Psyllid ID: psy9570

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
MLSSTFRVNQQGFRLVRNLHQKRVSRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVGCKVAIEHGAEQAPFYKLMTDVIKVGCKVAIGVAK
cccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHcccc
ccccccccccccEEcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHEcccEEEEEEcc
MLSSTFRVNQQGFRLVRNLHQKRVSRQLDEIIRVDHAGELGADRIYAGQMavlgnssvapkIQEMWDQEKAHKAKFEELIRKYRvrptallpfwnVAGFILGAgsallgpkgamACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEeqehhdtglehgaeqapfYKLMTDVIKVGCKVAIEhgaeqapfYKLMTDVIKVGCKVAIGVAK
mlsstfrvnqqgfrlvrnlhqkrvsrqldeiIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVGCKVAIEHGAEQAPFYKLMTDVIKVGCKVAIGVAK
MLSSTFRVNQQGFRLVRNLHQKRVSRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVGCKVAIEHGAEQAPFYKLMTDVIKVGCKVAIGVAK
**********QGFRLVRNLHQKRVSRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMS*******LMDVIH*******************QAPFYKLMTDVIKVGCKVAIEHGAEQAPFYKLMTDVIKVGCKVAIGV**
*******************************IRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGL*HGAEQAPFYKLMTDVIKVGCKVAIEHGAEQAPFYKLMTDVIKVGCKVAIGVA*
********NQQGFRLVRNLHQKRVSRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVGCKVAIEHGAEQAPFYKLMTDVIKVGCKVAIGVAK
**********QGFRLVRNLHQKRVSRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVGCKVAIEHGAEQAPFYKLMTDVIKVGCKVAIGVAK
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLSSTFRVNQQGFRLVRNLHQKRVSRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVGCKVAIEHGAEQAPFYKLMTDVIKVGCKVAIGVAK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query218 2.2.26 [Sep-21-2011]
Q2TBW2217 Ubiquinone biosynthesis p no N/A 0.743 0.746 0.668 3e-59
P97478217 Ubiquinone biosynthesis p yes N/A 0.743 0.746 0.662 5e-59
Q99807217 Ubiquinone biosynthesis p yes N/A 0.743 0.746 0.650 4e-58
Q63619179 Ubiquinone biosynthesis p yes N/A 0.743 0.905 0.656 1e-57
Q54VB3217 Ubiquinone biosynthesis p yes N/A 0.802 0.806 0.562 8e-50
P48376187 Ubiquinone biosynthesis p yes N/A 0.811 0.946 0.516 1e-46
O74826216 Ubiquinone biosynthesis p yes N/A 0.756 0.763 0.532 8e-43
P41735233 Catabolite repression pro yes N/A 0.743 0.695 0.460 7e-36
Q7NSP9206 2-nonaprenyl-3-methyl-6-m yes N/A 0.637 0.674 0.295 3e-11
C1DHY3215 2-nonaprenyl-3-methyl-6-m yes N/A 0.729 0.739 0.280 6e-11
>sp|Q2TBW2|COQ7_BOVIN Ubiquinone biosynthesis protein COQ7 homolog OS=Bos taurus GN=COQ7 PE=2 SV=1 Back     alignment and function desciption
 Score =  228 bits (580), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/163 (66%), Positives = 125/163 (76%), Gaps = 1/163 (0%)

Query: 28  LDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRP 87
           +D IIRVDHAGE GA+RIYAGQMAVLG +S+ P IQ+MWDQEK H  KF EL+  +RVRP
Sbjct: 49  VDRIIRVDHAGEYGANRIYAGQMAVLGRTSIGPVIQKMWDQEKDHLKKFNELMVAFRVRP 108

Query: 88  TALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALM-SDPAANRELM 146
           T L+PFWNV GF LGAG+ALLG +GAMACTVAVE  I  HYN Q+R LM  +P    EL+
Sbjct: 109 TVLMPFWNVVGFALGAGTALLGKEGAMACTVAVEESIAHHYNNQIRTLMEKEPEKYEELL 168

Query: 147 DVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVGCKVAI 189
            VI KFRDEE EHHD GLEH AE AP Y ++  VI+ GCKVAI
Sbjct: 169 QVIKKFRDEELEHHDIGLEHDAELAPAYVVLKSVIQAGCKVAI 211
Involved in lifespan determination in ubiquinone-independent manner. Involved in ubiquinone biosynthesis. Potential central metabolic regulator.
Bos taurus (taxid: 9913)
>sp|P97478|COQ7_MOUSE Ubiquinone biosynthesis protein COQ7 homolog OS=Mus musculus GN=Coq7 PE=2 SV=3 Back     alignment and function description
>sp|Q99807|COQ7_HUMAN Ubiquinone biosynthesis protein COQ7 homolog OS=Homo sapiens GN=COQ7 PE=1 SV=3 Back     alignment and function description
>sp|Q63619|COQ7_RAT Ubiquinone biosynthesis protein COQ7 homolog (Fragment) OS=Rattus norvegicus GN=Coq7 PE=2 SV=3 Back     alignment and function description
>sp|Q54VB3|COQ7_DICDI Ubiquinone biosynthesis protein COQ7 homolog OS=Dictyostelium discoideum GN=coq7 PE=2 SV=1 Back     alignment and function description
>sp|P48376|COQ7_CAEEL Ubiquinone biosynthesis protein COQ7 homolog OS=Caenorhabditis elegans GN=clk-1 PE=1 SV=1 Back     alignment and function description
>sp|O74826|COQ7_SCHPO Ubiquinone biosynthesis protein coq7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=coq7 PE=3 SV=1 Back     alignment and function description
>sp|P41735|CAT5_YEAST Catabolite repression protein CAT5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAT5 PE=1 SV=2 Back     alignment and function description
>sp|Q7NSP9|COQ7_CHRVO 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=coq7 PE=3 SV=1 Back     alignment and function description
>sp|C1DHY3|COQ7_AZOVD 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=coq7 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query218
189014534189 ubiquinone biosynthesis protein [Gryllus 0.811 0.936 0.727 6e-74
189014524189 ubiquinone biosynthesis protein [Gryllus 0.807 0.931 0.731 7e-74
189014554189 ubiquinone biosynthesis protein [Gryllus 0.807 0.931 0.726 2e-73
189014536189 ubiquinone biosynthesis protein [Gryllus 0.807 0.931 0.726 4e-73
350399177195 PREDICTED: ubiquinone biosynthesis prote 0.844 0.943 0.686 6e-71
340714447195 PREDICTED: ubiquinone biosynthesis prote 0.834 0.933 0.688 1e-70
322796526192 hypothetical protein SINV_01453 [Solenop 0.844 0.958 0.675 5e-70
383863729195 PREDICTED: ubiquinone biosynthesis prote 0.844 0.943 0.664 2e-69
119115340191 AGAP000118-PA [Anopheles gambiae str. PE 0.825 0.942 0.685 5e-69
242247577193 ubiquinone biosynthesis protein COQ7 hom 0.788 0.891 0.695 8e-69
>gi|189014534|gb|ACD69503.1| ubiquinone biosynthesis protein [Gryllus pennsylvanicus] Back     alignment and taxonomy information
 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 150/180 (83%), Gaps = 3/180 (1%)

Query: 13  FRLVRNLHQKRVS---RQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQE 69
            R++R   Q+R+S   +Q+D IIRVDHAGELGADRIYAGQMAVLG SSV P IQ MWDQE
Sbjct: 4   LRVLRRCSQRRLSSAAQQIDTIIRVDHAGELGADRIYAGQMAVLGKSSVGPMIQHMWDQE 63

Query: 70  KAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYN 129
           K HKAKFEELI KYRVRPT L P WNVAGF+LGAGSALLGPK AMACTVAVESVIV+HYN
Sbjct: 64  KEHKAKFEELINKYRVRPTVLTPIWNVAGFMLGAGSALLGPKAAMACTVAVESVIVEHYN 123

Query: 130 EQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVGCKVAI 189
            QLR LMSDP  NREL+ V+ KFRD+EQEHHD GL+ GAE+ PFY+  +++IK+GC+ AI
Sbjct: 124 NQLRVLMSDPEKNRELLTVLQKFRDDEQEHHDKGLDEGAEETPFYEAFSNIIKLGCRAAI 183

Source: Gryllus pennsylvanicus

Species: Gryllus pennsylvanicus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189014524|gb|ACD69498.1| ubiquinone biosynthesis protein [Gryllus pennsylvanicus] gi|189014526|gb|ACD69499.1| ubiquinone biosynthesis protein [Gryllus pennsylvanicus] gi|189014528|gb|ACD69500.1| ubiquinone biosynthesis protein [Gryllus pennsylvanicus] gi|189014530|gb|ACD69501.1| ubiquinone biosynthesis protein [Gryllus pennsylvanicus] gi|189014532|gb|ACD69502.1| ubiquinone biosynthesis protein [Gryllus pennsylvanicus] gi|189014538|gb|ACD69505.1| ubiquinone biosynthesis protein [Gryllus pennsylvanicus] gi|189014540|gb|ACD69506.1| ubiquinone biosynthesis protein [Gryllus pennsylvanicus] gi|189014542|gb|ACD69507.1| ubiquinone biosynthesis protein [Gryllus pennsylvanicus] gi|189014544|gb|ACD69508.1| ubiquinone biosynthesis protein [Gryllus pennsylvanicus] gi|189014546|gb|ACD69509.1| ubiquinone biosynthesis protein [Gryllus firmus] gi|189014548|gb|ACD69510.1| ubiquinone biosynthesis protein [Gryllus firmus] gi|189014550|gb|ACD69511.1| ubiquinone biosynthesis protein [Gryllus firmus] gi|189014552|gb|ACD69512.1| ubiquinone biosynthesis protein [Gryllus firmus] gi|189014556|gb|ACD69514.1| ubiquinone biosynthesis protein [Gryllus firmus] Back     alignment and taxonomy information
>gi|189014554|gb|ACD69513.1| ubiquinone biosynthesis protein [Gryllus firmus] Back     alignment and taxonomy information
>gi|189014536|gb|ACD69504.1| ubiquinone biosynthesis protein [Gryllus pennsylvanicus] Back     alignment and taxonomy information
>gi|350399177|ref|XP_003485443.1| PREDICTED: ubiquinone biosynthesis protein COQ7 homolog [Bombus impatiens] Back     alignment and taxonomy information
>gi|340714447|ref|XP_003395740.1| PREDICTED: ubiquinone biosynthesis protein COQ7 homolog [Bombus terrestris] Back     alignment and taxonomy information
>gi|322796526|gb|EFZ19000.1| hypothetical protein SINV_01453 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|383863729|ref|XP_003707332.1| PREDICTED: ubiquinone biosynthesis protein COQ7 homolog [Megachile rotundata] Back     alignment and taxonomy information
>gi|119115340|ref|XP_311027.3| AGAP000118-PA [Anopheles gambiae str. PEST] gi|116130788|gb|EAA06356.4| AGAP000118-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|242247577|ref|NP_001156131.1| ubiquinone biosynthesis protein COQ7 homolog [Acyrthosiphon pisum] gi|239788411|dbj|BAH70889.1| ACYPI003157 [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query218
FB|FBgn0029502219 COQ7 "COQ7" [Drosophila melano 0.738 0.735 0.695 2.4e-60
UNIPROTKB|Q2TBW2217 COQ7 "Ubiquinone biosynthesis 0.761 0.764 0.654 6.1e-55
UNIPROTKB|Q58CW1179 COQ7 "COQ7 protein" [Bos tauru 0.761 0.927 0.654 6.1e-55
UNIPROTKB|F1NIP2202 COQ7 "Uncharacterized protein" 0.743 0.801 0.668 1.6e-54
MGI|MGI:107207217 Coq7 "demethyl-Q 7" [Mus muscu 0.743 0.746 0.662 3.4e-54
UNIPROTKB|E2RF61217 COQ7 "Uncharacterized protein" 0.743 0.746 0.656 4.3e-54
UNIPROTKB|H3BP28194 COQ7 "Ubiquinone biosynthesis 0.761 0.855 0.642 8.9e-54
UNIPROTKB|Q99807217 COQ7 "Ubiquinone biosynthesis 0.761 0.764 0.642 8.9e-54
RGD|2381179 Coq7 "coenzyme Q7 homolog, ubi 0.743 0.905 0.656 3.8e-53
UNIPROTKB|Q63619179 Coq7 "Ubiquinone biosynthesis 0.743 0.905 0.656 3.8e-53
FB|FBgn0029502 COQ7 "COQ7" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 112/161 (69%), Positives = 136/161 (84%)

Query:    29 DEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPT 88
             DEIIRVDHAGELGADRIYAGQMA+LGN  +   I  MW+QEK H+ +FE+LI+++RVRPT
Sbjct:    53 DEIIRVDHAGELGADRIYAGQMAILGNGPLGKTIGHMWEQEKEHRKQFEQLIQQHRVRPT 112

Query:    89 ALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDV 148
              + P WNVAGF+LGAG+AL+G K AMACTVAVE+VIV+HYN+QLR +M  P  ++EL+  
Sbjct:   113 IMTPIWNVAGFVLGAGTALMGEKAAMACTVAVETVIVEHYNDQLRQIMEAPNPDKELLAT 172

Query:   149 IHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVGCKVAI 189
             I KFRDEEQEHHDTG++HGAEQAPFY+ MT+VIK GCK AI
Sbjct:   173 ITKFRDEEQEHHDTGIDHGAEQAPFYQAMTEVIKFGCKTAI 213
GO:0005739 "mitochondrion" evidence=ISS
GO:0006744 "ubiquinone biosynthetic process" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0046914 "transition metal ion binding" evidence=IEA
UNIPROTKB|Q2TBW2 COQ7 "Ubiquinone biosynthesis protein COQ7 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q58CW1 COQ7 "COQ7 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIP2 COQ7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:107207 Coq7 "demethyl-Q 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RF61 COQ7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|H3BP28 COQ7 "Ubiquinone biosynthesis protein COQ7 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q99807 COQ7 "Ubiquinone biosynthesis protein COQ7 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|2381 Coq7 "coenzyme Q7 homolog, ubiquinone (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q63619 Coq7 "Ubiquinone biosynthesis protein COQ7 homolog" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P97478COQ7_MOUSENo assigned EC number0.66250.74310.7465yesN/A
Q63619COQ7_RATNo assigned EC number0.65640.74310.9050yesN/A
P48376COQ7_CAEELNo assigned EC number0.51660.81190.9465yesN/A
O74826COQ7_SCHPONo assigned EC number0.53210.75680.7638yesN/A
Q54VB3COQ7_DICDINo assigned EC number0.56250.80270.8064yesN/A
P41735CAT5_YEASTNo assigned EC number0.46020.74310.6952yesN/A
Q99807COQ7_HUMANNo assigned EC number0.65030.74310.7465yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
pfam03232170 pfam03232, COQ7, Ubiquinone biosynthesis protein C 1e-100
cd01042165 cd01042, DMQH, Demethoxyubiquinone hydroxylase, fe 6e-82
COG2941204 COG2941, CAT5, Ubiquinone biosynthesis protein COQ 5e-57
cd00657130 cd00657, Ferritin_like, Ferritin-like superfamily 1e-10
cd01045139 cd01045, Ferritin_like_AB, Uncharacterized family 0.002
>gnl|CDD|217441 pfam03232, COQ7, Ubiquinone biosynthesis protein COQ7 Back     alignment and domain information 
 Score =  287 bits (738), Expect = e-100
 Identities = 107/165 (64%), Positives = 124/165 (75%), Gaps = 2/165 (1%)

Query: 26  RQLDEIIRVDHAGELGADRIYAGQMAVLG-NSSVAPKIQEMWDQEKAHKAKFEELIRKYR 84
             +D IIRVDHAGELGA RIYAGQ+AVLG   S+ P I+EMWDQEK H A F ELI + R
Sbjct: 1   ALIDRIIRVDHAGELGAVRIYAGQLAVLGPRPSLGPVIKEMWDQEKVHLATFNELILERR 60

Query: 85  VRPTALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRE 144
           VRPT LLP W+VAGF LGAG+ALLG K AMACT AVE+VI +HYN+QLR L      ++E
Sbjct: 61  VRPTLLLPLWHVAGFALGAGTALLGKKAAMACTAAVETVIDEHYNDQLRELEELD-DDKE 119

Query: 145 LMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVGCKVAI 189
           L + I KFRDEE EH DT +EHGAEQAP Y L++  IK GC+ AI
Sbjct: 120 LKETIAKFRDEELEHRDTAIEHGAEQAPAYPLLSGAIKAGCRAAI 164

Members of this family contain two repeats of about 90 amino acids, that contains two conserved motifs. One of these DXEXXH may be part of an enzyme active site. Length = 170
>gnl|CDD|153101 cd01042, DMQH, Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain Back     alignment and domain information
>gnl|CDD|225492 COG2941, CAT5, Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|153097 cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>gnl|CDD|153104 cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 218
KOG4061|consensus217 100.0
PF03232172 COQ7: Ubiquinone biosynthesis protein COQ7; InterP 100.0
COG2941204 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzym 100.0
cd01042165 DMQH Demethoxyubiquinone hydroxylase, ferritin-lik 100.0
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 99.05
KOG4061|consensus217 99.03
PF03232172 COQ7: Ubiquinone biosynthesis protein COQ7; InterP 98.85
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 98.71
cd01042165 DMQH Demethoxyubiquinone hydroxylase, ferritin-lik 98.66
cd07908154 Mn_catalase_like Manganese catalase-like protein, 98.53
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 98.53
cd01052148 DPSL DPS-like protein, ferritin-like diiron-bindin 98.44
COG1633176 Uncharacterized conserved protein [Function unknow 98.4
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 98.11
PRK10635158 bacterioferritin; Provisional 98.03
cd01051156 Mn_catalase Manganese catalase, ferritin-like diir 98.01
cd00907153 Bacterioferritin Bacterioferritin, ferritin-like d 97.89
PRK13456186 DNA protection protein DPS; Provisional 97.67
TIGR00754157 bfr bacterioferritin. Bacterioferritin is a homomu 97.65
PF00210142 Ferritin: Ferritin-like domain; InterPro: IPR00833 97.45
PRK13456186 DNA protection protein DPS; Provisional 97.11
PF13668137 Ferritin_2: Ferritin-like domain 97.11
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 97.0
cd01055156 Nonheme_Ferritin nonheme-containing ferritins. Non 96.99
cd01053168 AOX Alternative oxidase, ferritin-like diiron-bind 96.8
TIGR02284139 conserved hypothetical protein. Members of this pr 96.77
PLN02478328 alternative oxidase 96.65
PF01786207 AOX: Alternative oxidase; InterPro: IPR002680 The 96.45
PRK10635158 bacterioferritin; Provisional 96.25
cd01048135 Ferritin_like_AB2 Uncharacterized family of ferrit 96.23
cd07908154 Mn_catalase_like Manganese catalase-like protein, 96.07
cd01051156 Mn_catalase Manganese catalase, ferritin-like diir 96.01
PF05974159 DUF892: Domain of unknown function (DUF892); Inter 95.91
PRK127751006 putative trifunctional 2-polyprenylphenol hydroxyl 95.82
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 95.44
PF10118253 Metal_hydrol: Predicted metal-dependent hydrolase; 95.35
cd01052148 DPSL DPS-like protein, ferritin-like diiron-bindin 95.07
cd01056161 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferr 94.62
PRK10304165 ferritin; Provisional 94.49
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 94.19
cd01043139 DPS DPS protein, ferritin-like diiron-binding doma 93.43
COG2406172 Protein distantly related to bacterial ferritins [ 93.26
PF09537111 DUF2383: Domain of unknown function (DUF2383); Int 92.89
PF13668137 Ferritin_2: Ferritin-like domain 91.93
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 91.79
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 91.31
cd00904160 Ferritin Ferritin iron storage proteins. Ferritins 90.75
PF11583304 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_ 90.33
TIGR00754157 bfr bacterioferritin. Bacterioferritin is a homomu 88.88
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 88.36
COG3461103 Uncharacterized conserved protein [Function unknow 87.46
cd00907153 Bacterioferritin Bacterioferritin, ferritin-like d 86.93
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 86.05
PF04305253 DUF455: Protein of unknown function (DUF455); Inte 86.04
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 85.24
COG2406172 Protein distantly related to bacterial ferritins [ 81.38
>KOG4061|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.2e-68  Score=445.89  Aligned_cols=180  Identities=61%  Similarity=0.919  Sum_probs=162.2

Q ss_pred             cccccccCChHhHHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchh
Q psy9570          13 FRLVRNLHQKRVSRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLP   92 (218)
Q Consensus        13 ~~~~~~~l~~~~~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~P   92 (218)
                      +.+....|++.++..+++++|||||||+||++||.||++|+.+.+++|.|++|||||++|+..|++++.++|||||+|.|
T Consensus        34 ~~s~g~~l~~~~~a~~d~iIRVDhAGElGAdrIYaGQ~avL~~~~vgpvi~hmWdqEk~Hl~tf~~l~~k~rVrpT~l~P  113 (217)
T KOG4061|consen   34 VISRGTHLSASRQALLDRIIRVDHAGELGADRIYAGQMAVLQGTSVGPVIKHMWDQEKEHLKTFENLALKHRVRPTVLTP  113 (217)
T ss_pred             eecCCcccCchhHHHHHHhheeccccccccchhhhchhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHccCCchhhhh
Confidence            34445569999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhCCCc-ccHHHHHHHHHHHHHHHhHHHhhHhcCCCcC
Q psy9570          93 FWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPA-ANRELMDVIHKFRDEEQEHHDTGLEHGAEQA  171 (218)
Q Consensus        93 lW~~~gf~LGa~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~-~~~~l~~~i~~~rddE~eH~d~A~~~ga~~a  171 (218)
                      +|+++||+||++|||+|++++||||+|||++|..|||+||++|.+.|| +.++|+.+|.+|||||+||+|+|++|+++++
T Consensus       114 ~w~vagfalGaGTALlg~eaAMACT~AVEtvIg~HYNdQlr~l~~~~pe~~kell~~i~~fRDeEleHhdtgv~hda~~A  193 (217)
T KOG4061|consen  114 LWNVAGFALGAGTALLGKEAAMACTEAVETVIGGHYNDQLRELAEDDPEEHKELLSTITKFRDEELEHHDTGVEHDAEKA  193 (217)
T ss_pred             HHHHHHHHhccchhhhChHHHHHHHHHHHHHHHHhhhHHHHHHHHhCcHhHHHHHHHHHHHhHHHHHhhccccccCcccC
Confidence            999999999999999999999999999999999999999999999887 7899999999999999999999988877765


Q ss_pred             chHHHHHHHHHHHHHHHHHhc
Q psy9570         172 PFYKLMTDVIKVGCKVAIEHG  192 (218)
Q Consensus       172 p~~~~l~~~ik~~t~~AI~~~  192 (218)
                      |+|.+|+++||.||++|||.+
T Consensus       194 pay~~lt~~Iq~gCk~AI~~~  214 (217)
T KOG4061|consen  194 PAYAALTEIIQTGCKVAIWIA  214 (217)
T ss_pred             cHHHHHHHHHHHHhHHHHHHh
Confidence            555555555544444444444

>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ] Back     alignment and domain information
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism] Back     alignment and domain information
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>KOG4061|consensus Back     alignment and domain information
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ] Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>PRK10635 bacterioferritin; Provisional Back     alignment and domain information
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK13456 DNA protection protein DPS; Provisional Back     alignment and domain information
>TIGR00754 bfr bacterioferritin Back     alignment and domain information
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms [] Back     alignment and domain information
>PRK13456 DNA protection protein DPS; Provisional Back     alignment and domain information
>PF13668 Ferritin_2: Ferritin-like domain Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01055 Nonheme_Ferritin nonheme-containing ferritins Back     alignment and domain information
>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain Back     alignment and domain information
>TIGR02284 conserved hypothetical protein Back     alignment and domain information
>PLN02478 alternative oxidase Back     alignment and domain information
>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water [] Back     alignment and domain information
>PRK10635 bacterioferritin; Provisional Back     alignment and domain information
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain Back     alignment and domain information
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function Back     alignment and domain information
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>PF10118 Metal_hydrol: Predicted metal-dependent hydrolase; InterPro: IPR016516 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01056 Euk_Ferritin eukaryotic ferritins Back     alignment and domain information
>PRK10304 ferritin; Provisional Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain Back     alignment and domain information
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only] Back     alignment and domain information
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain Back     alignment and domain information
>PF13668 Ferritin_2: Ferritin-like domain Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>cd00904 Ferritin Ferritin iron storage proteins Back     alignment and domain information
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A Back     alignment and domain information
>TIGR00754 bfr bacterioferritin Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>COG3461 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
2fzf_A175 Hypothetical protein; structural genomics, southea 5e-06
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Length = 175 Back     alignment and structure
 Score = 44.3 bits (104), Expect = 5e-06
 Identities = 22/138 (15%), Positives = 52/138 (37%), Gaps = 8/138 (5%)

Query: 28  LDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRP 87
           L+E++ +    E+GA   Y      +   ++  KI  + ++EK H+A   +L  +     
Sbjct: 21  LEELLGMAIKAEIGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGK 80

Query: 88  TALLPFWNVAGFILGAGSALLGPKGAMAC---TVAVESVIVDHYNEQLRALMSDPAANRE 144
             + P  ++   +      L   +  +      +  E +  + Y +     + +     E
Sbjct: 81  EVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLK-----LEEMVKEEE 135

Query: 145 LMDVIHKFRDEEQEHHDT 162
              ++    D E+ H+ T
Sbjct: 136 KKRLMRYLADMERGHYYT 153

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query218
2qqy_A149 Sigma B operon; dodecameric alpha-helical, ferriti 98.65
2y3q_A158 Bacterioferritin; metal binding protein, redox; HE 98.33
1nfv_A179 Bacterioferritin; 24 subunits in the active molecu 98.12
2fzf_A175 Hypothetical protein; structural genomics, southea 98.07
3gvy_A161 Bacterioferritin; iron storage, DI-iron, ferroxida 98.06
3uoi_A161 Bacterioferritin, BFR; structural genomics, TB str 98.04
2fkz_A155 Bacterioferritin; ferroxidase, DIIRON site, iron T 97.99
2vxx_A192 Starvation induced DNA binding protein; stress res 97.98
1jgc_A161 Bacterioferritin, BFR; iron storage protein, metal 97.98
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 97.93
4am5_A159 Bacterioferritin; metal binding protein, ferroxida 97.93
3qb9_A174 Bacterioferritin, BFR; cytosol, structural genomic 97.91
3r2k_A154 Bacterioferritin, BFR; bacterial ferritin, iron bi 97.86
4etr_A153 Putative uncharacterized protein; DUF2383, domain 97.84
2vzb_A170 Putative bacterioferritin-related protein; DPS, DP 97.83
1zpy_A95 Hypothetical protein NE0167; structural genomics, 97.82
3fvb_A182 Bacterioferritin; niaid, ssgcid, decode, structura 97.8
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 97.6
2c41_A158 DPS family DNA-binding stress response protein; ir 97.42
3k6c_A95 Uncharacterized protein NE0167; structural genomic 97.33
2v8t_A302 Manganese-containing pseudocatalase; manganese cat 97.21
1tjo_A182 Iron-rich DPSA-homolog protein; ferritin, low-iron 97.14
1o9r_A162 Agrobacterium tumefaciens DPS; iron-binding protei 97.14
1o9i_A266 Pseudocatalase; oxidoreductase, hexamer, dimangane 97.1
1j30_A144 144AA long hypothetical rubrerythrin; sulerythrin, 97.0
2c2u_A207 DPS, DNA-binding stress response protein; DNA-bind 96.99
2jd6_0174 Ferritin homolog, ferritin; metal transport, iron, 96.98
3oj5_A189 Ferritin family protein; ferroxidase, cytosol, oxi 96.95
1eum_A165 Ferritin 1; ECFTNA, metal binding protein; 2.05A { 96.88
2yjk_A161 AFP, DPS; metal-binding protein, iron uptake, ferr 96.77
1krq_A167 Ferritin; H-chain like four-helix bundle, binding 96.76
2fjc_A156 Antigen TPF1; mini ferritin, iron binding protein, 96.67
1n1q_A149 DPS protein; four-helix bundle, unknown function; 96.64
2yw6_A183 DNA protection during starvation protein; DNA-bind 96.62
1jm0_A50 Protein (four-helix bundle model); alpha-helical b 96.58
3ak8_A167 DNA protection during starvation protein; DPS-like 96.58
2c2j_A211 DNA-binding stress response protein; DNA-binding p 96.56
1jig_A146 DLP-2; dodecamer, four-helix bundle, metal transpo 96.46
2xgw_A199 Peroxide resistance protein; metal binding protein 96.45
1rcd_A173 L ferritin; iron storage; 2.00A {Rana catesbeiana} 96.35
2hz8_A115 De novo designed DIIRON protein; four-helix bundle 96.35
3iq1_A159 DPS family protein; csgid, SAD, niaid, metal trans 96.33
2z90_A161 Starvation-inducible DNA-binding protein or FINE t 96.32
2wlu_A175 DPS-like peroxide resistance protein; DNA-binding, 96.32
3uno_A189 Probable bacterioferritin BFRB; ferroxidase activi 96.31
1ji5_A142 DLP-1; dodecamer, four-helix bundle, metal transpo 96.24
1vlg_A176 Ferritin; TM1128, structural genomics, JCSG, prote 96.22
2clb_A188 DPS-like protein; DI-iron carboxylate, hypothetica 96.21
3bvf_A181 Ferritin; iron storage, metal-binding, oxidoreduct 96.19
1s3q_A173 Ferritin; ferroxidase, four helix bundle, iron sto 96.12
2fzf_A175 Hypothetical protein; structural genomics, southea 96.08
2chp_A153 MRGA, metalloregulation DNA-binding stress protein 96.06
3qz3_A184 Ferritin; structural genomics, the center for stru 95.94
2v2p_A174 Ferritin light chain; metal transport, iron, haemi 95.9
2cih_A183 Ferritin heavy chain; apoferritin, ferroxidase, DI 95.8
2d5k_A156 DPS, DPS family protein; four helix bundle, metal 95.77
2bk6_A156 Non-heme iron-containing ferritin; DPS (DNA bindin 95.77
2cf7_A165 DPR; peroxide resistance, DPS-family, ferritin-lik 95.43
1yuz_A202 Nigerythrin; rubrythrin, rubredoxin, hemerythrin, 95.12
3ka8_A176 Ferritin, middle subunit; iron storage, DIIRON, ir 95.02
4di0_A144 Rubrerythrin; ssgcid, seattle structural genomics 94.73
3a68_A212 Sferh-4, ferritin-4, chloroplastic; 4-helix bundle 94.64
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 94.52
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 94.34
4eve_A164 Neutrophil-activating protein; dodecamer, four-hel 94.26
3kwo_A152 Putative bacterioferritin; alpha-helix, bacterial 94.18
3e6s_A168 Ferritin; iron storage, ferroxidase, oxidoreductas 94.03
3pwf_A170 Rubrerythrin; non heme iron peroxidases, oxidative 93.85
2v8t_A302 Manganese-containing pseudocatalase; manganese cat 93.68
2e0z_A 345 Virus-like particle; bacteriophage, HK97; 3.60A {P 93.32
1lko_A191 Rubrerythrin all-iron(II) form; reduced form, DIIR 92.88
3vnx_A204 Ferritin; 4-helix bundle, iron storage, oxidoreduc 92.76
3kxu_A191 Ferritin; iron storage protein, disorder, iron, me 92.7
2pyb_A151 NAPA, neutrophil activating protein; ferritin, DPS 92.46
1o9i_A266 Pseudocatalase; oxidoreductase, hexamer, dimangane 92.26
2qqy_A149 Sigma B operon; dodecameric alpha-helical, ferriti 91.9
2gs4_A166 Protein YCIF; stress proteins, rubrerythrin, metal 91.85
4am5_A159 Bacterioferritin; metal binding protein, ferroxida 91.7
2y3q_A158 Bacterioferritin; metal binding protein, redox; HE 91.61
2gyq_A173 YCFI, putative structural protein; structural geno 91.45
1z6o_M191 Ferritin heavy chain; metal binding protein, iron 91.26
1nfv_A179 Bacterioferritin; 24 subunits in the active molecu 91.2
1jgc_A161 Bacterioferritin, BFR; iron storage protein, metal 91.15
2fkz_A155 Bacterioferritin; ferroxidase, DIIRON site, iron T 90.61
3r2k_A154 Bacterioferritin, BFR; bacterial ferritin, iron bi 90.39
1z6o_A212 Ferritin light chain; metal binding protein, iron 90.26
3uoi_A161 Bacterioferritin, BFR; structural genomics, TB str 90.13
1j30_A144 144AA long hypothetical rubrerythrin; sulerythrin, 89.81
3gvy_A161 Bacterioferritin; iron storage, DI-iron, ferroxida 89.53
3qb9_A174 Bacterioferritin, BFR; cytosol, structural genomic 88.68
3qhb_A179 Symerythrin, ORF180; four-helix bundle, carboxylat 88.28
3fse_A365 Two-domain protein containing DJ-1/THIJ/PFPI-like 88.27
3fvb_A182 Bacterioferritin; niaid, ssgcid, decode, structura 87.57
2vzb_A170 Putative bacterioferritin-related protein; DPS, DP 86.76
1ji5_A142 DLP-1; dodecamer, four-helix bundle, metal transpo 81.46
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str} Back     alignment and structure
Probab=98.65  E-value=7.6e-07  Score=68.94  Aligned_cols=128  Identities=18%  Similarity=0.217  Sum_probs=102.8

Q ss_pred             hHHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHH
Q psy9570          24 VSRQLDEIIRVDHAGELGADRIYAGQMAVLGNSS---VAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFI  100 (218)
Q Consensus        24 ~~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~---~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~  100 (218)
                      .++.+...|..-.++|+.|...|..+...++++.   +...+.+..++|.+|...|.+++..+|.+|+. .|- .     
T Consensus         7 ~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~-~~~-~-----   79 (149)
T 2qqy_A            7 DVKELIEGLNEDLAGEYSAIIMYNHNAATVSGIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTT-IPL-R-----   79 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC-CCC-C-----
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC-CCC-C-----
Confidence            4556788899999999999999999999998765   67788999999999999999999999999988 431 0     


Q ss_pred             HHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhC-CCcccHHHHHHHHHHHHHHHhHHHhhH
Q psy9570         101 LGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMS-DPAANRELMDVIHKFRDEEQEHHDTGL  164 (218)
Q Consensus       101 LGa~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~-~d~~~~~l~~~i~~~rddE~eH~d~A~  164 (218)
                         ..........+......|+.+...|++.+..-.+ .|   ....+.++.+.+||.+|...-.
T Consensus        80 ---~~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D---~~t~~~l~~~~~eee~h~~~l~  138 (149)
T 2qqy_A           80 ---VKQAEDVREMLEYARQSEYETIKRYEKRKEQAANLNM---TELVVKLEDMIADETNHMEELD  138 (149)
T ss_dssp             ---CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence               1122244567888888899999999998876543 44   4556669999999999987643
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A* Back     alignment and structure
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1 Back     alignment and structure
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A* Back     alignment and structure
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* Back     alignment and structure
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus} Back     alignment and structure
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A* Back     alignment and structure
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A* Back     alignment and structure
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A Back     alignment and structure
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa} Back     alignment and structure
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis} Back     alignment and structure
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A Back     alignment and structure
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus} Back     alignment and structure
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea} Back     alignment and structure
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A Back     alignment and structure
>1tjo_A Iron-rich DPSA-homolog protein; ferritin, low-iron, metal binding protein; 1.60A {Halobacterium salinarum} SCOP: a.25.1.1 PDB: 1moj_A 1tk6_A 1tko_A 1tkp_A Back     alignment and structure
>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein; 1.45A {Agrobacterium tumefaciens} SCOP: a.25.1.1 PDB: 3ge4_A* Back     alignment and structure
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A Back     alignment and structure
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1 Back     alignment and structure
>2c2u_A DPS, DNA-binding stress response protein; DNA-binding protein, iron; 1.1A {Deinococcus radiodurans} PDB: 2c2f_A 2f7n_A Back     alignment and structure
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0 Back     alignment and structure
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A Back     alignment and structure
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1 Back     alignment and structure
>2yjk_A AFP, DPS; metal-binding protein, iron uptake, ferritin fold; 2.00A {Microbacterium arborescens} PDB: 2yjj_A Back     alignment and structure
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1 Back     alignment and structure
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1 Back     alignment and structure
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1 Back     alignment and structure
>2yw6_A DNA protection during starvation protein; DNA-binding protein, quarternary assembly, ferroxidation, oxidoreductase; HET: DNA; 2.53A {Mycobacterium smegmatis} SCOP: a.25.1.1 PDB: 1vei_A 1vel_A 1veq_A 1uvh_A* 2yw7_A Back     alignment and structure
>1jm0_A Protein (four-helix bundle model); alpha-helical bundle, protein design, de novo protein; 1.70A {Synthetic} SCOP: k.8.1.1 PDB: 1jmb_A 1ovu_A 1ovv_A 1lt1_A 1ec5_A 1nvo_A 1ovr_A 2kik_A 1u7j_A 1y47_A 1mft_A 1u7m_A Back     alignment and structure
>3ak8_A DNA protection during starvation protein; DPS-like protein, dodecamer, iron-binding protein, metal BIN protein, oxidoreductase; HET: DNA; 1.25A {Salmonella enterica subsp} PDB: 3ak9_A* 1f33_A* 1f30_A* 1dps_A 1jts_A* 1jre_A* 1l8h_A* 1l8i_A* 4dyu_A* Back     alignment and structure
>2c2j_A DNA-binding stress response protein; DNA-binding protein, DPS; 2.05A {Deinococcus radiodurans} PDB: 2c6r_A Back     alignment and structure
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1 Back     alignment and structure
>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A {Streptococcus pyogenes} Back     alignment and structure
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A Back     alignment and structure
>2hz8_A De novo designed DIIRON protein; four-helix bundle, de novo protein; NMR {Escherichia coli} PDB: 2lfd_A 2lff_A Back     alignment and structure
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>2z90_A Starvation-inducible DNA-binding protein or FINE tangled PILI major subunit; quarternary assembly, ferroxidation; 2.40A {Mycobacterium smegmatis str} Back     alignment and structure
>2wlu_A DPS-like peroxide resistance protein; DNA-binding, oxidoreductase; 1.94A {Streptococcus pyogenes} PDB: 2wla_A Back     alignment and structure
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A Back     alignment and structure
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1 Back     alignment and structure
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A* Back     alignment and structure
>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein, bacterioferritin, hydrogen peroxide, metal binding protein, archaea; 2.4A {Sulfolobus solfataricus} Back     alignment and structure
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis} Back     alignment and structure
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1 Back     alignment and structure
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ... Back     alignment and structure
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A Back     alignment and structure
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp} Back     alignment and structure
>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from starved cells), ferroxidase center, mutagenesis study; 2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A 2bjy_A 2iy4_A 2bkc_A Back     alignment and structure
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase, iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB: 2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A* 2xkq_A* Back     alignment and structure
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Back     alignment and structure
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A Back     alignment and structure
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage, CAGE-like protein, plant, iron, metal-binding, oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A Back     alignment and structure
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0 Back     alignment and structure
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A Back     alignment and structure
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A Back     alignment and structure
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A Back     alignment and structure
>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus} Back     alignment and structure
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A Back     alignment and structure
>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva pertusa} Back     alignment and structure
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A Back     alignment and structure
>2pyb_A NAPA, neutrophil activating protein; ferritin, DPS, four-helix bundle, metal transport; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A Back     alignment and structure
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str} Back     alignment and structure
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4 Back     alignment and structure
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A* Back     alignment and structure
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A* Back     alignment and structure
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4 Back     alignment and structure
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Back     alignment and structure
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Back     alignment and structure
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Back     alignment and structure
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* Back     alignment and structure
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A Back     alignment and structure
>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Back     alignment and structure
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A* Back     alignment and structure
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1 Back     alignment and structure
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1 Back     alignment and structure
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A* Back     alignment and structure
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A Back     alignment and structure
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} Back     alignment and structure
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis} Back     alignment and structure
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 218
d2fzfa1158 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {A 9e-21
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 158 Back     information, alignment and structure

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein PF1190
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 82.7 bits (203), Expect = 9e-21
 Identities = 21/139 (15%), Positives = 51/139 (36%), Gaps = 8/139 (5%)

Query: 27  QLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVR 86
            L+E++ +    E+GA   Y      +   ++  KI  + ++EK H+A   +L  +    
Sbjct: 11  SLEELLGMAIKAEIGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPG 70

Query: 87  PTALLPFWNVAGFI---LGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANR 143
              + P  ++   +         +      +   +  E +  + Y +     + +     
Sbjct: 71  KEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLK-----LEEMVKEE 125

Query: 144 ELMDVIHKFRDEEQEHHDT 162
           E   ++    D E+ H+ T
Sbjct: 126 EKKRLMRYLADMERGHYYT 144

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query218
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 99.09
d1yuza1135 Nigerythrin, N-terminal domain {Desulfovibrio vulg 98.25
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 98.19
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 98.13
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 98.11
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 98.09
d1nf4a_169 Bacterioferritin (cytochrome b1) {Desulfovibrio de 97.93
d2htna1158 Bacterioferritin (cytochrome b1) {Escherichia coli 97.83
d2fkza1154 Bacterioferritin (cytochrome b1) {Azotobacter vine 97.82
d2ib0a1142 Hypothetical protein Rv2844 {Mycobacterium tubercu 97.66
d1jgca_160 Bacterioferritin (cytochrome b1) {Rhodobacter caps 97.49
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 97.2
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 97.19
d1zpya191 Hypothetical protein NE0167 {Nitrosomonas europaea 96.86
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 96.09
d1jkva_266 Manganese catalase (T-catalase) {Lactobacillus pla 96.02
d1euma_161 Non-hem ferritin {Escherichia coli, FtnA [TaxId: 5 95.95
d1vlga_164 Non-hem ferritin {Thermotoga maritima [TaxId: 2336 95.72
d1krqa_165 Non-hem ferritin {Campylobacter jejuni [TaxId: 197 95.66
d1s3qa1162 Non-hem ferritin {Archaeon Archaeoglobus fulgidus 95.57
d1nf4a_169 Bacterioferritin (cytochrome b1) {Desulfovibrio de 95.53
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 95.38
d1o9ra_162 Dodecameric ferritin homolog {Agrobacterium tumefa 94.7
d1jgca_160 Bacterioferritin (cytochrome b1) {Rhodobacter caps 94.05
d1tjoa_180 Dodecameric ferritin homolog {Archaeon Halobacteri 93.62
d2fkza1154 Bacterioferritin (cytochrome b1) {Azotobacter vine 93.3
d2cwla1299 Manganese catalase (T-catalase) {Thermus thermophi 92.92
d1rcda_171 (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 92.8
d1jkva_266 Manganese catalase (T-catalase) {Lactobacillus pla 92.57
d1lb3a_179 (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090] 91.84
d2ib0a1142 Hypothetical protein Rv2844 {Mycobacterium tubercu 90.64
d1r03a_171 (Apo)ferritin {Human (Homo sapiens), mitocondial i 90.07
d2cwla1299 Manganese catalase (T-catalase) {Thermus thermophi 89.38
d1mtyd_ 512 Methane monooxygenase hydrolase alpha subunit {Met 87.43
d2htna1158 Bacterioferritin (cytochrome b1) {Escherichia coli 86.85
d1bg7a_173 (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 84.59
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 83.98
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 83.15
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 81.52
d1dpsa_159 Dodecameric ferritin homolog {Escherichia coli, Dp 80.93
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein PF1190
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.09  E-value=9.5e-11  Score=89.88  Aligned_cols=134  Identities=16%  Similarity=0.197  Sum_probs=110.5

Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q psy9570          25 SRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAG  104 (218)
Q Consensus        25 ~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~  104 (218)
                      +-.+..+|+..+.||..|..+|.-.+...+++.++..+..+..+|..|...|.+++.+++..|+...|.+...+......
T Consensus         9 ~~~l~e~l~~ai~~E~~a~~~Y~~~a~~~~~~~~~~~f~~la~eE~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (158)
T d2fzfa1           9 DFSLEELLGMAIKAEIGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQPVA   88 (158)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCCCCCCSCCBSCCCCCCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccchhhhhhhhhhhhH
Confidence            33467799999999999999999999999999999999999999999999999999999999998888776654433322


Q ss_pred             ---hhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHhh
Q psy9570         105 ---SALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG  163 (218)
Q Consensus       105 ---tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~A  163 (218)
                         ....+...++.+....|....+.|+...+..  .|   +.+++.+.++.+||.+|...-
T Consensus        89 ~~~~~~~~~~~~l~~a~~~E~~a~~~Y~~la~~~--~d---~~~~~l~~~i~~~E~~H~~~l  145 (158)
T d2fzfa1          89 RELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMV--KE---EEKKRLMRYLADMERGHYYTL  145 (158)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--CS---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--Cc---HHHHHHHHHHHHHHHHHHHHH
Confidence               2223345667777888999999999988765  33   667777999999999999764
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]} Back     information, alignment and structure
>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1o9ra_ a.25.1.1 (A:) Dodecameric ferritin homolog {Agrobacterium tumefaciens, Dps [TaxId: 358]} Back     information, alignment and structure
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1tjoa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Archaeon Halobacterium salinarum [TaxId: 2242]} Back     information, alignment and structure
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Back     information, alignment and structure
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens), mitocondial isoform [TaxId: 9606]} Back     information, alignment and structure
>d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1dpsa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Escherichia coli, Dps [TaxId: 562]} Back     information, alignment and structure