C~~~~~C~C~~g~~g~~C~~~~~~~~c~----~~C~~-g~C~~~~~C~C~~g-~~G~~C~~~  188 (248)
                      +...+...-...|.++|.|.- ++|.|.+||+|..|+-..+.+.|.    ..|.. |+|. -++|.|... |.|..|+. 
T Consensus       545 DnfsC~r~~g~lC~g~G~C~C-G~CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~-Cg~C~C~~~~~sG~~CE~-  621 (783)
T KOG1226|consen  545 DNFSCERHKGVLCGGHGRCEC-GRCVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCE-CGRCKCTDPPYSGEFCEK-  621 (783)
T ss_pred             cCcccccccCcccCCCCeEeC-CcEEcCCCCccCCCCCCCCCccccCCCCceeCCCceee-CCceEcCCCCcCcchhhc-
Confidence            665544433357999999875 899999999999998876666662    23543 6776 568888655 99999975 


Q ss_pred             CCCCCC
Q psy9568         189 SDSGED  194 (248)
Q Consensus       189 ~~~~~~  194 (248)
                      .+.+..
T Consensus       622 cptc~~  627 (783)
T KOG1226|consen  622 CPTCPD  627 (783)
T ss_pred             CCCCCC
Confidence            344433

>KOG1219|consensus

Probab=99.11  E-value=1.4e-10  Score=114.00  Aligned_cols=102  Identities=40%  Similarity=0.935  Sum_probs=85.3

Q ss_pred             CCC-CCCCCCceec----CCCceeCCCCcccCCCCccCCCCCCCCCCCCCCCceee---CCCeeeCCCCCCCCCCCcCCC
Q psy9568          84 KCI-IPCLNGGRCK----GVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQR  155 (248)
Q Consensus        84 ~C~-~~C~~~g~C~----~~~~C~C~~g~~g~~C~~~~~~~~~~c~~~C~~~g~C~---~~~~C~C~~g~~g~~C~~~~~  155 (248)
                      .|. .||+++|.|.    +.|.|.|++-|.|..|++....+..   .||.++|+|.   ..+.|.|+.||+|..|+..- 
T Consensus      3866 ~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~epC~s---nPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~~G- 3941 (4289)
T KOG1219|consen 3866 PCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDLEPCAS---NPCLTGGTCIPFYNGFLCNCPNGYTGKRCEARG- 3941 (4289)
T ss_pred             ccccCcccCCCEecCCCCCceEEeCcccccCcccccccccccC---CCCCCCCEEEecCCCeeEeCCCCccCceeeccc-
Confidence            444 7899999998    4589999999999999998765544   5999999998   44689999999999999852 


Q ss_pred             CCCC-CCCCCC-CccC---CCCeeecCCCCccCCCCCCC
Q psy9568         156 PYIC-PKPCKQ-GVCS---AARTCACYEGWFGRTCSQRS  189 (248)
Q Consensus       156 ~~~c-~~~C~~-g~C~---~~~~C~C~~g~~G~~C~~~~  189 (248)
                      ..+| .++|.+ |.|+   ++|.|.|-+||.|..|....
T Consensus      3942 i~eCs~n~C~~gg~C~n~~gsf~CncT~g~~gr~c~~~~ 3980 (4289)
T KOG1219|consen 3942 ISECSKNVCGTGGQCINIPGSFHCNCTPGILGRTCCAEK 3980 (4289)
T ss_pred             ccccccccccCCceeeccCCceEeccChhHhcccCcccc
Confidence            4567 688987 8898   78999999999999985433

>KOG1219|consensus

Probab=99.08  E-value=1.7e-10  Score=113.45  Aligned_cols=95  Identities=40%  Similarity=1.006  Sum_probs=72.8

Q ss_pred             CCCCCCCeecC----CCceeeCCCCccCCCCc--CCCC-CCCCCCceec---CCCceeCCCCcccCCCCccCCCCCCCCC
Q psy9568          55 EKCLNGGKCVQ----KDTCECQKGFYGLRCEF--SKCI-IPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYISKCI  124 (248)
Q Consensus        55 ~~C~~~g~C~~----~~~C~C~~g~~G~~C~~--~~C~-~~C~~~g~C~---~~~~C~C~~g~~g~~C~~~~~~~~~~c~  124 (248)
                      .+|+++|+|..    .|.|.|++-|.|.+|++  ..|. .||.+||+|+   +.+.|.|+.||+|..|+...   +++|.
T Consensus      3870 npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~~G---i~eCs 3946 (4289)
T KOG1219|consen 3870 NPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEARG---ISECS 3946 (4289)
T ss_pred             CcccCCCEecCCCCCceEEeCcccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCceeeccc---ccccc
Confidence            57888888875    46888888888888875  3566 7888888887   45788888888888888652   34554


Q ss_pred             -CCCCCCceee---CCCeeeCCCCCCCCCCCc
Q psy9568         125 -IPCLNGGRCK---GVNKCRCPPGFLGDYCEI  152 (248)
Q Consensus       125 -~~C~~~g~C~---~~~~C~C~~g~~g~~C~~  152 (248)
                       .+|.++|.|.   +++.|.|.+||.|+.|..
T Consensus      3947 ~n~C~~gg~C~n~~gsf~CncT~g~~gr~c~~ 3978 (4289)
T KOG1219|consen 3947 KNVCGTGGQCINIPGSFHCNCTPGILGRTCCA 3978 (4289)
T ss_pred             cccccCCceeeccCCceEeccChhHhcccCcc
Confidence             5788888887   557888888888887754

>KOG4289|consensus

Probab=98.91  E-value=5.4e-10  Score=106.37  Aligned_cols=108  Identities=44%  Similarity=0.932  Sum_probs=85.2

Q ss_pred             EEEeEEEeeeccCCCCc-CCCCCCEeec-------------------------CCceeeCCCCcCCCCCcC--CC-CCCC
Q psy9568           7 VVSLMTILLFVSGICTE-KCLNGGKCVQ-------------------------KDTCECQKGFYGLRCEFC--IC-TEKC   57 (248)
Q Consensus         7 ~~~~~~~~~~~~~~C~~-~C~~~g~C~~-------------------------~~~C~C~~G~~G~~C~~~--~c-~~~C   57 (248)
                      .+++...+..+.++|.. +|.+...|++                         +..|+|++||+|..|+..  .| ..+|
T Consensus      1168 ~~sll~VlpfdDniClrEPCenymkCvsvlrFdssapf~~s~s~lfRpi~pvnglrCrCPpGFTgd~CeTeiDlCYs~pC 1247 (2531)
T KOG4289|consen 1168 AISLLRVLPFDDNICLREPCENYMKCVSVLRFDSSAPFLASDSVLFRPIHPVNGLRCRCPPGFTGDYCETEIDLCYSGPC 1247 (2531)
T ss_pred             HhhheeeeeccCchhhcchhHHHHhhhhheeecccCccccccceeeeeccccCceeEeCCCCCCcccccchhHhhhcCCC
Confidence            34566666677788987 8888777763                         126999999999999853  46 4689


Q ss_pred             CCCCeecC---CCceeeCCCCccCCCCcC----CCC-CCCCCCceec----CCCceeCCCC-cccCCCCc
Q psy9568          58 LNGGKCVQ---KDTCECQKGFYGLRCEFS----KCI-IPCLNGGRCK----GVNKCRCPPG-FLGDYCEI  114 (248)
Q Consensus        58 ~~~g~C~~---~~~C~C~~g~~G~~C~~~----~C~-~~C~~~g~C~----~~~~C~C~~g-~~g~~C~~  114 (248)
                      .++|.|..   .|+|.|.+||.|.+|+++    .|. ..|+++|+|.    +.+.|.|+.| |.++.|+.
T Consensus      1248 ~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~nggf~c~Cp~ge~e~prC~v 1317 (2531)
T KOG4289|consen 1248 GNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLLNGGFCCHCPYGEFEDPRCEV 1317 (2531)
T ss_pred             CCCCceEEecCceeEEecCCccccceeeecccCccccceecCCCEEeecCCCceeccCCCcccCCCceEE
Confidence            99999985   789999999999999964    354 4599999998    4578999987 55777764

>KOG4289|consensus

Probab=98.89  E-value=1.5e-09  Score=103.57  Aligned_cols=87  Identities=45%  Similarity=1.007  Sum_probs=74.1

Q ss_pred             CceeCCCCcccCCCCccCCCCCCCCCCCCCCCceee---CCCeeeCCCCCCCCCCCcCCCCCCC-CCCCCC-CccC----
Q psy9568          99 NKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYIC-PKPCKQ-GVCS----  169 (248)
Q Consensus        99 ~~C~C~~g~~g~~C~~~~~~~~~~c~~~C~~~g~C~---~~~~C~C~~g~~g~~C~~~~~~~~c-~~~C~~-g~C~----  169 (248)
                      ..|.|++||+|+.|+...+.+..   .+|.++|.|.   +.|+|.|.+||+|.+|+.......| +..|.| |+|+    
T Consensus      1222 lrCrCPpGFTgd~CeTeiDlCYs---~pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~n 1298 (2531)
T KOG4289|consen 1222 LRCRCPPGFTGDYCETEIDLCYS---GPCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLLN 1298 (2531)
T ss_pred             eeEeCCCCCCcccccchhHhhhc---CCCCCCCceEEecCceeEEecCCccccceeeecccCccccceecCCCEEeecCC
Confidence            68999999999999987765544   5999999998   6689999999999999998877888 888988 8898    


Q ss_pred             CCCeeecCCC-CccCCCCCC
Q psy9568         170 AARTCACYEG-WFGRTCSQR  188 (248)
Q Consensus       170 ~~~~C~C~~g-~~G~~C~~~  188 (248)
                      +.+.|+|+.| |+++.|+..
T Consensus      1299 ggf~c~Cp~ge~e~prC~v~ 1318 (2531)
T KOG4289|consen 1299 GGFCCHCPYGEFEDPRCEVT 1318 (2531)
T ss_pred             CceeccCCCcccCCCceEEE
Confidence            6788999877 567888754

>KOG1217|consensus

Probab=98.51  E-value=2.4e-06  Score=76.63  Aligned_cols=158  Identities=39%  Similarity=0.966  Sum_probs=88.8

Q ss_pred             CceeeCCCCcCCCCCcC--CCC---CCCCCCCeecC---CCceeeCCCCccCCCCcC---------------------CC
Q psy9568          35 DTCECQKGFYGLRCEFC--ICT---EKCLNGGKCVQ---KDTCECQKGFYGLRCEFS---------------------KC   85 (248)
Q Consensus        35 ~~C~C~~G~~G~~C~~~--~c~---~~C~~~g~C~~---~~~C~C~~g~~G~~C~~~---------------------~C   85 (248)
                      +.|.|..||.+..+...  .|.   ..|.+++.|.+   .+.|.|.++|.+..++..                     .|
T Consensus       152 ~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~~~~c  231 (487)
T KOG1217|consen  152 FRCSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETTGNGGTCVDSVACSCPPGARGPEC  231 (487)
T ss_pred             eeeeeCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCCCCCceEecceeccCCCCCCCCCc
Confidence            55666666666655532  332   23555566654   235666666665555422                     11


Q ss_pred             C---CCCCCC-ceec---CCCceeCCCCcccCCC--CccCCCCCCCCC-C-CCCCCceeeC---CCeeeCCCCCCCCCCC
Q psy9568          86 I---IPCLNG-GRCK---GVNKCRCPPGFLGDYC--EIWQRPYISKCI-I-PCLNGGRCKG---VNKCRCPPGFLGDYCE  151 (248)
Q Consensus        86 ~---~~C~~~-g~C~---~~~~C~C~~g~~g~~C--~~~~~~~~~~c~-~-~C~~~g~C~~---~~~C~C~~g~~g~~C~  151 (248)
                      .   ..+..+ +.|.   +.+.|.|.+||.+..+  ....    +.|. . +|.++++|..   .+.|.|++||+|..+.
T Consensus       232 ~~~~~~~~~~~~~c~~~~~~~~C~~~~g~~~~~~~~~~~~----~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~~  307 (487)
T KOG1217|consen  232 EVSIVECASGDGTCVNTVGSYTCRCPEGYTGDACVTCVDV----DSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLCT  307 (487)
T ss_pred             ccccccccCCCCcccccCCceeeeCCCCccccccceeeec----cccCCCCccCCCCeeecCCCcceeeCCCCCCCCCCc
Confidence            1   112222 5565   3468888888888763  1111    2222 1 3777888873   2788999999988871


Q ss_pred             cCCCCCCC-----CCCCCC-CccC-----CCCeeecCCCCccCCCCCCCCCCCCCC
Q psy9568         152 IWQRPYIC-----PKPCKQ-GVCS-----AARTCACYEGWFGRTCSQRSDSGEDKS  196 (248)
Q Consensus       152 ~~~~~~~c-----~~~C~~-g~C~-----~~~~C~C~~g~~G~~C~~~~~~~~~~~  196 (248)
                      .......|     ...|.+ +.|.     ..+.|.|..+|.|..|+...+++....
T Consensus       308 ~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g~~C~~~~~~C~~~~  363 (487)
T KOG1217|consen  308 ECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTGRRCEDSNDECASSP  363 (487)
T ss_pred             cccccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCCCccccCCccccCCc
Confidence            11122333     344665 4663     356788988888988875544444433

>KOG1217|consensus

Probab=98.35  E-value=3.3e-06  Score=75.69  Aligned_cols=120  Identities=39%  Similarity=0.982  Sum_probs=82.1

Q ss_pred             CCceeeCCCCccCCCCc--CCCC---CCCCCCceec---CCCceeCCCCcccCCCCccC--CCC-------------CCC
Q psy9568          66 KDTCECQKGFYGLRCEF--SKCI---IPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQ--RPY-------------ISK  122 (248)
Q Consensus        66 ~~~C~C~~g~~G~~C~~--~~C~---~~C~~~g~C~---~~~~C~C~~g~~g~~C~~~~--~~~-------------~~~  122 (248)
                      .+.|.|..||.+..+..  +.|.   .+|.+++.|.   ..+.|.|.++|.+..++...  ..+             ...
T Consensus       151 ~~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~~~~  230 (487)
T KOG1217|consen  151 PFRCSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETTGNGGTCVDSVACSCPPGARGPE  230 (487)
T ss_pred             ceeeeeCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCCCCCceEecceeccCCCCCCCCC
Confidence            58899999999999874  3675   3588888887   34789999999998887540  000             011


Q ss_pred             CC---CCCCCC-ceee---CCCeeeCCCCCCCCCCCcCCCCCCC-CC-CCCC-CccC---CCCeeecCCCCccCCC
Q psy9568         123 CI---IPCLNG-GRCK---GVNKCRCPPGFLGDYCEIWQRPYIC-PK-PCKQ-GVCS---AARTCACYEGWFGRTC  185 (248)
Q Consensus       123 c~---~~C~~~-g~C~---~~~~C~C~~g~~g~~C~~~~~~~~c-~~-~C~~-g~C~---~~~~C~C~~g~~G~~C  185 (248)
                      +.   ..+... +.|.   +.+.|.|.+||++..+....+.+.| .. .|.+ ++|.   +.+.|.|++||+|..|
T Consensus       231 c~~~~~~~~~~~~~c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~  306 (487)
T KOG1217|consen  231 CEVSIVECASGDGTCVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLC  306 (487)
T ss_pred             cccccccccCCCCcccccCCceeeeCCCCccccccceeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCC
Confidence            11   123322 5665   3468999999999874222234455 22 3766 8888   3499999999999998

>KOG1214|consensus

Probab=98.19  E-value=5.6e-06  Score=76.33  Aligned_cols=126  Identities=29%  Similarity=0.762  Sum_probs=80.7

Q ss_pred             CCCCCeecC----CCceeeCCCCcc--CCC-CcCCCC---CCCCCCceec---CCCceeCCCCcc--c--CCCCccCCC-
Q psy9568          57 CLNGGKCVQ----KDTCECQKGFYG--LRC-EFSKCI---IPCLNGGRCK---GVNKCRCPPGFL--G--DYCEIWQRP-  118 (248)
Q Consensus        57 C~~~g~C~~----~~~C~C~~g~~G--~~C-~~~~C~---~~C~~~g~C~---~~~~C~C~~g~~--g--~~C~~~~~~-  118 (248)
                      |..++.|..    .++|.|..||.|  ..| +.++|.   ..|..+..|+   ++++|.|..+|.  +  ..|-..... 
T Consensus       702 cdt~a~C~pg~~~~~tcecs~g~~gdgr~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pa  781 (1289)
T KOG1214|consen  702 CDTTARCHPGTGVDYTCECSSGYQGDGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPA  781 (1289)
T ss_pred             cCCCccccCCCCcceEEEEeeccCCCCCCCCChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCCC
Confidence            445556665    358999999975  556 344554   4588888897   678888888875  2  234322111 


Q ss_pred             CCCCCC---CCCCCCcee--e----CCCeeeCCCCCCCCCCCcCCCCCCC-CCCCC-CCccC---CCCeeecCCCCccC
Q psy9568         119 YISKCI---IPCLNGGRC--K----GVNKCRCPPGFLGDYCEIWQRPYIC-PKPCK-QGVCS---AARTCACYEGWFGR  183 (248)
Q Consensus       119 ~~~~c~---~~C~~~g~C--~----~~~~C~C~~g~~g~~C~~~~~~~~c-~~~C~-~g~C~---~~~~C~C~~g~~G~  183 (248)
                      ....|.   ..|.-.|++  +    +.|.|.|.|||.|+.-. ..+.++| ++.|. +.+|.   +++.|.|.+||.|.
T Consensus       782 p~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~-c~dvDeC~psrChp~A~CyntpgsfsC~C~pGy~GD  859 (1289)
T KOG1214|consen  782 PANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQ-CTDVDECSPSRCHPAATCYNTPGSFSCRCQPGYYGD  859 (1289)
T ss_pred             CCCccccCccccCcCCceEEEecCCceEEEeecCCccCCccc-cccccccCccccCCCceEecCCCcceeecccCccCC
Confidence            112221   235444443  3    45789999999986422 1234677 77786 48887   78999999999974

>KOG1214|consensus

Probab=98.12  E-value=1.1e-05  Score=74.37  Aligned_cols=120  Identities=32%  Similarity=0.785  Sum_probs=80.5

Q ss_pred             CCCCCEeecC----CceeeCCCCcC--CCCCc-CC---CCCCCCCCCeecC---CCceeeCCCCc--c--CCCC------
Q psy9568          25 CLNGGKCVQK----DTCECQKGFYG--LRCEF-CI---CTEKCLNGGKCVQ---KDTCECQKGFY--G--LRCE------   81 (248)
Q Consensus        25 C~~~g~C~~~----~~C~C~~G~~G--~~C~~-~~---c~~~C~~~g~C~~---~~~C~C~~g~~--G--~~C~------   81 (248)
                      |..++.|.+.    ++|.|..||.|  +.|.. ..   +...|..+..|++   +++|+|..||.  +  -.|-      
T Consensus       702 cdt~a~C~pg~~~~~tcecs~g~~gdgr~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pa  781 (1289)
T KOG1214|consen  702 CDTTARCHPGTGVDYTCECSSGYQGDGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPA  781 (1289)
T ss_pred             cCCCccccCCCCcceEEEEeeccCCCCCCCCChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCCC
Confidence            4455667652    58999999985  56652 22   3467999999998   56888888864  3  3442      


Q ss_pred             -cCCCC---CCCCCCceec------CCCceeCCCCcccC--CCCccCCCCCCCCC-CCCCCCceee---CCCeeeCCCCC
Q psy9568          82 -FSKCI---IPCLNGGRCK------GVNKCRCPPGFLGD--YCEIWQRPYISKCI-IPCLNGGRCK---GVNKCRCPPGF  145 (248)
Q Consensus        82 -~~~C~---~~C~~~g~C~------~~~~C~C~~g~~g~--~C~~~~~~~~~~c~-~~C~~~g~C~---~~~~C~C~~g~  145 (248)
                       .+.|.   ..|...|.+.      +.|.|.|.+||.|+  .|...     ++|. ..|...++|.   +++.|.|.+||
T Consensus       782 p~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~c~dv-----DeC~psrChp~A~CyntpgsfsC~C~pGy  856 (1289)
T KOG1214|consen  782 PANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQCTDV-----DECSPSRCHPAATCYNTPGSFSCRCQPGY  856 (1289)
T ss_pred             CCCccccCccccCcCCceEEEecCCceEEEeecCCccCCccccccc-----cccCccccCCCceEecCCCcceeecccCc
Confidence             12232   2244444443      45899999999986  34332     3343 4688888887   56899999999


Q ss_pred             CCCC
Q psy9568         146 LGDY  149 (248)
Q Consensus       146 ~g~~  149 (248)
                      .|+.
T Consensus       857 ~GDG  860 (1289)
T KOG1214|consen  857 YGDG  860 (1289)
T ss_pred             cCCC
Confidence            9863

>KOG4260|consensus

Probab=98.08  E-value=5.6e-06  Score=67.06  Aligned_cols=133  Identities=29%  Similarity=0.788  Sum_probs=83.1

Q ss_pred             eeCCCCcCCCCCcCCC--CCCCCCCCeecC------CCceeeCCCCccCCCCc----------C-------CCCCCCCCC
Q psy9568          38 ECQKGFYGLRCEFCIC--TEKCLNGGKCVQ------KDTCECQKGFYGLRCEF----------S-------KCIIPCLNG   92 (248)
Q Consensus        38 ~C~~G~~G~~C~~~~c--~~~C~~~g~C~~------~~~C~C~~g~~G~~C~~----------~-------~C~~~C~~~   92 (248)
                      -|++|-+|++|..+.-  ..+|.++|.|..      ++.|.|.+||.|..|..          +       .|..+|.  
T Consensus       131 CCp~gtyGpdCl~Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~--  208 (350)
T KOG4260|consen  131 CCPDGTYGPDCLQCPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGCL--  208 (350)
T ss_pred             ccCCCCcCCccccCCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhhh--
Confidence            4889999999986642  356888888875      56899999999999851          1       1112333  


Q ss_pred             ceecC--CCce-eCCCCcccCCCCccCCCCCCCCC---CCCCCCceee---CCCeeeCCCCCCCC--CCCcCCCCCCCCC
Q psy9568          93 GRCKG--VNKC-RCPPGFLGDYCEIWQRPYISKCI---IPCLNGGRCK---GVNKCRCPPGFLGD--YCEIWQRPYICPK  161 (248)
Q Consensus        93 g~C~~--~~~C-~C~~g~~g~~C~~~~~~~~~~c~---~~C~~~g~C~---~~~~C~C~~g~~g~--~C~~~~~~~~c~~  161 (248)
                      +.|.+  +-.| .|..||.-+.   .....+++|.   .+|..+-.|+   ++|.|...+||.+.  .|+.      |.+
T Consensus       209 ~~Csg~~~k~C~kCkkGW~lde---~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g~d~C~~------~~d  279 (350)
T KOG4260|consen  209 GVCSGESSKGCSKCKKGWKLDE---EGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKGVDECQF------CAD  279 (350)
T ss_pred             cccCCCCCCChhhhcccceecc---cccccHHHHhcCCCCCChhheeecCCCceEecccccccCChHHhhh------hhh
Confidence            24542  2344 4888997541   1112223332   3566556666   67899999999763  2222      122


Q ss_pred             CCC--CCccC---CCCeeecCCCCc
Q psy9568         162 PCK--QGVCS---AARTCACYEGWF  181 (248)
Q Consensus       162 ~C~--~g~C~---~~~~C~C~~g~~  181 (248)
                      .|.  |+.|.   +.|+|.|..|+.
T Consensus       280 ~~~~kn~~c~ni~~~~r~v~f~~~~  304 (350)
T KOG4260|consen  280 VCASKNRPCMNIDGQYRCVCFSGLI  304 (350)
T ss_pred             hcccCCCCcccCCccEEEEecccce
Confidence            232  35554   578999998876

>KOG0994|consensus

Probab=97.86  E-value=6.5e-05  Score=71.62  Aligned_cols=94  Identities=33%  Similarity=0.809  Sum_probs=57.2

Q ss_pred             ceec-CCCceeCCCCcccCCCCccCCCC-----CCCCCCCC----CCCceeeC-CCeeeCCCCCCCCCCCcCCC-----C
Q psy9568          93 GRCK-GVNKCRCPPGFLGDYCEIWQRPY-----ISKCIIPC----LNGGRCKG-VNKCRCPPGFLGDYCEIWQR-----P  156 (248)
Q Consensus        93 g~C~-~~~~C~C~~g~~g~~C~~~~~~~-----~~~c~~~C----~~~g~C~~-~~~C~C~~g~~g~~C~~~~~-----~  156 (248)
                      +.|+ .+++|.|.+...|..|+......     ...|. +|    ..+..|.. .++|+|.|||-|..|+...+     +
T Consensus      1030 ~~CDr~tGQCpClpNv~G~~CDqCA~N~w~laSG~GCe-~C~Cd~~~~pqCN~ftGQCqCkpGfGGR~C~qCqel~WGdP 1108 (1758)
T KOG0994|consen 1030 CHCDRFTGQCPCLPNVQGVRCDQCAENHWNLASGEGCE-PCNCDPIGGPQCNEFTGQCQCKPGFGGRTCSQCQELYWGDP 1108 (1758)
T ss_pred             cccccccCcCCCCcccccccccccccchhccccCCCCC-ccCCCccCCccccccccceeccCCCCCcchhHHHHhhcCCC
Confidence            3444 45799999999999887533211     11111 11    22334542 36899999999988876211     1


Q ss_pred             -CCC-CCCCCC-C----ccC-CCCeeecCCCCccCCCCC
Q psy9568         157 -YIC-PKPCKQ-G----VCS-AARTCACYEGWFGRTCSQ  187 (248)
Q Consensus       157 -~~c-~~~C~~-g----~C~-~~~~C~C~~g~~G~~C~~  187 (248)
                       ..| .-.|.. |    .|. .+++|.|.+|..|..|++
T Consensus      1109 ~~~C~aCdCd~rG~~tpQCdr~tG~C~C~~Gv~G~rCdq 1147 (1758)
T KOG0994|consen 1109 NEKCRACDCDPRGIETPQCDRATGRCVCRPGVGGPRCDQ 1147 (1758)
T ss_pred             CCCceecCCCCCCCCCCCccccCCceeecCCCCCcchhh
Confidence             112 222321 2    455 688999999999998864

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.80  E-value=2.6e-05  Score=42.76  Aligned_cols=25  Identities=36%  Similarity=0.996  Sum_probs=18.6

Q ss_pred             CCCCCCEeecC-CceeeCCCCcCCCC
Q psy9568          24 KCLNGGKCVQK-DTCECQKGFYGLRC   48 (248)
Q Consensus        24 ~C~~~g~C~~~-~~C~C~~G~~G~~C   48 (248)
                      .|+++|+|+.. +.|.|++||+|+.|
T Consensus         7 ~C~~~G~C~~~~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    7 ICSGHGTCVSPCGRCVCDSGYTGPDC   32 (32)
T ss_pred             ccCCCCEEeCCCCEEECCCCCcCCCC
Confidence            57777888754 77888888887765

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>KOG4260|consensus

Probab=97.75  E-value=2.7e-05  Score=63.16  Aligned_cols=107  Identities=36%  Similarity=0.866  Sum_probs=69.3

Q ss_pred             eCCCCccCCCCcCCCC----CCCCCCceec------CCCceeCCCCcccCCCCccCCCCC----C-------CCCCCCCC
Q psy9568          71 CQKGFYGLRCEFSKCI----IPCLNGGRCK------GVNKCRCPPGFLGDYCEIWQRPYI----S-------KCIIPCLN  129 (248)
Q Consensus        71 C~~g~~G~~C~~~~C~----~~C~~~g~C~------~~~~C~C~~g~~g~~C~~~~~~~~----~-------~c~~~C~~  129 (248)
                      |++|-+|+.|.  .|+    .+|..+|.|.      +++.|.|.+||.|+.|..-.+.+-    +       .|...|. 
T Consensus       132 Cp~gtyGpdCl--~Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~-  208 (350)
T KOG4260|consen  132 CPDGTYGPDCL--QCPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGCL-  208 (350)
T ss_pred             cCCCCcCCccc--cCCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhhh-
Confidence            78899999997  343    6788889997      468999999999998864322110    0       0111222 


Q ss_pred             CceeeCC--Cee-eCCCCCCCCCCCcCCCCCCC---CCCCCC-CccC---CCCeeecCCCCcc
Q psy9568         130 GGRCKGV--NKC-RCPPGFLGDYCEIWQRPYIC---PKPCKQ-GVCS---AARTCACYEGWFG  182 (248)
Q Consensus       130 ~g~C~~~--~~C-~C~~g~~g~~C~~~~~~~~c---~~~C~~-g~C~---~~~~C~C~~g~~G  182 (248)
                       +.|.+.  -.| .|..||.-.. ...+++++|   +.+|.. -.|+   ++|+|.+.+||.+
T Consensus       209 -~~Csg~~~k~C~kCkkGW~lde-~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~  269 (350)
T KOG4260|consen  209 -GVCSGESSKGCSKCKKGWKLDE-EGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK  269 (350)
T ss_pred             -cccCCCCCCChhhhcccceecc-cccccHHHHhcCCCCCChhheeecCCCceEecccccccC
Confidence             234421  234 6888996651 223456666   455543 4565   7999999999986

>KOG0994|consensus

Probab=97.49  E-value=0.00092  Score=64.15  Aligned_cols=54  Identities=30%  Similarity=0.826  Sum_probs=31.1

Q ss_pred             CCEeec-CCceeeCCCCcCCCCCcCCC----------C-CCCCCCC----eecC-CCceeeCCCCccCCCC
Q psy9568          28 GGKCVQ-KDTCECQKGFYGLRCEFCIC----------T-EKCLNGG----KCVQ-KDTCECQKGFYGLRCE   81 (248)
Q Consensus        28 ~g~C~~-~~~C~C~~G~~G~~C~~~~c----------~-~~C~~~g----~C~~-~~~C~C~~g~~G~~C~   81 (248)
                      .++|.. .|+|.|.|+..|+.|+.+.-          . -.|..-|    .|.. +++|.|.+|-+|..|+
T Consensus       774 S~vCn~~GGqCqCkPnVVGR~CdqCApGtyGFGPsGCk~CdC~~~Gs~~~~Cd~~tGQC~C~~g~ygrqCn  844 (1758)
T KOG0994|consen  774 SSVCNPNGGQCQCKPNVVGRRCDQCAPGTYGFGPSGCKACDCNSIGSLDKYCDKITGQCQCRPGTYGRQCN  844 (1758)
T ss_pred             cccccCCCceecccCccccccccccCCcccCcCCccCccccccccccccccccccccceeeccccchhhcc
Confidence            345653 47899999988888874321          0 0122222    2222 5677777777776664

>smart00051 DSL delta serrate ligand

Probab=97.29  E-value=0.00035  Score=44.74  Aligned_cols=43  Identities=23%  Similarity=0.676  Sum_probs=26.0

Q ss_pred             eeCCCCcCCCCCc-CCCCCCCCCCCeecCCCceeeCCCCccCCC
Q psy9568          38 ECQKGFYGLRCEF-CICTEKCLNGGKCVQKDTCECQKGFYGLRC   80 (248)
Q Consensus        38 ~C~~G~~G~~C~~-~~c~~~C~~~g~C~~~~~C~C~~g~~G~~C   80 (248)
                      .|+++|+|..|+. +.+.....++..|...+.+.|.+||.|..|
T Consensus        20 ~C~~~~yG~~C~~~C~~~~d~~~~~~Cd~~G~~~C~~Gw~G~~C   63 (63)
T smart00051       20 TCDENYYGEGCNKFCRPRDDFFGHYTCDENGNKGCLEGWMGPYC   63 (63)
T ss_pred             eCCCCCcCCccCCEeCcCccccCCccCCcCCCEecCCCCcCCCC
Confidence            5667777777752 112223455666666666777777777654

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.25  E-value=0.00034  Score=38.29  Aligned_cols=26  Identities=35%  Similarity=0.970  Sum_probs=21.2

Q ss_pred             CCCCCCCeecCC-CceeeCCCCccCCC
Q psy9568          55 EKCLNGGKCVQK-DTCECQKGFYGLRC   80 (248)
Q Consensus        55 ~~C~~~g~C~~~-~~C~C~~g~~G~~C   80 (248)
                      ..|+++|+|+.. ++|.|.+||+|..|
T Consensus         6 ~~C~~~G~C~~~~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    6 NICSGHGTCVSPCGRCVCDSGYTGPDC   32 (32)
T ss_pred             CccCCCCEEeCCCCEEECCCCCcCCCC
Confidence            358888999874 88999999988775

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=96.98  E-value=0.00027  Score=38.78  Aligned_cols=25  Identities=48%  Similarity=1.148  Sum_probs=18.3

Q ss_pred             cCCCCCCEeec----CCceeeCCCCcCCC
Q psy9568          23 EKCLNGGKCVQ----KDTCECQKGFYGLR   47 (248)
Q Consensus        23 ~~C~~~g~C~~----~~~C~C~~G~~G~~   47 (248)
                      ++|.++|.|++    .+.|.|++||+|++
T Consensus         4 ~~C~n~g~C~~~~~~~y~C~C~~G~~G~~   32 (32)
T PF00008_consen    4 NPCQNGGTCIDLPGGGYTCECPPGYTGKR   32 (32)
T ss_dssp             TSSTTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred             CcCCCCeEEEeCCCCCEEeECCCCCccCC
Confidence            37888888874    25788888888763

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=96.89  E-value=0.00039  Score=29.90  Aligned_cols=12  Identities=42%  Similarity=1.340  Sum_probs=7.1

Q ss_pred             eeeCCCCcCCCC
Q psy9568          37 CECQKGFYGLRC   48 (248)
Q Consensus        37 C~C~~G~~G~~C   48 (248)
                      |+|++||+|++|
T Consensus         2 C~C~~G~~G~~C   13 (13)
T PF12661_consen    2 CQCPPGWTGPNC   13 (13)
T ss_dssp             EEE-TTEETTTT
T ss_pred             ccCcCCCcCCCC
Confidence            666666666655

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=96.85  E-value=0.00053  Score=29.48  Aligned_cols=13  Identities=54%  Similarity=1.485  Sum_probs=8.5

Q ss_pred             eeecCCCCccCCC
Q psy9568         173 TCACYEGWFGRTC  185 (248)
Q Consensus       173 ~C~C~~g~~G~~C  185 (248)
                      +|.|++||+|.+|
T Consensus         1 ~C~C~~G~~G~~C   13 (13)
T PF12661_consen    1 TCQCPPGWTGPNC   13 (13)
T ss_dssp             EEEE-TTEETTTT
T ss_pred             CccCcCCCcCCCC
Confidence            4677777777765

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=96.73  E-value=0.00053  Score=37.60  Aligned_cols=22  Identities=41%  Similarity=1.158  Sum_probs=11.7

Q ss_pred             CCCC-CccC----CCCeeecCCCCccC
Q psy9568         162 PCKQ-GVCS----AARTCACYEGWFGR  183 (248)
Q Consensus       162 ~C~~-g~C~----~~~~C~C~~g~~G~  183 (248)
                      +|.| |+|+    ..|.|.|++||+|.
T Consensus         5 ~C~n~g~C~~~~~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    5 PCQNGGTCIDLPGGGYTCECPPGYTGK   31 (32)
T ss_dssp             SSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred             cCCCCeEEEeCCCCCEEeECCCCCccC
Confidence            4444 4554    34566666666654

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>smart00051 DSL delta serrate ligand

Probab=96.58  E-value=0.0035  Score=40.11  Aligned_cols=45  Identities=24%  Similarity=0.670  Sum_probs=29.5

Q ss_pred             eeeCCCCCCCCCCCcCCCCCCCCCCCC-CCccCCCCeeecCCCCccCCC
Q psy9568         138 KCRCPPGFLGDYCEIWQRPYICPKPCK-QGVCSAARTCACYEGWFGRTC  185 (248)
Q Consensus       138 ~C~C~~g~~g~~C~~~~~~~~c~~~C~-~g~C~~~~~C~C~~g~~G~~C  185 (248)
                      +-.|.++|.|..|+....   ..+... +..|...+.+.|.+||+|..|
T Consensus        18 rv~C~~~~yG~~C~~~C~---~~~d~~~~~~Cd~~G~~~C~~Gw~G~~C   63 (63)
T smart00051       18 RVTCDENYYGEGCNKFCR---PRDDFFGHYTCDENGNKGCLEGWMGPYC   63 (63)
T ss_pred             EeeCCCCCcCCccCCEeC---cCccccCCccCCcCCCEecCCCCcCCCC
Confidence            456888888888875322   112222 356766677888899988776

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=96.27  E-value=0.0059  Score=34.60  Aligned_cols=25  Identities=48%  Similarity=1.210  Sum_probs=16.6

Q ss_pred             CCCCCCEeecC---CceeeCCCCc-CCCC
Q psy9568          24 KCLNGGKCVQK---DTCECQKGFY-GLRC   48 (248)
Q Consensus        24 ~C~~~g~C~~~---~~C~C~~G~~-G~~C   48 (248)
                      +|.++|.|++.   +.|.|++||. |..|
T Consensus        10 ~C~~~~~C~~~~g~~~C~C~~g~~~g~~C   38 (39)
T smart00179       10 PCQNGGTCVNTVGSYRCECPPGYTDGRNC   38 (39)
T ss_pred             CcCCCCEeECCCCCeEeECCCCCccCCcC
Confidence            57666777642   4677777777 6655

>KOG1836|consensus

Probab=96.13  E-value=0.081  Score=54.41  Aligned_cols=16  Identities=38%  Similarity=0.991  Sum_probs=13.7

Q ss_pred             CceeeCCCCcCCCCCc
Q psy9568          35 DTCECQKGFYGLRCEF   50 (248)
Q Consensus        35 ~~C~C~~G~~G~~C~~   50 (248)
                      ..|.|+.||+|..|+.
T Consensus       695 e~c~C~~g~tG~~Ce~  710 (1705)
T KOG1836|consen  695 EQCTCPVGYTGQFCES  710 (1705)
T ss_pred             hhccCCCCcccchhhh
Confidence            3599999999999973

>KOG1218|consensus

Probab=96.06  E-value=0.23  Score=42.21  Aligned_cols=151  Identities=27%  Similarity=0.621  Sum_probs=72.9

Q ss_pred             CCceeeCCCCcCC-CCCcCC----CCCCCCCCCeecCCCceeeCCCCccCCCCcCC-C--C-CCCCCCceec-----CCC
Q psy9568          34 KDTCECQKGFYGL-RCEFCI----CTEKCLNGGKCVQKDTCECQKGFYGLRCEFSK-C--I-IPCLNGGRCK-----GVN   99 (248)
Q Consensus        34 ~~~C~C~~G~~G~-~C~~~~----c~~~C~~~g~C~~~~~C~C~~g~~G~~C~~~~-C--~-~~C~~~g~C~-----~~~   99 (248)
                      .+.|.|.++|+|. .+....    +...+..   -.+...|.+..+|.+..|.+.. .  . ..|...+.|.     ...
T Consensus        14 ~~~c~c~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~c~~~~~~~~~   90 (316)
T KOG1218|consen   14 SGQCFCDPGYTGRLQCEHQAVTSACSGICPC---EVNSGECGLGYGFVGSVCRIECVCGNAGGGCSQPCRCKNGGTCVSS   90 (316)
T ss_pred             CCceecCCCccccccccCCCCCccccccCCc---cCCceeEecccccCCCccccccccCCCCCcccCccccCCCCcccCC
Confidence            4678888888885 222100    1111111   1224567777888887775321 0  0 1122222222     112


Q ss_pred             ceeC-CCCcccCCCCccCCCCCCCCCCCCCCCceeeCCC-eeeCCCCCCCCCCCc-CCCCCCCCCCCCC-Ccc-CCCCee
Q psy9568         100 KCRC-PPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVN-KCRCPPGFLGDYCEI-WQRPYICPKPCKQ-GVC-SAARTC  174 (248)
Q Consensus       100 ~C~C-~~g~~g~~C~~~~~~~~~~c~~~C~~~g~C~~~~-~C~C~~g~~g~~C~~-~~~~~~c~~~C~~-g~C-~~~~~C  174 (248)
                      ...+ ..+|.|..|+......     ..|.. .+|.... .|.+..+|.+..|.. ......|...|.+ ..+ .....|
T Consensus        91 ~~~~~~~~~~g~~C~~~~~~~-----~~c~~-~~C~~~~~~c~~~~~~~~~~C~~~~~~g~~C~~~c~~~~~~~~~~~~c  164 (316)
T KOG1218|consen   91 TGYCHLNGYEGPQCESPCPCG-----DGCAE-KTCANPRRECRCGGGYIGEQCGEENLVGLKCQRDCQCTGGCDCKNGIC  164 (316)
T ss_pred             CCcccCCCCCcccccCCCCcC-----Ccccc-cccCCCccceecCCcCccccccccCCCCCCccCCCCCccccCCCCCce
Confidence            2233 5677777776532110     11222 3344323 366666666666655 2222334333422 222 256778


Q ss_pred             ecCCCCccCCCCCCCCCCC
Q psy9568         175 ACYEGWFGRTCSQRSDSGE  193 (248)
Q Consensus       175 ~C~~g~~G~~C~~~~~~~~  193 (248)
                      .|.+||.|..+......+.
T Consensus       165 ~c~~g~~g~~~~~~~~~c~  183 (316)
T KOG1218|consen  165 TCQPGFVGVFCVESCSGCS  183 (316)
T ss_pred             eccCCcccccccccCCCcC
Confidence            8888888888766544333

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=95.86  E-value=0.011  Score=33.50  Aligned_cols=25  Identities=40%  Similarity=1.198  Sum_probs=15.9

Q ss_pred             CCCCC-CccC---CCCeeecCCCCc-cCCC
Q psy9568         161 KPCKQ-GVCS---AARTCACYEGWF-GRTC  185 (248)
Q Consensus       161 ~~C~~-g~C~---~~~~C~C~~g~~-G~~C  185 (248)
                      .+|.+ +.|.   ++|.|.|++||+ |..|
T Consensus         9 ~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C   38 (39)
T smart00179        9 NPCQNGGTCVNTVGSYRCECPPGYTDGRNC   38 (39)
T ss_pred             CCcCCCCEeECCCCCeEeECCCCCccCCcC
Confidence            34544 4565   566777777777 6665

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=95.84  E-value=0.012  Score=32.82  Aligned_cols=25  Identities=44%  Similarity=1.165  Sum_probs=16.3

Q ss_pred             CCCCCCEeecC---CceeeCCCCcCCCC
Q psy9568          24 KCLNGGKCVQK---DTCECQKGFYGLRC   48 (248)
Q Consensus        24 ~C~~~g~C~~~---~~C~C~~G~~G~~C   48 (248)
                      +|.+++.|++.   +.|.|++||.|..|
T Consensus        10 ~C~~~~~C~~~~~~~~C~C~~g~~g~~C   37 (38)
T cd00054          10 PCQNGGTCVNTVGSYRCSCPPGYTGRNC   37 (38)
T ss_pred             CcCCCCEeECCCCCeEeECCCCCcCCcC
Confidence            56666777642   46777777777655

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=95.39  E-value=0.019  Score=31.44  Aligned_cols=26  Identities=42%  Similarity=1.069  Sum_probs=19.2

Q ss_pred             cCCCCCCEeec---CCceeeCCCCcCC-CC
Q psy9568          23 EKCLNGGKCVQ---KDTCECQKGFYGL-RC   48 (248)
Q Consensus        23 ~~C~~~g~C~~---~~~C~C~~G~~G~-~C   48 (248)
                      .+|.+++.|++   .+.|.|+.||.|. .|
T Consensus         6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~~~C   35 (36)
T cd00053           6 NPCSNGGTCVNTPGSYRCVCPPGYTGDRSC   35 (36)
T ss_pred             CCCCCCCEEecCCCCeEeECCCCCcccCCc
Confidence            46777788876   3678888888877 54

>KOG1218|consensus

Probab=95.12  E-value=0.53  Score=39.97  Aligned_cols=144  Identities=28%  Similarity=0.647  Sum_probs=71.7

Q ss_pred             CceeeCCCCcCCCCCcCCC----CCCCCCCCeecC-----CCceee-CCCCccCCCCcC-CCCCCCCCCceecCCC-cee
Q psy9568          35 DTCECQKGFYGLRCEFCIC----TEKCLNGGKCVQ-----KDTCEC-QKGFYGLRCEFS-KCIIPCLNGGRCKGVN-KCR  102 (248)
Q Consensus        35 ~~C~C~~G~~G~~C~~~~c----~~~C~~~g~C~~-----~~~C~C-~~g~~G~~C~~~-~C~~~C~~~g~C~~~~-~C~  102 (248)
                      +.|.+..+|.|..|.+..-    ...|...+.|..     .....+ ..+|.|..|+.+ .|...|.. -+|.... .|.
T Consensus        49 ~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~g~~C~~~~~~~~~c~~-~~C~~~~~~c~  127 (316)
T KOG1218|consen   49 GECGLGYGFVGSVCRIECVCGNAGGGCSQPCRCKNGGTCVSSTGYCHLNGYEGPQCESPCPCGDGCAE-KTCANPRRECR  127 (316)
T ss_pred             eeEecccccCCCccccccccCCCCCcccCccccCCCCcccCCCCcccCCCCCcccccCCCCcCCcccc-cccCCCcccee
Confidence            5678888888888764221    112333333332     123344 578888888642 22211222 3444333 466


Q ss_pred             CCCCcccCCCCccCCCCCCCCCCCCCCCceee-CCCeeeCCCCCCCCCCCcCCCCCCCCCCCCC-CccC-CCCeeecCCC
Q psy9568         103 CPPGFLGDYCEIWQRPYISKCIIPCLNGGRCK-GVNKCRCPPGFLGDYCEIWQRPYICPKPCKQ-GVCS-AARTCACYEG  179 (248)
Q Consensus       103 C~~g~~g~~C~~~~~~~~~~c~~~C~~~g~C~-~~~~C~C~~g~~g~~C~~~~~~~~c~~~C~~-g~C~-~~~~C~C~~g  179 (248)
                      +..+|.+..|... ......|...|.+...+. ....|.|.+||.|..+........-...|.+ +.|. ....+.+.++
T Consensus       128 ~~~~~~~~~C~~~-~~~g~~C~~~c~~~~~~~~~~~~c~c~~g~~g~~~~~~~~~c~~~~~~~~g~~C~~~~~~~~~~~~  206 (316)
T KOG1218|consen  128 CGGGYIGEQCGEE-NLVGLKCQRDCQCTGGCDCKNGICTCQPGFVGVFCVESCSGCSPLTACENGAKCNRSTGSCLCYPG  206 (316)
T ss_pred             cCCcCcccccccc-CCCCCCccCCCCCccccCCCCCceeccCCcccccccccCCCcCCCcccCCCCeeeccccccccCCC
Confidence            6677777666641 111122222332222222 3467889999999888764332111344445 3665 3334444444


Q ss_pred             C
Q psy9568         180 W  180 (248)
Q Consensus       180 ~  180 (248)
                      +
T Consensus       207 ~  207 (316)
T KOG1218|consen  207 P  207 (316)
T ss_pred             C
Confidence            4

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=94.75  E-value=0.038  Score=30.69  Aligned_cols=24  Identities=42%  Similarity=1.252  Sum_probs=14.9

Q ss_pred             CCCC-CccC---CCCeeecCCCCccCCC
Q psy9568         162 PCKQ-GVCS---AARTCACYEGWFGRTC  185 (248)
Q Consensus       162 ~C~~-g~C~---~~~~C~C~~g~~G~~C  185 (248)
                      +|.+ +.|.   +.+.|.|++||.|..|
T Consensus        10 ~C~~~~~C~~~~~~~~C~C~~g~~g~~C   37 (38)
T cd00054          10 PCQNGGTCVNTVGSYRCSCPPGYTGRNC   37 (38)
T ss_pred             CcCCCCEeECCCCCeEeECCCCCcCCcC
Confidence            4443 4554   4567777777777665

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=94.51  E-value=0.032  Score=28.24  Aligned_cols=11  Identities=36%  Similarity=0.920  Sum_probs=7.0

Q ss_pred             CCeeecCCCCc
Q psy9568         171 ARTCACYEGWF  181 (248)
Q Consensus       171 ~~~C~C~~g~~  181 (248)
                      +|+|.|++||.
T Consensus         1 sy~C~C~~Gy~   11 (24)
T PF12662_consen    1 SYTCSCPPGYQ   11 (24)
T ss_pred             CEEeeCCCCCc
Confidence            35666666665

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=94.46  E-value=0.014  Score=32.83  Aligned_cols=23  Identities=30%  Similarity=0.811  Sum_probs=16.2

Q ss_pred             CCCCCCEeecC---CceeeCCCCcCC
Q psy9568          24 KCLNGGKCVQK---DTCECQKGFYGL   46 (248)
Q Consensus        24 ~C~~~g~C~~~---~~C~C~~G~~G~   46 (248)
                      .|+.++.|++.   +.|.|++||.|+
T Consensus         7 ~C~~nA~C~~~~~~~~C~C~~Gy~Gd   32 (36)
T PF12947_consen    7 GCHPNATCTNTGGSYTCTCKPGYEGD   32 (36)
T ss_dssp             GS-TTCEEEE-TTSEEEEE-CEEECC
T ss_pred             CCCCCcEeecCCCCEEeECCCCCccC
Confidence            68888899863   678888888875

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>smart00181 EGF Epidermal growth factor-like domain

Probab=94.29  E-value=0.06  Score=29.61  Aligned_cols=24  Identities=46%  Similarity=1.211  Sum_probs=14.5

Q ss_pred             CCCCCCEeec---CCceeeCCCCcC-CCC
Q psy9568          24 KCLNGGKCVQ---KDTCECQKGFYG-LRC   48 (248)
Q Consensus        24 ~C~~~g~C~~---~~~C~C~~G~~G-~~C   48 (248)
                      +|.++ .|++   .+.|.|++||.| ..|
T Consensus         7 ~C~~~-~C~~~~~~~~C~C~~g~~g~~~C   34 (35)
T smart00181        7 PCSNG-TCINTPGSYTCSCPPGYTGDKRC   34 (35)
T ss_pred             CCCCC-EEECCCCCeEeECCCCCccCCcc
Confidence            46555 6664   256777777776 544

>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

Probab=94.07  E-value=0.062  Score=32.57  Aligned_cols=15  Identities=40%  Similarity=1.048  Sum_probs=8.8

Q ss_pred             CceeeCCCCcCCCCC
Q psy9568          35 DTCECQKGFYGLRCE   49 (248)
Q Consensus        35 ~~C~C~~G~~G~~C~   49 (248)
                      ++|.|.++|+|..|+
T Consensus        19 G~C~C~~~~~G~~C~   33 (50)
T cd00055          19 GQCECKPNTTGRRCD   33 (50)
T ss_pred             CEEeCCCcCCCCCCC
Confidence            556666666665554

>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates

Probab=93.37  E-value=0.026  Score=36.12  Aligned_cols=44  Identities=23%  Similarity=0.658  Sum_probs=16.8

Q ss_pred             ceeeCCCCcCCCCCcCCCCC--CCCCCCeecCCCceeeCCCCccCCC
Q psy9568          36 TCECQKGFYGLRCEFCICTE--KCLNGGKCVQKDTCECQKGFYGLRC   80 (248)
Q Consensus        36 ~C~C~~G~~G~~C~~~~c~~--~C~~~g~C~~~~~C~C~~g~~G~~C   80 (248)
                      .-.|.+.|+|+.|.. .|.+  .-..+-+|...+.-.|.+||.|+.|
T Consensus        18 rv~C~~nyyG~~C~~-~C~~~~d~~ghy~Cd~~G~~~C~~Gw~G~~C   63 (63)
T PF01414_consen   18 RVVCDENYYGPNCSK-FCKPRDDSFGHYTCDSNGNKVCLPGWTGPNC   63 (63)
T ss_dssp             -----TTEETTTT-E-E---EEETTEEEEE-SS--EEE-TTEESTTS
T ss_pred             EEECCCCCCCccccC-CcCCCcCCcCCcccCCCCCCCCCCCCcCCCC
Confidence            445666677776652 1211  1123345555555666666666554

In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=93.34  E-value=0.1  Score=28.36  Aligned_cols=23  Identities=43%  Similarity=1.032  Sum_probs=14.7

Q ss_pred             CCCCCCeecC---CCceeeCCCCccC
Q psy9568          56 KCLNGGKCVQ---KDTCECQKGFYGL   78 (248)
Q Consensus        56 ~C~~~g~C~~---~~~C~C~~g~~G~   78 (248)
                      +|.+++.|++   .+.|.|+.||.|.
T Consensus         7 ~C~~~~~C~~~~~~~~C~C~~g~~g~   32 (36)
T cd00053           7 PCSNGGTCVNTPGSYRCVCPPGYTGD   32 (36)
T ss_pred             CCCCCCEEecCCCCeEeECCCCCccc
Confidence            4555666665   4567777777666

>KOG1836|consensus

Probab=93.17  E-value=0.19  Score=51.78  Aligned_cols=14  Identities=43%  Similarity=1.134  Sum_probs=12.3

Q ss_pred             ceeeCCCCccCCCC
Q psy9568          68 TCECQKGFYGLRCE   81 (248)
Q Consensus        68 ~C~C~~g~~G~~C~   81 (248)
                      .|.|+.||.|..|+
T Consensus       696 ~c~C~~g~tG~~Ce  709 (1705)
T KOG1836|consen  696 QCTCPVGYTGQFCE  709 (1705)
T ss_pred             hccCCCCcccchhh
Confidence            58999999999987

>smart00181 EGF Epidermal growth factor-like domain

Probab=93.07  E-value=0.088  Score=28.91  Aligned_cols=16  Identities=38%  Similarity=1.080  Sum_probs=9.5

Q ss_pred             CCCeeecCCCCcc-CCC
Q psy9568         170 AARTCACYEGWFG-RTC  185 (248)
Q Consensus       170 ~~~~C~C~~g~~G-~~C  185 (248)
                      +.+.|.|++||.| ..|
T Consensus        18 ~~~~C~C~~g~~g~~~C   34 (35)
T smart00181       18 GSYTCSCPPGYTGDKRC   34 (35)
T ss_pred             CCeEeECCCCCccCCcc
Confidence            3566666666666 443

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=92.88  E-value=0.044  Score=31.89  Aligned_cols=21  Identities=29%  Similarity=0.904  Sum_probs=16.5

Q ss_pred             CCCC-CCccC---CCCeeecCCCCc
Q psy9568         161 KPCK-QGVCS---AARTCACYEGWF  181 (248)
Q Consensus       161 ~~C~-~g~C~---~~~~C~C~~g~~  181 (248)
                      ..|. ++.|+   ++|.|.|++||.
T Consensus        10 ~~C~~~~~C~N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen   10 HNCPENGTCVNTEGSYSCSCPPGYE   34 (42)
T ss_dssp             SSSSTTSEEEEETTEEEEEESTTEE
T ss_pred             CcCCCCCEEEcCCCCEEeeCCCCcE
Confidence            4565 37777   789999999998

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation

Probab=92.83  E-value=0.062  Score=32.35  Aligned_cols=20  Identities=35%  Similarity=0.939  Sum_probs=11.9

Q ss_pred             Eeec-CCceeeCCCCcCCCCC
Q psy9568          30 KCVQ-KDTCECQKGFYGLRCE   49 (248)
Q Consensus        30 ~C~~-~~~C~C~~G~~G~~C~   49 (248)
                      .|.. +++|.|.++|+|+.|+
T Consensus        12 ~C~~~~G~C~C~~~~~G~~C~   32 (49)
T PF00053_consen   12 TCDPSTGQCVCKPGTTGPRCD   32 (49)
T ss_dssp             SEEETCEEESBSTTEESTTS-
T ss_pred             cccCCCCEEeccccccCCcCc
Confidence            4553 3566666666666665

They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=92.61  E-value=0.072  Score=30.97  Aligned_cols=21  Identities=33%  Similarity=1.012  Sum_probs=12.6

Q ss_pred             CCCCCCEeecC---CceeeCCCCc
Q psy9568          24 KCLNGGKCVQK---DTCECQKGFY   44 (248)
Q Consensus        24 ~C~~~g~C~~~---~~C~C~~G~~   44 (248)
                      .|..++.|+++   |.|.|++||+
T Consensus        11 ~C~~~~~C~N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen   11 NCPENGTCVNTEGSYSCSCPPGYE   34 (42)
T ss_dssp             SSSTTSEEEEETTEEEEEESTTEE
T ss_pred             cCCCCCEEEcCCCCEEeeCCCCcE
Confidence            45556666652   5666666665

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PHA02887 EGF-like protein; Provisional

Probab=92.29  E-value=0.094  Score=37.34  Aligned_cols=28  Identities=29%  Similarity=0.822  Sum_probs=22.0

Q ss_pred             CCCCCCCccC-----CCCeeecCCCCccCCCCC
Q psy9568         160 PKPCKQGVCS-----AARTCACYEGWFGRTCSQ  187 (248)
Q Consensus       160 ~~~C~~g~C~-----~~~~C~C~~g~~G~~C~~  187 (248)
                      .+-|.+|+|.     ....|.|++||+|.+|+.
T Consensus        91 k~YCiHG~C~yI~dL~epsCrC~~GYtG~RCE~  123 (126)
T PHA02887         91 NDFCINGECMNIIDLDEKFCICNKGYTGIRCDE  123 (126)
T ss_pred             hCEeeCCEEEccccCCCceeECCCCcccCCCCc
Confidence            3557778886     567899999999999975

>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai

Probab=91.94  E-value=0.17  Score=30.01  Aligned_cols=15  Identities=40%  Similarity=1.099  Sum_probs=8.3

Q ss_pred             CceeeCCCCcCCCCC
Q psy9568          35 DTCECQKGFYGLRCE   49 (248)
Q Consensus        35 ~~C~C~~G~~G~~C~   49 (248)
                      ++|.|+++|+|+.|+
T Consensus        18 G~C~C~~~~~G~~C~   32 (46)
T smart00180       18 GQCECKPNVTGRRCD   32 (46)
T ss_pred             CEEECCCCCCCCCCC
Confidence            455555555555554

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=90.99  E-value=0.14  Score=37.17  Aligned_cols=29  Identities=28%  Similarity=0.690  Sum_probs=23.5

Q ss_pred             CCCCCCCccC-----CCCeeecCCCCccCCCCCC
Q psy9568         160 PKPCKQGVCS-----AARTCACYEGWFGRTCSQR  188 (248)
Q Consensus       160 ~~~C~~g~C~-----~~~~C~C~~g~~G~~C~~~  188 (248)
                      .+.|.||+|.     ..+.|.|..||+|.+|+..
T Consensus        50 ~~YClHG~C~yI~dl~~~~CrC~~GYtGeRCEh~   83 (139)
T PHA03099         50 DGYCLHGDCIHARDIDGMYCRCSHGYTGIRCQHV   83 (139)
T ss_pred             CCEeECCEEEeeccCCCceeECCCCcccccccce
Confidence            3557778886     6789999999999999754

>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates

Probab=90.98  E-value=0.066  Score=34.23  Aligned_cols=15  Identities=20%  Similarity=0.680  Sum_probs=4.8

Q ss_pred             ceeCCCCcccCCCCc
Q psy9568         100 KCRCPPGFLGDYCEI  114 (248)
Q Consensus       100 ~C~C~~g~~g~~C~~  114 (248)
                      +-.|...|.|+.|..
T Consensus        18 rv~C~~nyyG~~C~~   32 (63)
T PF01414_consen   18 RVVCDENYYGPNCSK   32 (63)
T ss_dssp             -----TTEETTTT-E
T ss_pred             EEECCCCCCCccccC
Confidence            334555555555543

In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=90.46  E-value=0.047  Score=42.37  Aligned_cols=79  Identities=30%  Similarity=0.690  Sum_probs=43.0

Q ss_pred             CEeec---CCceeeCCCCcC---CCCCcC-CCC------CCCCCCCeecC--------CCceeeCCCCcc--CCCCcCCC
Q psy9568          29 GKCVQ---KDTCECQKGFYG---LRCEFC-ICT------EKCLNGGKCVQ--------KDTCECQKGFYG--LRCEFSKC   85 (248)
Q Consensus        29 g~C~~---~~~C~C~~G~~G---~~C~~~-~c~------~~C~~~g~C~~--------~~~C~C~~g~~G--~~C~~~~C   85 (248)
                      |..++   .++|.|.+||..   ..|+.- .|.      -+|...+.|.+        .+.|.|.+||.-  ..|....|
T Consensus        11 G~LiQMSNHfEC~Cnegfvl~~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~vCvp~~C   90 (197)
T PF06247_consen   11 GYLIQMSNHFECKCNEGFVLKNENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQGVCVPNKC   90 (197)
T ss_dssp             EEEEEESSEEEEEESTTEEEEETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSSEEEGGG
T ss_pred             CEEEEccCceEEEcCCCcEEccccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCCeEchhhc
Confidence            55553   378999999963   344421 132      24666677764        347888888853  34444455


Q ss_pred             C-CCCCCCceec------CCCceeCCCCcc
Q psy9568          86 I-IPCLNGGRCK------GVNKCRCPPGFL  108 (248)
Q Consensus        86 ~-~~C~~~g~C~------~~~~C~C~~g~~  108 (248)
                      . ..|. .|.|+      ....|+|.-|+.
T Consensus        91 ~~~~Cg-~GKCI~d~~~~~~~~CSC~IGkV  119 (197)
T PF06247_consen   91 NNKDCG-SGKCILDPDNPNNPTCSCNIGKV  119 (197)
T ss_dssp             SS---T-TEEEEEEEGGGSEEEEEE-TEEE
T ss_pred             CceecC-CCeEEecCCCCCCceeEeeeceE
Confidence            4 3355 46675      113677777766

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=89.64  E-value=0.13  Score=28.84  Aligned_cols=23  Identities=30%  Similarity=0.811  Sum_probs=14.8

Q ss_pred             CCCCCCeecC---CCceeeCCCCccC
Q psy9568          56 KCLNGGKCVQ---KDTCECQKGFYGL   78 (248)
Q Consensus        56 ~C~~~g~C~~---~~~C~C~~g~~G~   78 (248)
                      .|+.+++|.+   .+.|.|.+||.|+
T Consensus         7 ~C~~nA~C~~~~~~~~C~C~~Gy~Gd   32 (36)
T PF12947_consen    7 GCHPNATCTNTGGSYTCTCKPGYEGD   32 (36)
T ss_dssp             GS-TTCEEEE-TTSEEEEE-CEEECC
T ss_pred             CCCCCcEeecCCCCEEeECCCCCccC
Confidence            4667777776   4578888888764

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PHA02887 EGF-like protein; Provisional

Probab=85.57  E-value=0.73  Score=32.92  Aligned_cols=23  Identities=39%  Similarity=1.159  Sum_probs=14.9

Q ss_pred             CCEee-----cCCceeeCCCCcCCCCCc
Q psy9568          28 GGKCV-----QKDTCECQKGFYGLRCEF   50 (248)
Q Consensus        28 ~g~C~-----~~~~C~C~~G~~G~~C~~   50 (248)
                      ||.|.     +...|.|+.||+|.+|+.
T Consensus        96 HG~C~yI~dL~epsCrC~~GYtG~RCE~  123 (126)
T PHA02887         96 NGECMNIIDLDEKFCICNKGYTGIRCDE  123 (126)
T ss_pred             CCEEEccccCCCceeECCCCcccCCCCc
Confidence            46664     124677777777777763

>KOG3607|consensus

Probab=85.48  E-value=0.65  Score=44.17  Aligned_cols=54  Identities=24%  Similarity=0.643  Sum_probs=38.2

Q ss_pred             CCCCCCEeecCCceeeCCCCcCCCCCcCCCCCCCCCCCeecCCCceeeCCCCccCCCCcC
Q psy9568          24 KCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFS   83 (248)
Q Consensus        24 ~C~~~g~C~~~~~C~C~~G~~G~~C~~~~c~~~C~~~g~C~~~~~C~C~~g~~G~~C~~~   83 (248)
                      .|..+-+|++ ..|.=.. ..+..+    |...|+++|+|.+...|.|.+||.++.|++.
T Consensus       605 ~Cg~~~vC~~-~~C~~~~-v~~~~~----~~~~C~g~GVCnn~~~ChC~~gwapp~C~~~  658 (716)
T KOG3607|consen  605 SCGPGMICIN-HRCLSAS-VLNSSC----CPTTCNGHGVCNNELNCHCEPGWAPPFCFIF  658 (716)
T ss_pred             ccCCCceecC-Ccchhhh-hhcccc----cccccCCCcccCCCcceeeCCCCCCCccccc
Confidence            3666667776 4554333 444333    3445999999999999999999999999853

>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

Probab=80.57  E-value=1.6  Score=26.19  Aligned_cols=16  Identities=31%  Similarity=0.787  Sum_probs=13.4

Q ss_pred             CCeeecCCCCccCCCC
Q psy9568         171 ARTCACYEGWFGRTCS  186 (248)
Q Consensus       171 ~~~C~C~~g~~G~~C~  186 (248)
                      +++|.|.++|+|..|+
T Consensus        18 ~G~C~C~~~~~G~~C~   33 (50)
T cd00055          18 TGQCECKPNTTGRRCD   33 (50)
T ss_pred             CCEEeCCCcCCCCCCC
Confidence            6788888888888886

>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function

Probab=80.19  E-value=2.6  Score=25.47  Aligned_cols=29  Identities=38%  Similarity=0.973  Sum_probs=16.3

Q ss_pred             cCCCCCcCCCCCCCCCCCeecCCCceeeCCCCc
Q psy9568          44 YGLRCEFCICTEKCLNGGKCVQKDTCECQKGFY   76 (248)
Q Consensus        44 ~G~~C~~~~c~~~C~~~g~C~~~~~C~C~~g~~   76 (248)
                      .|..|...   ..|..+..|++ +.|.|++||.
T Consensus        18 ~g~~C~~~---~qC~~~s~C~~-g~C~C~~g~~   46 (52)
T PF01683_consen   18 PGESCESD---EQCIGGSVCVN-GRCQCPPGYV   46 (52)
T ss_pred             CCCCCCCc---CCCCCcCEEcC-CEeECCCCCE
Confidence            45555532   23445666654 6777777764

It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	248
2ygq_A	324	Wif Domain-Epidermal Growth Factor (Egf)-Like Domai		2e-31
2vj3_A	135	Human Notch-1 Egfs 11-13 Length = 135		4e-07
1toz_A	116	Nmr Structure Of The Human Notch-1 Ligand Binding R		2e-06
2vj2_A	169	Human Jagged-1, Domains Dsl And Egfs1-3 Length = 16		6e-05
2wft_A	458	Crystal Structure Of The Human Hip Ectodomain Lengt		5e-04
3ho3_A	481	Crystal Structure Of Hedgehog-interacting Protein (		7e-04
2wg3_C	463	Crystal Structure Of The Complex Between Human Hedg		7e-04
2wg4_B	457	Crystal Structure Of The Complex Between Human Hedg		7e-04
3ho4_A	481	Crystal Structure Of Hedgehog-Interacting Protein (		7e-04

>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3 Of Human Wnt Inhibitory Factor 1 In Complex With 1,2-Dipalmitoylphosphatidylcholine Length = 324

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/171 (43%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
Query: 21  CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
           C   C NGG C ++  CEC  GF+G  CE  +CT +C+NGG CV    C C  GFYG+ C
Sbjct: 151 CPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNC 210
Query: 81  EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCR 140
           + + C   C NGG C    KC CPPG  G+ CE      ISKC  PC NGG+C G +KC+
Sbjct: 211 DKANCSTTCFNGGTCFYPGKCICPPGLEGEQCE------ISKCPQPCRNGGKCIGKSKCK 264
Query: 141 CPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTCSQRSDS 191
           C  G+ GD C    +P   P     G C     C C EGW GR C++R ++
Sbjct: 265 CSKGYQGDLCS---KPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEA 312

>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13 Length = 135

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 15/108 (13%)
Query: 57  CLNGGKCVQKD---TCECQKGFYGLRCEF--SKCII-PCLNGGRCK---GVNKCRCPPGF 107
           C + GKC+       C+C +G+ G RCE   ++C+  PC N   C    G  +C C PG+
Sbjct: 15  CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY 74
Query: 108 LGDYCEIWQRPYISKCIIPCLNGGRC-KGVN--KCRCPPGFLGDYCEI 152
            G +CE+      S    PCL+ GRC   +N  +C CP GF G  C++
Sbjct: 75  EGVHCEVNTDECASS---PCLHNGRCLDKINEFQCECPTGFTGHLCQV 119

>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region Length = 116

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 15/107 (14%)
Query: 57  CLNGGKCVQ---KDTCECQKGFYGLRCEF--SKCII-PCLNGGRCK---GVNKCRCPPGF 107
           C + GKC+       C+C +G+ G RCE   ++C+  PC N   C    G  +C C PG+
Sbjct: 13  CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY 72
Query: 108 LGDYCEIWQRPYISKCIIPCLNGGRC-KGVN--KCRCPPGFLGDYCE 151
            G +CE+      S    PCL+ GRC   +N  +C CP GF G  C+
Sbjct: 73  EGVHCEVNTDECASS---PCLHNGRCLDKINEFQCECPTGFTGHLCQ 116

>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3 Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 30  KCVQKDTCECQKGFYGLRCEFCICTEKCL-NGGKCVQKDTCECQKGFYGLRCEFSKCI-I 87
            C Q     C +G+ G  C   IC + C    G C     C CQ G+ GL C+  KCI  
Sbjct: 45  ACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCD--KCIPH 102
Query: 88  PCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVN----KCRCPP 143
           P    G C    +C C   + G  C+  +         PCLNGG C        +C CP 
Sbjct: 103 PGCVHGICNEPWQCLCETNWGGQLCD--KDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPE 160
Query: 144 GFLGDYCEI 152
           G+ G  CEI
Sbjct: 161 GYSGPNCEI 169

>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain Length = 458

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 70  ECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLN 129
           EC+      +   S+C   C NG  C    KC C PG+ GD+C        +KC   C +
Sbjct: 380 ECRATVQPAQTLTSECSRLCRNG-YCTPTGKCCCSPGWEGDFCRT------AKCEPACRH 432
Query: 130 GGRCKGVNKCRCPPGFLGDYCEIWQR 155
           GG C   NKC C  G+LG  CE   R
Sbjct: 433 GGVCVRPNKCLCKKGYLGPQCEQVDR 458

>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip) Length = 481

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 70  ECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLN 129
           EC+      +   S+C   C NG  C    KC C PG+ GD+C        +KC   C +
Sbjct: 401 ECRATVQPAQTLTSECSRLCRNG-YCTPTGKCCCSPGWEGDFCRT------AKCEPACRH 453
Query: 130 GGRCKGVNKCRCPPGFLGDYCE 151
           GG C   NKC C  G+LG  CE
Sbjct: 454 GGVCVRPNKCLCKKGYLGPQCE 475

>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog- Interacting Protein Hip And Desert Hedgehog Without Calcium Length = 463

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 70  ECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLN 129
           EC+      +   S+C   C NG  C    KC C PG+ GD+C        +KC   C +
Sbjct: 380 ECRATVQPAQTLTSECSRLCRNG-YCTPTGKCCCSPGWEGDFCRT------AKCEPACRH 432
Query: 130 GGRCKGVNKCRCPPGFLGDYCE 151
           GG C   NKC C  G+LG  CE
Sbjct: 433 GGVCVRPNKCLCKKGYLGPQCE 454

>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip) Length = 481

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 70  ECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLN 129
           EC+      +   S+C   C NG  C    KC C PG+ GD+C        +KC   C +
Sbjct: 401 ECRATVQPAQTLTSECSRLCRNG-YCTPTGKCCCSPGWEGDFCRT------AKCEPACRH 453
Query: 130 GGRCKGVNKCRCPPGFLGDYCE 151
           GG C   NKC C  G+LG  CE
Sbjct: 454 GGVCVRPNKCLCKKGYLGPQCE 475

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	8e-42
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	4e-34
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	1e-26
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	8e-22
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	1e-18
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	5e-18
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	1e-17
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	1e-15
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	1e-12
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	3e-07
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	3e-16
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	1e-14
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	1e-10
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	5e-16
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	3e-13
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	1e-14
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	1e-12
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	5e-14
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	1e-09
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	4e-11
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	1e-07
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	5e-04
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	5e-11
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	6e-09
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	3e-08
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	2e-05
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	3e-04
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	2e-09
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	3e-09
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	1e-08
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	3e-07
2vh0_B	134	Activated factor XA light chain; serine protease,	4e-09
2vh0_B	134	Activated factor XA light chain; serine protease,	6e-09
2vh0_B	134	Activated factor XA light chain; serine protease,	1e-07
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	1e-08
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	2e-08
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	6e-06
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	1e-05
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	4e-08
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	1e-07
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	7e-07
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	1e-05
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	2e-05
1aut_L	114	Activated protein C; serine proteinase, plasma cal	2e-04
1aut_L	114	Activated protein C; serine proteinase, plasma cal	8e-04
1aut_L	114	Activated protein C; serine proteinase, plasma cal	9e-04
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	2e-04
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	2e-04
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	3e-04
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	6e-04

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score =  144 bits (364), Expect = 8e-42
 Identities = 75/175 (42%), Positives = 94/175 (53%), Gaps = 11/175 (6%)

Query: 20  ICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLR 79
            C   C NGG C ++  CEC  GF+G  CE  +CT +C+NGG CV    C C  GFYG+ 
Sbjct: 150 ECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVN 209

Query: 80  CEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKC 139
           C+ + C   C NGG C    KC CPPG  G+ CE      ISKC  PC NGG+C G +KC
Sbjct: 210 CDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCE------ISKCPQPCRNGGKCIGKSKC 263

Query: 140 RCPPGFLGDYCEIWQRPYICPKPCKQ-GVCSAARTCACYEGWFGRTCSQRSDSGE 193
           +C  G+ GD C       +C   C   G C     C C EGW GR C++R ++  
Sbjct: 264 KCSKGYQGDLCSK----PVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEASL 314

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score =  124 bits (312), Expect = 4e-34
 Identities = 59/175 (33%), Positives = 77/175 (44%), Gaps = 14/175 (8%)

Query: 18  SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYG 77
             +      + G  +       Q   +   C+   C   C NGG C ++  CEC  GF+G
Sbjct: 119 FEVDVIVMNSEGNTI---LKTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHG 175

Query: 78  LRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVN 137
             CE + C   C+NGG C     C CPPGF G  C+       + C   C NGG C    
Sbjct: 176 PHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCD------KANCSTTCFNGGTCFYPG 229

Query: 138 KCRCPPGFLGDYCEIWQRPYICPKPCKQ-GVCSAARTCACYEGWFGRTCSQRSDS 191
           KC CPPG  G+ CEI      CP+PC+  G C     C C +G+ G  CS+    
Sbjct: 230 KCICPPGLEGEQCEI----SKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCE 280

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score =  100 bits (251), Expect = 1e-26
 Identities = 43/174 (24%), Positives = 59/174 (33%), Gaps = 16/174 (9%)

Query: 21  CTEKCLNGGKCVQKDTCECQKGFYGLRCE-FCICTEKCLNGGKCVQKDTCECQKGFYGLR 79
            +    + G    +    C   +YG  C  FC   +       C Q     C +G+ G  
Sbjct: 3   GSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPE 62

Query: 80  CEFSKCI-IPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCI-IPCLNGGRCKGVN 137
           C  + C        G CK    CRC  G+ G YC+        KCI  P    G C    
Sbjct: 63  CNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCD--------KCIPHPGCVHGICNEPW 114

Query: 138 KCRCPPGFLGDYCEIWQRPYICPKPCKQG-----VCSAARTCACYEGWFGRTCS 186
           +C C   + G  C+         +PC  G            C+C EG+ G  C 
Sbjct: 115 QCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 87.8 bits (218), Expect = 8e-22
 Identities = 39/133 (29%), Positives = 50/133 (37%), Gaps = 8/133 (6%)

Query: 25  CLNGGKCVQKDTCECQKGFYGLRCEFCICTEK-CLNGGKCVQKDTCECQKGFYGLRCEFS 83
                 C Q     C +G+ G  C   IC +      G C     C CQ G+ GL C+  
Sbjct: 40  FFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKC 99

Query: 84  KCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVN----KC 139
               P    G C    +C C   + G  C+  +         PCLNGG C        +C
Sbjct: 100 IPH-PGCVHGICNEPWQCLCETNWGGQLCD--KDLNYCGTHQPCLNGGTCSNTGPDKYQC 156

Query: 140 RCPPGFLGDYCEI 152
            CP G+ G  CEI
Sbjct: 157 SCPEGYSGPNCEI 169

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 79.3 bits (196), Expect = 1e-18
 Identities = 31/139 (22%), Positives = 46/139 (33%), Gaps = 10/139 (7%)

Query: 53  CTEKCLNGGKCVQKDTCECQKGFYGLRCE-FSKCIIPCLNGGRCKGVNKCRCPPGFLGDY 111
            +    + G    +    C   +YG  C  F +          C       C  G++G  
Sbjct: 3   GSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPE 62

Query: 112 CEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAA 171
           C       I +        G CK    CRC  G+ G YC+      I    C  G+C+  
Sbjct: 63  CNR----AICRQG-CSPKHGSCKLPGDCRCQYGWQGLYCD----KCIPHPGCVHGICNEP 113

Query: 172 RTCACYEGWFGRTCSQRSD 190
             C C   W G+ C +  +
Sbjct: 114 WQCLCETNWGGQLCDKDLN 132

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 82.1 bits (202), Expect = 5e-18
 Identities = 34/180 (18%), Positives = 49/180 (27%), Gaps = 24/180 (13%)

Query: 29  GKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCV-------QKDTCECQKGFYGLRCE 81
           G+C+   +    K  YG  CE      +  NG  C            C C  GF G  C+
Sbjct: 493 GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQ 552

Query: 82  FSKCI--------IPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRC 133
             +          + C   GRC+  N C C  G+    C+         C  PC     C
Sbjct: 553 CERTTEGCLNPRRVECSGRGRCRC-NVCECHSGYQLPLCQE-----CPGCPSPCGKYISC 606

Query: 134 KGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQ-GVCSAARTCACYEGWFGRTCSQRSDSG 192
                 +   G  G  C              +   C    +  C+  +            
Sbjct: 607 --AECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYL 664

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 80.9 bits (199), Expect = 1e-17
 Identities = 51/201 (25%), Positives = 64/201 (31%), Gaps = 38/201 (18%)

Query: 18  SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCIC----------------TEKCLNGG 61
                  C   G       C C  G+ G  CE                    +  C   G
Sbjct: 430 QSRDRSLCHGKGFLEC-GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLG 488

Query: 62  KCVQKDTCECQKG------FYGLRCEFSKCIIPCLNGGRCKGVN-------KCRCPPGFL 108
            CV    C C          YG  CE         NG  C G         KCRC PGF 
Sbjct: 489 DCV-CGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFE 547

Query: 109 GDYCEIWQRPY--ISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQG 166
           G  C+  +     ++   + C   GRC+  N C C  G+    C+       CP PC + 
Sbjct: 548 GSACQCERTTEGCLNPRRVECSGRGRCRC-NVCECHSGYQLPLCQE---CPGCPSPCGKY 603

Query: 167 VCSAARTCACYEGWFGRTCSQ 187
             S A      +G FG+ CS 
Sbjct: 604 -ISCAECLKFEKGPFGKNCSA 623

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 75.1 bits (184), Expect = 1e-15
 Identities = 28/140 (20%), Positives = 44/140 (31%), Gaps = 13/140 (9%)

Query: 21  CTEKCLNGGKCV-QKDTCECQKGFYGLRCEFCICTEKCLNGGKCV-------QKDTCECQ 72
             + C   G+ +     C C  GF G  C+    TE CLN  +         + + CEC 
Sbjct: 523 NGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECH 582

Query: 73  KGFYGLRCEFSKCII-PCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGG 131
            G+    C+       PC     C      +   G  G  C         +     + G 
Sbjct: 583 SGYQLPLCQECPGCPSPCGKYISC--AECLKFEKGPFGKNCS--AACPGLQLSNNPVKGR 638

Query: 132 RCKGVNKCRCPPGFLGDYCE 151
            CK  +   C   +  +  +
Sbjct: 639 TCKERDSEGCWVAYTLEQQD 658

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 65.9 bits (160), Expect = 1e-12
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 14/131 (10%)

Query: 21  CTEKCLNGGKCVQKDTCECQKGFYGLRCEFC-ICTEKCLNGGKCVQKDTCECQKGFYGLR 79
              +C   G+C   + CEC  G+    C+ C  C   C     C +    + +KG +G  
Sbjct: 564 RRVECSGRGRCRC-NVCECHSGYQLPLCQECPGCPSPCGKYISCAE--CLKFEKGPFGKN 620

Query: 80  CEFS----KCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRC-K 134
           C  +    +     + G  CK  +   C   +  +  +        + +I       C  
Sbjct: 621 CSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGM-----DRYLIYVDESRECVA 675

Query: 135 GVNKCRCPPGF 145
           G + C     F
Sbjct: 676 GPDGCGENLYF 686

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 50.1 bits (119), Expect = 3e-07
 Identities = 33/196 (16%), Positives = 50/196 (25%), Gaps = 29/196 (14%)

Query: 25  CLNGGKCVQKDTCECQKGFYGLRCEF---CICTEKCLNGGKCVQKDTCECQKGFYGLR-- 79
           C NG     +   +C      +   F      TE        ++            L   
Sbjct: 364 CSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQC 423

Query: 80  ---CEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCI----------IP 126
              C          +G        CRC  G++G  CE   +   S+ +          I 
Sbjct: 424 ECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSII 483

Query: 127 CLNGGRCKGVNKCRCPPGFLGDYCEIWQR----PYICPKPCKQGVCSAAR------TCAC 176
           C   G C    +C C    +       Q        C +   Q      R       C C
Sbjct: 484 CSGLGDCVC-GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRC 542

Query: 177 YEGWFGRTCSQRSDSG 192
           + G+ G  C     + 
Sbjct: 543 HPGFEGSACQCERTTE 558

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 72.2 bits (178), Expect = 3e-16
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 17/109 (15%)

Query: 57  CLNGGKCVQKD---TCECQKGFYGLRCEFS--KCII-PCLNGGRCK-GVN--KCRCPPGF 107
           C + GKC+       C+C +G+ G RCE    +C+  PC N   C   +   +C C PG+
Sbjct: 15  CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY 74

Query: 108 LGDYCEIWQRPYISKCII-PCLNGGRCK-GVN--KCRCPPGFLGDYCEI 152
            G +CE+       +C   PCL+ GRC   +N  +C CP GF G  C++
Sbjct: 75  EGVHCEV----NTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 15/105 (14%)

Query: 25  CLNGGKCVQKD---TCECQKGFYGLRCEFCI--CTEK-CLNGGKCVQKD---TCECQKGF 75
           C + GKC+       C+C +G+ G RCE  +  C    C N   C+ +     C C  G+
Sbjct: 15  CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY 74

Query: 76  YGLRCEFSK--CII-PCLNGGRCK-GVN--KCRCPPGFLGDYCEI 114
            G+ CE +   C   PCL+ GRC   +N  +C CP GF G  C++
Sbjct: 75  EGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 16/114 (14%)

Query: 88  PCLNGGRCK-GVN--KCRCPPGFLGDYCEIWQRPYISKCII-PCLNGGRCK-GVN--KCR 140
           PC + G+C   +   +C+C  G+ G  CEI     +++C+  PC N   C   +   +C 
Sbjct: 14  PCEHAGKCINTLGSFECQCLQGYTGPRCEI----DVNECVSNPCQNDATCLDQIGEFQCI 69

Query: 141 CPPGFLGDYCEIWQRPYICPKPCK-QGVCS---AARTCACYEGWFGRTCSQRSD 190
           C PG+ G +CE+         PC   G C        C C  G+ G  C     
Sbjct: 70  CMPGYEGVHCEV-NTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLH 122

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 75.5 bits (185), Expect = 5e-16
 Identities = 46/199 (23%), Positives = 59/199 (29%), Gaps = 27/199 (13%)

Query: 21  CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKD-TCECQKGFYGLR 79
                L      +     C+   +G  C   +CT  C+N G C +    C C  GF G  
Sbjct: 171 YIGGNLFTSAFTRLIVRRCEAQKWGPECN-HLCTA-CMNNGVCHEDTGECICPPGFMGRT 228

Query: 80  CEFS--------------KCIIPCLNGGRCKGVN-KCRCPPGFLGDYCEIWQRPYIS--- 121
           CE +                   C +   C      C C  G+ G  C     P      
Sbjct: 229 CEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPD 288

Query: 122 -KCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVC----SAARTCAC 176
            K    C NG  C     C C PG+ G  CE    P + PK           S      C
Sbjct: 289 CKLRCSCNNGEMCDRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPIC 348

Query: 177 Y-EGWFGRTCSQRSDSGED 194
              GW   T  + +    D
Sbjct: 349 KASGWPLPTNEEMTLVKPD 367

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 67.4 bits (164), Expect = 3e-13
 Identities = 40/192 (20%), Positives = 56/192 (29%), Gaps = 21/192 (10%)

Query: 18  SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYG 77
           S I +         ++      Q    G+           L      +     C+   +G
Sbjct: 138 SFIHSVPRHEVPDILEVHLPHAQPQDAGVYS--ARYIGGNLFTSAFTRLIVRRCEAQKWG 195

Query: 78  LRCEFSKCIIPCLNGGRC-KGVNKCRCPPGFLGDYCEIWQRP--YISKCIIPCLNGGRCK 134
             C        C+N G C +   +C CPPGF+G  CE       +   C   C     CK
Sbjct: 196 PECN--HLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCK 253

Query: 135 GV-------NKCRCPPGFLGDYCEIWQRPYICPKPCKQ-------GVCSAARTCACYEGW 180
                      C C  G+ G  C     P      CK         +C   + C C  GW
Sbjct: 254 SYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGW 313

Query: 181 FGRTCSQRSDSG 192
            G  C +     
Sbjct: 314 QGLQCEREGIPR 325

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 72.0 bits (176), Expect = 1e-14
 Identities = 36/186 (19%), Positives = 47/186 (25%), Gaps = 36/186 (19%)

Query: 21  CTEKCLNGGKCVQKDTCECQKGFYGLRCEF----------CICTEKCLNGGKCVQKDTCE 70
               C   G+C+    C C    +G                   E C   G+C     C 
Sbjct: 491 GQPVCSQRGECL-CGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC-GDCL 548

Query: 71  CQKGFYGLRCEFSKCIIPCL--NGGRCKGVNKCRC------PPGFLGDYCEIWQRPYISK 122
           C   + G  C  +     C+  NG  C G  KC C       PG  GD CE         
Sbjct: 549 CDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEK-----CPT 603

Query: 123 CIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFG 182
           C   C     C       C     G   +       C    +              G   
Sbjct: 604 CPDACTFKKEC-----VECKKFDRGALHDENTCNRYCRDEIESV------KELKDTGKDA 652

Query: 183 RTCSQR 188
             C+ +
Sbjct: 653 VNCTYK 658

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 66.3 bits (161), Expect = 1e-12
 Identities = 34/198 (17%), Positives = 51/198 (25%), Gaps = 28/198 (14%)

Query: 21  CTEKCLNGGKCVQKDTCEC----QKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFY 76
               CLN        +C          + +  +   C ++             +      
Sbjct: 370 FNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQV 429

Query: 77  GLRCEFS------KCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCI------ 124
              C+ +           C NG        CRC PG+LG  CE  +  Y           
Sbjct: 430 TFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPR 489

Query: 125 ---IPCLNGGRCKGVNKCRCPPGFLGDYCE------IWQRPYICPKPCKQ-GVCSAARTC 174
                C   G C    +C C     G           +       + C   G CS    C
Sbjct: 490 EGQPVCSQRGECLC-GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCG-DC 547

Query: 175 ACYEGWFGRTCSQRSDSG 192
            C   W G  C+  + + 
Sbjct: 548 LCDSDWTGYYCNCTTRTD 565

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 66.3 bits (162), Expect = 5e-14
 Identities = 41/147 (27%), Positives = 55/147 (37%), Gaps = 40/147 (27%)

Query: 25  CLNGGKCVQKD-----TCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLR 79
           C NGG C+        +CEC  GF    C   +  E   +  +      C          
Sbjct: 8   CENGGICLPGLADGSFSCECPDGFTDPNCSSVV--EVASDEEEPTSAGPCTPN------- 58

Query: 80  CEFSKCIIPCLNGGRCKGVN----------KCRCPPGFLGDYCEIWQRPYISKCII-PCL 128
                   PC NGG C+              C+CP GF G +C+      I++C + PC 
Sbjct: 59  --------PCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQH----NINECEVEPCK 106

Query: 129 NGGRCK-GVN--KCRCPPGFLGDYCEI 152
           NGG C   V    C CP  F+G  C+ 
Sbjct: 107 NGGICTDLVANYSCECPGEFMGRNCQY 133

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 36/131 (27%), Positives = 47/131 (35%), Gaps = 29/131 (22%)

Query: 88  PCLNGGRCKGVN-----KCRCPPGFLGDYCEIWQRPYISKCII---------PCLNGGRC 133
           PC NGG C          C CP GF    C         +            PC NGG C
Sbjct: 7   PCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTC 66

Query: 134 KGVN----------KCRCPPGFLGDYCEIWQRPYICPKPCK-QGVCS---AARTCACYEG 179
           +              C+CP GF G +C+         +PCK  G+C+   A  +C C   
Sbjct: 67  EISEAYRGDTFIGYVCKCPRGFNGIHCQH-NINECEVEPCKNGGICTDLVANYSCECPGE 125

Query: 180 WFGRTCSQRSD 190
           + GR C  +  
Sbjct: 126 FMGRNCQYKGG 136

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 61.4 bits (148), Expect = 4e-11
 Identities = 27/127 (21%), Positives = 37/127 (29%), Gaps = 17/127 (13%)

Query: 31  CVQKDTCECQKGFYGLRCEFCI--CTEKCLNGGKCVQKD---TCECQKGFYGLRCEFSKC 85
              K TCEC+    G  C  C      +  + G  +         C      +       
Sbjct: 309 DNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDN 368

Query: 86  I-IPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRC-KGVNKCRCPP 143
             + C NGG C    +C CP  + G  CE        K    C   G C     +   P 
Sbjct: 369 ELLHCQNGGTCHNNVRCLCPAAYTGILCE--------KL--RCEEAGSCGSDSGQGAPPH 418

Query: 144 GFLGDYC 150
           G    + 
Sbjct: 419 GTHHHHH 425

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 50.6 bits (120), Expect = 1e-07
 Identities = 29/132 (21%), Positives = 37/132 (28%), Gaps = 18/132 (13%)

Query: 31  CVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKD----TCECQKGFYGLRCEFSKCI 86
            +  D     + FY +         KC         D    TCEC+    G  C   KC 
Sbjct: 273 EIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCG--KCK 330

Query: 87  -----IPCLNGGRCKGVN--KCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKC 139
                 P   G            C P                  ++ C NGG C    +C
Sbjct: 331 KNYQGRPWSPGSYLPIPKGAANACIPSISSIGTN-----VCDNELLHCQNGGTCHNNVRC 385

Query: 140 RCPPGFLGDYCE 151
            CP  + G  CE
Sbjct: 386 LCPAAYTGILCE 397

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 5/57 (8%)

Query: 25  CLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKD-TCECQKGFYGLRC 80
           C NGG C     C C   + G+ CE      +C   G C           G +    
Sbjct: 373 CQNGGTCHNNVRCLCPAAYTGILCEKL----RCEEAGSCGSDSGQGAPPHGTHHHHH 425

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* Length = 188

 Score = 59.2 bits (142), Expect = 5e-11
 Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 37  CECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCK 96
             C     G+             G   +       Q   +   C+ ++C   C NGG C 
Sbjct: 107 FPCLGXQDGVAAFEVDVIVMNSEGNTILXT----PQNAIFFKTCQQAECPGGCRNGGFCN 162

Query: 97  GVNKCRCPPGFLGDYCE 113
               C CP GF G +CE
Sbjct: 163 ERRICECPDGFHGPHCE 179

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* Length = 188

 Score = 53.4 bits (127), Expect = 6e-09
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 21  CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
                  G   +       Q   +   C+   C   C NGG C ++  CEC  GF+G  C
Sbjct: 123 VIVMNSEGNTILXT----PQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHC 178

Query: 81  EFSKC 85
           E +K 
Sbjct: 179 EGTKH 183

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* Length = 188

 Score = 51.1 bits (121), Expect = 3e-08
 Identities = 20/102 (19%), Positives = 28/102 (27%), Gaps = 10/102 (9%)

Query: 50  FCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLG 109
             +     +     V +    C     G+       I+    G                 
Sbjct: 88  VNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXT----PQNAIFF 143

Query: 110 DYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCE 151
             C        ++C   C NGG C     C CP GF G +CE
Sbjct: 144 KTC------QQAECPGGCRNGGFCNERRICECPDGFHGPHCE 179

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* Length = 188

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 14/47 (29%), Positives = 18/47 (38%)

Query: 11  MTILLFVSGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKC 57
           +         C   C NGG C ++  CEC  GF+G  CE        
Sbjct: 141 IFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEGTKHHHHH 187

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* Length = 188

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 19/137 (13%), Positives = 30/137 (21%), Gaps = 29/137 (21%)

Query: 52  ICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDY 111
             + + L+ G            G         +   PCL         +           
Sbjct: 72  FLSLRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDV-------- 123

Query: 112 CEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQ-GVCSA 170
                       I+    G                        +   CP  C+  G C+ 
Sbjct: 124 ------------IVMNSEGNTILXTP--------QNAIFFKTCQQAECPGGCRNGGFCNE 163

Query: 171 ARTCACYEGWFGRTCSQ 187
            R C C +G+ G  C  
Sbjct: 164 RRICECPDGFHGPHCEG 180

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A Length = 463

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 18  SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYG 77
           +  C+  C NG  C     C C  G+ G  C    C   C +GG CV+ + C C+KG+ G
Sbjct: 392 TSECSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLG 450

Query: 78  LRCE 81
            +CE
Sbjct: 451 PQCE 454

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A Length = 463

 Score = 55.8 bits (134), Expect = 3e-09
 Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 93  GRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEI 152
           G C    KC C PG+ GD+C        +KC   C +GG C   NKC C  G+LG  CE 
Sbjct: 402 GYCTPTGKCCCSPGWEGDFCRT------AKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQ 455

Query: 153 WQR 155
              
Sbjct: 456 VDH 458

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A Length = 463

 Score = 54.2 bits (130), Expect = 1e-08
 Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 53  CTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYC 112
           C+  C NG  C     C C  G+ G  C  +KC   C +GG C   NKC C  G+LG  C
Sbjct: 395 CSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 453

Query: 113 EIWQR 117
           E    
Sbjct: 454 EQVDH 458

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A Length = 463

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 91  NGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYC 150
           NG   K V+  R              +   S+C   C NG  C    KC C PG+ GD+C
Sbjct: 363 NGKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLCRNG-YCTPTGKCCCSPGWEGDFC 421

Query: 151 EIWQRPYICPKPCKQ-GVCSAARTCACYEGWFGRTCSQ 187
              +    C   C+  GVC     C C +G+ G  C Q
Sbjct: 422 RTAK----CEPACRHGGVCVRPNKCLCKKGYLGPQCEQ 455

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 24/127 (18%), Positives = 32/127 (25%), Gaps = 21/127 (16%)

Query: 25  CLNGGKC---VQKDTCECQKGFYGLRCEFCI--CTEK-CLNGGKCVQKD---TCECQKGF 75
           C+         ++   +  K             C    C N GKC       TC C +GF
Sbjct: 12  CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71

Query: 76  YGLRCE---FSKCII-PCLNGGRCK-GVN--KCRCPPGFLGDYCEIWQRPYISKCI-IPC 127
            G  CE      C +        C    N   C C  G+                   PC
Sbjct: 72  EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK----ACIPTGPYPC 127

Query: 128 LNGGRCK 134
                 +
Sbjct: 128 GKQTLER 134

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 23/110 (20%), Positives = 34/110 (30%), Gaps = 18/110 (16%)

Query: 57  CLNGGKC---VQKDTCECQKGFYGLRCEF--SKCII-PCLNGGRCK-GVN--KCRCPPGF 107
           C+         ++   +  K            +C   PC N G+CK G+    C C  GF
Sbjct: 12  CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71

Query: 108 LGDYCEIWQRPYISKC--IIPCLNGGRCK-GVN--KCRCPPGFLGDYCEI 152
            G  CE+    +  K   +        C    N   C C  G+       
Sbjct: 72  EGKNCEL----FTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK 117

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 21/114 (18%), Positives = 31/114 (27%), Gaps = 15/114 (13%)

Query: 88  PCLNGGRCKGV---NKCRCPPGFLGDYCEIWQRPYISKCII-PCLNGGRCK-GVN--KCR 140
            C+                                  +C   PC N G+CK G+    C 
Sbjct: 11  ECMEETCSYEEAREVFEDSDKTNEFWNKYKD----GDQCETSPCQNQGKCKDGLGEYTCT 66

Query: 141 CPPGFLGDYCEIWQRPYICPKPCK-QGVCS---AARTCACYEGWFGRTCSQRSD 190
           C  GF G  CE++ R             C     +  C+C  G+      +   
Sbjct: 67  CLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 120

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 22/93 (23%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 69  CECQKGFYGLRCEFSKC---IIPCLNGGRCK-GVN--KCRCPPGFLGDYCEIWQRPYISK 122
              +K     +           PCLNGG CK  +N  +C C  GF G  CE+     I  
Sbjct: 33  ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKN 92

Query: 123 CIIPCLNGGRCKGVN---KCRCPPGFLGDYCEI 152
                       G +    C C  G+     + 
Sbjct: 93  G---RCKQFCKTGADSKVLCSCTTGYRLAPDQK 122

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 22/115 (19%), Positives = 30/115 (26%), Gaps = 15/115 (13%)

Query: 37  CECQKGFYGLRCEFCICTEK---CLNGGKCVQKD---TCECQKGFYGLRCEFSK---CII 87
              +K     +        +   CLNGG C        C CQ GF G  CE         
Sbjct: 33  ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKN 92

Query: 88  PCLNGGRCKGVN---KCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKC 139
                    G +    C C  G+     +   +P +     PC            
Sbjct: 93  GRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPF---PCGRVSVSHSPTTL 144

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 21/89 (23%), Positives = 25/89 (28%), Gaps = 12/89 (13%)

Query: 25  CLNGGKCVQKD---TCECQKGFYGLRCEFCI--CTEKCLNGGKCVQKD----TCECQKGF 75
           CLNGG C        C CQ GF G  CE       +       C         C C  G+
Sbjct: 56  CLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGY 115

Query: 76  YGLRCEFS--KCI-IPCLNGGRCKGVNKC 101
                + S    +  PC            
Sbjct: 116 RLAPDQKSCKPAVPFPCGRVSVSHSPTTL 144

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 11/94 (11%)

Query: 101 CRCPPGFLGDYCEIWQRPYISKCII-PCLNGGRCK-GVN--KCRCPPGFLGDYCEIWQRP 156
                        +       +C   PCLNGG CK  +N  +C C  GF G  CE+    
Sbjct: 33  ENTEKTNEFWKQYV----DGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATC 88

Query: 157 YICPKPCKQGVCS---AARTCACYEGWFGRTCSQ 187
            I    CKQ   +   +   C+C  G+      +
Sbjct: 89  NIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQK 122

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 26/130 (20%), Positives = 36/130 (27%), Gaps = 20/130 (15%)

Query: 25  CLNGGKCVQKD---TCECQKGFYGLRCEFCI---CTEK-CLNGGKCVQKD---TCECQKG 74
           C N GKC       TC C +GF G  CE      C+         C ++     C C +G
Sbjct: 50  CQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARG 109

Query: 75  FYGLRCEFS--KCI-IPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYISKCII-PC 127
           +       +       PC      +    V +     G   D              + P 
Sbjct: 110 YTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKP---YDAADLDPT 166

Query: 128 LNGGRCKGVN 137
            N       N
Sbjct: 167 ENPFDLLDFN 176

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 26/140 (18%), Positives = 40/140 (28%), Gaps = 18/140 (12%)

Query: 63  CVQKDTCECQKGFYGLRCEF--SKCII-PCLNGGRCK-GVN--KCRCPPGFLGDYCEIWQ 116
             ++   +  K            +C   PC N G+CK G+    C C  GF G  CE+  
Sbjct: 21  EAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL-- 78

Query: 117 RPYISKCII-PCLNGGRCKGVN---KCRCPPGFLGDYCEIWQRPYICPKPCKQGVC---- 168
                 C +        C        C C  G+          P   P PC +       
Sbjct: 79  -FTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP-TGPYPCGKQTLERRK 136

Query: 169 SAARTCACYEGWFGRTCSQR 188
            +        G    + + +
Sbjct: 137 RSVAQATSSSGEAPDSITWK 156

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 22/110 (20%)

Query: 61  GKCVQKDTCE----CQKGFYGLRCEF--SKCII-PCLNGGRCK-GVN--KCRCPPGFLGD 110
            +C  ++  E     ++            +C   PC NGG CK  +    C C P F G 
Sbjct: 20  EQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 79

Query: 111 YCEIWQRPYISKCII-PCLNGGRCKGVN-------KCRCPPGFLGDYCEI 152
            CE     +    +I    NGG  +  +        CRC  G+      +
Sbjct: 80  NCET----HKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGV 125

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 28/183 (15%), Positives = 40/183 (21%), Gaps = 35/183 (19%)

Query: 37  CECQKGFYGLRCEFCICTEKCLNGGKCVQK-DTCECQKGFYGLRCEFSKCIIPCLNGGRC 95
             CQ    G  CE C                D   C+          +  I         
Sbjct: 346 DNCQHNTMGRNCEQCKP---FYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSV 402

Query: 96  KGVN-KCRCPPGFLGDYCEI-------WQRPYISKCIIP-------CLNGGRCKGVN-KC 139
             +  +CRC     G+ C++               C             G  C      C
Sbjct: 403 GLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYC 462

Query: 140 RCPPGFLGDYCEI----WQRPYICPKPCKQGVCSAART-----------CACYEGWFGRT 184
            C     G  C+               C+   C                C+C     GR 
Sbjct: 463 YCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQ 522

Query: 185 CSQ 187
           C++
Sbjct: 523 CNE 525

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 11/65 (16%)

Query: 94  RCKGVNKCRCPPGFLGDYCEIWQRPYISKCII-PCLNGGRCKGVNK-----CRCPPGFLG 147
           R   V  C C  G    +        +  C    C NGG C+         C+CP GF G
Sbjct: 27  RSNRVEYCWCNSGRAQCHSV-----PVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAG 81

Query: 148 DYCEI 152
             CEI
Sbjct: 82  KSCEI 86

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 21  CTEKCLNGGKCVQKD---TCECQKGFYGLRCEFCICTEKCL-----NGGKCVQKD---TC 69
           C   C   G C+      +C+C+ G+ G  C+  +    C          C+++     C
Sbjct: 18  CASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRC 77

Query: 70  ECQKGFYGLRCEFSKCI----IPCLNGGRCK 96
            C  G+         C      PC    +  
Sbjct: 78  SCAPGYKLGDDLLQ-CHPAVKFPCGRPWKRM 107

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 18/96 (18%)

Query: 30  KCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKD---TCECQKGFYGLRCEFSKCI 86
           K V  D C               C   C   G C+      +C+C+ G+ G  C+     
Sbjct: 2   KHVDGDQCLVLP-------LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSF 54

Query: 87  I-----PCLNGGRCKGVN---KCRCPPGFLGDYCEI 114
           +            C       +C C PG+      +
Sbjct: 55  LNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLL 90

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 37.0 bits (86), Expect = 9e-04
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 14/97 (14%)

Query: 62  KCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRP 118
           K V  D C               C   C   G C    G   C C  G+ G +C+  +  
Sbjct: 2   KHVDGDQCLVLP-------LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQR-EVS 53

Query: 119 YISKCIIPCLNGGRCKGVN---KCRCPPGFLGDYCEI 152
           +++  +        C       +C C PG+      +
Sbjct: 54  FLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLL 90

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 88  PCLNGGRCK-GVN--KCRCPPGFLGDYCEI 114
           PCLNGG CK  +N  +C CP GF G  CE+
Sbjct: 10  PCLNGGSCKDDINSYECWCPFGFEGKNCEL 39

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 126 PCLNGGRCK-GVN--KCRCPPGFLGDYCEI 152
           PCLNGG CK  +N  +C CP GF G  CE+
Sbjct: 10  PCLNGGSCKDDINSYECWCPFGFEGKNCEL 39

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A Length = 217

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 33/139 (23%), Positives = 40/139 (28%), Gaps = 25/139 (17%)

Query: 21  CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
               C   G       C C  G+ G  CE       C   G+  Q+    C+K       
Sbjct: 94  DRSLCHGKGFLECG-ICRCDTGYIGKNCE-------CQTQGRSSQELEGSCRKD------ 139

Query: 81  EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGV---- 136
                 I C   G C    +C C    +       Q            NG  C G     
Sbjct: 140 ---NNSIICSGLGDCVC-GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGL 195

Query: 137 ---NKCRCPPGFLGDYCEI 152
               KCRC PGF G  C+ 
Sbjct: 196 CFCGKCRCHPGFEGSACQH 214

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 10/65 (15%)

Query: 88  PCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYISK----CIIPCLNGGRCKGVNKCR 140
           PCL+ G C+       C C PG+ G  CE+ +     +    C   CL G        C 
Sbjct: 12  PCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYT---CS 68

Query: 141 CPPGF 145
           C  G+
Sbjct: 69  CAQGY 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.95
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.84
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.83
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.83
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.76
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	99.75
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.62
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.58
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	99.57
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	99.54
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.54
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.53
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.5
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	99.48
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.48
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.46
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	99.4
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.39
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.35
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.27
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.17
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.15
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	99.13
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.05
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.04
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	99.01
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	98.96
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	98.84
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	98.8
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.79
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.76
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	98.68
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	98.6
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.5
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	98.49
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	98.44
1aut_L	114	Activated protein C; serine proteinase, plasma cal	98.31
1aut_L	114	Activated protein C; serine proteinase, plasma cal	98.21
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	98.2
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	98.19
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	98.15
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.13
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.12
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	98.09
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	98.09
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	98.08
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	98.07
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	98.05
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.0
2vh0_B	134	Activated factor XA light chain; serine protease,	97.96
2vh0_B	134	Activated factor XA light chain; serine protease,	97.93
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.87
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	97.82
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	97.81
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	97.8
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	97.78
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	97.77
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	97.73
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	97.73
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	97.72
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	97.71
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	97.66
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	97.6
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	97.55
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	97.55
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	97.53
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	97.43
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	97.43
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	97.39
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	97.38
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	97.38
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	97.37
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	97.32
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	97.26
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	97.18
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	97.08
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.05
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	96.98
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	96.93
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	96.82
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	96.73
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	96.68
2p26_A	280	Integrin beta-2; hybrid domain, PSI domain, I-EGF	96.66
2e26_A	725	Reelin, reeler protein; signaling protein; HET: NA	96.65
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.57
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.55
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	96.47
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	96.37
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	96.31
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	96.17
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	96.08
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	96.06
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	95.94
3v65_B	386	Low-density lipoprotein receptor-related protein;	95.86
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	95.6
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.59
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	95.4
2p26_A	280	Integrin beta-2; hybrid domain, PSI domain, I-EGF	95.4
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	95.33
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	95.16
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	95.12
3v65_B	386	Low-density lipoprotein receptor-related protein;	94.97
2e26_A	725	Reelin, reeler protein; signaling protein; HET: NA	94.93
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	94.18
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	93.9
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	93.71
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	93.64
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	93.46
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	92.76
2ddu_A	387	Reelin; beta-jelly-roll, signaling protein; 2.05A	92.7
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	92.3
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	92.02
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	91.29
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	91.28
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	91.1
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	91.02
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	90.16
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	90.05
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	89.88
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	88.85
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	88.59
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	86.16
1ob1_C	99	Major merozoite surface protein; immune system, im	84.48
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	83.94
3t3p_B	472	Integrin beta-3; integrin, cell adhesion, blood cl	83.69
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	81.87
3g5c_A	510	ADAM 22; alpha/beta fold, cross-linked domain, cel	80.37

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.95  E-value=2.9e-28  Score=206.93  Aligned_cols=163  Identities=45%  Similarity=1.161  Sum_probs=89.7

Q ss_pred             CCCCcCCCCCCEeecCCceeeCCCCcCCCCCcCCCCCCCCCCCeecCCCceeeCCCCccCCCCcCCCCCCCCCCceecCC
Q psy9568          19 GICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGV   98 (248)
Q Consensus        19 ~~C~~~C~~~g~C~~~~~C~C~~G~~G~~C~~~~c~~~C~~~g~C~~~~~C~C~~g~~G~~C~~~~C~~~C~~~g~C~~~   98 (248)
                      ..|+++|.++|.|++.+.|.|++||+|..|+...|..+|.++|+|+..+.|.|++||.|..|+.+.|..+|.++|+|...
T Consensus       149 ~~C~~~C~~~G~C~~~~~C~C~~G~~G~~C~~~~C~~~C~~~G~C~~~~~C~C~~G~~G~~C~~~~C~~~C~~~G~C~~~  228 (324)
T 2ygq_A          149 AECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYP  228 (324)
T ss_dssp             CCCSSCCCSSCEECTTSCEECCTTEESSSSCEESSSSCCCTTCEECSSCCEECCTTCBTTTTCBCCCSSCCCSSCCBSCS
T ss_pred             CCCCCCCCCCCEECCCCeEECCCCCcCCCCCCCCCCCCCCCCCEEcCCCEEeCCCCccCCCcccCcCCCCCCCCCeeCCC
Confidence            57888999999999889999999999999998788889999999999999999999999999988899999999999988


Q ss_pred             CceeCCCCcccCCCCccCCCCCCCCCCCCCCCceeeCCCeeeCCCCCCCCCCCcCCCCCCCCCCCCC-CccCCCCeeecC
Q psy9568          99 NKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQ-GVCSAARTCACY  177 (248)
Q Consensus        99 ~~C~C~~g~~g~~C~~~~~~~~~~c~~~C~~~g~C~~~~~C~C~~g~~g~~C~~~~~~~~c~~~C~~-g~C~~~~~C~C~  177 (248)
                      +.|.|.+||+|..|+..      .|..+|.++|.|...++|.|.+||+|..|+.    +.|..+|.+ |+|...++|.|+
T Consensus       229 ~~C~C~~G~~G~~C~~~------~C~~~C~~~g~C~~~~~C~C~~G~~G~~C~~----~~C~~~C~~~g~C~~~~~C~C~  298 (324)
T 2ygq_A          229 GKCICPPGLEGEQCEIS------KCPQPCRNGGKCIGKSKCKCSKGYQGDLCSK----PVCEPGCGAHGTCHEPNKCQCQ  298 (324)
T ss_dssp             SCBCCCTTCCTTTTC-----------------------------------------------------------------
T ss_pred             CeeeCCCCccCCCCCcC------cCCCcCCCCCEECCCCEEECCCCCcCCCCcC----CCCCCCCCCCCEECCCCEeECC
Confidence            99999999999999852      3446899999999888999999999999985    456678865 999988999999


Q ss_pred             CCCccCCCCCCCCC
Q psy9568         178 EGWFGRTCSQRSDS  191 (248)
Q Consensus       178 ~g~~G~~C~~~~~~  191 (248)
                      +||+|..|+.....
T Consensus       299 ~G~~G~~C~~~~~~  312 (324)
T 2ygq_A          299 EGWHGRHCNKRYEA  312 (324)
T ss_dssp             --------------
T ss_pred             CCCcCCCCCCCCcc
Confidence            99999999876544

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.84  E-value=1.1e-21  Score=166.51  Aligned_cols=128  Identities=43%  Similarity=1.076  Sum_probs=58.1

Q ss_pred             CCCcCCCCCCEeecCCceeeCCCCcCCCCCcCCCCCCCCCCCeecCCCceeeCCCCccCCCCcCCCCCCCCCCceecCCC
Q psy9568          20 ICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVN   99 (248)
Q Consensus        20 ~C~~~C~~~g~C~~~~~C~C~~G~~G~~C~~~~c~~~C~~~g~C~~~~~C~C~~g~~G~~C~~~~C~~~C~~~g~C~~~~   99 (248)
                      .|..+|.++|.|+.++.|.|++||+|..|+...|..+|.++|+|+..++|.|++||.|..|+++.|..+|.++|.|.+.+
T Consensus       182 ~C~~~C~~~G~C~~~~~C~C~~G~~G~~C~~~~C~~~C~~~G~C~~~~~C~C~~G~~G~~C~~~~C~~~C~~~g~C~~~~  261 (324)
T 2ygq_A          182 LCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKS  261 (324)
T ss_dssp             SSSSCCCTTCEECSSCCEECCTTCBTTTTCBCCCSSCCCSSCCBSCSSCBCCCTTCCTTTTC------------------
T ss_pred             CCCCCCCCCCEEcCCCEEeCCCCccCCCcccCcCCCCCCCCCeeCCCCeeeCCCCccCCCCCcCcCCCcCCCCCEECCCC
Confidence            56678999999998899999999999999988898999999999998999999999999999888988999999999889


Q ss_pred             ceeCCCCcccCCCCccCCCCCCCCCCCCCCCceeeCCCeeeCCCCCCCCCCCcC
Q psy9568         100 KCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIW  153 (248)
Q Consensus       100 ~C~C~~g~~g~~C~~~~~~~~~~c~~~C~~~g~C~~~~~C~C~~g~~g~~C~~~  153 (248)
                      +|.|.+||+|+.|+..      .|..+|.++|.|...++|.|.+||+|.+|+..
T Consensus       262 ~C~C~~G~~G~~C~~~------~C~~~C~~~g~C~~~~~C~C~~G~~G~~C~~~  309 (324)
T 2ygq_A          262 KCKCSKGYQGDLCSKP------VCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKR  309 (324)
T ss_dssp             ------------------------------------------------------
T ss_pred             EEECCCCCcCCCCcCC------CCCCCCCCCCEECCCCEeECCCCCcCCCCCCC
Confidence            9999999999999852      34457889999997799999999999999863

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.83  E-value=2.1e-21  Score=150.22  Aligned_cols=143  Identities=29%  Similarity=0.753  Sum_probs=113.8

Q ss_pred             CceeeCCCCcCCCCCcCCCC--CCCCCCCeecCCCceeeCCCCccCCCCcCCCCCCCC-CCceecCCCceeCCCCcccCC
Q psy9568          35 DTCECQKGFYGLRCEFCICT--EKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCL-NGGRCKGVNKCRCPPGFLGDY  111 (248)
Q Consensus        35 ~~C~C~~G~~G~~C~~~~c~--~~C~~~g~C~~~~~C~C~~g~~G~~C~~~~C~~~C~-~~g~C~~~~~C~C~~g~~g~~  111 (248)
                      +.|.|++||+|..|+. .|.  ..|.++++|...++|.|.+||+|..|+.+.|...|. .+|.|+..+.|.|.+||+|..
T Consensus        17 ~~c~C~~g~~G~~C~~-~C~~~~~c~~~g~C~~~g~C~C~~G~~G~~C~~~~C~~~C~~~~g~C~~~~~C~C~~G~~G~~   95 (169)
T 2vj2_A           17 SAVTCDDYYYGFGCNK-FCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLY   95 (169)
T ss_dssp             ----CCTTEETTTTCE-ECCCEEETTEEEEECSSCCEEECTTEESTTSCEECCCTTCCTTTEECSSTTCCEECTTEESSS
T ss_pred             eeeeCCCcCcCCCccc-ccCCCCCcCCCCEeCCCCeeECCCCCcCCCCCCCCCCCCCCCCCcccCCCCeeECCCCCCCCC
Confidence            6899999999999984 344  358888999888999999999999999888887786 678898889999999999999


Q ss_pred             CCccCCCCCCCCCCCCCCCceeeCCCeeeCCCCCCCCCCCcCCCCCCC--CCCCCC-CccC----CCCeeecCCCCccCC
Q psy9568         112 CEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYIC--PKPCKQ-GVCS----AARTCACYEGWFGRT  184 (248)
Q Consensus       112 C~~~~~~~~~~c~~~C~~~g~C~~~~~C~C~~g~~g~~C~~~~~~~~c--~~~C~~-g~C~----~~~~C~C~~g~~G~~  184 (248)
                      |+.-..      ...|.+ |+|+..++|.|.+||+|..|+..  +++|  ..+|.+ |+|+    ++|+|.|++||+|..
T Consensus        96 C~~C~~------~~~C~~-g~C~~~~~C~C~~G~~G~~C~~~--~~~C~~~~~C~~~g~C~~~~~~~~~C~C~~G~~G~~  166 (169)
T 2vj2_A           96 CDKCIP------HPGCVH-GICNEPWQCLCETNWGGQLCDKD--LNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPN  166 (169)
T ss_dssp             SCEECC------CTTCSS-EECSSTTCCEECTTEETTTTCEE--SCHHHHTCCCCTTCEEEECSTTCEEEECCTTCCSTT
T ss_pred             cccCCC------CCCCCC-CCcCCCCEEeCCCCCCCCcccCC--CCCCCCCCCCCCCCEEcCCCCCCcEeECCCCCcCcC
Confidence            974211      123665 58988899999999999999853  3445  378977 8887    458999999999999


Q ss_pred             CCC
Q psy9568         185 CSQ  187 (248)
Q Consensus       185 C~~  187 (248)
                      |++
T Consensus       167 Ce~  169 (169)
T 2vj2_A          167 CEI  169 (169)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            963

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.83  E-value=3.7e-20  Score=170.13  Aligned_cols=176  Identities=27%  Similarity=0.650  Sum_probs=130.3

Q ss_pred             ceeEEEEEeEE-EeeeccCCCC----c-CCCCCCEeec------CCceeeCCCCcCCCCCcC----------CCC-----
Q psy9568           2 RLNVAVVSLMT-ILLFVSGICT----E-KCLNGGKCVQ------KDTCECQKGFYGLRCEFC----------ICT-----   54 (248)
Q Consensus         2 ~~~~~~~~~~~-~~~~~~~~C~----~-~C~~~g~C~~------~~~C~C~~G~~G~~C~~~----------~c~-----   54 (248)
                      +|.|+++.|.. +.+.....|.    . +|.+++.|.+      .+.|.|++||+|..|+..          .|.     
T Consensus       413 ~~~i~p~G~~e~l~v~v~~~C~C~C~~~pc~n~~~C~~g~G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~  492 (690)
T 3fcs_B          413 SFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQ  492 (690)
T ss_dssp             EEEEEETTCSCCEEEEEEECCSCGGGTTCCTTCTTTTTTSEEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSS
T ss_pred             EEEEeecCCccceeeecccccccCCcCCCCCCCCcccCCCCeEeCCceEeCCCccCCceeeccCccCCccCCcCCCCCCC
Confidence            46677777632 2333333333    2 4556666652      256999999999999743          254     


Q ss_pred             CCCCCCCeecCCCceeeC----CCCccCCCC--cCCCC----CCCCCCceecCCCceeCCCCcccCCCC--ccCCCCCCC
Q psy9568          55 EKCLNGGKCVQKDTCECQ----KGFYGLRCE--FSKCI----IPCLNGGRCKGVNKCRCPPGFLGDYCE--IWQRPYISK  122 (248)
Q Consensus        55 ~~C~~~g~C~~~~~C~C~----~g~~G~~C~--~~~C~----~~C~~~g~C~~~~~C~C~~g~~g~~C~--~~~~~~~~~  122 (248)
                      .+|.++|+|+. ++|.|.    +||.|..|+  .+.|.    .+|.++|.|.. +.|.|.+||+|..|+  .....+...
T Consensus       493 ~~Cs~~G~C~~-g~C~C~~~~~~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~-g~C~C~~Gy~G~~CeC~~~~~~C~~~  570 (690)
T 3fcs_B          493 PVCSQRGECLC-GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC-GDCLCDSDWTGYYCNCTTRTDTCMSS  570 (690)
T ss_dssp             CGGGGSEEECS-SSEEECCCSSCCCBSTTSCBCSSCCCBSSSSBGGGSEEEET-TEEEECTTEESSSSCEECCCTTTBCT
T ss_pred             CCCCCCCEEEC-CeeEeecCCCCCeeCCCcCcccCcCcCCCCCCCCCCCEecC-CeeECcCCCcCCCCccCCCCCcccCC
Confidence            24999999996 899999    999999997  45676    36999999986 999999999999998  222222211


Q ss_pred             CCCCCCCCceeeCCCeeeC-CCCCCCCCCCcCCCCCCCCCCCCC-CccCCCCeeecCCCCccCCCCCC
Q psy9568         123 CIIPCLNGGRCKGVNKCRC-PPGFLGDYCEIWQRPYICPKPCKQ-GVCSAARTCACYEGWFGRTCSQR  188 (248)
Q Consensus       123 c~~~C~~~g~C~~~~~C~C-~~g~~g~~C~~~~~~~~c~~~C~~-g~C~~~~~C~C~~g~~G~~C~~~  188 (248)
                      -..+|.++|.|.. +.|.| .+||+|..|+..   ..|+.+|.+ |.|+     .|.++|+|..|+..
T Consensus       571 ~g~~C~~~G~C~~-g~C~C~~~Gy~G~~Ce~C---~~C~~~C~~~g~Cv-----~C~~g~tG~~C~~~  629 (690)
T 3fcs_B          571 NGLLCSGRGKCEC-GSCVCIQPGSYGDTCEKC---PTCPDACTFKKECV-----ECKKFDRGALHDEN  629 (690)
T ss_dssp             TSSBTSSSCEEET-TEEECCSTTCBSTTSCBC---TTSCCTTTSCCGGG-----TTTTTCCSSSSSSS
T ss_pred             CCCCCCCCCEEeC-CEEECCCCCccCCCcCcC---CCCCCCCCCCCCcc-----cCCCCCccCCCCcc
Confidence            1147999999986 79999 999999999862   346788976 8887     39999999977543

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.76  E-value=5.1e-19  Score=136.73  Aligned_cols=126  Identities=32%  Similarity=0.752  Sum_probs=102.3

Q ss_pred             CCCCCCEeecCCceeeCCCCcCCCCCcCCCCCCCC-CCCeecCCCceeeCCCCccCCCCcCCCCCCCCCCceecCCCcee
Q psy9568          24 KCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCL-NGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCR  102 (248)
Q Consensus        24 ~C~~~g~C~~~~~C~C~~G~~G~~C~~~~c~~~C~-~~g~C~~~~~C~C~~g~~G~~C~~~~C~~~C~~~g~C~~~~~C~  102 (248)
                      .|.++++|+.++.|.|++||+|..|+...|...|. .+|.|++.++|.|++||.|..|+.-.....|.+ |+|++.++|.
T Consensus        39 ~c~~~g~C~~~g~C~C~~G~~G~~C~~~~C~~~C~~~~g~C~~~~~C~C~~G~~G~~C~~C~~~~~C~~-g~C~~~~~C~  117 (169)
T 2vj2_A           39 DFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCVH-GICNEPWQCL  117 (169)
T ss_dssp             ETTEEEEECSSCCEEECTTEESTTSCEECCCTTCCTTTEECSSTTCCEECTTEESSSSCEECCCTTCSS-EECSSTTCCE
T ss_pred             CcCCCCEeCCCCeeECCCCCcCCCCCCCCCCCCCCCCCcccCCCCeeECCCCCCCCCcccCCCCCCCCC-CCcCCCCEEe
Confidence            46678899878999999999999999877888887 678999889999999999999974222233775 4999889999


Q ss_pred             CCCCcccCCCCccCCCCCCCCCCCCCCCceeeC----CCeeeCCCCCCCCCCCc
Q psy9568         103 CPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKG----VNKCRCPPGFLGDYCEI  152 (248)
Q Consensus       103 C~~g~~g~~C~~~~~~~~~~c~~~C~~~g~C~~----~~~C~C~~g~~g~~C~~  152 (248)
                      |.+||+|..|+...+.+..  ..+|.++|+|+.    .++|.|++||+|.+|++
T Consensus       118 C~~G~~G~~C~~~~~~C~~--~~~C~~~g~C~~~~~~~~~C~C~~G~~G~~Ce~  169 (169)
T 2vj2_A          118 CETNWGGQLCDKDLNYCGT--HQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI  169 (169)
T ss_dssp             ECTTEETTTTCEESCHHHH--TCCCCTTCEEEECSTTCEEEECCTTCCSTTSCC
T ss_pred             CCCCCCCCcccCCCCCCCC--CCCCCCCCEEcCCCCCCcEeECCCCCcCcCcCC
Confidence            9999999999854432211  158999999984    37999999999999873

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=99.75  E-value=1.3e-18  Score=159.48  Aligned_cols=153  Identities=33%  Similarity=0.752  Sum_probs=115.9

Q ss_pred             CCCCCCEeecCCceeeCCCCcCCCCCcC-----------CCC-----CCCCCCCeecCCCceeeC------CCCccCCCC
Q psy9568          24 KCLNGGKCVQKDTCECQKGFYGLRCEFC-----------ICT-----EKCLNGGKCVQKDTCECQ------KGFYGLRCE   81 (248)
Q Consensus        24 ~C~~~g~C~~~~~C~C~~G~~G~~C~~~-----------~c~-----~~C~~~g~C~~~~~C~C~------~g~~G~~C~   81 (248)
                      .|+++|.|.. +.|.|++||+|..|+..           .|.     .+|.++|+|+. ++|.|.      +||+|..|+
T Consensus       436 ~Cs~~G~C~~-g~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~-G~C~C~~~~~~~~G~~G~~Ce  513 (687)
T 3k6s_B          436 LCHGKGFLEC-GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC-GQCLCHTSDVPGKLIYGQYCE  513 (687)
T ss_dssp             TGGGSEEESS-SSEEECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEET-TEEEECCCCSTTCCEESTTSC
T ss_pred             CCCCCCEEeC-CEeEcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEeC-CEEEcCCCCCCCCCccccccc
Confidence            5777888885 89999999999999821           253     24899999995 899999      999999998


Q ss_pred             --cCCCC----CCCCC--CceecCCCceeCCCCcccCCCCcc--CCCCCCCCCCCCCCCceeeCCCeeeCCCCCCCCCCC
Q psy9568          82 --FSKCI----IPCLN--GGRCKGVNKCRCPPGFLGDYCEIW--QRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCE  151 (248)
Q Consensus        82 --~~~C~----~~C~~--~g~C~~~~~C~C~~g~~g~~C~~~--~~~~~~~c~~~C~~~g~C~~~~~C~C~~g~~g~~C~  151 (248)
                        ...|.    .+|.+  +|.|.. ++|.|.+||+|..|+..  ...+...-..+|.++|.|.. ++|.|.+||+|..|+
T Consensus       514 ~~~~~C~~~~~~~C~~~~~G~C~~-g~C~C~~G~~G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~-g~C~C~~Gy~G~~Ce  591 (687)
T 3k6s_B          514 CDTINCERYNGQVCGGPGRGLCFC-GKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC-NVCECHSGYQLPLCQ  591 (687)
T ss_dssp             EESSCSCEETTEETSHHHHEEEET-TEEEECTTCCSTTSCSCCSSCTTBCTTCSBTSSSCCBCS-SCBCCSTTCCTTTTC
T ss_pred             cccccccCCCCcCcCCCCCCeEEC-CEEEcCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcCCC-CEEECCCCCcCCCCC
Confidence              55676    35888  899984 79999999999999832  12221111137999999987 899999999999998


Q ss_pred             cCCCCCCCCCCCCC-CccCCCCeeecCCCCcc---CCCCCC
Q psy9568         152 IWQRPYICPKPCKQ-GVCSAARTCACYEGWFG---RTCSQR  188 (248)
Q Consensus       152 ~~~~~~~c~~~C~~-g~C~~~~~C~C~~g~~G---~~C~~~  188 (248)
                      ..   ..|+.+|.+ +.|+     .|...++|   ..|+..
T Consensus       592 ~c---~~C~~~C~~~g~Cv-----~C~~~~~G~~~~~C~~~  624 (687)
T 3k6s_B          592 EC---PGCPSPCGKYISCA-----ECLKFEKGPFGKNCSAA  624 (687)
T ss_dssp             CC---TTSCCCCTTTHHHH-----TTTTSCSCCCSSCSSSS
T ss_pred             CC---CCCCcccCCCCCCC-----cccCCCCCCCCcccccc
Confidence            62   357788877 7776     35444555   445433

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.62  E-value=8.5e-16  Score=114.23  Aligned_cols=104  Identities=35%  Similarity=0.792  Sum_probs=68.7

Q ss_pred             CCCCCCceec---CCCceeCCCCcccCCCCccCCCCCCCCCCCCCCCceee---CCCeeeCCCCCCCCCCCcCCCCCCC-
Q psy9568          87 IPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYIC-  159 (248)
Q Consensus        87 ~~C~~~g~C~---~~~~C~C~~g~~g~~C~~~~~~~~~~c~~~C~~~g~C~---~~~~C~C~~g~~g~~C~~~~~~~~c-  159 (248)
                      .+|.++|+|+   +.|.|.|++||+|..|+.....+..   .+|.+++.|+   +.|+|.|++||+|..|+..+  +.| 
T Consensus        13 ~~C~~~g~C~~~~g~~~C~C~~Gy~G~~C~~~~~~C~~---~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~--~~C~   87 (135)
T 2vj3_A           13 NPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVS---NPCQNDATCLDQIGEFQCICMPGYEGVHCEVNT--DECA   87 (135)
T ss_dssp             CSSSTTCEEEECSSSEEEECCTTEESTTSCEECCTTTT---CCCCSSCEEEECSSCEEEECCTTEESSSSCEEC--CTTT
T ss_pred             CCCCCCCEeECCCCCEEEECCCCCcCCcccccCccCCC---CCCCCCCEEeCCCCCceeeCCCCCcCCcceecC--Cccc
Confidence            4577777776   4467778888887777654433322   4677777776   34678888888888876532  344 


Q ss_pred             CCCCCC-CccC---CCCeeecCCCCccCCCCCCCCCCCCC
Q psy9568         160 PKPCKQ-GVCS---AARTCACYEGWFGRTCSQRSDSGEDK  195 (248)
Q Consensus       160 ~~~C~~-g~C~---~~~~C~C~~g~~G~~C~~~~~~~~~~  195 (248)
                      ..+|.+ |+|+   ++|+|.|++||+|..|+.+++++...
T Consensus        88 ~~~C~~~g~C~~~~g~~~C~C~~G~~G~~C~~~i~~C~~~  127 (135)
T 2vj3_A           88 SSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILDA  127 (135)
T ss_dssp             TCCSTTTCEEEECSSCEEEECCTTEESSSSCEECC-----
T ss_pred             CCCcCCCCEeECCCCCeEEECCCCCcCCccCccCccccCC
Confidence            567765 7776   57788888888888888777777654

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.58  E-value=4.2e-15  Score=136.71  Aligned_cols=129  Identities=29%  Similarity=0.716  Sum_probs=99.2

Q ss_pred             CCCCCCeecC------CCceeeCCCCccCCCCcC----------CCC-----CCCCCCceecCCCceeCC----CCcccC
Q psy9568          56 KCLNGGKCVQ------KDTCECQKGFYGLRCEFS----------KCI-----IPCLNGGRCKGVNKCRCP----PGFLGD  110 (248)
Q Consensus        56 ~C~~~g~C~~------~~~C~C~~g~~G~~C~~~----------~C~-----~~C~~~g~C~~~~~C~C~----~g~~g~  110 (248)
                      +|.+++.|.+      .+.|.|.+||.|..|+.+          .|.     .+|.++|+|. .+.|.|.    +||+|.
T Consensus       441 pc~n~~~C~~g~G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~-~g~C~C~~~~~~Gy~G~  519 (690)
T 3fcs_B          441 AEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECL-CGQCVCHSSDFGKITGK  519 (690)
T ss_dssp             CCTTCTTTTTTSEEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEEC-SSSEEECCCSSCCCBST
T ss_pred             CCCCCCcccCCCCeEeCCceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEE-CCeeEeecCCCCCeeCC
Confidence            4555555542      467999999999999753          375     2499999998 4899999    999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCceeeCCCeeeCCCCCCCCCCCcCCCCCCCC----CCCCC-CccCCCCeeec-CCCCccCC
Q psy9568         111 YCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICP----KPCKQ-GVCSAARTCAC-YEGWFGRT  184 (248)
Q Consensus       111 ~C~~~~~~~~~~c~~~C~~~g~C~~~~~C~C~~g~~g~~C~~~~~~~~c~----~~C~~-g~C~~~~~C~C-~~g~~G~~  184 (248)
                      .|+.....+......+|.++|.|.. +.|.|.+||+|..|+...+...|.    .+|.+ |.|. .++|.| .+||+|..
T Consensus       520 ~Ce~~~~~C~~~~~~~C~~~G~C~~-g~C~C~~Gy~G~~CeC~~~~~~C~~~~g~~C~~~G~C~-~g~C~C~~~Gy~G~~  597 (690)
T 3fcs_B          520 YCECDDFSCVRYKGEMCSGHGQCSC-GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCE-CGSCVCIQPGSYGDT  597 (690)
T ss_dssp             TSCBCSSCCCBSSSSBGGGSEEEET-TEEEECTTEESSSSCEECCCTTTBCTTSSBTSSSCEEE-TTEEECCSTTCBSTT
T ss_pred             CcCcccCcCcCCCCCCCCCCCEecC-CeeECcCCCcCCCCccCCCCCcccCCCCCCCCCCCEEe-CCEEECCCCCccCCC
Confidence            9986444333221247999999987 899999999999998333345663    56876 8997 479999 99999999


Q ss_pred             CCC
Q psy9568         185 CSQ  187 (248)
Q Consensus       185 C~~  187 (248)
                      |+.
T Consensus       598 Ce~  600 (690)
T 3fcs_B          598 CEK  600 (690)
T ss_dssp             SCB
T ss_pred             cCc
Confidence            986

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=99.57  E-value=6.2e-15  Score=129.15  Aligned_cols=144  Identities=29%  Similarity=0.699  Sum_probs=99.0

Q ss_pred             ceeeCCCCcCCCCCcCCCCCCCCCCCeecC-CCceeeCCCCccCCCCcC------------CCC--CCCCCCceec-CCC
Q psy9568          36 TCECQKGFYGLRCEFCICTEKCLNGGKCVQ-KDTCECQKGFYGLRCEFS------------KCI--IPCLNGGRCK-GVN   99 (248)
Q Consensus        36 ~C~C~~G~~G~~C~~~~c~~~C~~~g~C~~-~~~C~C~~g~~G~~C~~~------------~C~--~~C~~~g~C~-~~~   99 (248)
                      .|.|++||+|+.|+. .| .+|.++|+|.+ +++|.|++||.|..|+..            .|.  .+|.+++.|. +.+
T Consensus       186 ~c~C~~g~~G~~C~~-~C-~~C~~~G~C~~~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C~~~~~  263 (423)
T 2gy5_A          186 VRRCEAQKWGPECNH-LC-TACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPY  263 (423)
T ss_dssp             ECSSCTTEESTTSCE-EC-CCCCTTCEECTTTCCEECCTTEESTTSCEECCTTEESTTSCEECCSTTTTTTCCEEETTTT
T ss_pred             CCcCCCCCCCCCCCC-CC-CCCCCCCEEECCCCcEeCCCCccCCCcccccCCCCCCCCcCccCCCCCCCCCCCEECCCCC
Confidence            488999999999985 34 37889999997 789999999999999842            222  3466677776 568


Q ss_pred             ceeCCCCcccCCCCccCCC--CCCCCC--CCCCCCceeeCCCeeeCCCCCCCCCCCcCCCCCCCCCCCCCCccCCCCeee
Q psy9568         100 KCRCPPGFLGDYCEIWQRP--YISKCI--IPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCA  175 (248)
Q Consensus       100 ~C~C~~g~~g~~C~~~~~~--~~~~c~--~~C~~~g~C~~~~~C~C~~g~~g~~C~~~~~~~~c~~~C~~g~C~~~~~C~  175 (248)
                      .|.|.+||.|..|+.....  ....|.  -+|.+++.|...+.|.|.+||+|.+|+.......  .+   ........|.
T Consensus       264 ~C~C~~G~~G~~C~~~C~~G~~G~~C~~~C~C~ngg~C~~~~~C~C~~G~~G~~Ce~~~~~~~--~~---~~~~~~~~~~  338 (423)
T 2gy5_A          264 GCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQCEREGIPRM--TP---KIVDLPDHIE  338 (423)
T ss_dssp             EEECCBTCBSGGGCBCCCTTBCSBTTCCBCCCTTCCEEETTTEEECCTTCBSTTSCBCSSCCC--CC---EECSCCSBCC
T ss_pred             eEEeCCCcccccccCccCCCCcCCcccccccCCCCCEecCCCceECCCCCcCCCCccCccCCc--Cc---ceecCCCeEE
Confidence            8999999999888752211  112232  1577888888666788888888888886322111  11   1111244578


Q ss_pred             cCCCCccCCCC
Q psy9568         176 CYEGWFGRTCS  186 (248)
Q Consensus       176 C~~g~~G~~C~  186 (248)
                      |.+||.|..|+
T Consensus       339 c~~g~~g~~C~  349 (423)
T 2gy5_A          339 VNSGKFNPICK  349 (423)
T ss_dssp             EESEEECCEEE
T ss_pred             eCCCccCCccc
Confidence            88888887765

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=99.54  E-value=7e-15  Score=134.95  Aligned_cols=129  Identities=30%  Similarity=0.663  Sum_probs=101.3

Q ss_pred             CCCCCCCeecCCCceeeCCCCccCCCCcC-----------CCC-----CCCCCCceecCCCceeCC------CCcccCCC
Q psy9568          55 EKCLNGGKCVQKDTCECQKGFYGLRCEFS-----------KCI-----IPCLNGGRCKGVNKCRCP------PGFLGDYC  112 (248)
Q Consensus        55 ~~C~~~g~C~~~~~C~C~~g~~G~~C~~~-----------~C~-----~~C~~~g~C~~~~~C~C~------~g~~g~~C  112 (248)
                      ..|.++|+|.. +.|.|.+||.|..|+.+           .|.     .+|.++|.|. .++|.|.      +||+|..|
T Consensus       435 ~~Cs~~G~C~~-g~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~-~G~C~C~~~~~~~~G~~G~~C  512 (687)
T 3k6s_B          435 SLCHGKGFLEC-GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCV-CGQCLCHTSDVPGKLIYGQYC  512 (687)
T ss_dssp             STGGGSEEESS-SSEEECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEE-TTEEEECCCCSTTCCEESTTS
T ss_pred             CCCCCCCEEeC-CEeEcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEe-CCEEEcCCCCCCCCCcccccc
Confidence            46888999985 89999999999999831           365     2489999999 4799999      99999999


Q ss_pred             CccCCCCCCCCCCCCCC--CceeeCCCeeeCCCCCCCCCCCcCCCCCCCC----CCCCC-CccCCCCeeecCCCCccCCC
Q psy9568         113 EIWQRPYISKCIIPCLN--GGRCKGVNKCRCPPGFLGDYCEIWQRPYICP----KPCKQ-GVCSAARTCACYEGWFGRTC  185 (248)
Q Consensus       113 ~~~~~~~~~~c~~~C~~--~g~C~~~~~C~C~~g~~g~~C~~~~~~~~c~----~~C~~-g~C~~~~~C~C~~g~~G~~C  185 (248)
                      +.....+...-..+|.+  +|.|.. ++|.|.+||+|..|+...+...|.    .+|.+ |.|.. ++|.|.+||+|..|
T Consensus       513 e~~~~~C~~~~~~~C~~~~~G~C~~-g~C~C~~G~~G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~-g~C~C~~Gy~G~~C  590 (687)
T 3k6s_B          513 ECDTINCERYNGQVCGGPGRGLCFC-GKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC-NVCECHSGYQLPLC  590 (687)
T ss_dssp             CEESSCSCEETTEETSHHHHEEEET-TEEEECTTCCSTTSCSCCSSCTTBCTTCSBTSSSCCBCS-SCBCCSTTCCTTTT
T ss_pred             ccccccccCCCCcCcCCCCCCeEEC-CEEEcCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcCCC-CEEECCCCCcCCCC
Confidence            85443332111135888  899985 799999999999999543345563    26876 88984 89999999999999


Q ss_pred             CC
Q psy9568         186 SQ  187 (248)
Q Consensus       186 ~~  187 (248)
                      ++
T Consensus       591 e~  592 (687)
T 3k6s_B          591 QE  592 (687)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.54  E-value=2.3e-14  Score=106.49  Aligned_cols=97  Identities=37%  Similarity=1.037  Sum_probs=53.1

Q ss_pred             cCCCC---cCCCCCCEeecC---CceeeCCCCcCCCCCc--CCCC-CCCCCCCeecC---CCceeeCCCCccCCCC--cC
Q psy9568          18 SGICT---EKCLNGGKCVQK---DTCECQKGFYGLRCEF--CICT-EKCLNGGKCVQ---KDTCECQKGFYGLRCE--FS   83 (248)
Q Consensus        18 ~~~C~---~~C~~~g~C~~~---~~C~C~~G~~G~~C~~--~~c~-~~C~~~g~C~~---~~~C~C~~g~~G~~C~--~~   83 (248)
                      .+.|.   ++|.++|+|++.   +.|.|++||+|..|+.  ..|. .+|.++++|++   .++|.|++||.|..|+  ++
T Consensus         5 ideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~G~~C~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~   84 (135)
T 2vj3_A            5 VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTD   84 (135)
T ss_dssp             CCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSCEECCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSCEECC
T ss_pred             cccccCCCCCCCCCCEeECCCCCEEEECCCCCcCCcccccCccCCCCCCCCCCEEeCCCCCceeeCCCCCcCCcceecCC
Confidence            35554   367777777653   4677777777766652  2242 34655566654   2356666666665554  23


Q ss_pred             CCC-CCCCCCceec---CCCceeCCCCcccCCCCc
Q psy9568          84 KCI-IPCLNGGRCK---GVNKCRCPPGFLGDYCEI  114 (248)
Q Consensus        84 ~C~-~~C~~~g~C~---~~~~C~C~~g~~g~~C~~  114 (248)
                      +|. .+|.++++|+   +.|+|.|++||+|..|+.
T Consensus        85 ~C~~~~C~~~g~C~~~~g~~~C~C~~G~~G~~C~~  119 (135)
T 2vj3_A           85 ECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV  119 (135)
T ss_dssp             TTTTCCSTTTCEEEECSSCEEEECCTTEESSSSCE
T ss_pred             cccCCCcCCCCEeECCCCCeEEECCCCCcCCccCc
Confidence            443 4455555554   334555555555555543

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.53  E-value=3.8e-16  Score=122.44  Aligned_cols=73  Identities=30%  Similarity=0.658  Sum_probs=36.8

Q ss_pred             cCCCCCCEeecC---CceeeCCCCcCC---CCC-cCCCC-----CCCCCCCeecCC--------CceeeCCCCccCCC--
Q psy9568          23 EKCLNGGKCVQK---DTCECQKGFYGL---RCE-FCICT-----EKCLNGGKCVQK--------DTCECQKGFYGLRC--   80 (248)
Q Consensus        23 ~~C~~~g~C~~~---~~C~C~~G~~G~---~C~-~~~c~-----~~C~~~g~C~~~--------~~C~C~~g~~G~~C--   80 (248)
                      ++|.+ |+|++.   +.|.|++||+|.   .|+ +..|.     .+|.++++|++.        ++|.|++||.|..+  
T Consensus        11 ~pC~n-g~C~~~~g~~~C~C~~G~~g~~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~~~C   89 (186)
T 1z1y_A           11 TICXN-GQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTC   89 (186)
T ss_dssp             CCCBT-EEEEECSSCEEEEECTTEEEEETTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEETTEE
T ss_pred             CCCCC-CEeECCCCCeEeECCCCCccCCCCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCCCCC
Confidence            35653 477652   567777777765   453 23343     235555566542        24555555555422  


Q ss_pred             CcCCCC-CCCCCCceec
Q psy9568          81 EFSKCI-IPCLNGGRCK   96 (248)
Q Consensus        81 ~~~~C~-~~C~~~g~C~   96 (248)
                      ++++|. .+|.+++.|+
T Consensus        90 ~~d~C~~~~C~~~g~C~  106 (186)
T 1z1y_A           90 VLDVCQYXNCGESGECI  106 (186)
T ss_dssp             EEGGGTTCCCCTTEEEE
T ss_pred             CCCcCcCCCCCCCCEEe
Confidence            233443 3344444443

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.50  E-value=1.1e-15  Score=119.87  Aligned_cols=129  Identities=26%  Similarity=0.580  Sum_probs=98.5

Q ss_pred             CCCCCCCCeecC---CCceeeCCCCccC---CCC-cCCCC-----CCCCCCceec--------CCCceeCCCCcccCCCC
Q psy9568          54 TEKCLNGGKCVQ---KDTCECQKGFYGL---RCE-FSKCI-----IPCLNGGRCK--------GVNKCRCPPGFLGDYCE  113 (248)
Q Consensus        54 ~~~C~~~g~C~~---~~~C~C~~g~~G~---~C~-~~~C~-----~~C~~~g~C~--------~~~~C~C~~g~~g~~C~  113 (248)
                      ..+|.+ |+|++   .++|.|++||.|.   .|+ +++|.     .+|.+++.|+        +.|.|.|++||+|..++
T Consensus        10 ~~pC~n-g~C~~~~g~~~C~C~~G~~g~~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~~~   88 (186)
T 1z1y_A           10 DTICXN-GQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDT   88 (186)
T ss_dssp             TCCCBT-EEEEECSSCEEEEECTTEEEEETTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEETTE
T ss_pred             CCCCCC-CEeECCCCCeEeECCCCCccCCCCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCCCC
Confidence            357874 59987   5699999999987   774 57786     4598889997        25689999999998654


Q ss_pred             ccCCCCCCCCC-CCCCCCceee-------CCCeeeCCCCCCC-----CCCCcCCCCCCCCCCC-CC-CccC---CCCeee
Q psy9568         114 IWQRPYISKCI-IPCLNGGRCK-------GVNKCRCPPGFLG-----DYCEIWQRPYICPKPC-KQ-GVCS---AARTCA  175 (248)
Q Consensus       114 ~~~~~~~~~c~-~~C~~~g~C~-------~~~~C~C~~g~~g-----~~C~~~~~~~~c~~~C-~~-g~C~---~~~~C~  175 (248)
                      -..    ++|. .+|.+++.|+       +.|+|.|++||+|     ..|+.. +.++|..+| .+ ++|+   ++|+|.
T Consensus        89 C~~----d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~-~~~~C~~~C~~~~~~C~n~~g~y~C~  163 (186)
T 1z1y_A           89 CVL----DVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXT-GETACQLXCNTDNEVCXNVEGVYXCQ  163 (186)
T ss_dssp             EEE----GGGTTCCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEE-ECCCCCCCCCTTTEEEEEETTEEEEE
T ss_pred             CCC----CcCcCCCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEc-CCCcccccccccCcceecCCCCeeeE
Confidence            322    2332 4788889997       2479999999998     667642 235676789 65 8897   788999


Q ss_pred             cCCCCccCCCCCC
Q psy9568         176 CYEGWFGRTCSQR  188 (248)
Q Consensus       176 C~~g~~G~~C~~~  188 (248)
                      |++||+|..++..
T Consensus       164 C~~G~~g~~~~~~  176 (186)
T 1z1y_A          164 CMEGFTFDXEXNV  176 (186)
T ss_dssp             ECTTCEEETTTTE
T ss_pred             CCCCCccCccccc
Confidence            9999999988654

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=99.48  E-value=1.4e-13  Score=120.56  Aligned_cols=154  Identities=27%  Similarity=0.591  Sum_probs=105.8

Q ss_pred             CCCCc---CCCCCCEeec-CCceeeCCCCcCCCCCcC------------CC--CCCCCCCCeecC-CCceeeCCCCccCC
Q psy9568          19 GICTE---KCLNGGKCVQ-KDTCECQKGFYGLRCEFC------------IC--TEKCLNGGKCVQ-KDTCECQKGFYGLR   79 (248)
Q Consensus        19 ~~C~~---~C~~~g~C~~-~~~C~C~~G~~G~~C~~~------------~c--~~~C~~~g~C~~-~~~C~C~~g~~G~~   79 (248)
                      +.|..   +|.++|.|++ ++.|.|++||+|..|+..            .|  ...|.+++.|.. +++|.|.+||.|..
T Consensus       196 ~~C~~~C~~C~~~G~C~~~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C~~~~~~C~C~~G~~G~~  275 (423)
T 2gy5_A          196 PECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQ  275 (423)
T ss_dssp             TTSCEECCCCCTTCEECTTTCCEECCTTEESTTSCEECCTTEESTTSCEECCSTTTTTTCCEEETTTTEEECCBTCBSGG
T ss_pred             CCCCCCCCCCCCCCEEECCCCcEeCCCCccCCCcccccCCCCCCCCcCccCCCCCCCCCCCEECCCCCeEEeCCCccccc
Confidence            44544   7889999996 689999999999999842            12  235777788864 68999999999999


Q ss_pred             CCc--------CCCC--CCCCCCceecCCCceeCCCCcccCCCCccCCCCCCCCCCCCCCCceeeCCCeeeCCCCCCCCC
Q psy9568          80 CEF--------SKCI--IPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDY  149 (248)
Q Consensus        80 C~~--------~~C~--~~C~~~g~C~~~~~C~C~~g~~g~~C~~~~~~~~~~c~~~C~~~g~C~~~~~C~C~~g~~g~~  149 (248)
                      |+.        +.|.  .+|.++|.|...+.|.|.+||+|..|+........    +    ........|.|.+||.|..
T Consensus       276 C~~~C~~G~~G~~C~~~C~C~ngg~C~~~~~C~C~~G~~G~~Ce~~~~~~~~----~----~~~~~~~~~~c~~g~~g~~  347 (423)
T 2gy5_A          276 CNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQCEREGIPRMT----P----KIVDLPDHIEVNSGKFNPI  347 (423)
T ss_dssp             GCBCCCTTBCSBTTCCBCCCTTCCEEETTTEEECCTTCBSTTSCBCSSCCCC----C----EECSCCSBCCEESEEECCE
T ss_pred             ccCccCCCCcCCcccccccCCCCCEecCCCceECCCCCcCCCCccCccCCcC----c----ceecCCCeEEeCCCccCCc
Confidence            974        2333  26899999997677999999999999975322111    1    1111234678899999988


Q ss_pred             CCcCCCCCCCCCCCCCCc--cCCCCeeecCCCCccCC
Q psy9568         150 CEIWQRPYICPKPCKQGV--CSAARTCACYEGWFGRT  184 (248)
Q Consensus       150 C~~~~~~~~c~~~C~~g~--C~~~~~C~C~~g~~G~~  184 (248)
                      |+..    .++.+-....  +...+.|.+..++.+.+
T Consensus       348 C~~~----~~~~~~~~~~~~~~~~G~cl~~~~~~~~d  380 (423)
T 2gy5_A          348 CKAS----GWPLPTNEEMTLVKPDGTVLHPKDFNHTD  380 (423)
T ss_dssp             EEEE----CTTCCCGGGEEEECTTSCEECCSEEEECS
T ss_pred             cccc----CCcCCCCceEEEECCCeEEEeCCCcCccc
Confidence            8752    2222111111  23467788887776644

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.48  E-value=9.8e-14  Score=103.98  Aligned_cols=63  Identities=40%  Similarity=0.977  Sum_probs=46.6

Q ss_pred             CCCCCCceee----------CCCeeeCCCCCCCCCCCcCCCCCCC-CCCCCC-CccC---CCCeeecCCCCccCCCCCCC
Q psy9568         125 IPCLNGGRCK----------GVNKCRCPPGFLGDYCEIWQRPYIC-PKPCKQ-GVCS---AARTCACYEGWFGRTCSQRS  189 (248)
Q Consensus       125 ~~C~~~g~C~----------~~~~C~C~~g~~g~~C~~~~~~~~c-~~~C~~-g~C~---~~~~C~C~~g~~G~~C~~~~  189 (248)
                      .+|.+++.|+          +.+.|.|++||+|..|+..+  ++| ..+|.+ ++|+   ++|+|.|++||+|..|+...
T Consensus        58 ~~C~~~g~C~~~~~~~~~~~~~~~C~C~~G~~G~~C~~~i--~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~c~~~~  135 (143)
T 4d90_A           58 NPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNI--NECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQYKG  135 (143)
T ss_dssp             CCCCTTCEEEECCCEETTEECCEEEECCTTEESTTSCEEC--CTTTTCCSCTTCEEEEETTEEEEECCTTCBSTTSCBC-
T ss_pred             CCCCCCCEecCCCccccCCCCCeEeECcCCCcCCCcccCC--CcCCCCCCCCCCEeECCCCCeEeECCCCCccCCceecC
Confidence            4677777876          35788899999888887433  345 567876 7886   67789999999998887543

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.46  E-value=2.4e-13  Score=101.87  Aligned_cols=109  Identities=34%  Similarity=0.797  Sum_probs=69.5

Q ss_pred             cCCCCCCEeec-----CCceeeCCCCcCCCCCcCCCCCCCCCCCeecCCCceeeCCCCccCCCCcCCCC-CCCCCCceec
Q psy9568          23 EKCLNGGKCVQ-----KDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCI-IPCLNGGRCK   96 (248)
Q Consensus        23 ~~C~~~g~C~~-----~~~C~C~~G~~G~~C~~~~c~~~C~~~g~C~~~~~C~C~~g~~G~~C~~~~C~-~~C~~~g~C~   96 (248)
                      ++|.++|+|++     .+.|.|++||+|..|+.....  ......|.                +++.|. .+|.+++.|+
T Consensus         6 ~pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~~~~--~~~~~~c~----------------~~~~C~~~~C~~~g~C~   67 (143)
T 4d90_A            6 NPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEV--ASDEEEPT----------------SAGPCTPNPCHNGGTCE   67 (143)
T ss_dssp             CCCGGGCEEEC-----CCEEECCTTCCTTTTCSCCCC--TTTTTSCC----------------CCCTTSSCCCCTTCEEE
T ss_pred             CcCCCCCEeeCCCCCCCEEeECCCCCCCCCCccCccc--cccccccc----------------cCCcCCCCCCCCCCEec
Confidence            37888889975     257999999999888742210  00000000                122343 4577777775


Q ss_pred             ----------CCCceeCCCCcccCCCCccCCCCCCCCCCCCCCCceee---CCCeeeCCCCCCCCCCCc
Q psy9568          97 ----------GVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCEI  152 (248)
Q Consensus        97 ----------~~~~C~C~~g~~g~~C~~~~~~~~~~c~~~C~~~g~C~---~~~~C~C~~g~~g~~C~~  152 (248)
                                +.|.|.|++||.|..|+...+.+.   ..+|.+++.|+   +.|+|.|++||+|.+|+.
T Consensus        68 ~~~~~~~~~~~~~~C~C~~G~~G~~C~~~i~~C~---~~~C~~~~~C~~~~g~~~C~C~~G~~G~~c~~  133 (143)
T 4d90_A           68 ISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECE---VEPCKNGGICTDLVANYSCECPGEFMGRNCQY  133 (143)
T ss_dssp             ECCCEETTEECCEEEECCTTEESTTSCEECCTTT---TCCSCTTCEEEEETTEEEEECCTTCBSTTSCB
T ss_pred             CCCccccCCCCCeEeECcCCCcCCCcccCCCcCC---CCCCCCCCEeECCCCCeEeECCCCCccCCcee
Confidence                      357788888888888875443332   24677888886   446788888888888775

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=99.40  E-value=1.6e-13  Score=109.31  Aligned_cols=64  Identities=34%  Similarity=0.679  Sum_probs=36.8

Q ss_pred             CCCCCCceecCCCceeCCCC------cccCCCCccCCCCCCCCCCCCCCC--ceeeCCCeeeCCCCCCCCCCCc
Q psy9568          87 IPCLNGGRCKGVNKCRCPPG------FLGDYCEIWQRPYISKCIIPCLNG--GRCKGVNKCRCPPGFLGDYCEI  152 (248)
Q Consensus        87 ~~C~~~g~C~~~~~C~C~~g------~~g~~C~~~~~~~~~~c~~~C~~~--g~C~~~~~C~C~~g~~g~~C~~  152 (248)
                      .+|.++|+|+. +.|.|.+|      |+|..|+.....+......+|.++  |+|.. +.|.|.+||+|..|+.
T Consensus       143 ~~Csg~G~C~~-g~C~C~~gw~~~~~~~G~~Ce~~~~~C~~~~g~~C~~~~~G~C~~-g~C~C~~G~~G~~C~~  214 (217)
T 2p28_B          143 IICSGLGDCVC-GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC-GKCRCHPGFEGSACQH  214 (217)
T ss_dssp             CBGGGTEEEET-TEEEECCCCSTTCCEESTTSCEESSCSCEETTEETTCTTTEEEET-TEEEECTTEESTTSCE
T ss_pred             CCCCCCCEEeC-CceECCCCCCCcccEECCCcccCCccCCCCCCCCCCCCCCcEEeC-CeeECCCCCccCCcCC
Confidence            34666666663 56777776      466666643322221111246666  77764 5777777777777764

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.39  E-value=2.7e-13  Score=101.63  Aligned_cols=63  Identities=25%  Similarity=0.665  Sum_probs=45.4

Q ss_pred             cCCCCcCCCCCCEeecCCceeeCCCCcC---------CCCC-cCCCCC----CCCCCCeecC---CCceeeCCCCccCCC
Q psy9568          18 SGICTEKCLNGGKCVQKDTCECQKGFYG---------LRCE-FCICTE----KCLNGGKCVQ---KDTCECQKGFYGLRC   80 (248)
Q Consensus        18 ~~~C~~~C~~~g~C~~~~~C~C~~G~~G---------~~C~-~~~c~~----~C~~~g~C~~---~~~C~C~~g~~G~~C   80 (248)
                      ...|+++|.++|.|++.+.|.|++||+|         ..|. +..|..    +|.++++|++   .++|.|++||.|..+
T Consensus         2 ~~~C~~~C~~~~~C~~~~~C~C~~G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~   81 (143)
T 2bou_A            2 SRGCARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSG   81 (143)
T ss_dssp             -CCCCTTCCTTEEESSSSCEEECTTEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTC
T ss_pred             CCCCcCcCCCCCEEcCCCEEeCCCCCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcC
Confidence            3568889999999998889999999987         4563 334532    5777777775   457777777777644

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.35  E-value=3.9e-16  Score=127.00  Aligned_cols=150  Identities=17%  Similarity=0.076  Sum_probs=102.7

Q ss_pred             cCCCCCCEeec---CCceeeCCCCcCCCCCcCC--C-------CCCCCCCCeecCCCceeeCCCCccCCCCc-CCCC-CC
Q psy9568          23 EKCLNGGKCVQ---KDTCECQKGFYGLRCEFCI--C-------TEKCLNGGKCVQKDTCECQKGFYGLRCEF-SKCI-IP   88 (248)
Q Consensus        23 ~~C~~~g~C~~---~~~C~C~~G~~G~~C~~~~--c-------~~~C~~~g~C~~~~~C~C~~g~~G~~C~~-~~C~-~~   88 (248)
                      .+|.++|.|++   +|.|.|++||+|..|++.+  |       ..+|+++++|           |.|..|+. .+|. .|
T Consensus        38 ~~c~ngG~C~~g~~~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~nggtc-----------~~G~~c~~~~eC~s~p  106 (267)
T 4fbr_A           38 IKSDDGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVW-----------VLGARDKQNIVAVSIK  106 (267)
T ss_dssp             EECSSTTSEEEEEEEETTSCCEEEEEEECSTTEEEEEEESSSTTSCEEEEEEE-----------ECCCCSSCCEEEEEEE
T ss_pred             CCcCCCCeecCCCCCeEEeCCCCcccccccccccccccccCcCCCcccCCCee-----------eccCccccccccCCCC
Confidence            37889999986   4899999999999998543  2       2345444443           35667753 3555 78


Q ss_pred             CCCCceec---CCCceeCCCCcccCCCCccCCCCCCCCCCCCCCCceeeCCCeeeCCCCCCCCCCCcCCCCCCCCCCCCC
Q psy9568          89 CLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQ  165 (248)
Q Consensus        89 C~~~g~C~---~~~~C~C~~g~~g~~C~~~~~~~~~~c~~~C~~~g~C~~~~~C~C~~g~~g~~C~~~~~~~~c~~~C~~  165 (248)
                      |.++|+|+   .+|+|.|+.||+|..|+.....+..   .++.+.+.|..     +...+.|.+|+..+  +.+..+|.+
T Consensus       107 C~ngG~C~~~~~sy~C~C~~Gf~G~~Ce~~~d~C~n---~~~c~s~pC~n-----gg~c~~G~~c~~~i--~c~~~~c~n  176 (267)
T 4fbr_A          107 SNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVEN---QWGGSAAPWHS-----GGVWVLGTRGKQNV--INVDAKSND  176 (267)
T ss_dssp             CSSTTSEEEEEEEETTSCCEEEEEEECCCCEEEEEE---ECSSTTSCCEE-----EEEEECCSSTTSCE--EEEEEECSS
T ss_pred             CCCCCEEecCCccEEeeCCCCccccCCCCCcccccc---cCCcCCccccC-----Ccceeccccccccc--ccCCCCCCC
Confidence            99999998   5699999999999999876533211   12222222221     11123466776632  233667776


Q ss_pred             -CccC---CCCeeecCCCCccCCCCCCCCCCC
Q psy9568         166 -GVCS---AARTCACYEGWFGRTCSQRSDSGE  193 (248)
Q Consensus       166 -g~C~---~~~~C~C~~g~~G~~C~~~~~~~~  193 (248)
                       |+|+   .+|+|.|++||+|..|+..++++.
T Consensus       177 gg~C~dg~~~y~C~Cp~Gf~G~~c~~~i~ec~  208 (267)
T 4fbr_A          177 GGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVE  208 (267)
T ss_dssp             TTSEEEEEEEETTSCCEEEEEEEEETTEEEEE
T ss_pred             CCEeeCCCCCeEEeCCCCccccccccccceec
Confidence             8888   789999999999999998888743

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.27  E-value=5.3e-12  Score=94.52  Aligned_cols=61  Identities=28%  Similarity=0.769  Sum_probs=47.9

Q ss_pred             CCCCCCCCCeecCCCceeeCCCCcc---------CCCC-cCCCCC----CCCCCceec---CCCceeCCCCcccCCCC
Q psy9568          53 CTEKCLNGGKCVQKDTCECQKGFYG---------LRCE-FSKCII----PCLNGGRCK---GVNKCRCPPGFLGDYCE  113 (248)
Q Consensus        53 c~~~C~~~g~C~~~~~C~C~~g~~G---------~~C~-~~~C~~----~C~~~g~C~---~~~~C~C~~g~~g~~C~  113 (248)
                      |..+|.++++|++.++|.|++||.|         ..|+ +++|..    +|.+++.|+   +.|.|.|++||+|..++
T Consensus         5 C~~~C~~~~~C~~~~~C~C~~G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~   82 (143)
T 2bou_A            5 CARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGA   82 (143)
T ss_dssp             CCTTCCTTEEESSSSCEEECTTEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCC
T ss_pred             CcCcCCCCCEEcCCCEEeCCCCCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCc
Confidence            5678999999999899999999998         4663 567762    688888887   55788888888887544

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.17  E-value=2.6e-11  Score=83.48  Aligned_cols=20  Identities=30%  Similarity=0.820  Sum_probs=9.9

Q ss_pred             CCeeecCCCCccCCCCCCCC
Q psy9568         171 ARTCACYEGWFGRTCSQRSD  190 (248)
Q Consensus       171 ~~~C~C~~g~~G~~C~~~~~  190 (248)
                      .|+|.|++||+|..|+++++
T Consensus        70 ~~~C~C~~G~~G~~Ce~~id   89 (91)
T 1tpg_A           70 DFVCQCPEGFAGKSCEIDTR   89 (91)
T ss_dssp             CEEEECCTTCBSSSCCBCSS
T ss_pred             CeEeECCCCCcCCcCCcCCC
Confidence            34455555555555544443

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.15  E-value=3e-11  Score=83.16  Aligned_cols=74  Identities=27%  Similarity=0.618  Sum_probs=31.9

Q ss_pred             CceeeCCCCcCCCCCcCCCC-CCCCCCCeecCCCceeeCCCCccCCCC---cCCCC-CCCCCCceec-----CCCceeCC
Q psy9568          35 DTCECQKGFYGLRCEFCICT-EKCLNGGKCVQKDTCECQKGFYGLRCE---FSKCI-IPCLNGGRCK-----GVNKCRCP  104 (248)
Q Consensus        35 ~~C~C~~G~~G~~C~~~~c~-~~C~~~g~C~~~~~C~C~~g~~G~~C~---~~~C~-~~C~~~g~C~-----~~~~C~C~  104 (248)
                      |.|.|.+||+|..|++..|. .+|.++   ...++|.|++||.  .|+   +++|. .||.++|+|+     +.|.|.|+
T Consensus         2 y~C~C~~g~~g~~c~~~~c~~~pC~n~---~~~y~C~C~~G~~--~C~~~~~~~C~~~pC~ngg~C~~~~~~~~~~C~C~   76 (91)
T 1tpg_A            2 YQVICRDEKTQMIYQQHQSWLRPVLRS---NRVEYCWCNSGRA--QCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCP   76 (91)
T ss_dssp             CCCCCBCSSSCCBCCSSCEEEEECSSS---SCEEEEECSSSCC--BCCEECEEECSSCCSCTTCEEEEESSSSCEEEECC
T ss_pred             eeeECCCCCcCCeECCCcccCCccccC---CCCcEeECCCCCc--ccccCcCCcccCCCCCCCCEeecCCCCCCeEeECC
Confidence            44555555555555443331 223221   1123455555554  443   23343 3444444443     23344444


Q ss_pred             CCcccCCCC
Q psy9568         105 PGFLGDYCE  113 (248)
Q Consensus       105 ~g~~g~~C~  113 (248)
                      +||+|..|+
T Consensus        77 ~G~~G~~Ce   85 (91)
T 1tpg_A           77 EGFAGKSCE   85 (91)
T ss_dssp             TTCBSSSCC
T ss_pred             CCCcCCcCC
Confidence            444444444

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=99.13  E-value=3.4e-11  Score=95.93  Aligned_cols=106  Identities=27%  Similarity=0.628  Sum_probs=69.6

Q ss_pred             CCCCCCCeecCCCceeeCCCCccCCCCcCCCCCCCCCCceecCCCceeCCCCcccCCCCccCCCCCCCCCCCCCCCceee
Q psy9568          55 EKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCK  134 (248)
Q Consensus        55 ~~C~~~g~C~~~~~C~C~~g~~G~~C~~~~C~~~C~~~g~C~~~~~C~C~~g~~g~~C~~~~~~~~~~c~~~C~~~g~C~  134 (248)
                      ..|+++|+|+. +.|.|.+||+|..|+.+.-.  ...        .  +    .+..|...      ....+|+++|.|+
T Consensus        96 ~~Csg~G~C~~-g~C~C~~G~~G~~Cec~~~~--~~~--------~--~----~~~~C~~~------~~~~~Csg~G~C~  152 (217)
T 2p28_B           96 SLCHGKGFLEC-GICRCDTGYIGKNCECQTQG--RSS--------Q--E----LEGSCRKD------NNSIICSGLGDCV  152 (217)
T ss_dssp             CTTTTSEEEET-TEEEECTTEESTTSCEECCC--CC---------G--G----GGGGGBSS------TTSCBGGGTEEEE
T ss_pred             CccCCCceEEC-CEEECCCCccCCcccccCcc--ccc--------c--c----CCCcCCCC------CCCCCCCCCCEEe
Confidence            45778888885 78888888888888732100  000        0  0    01122210      0124788899998


Q ss_pred             CCCeeeCCCC------CCCCCCCcCCCCCCCCC----CCC-C--CccCCCCeeecCCCCccCCCCC
Q psy9568         135 GVNKCRCPPG------FLGDYCEIWQRPYICPK----PCK-Q--GVCSAARTCACYEGWFGRTCSQ  187 (248)
Q Consensus       135 ~~~~C~C~~g------~~g~~C~~~~~~~~c~~----~C~-~--g~C~~~~~C~C~~g~~G~~C~~  187 (248)
                      . +.|.|.+|      |+|..|+...  ..|+.    +|. +  |+|. .++|.|.+||+|..|+.
T Consensus       153 ~-g~C~C~~gw~~~~~~~G~~Ce~~~--~~C~~~~g~~C~~~~~G~C~-~g~C~C~~G~~G~~C~~  214 (217)
T 2p28_B          153 C-GQCLCHTSDVPGKLIYGQYCECDT--INCERYNGQVCGGPGRGLCF-CGKCRCHPGFEGSACQH  214 (217)
T ss_dssp             T-TEEEECCCCSTTCCEESTTSCEES--SCSCEETTEETTCTTTEEEE-TTEEEECTTEESTTSCE
T ss_pred             C-CceECCCCCCCcccEECCCcccCC--ccCCCCCCCCCCCCCCcEEe-CCeeECCCCCccCCcCC
Confidence            5 78999999      5899998532  34533    475 3  8888 57999999999999975

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.05  E-value=3.1e-10  Score=103.27  Aligned_cols=63  Identities=29%  Similarity=0.718  Sum_probs=38.7

Q ss_pred             CCCCc-CCCCCCEeecC----Cce-eeCCCCcC--CCCC-cCCCC-CC--CCCCC---eecC---CCcee-eCCCCccCC
Q psy9568          19 GICTE-KCLNGGKCVQK----DTC-ECQKGFYG--LRCE-FCICT-EK--CLNGG---KCVQ---KDTCE-CQKGFYGLR   79 (248)
Q Consensus        19 ~~C~~-~C~~~g~C~~~----~~C-~C~~G~~G--~~C~-~~~c~-~~--C~~~g---~C~~---~~~C~-C~~g~~G~~   79 (248)
                      ..|.. +|.+++.|++.    |.| .|++||+|  ..|+ +.+|. .+  |.+++   +|++   .|+|. |++||.|..
T Consensus         4 DeC~~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~   83 (634)
T 1yo8_A            4 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQ   83 (634)
T ss_dssp             CGGGGCCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEECC
T ss_pred             cccCCCCCCCCCEEecCCCCCeECCcCCCccCCCCCCccccccccCCCCcccCCccccceeeccCceecccCCCCcccCc
Confidence            34543 78777888752    568 78888876  6675 33353 23  66666   6665   34666 666666665


Q ss_pred             CC
Q psy9568          80 CE   81 (248)
Q Consensus        80 C~   81 (248)
                      |+
T Consensus        84 c~   85 (634)
T 1yo8_A           84 PV   85 (634)
T ss_dssp             CE
T ss_pred             cc
Confidence            43

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.04  E-value=3e-13  Score=110.09  Aligned_cols=142  Identities=15%  Similarity=0.037  Sum_probs=79.2

Q ss_pred             CCCCCCEeec---CCceeeCCCCcCCCCCcCC--CC-CCCCCCCeecCCCceeeCCCCccCCCCcCC--CCCCCCCCcee
Q psy9568          24 KCLNGGKCVQ---KDTCECQKGFYGLRCEFCI--CT-EKCLNGGKCVQKDTCECQKGFYGLRCEFSK--CIIPCLNGGRC   95 (248)
Q Consensus        24 ~C~~~g~C~~---~~~C~C~~G~~G~~C~~~~--c~-~~C~~~g~C~~~~~C~C~~g~~G~~C~~~~--C~~~C~~~g~C   95 (248)
                      +|.++|+|++   +|+|.|++||+|..|+..+  |. .++...+.|.+.++|     +.|.+|+...  +..+|.++|+|
T Consensus       106 pC~ngG~C~~~~~sy~C~C~~Gf~G~~Ce~~~d~C~n~~~c~s~pC~ngg~c-----~~G~~c~~~i~c~~~~c~ngg~C  180 (267)
T 4fbr_A          106 KSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVW-----VLGTRGKQNVINVDAKSNDGGKT  180 (267)
T ss_dssp             ECSSTTSEEEEEEEETTSCCEEEEEEECCCCEEEEEEECSSTTSCCEEEEEE-----ECCSSTTSCEEEEEEECSSTTSE
T ss_pred             CCCCCCEEecCCccEEeeCCCCccccCCCCCcccccccCCcCCccccCCcce-----ecccccccccccCCCCCCCCCEe
Confidence            6777777764   3677777777777776432  11 111111222221111     2355554321  22568888888


Q ss_pred             c---CCCceeCCCCcccCCCCccCCCCCCC--CC-CCCCCCceeeCCCeeeCCCCCCCCCCCcCCCCCCCCCCCCC-Ccc
Q psy9568          96 K---GVNKCRCPPGFLGDYCEIWQRPYISK--CI-IPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQ-GVC  168 (248)
Q Consensus        96 ~---~~~~C~C~~g~~g~~C~~~~~~~~~~--c~-~~C~~~g~C~~~~~C~C~~g~~g~~C~~~~~~~~c~~~C~~-g~C  168 (248)
                      +   .+|+|.|++||+|..|+..+......  +. .+|.+++.    +.+.|..++....++         .+|.+ |+|
T Consensus       181 ~dg~~~y~C~Cp~Gf~G~~c~~~i~ec~~~~~c~~~~c~~gG~----~~~~C~~g~n~~~c~---------~~c~ngGtC  247 (267)
T 4fbr_A          181 LSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNPGGF----WMIGARNGQNVVALN---------VASSDGGKT  247 (267)
T ss_dssp             EEEEEEETTSCCEEEEEEEEETTEEEEEEECSCTTSCCEEEEE----EECCCCTTCCEEEEE---------EECSSTTSE
T ss_pred             eCCCCCeEEeCCCCccccccccccceeccCCCccCCcccCCCe----EEEecCCCCccccCC---------cCCCCCCEe
Confidence            7   45788888888888887654321110  10 12333222    233466665444443         35555 788


Q ss_pred             C---CCCeeecCCCCccC
Q psy9568         169 S---AARTCACYEGWFGR  183 (248)
Q Consensus       169 ~---~~~~C~C~~g~~G~  183 (248)
                      +   .+|+|.|++||+|.
T Consensus       248 ~dg~~sy~CeCp~GF~G~  265 (267)
T 4fbr_A          248 LAGTMIYNGEGPIGFRAR  265 (267)
T ss_dssp             EEEEEEETTSCCEEEEEE
T ss_pred             eCCCcceeecCCCCcccc
Confidence            7   68999999999984

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=99.01  E-value=4.6e-11  Score=105.95  Aligned_cols=77  Identities=35%  Similarity=0.766  Sum_probs=35.4

Q ss_pred             eeeCCCCcCCCCCcCCCCCCCCCCCeecCCCceeeCCCCccCCCCcCCCCCCCCCCceecCCCceeCCCCcccCCCCc
Q psy9568          37 CECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEI  114 (248)
Q Consensus        37 C~C~~G~~G~~C~~~~c~~~C~~~g~C~~~~~C~C~~g~~G~~C~~~~C~~~C~~~g~C~~~~~C~C~~g~~g~~C~~  114 (248)
                      ..|..+|.|..|....|..+|.+ |+|+..++|.|.+||.|..|+.+.|..+|.++|+|+..+.|.|.+||+|..|+.
T Consensus       379 ~~C~~~~~g~~c~~~~C~~~C~n-G~C~~~~~C~C~~G~~G~~C~~~~C~~~C~~~g~C~~~~~C~C~~G~~G~~C~~  455 (463)
T 2wg3_C          379 EECRATVQPAQTLTSECSRLCRN-GYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQ  455 (463)
T ss_dssp             GGGCCCCCCCCCCCCHHHHHCCS-EEECTTSCEEECTTEESTTSCEECC-----------------------------
T ss_pred             ccCCCCCcCCCCccccccCCCCC-CccCCCCeECCCCCcCCCcCCcCcCCCCCCCCCEECCCCEEECCCCcccCCCCC
Confidence            56777777777776666666765 777776778888888888887777777777777777667777877887777765

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=98.96  E-value=4.7e-10  Score=85.58  Aligned_cols=71  Identities=31%  Similarity=0.757  Sum_probs=44.1

Q ss_pred             CCCCCCEeecC-----Cce-eeCCCCcCCCCCcCCCCCCCCCCCeecCCCceeeCCCCccCCCCc----CCCC-CCCCCC
Q psy9568          24 KCLNGGKCVQK-----DTC-ECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEF----SKCI-IPCLNG   92 (248)
Q Consensus        24 ~C~~~g~C~~~-----~~C-~C~~G~~G~~C~~~~c~~~C~~~g~C~~~~~C~C~~g~~G~~C~~----~~C~-~~C~~~   92 (248)
                      +|.+++.|+..     +.| .|++||+|..|+                    +|.+||+|..+..    ..|. ..|.++
T Consensus         2 ~C~~~g~C~~~~~~g~~~C~~C~~g~~G~~Ce--------------------~C~~g~~g~~~~~~~~~~~C~~C~C~~~   61 (162)
T 1klo_A            2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCE--------------------LCDDGYFGDPLGSNGPVRLCRPCQCNDN   61 (162)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSC--------------------EECTTEEEETTCTTSSCEEEEECCSTTC
T ss_pred             cCcCcCcccccCCCCCEEeCCCCCCCcCCCCc--------------------CCCCCCcCCcccccCCCCCCeeCcCCCC
Confidence            57888999742     479 799999999997                    3445555544321    1121 123332


Q ss_pred             ------ceec-CCCcee-CCCCcccCCCCc
Q psy9568          93 ------GRCK-GVNKCR-CPPGFLGDYCEI  114 (248)
Q Consensus        93 ------g~C~-~~~~C~-C~~g~~g~~C~~  114 (248)
                            +.|. ..++|+ |.++|+|..|+.
T Consensus        62 ~~~~~~~~C~~~tG~C~~C~~g~~G~~Ce~   91 (162)
T 1klo_A           62 IDPNAVGNCNRLTGECLKCIYNTAGFYCDR   91 (162)
T ss_dssp             BCTTCSCCBCTTTCCBCCBCTTEETTTTCE
T ss_pred             CCcccCCcccCCCCcccCCCCCCcCCCcCc
Confidence                  3454 346774 888888887763

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=98.84  E-value=2.7e-09  Score=97.05  Aligned_cols=105  Identities=28%  Similarity=0.650  Sum_probs=69.7

Q ss_pred             CCCCCCCeecC----CCce-eeCCCCcc--CCCC-cCCCC-CC--CCCCc---eec---CCCcee-CCCCcccCCCCcc-
Q psy9568          55 EKCLNGGKCVQ----KDTC-ECQKGFYG--LRCE-FSKCI-IP--CLNGG---RCK---GVNKCR-CPPGFLGDYCEIW-  115 (248)
Q Consensus        55 ~~C~~~g~C~~----~~~C-~C~~g~~G--~~C~-~~~C~-~~--C~~~g---~C~---~~~~C~-C~~g~~g~~C~~~-  115 (248)
                      .+|.++++|++    +++| .|++||+|  ..|+ +++|. .+  |.+++   .|+   +.|+|. |++||+|..|+.. 
T Consensus         9 nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~c~g~g   88 (634)
T 1yo8_A            9 NPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVG   88 (634)
T ss_dssp             CCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEECCCEESS
T ss_pred             CCCCCCCEEecCCCCCeECCcCCCccCCCCCCccccccccCCCCcccCCccccceeeccCceecccCCCCcccCcccccc
Confidence            57888888876    2578 88888887  6785 56776 44  88877   787   557887 8888888887610 


Q ss_pred             ---------CCCCCCCCC---CCCCCCceee-------CCCeeeCCCCCCC--CCCCcCCCCCCC
Q psy9568         116 ---------QRPYISKCI---IPCLNGGRCK-------GVNKCRCPPGFLG--DYCEIWQRPYIC  159 (248)
Q Consensus       116 ---------~~~~~~~c~---~~C~~~g~C~-------~~~~C~C~~g~~g--~~C~~~~~~~~c  159 (248)
                               ....+.+|.   .+|.+++.|+       +.|+|.|++||+|  ..|+...++++|
T Consensus        89 ~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG~~Ce~d~DiDeC  153 (634)
T 1yo8_A           89 LEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGW  153 (634)
T ss_dssp             SHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEESSSSEEECTTSSSS
T ss_pred             ccccccCCCcccccccccCCCcccccCccccccccccccceeeeccCCccccCcccccccCcccc
Confidence                     112234553   3677777775       2457777777776  566644344333

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=98.80  E-value=6.7e-10  Score=80.20  Aligned_cols=29  Identities=28%  Similarity=0.650  Sum_probs=16.1

Q ss_pred             CCCCc-CCCCCCEeecC----CceeeCCCCcCCCCC
Q psy9568          19 GICTE-KCLNGGKCVQK----DTCECQKGFYGLRCE   49 (248)
Q Consensus        19 ~~C~~-~C~~~g~C~~~----~~C~C~~G~~G~~C~   49 (248)
                      +.|.. +|.+  +|++.    |.|.|++||+|..++
T Consensus         5 deC~~~pC~~--~C~~~~~g~y~C~C~~Gy~g~~~~   38 (118)
T 1dx5_I            5 DPCFRANCEY--QCQPLDQTSYLCVCAEGFAPIPHE   38 (118)
T ss_dssp             CGGGGCCCSS--EEEECSSSCEEEECCTTEEEETTE
T ss_pred             ccCCCCCCCC--CCCCCCCCCEEeECCCCccccCCC
Confidence            34433 5542  66543    467777777766543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.79  E-value=8.2e-10  Score=97.94  Aligned_cols=76  Identities=41%  Similarity=0.899  Sum_probs=22.6

Q ss_pred             eeCCCCccCCCCcCCCCCCCCCCceecCCCceeCCCCcccCCCCccCCCCCCCCCCCCCCCceeeCCCeeeCCCCCCCCC
Q psy9568          70 ECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDY  149 (248)
Q Consensus        70 ~C~~g~~G~~C~~~~C~~~C~~~g~C~~~~~C~C~~g~~g~~C~~~~~~~~~~c~~~C~~~g~C~~~~~C~C~~g~~g~~  149 (248)
                      .|..+|.|..|+.+.|..+|.+ |.|...++|.|.+||+|..|+..      .|..+|.++|.|+..+.|.|.+||+|..
T Consensus       380 ~C~~~~~g~~c~~~~C~~~C~n-G~C~~~~~C~C~~G~~G~~C~~~------~C~~~C~~~g~C~~~~~C~C~~G~~G~~  452 (463)
T 2wg3_C          380 ECRATVQPAQTLTSECSRLCRN-GYCTPTGKCCCSPGWEGDFCRTA------KCEPACRHGGVCVRPNKCLCKKGYLGPQ  452 (463)
T ss_dssp             GGCCCCCCCCCCCCHHHHHCCS-EEECTTSCEEECTTEESTTSCEE------CC--------------------------
T ss_pred             cCCCCCcCCCCccccccCCCCC-CccCCCCeECCCCCcCCCcCCcC------cCCCCCCCCCEECCCCEEECCCCcccCC
Confidence            4445555555554444444544 45554445555555555555421      1223455555554434555555555555


Q ss_pred             CCc
Q psy9568         150 CEI  152 (248)
Q Consensus       150 C~~  152 (248)
                      |+.
T Consensus       453 C~~  455 (463)
T 2wg3_C          453 CEQ  455 (463)
T ss_dssp             ---
T ss_pred             CCC
Confidence            443

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.76  E-value=2.8e-10  Score=86.84  Aligned_cols=74  Identities=27%  Similarity=0.597  Sum_probs=42.3

Q ss_pred             CCceeCCCCcc-cCCCCccCCCCCCCCCCCCCCCceeeCCCeeeCCC--CCCCCCCCc-CCCCCCC---CCCCCCCccC-
Q psy9568          98 VNKCRCPPGFL-GDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPP--GFLGDYCEI-WQRPYIC---PKPCKQGVCS-  169 (248)
Q Consensus        98 ~~~C~C~~g~~-g~~C~~~~~~~~~~c~~~C~~~g~C~~~~~C~C~~--g~~g~~C~~-~~~~~~c---~~~C~~g~C~-  169 (248)
                      .|.|.|++||. +..|+.            |....  .+.|.|.|++  ||++..-.. ..++++|   +.+|.++.|+ 
T Consensus        74 ~~~C~C~~G~~~~~~C~~------------C~~~~--~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~~~~C~~g~C~n  139 (162)
T 1uzk_A           74 KASCCCSLGKAWGTPCEM------------CPAVN--TSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCIN  139 (162)
T ss_dssp             HHHHHTTTCCEETTTTEE------------CCCTT--SHHHHHHCTTCTTEEECTTTCCEEECCHHHHCGGGGBTSEEEE
T ss_pred             CceeeCCCCCCcCCCccc------------CCCCC--CCCceeECCCCCCcccCCCCCccCccccccCCCCCcCCCEeEc
Confidence            46777888876 444431            11110  1236777776  777652110 1234555   2457667776 


Q ss_pred             --CCCeeecCCCCccCCC
Q psy9568         170 --AARTCACYEGWFGRTC  185 (248)
Q Consensus       170 --~~~~C~C~~g~~G~~C  185 (248)
                        ++|+|.|++||+|..-
T Consensus       140 ~~gsy~C~C~~Gy~g~~d  157 (162)
T 1uzk_A          140 TFGSFQCRCPTGYYLNED  157 (162)
T ss_dssp             CSSCEEEECCTTCCBCTT
T ss_pred             CCCCEEeeCCCCccCCCC
Confidence              6788888888887543

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=98.68  E-value=6.3e-09  Score=75.04  Aligned_cols=76  Identities=28%  Similarity=0.614  Sum_probs=46.1

Q ss_pred             CCceeCCCCcccCCCCccCCCCCCCCCCCCCCC---ceee--CCCeeeCCCCCC---CCCCCcCCCCCCC--CCCCCCCc
Q psy9568          98 VNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNG---GRCK--GVNKCRCPPGFL---GDYCEIWQRPYIC--PKPCKQGV  167 (248)
Q Consensus        98 ~~~C~C~~g~~g~~C~~~~~~~~~~c~~~C~~~---g~C~--~~~~C~C~~g~~---g~~C~~~~~~~~c--~~~C~~g~  167 (248)
                      .|+|.|++||.|...++.      +|..+|.++   +.|+  +.|.|.|++||+   |..|+   ++++|  ..+| +++
T Consensus        23 ~y~C~C~~Gy~g~~~~~~------~C~~~C~~~~C~~~C~~~~~y~C~C~~Gy~~~~g~~C~---dideC~~~~~C-~~~   92 (118)
T 1dx5_I           23 SYLCVCAEGFAPIPHEPH------RCQMFCNQTACPADCDPNTQASCECPEGYILDDGFICT---DIDECENGGFC-SGV   92 (118)
T ss_dssp             CEEEECCTTEEEETTEEE------EEEECCCSSEEECEECTTSTTCEECCTTEEEETTTEEE---ECCHHHHCSSC-SSE
T ss_pred             CEEeECCCCccccCCCCC------ccccccCCCCCCCcccCCCCeEeECCCCccCCCCCccc---cccccCCCCCC-cCe
Confidence            366777777776543211      111112111   3443  457888888888   67774   24455  3677 677


Q ss_pred             cC---CCCeeecCCCCccC
Q psy9568         168 CS---AARTCACYEGWFGR  183 (248)
Q Consensus       168 C~---~~~~C~C~~g~~G~  183 (248)
                      |+   ++|+|.|++||+|.
T Consensus        93 C~n~~g~y~C~C~~G~~g~  111 (118)
T 1dx5_I           93 CHNLPGTFECICGPDSALA  111 (118)
T ss_dssp             EEECSSSEEEEECSSSSCE
T ss_pred             EEeCCCCEEEECCCCCccC
Confidence            76   78899999999874

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=98.60  E-value=1.4e-09  Score=81.57  Aligned_cols=46  Identities=30%  Similarity=0.660  Sum_probs=35.1

Q ss_pred             CeeeCCCCCC---CCCCCcCCCCCCC---CCCCCCCccC---CCCeeecCCCCccCCC
Q psy9568         137 NKCRCPPGFL---GDYCEIWQRPYIC---PKPCKQGVCS---AARTCACYEGWFGRTC  185 (248)
Q Consensus       137 ~~C~C~~g~~---g~~C~~~~~~~~c---~~~C~~g~C~---~~~~C~C~~g~~G~~C  185 (248)
                      +.|.|++||+   |..|+   ++++|   +.+|.+|+|+   ++|+|.|++||+|..-
T Consensus        88 ~~C~C~~Gy~~~~g~~C~---dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~  142 (147)
T 2w86_A           88 VDPICGKGYSRIKGTQCE---DIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDAT  142 (147)
T ss_dssp             CCTTTCTTEEEEETTEEE---ECCHHHHSTTCSSSSEEEEETTEEEEECCTTCCBCTT
T ss_pred             CcccCCCccccCCCCccC---ccccccCCCCCCCCCEEECCCCCEEeeCCCCCccCCC
Confidence            6778999995   77886   34566   3558888887   7899999999997643

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.50  E-value=3.6e-09  Score=80.67  Aligned_cols=121  Identities=29%  Similarity=0.657  Sum_probs=75.1

Q ss_pred             cCCCC--cCCCCCCEeecC---CceeeCCCCc----CCCCCc-CC--CC---CCC--CCCCeecC-------CCceeeCC
Q psy9568          18 SGICT--EKCLNGGKCVQK---DTCECQKGFY----GLRCEF-CI--CT---EKC--LNGGKCVQ-------KDTCECQK   73 (248)
Q Consensus        18 ~~~C~--~~C~~~g~C~~~---~~C~C~~G~~----G~~C~~-~~--c~---~~C--~~~g~C~~-------~~~C~C~~   73 (248)
                      .+.|.  ++|. +++|+++   |+|.|++||+    |..|.. ..  |.   .+|  ..+++|++       .+.|.|++
T Consensus         3 ideC~~~~~C~-~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C~~   81 (162)
T 1uzk_A            3 VNECLDPTTCI-SGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSL   81 (162)
T ss_dssp             CCGGGSTTSSB-TSEEEEETTEEEEECCTTCEECTTSSBEECCCCEEEEEEC----------CEEEEEEEECHHHHHTTT
T ss_pred             cccCCCCCCCC-CCEeECCCCCEEEeCCCCCeECCCCCcccCCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeCCC
Confidence            45564  5786 6999863   7999999998    788862 22  42   122  24677875       36899999


Q ss_pred             CCc-cCCCCcCCCCCCCCCCceecCCCceeCCC--CcccCCCCccCCCCCCCCC---CCCCCCceee---CCCeeeCCCC
Q psy9568          74 GFY-GLRCEFSKCIIPCLNGGRCKGVNKCRCPP--GFLGDYCEIWQRPYISKCI---IPCLNGGRCK---GVNKCRCPPG  144 (248)
Q Consensus        74 g~~-G~~C~~~~C~~~C~~~g~C~~~~~C~C~~--g~~g~~C~~~~~~~~~~c~---~~C~~~g~C~---~~~~C~C~~g  144 (248)
                      ||. |..|+.  |    ....  .+.|.|.|++  ||.+..-.. ....+++|.   .+|.+ +.|+   ++|+|.|++|
T Consensus        82 G~~~~~~C~~--C----~~~~--~~~y~C~C~~g~G~~~~~~~~-~c~dideC~~~~~~C~~-g~C~n~~gsy~C~C~~G  151 (162)
T 1uzk_A           82 GKAWGTPCEM--C----PAVN--TSEYKILCPGGEGFRPNPITV-ILEDIDECQELPGLCQG-GKCINTFGSFQCRCPTG  151 (162)
T ss_dssp             CCEETTTTEE--C----CCTT--SHHHHHHCTTCTTEEECTTTC-CEEECCHHHHCGGGGBT-SEEEECSSCEEEECCTT
T ss_pred             CCCcCCCccc--C----CCCC--CCCceeECCCCCCcccCCCCC-ccCccccccCCCCCcCC-CEeEcCCCCEEeeCCCC
Confidence            998 666652  2    2111  1347899988  999863110 001223443   35875 6897   6689999999


Q ss_pred             CCCCC
Q psy9568         145 FLGDY  149 (248)
Q Consensus       145 ~~g~~  149 (248)
                      |+|..
T Consensus       152 y~g~~  156 (162)
T 1uzk_A          152 YYLNE  156 (162)
T ss_dssp             CCBCT
T ss_pred             ccCCC
Confidence            99864

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=98.49  E-value=1.8e-07  Score=84.31  Aligned_cols=59  Identities=29%  Similarity=0.744  Sum_probs=17.8

Q ss_pred             CCceee-CCCeeeCCCCCCCCCCCcC--------CCCCCC-CCCCCC-Cc----cC-CCCeeecCCCCccCCCCC
Q psy9568         129 NGGRCK-GVNKCRCPPGFLGDYCEIW--------QRPYIC-PKPCKQ-GV----CS-AARTCACYEGWFGRTCSQ  187 (248)
Q Consensus       129 ~~g~C~-~~~~C~C~~g~~g~~C~~~--------~~~~~c-~~~C~~-g~----C~-~~~~C~C~~g~~G~~C~~  187 (248)
                      +++.|. ..++|.|.+||+|.+|+..        .+...| +.+|.+ |.    |. .+++|.|++||+|..|++
T Consensus       451 ~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~G~~G~~Ceq  525 (525)
T 4aqs_A          451 GGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE  525 (525)
T ss_dssp             SSCCBCTTTCCBCBCTTCCSTTTCC--------------------------------------------------
T ss_pred             CCCcccCCCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcCCCCCCCCccCCccCCCCCeeECCCCCcCCCCCC
Confidence            334444 3468999999999999742        122334 445654 33    43 467899999999999974

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=98.44  E-value=7.4e-09  Score=77.59  Aligned_cols=114  Identities=28%  Similarity=0.558  Sum_probs=70.9

Q ss_pred             cCCCCc-CCCCCCEeecC---CceeeCCCCcCCCCCcCCCCCCCCCCCeecCCCceeeCCCCccCCCCc--CCCC-----
Q psy9568          18 SGICTE-KCLNGGKCVQK---DTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEF--SKCI-----   86 (248)
Q Consensus        18 ~~~C~~-~C~~~g~C~~~---~~C~C~~G~~G~~C~~~~c~~~C~~~g~C~~~~~C~C~~g~~G~~C~~--~~C~-----   86 (248)
                      .+.|.. +|.+ |+|++.   |.|.|++||+|..+.           ..|++.....|..+|.|..|+.  +.|.     
T Consensus         4 ideC~~~pC~n-g~C~n~~g~y~C~C~~G~~g~~~~-----------~~C~~~~~~~C~~~~~g~~C~~~~~~c~~~~~C   71 (147)
T 2w86_A            4 IDECESSPCIN-GVCKNSPGSFICECSSESTLDPTK-----------TICIETIKGTCWQTVIDGRCEININGATLKSQC   71 (147)
T ss_dssp             CCGGGGCCSBT-SEEEEETTEEEEECCTTEEECTTS-----------SBEEECCCEEEEEEEETTEEEEEEEEEECHHHH
T ss_pred             CccCcCCCCCC-CEeECCCCCEEeECCCCcccCCCC-----------CeecCCCCCcccCCCCCCccccCCCccccCCcc
Confidence            345554 7874 799863   789999999987653           2343333345666666666653  2221     


Q ss_pred             ---CCCCCCceec-CCCceeCCCCcc---cCCCCccCCCCCCCCC---CCCCCCceee---CCCeeeCCCCCCCCC
Q psy9568          87 ---IPCLNGGRCK-GVNKCRCPPGFL---GDYCEIWQRPYISKCI---IPCLNGGRCK---GVNKCRCPPGFLGDY  149 (248)
Q Consensus        87 ---~~C~~~g~C~-~~~~C~C~~g~~---g~~C~~~~~~~~~~c~---~~C~~~g~C~---~~~~C~C~~g~~g~~  149 (248)
                         .....++.|. -.+.|.|++||+   |..|+ .+    ++|.   .+|.+ +.|+   ++|+|.|++||+|..
T Consensus        72 ~~~~g~~~g~~C~~c~~~C~C~~Gy~~~~g~~C~-di----deC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~g~~  141 (147)
T 2w86_A           72 CSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCE-DI----DECEVFPGVCKN-GLCVNTRGSFKCQCPSGMTLDA  141 (147)
T ss_dssp             HTTTCSEETTTTEECCCCTTTCTTEEEEETTEEE-EC----CHHHHSTTCSSS-SEEEEETTEEEEECCTTCCBCT
T ss_pred             ccCcCcccCCCcccCCCcccCCCccccCCCCccC-cc----ccccCCCCCCCC-CEEECCCCCEEeeCCCCCccCC
Confidence               0011111121 137889999995   78886 22    3442   34875 5887   568999999998864

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=98.31  E-value=6.1e-07  Score=64.07  Aligned_cols=27  Identities=30%  Similarity=0.918  Sum_probs=16.5

Q ss_pred             cCCCCCCEeecC---CceeeCCCCcCCCCC
Q psy9568          23 EKCLNGGKCVQK---DTCECQKGFYGLRCE   49 (248)
Q Consensus        23 ~~C~~~g~C~~~---~~C~C~~G~~G~~C~   49 (248)
                      ..|.++|.|++.   |.|.|++||+|..|+
T Consensus        20 ~~C~~~g~C~~~~~~y~C~C~~G~~G~~C~   49 (114)
T 1aut_L           20 SLCCGHGTCIDGIGSFSCDCRSGWEGRFCQ   49 (114)
T ss_dssp             STTTTSEEECCCSSCCCEEECTTEESTTSC
T ss_pred             ccCCCcCCCCCCCCCcEeeCCCCCcCCCcC
Confidence            336666666542   566666666666665

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=98.21  E-value=8.1e-07  Score=63.42  Aligned_cols=57  Identities=28%  Similarity=0.698  Sum_probs=29.4

Q ss_pred             CCCCCceee---CCCeeeCCCCCCCCCCCcCCCCCCCC---CCCCCCccC---CCCeeecCCCCccC
Q psy9568         126 PCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYICP---KPCKQGVCS---AARTCACYEGWFGR  183 (248)
Q Consensus       126 ~C~~~g~C~---~~~~C~C~~g~~g~~C~~~~~~~~c~---~~C~~g~C~---~~~~C~C~~g~~G~  183 (248)
                      .|.++|+|+   +.|+|.|.+||+|..|+...+.++|.   ..|.+ +|+   ++|+|.|++||+|.
T Consensus        21 ~C~~~g~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~-~C~n~~g~y~C~C~~G~~~~   86 (114)
T 1aut_L           21 LCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH-YCLEEVGWRRCSCAPGYKLG   86 (114)
T ss_dssp             TTTTSEEECCCSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCSS-EEEECSSSEEEECCTTEEEC
T ss_pred             cCCCcCCCCCCCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCC-EeECCCCCEEeECCCCeeEC
Confidence            355555665   33566666666666665433222231   11211 443   56677777777743

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=98.20  E-value=8.2e-07  Score=66.27  Aligned_cols=59  Identities=41%  Similarity=0.991  Sum_probs=40.9

Q ss_pred             CCCCCCceee---CCCeeeCCCCCCCCCCCcCCCCCCCC---CCCCCCcc-C---CCCeeecCCCCc----cCCCCC
Q psy9568         125 IPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYICP---KPCKQGVC-S---AARTCACYEGWF----GRTCSQ  187 (248)
Q Consensus       125 ~~C~~~g~C~---~~~~C~C~~g~~g~~C~~~~~~~~c~---~~C~~g~C-~---~~~~C~C~~g~~----G~~C~~  187 (248)
                      .+|.++|.|+   +.|.|.|++||+|..|+..   +.|.   .+|.+ +| +   ++|.|.|++||+    |..|+.
T Consensus        54 ~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~---deC~~~~~~C~~-~C~~n~~g~y~C~C~~Gy~l~~dG~~C~~  126 (146)
T 1x7a_L           54 NPCLNGGLCKDDINSYECWCQVGFEGKNCELD---ATCNIKNGRCKQ-FCKTGADSKVLCSCTTGYRLAPDQKSCKP  126 (146)
T ss_dssp             CSSCTTCEEEECSSCEEEECCSSEESTTTCEE---CCTTSGGGSCSS-BCCCCSSSCCCCBCCTTEEECTTSSSEEE
T ss_pred             CCCCCCCEeECCCCCEEEecCCCCcCCcCCCC---ccccCCCCCCcC-CCCCCCCCCEEeEcCCCcEeCCCCCcCCC
Confidence            4677777776   4567888888888877753   3442   23444 56 4   688999999999    777753

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=98.19  E-value=1e-06  Score=59.00  Aligned_cols=56  Identities=34%  Similarity=0.899  Sum_probs=38.1

Q ss_pred             CCCCCCceee---CCCeeeCCCCCC--CCCCCcCCCCCCC--CCCCCCCccC---CCCeeecCCCCccCC
Q psy9568         125 IPCLNGGRCK---GVNKCRCPPGFL--GDYCEIWQRPYIC--PKPCKQGVCS---AARTCACYEGWFGRT  184 (248)
Q Consensus       125 ~~C~~~g~C~---~~~~C~C~~g~~--g~~C~~~~~~~~c--~~~C~~g~C~---~~~~C~C~~g~~G~~  184 (248)
                      .+|.+ +.|+   +.|+|.|++||+  |..|+.   +++|  ..+|.+++|+   ++|+|.|++||+|..
T Consensus        12 ~~C~~-g~C~n~~g~y~C~C~~Gy~~~g~~C~d---ideC~~~~~C~~~~C~n~~g~y~C~C~~G~~g~~   77 (82)
T 1emn_A           12 DVCKH-GQCINTDGSYRCECPFGYILAGNECVD---TDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGP   77 (82)
T ss_dssp             TSCSS-SEECCCSSCCCEECCTTEEEETTEEEE---CCGGGTCCTTSSSCEEECSSSEEECCSSSSCCCS
T ss_pred             CCcCC-CEEEecCCCEEEECCCCeECCCCccCC---cccccCCCCCCCCEeECCCCCEEeECCCCeEeCC
Confidence            35654 6676   457788888886  666742   3445  4567777776   678888888888753

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=98.15  E-value=1.4e-06  Score=78.52  Aligned_cols=86  Identities=28%  Similarity=0.676  Sum_probs=32.7

Q ss_pred             Cce-eeCCCCccCCCCc-CCCC-CCCCCCce------ec-CCCceeCCCCcccCCCCccCCCC------CCCCC-CCCCC
Q psy9568          67 DTC-ECQKGFYGLRCEF-SKCI-IPCLNGGR------CK-GVNKCRCPPGFLGDYCEIWQRPY------ISKCI-IPCLN  129 (248)
Q Consensus        67 ~~C-~C~~g~~G~~C~~-~~C~-~~C~~~g~------C~-~~~~C~C~~g~~g~~C~~~~~~~------~~~c~-~~C~~  129 (248)
                      ..| +|.+||+|..|+. ..|. .+|.++|.      |. ..++|.|.+||+|..|+.-...+      ...|. .+|.+
T Consensus       418 ~~C~~C~~Gy~G~~c~~~~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C~C~~  497 (525)
T 4aqs_A          418 ERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDL  497 (525)
T ss_dssp             TTTCEECTTEECCCTTSTTSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC----------------------
T ss_pred             CcccCCCCCCcCCCCCCCCCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcCCCCCC
Confidence            355 7888888877753 2343 34544444      43 34789999999999997422111      11232 35666


Q ss_pred             Cceee-----CCCeeeCCCCCCCCCCCc
Q psy9568         130 GGRCK-----GVNKCRCPPGFLGDYCEI  152 (248)
Q Consensus       130 ~g~C~-----~~~~C~C~~g~~g~~C~~  152 (248)
                      +|.+.     ..++|.|.+||+|..|+.
T Consensus       498 ~gs~~~~C~~~tG~C~C~~G~~G~~Ceq  525 (525)
T 4aqs_A          498 GGALNNSCSEDSGQCSCLPHMIGRQCNE  525 (525)
T ss_dssp             ----------------------------
T ss_pred             CCccCCccCCCCCeeECCCCCcCCCCCC
Confidence            66543     246899999999999873

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.13  E-value=1.6e-06  Score=64.37  Aligned_cols=33  Identities=45%  Similarity=0.993  Sum_probs=20.6

Q ss_pred             cCCCC-CCCCCCceec---CCCceeCCCCcccCCCCc
Q psy9568          82 FSKCI-IPCLNGGRCK---GVNKCRCPPGFLGDYCEI  114 (248)
Q Consensus        82 ~~~C~-~~C~~~g~C~---~~~~C~C~~g~~g~~C~~  114 (248)
                      +++|. .+|.++|+|+   +.|.|.|++||+|..|+.
T Consensus        47 id~C~~~pC~n~g~C~~~~g~y~C~C~~G~~G~~C~~   83 (142)
T 2c4f_L           47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET   83 (142)
T ss_dssp             CCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTSCE
T ss_pred             cCcCcCCCcCCCCEEeCCCCCEEeeCCCCccCCcccc
Confidence            34444 5666666775   346677777777776664

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.12  E-value=1.4e-06  Score=53.45  Aligned_cols=31  Identities=23%  Similarity=0.553  Sum_probs=20.5

Q ss_pred             CCCCCC-Ccc-----C---CCCeeecCCCCccCCCCCCCC
Q psy9568         160 PKPCKQ-GVC-----S---AARTCACYEGWFGRTCSQRSD  190 (248)
Q Consensus       160 ~~~C~~-g~C-----~---~~~~C~C~~g~~G~~C~~~~~  190 (248)
                      .++|.| |+|     +   +.|+|.|++||+|..|+..+.
T Consensus        13 s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~v~   52 (55)
T 3u7u_G           13 KTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNYVM   52 (55)
T ss_dssp             TTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEECC
T ss_pred             CCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCccCc
Confidence            566665 666     2   467777777777777776544

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=98.09  E-value=7.7e-07  Score=69.47  Aligned_cols=75  Identities=31%  Similarity=0.719  Sum_probs=16.9

Q ss_pred             CccCCCCcCCCC-CCCCCCceec---CCCceeCCCCcccCCCCccC-CCCCCCCCCCCCCCceee---CCCeeeCCCCCC
Q psy9568          75 FYGLRCEFSKCI-IPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQ-RPYISKCIIPCLNGGRCK---GVNKCRCPPGFL  146 (248)
Q Consensus        75 ~~G~~C~~~~C~-~~C~~~g~C~---~~~~C~C~~g~~g~~C~~~~-~~~~~~c~~~C~~~g~C~---~~~~C~C~~g~~  146 (248)
                      |++...+++.|. .+|.++|+|+   +.|.|.|++||+|..|+... ..+... ..+|.+  .|+   +.|.|.|.+||+
T Consensus        35 fw~~c~dideC~~~pC~ngg~C~n~~g~y~C~C~~Gf~G~~Ce~~i~deC~~~-~~~C~~--~C~n~~gsy~C~C~~Gy~  111 (195)
T 1nfu_B           35 FWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLD-NGDCDQ--FCHEEQNSVVCSCARGYT  111 (195)
T ss_dssp             ----------------------------------------------CCGGGTG-GGGCSS--EEEEETTEEEEECCTTEE
T ss_pred             ccccCCCCcccCCCCCCCCCEeECCCCCeeEeCCCCceeccccccccccccCC-CCCCCC--EeECCCCCeEEECCCCce
Confidence            333333455665 5677777776   45778888888888776532 222110 023443  565   446777888877


Q ss_pred             ----CCCCCc
Q psy9568         147 ----GDYCEI  152 (248)
Q Consensus       147 ----g~~C~~  152 (248)
                          |..|+.
T Consensus       112 l~~dG~~C~~  121 (195)
T 1nfu_B          112 LADNGKACIP  121 (195)
T ss_dssp             ECTTSSCEEE
T ss_pred             eCCCCCcccc
Confidence                666654

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=98.09  E-value=1.9e-06  Score=64.29  Aligned_cols=58  Identities=36%  Similarity=0.854  Sum_probs=32.8

Q ss_pred             CCCCCCCeecC---CCceeeCCCCccCCCCc-CCCC---CCCCCCcee-c---CCCceeCCCCcc----cCCCCc
Q psy9568          55 EKCLNGGKCVQ---KDTCECQKGFYGLRCEF-SKCI---IPCLNGGRC-K---GVNKCRCPPGFL----GDYCEI  114 (248)
Q Consensus        55 ~~C~~~g~C~~---~~~C~C~~g~~G~~C~~-~~C~---~~C~~~g~C-~---~~~~C~C~~g~~----g~~C~~  114 (248)
                      .+|.++|+|++   .+.|.|++||.|..|+. ++|.   .+|.+  .| +   +.|.|.|++||.    |..|+.
T Consensus        54 ~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~deC~~~~~~C~~--~C~~n~~g~y~C~C~~Gy~l~~dG~~C~~  126 (146)
T 1x7a_L           54 NPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQ--FCKTGADSKVLCSCTTGYRLAPDQKSCKP  126 (146)
T ss_dssp             CSSCTTCEEEECSSCEEEECCSSEESTTTCEECCTTSGGGSCSS--BCCCCSSSCCCCBCCTTEEECTTSSSEEE
T ss_pred             CCCCCCCEeECCCCCEEEecCCCCcCCcCCCCccccCCCCCCcC--CCCCCCCCCEEeEcCCCcEeCCCCCcCCC
Confidence            34555556654   34566666666666642 3443   12333  45 3   457788888887    666664

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=98.08  E-value=9.7e-07  Score=68.88  Aligned_cols=63  Identities=35%  Similarity=0.788  Sum_probs=21.0

Q ss_pred             cCCCC-CCCCCCCeecC---CCceeeCCCCccCCCCc---CCCC---CCCCCCceec---CCCceeCCCCcc----cCCC
Q psy9568          50 FCICT-EKCLNGGKCVQ---KDTCECQKGFYGLRCEF---SKCI---IPCLNGGRCK---GVNKCRCPPGFL----GDYC  112 (248)
Q Consensus        50 ~~~c~-~~C~~~g~C~~---~~~C~C~~g~~G~~C~~---~~C~---~~C~~~g~C~---~~~~C~C~~g~~----g~~C  112 (248)
                      +..|. .+|.++|+|++   .|.|.|++||.|..|+.   +.|.   .+|.+  .|.   +.|.|.|++||.    |..|
T Consensus        42 ideC~~~pC~ngg~C~n~~g~y~C~C~~Gf~G~~Ce~~i~deC~~~~~~C~~--~C~n~~gsy~C~C~~Gy~l~~dG~~C  119 (195)
T 1nfu_B           42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLADNGKAC  119 (195)
T ss_dssp             ---------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEEECTTSSCE
T ss_pred             CcccCCCCCCCCCEeECCCCCeeEeCCCCceeccccccccccccCCCCCCCC--EeECCCCCeEEECCCCceeCCCCCcc
Confidence            33443 56777788876   56788888888888863   4565   24554  676   568899999998    7777


Q ss_pred             Cc
Q psy9568         113 EI  114 (248)
Q Consensus       113 ~~  114 (248)
                      +.
T Consensus       120 ~~  121 (195)
T 1nfu_B          120 IP  121 (195)
T ss_dssp             EE
T ss_pred             cc
Confidence            65

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=98.07  E-value=2.2e-06  Score=58.06  Aligned_cols=61  Identities=34%  Similarity=0.726  Sum_probs=42.1

Q ss_pred             CCCCceee---CCCeeeCCCCCC----CCCCCcCCCCCCC-CCCCCCCccC---CCCeeecCCCCccCCCCCCCCCCC
Q psy9568         127 CLNGGRCK---GVNKCRCPPGFL----GDYCEIWQRPYIC-PKPCKQGVCS---AARTCACYEGWFGRTCSQRSDSGE  193 (248)
Q Consensus       127 C~~~g~C~---~~~~C~C~~g~~----g~~C~~~~~~~~c-~~~C~~g~C~---~~~~C~C~~g~~G~~C~~~~~~~~  193 (248)
                      | +++.|+   +.|+|.|++||+    |..|+   ++++| ..+|. ++|+   ++|+|.|+ ||.|..++.+...|.
T Consensus        13 C-~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~---dideC~~~~C~-~~C~n~~g~y~C~C~-g~~G~~~~~~~~~C~   84 (87)
T 1z6c_A           13 C-GTAVCKNIPGDFECECPEGYRYNLKSKSCE---DIDECSENMCA-QLCVNYPGGYTCYCD-GKKGFKLAQDQKSCE   84 (87)
T ss_dssp             B-TTSSCCCBTTBCCCSSSTTCEEETTTTEEE---CCCHHHHSCCS-SEECCCSSSCCEECC-SSSCCBCCTTSSSCB
T ss_pred             C-CCCEeECCCCCEEEECCCCceECCCCCcCC---CcCeeCCCCCC-CEEEccCCCEEEECC-CCcCCcccCCCCcce
Confidence            5 556665   457888888887    66674   24455 45665 6676   68999998 888888776655554

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=98.05  E-value=2.7e-06  Score=56.94  Aligned_cols=25  Identities=36%  Similarity=1.027  Sum_probs=13.4

Q ss_pred             CCCCCCEeecC---CceeeCCCCc--CCCCC
Q psy9568          24 KCLNGGKCVQK---DTCECQKGFY--GLRCE   49 (248)
Q Consensus        24 ~C~~~g~C~~~---~~C~C~~G~~--G~~C~   49 (248)
                      +|.+ |.|++.   |.|.|++||+  |..|.
T Consensus        13 ~C~~-g~C~n~~g~y~C~C~~Gy~~~g~~C~   42 (82)
T 1emn_A           13 VCKH-GQCINTDGSYRCECPFGYILAGNECV   42 (82)
T ss_dssp             SCSS-SEECCCSSCCCEECCTTEEEETTEEE
T ss_pred             CcCC-CEEEecCCCEEEECCCCeECCCCccC
Confidence            5543 566542   4566666665  55553

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.00  E-value=3e-06  Score=62.91  Aligned_cols=60  Identities=37%  Similarity=0.809  Sum_probs=37.5

Q ss_pred             CCCCCCCeecC---CCceeeCCCCccCCCCc--CCCC-CCCCCCc---eec---C-CCceeCCCCcc----cCCCCc
Q psy9568          55 EKCLNGGKCVQ---KDTCECQKGFYGLRCEF--SKCI-IPCLNGG---RCK---G-VNKCRCPPGFL----GDYCEI  114 (248)
Q Consensus        55 ~~C~~~g~C~~---~~~C~C~~g~~G~~C~~--~~C~-~~C~~~g---~C~---~-~~~C~C~~g~~----g~~C~~  114 (248)
                      .+|.++|+|++   .+.|.|++||.|..|+.  +.|. .++.+++   .|+   + .|.|.|++||.    |..|+.
T Consensus        53 ~pC~n~g~C~~~~g~y~C~C~~G~~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~~  129 (142)
T 2c4f_L           53 SPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP  129 (142)
T ss_dssp             CCCCTTCEEEEETTEEEEECCTTEESTTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEECTTSSCEEE
T ss_pred             CCcCCCCEEeCCCCCEEeeCCCCccCCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCceECCCCCCCCC
Confidence            45666677765   35677777777777763  3332 2233333   565   4 67888888888    666654

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=97.96  E-value=8e-07  Score=65.36  Aligned_cols=59  Identities=41%  Similarity=1.102  Sum_probs=16.0

Q ss_pred             CCCCCceee---CCCeeeCCCCCCCCCCCcCCCCCCC---CCCCCCCccC---CCCeeecCCCCc----cCCCC
Q psy9568         126 PCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYIC---PKPCKQGVCS---AARTCACYEGWF----GRTCS  186 (248)
Q Consensus       126 ~C~~~g~C~---~~~~C~C~~g~~g~~C~~~~~~~~c---~~~C~~g~C~---~~~~C~C~~g~~----G~~C~  186 (248)
                      +|.++|.|+   +.|.|.|++||+|..|+..++ +.|   +.+|.+ +|+   ++|.|.|++||+    |..|+
T Consensus        49 pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~i~-d~C~~~~~~C~~-~C~~~~g~y~C~C~~Gy~l~~~g~~C~  120 (134)
T 2vh0_B           49 PCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTR-KLCSLDNGDCDQ-FCHEEQNSVVCSCARGYTLADNGKACI  120 (134)
T ss_dssp             --------------------------------C-CGGGTGGGGCSS-EEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             CCCCcCCcccCCCCEEeeCCCCccCCccccCCC-CccccCCCCCCC-EeECCCCCEEEECCCCcEECCCCCccC
Confidence            555656665   345666666666666654220 122   123333 444   567777877877    66664

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=97.93  E-value=2.1e-06  Score=63.04  Aligned_cols=69  Identities=32%  Similarity=0.758  Sum_probs=17.3

Q ss_pred             CcCCCC-CCCCCCceec---CCCceeCCCCcccCCCCccC-CCCCCCCCCCCCCCceee---CCCeeeCCCCCC----CC
Q psy9568          81 EFSKCI-IPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQ-RPYISKCIIPCLNGGRCK---GVNKCRCPPGFL----GD  148 (248)
Q Consensus        81 ~~~~C~-~~C~~~g~C~---~~~~C~C~~g~~g~~C~~~~-~~~~~~c~~~C~~~g~C~---~~~~C~C~~g~~----g~  148 (248)
                      +++.|. .+|.++|+|+   +.|.|.|++||+|..|+... +.+... ..+|.+  .|+   +.|.|.|.+||+    |.
T Consensus        41 d~d~C~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~i~d~C~~~-~~~C~~--~C~~~~g~y~C~C~~Gy~l~~~g~  117 (134)
T 2vh0_B           41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLD-NGDCDQ--FCHEEQNSVVCSCARGYTLADNGK  117 (134)
T ss_dssp             ----------------------------------------CCGGGTG-GGGCSS--EEEEETTEEEEECCTTEEECTTSS
T ss_pred             CcCcCCCCCCCCcCCcccCCCCEEeeCCCCccCCccccCCCCccccC-CCCCCC--EeECCCCCEEEECCCCcEECCCCC
Confidence            345554 5677777776   35778888888877776532 212110 023433  565   446788888887    66


Q ss_pred             CCCc
Q psy9568         149 YCEI  152 (248)
Q Consensus       149 ~C~~  152 (248)
                      .|+.
T Consensus       118 ~C~~  121 (134)
T 2vh0_B          118 ACIP  121 (134)
T ss_dssp             CEEE
T ss_pred             ccCc
Confidence            6654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.87  E-value=0.00077  Score=62.67  Aligned_cols=147  Identities=26%  Similarity=0.649  Sum_probs=83.5

Q ss_pred             CCCCCCEeecC-Cce----eeCCCCcCCCCCcCCCCC---CCCCCCeecC-CCcee----eCCCCccCCCCc-CCCC---
Q psy9568          24 KCLNGGKCVQK-DTC----ECQKGFYGLRCEFCICTE---KCLNGGKCVQ-KDTCE----CQKGFYGLRCEF-SKCI---   86 (248)
Q Consensus        24 ~C~~~g~C~~~-~~C----~C~~G~~G~~C~~~~c~~---~C~~~g~C~~-~~~C~----C~~g~~G~~C~~-~~C~---   86 (248)
                      .|.+ |.|++. ..|    .|..|.-...|....|..   .|. .|.|++ .+.|.    |..|.-...|.. ..|.   
T Consensus       182 ~C~~-g~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~-~g~Ci~~~~~Cdg~~dC~dgsde~~C~~~~~C~~~~  259 (699)
T 1n7d_A          182 HCLS-GECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCS-DGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPN  259 (699)
T ss_dssp             CCSS-SCCCSTTCTTSSSCCSTTSCSSCSCCCCCCCSSEEESS-SSCEEETTCCSSSCCCSSSSCSSSSTTCCCCCCSTT
T ss_pred             ecCC-CceEechhccCCCCCCCCCcccccCCCcccCCCcEecC-CCceeeeecccCCCCCCCCCCccCCCCCCCcccCCC
Confidence            3543 577753 556    677887777776544532   365 367776 34554    667666666642 2342   


Q ss_pred             -CCCCCCceecC-----CCceeCCCCcccCCCCccCCCCCCCCC---CCCCCCceee---CCCeeeCCCCCC---CCCCC
Q psy9568          87 -IPCLNGGRCKG-----VNKCRCPPGFLGDYCEIWQRPYISKCI---IPCLNGGRCK---GVNKCRCPPGFL---GDYCE  151 (248)
Q Consensus        87 -~~C~~~g~C~~-----~~~C~C~~g~~g~~C~~~~~~~~~~c~---~~C~~~g~C~---~~~~C~C~~g~~---g~~C~  151 (248)
                       ..|.+ |.|+.     .+.+.|..+..+...+-.    +++|.   ..|.  ..|.   +.|.|.|++||.   |..|+
T Consensus       260 ~~~C~~-g~Ci~~~~~Cd~~~dC~dgsDe~~~~C~----~~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~~~~~~~C~  332 (699)
T 1n7d_A          260 KFKCHS-GECITLDKVCNMARDCRDWSDEPIKECG----TNECLDNNGGCS--HVCNDLKIGYECLCPDGFQLVAQRRCE  332 (699)
T ss_dssp             CCCCTT-SCCCCSSCCSCSSCCSSSSCSCCCSSCC----CCCTTSSTTTSC--TTCCCCTTCCCCCCCSSSCCCSSSCCC
T ss_pred             ceecCC-CcEeCCcccccccceecCcccccccccc----cccccccccCcC--CCcccCCCCcEEeCCCCeEcCCCCccc
Confidence             34654 55651     134556665543321111    11221   1122  2344   468999999998   56676


Q ss_pred             cCCCCCCC--CCCCCCCccC---CCCeeecCCCCccC
Q psy9568         152 IWQRPYIC--PKPCKQGVCS---AARTCACYEGWFGR  183 (248)
Q Consensus       152 ~~~~~~~c--~~~C~~g~C~---~~~~C~C~~g~~G~  183 (248)
                         ++++|  +.+|. ..|.   ++|+|.|++||++.
T Consensus       333 ---dideC~~~~~C~-~~C~n~~g~y~C~C~~G~~~~  365 (699)
T 1n7d_A          333 ---DIDECQDPDTCS-QLCVNLEGGYKCQCEEGFQLD  365 (699)
T ss_dssp             ---CCCCCSSSSSCT-TTCCBCSSCBCCCCCSSCBCC
T ss_pred             ---CccccCCCCccc-cccccCCCCeeeeeecccccC
Confidence               34555  34453 3555   78999999999964

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.82  E-value=5.6e-06  Score=71.69  Aligned_cols=27  Identities=41%  Similarity=0.691  Sum_probs=17.2

Q ss_pred             CCCCC-CEeec---CCceeeCCCCcCCCCCc
Q psy9568          24 KCLNG-GKCVQ---KDTCECQKGFYGLRCEF   50 (248)
Q Consensus        24 ~C~~~-g~C~~---~~~C~C~~G~~G~~C~~   50 (248)
                      .|+++ +.|..   ++.|.|+.++.|..|+.
T Consensus       298 ~CnGHas~C~~~~g~~~C~C~~~ttG~~CE~  328 (426)
T 3zyj_B          298 KCNLHATVCVYDNSKLTCECEHNTTGPDCGK  328 (426)
T ss_dssp             CCSSSCSCEEEETTEEEECCCTTEESSSSCE
T ss_pred             cCCCchhhcCCCCCCceeeCCCCCcCCCccc
Confidence            45555 35653   14778888888877763

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=97.81  E-value=2.7e-05  Score=65.34  Aligned_cols=63  Identities=32%  Similarity=0.765  Sum_probs=29.6

Q ss_pred             CCCC-CCCCCCceec---CCCceeCCCCcccCCCCccCCCCCCCCCCCCCCCceee---CCCeeeCCCCCCC
Q psy9568          83 SKCI-IPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCK---GVNKCRCPPGFLG  147 (248)
Q Consensus        83 ~~C~-~~C~~~g~C~---~~~~C~C~~g~~g~~C~~~~~~~~~~c~~~C~~~g~C~---~~~~C~C~~g~~g  147 (248)
                      ++|. .||.++|.|.   +.|.|.|++||.|..|+.+.+.+...-..+|.+  .|.   +.|.|.|.+||++
T Consensus         6 ~~C~~~pC~~~g~C~~~~~~~~C~C~~g~~g~~C~~~~~eC~~~~~~~C~~--~C~~~~g~~~C~C~~g~~~   75 (317)
T 3h5c_B            6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESYTCSCAQGYRL   75 (317)
T ss_dssp             CCTTSCCCTTTCCCCCCSSSCCCCCSSSCCSSSSCCCSSSCCTTCTTSCSS--EEECCSSSCEEECCTTEEC
T ss_pred             CcCCCCCCCCCCEeECCCCCeEEECCCCCcCCccccCcccCCCCCCCCCcC--ccccCCCeeEEeccccccc
Confidence            4454 4565555555   235566666666655553333222100124443  454   3345555555554

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=97.80  E-value=1.2e-05  Score=49.22  Aligned_cols=16  Identities=44%  Similarity=1.117  Sum_probs=8.8

Q ss_pred             CeeeCCCCCCCCCCCc
Q psy9568         137 NKCRCPPGFLGDYCEI  152 (248)
Q Consensus       137 ~~C~C~~g~~g~~C~~  152 (248)
                      |.|.|++||+|.+|+.
T Consensus        34 y~C~C~~g~~G~~CE~   49 (55)
T 3u7u_G           34 YLCKCPNEFTGDRCQN   49 (55)
T ss_dssp             EEEEECTTEESTTSCE
T ss_pred             EeEeCCCCCcCCCcCc
Confidence            4555555555555554

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=97.78  E-value=7.8e-06  Score=57.54  Aligned_cols=13  Identities=46%  Similarity=0.879  Sum_probs=0.0

Q ss_pred             CCeeeCCCCCCCC
Q psy9568         136 VNKCRCPPGFLGD  148 (248)
Q Consensus       136 ~~~C~C~~g~~g~  148 (248)
                      +|.|.|++||++.
T Consensus        88 sy~C~C~~Gy~~~  100 (107)
T 2w2n_E           88 GYKCQCEEGFQLD  100 (107)
T ss_dssp             -------------
T ss_pred             CEEEECCCCceEC
Confidence            4555555555543

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=97.77  E-value=3.7e-05  Score=64.50  Aligned_cols=55  Identities=31%  Similarity=0.776  Sum_probs=46.3

Q ss_pred             CCCCCCCeecC---CCceeeCCCCccCCCC--cCCCC----CCCCCCceec---CCCceeCCCCcccCC
Q psy9568          55 EKCLNGGKCVQ---KDTCECQKGFYGLRCE--FSKCI----IPCLNGGRCK---GVNKCRCPPGFLGDY  111 (248)
Q Consensus        55 ~~C~~~g~C~~---~~~C~C~~g~~G~~C~--~~~C~----~~C~~~g~C~---~~~~C~C~~g~~g~~  111 (248)
                      .+|.++|+|.+   .+.|.|++||.|..|+  +++|.    .+|.+  .|.   +.|.|.|.+||.+..
T Consensus        11 ~pC~~~g~C~~~~~~~~C~C~~g~~g~~C~~~~~eC~~~~~~~C~~--~C~~~~g~~~C~C~~g~~~~~   77 (317)
T 3h5c_B           11 QPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESYTCSCAQGYRLGE   77 (317)
T ss_dssp             CCCTTTCCCCCCSSSCCCCCSSSCCSSSSCCCSSSCCTTCTTSCSS--EEECCSSSCEEECCTTEECCT
T ss_pred             CCCCCCCEeECCCCCeEEECCCCCcCCccccCcccCCCCCCCCCcC--ccccCCCeeEEeccccccccc
Confidence            57999999987   5799999999999996  57786    46876  887   568999999999854

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=97.73  E-value=1.3e-05  Score=54.02  Aligned_cols=53  Identities=30%  Similarity=0.726  Sum_probs=34.0

Q ss_pred             CCCCceee---CCCeeeCCCCCC-----CCCCCcCCCCCCC-C--CCCCCCccC---CCCeeecCCCCccC
Q psy9568         127 CLNGGRCK---GVNKCRCPPGFL-----GDYCEIWQRPYIC-P--KPCKQGVCS---AARTCACYEGWFGR  183 (248)
Q Consensus       127 C~~~g~C~---~~~~C~C~~g~~-----g~~C~~~~~~~~c-~--~~C~~g~C~---~~~~C~C~~g~~G~  183 (248)
                      |.+ +.|+   +.|+|.|++||+     |..|+   ++++| .  ..|.+++|+   ++|+|.|++||++.
T Consensus        13 C~~-g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~---dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~   79 (86)
T 1lmj_A           13 CGR-GQCVNTPGDFECKCDEGYESGFMMMKNCM---DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLS   79 (86)
T ss_dssp             TTT-SCEEEETTEEEECCCSSEEECTTTSSSEE---ECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCC
T ss_pred             CCC-CEEECCCCCEEeeCCCCcCccCCCCCccC---CcccccCCCCcCCCCEeEcCCCCEEEECcCCcccC
Confidence            543 4665   446788888876     45554   24455 2  236567776   67888888888874

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=97.73  E-value=9e-06  Score=57.22  Aligned_cols=70  Identities=26%  Similarity=0.560  Sum_probs=25.5

Q ss_pred             CCCCcccCCCCccCCCCCCCCC---CCCCCCceee---CCCeeeCCCCCCC---CCCCcCCCCCCC--CCCCCCCccC--
Q psy9568         103 CPPGFLGDYCEIWQRPYISKCI---IPCLNGGRCK---GVNKCRCPPGFLG---DYCEIWQRPYIC--PKPCKQGVCS--  169 (248)
Q Consensus       103 C~~g~~g~~C~~~~~~~~~~c~---~~C~~~g~C~---~~~~C~C~~g~~g---~~C~~~~~~~~c--~~~C~~g~C~--  169 (248)
                      ...+|.+..|++.      +|.   ..|.  ..|+   +.|.|.|++||+|   ..|+   ++++|  +.+|. +.|+  
T Consensus        18 ~~~~~~~~~Cd~n------eC~~~~~~C~--~~C~n~~g~y~C~C~~Gy~g~~g~~C~---dideC~~~~~C~-~~C~n~   85 (107)
T 2w2n_E           18 TENLYFQGAMGTN------ECLDNNGGCS--YVCNDLKIGYECLCPDGFQLVAQRRCE---DIDECQDPDTCS-QLCVNL   85 (107)
T ss_dssp             --CCCCSCCBSCC------GGGTGGGGCS--SEEECCSBSCEEECCTTCEEETTTEEE---C------------------
T ss_pred             cCCCcCCCCCcCc------cCcCCCCCCC--CEeEeCCCCeEEECCCCccccCCCccc---cccccCCCCCcC-CeeecC
Confidence            3467777777542      221   1232  2565   4689999999998   6676   34566  35665 6776  


Q ss_pred             -CCCeeecCCCCccCC
Q psy9568         170 -AARTCACYEGWFGRT  184 (248)
Q Consensus       170 -~~~~C~C~~g~~G~~  184 (248)
                       ++|.|.|++||++..
T Consensus        86 ~gsy~C~C~~Gy~~~~  101 (107)
T 2w2n_E           86 EGGYKCQCEEGFQLDP  101 (107)
T ss_dssp             ----------------
T ss_pred             CCCEEEECCCCceECC
Confidence             789999999999754

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=97.72  E-value=3e-05  Score=58.75  Aligned_cols=17  Identities=29%  Similarity=0.821  Sum_probs=10.8

Q ss_pred             CCeeeCCCCCCCCCCCc
Q psy9568         136 VNKCRCPPGFLGDYCEI  152 (248)
Q Consensus       136 ~~~C~C~~g~~g~~C~~  152 (248)
                      .++|.|.++|+|..|+.
T Consensus       130 tG~C~C~~g~~G~~Cd~  146 (162)
T 1klo_A          130 TGQCQCLPHVSGRDCGT  146 (162)
T ss_dssp             TCCCCBCTTEESTTCCE
T ss_pred             CCEeECCCCCcCCCCCC
Confidence            35666666666666665

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=97.71  E-value=2.3e-05  Score=44.36  Aligned_cols=27  Identities=33%  Similarity=0.928  Sum_probs=16.9

Q ss_pred             CCCCCC-CccC---CCCeeecCCCCccCCCC
Q psy9568         160 PKPCKQ-GVCS---AARTCACYEGWFGRTCS  186 (248)
Q Consensus       160 ~~~C~~-g~C~---~~~~C~C~~g~~G~~C~  186 (248)
                      ..+|.| |+|+   ++|+|.|++||+|..|+
T Consensus         8 ~~pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce   38 (39)
T 1edm_B            8 SNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             TCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             CCCCCCCCEeEcCCCceEeECCCCCcCCccC
Confidence            455655 5665   45667777777776664

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.66  E-value=1.3e-05  Score=69.43  Aligned_cols=27  Identities=41%  Similarity=1.051  Sum_probs=0.0

Q ss_pred             CCCCCceeeCCCeeeCCCCCCCCCCCc
Q psy9568         126 PCLNGGRCKGVNKCRCPPGFLGDYCEI  152 (248)
Q Consensus       126 ~C~~~g~C~~~~~C~C~~g~~g~~C~~  152 (248)
                      +|.|+|+|....+|.|++||+|..|+.
T Consensus       372 ~C~ngg~C~~~~~C~C~~G~~G~~Ce~  398 (426)
T 3zyj_B          372 HCQNGGTCHNNVRCLCPAAYTGILCEK  398 (426)
T ss_dssp             ---------------------------
T ss_pred             cCCCCCCcCCCCCCcCCCCCcCCCCcC
Confidence            566666666434666666666666553

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=97.60  E-value=4.2e-05  Score=43.23  Aligned_cols=31  Identities=45%  Similarity=1.040  Sum_probs=20.6

Q ss_pred             CCCC-cCCCCCCEeecC---CceeeCCCCcCCCCC
Q psy9568          19 GICT-EKCLNGGKCVQK---DTCECQKGFYGLRCE   49 (248)
Q Consensus        19 ~~C~-~~C~~~g~C~~~---~~C~C~~G~~G~~C~   49 (248)
                      +.|. ++|.++|.|++.   +.|.|++||+|+.|+
T Consensus         4 d~C~~~pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce   38 (39)
T 1edm_B            4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             ccCCCCCCCCCCEeEcCCCceEeECCCCCcCCccC
Confidence            4454 367777777642   567777777777765

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=97.55  E-value=2.6e-05  Score=45.89  Aligned_cols=27  Identities=30%  Similarity=0.791  Sum_probs=20.5

Q ss_pred             CCCCCCccC-----CCCeeecCCCCccCCCCC
Q psy9568         161 KPCKQGVCS-----AARTCACYEGWFGRTCSQ  187 (248)
Q Consensus       161 ~~C~~g~C~-----~~~~C~C~~g~~G~~C~~  187 (248)
                      ++|.||+|.     +.|.|.|++||+|.+|+.
T Consensus        12 ~pC~nG~C~~~~~~~~~~C~C~~GytG~~Ce~   43 (46)
T 1k36_A           12 GYCLHGQCIYLVDMSQNYCRCEVGYTGVRCEH   43 (46)
T ss_dssp             SSCSSEEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred             CCCCCCEeeccCCCCCEEEECCCCCccCCCCc
Confidence            577777775     357888888888888864

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=97.55  E-value=3.6e-05  Score=45.04  Aligned_cols=28  Identities=36%  Similarity=0.794  Sum_probs=18.4

Q ss_pred             CCCC-CccC-----CCCeeecCCCCccCCCCCCC
Q psy9568         162 PCKQ-GVCS-----AARTCACYEGWFGRTCSQRS  189 (248)
Q Consensus       162 ~C~~-g~C~-----~~~~C~C~~g~~G~~C~~~~  189 (248)
                      +|.| |+|.     ++|+|.|++||+|..|+..+
T Consensus        10 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~   43 (45)
T 1a3p_A           10 YCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTRD   43 (45)
T ss_dssp             CCSSSCEEEECTTTSSEEEECCTTEETTTTCEEC
T ss_pred             CCCCCCEEEeecCCCCEEEEcCCCCcCCcCCccc
Confidence            5665 5663     46677777777777776544

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=97.53  E-value=5.1e-06  Score=50.41  Aligned_cols=14  Identities=64%  Similarity=1.521  Sum_probs=6.2

Q ss_pred             ceeeCCCCccCCCC
Q psy9568          68 TCECQKGFYGLRCE   81 (248)
Q Consensus        68 ~C~C~~g~~G~~C~   81 (248)
                      .|.|++||.|.+|+
T Consensus        34 ~C~C~~Gf~G~~Ce   47 (52)
T 3ca7_A           34 SCECAIGFMGQRCE   47 (52)
T ss_dssp             EEECCTTEESTTSC
T ss_pred             EEECCCCCcCCCCc
Confidence            44444444444443

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=97.43  E-value=0.00012  Score=44.46  Aligned_cols=27  Identities=48%  Similarity=1.131  Sum_probs=17.6

Q ss_pred             CCCCCCEee--c---CCceeeCCCCcCCCCCc
Q psy9568          24 KCLNGGKCV--Q---KDTCECQKGFYGLRCEF   50 (248)
Q Consensus        24 ~C~~~g~C~--~---~~~C~C~~G~~G~~C~~   50 (248)
                      +|.++|.|+  +   .+.|.|++||+|..|+.
T Consensus        13 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~   44 (53)
T 1egf_A           13 YCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT   44 (53)
T ss_dssp             SSCSSCEEEEESSSSCEEEECCTTCCSSSSCC
T ss_pred             cCCCCcEEEeeCCCCCEEEECCCCCcCCcCCc
Confidence            577777776  3   25677777777777653

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=97.43  E-value=6.2e-05  Score=50.73  Aligned_cols=18  Identities=28%  Similarity=0.730  Sum_probs=8.8

Q ss_pred             CCCEeecC---CceeeCCCCc
Q psy9568          27 NGGKCVQK---DTCECQKGFY   44 (248)
Q Consensus        27 ~~g~C~~~---~~C~C~~G~~   44 (248)
                      +++.|++.   |.|.|++||+
T Consensus        14 ~~~~C~n~~g~y~C~C~~G~~   34 (87)
T 1z6c_A           14 GTAVCKNIPGDFECECPEGYR   34 (87)
T ss_dssp             TTSSCCCBTTBCCCSSSTTCE
T ss_pred             CCCEeECCCCCEEEECCCCce
Confidence            44555432   4555555555

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=97.39  E-value=7.5e-05  Score=57.07  Aligned_cols=31  Identities=45%  Similarity=1.091  Sum_probs=13.8

Q ss_pred             CCCCCCCCCCCeecCCCceeeCCCCccCCCC
Q psy9568          51 CICTEKCLNGGKCVQKDTCECQKGFYGLRCE   81 (248)
Q Consensus        51 ~~c~~~C~~~g~C~~~~~C~C~~g~~G~~C~   81 (248)
                      .+|..+|.++|.|+...+|.|++||.|..|+
T Consensus       149 ~~C~~~C~ngG~Cv~P~~C~C~~Gw~G~~C~  179 (188)
T 2ygo_A          149 AECPGGCRNGGFCNERRICECPDGFHGPHCE  179 (188)
T ss_dssp             CCCTTCCCTTCEECTTSCEECCTTCBTTTTC
T ss_pred             CccCCCCCCCCEeCCCCcccCcCCCCCCCCc
Confidence            3344444444444444444444444444443

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=97.38  E-value=1.5e-05  Score=48.32  Aligned_cols=14  Identities=50%  Similarity=1.388  Sum_probs=7.0

Q ss_pred             ceeCCCCcccCCCC
Q psy9568         100 KCRCPPGFLGDYCE  113 (248)
Q Consensus       100 ~C~C~~g~~g~~C~  113 (248)
                      .|.|++||+|..|+
T Consensus        34 ~C~C~~Gf~G~~Ce   47 (52)
T 3ca7_A           34 SCECAIGFMGQRCE   47 (52)
T ss_dssp             EEECCTTEESTTSC
T ss_pred             EEECCCCCcCCCCc
Confidence            45555555555444

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=97.38  E-value=9.5e-05  Score=49.67  Aligned_cols=53  Identities=38%  Similarity=0.943  Sum_probs=32.7

Q ss_pred             CCCCceec---CCCceeCCCCcc-----cCCCCccCCCCCCCCC-C--CCCCCceee---CCCeeeCCCCCCCC
Q psy9568          89 CLNGGRCK---GVNKCRCPPGFL-----GDYCEIWQRPYISKCI-I--PCLNGGRCK---GVNKCRCPPGFLGD  148 (248)
Q Consensus        89 C~~~g~C~---~~~~C~C~~g~~-----g~~C~~~~~~~~~~c~-~--~C~~~g~C~---~~~~C~C~~g~~g~  148 (248)
                      |.+ +.|+   +.|.|.|++||.     |..|+.     +++|. .  .|. ++.|+   ++|+|.|++||++.
T Consensus        13 C~~-g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~d-----ideC~~~~~~C~-~~~C~n~~g~y~C~C~~G~~~~   79 (86)
T 1lmj_A           13 CGR-GQCVNTPGDFECKCDEGYESGFMMMKNCMD-----IDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLS   79 (86)
T ss_dssp             TTT-SCEEEETTEEEECCCSSEEECTTTSSSEEE-----CCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCCC
T ss_pred             CCC-CEEECCCCCEEeeCCCCcCccCCCCCccCC-----cccccCCCCcCC-CCEeEcCCCCEEEECcCCcccC
Confidence            643 3665   457788888887     445542     22332 2  254 46776   55788999988775

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=97.37  E-value=9.7e-05  Score=56.48  Aligned_cols=38  Identities=39%  Similarity=0.836  Sum_probs=31.1

Q ss_pred             cCCCCcCCCCCCCCCCceecCCCceeCCCCcccCCCCc
Q psy9568          77 GLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEI  114 (248)
Q Consensus        77 G~~C~~~~C~~~C~~~g~C~~~~~C~C~~g~~g~~C~~  114 (248)
                      ...|..+.|..+|.|+|.|+++..|.|++||.|..|+.
T Consensus       143 ~K~C~~~~C~~~C~ngG~Cv~P~~C~C~~Gw~G~~C~~  180 (188)
T 2ygo_A          143 FKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEG  180 (188)
T ss_dssp             EEEECCCCCTTCCCTTCEECTTSCEECCTTCBTTTTCB
T ss_pred             cccccCCccCCCCCCCCEeCCCCcccCcCCCCCCCCcC
Confidence            44566677888899999999888999999999988875

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=97.32  E-value=0.00015  Score=43.94  Aligned_cols=29  Identities=38%  Similarity=0.855  Sum_probs=17.9

Q ss_pred             CCCC-CccC-----CCCeeecCCCCccCCCCCCCC
Q psy9568         162 PCKQ-GVCS-----AARTCACYEGWFGRTCSQRSD  190 (248)
Q Consensus       162 ~C~~-g~C~-----~~~~C~C~~g~~G~~C~~~~~  190 (248)
                      +|.| |+|+     ++|.|.|++||+|..|+..+.
T Consensus        13 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~~   47 (53)
T 1egf_A           13 YCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRDL   47 (53)
T ss_dssp             SSCSSCEEEEESSSSCEEEECCTTCCSSSSCCCSC
T ss_pred             cCCCCcEEEeeCCCCCEEEECCCCCcCCcCCccCc
Confidence            5655 5564     456677777777777765443

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=97.26  E-value=0.00021  Score=41.69  Aligned_cols=15  Identities=40%  Similarity=1.108  Sum_probs=6.4

Q ss_pred             CceeCCCCcccCCCC
Q psy9568          99 NKCRCPPGFLGDYCE  113 (248)
Q Consensus        99 ~~C~C~~g~~g~~C~  113 (248)
                      |.|.|++||+|..|+
T Consensus        26 ~~C~C~~G~~G~~Ce   40 (45)
T 1a3p_A           26 YTCNCVIGYSGDRCQ   40 (45)
T ss_dssp             EEEECCTTEETTTTC
T ss_pred             EEEEcCCCCcCCcCC
Confidence            344444444444443

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=97.18  E-value=0.00016  Score=45.47  Aligned_cols=23  Identities=22%  Similarity=0.572  Sum_probs=17.3

Q ss_pred             CCeeecCCCCccCCCCCCCCCCC
Q psy9568         171 ARTCACYEGWFGRTCSQRSDSGE  193 (248)
Q Consensus       171 ~~~C~C~~g~~G~~C~~~~~~~~  193 (248)
                      .|.|.|++||+|..|+..++++.
T Consensus        31 ~y~C~C~~Gf~G~~Ce~~i~~~~   53 (63)
T 1hae_A           31 RYLCKCQPGFTGARCTENVPMKV   53 (63)
T ss_dssp             CEEEECCTTEESTTSCEECCSSC
T ss_pred             CEEEECCCCCcCCccCcCcCccc
Confidence            57788888888888877666654

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=97.08  E-value=0.00025  Score=41.58  Aligned_cols=26  Identities=42%  Similarity=1.263  Sum_probs=15.9

Q ss_pred             CCCCCCEeec-----CCceeeCCCCcCCCCCc
Q psy9568          24 KCLNGGKCVQ-----KDTCECQKGFYGLRCEF   50 (248)
Q Consensus        24 ~C~~~g~C~~-----~~~C~C~~G~~G~~C~~   50 (248)
                      +|.+ |.|+.     .+.|.|++||+|.+|+.
T Consensus        13 pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~   43 (46)
T 1k36_A           13 YCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEH   43 (46)
T ss_dssp             SCSS-EEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred             CCCC-CEeeccCCCCCEEEECCCCCccCCCCc
Confidence            5666 66652     24666666666666653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.05  E-value=0.0008  Score=63.38  Aligned_cols=129  Identities=25%  Similarity=0.613  Sum_probs=48.8

Q ss_pred             eeCCCCcCCCCCcCCCC---CCCCCCCeecC-CCce----eeCCCCccCCCCc-CCCC----CCCCCCceecC-----CC
Q psy9568          38 ECQKGFYGLRCEFCICT---EKCLNGGKCVQ-KDTC----ECQKGFYGLRCEF-SKCI----IPCLNGGRCKG-----VN   99 (248)
Q Consensus        38 ~C~~G~~G~~C~~~~c~---~~C~~~g~C~~-~~~C----~C~~g~~G~~C~~-~~C~----~~C~~~g~C~~-----~~   99 (248)
                      .|..|.-...|....|.   ..|.+ +.|+. ...|    .|..|+-+..|.. ..|.    .+|.+ |.|+.     .+
T Consensus       218 dC~dgsDE~~C~~~~C~~~~f~C~~-g~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~~C~~~~~~~C~~-G~Ci~~~~~Cd~  295 (791)
T 3m0c_C          218 DCKDKSDEENCAVATCRPDEFQCSD-GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHS-GECITLDKVCNM  295 (791)
T ss_dssp             --------------------------------------------------------CCSTTCCCCTT-SCCCCSSCCSCS
T ss_pred             CCCCCCCCCCccccccCCCcceecC-CceEecceecCChhccccccccCcccccccccCCCccccCC-CcccccccccCC
Confidence            45555544455432232   13533 45654 2233    4666665656642 2332    34655 56652     13


Q ss_pred             ceeCCCCcccCC--CCccCCCCCCCCCCCCCCC-----ceee---CCCeeeCCCCCC---CCCCCcCCCCCCCC--CCCC
Q psy9568         100 KCRCPPGFLGDY--CEIWQRPYISKCIIPCLNG-----GRCK---GVNKCRCPPGFL---GDYCEIWQRPYICP--KPCK  164 (248)
Q Consensus       100 ~C~C~~g~~g~~--C~~~~~~~~~~c~~~C~~~-----g~C~---~~~~C~C~~g~~---g~~C~~~~~~~~c~--~~C~  164 (248)
                      .+.|..|+-...  |..          .+|..+     ..|+   +.|.|.|++||.   |..|+.   +++|.  ..|.
T Consensus       296 ~~dC~dgsDe~~~~C~~----------~~C~~~~~~C~~~C~~~~~~y~C~C~~Gy~l~~g~~C~d---ideC~~~~~C~  362 (791)
T 3m0c_C          296 ARDCRDWSDEPIKECGT----------NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED---IDECQDPDTCS  362 (791)
T ss_dssp             SCCSSSSCSCCCTTBSC----------CSTTTGGGGCSSEEEECSBSEEEECCTTCEEETTTEEEC---CCCCSSSSSCT
T ss_pred             ccccccccCcccccccc----------ccccccccCccccccCCCCCcccCCCCCCccCCCCcccc---CcccCCCCCCC
Confidence            445666654432  221          233322     2565   468999999995   667763   45553  3343


Q ss_pred             CCccC---CCCeeecCCCCcc
Q psy9568         165 QGVCS---AARTCACYEGWFG  182 (248)
Q Consensus       165 ~g~C~---~~~~C~C~~g~~G  182 (248)
                       ..|.   ++|.|.|++||.+
T Consensus       363 -~~C~n~~gsy~C~C~~Gy~l  382 (791)
T 3m0c_C          363 -QLCVNLEGGYKCQCEEGFQL  382 (791)
T ss_dssp             -TTCCBCSSCBCCCCCSSEEC
T ss_pred             -CeeecCCCCceeecCCCCEe
Confidence             3555   7899999999985

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=96.98  E-value=0.00026  Score=44.52  Aligned_cols=28  Identities=46%  Similarity=1.105  Sum_probs=21.6

Q ss_pred             cCCCCCCEeec--------CCceeeCCCCcCCCCCc
Q psy9568          23 EKCLNGGKCVQ--------KDTCECQKGFYGLRCEF   50 (248)
Q Consensus        23 ~~C~~~g~C~~--------~~~C~C~~G~~G~~C~~   50 (248)
                      ++|.++|.|++        .+.|.|++||+|..|+.
T Consensus        12 ~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~   47 (63)
T 1hae_A           12 TFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTE   47 (63)
T ss_dssp             TTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCE
T ss_pred             CcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCc
Confidence            37888888873        35788888888888863

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=96.93  E-value=9.6e-05  Score=46.16  Aligned_cols=35  Identities=23%  Similarity=0.585  Sum_probs=24.4

Q ss_pred             eccCCCCc-CCCCC--CEeecC---CceeeCCCCc-CCCCCc
Q psy9568          16 FVSGICTE-KCLNG--GKCVQK---DTCECQKGFY-GLRCEF   50 (248)
Q Consensus        16 ~~~~~C~~-~C~~~--g~C~~~---~~C~C~~G~~-G~~C~~   50 (248)
                      ...+.|.. +|.++  |.|++.   |.|.|++||+ |..|+.
T Consensus         9 ~~~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~~C~~   50 (61)
T 2k2s_B            9 ETPAACSSNPCGPEAAGTCKETNSGYICRCNQGYRISLDGTG   50 (61)
T ss_dssp             TSCCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEEEECSSS
T ss_pred             CCCCcCcCCCCcCCCccccccCCCceEeECCCCCccCCCCCC
Confidence            34455644 78877  788753   5788888888 887763

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=96.82  E-value=0.0004  Score=42.05  Aligned_cols=29  Identities=38%  Similarity=1.069  Sum_probs=21.6

Q ss_pred             CcCCCCCCEee--c---CCceeeCCCCcCCCCCc
Q psy9568          22 TEKCLNGGKCV--Q---KDTCECQKGFYGLRCEF   50 (248)
Q Consensus        22 ~~~C~~~g~C~--~---~~~C~C~~G~~G~~C~~   50 (248)
                      .++|.++|+|+  +   .+.|.|++||+|..|+.
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~   44 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY   44 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCc
Confidence            35688888886  3   25788888888888874

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=96.73  E-value=0.00027  Score=42.80  Aligned_cols=28  Identities=36%  Similarity=0.922  Sum_probs=16.7

Q ss_pred             CCCCC-CccC-----CCCeeecCCCCccCCCCCC
Q psy9568         161 KPCKQ-GVCS-----AARTCACYEGWFGRTCSQR  188 (248)
Q Consensus       161 ~~C~~-g~C~-----~~~~C~C~~g~~G~~C~~~  188 (248)
                      .+|.| |+|.     +.|.|.|++||+|..|+..
T Consensus        12 ~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~~   45 (53)
T 1nql_B           12 GYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR   45 (53)
T ss_dssp             CEECTTCEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred             CCCCCCeEEeeecCCCCEEEecCCCCcCCCCCcC
Confidence            45555 5553     3466777777777777643

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=96.68  E-value=0.00023  Score=44.39  Aligned_cols=31  Identities=23%  Similarity=0.693  Sum_probs=22.0

Q ss_pred             CCC-CCCCCCC---ccC---CCCeeecCCCCc-cCCCCC
Q psy9568         157 YIC-PKPCKQG---VCS---AARTCACYEGWF-GRTCSQ  187 (248)
Q Consensus       157 ~~c-~~~C~~g---~C~---~~~~C~C~~g~~-G~~C~~  187 (248)
                      +.| ++||.||   +|+   ++|.|.|++||+ |..|+.
T Consensus        12 d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~~C~~   50 (61)
T 2k2s_B           12 AACSSNPCGPEAAGTCKETNSGYICRCNQGYRISLDGTG   50 (61)
T ss_dssp             CHHHHCSSCSSSCCEEEECSSEEEEECCTTEEEEECSSS
T ss_pred             CcCcCCCCcCCCccccccCCCceEeECCCCCccCCCCCC
Confidence            345 5677663   776   667888888888 888853

>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*

Probab=96.66  E-value=0.0018  Score=53.12  Aligned_cols=56  Identities=32%  Similarity=0.776  Sum_probs=38.7

Q ss_pred             CCCCCeecCCCceeeCCCCccCCCCcC-----------CCCC-----CCCCCceecCCCceeCCCCc------ccCCCCc
Q psy9568          57 CLNGGKCVQKDTCECQKGFYGLRCEFS-----------KCII-----PCLNGGRCKGVNKCRCPPGF------LGDYCEI  114 (248)
Q Consensus        57 C~~~g~C~~~~~C~C~~g~~G~~C~~~-----------~C~~-----~C~~~g~C~~~~~C~C~~g~------~g~~C~~  114 (248)
                      |.++|.|.- +.|.|.+||.|..|+.+           .|..     .|.++|.|+- ++|.|..+|      .|..|+.
T Consensus       198 C~g~G~~~C-G~C~C~~g~~G~~CeC~~~~~~~~~~~~~C~~~~~~~~CSgrG~C~C-G~C~C~~~~~~~~~~~G~~~~~  275 (280)
T 2p26_A          198 CHGKGFLEC-GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC-GQCLCHTSDVPGKLIYGQYCEH  275 (280)
T ss_dssp             GGGSEEEET-TEEEECTTEESTTSCEECTTSCHHHHHHTTCSSTTSCGGGGSEEEET-TEEEECCCSSTTCEEESTTSCE
T ss_pred             cCCCCeECC-CceeCCCCCcCCcceecCCccccccccccCCCCCCCCccCCCceEeC-CeeECcCCCCCCeeEeeEeccc
Confidence            777777775 78888888888888621           4641     3777788874 688887765      4566654

>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*

Probab=96.65  E-value=0.00029  Score=64.52  Aligned_cols=49  Identities=24%  Similarity=0.466  Sum_probs=41.7

Q ss_pred             eeeCCCCcCCCCC-cCCCCCCCCCCCeecCCCceeeCCCCccCCCCcCCCC
Q psy9568          37 CECQKGFYGLRCE-FCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCI   86 (248)
Q Consensus        37 C~C~~G~~G~~C~-~~~c~~~C~~~g~C~~~~~C~C~~g~~G~~C~~~~C~   86 (248)
                      -.|.+||.|++|. ...|...|.+||.|++ +.|.|.+||.|..|....+.
T Consensus       520 ~~C~~gw~g~dc~i~~~Cp~~C~ghG~C~~-G~C~Cd~G~~G~~C~~~~~~  569 (725)
T 2e26_A          520 FDKQQTWAIDNVYIGDGCLDMCSGHGRCVQ-GSCVCDEQWGGLYCDEPETS  569 (725)
T ss_dssp             CCTTCCEEEEEEEEESCSSGGGGGSEEEET-TEEEECTTEESTTSCEESSC
T ss_pred             CccCCCcccccccccCCCCcccCCCcEECC-CCEeeCCCccCCCcCccCCC
Confidence            4789999999998 4668889999999997 89999999999999865443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.57  E-value=0.094  Score=48.61  Aligned_cols=118  Identities=22%  Similarity=0.448  Sum_probs=58.6

Q ss_pred             eeCCCCccCCCCcCCCC---CCCCCCceec-CCCcee----CCCCcccCCCCccCCCCCCCCCCCCCCCceeeCC-----
Q psy9568          70 ECQKGFYGLRCEFSKCI---IPCLNGGRCK-GVNKCR----CPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGV-----  136 (248)
Q Consensus        70 ~C~~g~~G~~C~~~~C~---~~C~~~g~C~-~~~~C~----C~~g~~g~~C~~~~~~~~~~c~~~C~~~g~C~~~-----  136 (248)
                      .|..|.-...|....|.   ..|.+ |.|+ ..+.|.    |..|.-...|.... .+...-...|.+ |.|+..     
T Consensus       200 dC~dgsDE~~C~~~~C~~~~f~C~~-g~Ci~~~~~Cdg~~dC~dgsde~~C~~~~-~C~~~~~~~C~~-g~Ci~~~~~Cd  276 (699)
T 1n7d_A          200 DCKDKSDEENCAVATCRPDEFQCSD-GNCIHGSRQCDREYDCKDMSDEVGCVNVT-LCEGPNKFKCHS-GECITLDKVCN  276 (699)
T ss_dssp             CSTTSCSSCSCCCCCCCSSEEESSS-SCEEETTCCSSSCCCSSSSCSSSSTTCCC-CCCSTTCCCCTT-SCCCCSSCCSC
T ss_pred             CCCCCcccccCCCcccCCCcEecCC-CceeeeecccCCCCCCCCCCccCCCCCCC-cccCCCceecCC-CcEeCCccccc
Confidence            45555544555443443   23553 4565 334554    66665555554210 110001134544 556521     


Q ss_pred             CeeeCCCCCCCCCCCcCCCCCCCC---CCCCCCccC---CCCeeecCCCCc---cCCCCCCCCCCCC
Q psy9568         137 NKCRCPPGFLGDYCEIWQRPYICP---KPCKQGVCS---AARTCACYEGWF---GRTCSQRSDSGED  194 (248)
Q Consensus       137 ~~C~C~~g~~g~~C~~~~~~~~c~---~~C~~g~C~---~~~~C~C~~g~~---G~~C~~~~~~~~~  194 (248)
                      +.+.|..++.+...+.  +..+|.   ..|. ..|.   ++|.|.|++||+   |..|+ ++++|..
T Consensus       277 ~~~dC~dgsDe~~~~C--~~~eC~~~~~~C~-~~C~~~~~~~~C~C~~G~~~~~~~~C~-dideC~~  339 (699)
T 1n7d_A          277 MARDCRDWSDEPIKEC--GTNECLDNNGGCS-HVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQD  339 (699)
T ss_dssp             SSCCSSSSCSCCCSSC--CCCCTTSSTTTSC-TTCCCCTTCCCCCCCSSSCCCSSSCCC-CCCCCSS
T ss_pred             ccceecCccccccccc--ccccccccccCcC-CCcccCCCCcEEeCCCCeEcCCCCccc-CccccCC
Confidence            3455666654432111  122331   1121 2444   689999999999   77886 7788763

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.55  E-value=0.0024  Score=55.25  Aligned_cols=49  Identities=35%  Similarity=0.768  Sum_probs=30.2

Q ss_pred             ceee---CCCeeeCCCCCC---CCCCCcCCCCCCC--CCCCCCCccC---CCCeeecCCCCccC
Q psy9568         131 GRCK---GVNKCRCPPGFL---GDYCEIWQRPYIC--PKPCKQGVCS---AARTCACYEGWFGR  183 (248)
Q Consensus       131 g~C~---~~~~C~C~~g~~---g~~C~~~~~~~~c--~~~C~~g~C~---~~~~C~C~~g~~G~  183 (248)
                      +.|.   +.|.|.|++||+   |..|+.   .++|  +.+|.+ .|.   ++|.|.|.+||++.
T Consensus        12 ~~C~~~~~~y~C~C~~G~~~~~~~~C~d---ideC~~~~~C~~-~C~n~~g~~~C~C~~g~~~~   71 (400)
T 3p5b_L           12 HVCNDLKIGYECLCPDGFQLVAQRRCED---IDECQDPDTCSQ-LCVNLEGGYKCQCEEGFQLD   71 (400)
T ss_dssp             SEEEECSSSEEEECCTTEEECSSSCEEE---CCCCSTTSSCSS-CCBCCSSSCBCCCCTTCCCC
T ss_pred             CEeECCCCCeEEECCCCCCcCCCCcccC---chhhhccCCCCC-ccCCCccceeeecccccccc
Confidence            4555   346777777776   556642   3444  244543 454   67888888888764

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=96.47  E-value=0.0019  Score=46.31  Aligned_cols=56  Identities=36%  Similarity=0.668  Sum_probs=32.6

Q ss_pred             CCCCCceeeC-----CC-eeeCCCCCCCCCCCcCCCCCCCCCCCCCCccCCCCeeecCCCCccCCCCC
Q psy9568         126 PCLNGGRCKG-----VN-KCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTCSQ  187 (248)
Q Consensus       126 ~C~~~g~C~~-----~~-~C~C~~g~~g~~C~~~~~~~~c~~~C~~g~C~~~~~C~C~~g~~G~~C~~  187 (248)
                      +|.|+|+|..     .+ .|.|+++|+|..|++...     ..|.++.- ..|++.+..++.|..|+.
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~~-----~~C~~g~G-~~YrG~~~~t~sG~~Cq~   63 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS-----KTCYEGNG-HFYRGKASTDTMGRPCLP   63 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEESS-----CCSBCSSC-TTCCSCCCBBTTSCBBCC
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCccccccCc-----CCCccccc-ccceeeccccccCCcccC
Confidence            5666677752     12 677777777777776322     23432211 256777777777777753

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=96.37  E-value=0.0049  Score=53.10  Aligned_cols=26  Identities=27%  Similarity=0.708  Sum_probs=16.6

Q ss_pred             CCCCCCE-eec-------CCceeeCCCCcCCCCC
Q psy9568          24 KCLNGGK-CVQ-------KDTCECQKGFYGLRCE   49 (248)
Q Consensus        24 ~C~~~g~-C~~-------~~~C~C~~G~~G~~C~   49 (248)
                      .|++|+. |..       .+.|.|..++.|..|+
T Consensus       267 ~CnGHA~~C~~~~~~~~~~g~C~C~hnT~G~~CE  300 (403)
T 2y38_A          267 VCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCD  300 (403)
T ss_dssp             CCTTBCSCEEESCTTSTTCEEECCCTTEESSSCC
T ss_pred             ccCCCccccCCCCCCCccceEeECcCcCcCCCCC
Confidence            4666664 752       1347777777777776

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=96.31  E-value=0.0011  Score=40.84  Aligned_cols=27  Identities=48%  Similarity=1.185  Sum_probs=21.5

Q ss_pred             CCCCCCEee--c-----CCceeeCCCCcCCCCCc
Q psy9568          24 KCLNGGKCV--Q-----KDTCECQKGFYGLRCEF   50 (248)
Q Consensus        24 ~C~~~g~C~--~-----~~~C~C~~G~~G~~C~~   50 (248)
                      +|.|+|.|+  .     .+.|.|++||+|.+|+.
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~   48 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY   48 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCE
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCcc
Confidence            588999997  2     25799999999998874

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=96.17  E-value=0.0029  Score=45.27  Aligned_cols=55  Identities=33%  Similarity=0.665  Sum_probs=27.0

Q ss_pred             CCCCCCEeecC-----C-ceeeCCCCcCCCCCcCCCCCCCCCCCeecCCCceeeCCCCccCCCC
Q psy9568          24 KCLNGGKCVQK-----D-TCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCE   81 (248)
Q Consensus        24 ~C~~~g~C~~~-----~-~C~C~~G~~G~~C~~~~c~~~C~~~g~C~~~~~C~C~~g~~G~~C~   81 (248)
                      +|.|+|.|++.     + .|.|++||+|..|++... ..|..+ . ...|.+.+..++.|..|+
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~~-~~C~~g-~-G~~YrG~~~~t~sG~~Cq   62 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS-KTCYEG-N-GHFYRGKASTDTMGRPCL   62 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEESS-CCSBCS-S-CTTCCSCCCBBTTSCBBC
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCccccccCc-CCCccc-c-cccceeeccccccCCccc
Confidence            46666667542     2 566666666666664321 123221 0 012445555555555553

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=96.08  E-value=0.0045  Score=52.94  Aligned_cols=19  Identities=26%  Similarity=0.453  Sum_probs=12.5

Q ss_pred             CceeCCCCcccCCCCccCC
Q psy9568          99 NKCRCPPGFLGDYCEIWQR  117 (248)
Q Consensus        99 ~~C~C~~g~~g~~C~~~~~  117 (248)
                      +.|.|.++|.|..|+....
T Consensus       272 ~~C~C~~nt~G~~Ce~C~~  290 (375)
T 4aqt_A          272 LMCNCKHNTYGVDCEKCLP  290 (375)
T ss_dssp             EEECCCTTEESTTSCEECT
T ss_pred             eeeeCcCCCcCCCcccCCC
Confidence            4567777777777775443

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=96.06  E-value=0.0033  Score=37.32  Aligned_cols=28  Identities=29%  Similarity=0.889  Sum_probs=20.4

Q ss_pred             CCCCCCCccC-----CCCeeecCCCCccCCCCC
Q psy9568         160 PKPCKQGVCS-----AARTCACYEGWFGRTCSQ  187 (248)
Q Consensus       160 ~~~C~~g~C~-----~~~~C~C~~g~~G~~C~~  187 (248)
                      ...|.||+|.     ..+.|.|++||+|.+|+.
T Consensus        13 ~~yC~nG~C~~~~~~~~~~C~C~~gy~G~RCe~   45 (50)
T 3e50_C           13 TQFCFHGTCRFLVQEDKPACVCHSGYVGARCEH   45 (50)
T ss_pred             cCcccCCEEeeccCCCCeEEECCCCCcccCCCc
Confidence            3556667665     457888888888888864

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=95.94  E-value=0.0037  Score=54.00  Aligned_cols=53  Identities=30%  Similarity=0.657  Sum_probs=37.6

Q ss_pred             CCCCCCEeecC---CceeeCCCCc---CCCCC-cCCCC--CCCCCCCeecC---CCceeeCCCCccC
Q psy9568          24 KCLNGGKCVQK---DTCECQKGFY---GLRCE-FCICT--EKCLNGGKCVQ---KDTCECQKGFYGL   78 (248)
Q Consensus        24 ~C~~~g~C~~~---~~C~C~~G~~---G~~C~-~~~c~--~~C~~~g~C~~---~~~C~C~~g~~G~   78 (248)
                      +|..++.|++.   |.|.|++||+   |..|+ +++|.  .+|.+  .|++   +|.|.|.+||.+.
T Consensus         7 ~~~c~~~C~~~~~~y~C~C~~G~~~~~~~~C~dideC~~~~~C~~--~C~n~~g~~~C~C~~g~~~~   71 (400)
T 3p5b_L            7 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQLD   71 (400)
T ss_dssp             GGGCSSEEEECSSSEEEECCTTEEECSSSCEEECCCCSTTSSCSS--CCBCCSSSCBCCCCTTCCCC
T ss_pred             CCCCCCEeECCCCCeEEECCCCCCcCCCCcccCchhhhccCCCCC--ccCCCccceeeecccccccc
Confidence            34445688863   6899999998   77885 34454  45654  6776   5799999999864

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=95.86  E-value=0.0021  Score=55.19  Aligned_cols=48  Identities=35%  Similarity=0.874  Sum_probs=15.6

Q ss_pred             CCCeeeCCCCCC----CCCCCcCCCCCCC--CCCCCCCccC---CCCeeecCCCCc----cCCCC
Q psy9568         135 GVNKCRCPPGFL----GDYCEIWQRPYIC--PKPCKQGVCS---AARTCACYEGWF----GRTCS  186 (248)
Q Consensus       135 ~~~~C~C~~g~~----g~~C~~~~~~~~c--~~~C~~g~C~---~~~~C~C~~g~~----G~~C~  186 (248)
                      ++|.|.|++||+    |..|+.   .++|  ..+|.++ |.   ++|+|.|++||+    |..|.
T Consensus        22 g~~~C~C~~G~~l~~~~~~C~d---~~eC~~~~~C~~~-C~~~~g~~~C~C~~g~~l~~d~~~C~   82 (386)
T 3v65_B           22 GAVQCTCHTGYRLTEDGRTCQD---VNECAEEGYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCK   82 (386)
T ss_dssp             ---------------------------------CCTTE-EC-----CCEECCTTEEECTTSSCEE
T ss_pred             CCcEeECCCCceECCCCCccCc---cceeCCcCcccCc-CCCCCCCCeEEECCCceEcCCCCeEC
Confidence            347788888887    667742   4455  3456544 65   678888888887    66664

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=95.60  E-value=0.0047  Score=37.99  Aligned_cols=27  Identities=48%  Similarity=1.164  Sum_probs=19.1

Q ss_pred             CCCCCCeecC-------CCceeeCCCCccCCCCc
Q psy9568          56 KCLNGGKCVQ-------KDTCECQKGFYGLRCEF   82 (248)
Q Consensus        56 ~C~~~g~C~~-------~~~C~C~~g~~G~~C~~   82 (248)
                      +|.++|+|+.       .+.|.|++||.|.+|+.
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~   48 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY   48 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCE
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCcc
Confidence            5777888861       24677888888877764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.59  E-value=0.0099  Score=55.98  Aligned_cols=11  Identities=45%  Similarity=1.029  Sum_probs=5.6

Q ss_pred             CCceeCCCCcc
Q psy9568          98 VNKCRCPPGFL  108 (248)
Q Consensus        98 ~~~C~C~~g~~  108 (248)
                      +|.|.|.+||.
T Consensus       371 sy~C~C~~Gy~  381 (791)
T 3m0c_C          371 GYKCQCEEGFQ  381 (791)
T ss_dssp             CBCCCCCSSEE
T ss_pred             CceeecCCCCE
Confidence            34555555554

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=95.40  E-value=0.018  Score=49.64  Aligned_cols=16  Identities=25%  Similarity=0.611  Sum_probs=11.2

Q ss_pred             CCeee-cCCCCccCCCC
Q psy9568         171 ARTCA-CYEGWFGRTCS  186 (248)
Q Consensus       171 ~~~C~-C~~g~~G~~C~  186 (248)
                      ++.|. |..+++|.+|+
T Consensus       356 ~G~C~~C~~nt~G~~CE  372 (403)
T 2y38_A          356 GGVCLDCQHHTTGINCE  372 (403)
T ss_dssp             CEEESSCCSSEESTTSC
T ss_pred             CCCCCCCcCcCcCCCCC
Confidence            45664 77777777775

>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*

Probab=95.40  E-value=0.0076  Score=49.42  Aligned_cols=59  Identities=31%  Similarity=0.676  Sum_probs=41.2

Q ss_pred             CceecCCCceeCCCCcccCCCCccCC---------CCCCC-CCCCCCCCceeeCCCeeeCCCCC------CCCCCCc
Q psy9568          92 GGRCKGVNKCRCPPGFLGDYCEIWQR---------PYISK-CIIPCLNGGRCKGVNKCRCPPGF------LGDYCEI  152 (248)
Q Consensus        92 ~g~C~~~~~C~C~~g~~g~~C~~~~~---------~~~~~-c~~~C~~~g~C~~~~~C~C~~g~------~g~~C~~  152 (248)
                      +|.|.- +.|.|.+||.|..|+-...         .+... -...|+++|.|+- ++|.|..+|      .|.+|+.
T Consensus       201 ~G~~~C-G~C~C~~g~~G~~CeC~~~~~~~~~~~~~C~~~~~~~~CSgrG~C~C-G~C~C~~~~~~~~~~~G~~~~~  275 (280)
T 2p26_A          201 KGFLEC-GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC-GQCLCHTSDVPGKLIYGQYCEH  275 (280)
T ss_dssp             SEEEET-TEEEECTTEESTTSCEECTTSCHHHHHHTTCSSTTSCGGGGSEEEET-TEEEECCCSSTTCEEESTTSCE
T ss_pred             CCeECC-CceeCCCCCcCCcceecCCccccccccccCCCCCCCCccCCCceEeC-CeeECcCCCCCCeeEeeEeccc
Confidence            366663 6899999999999974322         12111 1235999999986 799997765      6888764

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=95.33  E-value=0.0053  Score=36.47  Aligned_cols=28  Identities=32%  Similarity=0.927  Sum_probs=21.0

Q ss_pred             CCCCCCccC-----CCCeeecCCCCccCCCCCC
Q psy9568         161 KPCKQGVCS-----AARTCACYEGWFGRTCSQR  188 (248)
Q Consensus       161 ~~C~~g~C~-----~~~~C~C~~g~~G~~C~~~  188 (248)
                      ..|.||+|.     +...|.|++||+|.+|+..
T Consensus        14 ~yC~nG~C~~~~~~~~~~C~C~~gy~G~RCe~~   46 (50)
T 1iox_A           14 HYCIKGRCRFVVAEQTPSCVCDEGYIGARCERV   46 (50)
T ss_dssp             TSCTTCCEEEETTTTEEEECCCTTEETTTTCEE
T ss_pred             CcccCCEEEeEcCCCCeEEECCCCcccCCCCee
Confidence            556677774     4567999999999999753

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=95.16  E-value=0.0081  Score=35.64  Aligned_cols=26  Identities=38%  Similarity=1.004  Sum_probs=14.9

Q ss_pred             CCCCCCccC-----CCCeeecCCCCccCCCC
Q psy9568         161 KPCKQGVCS-----AARTCACYEGWFGRTCS  186 (248)
Q Consensus       161 ~~C~~g~C~-----~~~~C~C~~g~~G~~C~  186 (248)
                      ..|.||+|.     +...|.|++||+|.+|+
T Consensus        18 ~yC~nG~C~~i~~~~~~~C~C~~gy~G~RCe   48 (50)
T 2rnl_A           18 NFCIHGECKYIEHLEAVTCKCQQEYFGERCG   48 (50)
T ss_dssp             GTCSSSEEEEETTTTEEEEECCSSCCSSSCC
T ss_pred             CcCCCCEEEEecCCCCeeEECCCCccccccc
Confidence            345555554     23456666666666665

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=95.12  E-value=0.008  Score=39.17  Aligned_cols=28  Identities=32%  Similarity=0.864  Sum_probs=21.9

Q ss_pred             CCCCCCCccC-----CCCeeecCCCCccCCCCC
Q psy9568         160 PKPCKQGVCS-----AARTCACYEGWFGRTCSQ  187 (248)
Q Consensus       160 ~~~C~~g~C~-----~~~~C~C~~g~~G~~C~~  187 (248)
                      .+.|.||+|.     ..+.|.|++||+|..|+.
T Consensus        45 ~~yClnG~C~~i~~~~~~~C~C~~GYtG~RCE~   77 (79)
T 1xdt_R           45 KDFCIHGECKYVKELRAPSCICHPGYHGERCHG   77 (79)
T ss_dssp             TTCCSSEEECCBGGGTBCCEEECTTEESTTCCE
T ss_pred             cCcCCCCEeeeecCCCCeEEEcCCCcccccccc
Confidence            4667788884     467899999999999864

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=94.97  E-value=0.0063  Score=52.21  Aligned_cols=50  Identities=30%  Similarity=0.850  Sum_probs=16.3

Q ss_pred             Eeec---CCceeeCCCCc----CCCCC-cCCCC--CCCCCCCeecC---CCceeeCCCCc----cCCCC
Q psy9568          30 KCVQ---KDTCECQKGFY----GLRCE-FCICT--EKCLNGGKCVQ---KDTCECQKGFY----GLRCE   81 (248)
Q Consensus        30 ~C~~---~~~C~C~~G~~----G~~C~-~~~c~--~~C~~~g~C~~---~~~C~C~~g~~----G~~C~   81 (248)
                      .|.+   .+.|.|++||+    |..|. +.+|.  .+|.+.  |++   ++.|.|.+||.    |..|.
T Consensus        16 ~C~~~~g~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~--C~~~~g~~~C~C~~g~~l~~d~~~C~   82 (386)
T 3v65_B           16 KCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG--CTNSEGAFQCWCEAGYELRPDRRSCK   82 (386)
T ss_dssp             ------------------------------------CCTTE--EC-----CCEECCTTEEECTTSSCEE
T ss_pred             CCcCCCCCcEeECCCCceECCCCCccCccceeCCcCcccCc--CCCCCCCCeEEECCCceEcCCCCeEC
Confidence            6754   26899999998    88885 34463  467653  776   57899999997    56664

>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*

Probab=94.93  E-value=0.0049  Score=56.57  Aligned_cols=45  Identities=24%  Similarity=0.489  Sum_probs=37.6

Q ss_pred             eeCCCCccCCCCc-CCCCCCCCCCceecCCCceeCCCCcccCCCCcc
Q psy9568          70 ECQKGFYGLRCEF-SKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIW  115 (248)
Q Consensus        70 ~C~~g~~G~~C~~-~~C~~~C~~~g~C~~~~~C~C~~g~~g~~C~~~  115 (248)
                      .|.+||.|..|.+ ..|...|.++|.|+. ++|.|.+||.|..|...
T Consensus       521 ~C~~gw~g~dc~i~~~Cp~~C~ghG~C~~-G~C~Cd~G~~G~~C~~~  566 (725)
T 2e26_A          521 DKQQTWAIDNVYIGDGCLDMCSGHGRCVQ-GSCVCDEQWGGLYCDEP  566 (725)
T ss_dssp             CTTCCEEEEEEEEESCSSGGGGGSEEEET-TEEEECTTEESTTSCEE
T ss_pred             ccCCCcccccccccCCCCcccCCCcEECC-CCEeeCCCccCCCcCcc
Confidence            6788999999884 778888899999985 78999999999888754

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=94.18  E-value=0.038  Score=47.22  Aligned_cols=15  Identities=40%  Similarity=1.123  Sum_probs=11.5

Q ss_pred             CceeeCCCCcCCCCC
Q psy9568          35 DTCECQKGFYGLRCE   49 (248)
Q Consensus        35 ~~C~C~~G~~G~~C~   49 (248)
                      +.|.|.++|.|..|+
T Consensus       272 ~~C~C~~nt~G~~Ce  286 (375)
T 4aqt_A          272 LMCNCKHNTYGVDCE  286 (375)
T ss_dssp             EEECCCTTEESTTSC
T ss_pred             eeeeCcCCCcCCCcc
Confidence            457888888888886

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=93.90  E-value=0.013  Score=43.73  Aligned_cols=28  Identities=43%  Similarity=1.071  Sum_probs=15.6

Q ss_pred             CCCCCCceec---CCCceeCCCCcccCCCCc
Q psy9568          87 IPCLNGGRCK---GVNKCRCPPGFLGDYCEI  114 (248)
Q Consensus        87 ~~C~~~g~C~---~~~~C~C~~g~~g~~C~~  114 (248)
                      .+|.++|.|.   +.|+|.|.+||.|..|+.
T Consensus       125 ~~C~~~g~C~~~~~~~~c~C~~g~~G~~Ce~  155 (162)
T 1g1s_A          125 MSCSKQGECLETIGNYTCSCYPGFYGPECEY  155 (162)
T ss_dssp             TGGGGSEEEEECSSSEEEEECTTEESTTSCE
T ss_pred             CCCCCCCEEecCCCCceEeCCCCCcCccccc
Confidence            3455555555   345566666666666554

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=93.71  E-value=0.014  Score=43.53  Aligned_cols=33  Identities=30%  Similarity=0.905  Sum_probs=23.5

Q ss_pred             CCCCCC-CccC---CCCeeecCCCCccCCCCCCCCCCC
Q psy9568         160 PKPCKQ-GVCS---AARTCACYEGWFGRTCSQRSDSGE  193 (248)
Q Consensus       160 ~~~C~~-g~C~---~~~~C~C~~g~~G~~C~~~~~~~~  193 (248)
                      +.+|.+ |+|.   ++|+|.|++||.|..|+.. ++|.
T Consensus       124 ~~~C~~~g~C~~~~~~~~c~C~~g~~G~~Ce~~-~~c~  160 (162)
T 1g1s_A          124 DMSCSKQGECLETIGNYTCSCYPGFYGPECEYV-RDDD  160 (162)
T ss_dssp             TTGGGGSEEEEECSSSEEEEECTTEESTTSCEE-CC--
T ss_pred             CCCCCCCCEEecCCCCceEeCCCCCcCcccccC-cccC
Confidence            456765 7776   6789999999999999754 3443

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=93.64  E-value=0.053  Score=39.85  Aligned_cols=28  Identities=50%  Similarity=1.058  Sum_probs=17.9

Q ss_pred             CCCCCCEeecC-----C-ceeeCCCCcCCCCCcC
Q psy9568          24 KCLNGGKCVQK-----D-TCECQKGFYGLRCEFC   51 (248)
Q Consensus        24 ~C~~~g~C~~~-----~-~C~C~~G~~G~~C~~~   51 (248)
                      +|.|+|.|+..     + .|.|++||.|+.|++.
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~   47 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEID   47 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEE
T ss_pred             CCCCCCCcCCCccccCCccccCCCCCCCCceecc
Confidence            57777777542     2 5777777777777643

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=93.46  E-value=0.057  Score=31.91  Aligned_cols=15  Identities=47%  Similarity=1.289  Sum_probs=8.5

Q ss_pred             CceeeCCCCcCCCCC
Q psy9568          35 DTCECQKGFYGLRCE   49 (248)
Q Consensus        35 ~~C~C~~G~~G~~C~   49 (248)
                      ..|.|++||+|.+|+
T Consensus        30 ~~C~C~~gy~G~RCe   44 (50)
T 3e50_C           30 PACVCHSGYVGARCE   44 (50)
T ss_pred             eEEECCCCCcccCCC
Confidence            355555666555554

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=92.76  E-value=0.092  Score=38.57  Aligned_cols=15  Identities=53%  Similarity=1.170  Sum_probs=8.2

Q ss_pred             eeeCCCCCCCCCCCc
Q psy9568         138 KCRCPPGFLGDYCEI  152 (248)
Q Consensus       138 ~C~C~~g~~g~~C~~  152 (248)
                      .|.|++||.|..|++
T Consensus        32 ~C~Cp~g~~G~~Cei   46 (145)
T 2i9a_A           32 WCNCPKKFGGQHCEI   46 (145)
T ss_dssp             EEECCTTEESTTSCE
T ss_pred             cccCCCCCCCCceec
Confidence            455555555555554

>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}

Probab=92.70  E-value=0.02  Score=48.71  Aligned_cols=30  Identities=27%  Similarity=0.783  Sum_probs=24.4

Q ss_pred             ccCCCCcCCCCCCEeecCCceeeCCCCcCCC
Q psy9568          17 VSGICTEKCLNGGKCVQKDTCECQKGFYGLR   47 (248)
Q Consensus        17 ~~~~C~~~C~~~g~C~~~~~C~C~~G~~G~~   47 (248)
                      ....|++.|++||.|++ +.|+|.+||.|.+
T Consensus       190 Ig~~Cp~~CsGhG~C~~-g~C~Cd~G~~g~d  219 (387)
T 2ddu_A          190 ISEPCPSYCSGHGDCIS-GVCFCDLGYTAAQ  219 (387)
T ss_dssp             EESCCGGGGGGSEEEET-TEEEECTTEEEET
T ss_pred             ecccCccccCCCceecC-CeEEecCCcccCC
Confidence            44578888999999987 7899999998864

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=92.30  E-value=0.046  Score=49.47  Aligned_cols=29  Identities=31%  Similarity=1.042  Sum_probs=23.0

Q ss_pred             CCCCCC-CccC----CCCeeecC-CCCccCCCCCC
Q psy9568         160 PKPCKQ-GVCS----AARTCACY-EGWFGRTCSQR  188 (248)
Q Consensus       160 ~~~C~~-g~C~----~~~~C~C~-~g~~G~~C~~~  188 (248)
                      +++|.| |+|.    +.|.|.|+ +||+|..|+..
T Consensus         6 s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~   40 (587)
T 3nt1_A            6 SNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTP   40 (587)
T ss_dssp             TCCCCTTCEEEEEETTEEEEECTTSSEETTTTCEE
T ss_pred             CCCCCCCCEeeCCCCCCeEEecCCCCccCCCCCCc
Confidence            678877 7886    46889998 89999988763

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=92.02  E-value=0.12  Score=30.51  Aligned_cols=14  Identities=50%  Similarity=1.414  Sum_probs=8.1

Q ss_pred             ceeeCCCCcCCCCC
Q psy9568          36 TCECQKGFYGLRCE   49 (248)
Q Consensus        36 ~C~C~~G~~G~~C~   49 (248)
                      .|.|++||+|.+|+
T Consensus        35 ~C~C~~gy~G~RCe   48 (50)
T 2rnl_A           35 TCKCQQEYFGERCG   48 (50)
T ss_dssp             EEECCSSCCSSSCC
T ss_pred             eEECCCCccccccc
Confidence            45566666665554

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=91.29  E-value=0.063  Score=48.35  Aligned_cols=31  Identities=32%  Similarity=0.911  Sum_probs=22.8

Q ss_pred             CCCc-CCCCCCEeec-C---CceeeC-CCCcCCCCCc
Q psy9568          20 ICTE-KCLNGGKCVQ-K---DTCECQ-KGFYGLRCEF   50 (248)
Q Consensus        20 ~C~~-~C~~~g~C~~-~---~~C~C~-~G~~G~~C~~   50 (248)
                      .|.. +|.|+|.|.+ .   +.|.|+ +||+|..|+.
T Consensus         4 ~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   40 (553)
T 1q4g_A            4 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI   40 (553)
T ss_dssp             GGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred             cCCCCCCCCCCCcCCCCCCceEeeCCCCCcCCCCCCC
Confidence            4544 7888888876 2   678888 8888888874

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=91.28  E-value=0.082  Score=47.82  Aligned_cols=31  Identities=39%  Similarity=1.086  Sum_probs=22.2

Q ss_pred             CCCc-CCCCCCEeec----CCceeeC-CCCcCCCCCc
Q psy9568          20 ICTE-KCLNGGKCVQ----KDTCECQ-KGFYGLRCEF   50 (248)
Q Consensus        20 ~C~~-~C~~~g~C~~----~~~C~C~-~G~~G~~C~~   50 (248)
                      .|.. +|.|+|.|++    .|.|.|+ +||+|..|+.
T Consensus         3 ~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   39 (587)
T 3nt1_A            3 PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT   39 (587)
T ss_dssp             TTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCE
T ss_pred             CCCCCCCCCCCEeeCCCCCCeEEecCCCCccCCCCCC
Confidence            4543 7888888873    3678888 8888888874

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=91.10  E-value=0.12  Score=33.54  Aligned_cols=15  Identities=40%  Similarity=1.145  Sum_probs=8.4

Q ss_pred             CceeeCCCCcCCCCC
Q psy9568          35 DTCECQKGFYGLRCE   49 (248)
Q Consensus        35 ~~C~C~~G~~G~~C~   49 (248)
                      +.|.|++||+|..|+
T Consensus        62 ~~C~C~~GYtG~RCE   76 (79)
T 1xdt_R           62 PSCICHPGYHGERCH   76 (79)
T ss_dssp             CCEEECTTEESTTCC
T ss_pred             eEEEcCCCccccccc
Confidence            345555555555554

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=91.02  E-value=0.081  Score=31.23  Aligned_cols=27  Identities=37%  Similarity=1.043  Sum_probs=17.1

Q ss_pred             CCCCCceec-----CCCceeCCCCcccCCCCcc
Q psy9568          88 PCLNGGRCK-----GVNKCRCPPGFLGDYCEIW  115 (248)
Q Consensus        88 ~C~~~g~C~-----~~~~C~C~~g~~g~~C~~~  115 (248)
                      .|.+ |+|.     +...|.|++||+|..|+..
T Consensus        15 yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe~~   46 (50)
T 1iox_A           15 YCIK-GRCRFVVAEQTPSCVCDEGYIGARCERV   46 (50)
T ss_dssp             SCTT-CCEEEETTTTEEEECCCTTEETTTTCEE
T ss_pred             cccC-CEEEeEcCCCCeEEECCCCcccCCCCee
Confidence            4555 5663     2346778888888777753

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}

Probab=90.16  E-value=0.13  Score=38.20  Aligned_cols=28  Identities=43%  Similarity=1.162  Sum_probs=21.6

Q ss_pred             CCCCCCCeecC---CCceeeCCCCccCCCCc
Q psy9568          55 EKCLNGGKCVQ---KDTCECQKGFYGLRCEF   82 (248)
Q Consensus        55 ~~C~~~g~C~~---~~~C~C~~g~~G~~C~~   82 (248)
                      .+|.++|+|.+   .++|.|.+||.|..|+.
T Consensus       125 ~~C~~~g~C~~~~~~~~c~C~~g~~g~~C~~  155 (164)
T 3cfw_A          125 WSCSGHGECVEIINNYTCNCDVGYYGPQCQF  155 (164)
T ss_dssp             TSSCSSEEEEEETTEEEEEECTTCBSSSSCB
T ss_pred             CcCCCCCeecccCCCceeeeCCCcccccccc
Confidence            46777788875   46888888888888874

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=90.05  E-value=0.056  Score=39.86  Aligned_cols=27  Identities=41%  Similarity=0.990  Sum_probs=13.7

Q ss_pred             CCCCCceee---CCCeeeCCCCCCCCCCCc
Q psy9568         126 PCLNGGRCK---GVNKCRCPPGFLGDYCEI  152 (248)
Q Consensus       126 ~C~~~g~C~---~~~~C~C~~g~~g~~C~~  152 (248)
                      +|.+++.|.   ..+.|.|.+||+|..|++
T Consensus       126 pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce~  155 (157)
T 1g1t_A          126 SCSGHGECVETINNYTCKCDPGFSGLKCEQ  155 (157)
T ss_dssp             GGGGSEEEEEETTEEEEEECTTEESTTSCE
T ss_pred             CCCCCCEeecCCCCeeEECCCCccCccccc
Confidence            444445554   234555555555555553

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=89.88  E-value=0.11  Score=46.87  Aligned_cols=28  Identities=36%  Similarity=0.958  Sum_probs=17.6

Q ss_pred             CCCCCCceecC----CCceeCC-CCcccCCCCc
Q psy9568          87 IPCLNGGRCKG----VNKCRCP-PGFLGDYCEI  114 (248)
Q Consensus        87 ~~C~~~g~C~~----~~~C~C~-~g~~g~~C~~  114 (248)
                      .||.|+|+|..    .|.|.|. +||+|..|+.
T Consensus         8 ~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   40 (553)
T 1q4g_A            8 YPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI   40 (553)
T ss_dssp             CCCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred             CCCCCCCCcCCCCCCceEeeCCCCCcCCCCCCC
Confidence            55666666653    3566666 6666666664

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}

Probab=88.85  E-value=0.15  Score=37.79  Aligned_cols=26  Identities=31%  Similarity=0.928  Sum_probs=12.1

Q ss_pred             CCCCCceec---CCCceeCCCCcccCCCC
Q psy9568          88 PCLNGGRCK---GVNKCRCPPGFLGDYCE  113 (248)
Q Consensus        88 ~C~~~g~C~---~~~~C~C~~g~~g~~C~  113 (248)
                      +|.++|.|.   ..+.|.|.+||.|..|+
T Consensus       126 ~C~~~g~C~~~~~~~~c~C~~g~~g~~C~  154 (164)
T 3cfw_A          126 SCSGHGECVEIINNYTCNCDVGYYGPQCQ  154 (164)
T ss_dssp             SSCSSEEEEEETTEEEEEECTTCBSSSSC
T ss_pred             cCCCCCeecccCCCceeeeCCCccccccc
Confidence            344444444   23445555555555444

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=88.59  E-value=0.08  Score=39.00  Aligned_cols=29  Identities=34%  Similarity=0.789  Sum_probs=23.9

Q ss_pred             CCCCCC-CccC---CCCeeecCCCCccCCCCCC
Q psy9568         160 PKPCKQ-GVCS---AARTCACYEGWFGRTCSQR  188 (248)
Q Consensus       160 ~~~C~~-g~C~---~~~~C~C~~g~~G~~C~~~  188 (248)
                      +.+|.+ |.|.   ..|.|.|.+||+|..|++.
T Consensus       124 ~~pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce~~  156 (157)
T 1g1t_A          124 NTSCSGHGECVETINNYTCKCDPGFSGLKCEQI  156 (157)
T ss_dssp             TTGGGGSEEEEEETTEEEEEECTTEESTTSCEE
T ss_pred             CCCCCCCCEeecCCCCeeEECCCCccCcccccc
Confidence            456765 8886   7889999999999999864

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=86.16  E-value=0.76  Score=31.37  Aligned_cols=33  Identities=15%  Similarity=0.397  Sum_probs=24.1

Q ss_pred             eeeccCCCCc-CCCCCCEeecC----CceeeCCCCcCC
Q psy9568          14 LLFVSGICTE-KCLNGGKCVQK----DTCECQKGFYGL   46 (248)
Q Consensus        14 ~~~~~~~C~~-~C~~~g~C~~~----~~C~C~~G~~G~   46 (248)
                      .+....+|.. .|+.++.|...    .+|+|.+||.++
T Consensus         6 ~~~~~h~C~~t~Cp~NA~C~r~~~G~e~CrCl~gY~~d   43 (105)
T 1n1i_A            6 NMSSAHKCIDTNVPENAACYRYLDGTEEWRCLLGFKEV   43 (105)
T ss_dssp             --CCTTSCCSSCCCTTEEEEECTTSCEEEEECTTEEEC
T ss_pred             cCCcCcEecCCCCCCCCCeEECCCCCEeEEEECCeecc
Confidence            3566778877 58899999752    479999999853

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=84.48  E-value=1.4  Score=29.87  Aligned_cols=27  Identities=19%  Similarity=0.746  Sum_probs=18.7

Q ss_pred             CCCc-CCCCCCEeec----CCceeeCCCCcCC
Q psy9568          20 ICTE-KCLNGGKCVQ----KDTCECQKGFYGL   46 (248)
Q Consensus        20 ~C~~-~C~~~g~C~~----~~~C~C~~G~~G~   46 (248)
                      +|.. .|+.++.|..    ..+|+|.+||.|+
T Consensus         6 ~C~~~~C~~NA~C~r~~~g~e~C~C~~gy~gd   37 (99)
T 1ob1_C            6 QCVKKQCPQNSGCFRHLDEREECKCLLNYKQE   37 (99)
T ss_dssp             CCCSCCCCTTEEEECCTTSCCEEEECTTEEEE
T ss_pred             EeccCCCCCCCCeEEcCCCCEEEEecCCeecC
Confidence            4444 6778888865    2478888888853

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=83.94  E-value=0.53  Score=27.57  Aligned_cols=21  Identities=24%  Similarity=0.749  Sum_probs=15.2

Q ss_pred             CCCCCccC---CCCeeecCCCCccC
Q psy9568         162 PCKQGVCS---AARTCACYEGWFGR  183 (248)
Q Consensus       162 ~C~~g~C~---~~~~C~C~~g~~G~  183 (248)
                      +|. +.|+   ++|.|.|++||++.
T Consensus        21 ~C~-~~C~n~~Gsy~C~C~~Gy~~~   44 (53)
T 1apq_A           21 QCQ-HLCHNYVGGYFCSCRPGYELQ   44 (53)
T ss_dssp             TTS-SEEEEETTEEEEECSTTCEEC
T ss_pred             CCC-CEeECCCCCeEEECCCCCeEC
Confidence            343 3555   68999999999864

>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*

Probab=83.69  E-value=0.35  Score=42.36  Aligned_cols=25  Identities=32%  Similarity=0.890  Sum_probs=11.3

Q ss_pred             CCC-CCCeecCCCceeeCCCCccCCCC
Q psy9568          56 KCL-NGGKCVQKDTCECQKGFYGLRCE   81 (248)
Q Consensus        56 ~C~-~~g~C~~~~~C~C~~g~~G~~C~   81 (248)
                      .|+ ++|+..- +.|.|.+||.|..|+
T Consensus       447 ~C~~g~G~~~C-G~C~C~~G~~G~~Ce  472 (472)
T 3t3p_B          447 RCNNGNGTFEC-GVCRCGPGWLGSQCE  472 (472)
T ss_dssp             TTTTTTEEEET-TEEEECTTC------
T ss_pred             ccCCCCeeEeC-CceECcCCCCCCCCC
Confidence            454 4555443 667777777776664

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=81.87  E-value=1.6  Score=39.09  Aligned_cols=20  Identities=30%  Similarity=0.747  Sum_probs=11.7

Q ss_pred             CCCCCEeec-CCceeeCCCCc
Q psy9568          25 CLNGGKCVQ-KDTCECQKGFY   44 (248)
Q Consensus        25 C~~~g~C~~-~~~C~C~~G~~   44 (248)
                      |...|.+.. .|.|.|.+||.
T Consensus       252 C~~dG~w~~p~G~C~C~~G~e  272 (536)
T 3fl7_A          252 CAVDGEWLVPIGQCLCQAGYE  272 (536)
T ss_dssp             ECTTSCBCCCBCCCEECTTEE
T ss_pred             EcCCCCEecccCcEeccCccc
Confidence            555555543 26677777776

>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}

Probab=80.37  E-value=0.89  Score=40.41  Aligned_cols=26  Identities=27%  Similarity=0.821  Sum_probs=14.1

Q ss_pred             CCCCCCeecCCCceeeCCCCccCCCC
Q psy9568          56 KCLNGGKCVQKDTCECQKGFYGLRCE   81 (248)
Q Consensus        56 ~C~~~g~C~~~~~C~C~~g~~G~~C~   81 (248)
                      .|.++|+|.+...|.|.+||..+.|+
T Consensus       455 ~C~~~GVCNn~~~CHC~~GwaPP~C~  480 (510)
T 3g5c_A          455 ICSGNGVCSNELKCVCNRHWIGSDCN  480 (510)
T ss_dssp             SGGGTEEEBTTSCEEECTTEESTTSC
T ss_pred             ccCCCCeeCCCCCcCCCCCCCCCCCC
Confidence            35555555555555555555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	248
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	0.002
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	0.002
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	0.003
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	0.003
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	0.004
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	0.004

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.002
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 88  PCLNGGRCK-GVN--KCRCPPGFLGDYCEIWQR 117
           PC N G+CK G+    C C  GF G  CE++ R
Sbjct: 7   PCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTR 39

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.002
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 126 PCLNGGRCK-GVN--KCRCPPGFLGDYCEIWQR 155
           PC N G+CK G+    C C  GF G  CE++ R
Sbjct: 7   PCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTR 39

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.003
 Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 88  PCLNGGRCK-GVN--KCRCPPGFLGDYCEI 114
           PCLNGG CK  +N  +C CP GF G  CE+
Sbjct: 10  PCLNGGSCKDDINSYECWCPFGFEGKNCEL 39

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.003
 Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 126 PCLNGGRCK-GVN--KCRCPPGFLGDYCEI 152
           PCLNGG CK  +N  +C CP GF G  CE+
Sbjct: 10  PCLNGGSCKDDINSYECWCPFGFEGKNCEL 39

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.0 bits (73), Expect = 0.004
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 88  PCLNGGRCK-GVN--KCRCPPGFLGDYCEI 114
           PC N   C   +   +C C PG+ G +CE+
Sbjct: 8   PCQNDATCLDQIGEFQCICMPGYEGVHCEV 37

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.0 bits (73), Expect = 0.004
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 126 PCLNGGRCK-GVN--KCRCPPGFLGDYCEI 152
           PC N   C   +   +C C PG+ G +CE+
Sbjct: 8   PCQNDATCLDQIGEFQCICMPGYEGVHCEV 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.34
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.28
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.19
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.16
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.14
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.13
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.13
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.08
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.07
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.04
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.0
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	97.99
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	97.95
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	97.95
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	97.9
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.9
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.82
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.81
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.67
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	97.58
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	97.44
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	97.43
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	97.42
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	97.31
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.03
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	96.98
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	96.97
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	96.65
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	96.6
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	96.59
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	96.52
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	96.52
d1jv2b4	31	Integrin beta EGF-like domains {Human (Homo sapien	96.48
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	96.22
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	96.12
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	95.76
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	95.74
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	95.73
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	95.7
d1jv2b5	43	Integrin beta EGF-like domains {Human (Homo sapien	95.58
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	95.39
d1jv2b4	31	Integrin beta EGF-like domains {Human (Homo sapien	95.34
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	95.1
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	95.04
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	94.78
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	94.72
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	94.57
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	94.52
d1jv2b5	43	Integrin beta EGF-like domains {Human (Homo sapien	93.97
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	93.66
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	93.59
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	93.3
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	93.27
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	93.21
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	92.42
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	92.14
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	91.07
d1kloa3	51	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	90.21
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	89.37
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	87.11
d1kloa2	56	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	86.98
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	85.56
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	80.05

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.5e-07  Score=54.37  Aligned_cols=35  Identities=31%  Similarity=0.851  Sum_probs=28.0

Q ss_pred             CCCC-CCCCCCCccC---CCCeeecCCCCccCCCCCCCC
Q psy9568         156 PYIC-PKPCKQGVCS---AARTCACYEGWFGRTCSQRSD  190 (248)
Q Consensus       156 ~~~c-~~~C~~g~C~---~~~~C~C~~g~~G~~C~~~~~  190 (248)
                      .+.| +++|.||+|.   ++|+|.|++||+|..|++++.
T Consensus         8 ~~~C~~~PC~nG~C~~~~~~y~C~C~~G~~G~~Ce~~I~   46 (48)
T d1autl1           8 EHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVS   46 (48)
T ss_dssp             CCSSSSTTTTSEEECCCSSCCCEEECTTEESTTSCEECC
T ss_pred             CCcccCCCCCCCEEECCCCCCeEeCCCCCcCCCcccccC
Confidence            3455 6888888887   688999999999999987653

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.2e-07  Score=51.34  Aligned_cols=30  Identities=33%  Similarity=0.910  Sum_probs=18.7

Q ss_pred             CCC-CCCCCC-CccC---CCCeeecCCCCccCCCC
Q psy9568         157 YIC-PKPCKQ-GVCS---AARTCACYEGWFGRTCS  186 (248)
Q Consensus       157 ~~c-~~~C~~-g~C~---~~~~C~C~~g~~G~~C~  186 (248)
                      +.| +++|.| |+|+   ++|+|.|++||+|..|+
T Consensus         4 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   38 (39)
T d1edmb_           4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             ccCCCCCCCCCcEEEcCCCCEEEECCCCCCCCCCC
Confidence            344 566665 5665   55667777777776664

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2.6e-07  Score=50.97  Aligned_cols=28  Identities=29%  Similarity=0.863  Sum_probs=17.3

Q ss_pred             CCCCCC-CccC---CCCeeecCCCCccCCCCC
Q psy9568         160 PKPCKQ-GVCS---AARTCACYEGWFGRTCSQ  187 (248)
Q Consensus       160 ~~~C~~-g~C~---~~~~C~C~~g~~G~~C~~  187 (248)
                      +.+|.| |+|+   ++|+|.|++||+|..|++
T Consensus         6 ~~PC~n~g~C~~~~~~y~C~C~~G~~G~~Ce~   37 (39)
T d2vj3a2           6 SNPCQNDATCLDQIGEFQCICMPGYEGVHCEV   37 (39)
T ss_dssp             TCCCCSSCEEEECSSCEEEECCTTEESSSSCE
T ss_pred             CCCCCCCCEEECCCCCEEEeCCCCCccCcCee
Confidence            456655 5665   556666666666666653

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=4.7e-07  Score=49.90  Aligned_cols=28  Identities=39%  Similarity=1.101  Sum_probs=19.0

Q ss_pred             CCCCCC-CccC---CCCeeecCCCCccCCCCC
Q psy9568         160 PKPCKQ-GVCS---AARTCACYEGWFGRTCSQ  187 (248)
Q Consensus       160 ~~~C~~-g~C~---~~~~C~C~~g~~G~~C~~  187 (248)
                      ++||.| |+|+   +.|+|.|++||+|..|++
T Consensus         5 ~~PC~ngg~C~~~~~~y~C~C~~G~~G~~Cei   36 (39)
T d1xkba1           5 TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL   36 (39)
T ss_dssp             TCCCCSSCEECCCSSSCCEECCTTEETTTTCE
T ss_pred             CCCCCCCcEEECCCCCEEEECCCCCCcCcCeE
Confidence            466665 6666   567777777777777764

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=7.5e-07  Score=49.07  Aligned_cols=27  Identities=44%  Similarity=1.020  Sum_probs=12.2

Q ss_pred             CCCCCCceec---CCCceeCCCCcccCCCC
Q psy9568          87 IPCLNGGRCK---GVNKCRCPPGFLGDYCE  113 (248)
Q Consensus        87 ~~C~~~g~C~---~~~~C~C~~g~~g~~C~  113 (248)
                      .||.++|+|+   +.|+|.|++||+|..|+
T Consensus         7 ~PC~n~g~C~~~~~~y~C~C~~G~~G~~Ce   36 (39)
T d2vj3a2           7 NPCQNDATCLDQIGEFQCICMPGYEGVHCE   36 (39)
T ss_dssp             CCCCSSCEEEECSSCEEEECCTTEESSSSC
T ss_pred             CCCCCCCEEECCCCCEEEeCCCCCccCcCe
Confidence            3444444444   23444444444444444

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=7.1e-07  Score=49.23  Aligned_cols=32  Identities=44%  Similarity=1.000  Sum_probs=21.3

Q ss_pred             cCCCCc-CCCCCCEeec---CCceeeCCCCcCCCCC
Q psy9568          18 SGICTE-KCLNGGKCVQ---KDTCECQKGFYGLRCE   49 (248)
Q Consensus        18 ~~~C~~-~C~~~g~C~~---~~~C~C~~G~~G~~C~   49 (248)
                      .+.|.. +|.++|.|++   .|+|.|++||+|+.|+
T Consensus         3 ~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   38 (39)
T d1edmb_           3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             cccCCCCCCCCCcEEEcCCCCEEEECCCCCCCCCCC
Confidence            345554 6777777764   2577777777777775

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=7.9e-07  Score=49.62  Aligned_cols=31  Identities=29%  Similarity=0.812  Sum_probs=17.0

Q ss_pred             CCCCCC-CccC-----CCCeeecCCCCccCCCCCCCC
Q psy9568         160 PKPCKQ-GVCS-----AARTCACYEGWFGRTCSQRSD  190 (248)
Q Consensus       160 ~~~C~~-g~C~-----~~~~C~C~~g~~G~~C~~~~~  190 (248)
                      ++||.| |+|.     ..|.|.|++||+|.+|++++.
T Consensus         3 ~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~~~~   39 (41)
T d1tpga1           3 EPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR   39 (41)
T ss_dssp             SCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCSS
T ss_pred             CCCCCCCCEEecCCCCCCeEECCCCCCCCCCcCcCcC
Confidence            345554 4554     245666666666666655443

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.08  E-value=4.2e-07  Score=49.52  Aligned_cols=27  Identities=33%  Similarity=1.004  Sum_probs=15.3

Q ss_pred             CCCCCC-CccC---CCCeeecCCCCccCCCC
Q psy9568         160 PKPCKQ-GVCS---AARTCACYEGWFGRTCS  186 (248)
Q Consensus       160 ~~~C~~-g~C~---~~~~C~C~~g~~G~~C~  186 (248)
                      +++|.| |+|+   +.|+|.|++||+|..|+
T Consensus         7 ~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           7 SSPCQNGGSCKDQLQSYICFCLPAFEGRNCE   37 (37)
T ss_dssp             GCCCCTTCEEEEETTEEEEECCTTEESTTSC
T ss_pred             CCCCCCCCEEECCCCCeEEECCCCCcCCCCC
Confidence            455554 5555   45566666666666553

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.5e-06  Score=47.83  Aligned_cols=27  Identities=52%  Similarity=1.202  Sum_probs=12.3

Q ss_pred             CCCCCCceec---CCCceeCCCCcccCCCC
Q psy9568          87 IPCLNGGRCK---GVNKCRCPPGFLGDYCE  113 (248)
Q Consensus        87 ~~C~~~g~C~---~~~~C~C~~g~~g~~C~  113 (248)
                      .||.++|+|+   +.|.|.|++||+|..|+
T Consensus         6 ~PC~ngg~C~~~~~~y~C~C~~G~~G~~Ce   35 (39)
T d1xkba1           6 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCE   35 (39)
T ss_dssp             CCCCSSCEECCCSSSCCEECCTTEETTTTC
T ss_pred             CCCCCCcEEECCCCCEEEECCCCCCcCcCe
Confidence            3444444444   23444444444444444

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.04  E-value=1e-06  Score=47.97  Aligned_cols=14  Identities=43%  Similarity=1.016  Sum_probs=5.9

Q ss_pred             CceeCCCCcccCCC
Q psy9568          99 NKCRCPPGFLGDYC  112 (248)
Q Consensus        99 ~~C~C~~g~~g~~C  112 (248)
                      |.|.|++||+|..|
T Consensus        23 y~C~C~~g~~G~~C   36 (37)
T d2c4fl1          23 YICFCLPAFEGRNC   36 (37)
T ss_dssp             EEEECCTTEESTTS
T ss_pred             eEEECCCCCcCCCC
Confidence            34444444444433

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1e-06  Score=49.47  Aligned_cols=28  Identities=32%  Similarity=0.997  Sum_probs=18.2

Q ss_pred             CCCCCC-CccC---CCCeeecCCCCccCCCCC
Q psy9568         160 PKPCKQ-GVCS---AARTCACYEGWFGRTCSQ  187 (248)
Q Consensus       160 ~~~C~~-g~C~---~~~~C~C~~g~~G~~C~~  187 (248)
                      +.+|.| |+|+   ++|+|.|++||+|..|++
T Consensus        10 ~~pC~n~g~C~n~~g~y~C~C~~G~~G~~Ce~   41 (42)
T d2vj3a1          10 ANPCEHAGKCINTLGSFECQCLQGYTGPRCEI   41 (42)
T ss_dssp             SCSSSTTCEEEECSSSEEEECCTTEESTTSCE
T ss_pred             CCCCCCCcEeECCCCCEEeECCCCCcCCCCcC
Confidence            356655 6665   566777777777777653

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.4e-06  Score=46.78  Aligned_cols=27  Identities=33%  Similarity=0.920  Sum_probs=16.0

Q ss_pred             CCCCCC-CccC---CCCeeecCCCCccCCCC
Q psy9568         160 PKPCKQ-GVCS---AARTCACYEGWFGRTCS  186 (248)
Q Consensus       160 ~~~C~~-g~C~---~~~~C~C~~g~~G~~C~  186 (248)
                      +++|.| |+|+   .+|+|.|++||+|..|+
T Consensus         5 ~~PC~ngg~C~~~~~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           5 SSPCLHNGRCLDKINEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             TCCSTTTCEEEECSSCEEEECCTTEESSSSC
T ss_pred             CCCCCCCcEEECCCCCeEEECCCCCCCCCcC
Confidence            455555 5555   45666666666666653

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.9e-06  Score=45.47  Aligned_cols=14  Identities=50%  Similarity=1.433  Sum_probs=5.6

Q ss_pred             CceeCCCCcccCCC
Q psy9568          99 NKCRCPPGFLGDYC  112 (248)
Q Consensus        99 ~~C~C~~g~~g~~C  112 (248)
                      |+|.|++||+|..|
T Consensus        21 y~C~C~~g~~G~~C   34 (35)
T d2vj3a3          21 FQCECPTGFTGHLC   34 (35)
T ss_dssp             EEEECCTTEESSSS
T ss_pred             eEEECCCCCCCCCc
Confidence            33444444444333

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.7e-06  Score=47.68  Aligned_cols=14  Identities=36%  Similarity=1.096  Sum_probs=5.6

Q ss_pred             CceeCCCCcccCCC
Q psy9568          99 NKCRCPPGFLGDYC  112 (248)
Q Consensus        99 ~~C~C~~g~~g~~C  112 (248)
                      |+|.|++||+|+.|
T Consensus        26 y~C~C~~G~~G~~C   39 (42)
T d2vj3a1          26 FECQCLQGYTGPRC   39 (42)
T ss_dssp             EEEECCTTEESTTS
T ss_pred             EEeECCCCCcCCCC
Confidence            33444444444433

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3.8e-06  Score=46.72  Aligned_cols=30  Identities=43%  Similarity=1.062  Sum_probs=21.5

Q ss_pred             CcCCCCCCEeec-----CCceeeCCCCcCCCCCcC
Q psy9568          22 TEKCLNGGKCVQ-----KDTCECQKGFYGLRCEFC   51 (248)
Q Consensus        22 ~~~C~~~g~C~~-----~~~C~C~~G~~G~~C~~~   51 (248)
                      +++|.|+|+|+.     .+.|.|++||+|++|+++
T Consensus         3 ~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~~   37 (41)
T d1tpga1           3 EPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEID   37 (41)
T ss_dssp             SCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBC
T ss_pred             CCCCCCCCEEecCCCCCCeEECCCCCCCCCCcCcC
Confidence            357888888873     256888888888888754

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=6.6e-07  Score=49.36  Aligned_cols=28  Identities=36%  Similarity=0.846  Sum_probs=18.5

Q ss_pred             CCCCCC-CccC---CCCeeecCCCCccCCCCC
Q psy9568         160 PKPCKQ-GVCS---AARTCACYEGWFGRTCSQ  187 (248)
Q Consensus       160 ~~~C~~-g~C~---~~~~C~C~~g~~G~~C~~  187 (248)
                      +++|.| |+|+   +.|+|.|++||+|..|++
T Consensus         6 ~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~   37 (39)
T d1g1ta2           6 NTSCSGHGECVETINNYTCKCDPGFSGLKCEQ   37 (39)
T ss_dssp             TTGGGGSEEEEEETTEEEEEECTTEESTTSCE
T ss_pred             CCcCCCCcEEECCCCCEEEeCCCCCcCcCcCc
Confidence            456655 6665   566777777777777764

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.3e-06  Score=48.11  Aligned_cols=27  Identities=48%  Similarity=1.168  Sum_probs=18.4

Q ss_pred             CCCCCCEeecC---CceeeCCCCcCCCCCc
Q psy9568          24 KCLNGGKCVQK---DTCECQKGFYGLRCEF   50 (248)
Q Consensus        24 ~C~~~g~C~~~---~~C~C~~G~~G~~C~~   50 (248)
                      +|.++|.|++.   +.|.|++||+|+.|+.
T Consensus         8 pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~   37 (39)
T d1g1ta2           8 SCSGHGECVETINNYTCKCDPGFSGLKCEQ   37 (39)
T ss_dssp             GGGGSEEEEEETTEEEEEECTTEESTTSCE
T ss_pred             cCCCCcEEECCCCCEEEeCCCCCcCcCcCc
Confidence            67777777642   5677777777777764

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1.6e-06  Score=48.04  Aligned_cols=28  Identities=36%  Similarity=1.055  Sum_probs=17.3

Q ss_pred             CCCCCC-CccC---CCCeeecCCCCccCCCCC
Q psy9568         160 PKPCKQ-GVCS---AARTCACYEGWFGRTCSQ  187 (248)
Q Consensus       160 ~~~C~~-g~C~---~~~~C~C~~g~~G~~C~~  187 (248)
                      +++|.| |+|+   +.|+|.|++||+|..|+.
T Consensus         6 ~~pC~ngg~C~~~~~~y~C~C~~g~~G~~Ce~   37 (40)
T d1g1sa2           6 DMSCSKQGECLETIGNYTCSCYPGFYGPECEY   37 (40)
T ss_dssp             TTGGGGSEEEEECSSSEEEEECTTEESTTSCE
T ss_pred             CCcCCCCcEEECCCCCeEEeCCCCccCCCCCC
Confidence            455654 5565   556666666677666654

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=5.4e-06  Score=45.80  Aligned_cols=15  Identities=53%  Similarity=1.285  Sum_probs=6.7

Q ss_pred             CceeCCCCcccCCCC
Q psy9568          99 NKCRCPPGFLGDYCE  113 (248)
Q Consensus        99 ~~C~C~~g~~g~~C~  113 (248)
                      |+|.|++||+|+.|+
T Consensus        22 y~C~C~~g~~G~~Ce   36 (40)
T d1g1sa2          22 YTCSCYPGFYGPECE   36 (40)
T ss_dssp             EEEEECTTEESTTSC
T ss_pred             eEEeCCCCccCCCCC
Confidence            444444444444444

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=2e-05  Score=45.20  Aligned_cols=31  Identities=29%  Similarity=0.850  Sum_probs=17.3

Q ss_pred             CCCCc-CCCCCCEeec---CCceeeCCCCcCCCCCc
Q psy9568          19 GICTE-KCLNGGKCVQ---KDTCECQKGFYGLRCEF   50 (248)
Q Consensus        19 ~~C~~-~C~~~g~C~~---~~~C~C~~G~~G~~C~~   50 (248)
                      +.|.+ +|.+ |.|++   .|.|.|++||+|+.|+.
T Consensus         9 ~~C~~~PC~n-G~C~~~~~~y~C~C~~G~~G~~Ce~   43 (48)
T d1autl1           9 HPCASLCCGH-GTCIDGIGSFSCDCRSGWEGRFCQR   43 (48)
T ss_dssp             CSSSSTTTTS-EEECCCSSCCCEEECTTEESTTSCE
T ss_pred             CcccCCCCCC-CEEECCCCCCeEeCCCCCcCCCccc
Confidence            34444 5644 56654   25666666666666653

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=97.44  E-value=2.6e-05  Score=43.41  Aligned_cols=15  Identities=33%  Similarity=1.054  Sum_probs=6.6

Q ss_pred             CceeCCC-CcccCCCC
Q psy9568          99 NKCRCPP-GFLGDYCE  113 (248)
Q Consensus        99 ~~C~C~~-g~~g~~C~  113 (248)
                      |.|.|.. ||+|..|+
T Consensus        24 y~C~C~~~G~~G~~Ce   39 (42)
T d1q4ga2          24 YQCDCTRTGYSGPNCT   39 (42)
T ss_dssp             EEEECTTSSEETTTTC
T ss_pred             EEEECCCCCcCCcCcC
Confidence            3444433 44444444

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=97.43  E-value=1.4e-05  Score=44.64  Aligned_cols=27  Identities=33%  Similarity=1.016  Sum_probs=13.8

Q ss_pred             CCCCCC-CccC----CCCeeecCC-CCccCCCC
Q psy9568         160 PKPCKQ-GVCS----AARTCACYE-GWFGRTCS  186 (248)
Q Consensus       160 ~~~C~~-g~C~----~~~~C~C~~-g~~G~~C~  186 (248)
                      +++|.| |+|+    +.|+|.|++ ||+|..|+
T Consensus         7 ~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce   39 (42)
T d1q4ga2           7 YYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT   39 (42)
T ss_dssp             GCCCCTTCEEEEETTTEEEEECTTSSEETTTTC
T ss_pred             CCCCCCCCEeeeCCCCCEEEECCCCCcCCcCcC
Confidence            345554 4553    345555643 56665554

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=2.2e-05  Score=43.52  Aligned_cols=28  Identities=32%  Similarity=1.089  Sum_probs=15.7

Q ss_pred             CCCCCC-CccC----CCCeeecC-CCCccCCCCC
Q psy9568         160 PKPCKQ-GVCS----AARTCACY-EGWFGRTCSQ  187 (248)
Q Consensus       160 ~~~C~~-g~C~----~~~~C~C~-~g~~G~~C~~  187 (248)
                      +++|.| |+|+    +.|+|.|+ +||+|..|++
T Consensus         6 ~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce~   39 (41)
T d1cvua2           6 SNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT   39 (41)
T ss_dssp             TCCCCTTCEEEEEETTEEEEECTTSSEETTTTCE
T ss_pred             CCCCCCCCEEEECCCCCEEEeCcCCCcCCcCcCc
Confidence            455555 5554    34566664 4666666653

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=5.7e-05  Score=41.74  Aligned_cols=15  Identities=47%  Similarity=1.278  Sum_probs=6.7

Q ss_pred             CceeCC-CCcccCCCC
Q psy9568          99 NKCRCP-PGFLGDYCE  113 (248)
Q Consensus        99 ~~C~C~-~g~~g~~C~  113 (248)
                      |+|.|+ +||+|..|+
T Consensus        23 y~C~C~~~gy~G~~Ce   38 (41)
T d1cvua2          23 YKCDCTRTGFYGENCT   38 (41)
T ss_dssp             EEEECTTSSEETTTTC
T ss_pred             EEEeCcCCCcCCcCcC
Confidence            344443 344444444

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.00021  Score=41.74  Aligned_cols=28  Identities=36%  Similarity=0.850  Sum_probs=15.9

Q ss_pred             CCCCCC-CccC-----CCCeeecCCCCccCCCCC
Q psy9568         160 PKPCKQ-GVCS-----AARTCACYEGWFGRTCSQ  187 (248)
Q Consensus       160 ~~~C~~-g~C~-----~~~~C~C~~g~~G~~C~~  187 (248)
                      +++|.| |+|.     ..++|.|++||+|.+|+.
T Consensus        11 ~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~   44 (53)
T d3egfa_          11 DGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT   44 (53)
T ss_dssp             SCCSCSSCEEEEESSSSCEEEECCTTCCSSSSCC
T ss_pred             CCCCCCCcEeeccCCCCCeEeECCCCCcCCCCcc
Confidence            345555 5553     345666666666666654

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.98  E-value=0.00021  Score=41.79  Aligned_cols=27  Identities=48%  Similarity=1.125  Sum_probs=20.7

Q ss_pred             CCCCCCEeec-----CCceeeCCCCcCCCCCc
Q psy9568          24 KCLNGGKCVQ-----KDTCECQKGFYGLRCEF   50 (248)
Q Consensus        24 ~C~~~g~C~~-----~~~C~C~~G~~G~~C~~   50 (248)
                      +|.++|+|..     .+.|+|++||+|++|+.
T Consensus        13 ~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~   44 (53)
T d3egfa_          13 YCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT   44 (53)
T ss_dssp             CSCSSCEEEEESSSSCEEEECCTTCCSSSSCC
T ss_pred             CCCCCcEeeccCCCCCeEeECCCCCcCCCCcc
Confidence            6888888852     36788888888888874

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00019  Score=43.59  Aligned_cols=21  Identities=24%  Similarity=0.673  Sum_probs=14.5

Q ss_pred             CCeeecCCCCccCCCCCCCCC
Q psy9568         171 ARTCACYEGWFGRTCSQRSDS  191 (248)
Q Consensus       171 ~~~C~C~~g~~G~~C~~~~~~  191 (248)
                      .|.|.|++||+|.+|+..+..
T Consensus        31 ~y~C~C~~gy~G~~Ce~~~~~   51 (63)
T d1haea_          31 RYLCKCQPGFTGARCTENVPM   51 (63)
T ss_dssp             CEEEECCTTEESTTSCEECCS
T ss_pred             CEEeECCCCCCCCCcCCCCCc
Confidence            567777777777777765544

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0007  Score=41.00  Aligned_cols=30  Identities=40%  Similarity=0.921  Sum_probs=20.6

Q ss_pred             CCCCCCceec--------CCCceeCCCCcccCCCCccC
Q psy9568          87 IPCLNGGRCK--------GVNKCRCPPGFLGDYCEIWQ  116 (248)
Q Consensus        87 ~~C~~~g~C~--------~~~~C~C~~g~~g~~C~~~~  116 (248)
                      .+|.|+|+|.        +.|.|.|++||+|..|+...
T Consensus        12 ~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce~~~   49 (63)
T d1haea_          12 TFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV   49 (63)
T ss_dssp             TTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEEC
T ss_pred             CcCCCCCEEeecccccCCCCEEeECCCCCCCCCcCCCC
Confidence            5677777773        24677788888888777543

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00024  Score=40.61  Aligned_cols=27  Identities=41%  Similarity=1.116  Sum_probs=19.6

Q ss_pred             CCCCCCEeec-----CCceeeCCCCcCCCCCc
Q psy9568          24 KCLNGGKCVQ-----KDTCECQKGFYGLRCEF   50 (248)
Q Consensus        24 ~C~~~g~C~~-----~~~C~C~~G~~G~~C~~   50 (248)
                      +|.|+|.|..     .+.|.|++||+|++|+.
T Consensus        11 ~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce~   42 (48)
T d1nqlb_          11 YCLHDGVCMYIEALDKYACNCVVGYIGERCQY   42 (48)
T ss_dssp             EECTTCEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred             CCCCCcEEeeeCCCCCeEEeCCCCcccCCCCc
Confidence            6778888852     25788888888888863

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00021  Score=40.87  Aligned_cols=29  Identities=34%  Similarity=0.882  Sum_probs=21.6

Q ss_pred             CCCCCC-CccC-----CCCeeecCCCCccCCCCCC
Q psy9568         160 PKPCKQ-GVCS-----AARTCACYEGWFGRTCSQR  188 (248)
Q Consensus       160 ~~~C~~-g~C~-----~~~~C~C~~g~~G~~C~~~  188 (248)
                      +++|.| |+|.     ..+.|.|++||+|.+|+..
T Consensus         9 ~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce~~   43 (48)
T d1nqlb_           9 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR   43 (48)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred             CCCCCCCcEEeeeCCCCCeEEeCCCCcccCCCCcC
Confidence            456766 7774     3578999999999988753

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00039  Score=37.98  Aligned_cols=21  Identities=38%  Similarity=1.029  Sum_probs=11.0

Q ss_pred             CCeecCCCceeeCCCCccCCCC
Q psy9568          60 GGKCVQKDTCECQKGFYGLRCE   81 (248)
Q Consensus        60 ~g~C~~~~~C~C~~g~~G~~C~   81 (248)
                      +|+|+. +.|+|.+||+|..|+
T Consensus        20 hG~C~~-G~C~C~~Gw~G~~Ce   40 (41)
T d1l3ya_          20 RGLCFC-GKCRCHPGFEGSACQ   40 (41)
T ss_dssp             HEEEET-TEEEECTTCCTTTTC
T ss_pred             CCeEEC-CEEEcCCCCcccCcc
Confidence            455554 455555555555553

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00042  Score=39.03  Aligned_cols=28  Identities=29%  Similarity=0.752  Sum_probs=22.0

Q ss_pred             CCCCCCCccC-----CCCeeecCCCCccCCCCC
Q psy9568         160 PKPCKQGVCS-----AARTCACYEGWFGRTCSQ  187 (248)
Q Consensus       160 ~~~C~~g~C~-----~~~~C~C~~g~~G~~C~~  187 (248)
                      .+.|.||.|.     ..+.|.|++||+|.+|+.
T Consensus        11 ~~yC~nG~C~~~~~~~~~~C~C~~gY~G~RCe~   43 (46)
T d1k36a_          11 NGYCLHGQCIYLVDMSQNYCRCEVGYTGVRCEH   43 (46)
T ss_dssp             CSSCSSEEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred             CCcCcCCEEEEeCCCCccEeECCCCceecCcee
Confidence            4678888774     457899999999999874

>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00036  Score=34.75  Aligned_cols=25  Identities=28%  Similarity=0.846  Sum_probs=18.7

Q ss_pred             CCCCCCEeecCCceeeCCCCcCCCCC
Q psy9568          24 KCLNGGKCVQKDTCECQKGFYGLRCE   49 (248)
Q Consensus        24 ~C~~~g~C~~~~~C~C~~G~~G~~C~   49 (248)
                      .|++||.|.= +.|+|.+||+|..|.
T Consensus         4 ~C~ghG~C~C-G~C~C~~gw~G~~CN   28 (31)
T d1jv2b4           4 MCSGHGQCSC-GDCLCDSDWTGYYCN   28 (31)
T ss_dssp             CSCCCTTCCS-TTTCCCTTEESSSSC
T ss_pred             eccCCCcccC-CceEccCCccccccc
Confidence            4677777775 678888888888774

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.00085  Score=35.04  Aligned_cols=27  Identities=52%  Similarity=1.218  Sum_probs=13.3

Q ss_pred             CCCCCceeeC------CCeeeCCCCCCCCCCCc
Q psy9568         126 PCLNGGRCKG------VNKCRCPPGFLGDYCEI  152 (248)
Q Consensus       126 ~C~~~g~C~~------~~~C~C~~g~~g~~C~~  152 (248)
                      .|.|+|.|+.      ..+|.|+.+|.|.+|++
T Consensus         3 ~ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCEi   35 (40)
T d2i9aa1           3 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEI   35 (40)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCE
T ss_pred             ccccCCEEEEEehhcCCEEecCCcccCceeEEe
Confidence            3556666652      12455555555555543

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.001  Score=36.22  Aligned_cols=22  Identities=36%  Similarity=0.989  Sum_probs=20.0

Q ss_pred             CCCEeecCCceeeCCCCcCCCCC
Q psy9568          27 NGGKCVQKDTCECQKGFYGLRCE   49 (248)
Q Consensus        27 ~~g~C~~~~~C~C~~G~~G~~C~   49 (248)
                      .+|+|+. +.|+|.+||+|+.|+
T Consensus        19 ~hG~C~~-G~C~C~~Gw~G~~Ce   40 (41)
T d1l3ya_          19 GRGLCFC-GKCRCHPGFEGSACQ   40 (41)
T ss_dssp             HHEEEET-TEEEECTTCCTTTTC
T ss_pred             CCCeEEC-CEEEcCCCCcccCcc
Confidence            4799997 899999999999986

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.76  E-value=0.0012  Score=35.97  Aligned_cols=24  Identities=21%  Similarity=0.576  Sum_probs=18.4

Q ss_pred             cCCCCCCEeecC---CceeeCCCCcCC
Q psy9568          23 EKCLNGGKCVQK---DTCECQKGFYGL   46 (248)
Q Consensus        23 ~~C~~~g~C~~~---~~C~C~~G~~G~   46 (248)
                      +.|+.++.|+++   |.|.|++||+|.
T Consensus         7 ~~C~~~A~C~Nt~Gsy~C~C~~Gy~Gd   33 (40)
T d1gl4a2           7 HQCSVHAECRDYATGFCCRCVANYTGN   33 (40)
T ss_dssp             GGSCTTEEEEECSSCEEEEECTTEEEC
T ss_pred             CCCCCCCEeecCCCCeEeECCCCCcCC
Confidence            367888888864   688888888864

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.003  Score=32.91  Aligned_cols=26  Identities=54%  Similarity=1.274  Sum_probs=14.6

Q ss_pred             CCCCceecC------CCceeCCCCcccCCCCc
Q psy9568          89 CLNGGRCKG------VNKCRCPPGFLGDYCEI  114 (248)
Q Consensus        89 C~~~g~C~~------~~~C~C~~g~~g~~C~~  114 (248)
                      |.|+|+|+.      -.+|.|+.+|.|..|++
T Consensus         4 ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCEi   35 (40)
T d2i9aa1           4 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEI   35 (40)
T ss_dssp             CCTTCEEEECSSSTTCEEEECCTTEESTTSCE
T ss_pred             cccCCEEEEEehhcCCEEecCCcccCceeEEe
Confidence            566666651      12466666666666654

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0015  Score=36.29  Aligned_cols=25  Identities=32%  Similarity=0.768  Sum_probs=19.2

Q ss_pred             CCCCCCCccC---CCCeeecCCCCccCC
Q psy9568         160 PKPCKQGVCS---AARTCACYEGWFGRT  184 (248)
Q Consensus       160 ~~~C~~g~C~---~~~~C~C~~g~~G~~  184 (248)
                      +..|.++.|+   ++|.|.|++||.+..
T Consensus        10 ~~~C~~~~C~Nt~Gsy~C~C~~Gy~~~~   37 (44)
T d1lmja1          10 PDLCGRGQCVNTPGDFECKCDEGYESGF   37 (44)
T ss_dssp             SSTTTTSCEEEETTEEEECCCSSEEECT
T ss_pred             CCCCCCCEeEcCCCCeEEeCCCCCccCC
Confidence            3446667787   899999999998753

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0026  Score=34.64  Aligned_cols=27  Identities=33%  Similarity=0.908  Sum_probs=21.0

Q ss_pred             CCCCCCCccC-----CCCeeecCCCCccCCCC
Q psy9568         160 PKPCKQGVCS-----AARTCACYEGWFGRTCS  186 (248)
Q Consensus       160 ~~~C~~g~C~-----~~~~C~C~~g~~G~~C~  186 (248)
                      .+-|.||+|.     ....|.|+.||+|.+|+
T Consensus         7 ~~yCihG~C~~i~~l~~~~C~C~~gY~G~RCq   38 (41)
T d1xdtr_           7 KDFCIHGECKYVKELRAPSCICHPGYHGERCH   38 (41)
T ss_dssp             TTCCSSEEECCBGGGTBCCEEECTTEESTTCC
T ss_pred             CCEeECcEEeecCcCCCceeECCCCCeecCcc
Confidence            3557778886     56789999999999886

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0029  Score=34.67  Aligned_cols=25  Identities=44%  Similarity=0.957  Sum_probs=21.2

Q ss_pred             CCCCCEeecCCceeeC-CCCcCCCCCc
Q psy9568          25 CLNGGKCVQKDTCECQ-KGFYGLRCEF   50 (248)
Q Consensus        25 C~~~g~C~~~~~C~C~-~G~~G~~C~~   50 (248)
                      |+.+|.|+- +.|+|. +||+|+.|+.
T Consensus        13 Cng~G~C~c-G~C~C~~~gy~G~~Ce~   38 (43)
T d1jv2b5          13 CSGRGKCEC-GSCVCIQPGSYGDTCEK   38 (43)
T ss_dssp             GGGTEEEET-TEEEECCSSCBSTTSCB
T ss_pred             ECCCCEEEC-CEeEeCCCCccCCcccc
Confidence            888899986 889994 7999999985

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0042  Score=34.23  Aligned_cols=18  Identities=28%  Similarity=0.720  Sum_probs=13.9

Q ss_pred             CCccC---CCCeeecCCCCcc
Q psy9568         165 QGVCS---AARTCACYEGWFG  182 (248)
Q Consensus       165 ~g~C~---~~~~C~C~~g~~G  182 (248)
                      ++.|+   ++|.|.|++||++
T Consensus        16 ~~~C~Nt~Gsy~C~C~~Gy~~   36 (43)
T d1emoa1          16 HGQCINTDGSYRCECPFGYIL   36 (43)
T ss_dssp             SSCCCCCSSCCCCCCCTTEEE
T ss_pred             CCEeECCCCCeEeECCCCccc
Confidence            45665   7899999999974

>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0025  Score=31.65  Aligned_cols=25  Identities=28%  Similarity=0.846  Sum_probs=15.7

Q ss_pred             CCCCCCeecCCCceeeCCCCccCCCC
Q psy9568          56 KCLNGGKCVQKDTCECQKGFYGLRCE   81 (248)
Q Consensus        56 ~C~~~g~C~~~~~C~C~~g~~G~~C~   81 (248)
                      .|.++|.|.- +.|+|.+||.|..|.
T Consensus         4 ~C~ghG~C~C-G~C~C~~gw~G~~CN   28 (31)
T d1jv2b4           4 MCSGHGQCSC-GDCLCDSDWTGYYCN   28 (31)
T ss_dssp             CSCCCTTCCS-TTTCCCTTEESSSSC
T ss_pred             eccCCCcccC-CceEccCCccccccc
Confidence            3556666654 566777777776664

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.003  Score=35.88  Aligned_cols=28  Identities=29%  Similarity=0.889  Sum_probs=19.9

Q ss_pred             CCCCCCCccC-----CCCeeecCCCCccCCCCC
Q psy9568         160 PKPCKQGVCS-----AARTCACYEGWFGRTCSQ  187 (248)
Q Consensus       160 ~~~C~~g~C~-----~~~~C~C~~g~~G~~C~~  187 (248)
                      .+.|.||.|.     ..+.|.|++||+|.+|+.
T Consensus        12 ~~yClnGgcc~~~~~~~~~C~C~~gy~G~RCe~   44 (49)
T d1moxc_          12 TQFCFHGTCRFLVQEDKPACVCHSGYVGARCEH   44 (49)
T ss_dssp             SCSSTTEEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred             CCEeeCCeEEecCCCCCcEeECCCCCEecCCcc
Confidence            3557774442     456889999999998864

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0019  Score=35.57  Aligned_cols=23  Identities=35%  Similarity=0.804  Sum_probs=18.3

Q ss_pred             CCCCCCCccC---CCCeeecCCCCcc
Q psy9568         160 PKPCKQGVCS---AARTCACYEGWFG  182 (248)
Q Consensus       160 ~~~C~~g~C~---~~~~C~C~~g~~G  182 (248)
                      +..|.++.|+   ++|.|.|++||+.
T Consensus         9 ~~~C~~~~C~Nt~Gsy~C~C~~Gy~l   34 (42)
T d1lmja2           9 PLLCRGGVCHNTEGSYRCECPPGHQL   34 (42)
T ss_dssp             SSTTTTSEEEEETTEEEEESCTTSCC
T ss_pred             CCCCCCCEeECCCCCeEEeCCCCCeE
Confidence            4456667887   8999999999984

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.0045  Score=35.28  Aligned_cols=27  Identities=33%  Similarity=0.986  Sum_probs=17.7

Q ss_pred             CCCCCCccC-----CCCeeecCCCCccCCCCC
Q psy9568         161 KPCKQGVCS-----AARTCACYEGWFGRTCSQ  187 (248)
Q Consensus       161 ~~C~~g~C~-----~~~~C~C~~g~~G~~C~~  187 (248)
                      +.|.||.|.     ..+.|.|+.||+|.+|+.
T Consensus        14 ~yC~nGgcc~~~~~~~~~C~C~~gy~G~rCe~   45 (50)
T d1ioxa_          14 HYCIKGRCRFVVAEQTPSCVCDEGYIGARCER   45 (50)
T ss_dssp             TSCTTCCEEEETTTTEEEECCCTTEETTTTCE
T ss_pred             CCccCCeEEEeCCCCCcEeECCCCCeeCCCcc
Confidence            456664332     456788888888888864

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.0075  Score=33.64  Aligned_cols=26  Identities=42%  Similarity=1.266  Sum_probs=17.7

Q ss_pred             CCCCCCEee--c---CCceeeCCCCcCCCCCc
Q psy9568          24 KCLNGGKCV--Q---KDTCECQKGFYGLRCEF   50 (248)
Q Consensus        24 ~C~~~g~C~--~---~~~C~C~~G~~G~~C~~   50 (248)
                      .|.+ |.|.  .   .+.|.|++||+|.+|+.
T Consensus        13 yC~n-G~C~~~~~~~~~~C~C~~gY~G~RCe~   43 (46)
T d1k36a_          13 YCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEH   43 (46)
T ss_dssp             SCSS-EEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred             cCcC-CEEEEeCCCCccEeECCCCceecCcee
Confidence            5766 6663  1   25688888888888863

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.0085  Score=34.07  Aligned_cols=28  Identities=29%  Similarity=0.683  Sum_probs=16.4

Q ss_pred             CCCCCCceec----CCCceeCCCCcccCCCCc
Q psy9568          87 IPCLNGGRCK----GVNKCRCPPGFLGDYCEI  114 (248)
Q Consensus        87 ~~C~~~g~C~----~~~~C~C~~g~~g~~C~~  114 (248)
                      ..|.+++.|.    ..+.|.|+.||+|..|+.
T Consensus        14 ~yC~nGgcc~~~~~~~~~C~C~~gy~G~rCe~   45 (50)
T d1ioxa_          14 HYCIKGRCRFVVAEQTPSCVCDEGYIGARCER   45 (50)
T ss_dssp             TSCTTCCEEEETTTTEEEECCCTTEETTTTCE
T ss_pred             CCccCCeEEEeCCCCCcEeECCCCCeeCCCcc
Confidence            3466666553    224666667777766664

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.002  Score=35.65  Aligned_cols=20  Identities=30%  Similarity=0.926  Sum_probs=11.9

Q ss_pred             CCCCccC---CCCeeecCCCCcc
Q psy9568         163 CKQGVCS---AARTCACYEGWFG  182 (248)
Q Consensus       163 C~~g~C~---~~~~C~C~~g~~G  182 (248)
                      |.++.|+   ++|.|.|++||+.
T Consensus        13 c~~~~C~Nt~Gsy~C~C~~Gy~l   35 (43)
T d1uzka2          13 CQGGKCINTFGSFQCRCPTGYYL   35 (43)
T ss_dssp             GBTSEEEECSSCEEEECCTTCCB
T ss_pred             cCCCEEECCCCCeEeECCCCCeE
Confidence            3345555   5667777777663

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.014  Score=31.78  Aligned_cols=26  Identities=42%  Similarity=0.893  Sum_probs=22.0

Q ss_pred             CCCCCCeecCCCceeeC-CCCccCCCCc
Q psy9568          56 KCLNGGKCVQKDTCECQ-KGFYGLRCEF   82 (248)
Q Consensus        56 ~C~~~g~C~~~~~C~C~-~g~~G~~C~~   82 (248)
                      .|+++|+|+- +.|+|. +||.|..|+.
T Consensus        12 iCng~G~C~c-G~C~C~~~gy~G~~Ce~   38 (43)
T d1jv2b5          12 LCSGRGKCEC-GSCVCIQPGSYGDTCEK   38 (43)
T ss_dssp             GGGGTEEEET-TEEEECCSSCBSTTSCB
T ss_pred             EECCCCEEEC-CEeEeCCCCccCCcccc
Confidence            4888899986 899994 7999999984

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.0081  Score=34.00  Aligned_cols=28  Identities=29%  Similarity=0.656  Sum_probs=18.8

Q ss_pred             CCCCCCceec----CCCceeCCCCcccCCCCc
Q psy9568          87 IPCLNGGRCK----GVNKCRCPPGFLGDYCEI  114 (248)
Q Consensus        87 ~~C~~~g~C~----~~~~C~C~~g~~g~~C~~  114 (248)
                      ..|.|+|.|.    ..+.|.|++||+|.+|+.
T Consensus        13 ~yClnGgcc~~~~~~~~~C~C~~gy~G~RCe~   44 (49)
T d1moxc_          13 QFCFHGTCRFLVQEDKPACVCHSGYVGARCEH   44 (49)
T ss_dssp             CSSTTEEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred             CEeeCCeEEecCCCCCcEeECCCCCEecCCcc
Confidence            3466666663    235788888888888775

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.017  Score=31.27  Aligned_cols=24  Identities=38%  Similarity=1.190  Sum_probs=16.7

Q ss_pred             CCCCCEee-----cCCceeeCCCCcCCCCC
Q psy9568          25 CLNGGKCV-----QKDTCECQKGFYGLRCE   49 (248)
Q Consensus        25 C~~~g~C~-----~~~~C~C~~G~~G~~C~   49 (248)
                      |.+ |.|.     +...|+|+.||+|.+|+
T Consensus        10 Cih-G~C~~i~~l~~~~C~C~~gY~G~RCq   38 (41)
T d1xdtr_          10 CIH-GECKYVKELRAPSCICHPGYHGERCH   38 (41)
T ss_dssp             CSS-EEECCBGGGTBCCEEECTTEESTTCC
T ss_pred             eEC-cEEeecCcCCCceeECCCCCeecCcc
Confidence            554 7774     13578888888888875

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.30  E-value=0.011  Score=31.95  Aligned_cols=23  Identities=22%  Similarity=0.609  Sum_probs=15.9

Q ss_pred             CCCCCCeecC---CCceeeCCCCccC
Q psy9568          56 KCLNGGKCVQ---KDTCECQKGFYGL   78 (248)
Q Consensus        56 ~C~~~g~C~~---~~~C~C~~g~~G~   78 (248)
                      .|..+++|++   +|.|.|.+||.|+
T Consensus         8 ~C~~~A~C~Nt~Gsy~C~C~~Gy~Gd   33 (40)
T d1gl4a2           8 QCSVHAECRDYATGFCCRCVANYTGN   33 (40)
T ss_dssp             GSCTTEEEEECSSCEEEEECTTEEEC
T ss_pred             CCCCCCEeecCCCCeEeECCCCCcCC
Confidence            4666777776   4577888887753

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.012  Score=32.30  Aligned_cols=20  Identities=25%  Similarity=0.637  Sum_probs=15.7

Q ss_pred             CCCCccC---CCCeeecCCCCcc
Q psy9568         163 CKQGVCS---AARTCACYEGWFG  182 (248)
Q Consensus       163 C~~g~C~---~~~~C~C~~g~~G  182 (248)
                      +-++.|+   ++|.|.|++||..
T Consensus        12 ~c~~~C~Nt~G~y~C~C~~Gy~l   34 (43)
T d1uzka1          12 CISGNCVNTPGSYICDCPPDFEL   34 (43)
T ss_dssp             SBTSEEEEETTEEEEECCTTCEE
T ss_pred             CcCCEeECCCCCEEEecCCCCEE
Confidence            3356776   7899999999974

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.014  Score=30.08  Aligned_cols=22  Identities=36%  Similarity=0.978  Sum_probs=19.6

Q ss_pred             CCCCCCCccC---CCCeeecCCCCc
Q psy9568         160 PKPCKQGVCS---AARTCACYEGWF  181 (248)
Q Consensus       160 ~~~C~~g~C~---~~~~C~C~~g~~  181 (248)
                      .++|.||+|.   +.+.|.|..||.
T Consensus         7 gnpCGnGTCtNviGgFec~C~~GFe   31 (39)
T d1emoa2           7 GNPCGNGTCKNVIGGFECTCEEGFE   31 (39)
T ss_dssp             TCSSSSSCEEECSSSEEECCSSSSC
T ss_pred             CCccCCceeeecccceEEeecCCcC
Confidence            5789999997   889999999997

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.045  Score=29.87  Aligned_cols=12  Identities=42%  Similarity=1.348  Sum_probs=7.3

Q ss_pred             CCCceeCCCCcc
Q psy9568          97 GVNKCRCPPGFL  108 (248)
Q Consensus        97 ~~~~C~C~~g~~  108 (248)
                      ++|.|.|++||.
T Consensus        24 Gsy~C~C~~Gy~   35 (43)
T d1emoa1          24 GSYRCECPFGYI   35 (43)
T ss_dssp             SCCCCCCCTTEE
T ss_pred             CCeEeECCCCcc
Confidence            456666666665

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.031  Score=30.71  Aligned_cols=13  Identities=31%  Similarity=0.912  Sum_probs=7.0

Q ss_pred             CCCceeCCCCccc
Q psy9568          97 GVNKCRCPPGFLG  109 (248)
Q Consensus        97 ~~~~C~C~~g~~g  109 (248)
                      ++|.|.|++||.+
T Consensus        23 Gsy~C~C~~Gy~~   35 (44)
T d1lmja1          23 GDFECKCDEGYES   35 (44)
T ss_dssp             TEEEECCCSSEEE
T ss_pred             CCeEEeCCCCCcc
Confidence            4455555555554

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.057  Score=29.26  Aligned_cols=21  Identities=38%  Similarity=0.828  Sum_probs=15.0

Q ss_pred             CCCCCCEeecC---CceeeCCCCcC
Q psy9568          24 KCLNGGKCVQK---DTCECQKGFYG   45 (248)
Q Consensus        24 ~C~~~g~C~~~---~~C~C~~G~~G   45 (248)
                      .|. +|+|+++   |.|.|++||+.
T Consensus        11 ~C~-~~~C~Nt~Gsy~C~C~~Gy~l   34 (42)
T d1lmja2          11 LCR-GGVCHNTEGSYRCECPPGHQL   34 (42)
T ss_dssp             TTT-TSEEEEETTEEEEESCTTSCC
T ss_pred             CCC-CCEeECCCCCeEEeCCCCCeE
Confidence            353 5788863   68888888873

>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.21  E-value=0.078  Score=29.98  Aligned_cols=15  Identities=27%  Similarity=0.760  Sum_probs=8.9

Q ss_pred             CceeeCCCCcCCCCC
Q psy9568          35 DTCECQKGFYGLRCE   49 (248)
Q Consensus        35 ~~C~C~~G~~G~~C~   49 (248)
                      ++|.|.+++.|+.|+
T Consensus        20 GqC~Ck~~v~G~~Cd   34 (51)
T d1kloa3          20 GQCQCLPHVSGRDCG   34 (51)
T ss_dssp             CCCCBCTTEESTTCC
T ss_pred             CeecCCCCCcCCCcc
Confidence            556666666666555

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.37  E-value=0.039  Score=29.56  Aligned_cols=13  Identities=15%  Similarity=0.145  Sum_probs=11.4

Q ss_pred             CCCeeecCCCCcc
Q psy9568         170 AARTCACYEGWFG  182 (248)
Q Consensus       170 ~~~~C~C~~g~~G  182 (248)
                      ++|+|.|++||+.
T Consensus        20 Gsy~C~C~~Gy~l   32 (40)
T d1dx5i3          20 GTFECICGPDSAL   32 (40)
T ss_dssp             SSEEEEECSSSSC
T ss_pred             CCeEeECCCCCee
Confidence            6899999999985

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.11  E-value=0.16  Score=29.06  Aligned_cols=13  Identities=46%  Similarity=1.142  Sum_probs=8.0

Q ss_pred             CCCCcccCCCCcc
Q psy9568         103 CPPGFLGDYCEIW  115 (248)
Q Consensus       103 C~~g~~g~~C~~~  115 (248)
                      |.++|+|+.|+.-
T Consensus        23 C~~~~~G~~Ce~C   35 (55)
T d1kloa1          23 CPTGTAGKRCELC   35 (55)
T ss_dssp             CCTTEESTTSCEE
T ss_pred             CCCCCccCccccc
Confidence            6666666666643

>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.98  E-value=0.21  Score=28.68  Aligned_cols=15  Identities=27%  Similarity=0.738  Sum_probs=8.5

Q ss_pred             Ccee-eCCCCcCCCCC
Q psy9568          35 DTCE-CQKGFYGLRCE   49 (248)
Q Consensus        35 ~~C~-C~~G~~G~~C~   49 (248)
                      ++|. |.++..|++|+
T Consensus        20 G~C~~C~~nt~G~~Cd   35 (56)
T d1kloa2          20 GECLKCIYNTAGFYCD   35 (56)
T ss_dssp             CCBCCBCTTEETTTTC
T ss_pred             CCCCCCCCCCCCCCcC
Confidence            5553 66666666555

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.56  E-value=0.2  Score=28.36  Aligned_cols=13  Identities=23%  Similarity=0.544  Sum_probs=11.7

Q ss_pred             CCCeeecCCCCcc
Q psy9568         170 AARTCACYEGWFG  182 (248)
Q Consensus       170 ~~~~C~C~~g~~G  182 (248)
                      ++|.|.|++||+.
T Consensus        31 GsY~C~C~~Gy~l   43 (53)
T d1apqa_          31 GGYFCSCRPGYEL   43 (53)
T ss_dssp             TEEEEECSTTCEE
T ss_pred             CCeEeECCCCCeE
Confidence            7899999999983

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.05  E-value=0.48  Score=25.14  Aligned_cols=13  Identities=31%  Similarity=0.672  Sum_probs=11.5

Q ss_pred             CCCeeecCCCCcc
Q psy9568         170 AARTCACYEGWFG  182 (248)
Q Consensus       170 ~~~~C~C~~g~~G  182 (248)
                      ++|+|.|++||+-
T Consensus        19 Gsy~C~C~~Gy~L   31 (41)
T d1i0ua2          19 GGYKCQCEEGFQL   31 (41)
T ss_dssp             SCCEECCCTTEEE
T ss_pred             CCEEeECCCCCeE
Confidence            6899999999983